Query 021203
Match_columns 316
No_of_seqs 147 out of 211
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 08:24:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021203.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021203hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05153 DUF706: Family of unk 100.0 3E-143 6E-148 988.7 12.3 251 64-316 3-253 (253)
2 KOG1573 Aldehyde reductase [Ge 100.0 1.6E-97 3E-102 657.8 12.7 199 32-233 2-204 (204)
3 TIGR03276 Phn-HD phosphonate d 97.2 0.00041 8.9E-09 62.8 4.5 144 103-301 5-174 (179)
4 TIGR00277 HDIG uncharacterized 95.4 0.022 4.7E-07 41.3 3.7 29 221-251 49-77 (80)
5 smart00471 HDc Metal dependent 95.3 0.012 2.7E-07 43.9 2.2 39 122-160 3-46 (124)
6 TIGR00488 putative HD superfam 94.1 0.031 6.7E-07 47.9 2.2 37 122-158 7-47 (158)
7 PRK00106 hypothetical protein; 92.6 0.3 6.4E-06 50.9 6.7 88 103-253 332-423 (535)
8 PF01966 HD: HD domain; Inter 92.4 0.046 9.9E-07 41.7 0.5 34 125-158 2-41 (122)
9 TIGR03319 YmdA_YtgF conserved 91.3 0.51 1.1E-05 48.7 6.7 88 103-253 311-402 (514)
10 COG4341 Predicted HD phosphohy 90.8 0.4 8.7E-06 44.0 4.8 100 113-274 20-119 (186)
11 TIGR01596 cas3_HD CRISPR-assoc 89.8 0.14 2.9E-06 43.0 0.9 34 125-158 2-47 (177)
12 TIGR00295 conserved hypothetic 87.5 1.1 2.4E-05 39.1 5.1 79 223-309 61-143 (164)
13 COG2316 Predicted hydrolase (H 86.3 0.81 1.7E-05 42.5 3.6 55 98-158 28-86 (212)
14 PF08668 HDOD: HDOD domain; I 86.2 1.5 3.3E-05 37.8 5.1 126 92-252 47-194 (196)
15 cd00077 HDc Metal dependent ph 86.1 0.35 7.7E-06 36.4 1.0 35 124-158 3-44 (145)
16 PRK12705 hypothetical protein; 85.9 1.7 3.7E-05 45.2 6.1 93 103-259 305-401 (508)
17 PRK12703 tRNA 2'-O-methylase; 78.7 2.8 6E-05 41.7 4.3 92 93-253 163-258 (339)
18 PRK07152 nadD putative nicotin 72.8 2.3 5E-05 41.0 2.0 88 123-253 196-288 (342)
19 TIGR02621 cas3_GSU0051 CRISPR- 70.1 3.1 6.8E-05 45.8 2.5 36 123-158 675-716 (844)
20 PRK03381 PII uridylyl-transfer 65.7 12 0.00027 40.4 5.8 35 122-156 419-456 (774)
21 COG2206 c-di-GMP phosphodieste 62.9 6.9 0.00015 38.0 3.1 50 106-159 134-191 (344)
22 PRK12704 phosphodiesterase; Pr 61.6 10 0.00022 39.4 4.2 54 103-158 317-374 (520)
23 PRK01759 glnD PII uridylyl-tra 61.0 17 0.00038 39.7 6.0 35 122-156 435-487 (854)
24 PRK05007 PII uridylyl-transfer 59.6 16 0.00034 40.2 5.3 35 122-156 460-512 (884)
25 KOG0668 Casein kinase II, alph 58.2 9.9 0.00021 37.5 3.2 77 224-307 251-330 (338)
26 COG1505 Serine proteases of th 56.7 6.7 0.00015 42.2 2.0 94 181-285 474-573 (648)
27 PRK10885 cca multifunctional t 55.8 7 0.00015 39.2 1.8 36 122-158 226-261 (409)
28 TIGR03760 ICE_TraI_Pfluor inte 54.8 10 0.00022 35.3 2.6 15 145-159 108-122 (218)
29 PF13328 HD_4: HD domain; PDB: 54.5 11 0.00023 32.1 2.5 47 107-154 3-49 (153)
30 PF15608 PELOTA_1: PELOTA RNA 53.9 30 0.00065 29.3 5.0 55 76-134 16-78 (100)
31 PRK00227 glnD PII uridylyl-tra 53.7 28 0.00061 37.7 6.0 37 122-158 379-418 (693)
32 PRK00275 glnD PII uridylyl-tra 52.1 23 0.0005 39.1 5.2 36 122-157 459-512 (895)
33 PRK13480 3'-5' exoribonuclease 51.7 10 0.00022 37.2 2.1 33 128-160 167-201 (314)
34 TIGR02692 tRNA_CCA_actino tRNA 50.3 70 0.0015 32.4 7.9 37 122-158 257-295 (466)
35 PRK03059 PII uridylyl-transfer 47.5 33 0.00072 37.7 5.5 35 122-156 439-491 (856)
36 PRK05092 PII uridylyl-transfer 46.8 12 0.00027 41.1 2.1 34 123-156 493-544 (931)
37 COG1418 Predicted HD superfami 45.0 28 0.0006 32.3 3.8 39 122-160 35-77 (222)
38 COG1639 Predicted signal trans 43.5 33 0.00071 33.7 4.2 132 88-253 65-217 (289)
39 COG3481 Predicted HD-superfami 42.2 28 0.00061 34.2 3.6 90 127-263 148-239 (287)
40 PF06784 UPF0240: Uncharacteri 41.0 22 0.00048 32.3 2.5 34 95-139 113-146 (179)
41 KOG4481 Uncharacterized conser 40.4 26 0.00056 32.7 2.8 34 95-139 112-145 (194)
42 PRK04374 PII uridylyl-transfer 39.9 25 0.00055 38.8 3.2 35 122-156 448-500 (869)
43 PF00307 CH: Calponin homology 36.8 63 0.0014 24.8 4.1 43 271-315 2-47 (108)
44 COG1713 Predicted HD superfami 35.7 39 0.00085 31.4 3.2 49 103-158 4-56 (187)
45 TIGR03401 cyanamide_fam HD dom 35.0 34 0.00073 32.0 2.8 36 122-157 57-97 (228)
46 TIGR01693 UTase_glnD [Protein- 34.6 22 0.00048 38.6 1.7 34 123-156 428-479 (850)
47 PTZ00100 DnaJ chaperone protei 32.1 1.2E+02 0.0026 26.2 5.4 52 83-141 41-96 (116)
48 PRK08071 L-aspartate oxidase; 31.5 50 0.0011 33.6 3.5 72 85-157 415-507 (510)
49 COG1023 Gnd Predicted 6-phosph 30.6 70 0.0015 31.7 4.1 62 98-172 178-251 (300)
50 TIGR00691 spoT_relA (p)ppGpp s 30.4 51 0.0011 35.5 3.5 33 120-154 16-49 (683)
51 PF12477 TraW_N: Sex factor F 30.1 19 0.00041 24.5 0.2 12 168-179 20-31 (31)
52 PF07514 TraI_2: Putative heli 29.4 21 0.00046 34.9 0.5 36 124-159 67-121 (327)
53 COG0647 NagD Predicted sugar p 28.2 1E+02 0.0022 29.7 4.8 97 96-215 48-171 (269)
54 PRK10119 putative hydrolase; P 27.7 1.1E+02 0.0023 29.0 4.7 48 109-156 14-62 (231)
55 TIGR02578 cas_TM1811_Csm1 CRIS 27.1 23 0.0005 37.9 0.3 14 146-159 2-15 (648)
56 PF04986 Y2_Tnp: Putative tran 26.6 24 0.00053 31.4 0.3 33 219-255 145-177 (183)
57 PRK14068 exodeoxyribonuclease 26.1 1.1E+02 0.0023 24.5 3.8 41 97-137 3-44 (76)
58 COG3437 Response regulator con 25.9 1.1E+02 0.0023 31.3 4.7 53 102-158 168-227 (360)
59 COG4820 EutJ Ethanolamine util 25.3 36 0.00079 33.0 1.2 79 129-212 187-271 (277)
60 PRK13298 tRNA CCA-pyrophosphor 24.2 77 0.0017 32.5 3.4 35 123-158 228-262 (417)
61 PRK11092 bifunctional (p)ppGpp 24.1 1.1E+02 0.0023 33.4 4.6 51 102-154 23-74 (702)
62 PRK14064 exodeoxyribonuclease 24.1 1.3E+02 0.0028 23.9 4.0 42 97-138 3-45 (75)
63 PF04572 Gb3_synth: Alpha 1,4- 22.7 77 0.0017 27.0 2.6 67 245-313 58-127 (135)
64 KOG2155 Tubulin-tyrosine ligas 22.4 46 0.001 35.4 1.4 18 132-149 373-390 (631)
65 TIGR01346 isocit_lyase isocitr 21.4 79 0.0017 33.7 2.9 40 119-158 386-441 (527)
66 PF03656 Pam16: Pam16; InterP 21.3 33 0.00071 29.9 0.1 32 98-131 53-85 (127)
No 1
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=100.00 E-value=2.7e-143 Score=988.71 Aligned_cols=251 Identities=70% Similarity=1.217 Sum_probs=201.4
Q ss_pred hhhHHHHHHHHHhhhhchHHHHHHHHHHHccCCCccccHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHHHHhcCCCCC
Q 021203 64 ERQKSVEEFYRLQHINQTYDFVKKMREEYAKLDKAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDED 143 (316)
Q Consensus 64 ~r~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pd 143 (316)
+|++||++|||+||++||||||++||++|++++|++|||||||++||+||||||||+|+|||+||||||||||+|||+||
T Consensus 3 ~~~~~V~~~Y~~~h~~QTv~fv~~~~~~~~~~~~~~Mti~eA~~~L~~LvDeSDPD~d~~~i~H~lQTAEaiR~d~~~~d 82 (253)
T PF05153_consen 3 EACDRVKEFYRLQHTNQTVDFVKKMRAKYLKFDHAEMTIWEALELLNTLVDESDPDTDLPQIQHALQTAEAIRRDHPDPD 82 (253)
T ss_dssp --HHHHHHHHHHHHCC--HHHHHHHHHHHTT--SEEE-HHHHHHHGGG---TT-TT--S-HHHHHHHHHHHHHHHSTT-H
T ss_pred cHhHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCcceeeHHHHHHHHHHhccCccCCCchhHHHHHHHHHHHHHHhCCCcc
Confidence 35667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhcccchhcccCCCCCCCceEeccceeeccccCCCcccccccccCCCCCCCCCCCCCCcccCCCCcccccccc
Q 021203 144 WLHLTALIHDLGKVLTLPKFGGLPQWAVVGDTFPLGCAFDESNVHHKYFKENPDSNNPAYNTKNGIYTEGCGLDNVMISW 223 (316)
Q Consensus 144 W~qLtGLiHDLGKvl~~~~fg~~pQW~VVGDTfPvGC~f~~~iv~~~~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSW 223 (316)
|||||||||||||||++ ||++|||+||||||||||+|+++|||+++|++|||.+||+|||++|||+||||||||+|||
T Consensus 83 W~~LtGLiHDLGKvl~~--~~~e~QW~vvGDTfpVGC~f~~~iv~~e~f~~NpD~~~~~YnTk~GiY~~~CGLdnv~msW 160 (253)
T PF05153_consen 83 WMQLTGLIHDLGKVLAL--FGGEPQWAVVGDTFPVGCAFSESIVFPEFFKDNPDSKNPRYNTKYGIYEPNCGLDNVMMSW 160 (253)
T ss_dssp HHHHHHHHTTGGGHHHH--C-T--GGGTSS---BSSS---TTSTTCCC-TT-GGGCSTTTSSSSTT--TT--GGGS-B-S
T ss_pred hhhheehhccchhhhhh--hcCCCCceeecCceeEecccCccccChhhHhhCCCCCCccccCCCCccCCCCCccceeecC
Confidence 99999999999999999 9899999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHhcCCCCCcchhhhhhhccccccccCCcccccCChhhHHHHHHHHHcCCccccccCCCCCChhhhhhchH
Q 021203 224 GHDDYMYLVAKENGTTLPSAGLFIVRYHSFYPLHKEGAYAHLMNEEDKENLKWLQVFNKYDLYSKSKVLVDVEKVKPYYL 303 (316)
Q Consensus 224 GHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~hL~ne~D~~~l~wV~~Fn~yDLYSKs~~~pdve~lkPYY~ 303 (316)
|||||||+|||+|+||||+|||+|||||||||||++|||+||||++|.+||+||++|||||||||++++||||+|||||+
T Consensus 161 gHDEYlY~Vlk~n~~tLP~eaL~mIRyhSfypwH~~~~Y~~L~~~~D~~~l~wv~~Fn~~dLYSK~~~~pdve~l~PYY~ 240 (253)
T PF05153_consen 161 GHDEYLYQVLKHNKSTLPEEALYMIRYHSFYPWHREGAYDHLMNEEDEEMLKWVKEFNKYDLYSKSDEPPDVEELKPYYQ 240 (253)
T ss_dssp SHHHHHHHHHHHCT----HHHHHHHHHTT-HHHHTTS--TTT--HHHHHHHHHHHHHHHHHHHT--SS---HCCCHHHHH
T ss_pred CchHHHHHHHHcccCccCHHHHHHHHHhccccccccchhhHhhccCcHHHHHHHHHhCCcceeeCCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCC
Q 021203 304 SLIEKYFPAKLRW 316 (316)
Q Consensus 304 ~LIdKY~P~~L~W 316 (316)
+|||||||++|+|
T Consensus 241 ~LidKy~P~~l~W 253 (253)
T PF05153_consen 241 SLIDKYFPGKLKW 253 (253)
T ss_dssp HHHHHHS-S-EEE
T ss_pred HHHHHHCCCcCCC
Confidence 9999999999999
No 2
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=100.00 E-value=1.6e-97 Score=657.76 Aligned_cols=199 Identities=75% Similarity=1.271 Sum_probs=189.8
Q ss_pred CccccCCCC--CCCCCCCCcccCccccCCccc-hhhhhHHHHHHHHHhhhhchHHHHHHHHHHHccCCCccccHHHHHHH
Q 021203 32 GFVVPKTMP--NDGFVAPEINSFGKTFRDYNA-ECERQKSVEEFYRLQHINQTYDFVKKMREEYAKLDKAEMSIWECCEL 108 (316)
Q Consensus 32 ~~~~~~~~~--~~~f~~p~~~~~~~~fR~Y~~-~~~r~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~ 108 (316)
+++++|.++ .+.|.+|++++++.+||+|++ +++|++||+.|||.||+|||||||++||++|+||++.+||||||||+
T Consensus 2 ~~~~~~d~s~v~e~~~~pe~~a~g~~fRdY~dt~~p~q~rV~~~Y~~qH~~QTvDFVk~mr~~~gkf~~~kM~i~ec~el 81 (204)
T KOG1573|consen 2 RTIMSKDSSVVDEPFVAPEVNADGRQFRDYDDTEDPLQKRVRTTYRTQHTNQTVDFVKKMRAEYGKFDKMKMTIWECCEL 81 (204)
T ss_pred CcccCCCCccccCCCCChhhhcchhhhccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcccchhheeHHHHHHH
Confidence 456666644 567999999999999999954 78999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCCCCchHHHHHHHHHHHHHhcCCCCCchhhhhhhhcccchhcccCCCCCCCceEeccceeeccccCCCccc
Q 021203 109 LNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALIHDLGKVLTLPKFGGLPQWAVVGDTFPLGCAFDESNVH 188 (316)
Q Consensus 109 Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGLiHDLGKvl~~~~fg~~pQW~VVGDTfPvGC~f~~~iv~ 188 (316)
||++|||||||+|+|||+||||||||||++||+.||||||||||||||||. |||+||||||||||||||+|++||||
T Consensus 82 l~~~vDESDPDlDepni~Ha~QtAE~iR~~~Pd~dWlHLtaLiHDLGKvl~---f~GepQWAVvGDTfpVGC~~~~s~V~ 158 (204)
T KOG1573|consen 82 LNEVVDESDPDLDEPNIQHALQTAEAIRKDYPDEDWLHLTALIHDLGKVLA---FGGEPQWAVVGDTFPVGCAFDASNVH 158 (204)
T ss_pred HHhhhcccCCCCchHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHH---hcCCcceeeecCccccccccccccee
Confidence 999999999999999999999999999999999999999999999999995 58899999999999999999999999
Q ss_pred c-cccccCCCCCCCCCCCCCCcccCCCCccccccccCchhHHHHHH
Q 021203 189 H-KYFKENPDSNNPAYNTKNGIYTEGCGLDNVMISWGHDDYMYLVA 233 (316)
Q Consensus 189 ~-~~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vl 233 (316)
+ ++|.+|||.+||+|||+.|||+||||||||+||||||||||+|+
T Consensus 159 ~d~~F~~NpD~~np~YnT~~GiYqe~CGldnvlMsWgHDeYMY~V~ 204 (204)
T KOG1573|consen 159 HDKYFDGNPDINNPKYNTKLGIYQEGCGLDNVLMSWGHDEYMYLVA 204 (204)
T ss_pred chhhccCCCCCCCcccccccccccCCCChhHHHhhcccccceeecC
Confidence 6 99999999999999999999999999999999999999999984
No 3
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=97.21 E-value=0.00041 Score=62.75 Aligned_cols=144 Identities=18% Similarity=0.191 Sum_probs=90.9
Q ss_pred HHHHHHHHhhhCCCCCCCCchHHHHHHHHHHHHHhcCCCCCchhhhhhhhcccchhcccCCCCCCCceEeccceeecccc
Q 021203 103 WECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALIHDLGKVLTLPKFGGLPQWAVVGDTFPLGCAF 182 (316)
Q Consensus 103 ~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGLiHDLGKvl~~~~fg~~pQW~VVGDTfPvGC~f 182 (316)
-+-..++.......----..+|++|+||||...++++-++++ .+.+|+||+|.++.- .+ ++.
T Consensus 5 ~~i~~l~~~~g~~~y~Ge~Vs~leH~LQ~A~lA~~~Gad~el-vvAALLHDIGhll~~--~~---------~~~------ 66 (179)
T TIGR03276 5 DEIFALFDEHGARQYGGEAVSQLEHALQCAQLAEAAGADDEL-IVAAFLHDIGHLLAD--EG---------ATP------ 66 (179)
T ss_pred HHHHHHHHhcCccccCCCCCcHHHHHHHHHHHHHHcCCCHHH-HHHHHHHhcchhhhc--cc---------ccc------
Confidence 333444444443332124589999999999999999866565 899999999998732 12 110
Q ss_pred CCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhHHHHHHHhcCCCCCcchhhhhhhcc----cccccc
Q 021203 183 DESNVHHKYFKENPDSNNPAYNTKNGIYTEGCGLDNVMISWGHDDYMYLVAKENGTTLPSAGLFIVRYHS----FYPLHK 258 (316)
Q Consensus 183 ~~~iv~~~~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHS----FYpwH~ 258 (316)
+..|+ .+.|++.==..|+. .+|++...+||.|. ++---.
T Consensus 67 ----------------------~~~g~------------~~~He~iga~~Lr~---~F~~~V~~lV~~Hv~aKryl~a~~ 109 (179)
T TIGR03276 67 ----------------------MGRGG------------DDHHEELAADYLRE---LFSPSVTEPIRLHVQAKRYLCAVD 109 (179)
T ss_pred ----------------------cccCC------------CccHHHHHHHHHHH---HcCHHHHHHHHHHHHHHHHHHccC
Confidence 11222 23588888888886 39999999999886 221112
Q ss_pred CCccccc--------------CChhhHHHHH------HHHHcCCccccccCCC--CCChhhhhhc
Q 021203 259 EGAYAHL--------------MNEEDKENLK------WLQVFNKYDLYSKSKV--LVDVEKVKPY 301 (316)
Q Consensus 259 ~gaY~hL--------------~ne~D~~~l~------wV~~Fn~yDLYSKs~~--~pdve~lkPY 301 (316)
.+-|.+| |+++..+.++ -.-.|-+||==+|.+. .|+++..+|.
T Consensus 110 p~Y~~~LS~aS~~sL~~QGG~~~~~e~~~f~~~p~~~dav~lR~wDd~ak~~~~~~~~l~~~~~~ 174 (179)
T TIGR03276 110 PAYAESLSPASRRSLELQGGPFTAAEADAFERDPHAADAIRLRRWDDLAKDPGVPTPDLDHFMPL 174 (179)
T ss_pred hHHHHHcCHHHHhHHHHcCCCCCHHHHHHHHhCccHHHHHHHHHcchhccCCCCCCCCHHHHHHH
Confidence 2233455 6666654432 2223678888888875 5666654443
No 4
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=95.39 E-value=0.022 Score=41.27 Aligned_cols=29 Identities=21% Similarity=0.053 Sum_probs=23.4
Q ss_pred cccCchhHHHHHHHhcCCCCCcchhhhhhhc
Q 021203 221 ISWGHDDYMYLVAKENGTTLPSAGLFIVRYH 251 (316)
Q Consensus 221 mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyH 251 (316)
...+|.+.=..+++. ..+|++...+||+|
T Consensus 49 ~~~~H~~~g~~~l~~--~~~~~~~~~~I~~H 77 (80)
T TIGR00277 49 IFESHAVVGAEIARK--YGEPLEVIDIIAEH 77 (80)
T ss_pred HHHchHHHHHHHHHH--cCCCHHHHHHHHHH
Confidence 345777777888875 47999999999998
No 5
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=95.25 E-value=0.012 Score=43.87 Aligned_cols=39 Identities=33% Similarity=0.312 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHHHHhcC---C--CCCchhhhhhhhcccchhcc
Q 021203 122 EPQIQHLLQSAEAIRKDY---P--DEDWLHLTALIHDLGKVLTL 160 (316)
Q Consensus 122 l~qi~H~lQTAEaiR~d~---p--~pdW~qLtGLiHDLGKvl~~ 160 (316)
.+.++|.+++|..++.-. + +.+.+-++||+||+||....
T Consensus 3 ~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~~~~~ 46 (124)
T smart00471 3 YHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPGTP 46 (124)
T ss_pred chHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccCccCC
Confidence 466788888877765332 1 34678899999999998843
No 6
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=94.14 E-value=0.031 Score=47.92 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=29.3
Q ss_pred chHHHHHHHHHHHHH----hcCCCCCchhhhhhhhcccchh
Q 021203 122 EPQIQHLLQSAEAIR----KDYPDEDWLHLTALIHDLGKVL 158 (316)
Q Consensus 122 l~qi~H~lQTAEaiR----~d~p~pdW~qLtGLiHDLGKvl 158 (316)
..-.+|.+.+|...| +-+++++...++||+||+||.+
T Consensus 7 ~~r~~Hsl~Va~~a~~lA~~~~~d~e~a~~AGLLHDIGk~~ 47 (158)
T TIGR00488 7 EHRYQHCLGVGQTAKQLAEANKLDSKKAEIAGAYHDLAKFL 47 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhccC
Confidence 456789999887654 3346789999999999999953
No 7
>PRK00106 hypothetical protein; Provisional
Probab=92.59 E-value=0.3 Score=50.92 Aligned_cols=88 Identities=9% Similarity=0.069 Sum_probs=65.6
Q ss_pred HHHHHHHHhhhCCCCCCCCchHHHHHHHHHHHH----HhcCCCCCchhhhhhhhcccchhcccCCCCCCCceEeccceee
Q 021203 103 WECCELLNEVVDESDPDLDEPQIQHLLQSAEAI----RKDYPDEDWLHLTALIHDLGKVLTLPKFGGLPQWAVVGDTFPL 178 (316)
Q Consensus 103 ~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEai----R~d~p~pdW~qLtGLiHDLGKvl~~~~fg~~pQW~VVGDTfPv 178 (316)
.|++.+|-.|-.-++-+. ....|.+.+|... +.-+.++++.-++||+||+||++-.
T Consensus 332 ~e~~~~lg~l~~r~sy~q--nl~~HSv~VA~lA~~lA~~lgld~e~a~~AGLLHDIGK~v~~------------------ 391 (535)
T PRK00106 332 PDLIKIMGRLQFRTSYGQ--NVLRHSVEVGKLAGILAGELGENVALARRAGFLHDMGKAIDR------------------ 391 (535)
T ss_pred HHHHHHHHHHhhhccCCC--cHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCccCc------------------
Confidence 578888888866554443 4679999998875 3445678999999999999998510
Q ss_pred ccccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhHHHHHHHhcCCCCCcchhhhhhhccc
Q 021203 179 GCAFDESNVHHKYFKENPDSNNPAYNTKNGIYTEGCGLDNVMISWGHDDYMYLVAKENGTTLPSAGLFIVRYHSF 253 (316)
Q Consensus 179 GC~f~~~iv~~~~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSF 253 (316)
.+ ..+|.+.=+.+++.. .+|++-+.+|++|--
T Consensus 392 -----------------------------e~------------~g~Ha~iGa~ll~~~--~~~~~v~~aI~~HH~ 423 (535)
T PRK00106 392 -----------------------------EV------------EGSHVEIGMEFARKY--KEHPVVVNTIASHHG 423 (535)
T ss_pred -----------------------------cc------------cCChHHHHHHHHHHc--CCCHHHHHHHHHhCC
Confidence 00 115888889999865 489999999998743
No 8
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=92.43 E-value=0.046 Score=41.70 Aligned_cols=34 Identities=35% Similarity=0.635 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHh---cCC---CCCchhhhhhhhcccchh
Q 021203 125 IQHLLQSAEAIRK---DYP---DEDWLHLTALIHDLGKVL 158 (316)
Q Consensus 125 i~H~lQTAEaiR~---d~p---~pdW~qLtGLiHDLGKvl 158 (316)
++|.+.+|+.+++ ..+ +.+++.++||+||+||..
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk~~ 41 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGLEEDRELLRIAALLHDIGKIP 41 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTHHS
T ss_pred hhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCCCC
Confidence 5677776665543 222 567899999999999998
No 9
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=91.28 E-value=0.51 Score=48.67 Aligned_cols=88 Identities=18% Similarity=0.134 Sum_probs=61.4
Q ss_pred HHHHHHHHhhhCCCCCCCCchHHHHHHHHHHHH----HhcCCCCCchhhhhhhhcccchhcccCCCCCCCceEeccceee
Q 021203 103 WECCELLNEVVDESDPDLDEPQIQHLLQSAEAI----RKDYPDEDWLHLTALIHDLGKVLTLPKFGGLPQWAVVGDTFPL 178 (316)
Q Consensus 103 ~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEai----R~d~p~pdW~qLtGLiHDLGKvl~~~~fg~~pQW~VVGDTfPv 178 (316)
.+++.+|..|---+....+ ...|.+.+|... +.-+.+++...+.||+||+||++..
T Consensus 311 ~~~~~~l~~l~~r~~~~~~--~l~Hs~~VA~lA~~LA~~lgld~~~a~~AGLLHDIGK~~~~------------------ 370 (514)
T TIGR03319 311 PELIKLLGRLKFRTSYGQN--VLQHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIGKAVDH------------------ 370 (514)
T ss_pred HHHHHHHHHhhccccCCcc--HHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCcccch------------------
Confidence 4677777775433222222 467998887764 3445678899999999999997400
Q ss_pred ccccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhHHHHHHHhcCCCCCcchhhhhhhccc
Q 021203 179 GCAFDESNVHHKYFKENPDSNNPAYNTKNGIYTEGCGLDNVMISWGHDDYMYLVAKENGTTLPSAGLFIVRYHSF 253 (316)
Q Consensus 179 GC~f~~~iv~~~~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSF 253 (316)
+ + -.+|..+=+.+++. ..+|++...+|++|.-
T Consensus 371 -----------e------------------~------------~~~H~~~Ga~ll~~--~~~~~~V~~aI~~HH~ 402 (514)
T TIGR03319 371 -----------E------------------V------------EGSHVEIGAELAKK--YKESPEVVNAIAAHHG 402 (514)
T ss_pred -----------h------------------h------------cccHHHHHHHHHHH--cCCCHHHHHHHHHhCC
Confidence 0 0 02588888888876 4589999999999975
No 10
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=90.77 E-value=0.4 Score=44.04 Aligned_cols=100 Identities=28% Similarity=0.348 Sum_probs=64.8
Q ss_pred hCCCCCCCCchHHHHHHHHHHHHHhcCCCCCchhhhhhhhcccchhcccCCCCCCCceEeccceeeccccCCCccccccc
Q 021203 113 VDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALIHDLGKVLTLPKFGGLPQWAVVGDTFPLGCAFDESNVHHKYF 192 (316)
Q Consensus 113 vDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGLiHDLGKvl~~~~fg~~pQW~VVGDTfPvGC~f~~~iv~~~~F 192 (316)
-|++=----++|.+|+||+|-..-+||- ++=+.-..|+||+|-+..- +|. |.
T Consensus 20 g~e~y~ge~VTq~eHaLQ~AtlAerdGa-~~~lVaaALLHDiGhl~~~--~g~---------~p---------------- 71 (186)
T COG4341 20 GDEGYSGEPVTQLEHALQCATLAERDGA-DTALVAAALLHDIGHLYAD--YGH---------TP---------------- 71 (186)
T ss_pred cccccccCcchhhhhHHHHhHHHHhcCC-cHHHHHHHHHHhHHHHhhh--cCC---------Cc----------------
Confidence 3444333347899999999999999984 4445578999999999832 442 21
Q ss_pred ccCCCCCCCCCCCCCCcccCCCCccccccccCchhHHHHHHHhcCCCCCcchhhhhhhccccccccCCcccccCChhhHH
Q 021203 193 KENPDSNNPAYNTKNGIYTEGCGLDNVMISWGHDDYMYLVAKENGTTLPSAGLFIVRYHSFYPLHKEGAYAHLMNEEDKE 272 (316)
Q Consensus 193 ~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~hL~ne~D~~ 272 (316)
+ .-|+|.- =|+|.==-||.. -.|+-.-.-||.| =|+=++||+ -|.+
T Consensus 72 --------------s-----~~~i~d~----~hee~~~~vL~~---~f~~~v~e~vrlH-------v~akR~lca-~~p~ 117 (186)
T COG4341 72 --------------S-----AAGIDDP----FHEEFATPVLRK---LFPPFVREPVRLH-------VGAKRYLCA-VDPA 117 (186)
T ss_pred --------------c-----ccccchh----HHHHHhHHHHHH---hCcHHHHHHHHHH-------Hhhhhhhhc-cChH
Confidence 0 1122222 366766677765 4677777788866 366677887 4544
Q ss_pred HH
Q 021203 273 NL 274 (316)
Q Consensus 273 ~l 274 (316)
-.
T Consensus 118 Yf 119 (186)
T COG4341 118 YF 119 (186)
T ss_pred HH
Confidence 43
No 11
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Probab=89.85 E-value=0.14 Score=43.03 Aligned_cols=34 Identities=38% Similarity=0.483 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHh----------cC--CCCCchhhhhhhhcccchh
Q 021203 125 IQHLLQSAEAIRK----------DY--PDEDWLHLTALIHDLGKVL 158 (316)
Q Consensus 125 i~H~lQTAEaiR~----------d~--p~pdW~qLtGLiHDLGKvl 158 (316)
.+|++.||+..+. .. ...+++-+.|++||+||+-
T Consensus 2 ~~H~~~v~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~lHDiGK~~ 47 (177)
T TIGR01596 2 NEHLLDVAAVAEKLKNLDIVIADLIGKLLRELLDLLALLHDIGKIN 47 (177)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHhhHHHHHHHHHHHHccCccCC
Confidence 3677777776553 11 1358999999999999976
No 12
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=87.46 E-value=1.1 Score=39.06 Aligned_cols=79 Identities=14% Similarity=0.012 Sum_probs=43.3
Q ss_pred cCchhHHHHHHHhcCCCCCcchhhhhhhcccc--ccccCCcccccCChhhH--HHHHHHHHcCCccccccCCCCCChhhh
Q 021203 223 WGHDDYMYLVAKENGTTLPSAGLFIVRYHSFY--PLHKEGAYAHLMNEEDK--ENLKWLQVFNKYDLYSKSKVLVDVEKV 298 (316)
Q Consensus 223 WGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFY--pwH~~gaY~hL~ne~D~--~~l~wV~~Fn~yDLYSKs~~~pdve~l 298 (316)
+.|.+.=|.+|+. ..+|++.+.+|+.|... |-+..+.+ .+. +.|. ..+ --+...=.|-+++.+..+.+|+
T Consensus 61 ~~H~~~G~~iL~~--~g~~~~i~~iI~~H~~~g~p~~~~~~~-~l~-~~~~~p~t~-ea~IV~~AD~l~~~~~~~~~e~- 134 (164)
T TIGR00295 61 FEHFVKGAEILRK--EGVDEKIVRIAERHFGAGINAEEASKL-GLP-PKDYMPETL-EEKIVAHADNLIMGVREVTIDE- 134 (164)
T ss_pred CCHHHHHHHHHHH--cCCCHHHHHHHHHHhCCCCchhhHhhc-CCC-cccCCCCCH-HHHHHHHHHHhccccccccHHH-
Confidence 3799999999986 46799999999987543 22111111 111 0110 000 0112233466666666666665
Q ss_pred hhchHHHHHHH
Q 021203 299 KPYYLSLIEKY 309 (316)
Q Consensus 299 kPYY~~LIdKY 309 (316)
++..+-++|
T Consensus 135 --~~~~~~~~~ 143 (164)
T TIGR00295 135 --VIKKLEERL 143 (164)
T ss_pred --HHHHHHHHh
Confidence 556666665
No 13
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]
Probab=86.26 E-value=0.81 Score=42.48 Aligned_cols=55 Identities=33% Similarity=0.327 Sum_probs=42.0
Q ss_pred ccccHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHHHHhc----CCCCCchhhhhhhhcccchh
Q 021203 98 AEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKD----YPDEDWLHLTALIHDLGKVL 158 (316)
Q Consensus 98 ~~MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d----~p~pdW~qLtGLiHDLGKvl 158 (316)
+.||-.||+++|.+.|-. .+.+.|++.++..+|-- +-+..=--++||+||+--=+
T Consensus 28 ~~i~r~ea~eLlk~hv~~------e~L~kHcla~eavMr~lARe~gEDEEkw~~~GlLHD~DYe~ 86 (212)
T COG2316 28 AAINRDEAYELLKEHVPS------ESLQKHCLAVEAVMRWLAREWGEDEEKWAVTGLLHDFDYEL 86 (212)
T ss_pred HhhcchHHHHHHHHhCCc------HHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhhhccHHh
Confidence 468889999999998854 68899999999988732 22333346899999986444
No 14
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These members appear to be involved in the nucleic acid metabolism and signal transduction or possibly other functions and are restricted to bacteria, primarily the proteobacteria. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; PDB: 1VQR_D 3LJX_A 3P3Q_B 3MEM_A 3M1T_A 3HC1_A 3I7A_A.
Probab=86.21 E-value=1.5 Score=37.77 Aligned_cols=126 Identities=23% Similarity=0.291 Sum_probs=71.5
Q ss_pred HccCCCccccHHHHHHHHH--------------hhhCCCC-CCCC-chHHHHHHHHHHHHHh----cC-CCCCchhhhhh
Q 021203 92 YAKLDKAEMSIWECCELLN--------------EVVDESD-PDLD-EPQIQHLLQSAEAIRK----DY-PDEDWLHLTAL 150 (316)
Q Consensus 92 ~~~~~~~~MsI~EA~e~Ln--------------~lvDeSD-PD~d-l~qi~H~lQTAEaiR~----d~-p~pdW~qLtGL 150 (316)
+.++.+.-.||.+|+-.|= .....+. .... ..-..|.+.+|..+++ .. .++|-.-++||
T Consensus 47 ~~~~~~~i~sl~~Ai~~LG~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~a~~la~~~~~~~~~~a~~~gL 126 (196)
T PF08668_consen 47 YFGLRRPISSLEQAISRLGLDRIRNLALALSLRSLFPSSPPYQFNLERFWRHSLAAAAIARRLARELGFDDPDEAYLAGL 126 (196)
T ss_dssp TTTSTST--SHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCTTSCHHHHHHHHHHHHHHHHHHHHHCTCCHHHHHHHHHH
T ss_pred hcCCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHHHccccchhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3345566679999987653 1122222 1222 3345899999888763 22 23588889999
Q ss_pred hhcccchhcccCCCCCCCc-eEeccceeeccccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhHH
Q 021203 151 IHDLGKVLTLPKFGGLPQW-AVVGDTFPLGCAFDESNVHHKYFKENPDSNNPAYNTKNGIYTEGCGLDNVMISWGHDDYM 229 (316)
Q Consensus 151 iHDLGKvl~~~~fg~~pQW-~VVGDTfPvGC~f~~~iv~~~~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYl 229 (316)
+||+|++++...+ |++ .-+.... +.++ . +-=-.++-.+.+.|.|==
T Consensus 127 L~~iG~l~l~~~~---~~~~~~~~~~~----------------~~~~------------~--~~~~~e~~~~g~~h~~lg 173 (196)
T PF08668_consen 127 LHDIGKLLLLSLF---PEYYEEILQEV----------------KQEP------------E--SREEAERELFGVTHAELG 173 (196)
T ss_dssp HTTHHHHHHHHHC---HHHHHHHHHHH----------------HHHC------------T--HHHHHHHHHHSSHHHHHH
T ss_pred HHHHhHHHHHHHh---HHHHHHHHHHH----------------HcCC------------C--CHHHHHHHHHcCCHHHHH
Confidence 9999999976222 111 1110000 0000 0 001233455666788888
Q ss_pred HHHHHhcCCCCCcchhhhhhhcc
Q 021203 230 YLVAKENGTTLPSAGLFIVRYHS 252 (316)
Q Consensus 230 Y~Vlk~n~stLP~eaL~mIRyHS 252 (316)
..++++ -.||++-...||+|-
T Consensus 174 ~~l~~~--W~lP~~i~~~i~~hh 194 (196)
T PF08668_consen 174 AALLRK--WGLPEEIVEAIRHHH 194 (196)
T ss_dssp HHHHHH--TT--HHHHHHHHHTT
T ss_pred HHHHHH--cCCCHHHHHHHHHHh
Confidence 888876 489999999999884
No 15
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=86.07 E-value=0.35 Score=36.45 Aligned_cols=35 Identities=37% Similarity=0.524 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhcC-------CCCCchhhhhhhhcccchh
Q 021203 124 QIQHLLQSAEAIRKDY-------PDEDWLHLTALIHDLGKVL 158 (316)
Q Consensus 124 qi~H~lQTAEaiR~d~-------p~pdW~qLtGLiHDLGKvl 158 (316)
...|.++++..+..-. .+++-+-+.||+||+||..
T Consensus 3 ~~~Hs~~v~~~~~~~~~~~~~~~~~~~~l~~aaLlHDig~~~ 44 (145)
T cd00077 3 RFEHSLRVAQLARRLAEELGLSEEDIELLRLAALLHDIGKPG 44 (145)
T ss_pred hHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCcc
Confidence 4566666555444321 2356777899999999987
No 16
>PRK12705 hypothetical protein; Provisional
Probab=85.88 E-value=1.7 Score=45.22 Aligned_cols=93 Identities=17% Similarity=0.126 Sum_probs=62.0
Q ss_pred HHHHHHHHhhhCCCCCCCCchHHHHHHHHHHHHH----hcCCCCCchhhhhhhhcccchhcccCCCCCCCceEeccceee
Q 021203 103 WECCELLNEVVDESDPDLDEPQIQHLLQSAEAIR----KDYPDEDWLHLTALIHDLGKVLTLPKFGGLPQWAVVGDTFPL 178 (316)
Q Consensus 103 ~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR----~d~p~pdW~qLtGLiHDLGKvl~~~~fg~~pQW~VVGDTfPv 178 (316)
.+++.+|-.|---+.+.. ..+.|.+.+|..++ +-+-+++-...+||+||+||+.- +.
T Consensus 305 ~~li~~Lg~L~~R~sygq--nvl~HSl~VA~lA~~LA~~lGld~d~a~~AGLLHDIGK~ie---------~e-------- 365 (508)
T PRK12705 305 PGLVRLLGRLYFRTSYGQ--NVLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGKSID---------RE-------- 365 (508)
T ss_pred HHHHHHHHHHhhcccCCc--hHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCCcch---------hh--------
Confidence 345555555422222222 36799999988764 33446677888999999999630 00
Q ss_pred ccccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhHHHHHHHhcCCCCCcchhhhhhhcccccccc
Q 021203 179 GCAFDESNVHHKYFKENPDSNNPAYNTKNGIYTEGCGLDNVMISWGHDDYMYLVAKENGTTLPSAGLFIVRYHSFYPLHK 258 (316)
Q Consensus 179 GC~f~~~iv~~~~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~ 258 (316)
+.-.|.+.=+.+++.. .+|++...+|++|.- ||..
T Consensus 366 ------------------------------------------~~~~H~~iGaeLlkk~--~~p~~Vv~aI~~HHe-~~~~ 400 (508)
T PRK12705 366 ------------------------------------------SDGNHVEIGAELARKF--NEPDEVINAIASHHN-KVNP 400 (508)
T ss_pred ------------------------------------------hcccHHHHHHHHHHhc--CCCHHHHHHHHHhCC-CCCC
Confidence 0126888888899864 699999999999874 4543
Q ss_pred C
Q 021203 259 E 259 (316)
Q Consensus 259 ~ 259 (316)
.
T Consensus 401 ~ 401 (508)
T PRK12705 401 E 401 (508)
T ss_pred C
Confidence 3
No 17
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=78.74 E-value=2.8 Score=41.68 Aligned_cols=92 Identities=21% Similarity=0.157 Sum_probs=63.6
Q ss_pred ccCCCccccHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHHHH----hcCCCCCchhhhhhhhcccchhcccCCCCCCC
Q 021203 93 AKLDKAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIR----KDYPDEDWLHLTALIHDLGKVLTLPKFGGLPQ 168 (316)
Q Consensus 93 ~~~~~~~MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR----~d~p~pdW~qLtGLiHDLGKvl~~~~fg~~pQ 168 (316)
+|.....++.-||+++|...--+ ...+.|.++.|...+ +.+.+.+=+.+.||+||+||....
T Consensus 163 gk~v~~ip~~ee~l~Ll~k~~~~------e~l~~Hs~rVa~lA~~LA~~~~~D~~ll~aAALLHDIGK~k~~-------- 228 (339)
T PRK12703 163 GKLVKIIPDEDQCLDLLKKYGAS------DLLIRHVKTVYKLAMRIADCINADRRLVAAGALLHDIGRTKTN-------- 228 (339)
T ss_pred cccccCCCCHHHHHHHHHHcCCC------hHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccccc--------
Confidence 44455578999999999987221 236889887665433 222355556679999999996410
Q ss_pred ceEeccceeeccccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhHHHHHHHhcCCCCCcchhhhh
Q 021203 169 WAVVGDTFPLGCAFDESNVHHKYFKENPDSNNPAYNTKNGIYTEGCGLDNVMISWGHDDYMYLVAKENGTTLPSAGLFIV 248 (316)
Q Consensus 169 W~VVGDTfPvGC~f~~~iv~~~~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mI 248 (316)
. ..|...=+++|+. ..+|++-+.+|
T Consensus 229 ----------------------------~-------------------------~~H~~~Ga~iL~e--~G~~e~i~~iI 253 (339)
T PRK12703 229 ----------------------------G-------------------------IDHAVAGAEILRK--ENIDDRVVSIV 253 (339)
T ss_pred ----------------------------C-------------------------CCHHHHHHHHHHH--CCCCHHHHHHH
Confidence 0 1477777888885 46789999999
Q ss_pred hhccc
Q 021203 249 RYHSF 253 (316)
Q Consensus 249 RyHSF 253 (316)
+.|.-
T Consensus 254 e~H~g 258 (339)
T PRK12703 254 ERHIG 258 (339)
T ss_pred HHHhc
Confidence 98884
No 18
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=72.80 E-value=2.3 Score=40.99 Aligned_cols=88 Identities=20% Similarity=0.149 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHHh----cCCCCCchhhhhhhhcccchhcccCCCCCCCceEeccceeeccccCCCcccccccccCCCC
Q 021203 123 PQIQHLLQSAEAIRK----DYPDEDWLHLTALIHDLGKVLTLPKFGGLPQWAVVGDTFPLGCAFDESNVHHKYFKENPDS 198 (316)
Q Consensus 123 ~qi~H~lQTAEaiR~----d~p~pdW~qLtGLiHDLGKvl~~~~fg~~pQW~VVGDTfPvGC~f~~~iv~~~~F~~NPD~ 198 (316)
.-..|.+.+|...+. -+.+++=..++||+||+||+..-..+ .+.++..
T Consensus 196 ~~~~HSl~VA~~A~~LA~~~g~d~~~a~~AGLLHDIGK~~~~~~~-------------------------~~~~~~~--- 247 (342)
T PRK07152 196 YRYKHCLRVAQLAAELAKKNNLDPKKAYYAGLYHDITKEWDEEKH-------------------------RKFLKKY--- 247 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhhccCCHHHH-------------------------HHHHHhc---
Confidence 456898888876542 23345666689999999997521000 0000100
Q ss_pred CCCCCCCCCCcccCCCCccccccccCchhHHHHHHHhcCCCCC-cchhhhhhhccc
Q 021203 199 NNPAYNTKNGIYTEGCGLDNVMISWGHDDYMYLVAKENGTTLP-SAGLFIVRYHSF 253 (316)
Q Consensus 199 ~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP-~eaL~mIRyHSF 253 (316)
+.+ .+...+...|.+.=+.++++. ..+| ++.+..||||--
T Consensus 248 ----~~~----------~~~~~~~~~H~~~Ga~ll~~~-~~~p~~~i~~aI~~Hh~ 288 (342)
T PRK07152 248 ----LKD----------VKNLPWYVLHQYVGALWLKHV-YGIDDEEILNAIRNHTS 288 (342)
T ss_pred ----CCc----------hhhcchHHHhHHHHHHHHHHH-cCCCcHHHHHHHHhccC
Confidence 000 001111236999999999863 4677 689999999873
No 19
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=70.13 E-value=3.1 Score=45.79 Aligned_cols=36 Identities=28% Similarity=0.288 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHh---cCCCCCc---hhhhhhhhcccchh
Q 021203 123 PQIQHLLQSAEAIRK---DYPDEDW---LHLTALIHDLGKVL 158 (316)
Q Consensus 123 ~qi~H~lQTAEaiR~---d~p~pdW---~qLtGLiHDLGKvl 158 (316)
+.-+|+..+|+..+. ..+-++| ..+.|+.|||||.-
T Consensus 675 ~L~eHl~~va~lA~~fa~~~gl~~~~~~~~laGllHDlGK~~ 716 (844)
T TIGR02621 675 ALSDHLDNVFEVAKNFVAKLGLGDLDKAVRQAARLHDLGKQR 716 (844)
T ss_pred EHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccccCC
Confidence 455999999888774 3446778 57999999999976
No 20
>PRK03381 PII uridylyl-transferase; Provisional
Probab=65.68 E-value=12 Score=40.42 Aligned_cols=35 Identities=34% Similarity=0.460 Sum_probs=25.9
Q ss_pred chHHHHHHHHHHHH---HhcCCCCCchhhhhhhhcccc
Q 021203 122 EPQIQHLLQSAEAI---RKDYPDEDWLHLTALIHDLGK 156 (316)
Q Consensus 122 l~qi~H~lQTAEai---R~d~p~pdW~qLtGLiHDLGK 156 (316)
.+.-+|.+.+-+.+ ...-..|+.+-|++|+||+||
T Consensus 419 ytVd~Htl~~l~~~~~~~~~~~~~~lL~lAaLlHDiGK 456 (774)
T PRK03381 419 WTVDRHLVETAVRAAALTRRVARPDLLLLGALLHDIGK 456 (774)
T ss_pred ChHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhhcC
Confidence 45557888875544 333446789999999999999
No 21
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=62.95 E-value=6.9 Score=37.95 Aligned_cols=50 Identities=24% Similarity=0.214 Sum_probs=31.4
Q ss_pred HHHHHhh-hCCCCCCCCchHHHHHHHHHHHHHhcC---CCC----Cchhhhhhhhcccchhc
Q 021203 106 CELLNEV-VDESDPDLDEPQIQHLLQSAEAIRKDY---PDE----DWLHLTALIHDLGKVLT 159 (316)
Q Consensus 106 ~e~Ln~l-vDeSDPD~dl~qi~H~lQTAEaiR~d~---p~p----dW~qLtGLiHDLGKvl~ 159 (316)
...+... ++..|+.| ..|-..+|+-.+.-+ +-+ .++-+.|++||+||+-.
T Consensus 134 ~~~~~~~~~~~kd~~t----~~Hs~~va~~a~~ia~~lgl~~~~i~~l~~aalLHDIGKi~i 191 (344)
T COG2206 134 LVALARGDIKAKDDYT----YGHSVRVAELAEAIAKKLGLSEEKIEELALAGLLHDIGKIGI 191 (344)
T ss_pred HHHHHHhcccccchhH----HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccccC
Confidence 3334444 66666655 567777776554322 222 35567999999999984
No 22
>PRK12704 phosphodiesterase; Provisional
Probab=61.62 E-value=10 Score=39.38 Aligned_cols=54 Identities=24% Similarity=0.223 Sum_probs=35.4
Q ss_pred HHHHHHHHhhhCCCCCCCCchHHHHHHHHHHHHH----hcCCCCCchhhhhhhhcccchh
Q 021203 103 WECCELLNEVVDESDPDLDEPQIQHLLQSAEAIR----KDYPDEDWLHLTALIHDLGKVL 158 (316)
Q Consensus 103 ~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR----~d~p~pdW~qLtGLiHDLGKvl 158 (316)
.+++.+|..| .-.|+.+. ....|.+.+|-..+ .-+.+++-.-+.||+||+||+.
T Consensus 317 ~~i~~ll~~l-~~R~~~~q-n~l~Hs~~Va~lA~~lA~~lgld~~~a~~AgLLHDIGK~~ 374 (520)
T PRK12704 317 PELIKLLGRL-KYRTSYGQ-NVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIGKAL 374 (520)
T ss_pred HHHHHHHHHh-hccCcCCC-cHhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHccCcCc
Confidence 3566777766 33444442 24578887665543 2244667788999999999984
No 23
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=60.97 E-value=17 Score=39.74 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=26.8
Q ss_pred chHHHHHHHHHHHHHh------------------cCCCCCchhhhhhhhcccc
Q 021203 122 EPQIQHLLQSAEAIRK------------------DYPDEDWLHLTALIHDLGK 156 (316)
Q Consensus 122 l~qi~H~lQTAEaiR~------------------d~p~pdW~qLtGLiHDLGK 156 (316)
.+.-+|.+.|-+.+++ .-+.+..+-|++|+||+||
T Consensus 435 ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~lAaLlHDIGK 487 (854)
T PRK01759 435 YTVDEHTLRVMLKLESFLDEESAEQHPICHQIFSQLSDRTLLYIAALFHDIAK 487 (854)
T ss_pred CcHHHHHHHHHHHHHHHhcccccccchhHHHHHHhcCCHHHHHHHHHHHhhcC
Confidence 5667898888776642 1246778899999999999
No 24
>PRK05007 PII uridylyl-transferase; Provisional
Probab=59.60 E-value=16 Score=40.25 Aligned_cols=35 Identities=26% Similarity=0.411 Sum_probs=27.0
Q ss_pred chHHHHHHHHHHHHHh------------------cCCCCCchhhhhhhhcccc
Q 021203 122 EPQIQHLLQSAEAIRK------------------DYPDEDWLHLTALIHDLGK 156 (316)
Q Consensus 122 l~qi~H~lQTAEaiR~------------------d~p~pdW~qLtGLiHDLGK 156 (316)
.+.-+|.+.+-+.+++ +-++++.+.|++|+||+||
T Consensus 460 ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~lAaLlHDIGK 512 (884)
T PRK05007 460 YTVDEHTIRVLLKLESFADEETRQRHPLCVELYPRLPKKELLLLAALFHDIAK 512 (884)
T ss_pred CcHhHHHHHHHHHHHHHhcccccccchHHHHHHHhcCChhHHHHHHHHHhhcC
Confidence 4566898888776652 1246789999999999999
No 25
>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=58.20 E-value=9.9 Score=37.52 Aligned_cols=77 Identities=23% Similarity=0.333 Sum_probs=55.3
Q ss_pred CchhHHHHHHHhcCCCCCcchhhhhhhcccccccc--CCcccccCChhhHHHHHHHHHcCCccccccCCCCCChhhhh-h
Q 021203 224 GHDDYMYLVAKENGTTLPSAGLFIVRYHSFYPLHK--EGAYAHLMNEEDKENLKWLQVFNKYDLYSKSKVLVDVEKVK-P 300 (316)
Q Consensus 224 GHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~--~gaY~hL~ne~D~~~l~wV~~Fn~yDLYSKs~~~pdve~lk-P 300 (316)
|-|| ||.-+...+-.||++-=.+++-||=.||++ ...=+||.+++-.+.|.=+..+. -.+.+.--|++. |
T Consensus 251 Gt~e-l~~Yl~KY~i~Ldp~~~~i~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYD------HqeRlTakEam~Hp 323 (338)
T KOG0668|consen 251 GTDE-LYAYLNKYQIDLDPQFEDILGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYD------HQERLTAKEAMAHP 323 (338)
T ss_pred ChHH-HHHHHHHHccCCChhHhhHhhccccccHHHhCCccccccCChHHHHHHHHHHhhc------cccccchHHHhcCc
Confidence 5555 555566678899999999999999999998 56679999998888877666543 222233344444 8
Q ss_pred chHHHHH
Q 021203 301 YYLSLIE 307 (316)
Q Consensus 301 YY~~LId 307 (316)
||....+
T Consensus 324 yF~~~~~ 330 (338)
T KOG0668|consen 324 YFAPVRE 330 (338)
T ss_pred hHHHHHH
Confidence 8877654
No 26
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=56.72 E-value=6.7 Score=42.16 Aligned_cols=94 Identities=20% Similarity=0.268 Sum_probs=60.1
Q ss_pred ccCCCcccccccccCCCCCCCCCCC--CCCcccC-CCCcc-ccccccCchhHHHHHHHhcCCCCCcchhhhhhhcccccc
Q 021203 181 AFDESNVHHKYFKENPDSNNPAYNT--KNGIYTE-GCGLD-NVMISWGHDDYMYLVAKENGTTLPSAGLFIVRYHSFYPL 256 (316)
Q Consensus 181 ~f~~~iv~~~~F~~NPD~~~p~YnT--k~GiY~p-~CGLd-nV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpw 256 (316)
+-...+||.+||+---|-.-..|.| +.||+-. |-||= .|.|. .+.|=+=-++- - -.-|.|||||-|++
T Consensus 474 k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg~alT-QrPelfgA~v~----e--vPllDMlRYh~l~a- 545 (648)
T COG1505 474 KENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALT-QRPELFGAAVC----E--VPLLDMLRYHLLTA- 545 (648)
T ss_pred hhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEEeeec-cChhhhCceee----c--cchhhhhhhccccc-
Confidence 4467889999998887877777766 5777743 34432 22221 33442222211 1 13589999999985
Q ss_pred ccCCc--ccccCChhhHHHHHHHHHcCCccc
Q 021203 257 HKEGA--YAHLMNEEDKENLKWLQVFNKYDL 285 (316)
Q Consensus 257 H~~ga--Y~hL~ne~D~~~l~wV~~Fn~yDL 285 (316)
|+ =.+-=|++|.+.++|+.++.||-=
T Consensus 546 ---G~sW~~EYG~Pd~P~d~~~l~~YSPy~n 573 (648)
T COG1505 546 ---GSSWIAEYGNPDDPEDRAFLLAYSPYHN 573 (648)
T ss_pred ---chhhHhhcCCCCCHHHHHHHHhcCchhc
Confidence 22 133457888888999999999853
No 27
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=55.82 E-value=7 Score=39.20 Aligned_cols=36 Identities=31% Similarity=0.186 Sum_probs=27.4
Q ss_pred chHHHHHHHHHHHHHhcCCCCCchhhhhhhhcccchh
Q 021203 122 EPQIQHLLQSAEAIRKDYPDEDWLHLTALIHDLGKVL 158 (316)
Q Consensus 122 l~qi~H~lQTAEaiR~d~p~pdW~qLtGLiHDLGKvl 158 (316)
.+..+|.+.+-+.+.+-- ...-+-++.|+||+||-.
T Consensus 226 ~dv~~Htl~~l~~~~~l~-~~l~lr~AaLlHDlGK~~ 261 (409)
T PRK10885 226 IDTGIHTLMVLDQAAKLS-PSLDVRFAALCHDLGKGL 261 (409)
T ss_pred CcHHHHHHHHHHHHHhcC-CCHHHHHHHHhccccCCC
Confidence 356789888887776643 344688999999999965
No 28
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.
Probab=54.78 E-value=10 Score=35.30 Aligned_cols=15 Identities=47% Similarity=0.813 Sum_probs=12.1
Q ss_pred hhhhhhhhcccchhc
Q 021203 145 LHLTALIHDLGKVLT 159 (316)
Q Consensus 145 ~qLtGLiHDLGKvl~ 159 (316)
+-..||+|||||++.
T Consensus 108 ~~~aaLlHDlgK~~~ 122 (218)
T TIGR03760 108 VFYAALLHDLGKLAV 122 (218)
T ss_pred HHHHHHHHhhhhhhH
Confidence 345899999999974
No 29
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=54.51 E-value=11 Score=32.10 Aligned_cols=47 Identities=30% Similarity=0.290 Sum_probs=27.9
Q ss_pred HHHHhhhCCCCCCCCchHHHHHHHHHHHHHhcCCCCCchhhhhhhhcc
Q 021203 107 ELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALIHDL 154 (316)
Q Consensus 107 e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGLiHDL 154 (316)
++.-+.....-.+...|-|.|++++|+.+..-+-++ =...+||+||.
T Consensus 3 ~~A~~~h~~~~~~~g~py~~H~~~va~~l~~~~~d~-~~i~aalLHD~ 49 (153)
T PF13328_consen 3 AFAAEAHAGQRRKSGEPYISHPLEVAEILAELGLDE-ETIAAALLHDV 49 (153)
T ss_dssp HHHHHHTTT-B-ST--BTTHHHHHHHHHHHTS---H-HHHHHHHHTTH
T ss_pred HHHHHHHhcccCCCCCcHHHHHHHHHHHHHHcCCCH-HHHhhheeecH
Confidence 333333333334556899999999999996654222 25679999984
No 30
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=53.87 E-value=30 Score=29.25 Aligned_cols=55 Identities=27% Similarity=0.405 Sum_probs=43.9
Q ss_pred hhhhchHHHHHHHHHHHcc--CCCccccHHHHHHHHHh------hhCCCCCCCCchHHHHHHHHHHH
Q 021203 76 QHINQTYDFVKKMREEYAK--LDKAEMSIWECCELLNE------VVDESDPDLDEPQIQHLLQSAEA 134 (316)
Q Consensus 76 ~H~~QTvdfv~~~~~~~~~--~~~~~MsI~EA~e~Ln~------lvDeSDPD~dl~qi~H~lQTAEa 134 (316)
..+.|+.++|.+..++|+- .|+.+-+|-||-..|.. ||++. + -|.+.|+++.|+.
T Consensus 16 ~~~~~g~~~v~~i~~~~gI~diN~IKPGIgEaTRvLLRRvP~~vLVr~~--~--~pd~~Hl~~LA~e 78 (100)
T PF15608_consen 16 APTWQGWAEVERIAERYGISDINLIKPGIGEATRVLLRRVPWKVLVRDP--D--DPDLAHLLLLAEE 78 (100)
T ss_pred chhHHHHHHHHHHHHHhCCCCcccccCChhHHHHHHHhcCCCEEEECCC--C--CccHHHHHHHHHH
Confidence 3467889999999999974 66889999999999984 45532 2 2778999999985
No 31
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=53.74 E-value=28 Score=37.68 Aligned_cols=37 Identities=30% Similarity=0.323 Sum_probs=27.7
Q ss_pred chHHHHHHHHHHHHHh---cCCCCCchhhhhhhhcccchh
Q 021203 122 EPQIQHLLQSAEAIRK---DYPDEDWLHLTALIHDLGKVL 158 (316)
Q Consensus 122 l~qi~H~lQTAEaiR~---d~p~pdW~qLtGLiHDLGKvl 158 (316)
.+.-+|.++|.+.+.+ ....|+=+-|++|+||+||-.
T Consensus 379 ytVDeHTL~~l~~~~~~~~~~~~~~lL~LAALlHDIGKg~ 418 (693)
T PRK00227 379 HTIDEHSLNTVANCALETVTVARPDLLLLGALYHDIGKGY 418 (693)
T ss_pred CcHHHHHHHHHHHHHHhhhccCccHHHHHHHHHHhhcCCC
Confidence 4566799999876643 234567788999999999954
No 32
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=52.13 E-value=23 Score=39.05 Aligned_cols=36 Identities=31% Similarity=0.414 Sum_probs=27.1
Q ss_pred chHHHHHHHHHHHHHhc------------------CCCCCchhhhhhhhcccch
Q 021203 122 EPQIQHLLQSAEAIRKD------------------YPDEDWLHLTALIHDLGKV 157 (316)
Q Consensus 122 l~qi~H~lQTAEaiR~d------------------~p~pdW~qLtGLiHDLGKv 157 (316)
.+.-+|.+.|-+.+++- -.+++.+-|++|+||+||-
T Consensus 459 ytVdeHtl~~v~~l~~l~~~~~~~~~p~~~~l~~~l~~~~lL~lAaLlHDIGKg 512 (895)
T PRK00275 459 YTVDAHTLNLIKNLRKLRYPEVSEKFPLASKLMGRLPKPELLYIAGLYHDIGKG 512 (895)
T ss_pred CcHHHHHHHHHHHHHHhhcccccccCchHHHHHHhcCCHHHHHHHHHHHhhhcC
Confidence 45667999887777541 1246789999999999993
No 33
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=51.72 E-value=10 Score=37.18 Aligned_cols=33 Identities=42% Similarity=0.716 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCC--CCCchhhhhhhhcccchhcc
Q 021203 128 LLQSAEAIRKDYP--DEDWLHLTALIHDLGKVLTL 160 (316)
Q Consensus 128 ~lQTAEaiR~d~p--~pdW~qLtGLiHDLGKvl~~ 160 (316)
++++|.++-..|| +.|=+-..+|+||+||+.-+
T Consensus 167 v~~~~~~l~~~y~~~n~dll~agalLHDiGKi~E~ 201 (314)
T PRK13480 167 MLRLAKSICDLYPSLNKDLLYAGIILHDLGKVIEL 201 (314)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHhhhHHHh
Confidence 3344444545566 33556668899999999955
No 34
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=50.30 E-value=70 Score=32.43 Aligned_cols=37 Identities=27% Similarity=0.285 Sum_probs=26.8
Q ss_pred chHHHHHHHHHHHHHhcC-CCCC-chhhhhhhhcccchh
Q 021203 122 EPQIQHLLQSAEAIRKDY-PDED-WLHLTALIHDLGKVL 158 (316)
Q Consensus 122 l~qi~H~lQTAEaiR~d~-p~pd-W~qLtGLiHDLGKvl 158 (316)
.+...|.+++-+.+.+-- ..++ .+.|++|+||+||-.
T Consensus 257 ~~v~~Htl~vl~~~~~l~~~~~~~~l~lAaLLHDiGK~~ 295 (466)
T TIGR02692 257 KDVYEHSLTVLRQAIDLEDDGPDLVLRWAALLHDIGKPA 295 (466)
T ss_pred CcHHHHHHHHHHHHHhccccccCHHHHHHHHHhhccCCC
Confidence 467789998877764321 1234 689999999999965
No 35
>PRK03059 PII uridylyl-transferase; Provisional
Probab=47.53 E-value=33 Score=37.67 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=26.3
Q ss_pred chHHHHHHHHHHHHHh------------------cCCCCCchhhhhhhhcccc
Q 021203 122 EPQIQHLLQSAEAIRK------------------DYPDEDWLHLTALIHDLGK 156 (316)
Q Consensus 122 l~qi~H~lQTAEaiR~------------------d~p~pdW~qLtGLiHDLGK 156 (316)
.+.-+|.+.|-+.+++ .-.+++.+.|++|+||+||
T Consensus 439 ytVd~Htl~~v~~l~~~~~~~~~~~~p~~~~~~~~~~~~~lL~LAaLlHDIGK 491 (856)
T PRK03059 439 YTVDQHILMVLRNLRRFAMAEHAHEYPFCSQLIANFDRPWLLYVAALFHDIAK 491 (856)
T ss_pred CcHhHHHHHHHHHHHHhhccccccccchHHHHHHhcCChhHHHHHHHHHhhcc
Confidence 4566798888777653 1123678999999999999
No 36
>PRK05092 PII uridylyl-transferase; Provisional
Probab=46.76 E-value=12 Score=41.05 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHhc------------------CCCCCchhhhhhhhcccc
Q 021203 123 PQIQHLLQSAEAIRKD------------------YPDEDWLHLTALIHDLGK 156 (316)
Q Consensus 123 ~qi~H~lQTAEaiR~d------------------~p~pdW~qLtGLiHDLGK 156 (316)
+.-+|.++|-+.+++- -+.++.+-|++|+||+||
T Consensus 493 tVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~lAaLlHDIGK 544 (931)
T PRK05092 493 TVDEHTIRAIGVLAEIERGELADEHPLASELMPKIESRRALYVAVLLHDIAK 544 (931)
T ss_pred cHhHHHHHHHHHHHHHhcccccccchhHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence 3346888887766531 245678999999999999
No 37
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=45.00 E-value=28 Score=32.31 Aligned_cols=39 Identities=31% Similarity=0.425 Sum_probs=26.9
Q ss_pred chHHHHHHHHH---HHHHhc-CCCCCchhhhhhhhcccchhcc
Q 021203 122 EPQIQHLLQSA---EAIRKD-YPDEDWLHLTALIHDLGKVLTL 160 (316)
Q Consensus 122 l~qi~H~lQTA---EaiR~d-~p~pdW~qLtGLiHDLGKvl~~ 160 (316)
...+.|.+.+| ..|-+. +-|++=....||+||+||....
T Consensus 35 ~~~l~H~~~Va~lA~~Ia~~~g~D~~l~~~aaLLHDIg~~~~~ 77 (222)
T COG1418 35 QHVLEHSLRVAYLAYRIAEEEGVDPDLALRAALLHDIGKAIDH 77 (222)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcccccc
Confidence 34566666654 444433 4566777789999999999854
No 38
>COG1639 Predicted signal transduction protein [Signal transduction mechanisms]
Probab=43.48 E-value=33 Score=33.75 Aligned_cols=132 Identities=19% Similarity=0.234 Sum_probs=76.7
Q ss_pred HHHHHccCCCccccHHHHHHHHH-----hhhC-------CCCCCCCchHH----HHHHHHHHHHH----hcC-CCCCchh
Q 021203 88 MREEYAKLDKAEMSIWECCELLN-----EVVD-------ESDPDLDEPQI----QHLLQSAEAIR----KDY-PDEDWLH 146 (316)
Q Consensus 88 ~~~~~~~~~~~~MsI~EA~e~Ln-----~lvD-------eSDPD~dl~qi----~H~lQTAEaiR----~d~-p~pdW~q 146 (316)
+-.-|..+.+.--||-||+..|= +||= -+.|+..--+. ++++.||-.++ .-+ ++.+=.-
T Consensus 65 ANS~yfg~~~~i~tl~~Ai~rLG~~~v~NLv~a~a~~~~~~~~~~~~~~~~~~w~~a~~~A~ia~~La~~~g~~~~~~~y 144 (289)
T COG1639 65 ANSPYFGFPREITTLNEAIVRLGIGLVINLVLALAEQAIQSVNSSSAEDRQLFWDTAIETAMIAEGLARALGRADSDEAY 144 (289)
T ss_pred hcchhcCCCCccCcHHHHHHHHhHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHH
Confidence 33457778888889999887542 2221 12233222222 55555655443 333 5677888
Q ss_pred hhhhhhcccchhcccCCCCCCCceEeccceeeccccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCch
Q 021203 147 LTALIHDLGKVLTLPKFGGLPQWAVVGDTFPLGCAFDESNVHHKYFKENPDSNNPAYNTKNGIYTEGCGLDNVMISWGHD 226 (316)
Q Consensus 147 LtGLiHDLGKvl~~~~fg~~pQW~VVGDTfPvGC~f~~~iv~~~~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHD 226 (316)
++||+|.+|+|+++..| |+|.-+++-. -..|+|..... -+..|+ .+|-
T Consensus 145 ~~gLLh~lG~l~ll~~~---~~~~~~~~~~---------------~~~~~~~~~~~-~e~~~i-------------~~h~ 192 (289)
T COG1639 145 TAGLLHNLGILVLLTDF---PDHCELLDYL---------------LALNNDELLAL-DEELGI-------------FGHA 192 (289)
T ss_pred HHHHHHHccHHHHHHHh---HHHHHHHHHH---------------HHhccCcccch-HHHhcc-------------ccch
Confidence 89999999999988333 4564333221 13343332221 121222 2477
Q ss_pred hHHHHHHHhcCCCCCcchhhhhhhccc
Q 021203 227 DYMYLVAKENGTTLPSAGLFIVRYHSF 253 (316)
Q Consensus 227 EYlY~Vlk~n~stLP~eaL~mIRyHSF 253 (316)
+--+.+++.- .+|++-...||+|-=
T Consensus 193 ~Iga~llr~W--~fp~~l~e~i~~~~~ 217 (289)
T COG1639 193 SIGAYLLRRW--NFPDDLIEAIRFHHN 217 (289)
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHhhc
Confidence 7778888764 788888888888754
No 39
>COG3481 Predicted HD-superfamily hydrolase [General function prediction only]
Probab=42.21 E-value=28 Score=34.17 Aligned_cols=90 Identities=23% Similarity=0.368 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCCCC--CchhhhhhhhcccchhcccCCCCCCCceEeccceeeccccCCCcccccccccCCCCCCCCCC
Q 021203 127 HLLQSAEAIRKDYPDE--DWLHLTALIHDLGKVLTLPKFGGLPQWAVVGDTFPLGCAFDESNVHHKYFKENPDSNNPAYN 204 (316)
Q Consensus 127 H~lQTAEaiR~d~p~p--dW~qLtGLiHDLGKvl~~~~fg~~pQW~VVGDTfPvGC~f~~~iv~~~~F~~NPD~~~p~Yn 204 (316)
=+++.|.++-+-+|-- |=++..+++||+||++-+-... ...|.|=|+-.
T Consensus 148 ~~~~l~~~~~~~y~~~n~dli~Ag~ilHdigK~~el~~~~-~~~yt~~g~li---------------------------- 198 (287)
T COG3481 148 TVLELYKRISEIYPTVNRELIYAGAILHDIGKVLELTGPE-ATEYTVRGNLI---------------------------- 198 (287)
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHhcccccccCCCcc-cccceecccee----------------------------
Confidence 3566666766656533 6788899999999999652211 34676666554
Q ss_pred CCCCcccCCCCccccccccCchhHHHHHHHhcCCCCCcchhhhhhhccccccccCCccc
Q 021203 205 TKNGIYTEGCGLDNVMISWGHDDYMYLVAKENGTTLPSAGLFIVRYHSFYPLHKEGAYA 263 (316)
Q Consensus 205 Tk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~ 263 (316)
.|- |-++|+ .=++++.. -++.+.+-++| |+-+.-|-...|-
T Consensus 199 -------gHi-------a~~~d~-i~~~a~El--~~~~~~v~~l~-h~Ilshhg~~e~g 239 (287)
T COG3481 199 -------GHI-------ALIVDE-ITKAAREL--GIDDEEVLALR-HEILSHHGKLEYG 239 (287)
T ss_pred -------EEE-------EeehhH-HHHHHHHh--CCCchhhhHhh-HhhhhhccCcccc
Confidence 221 336777 66666654 44456776776 6666666655553
No 40
>PF06784 UPF0240: Uncharacterised protein family (UPF0240); InterPro: IPR009622 This is a group of proteins of unknown function.
Probab=40.99 E-value=22 Score=32.33 Aligned_cols=34 Identities=32% Similarity=0.554 Sum_probs=28.2
Q ss_pred CCCccccHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHHHHhcC
Q 021203 95 LDKAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDY 139 (316)
Q Consensus 95 ~~~~~MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~ 139 (316)
..++++||.||+++|+..- .||.+ .|||+|-++|
T Consensus 113 vPkGkltl~qal~lL~~Hq--~~P~~---------WtaekIA~eY 146 (179)
T PF06784_consen 113 VPKGKLTLRQALELLNNHQ--LDPET---------WTAEKIAQEY 146 (179)
T ss_pred CCCCceeHHHHHHHHHHhc--cCccc---------cCHHHHHHHh
Confidence 5689999999999999765 45665 4699999998
No 41
>KOG4481 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.40 E-value=26 Score=32.71 Aligned_cols=34 Identities=29% Similarity=0.490 Sum_probs=28.2
Q ss_pred CCCccccHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHHHHhcC
Q 021203 95 LDKAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDY 139 (316)
Q Consensus 95 ~~~~~MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~ 139 (316)
..+++.||-||+++||. -.-+|.+ ||||-|-..+
T Consensus 112 Ipkgkit~~eAL~~ln~--hkL~pet---------w~AekIA~ey 145 (194)
T KOG4481|consen 112 IPKGKITIVEALTFLNN--HKLLPET---------WTAEKIAQEY 145 (194)
T ss_pred CCCCceeHHHHHHHHhh--hhcChhh---------hHHHHHHHHH
Confidence 45789999999999998 5556776 8999998887
No 42
>PRK04374 PII uridylyl-transferase; Provisional
Probab=39.95 E-value=25 Score=38.75 Aligned_cols=35 Identities=29% Similarity=0.265 Sum_probs=26.0
Q ss_pred chHHHHHHHHHHHHHhc------------------CCCCCchhhhhhhhcccc
Q 021203 122 EPQIQHLLQSAEAIRKD------------------YPDEDWLHLTALIHDLGK 156 (316)
Q Consensus 122 l~qi~H~lQTAEaiR~d------------------~p~pdW~qLtGLiHDLGK 156 (316)
.+.-+|.+.+-+.+++- -..|+.+-|++|+||+||
T Consensus 448 ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~lL~lAaLlHDIGK 500 (869)
T PRK04374 448 YTVDQHTLMVLRNIALFAAGRADERFSIAHEVWPRLRKPELLLLAGLFHDIAK 500 (869)
T ss_pred CcHHHHHHHHHHHHHHHhccccccccccHHHHHhccCCccHHHHHHHHHhccC
Confidence 46667888876666521 134789999999999999
No 43
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=36.79 E-value=63 Score=24.75 Aligned_cols=43 Identities=28% Similarity=0.495 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCccccccCCCCCCh-hhhh--hchHHHHHHHcCCCCC
Q 021203 271 KENLKWLQVFNKYDLYSKSKVLVDV-EKVK--PYYLSLIEKYFPAKLR 315 (316)
Q Consensus 271 ~~~l~wV~~Fn~yDLYSKs~~~pdv-e~lk--PYY~~LIdKY~P~~L~ 315 (316)
.++++||+....-. ++.....|+ +.++ =-+-.||+++.|+.+.
T Consensus 2 ~~ll~Win~~l~~~--~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~ 47 (108)
T PF00307_consen 2 KELLKWINSHLEKY--GKGRRVTNFSEDLRDGVVLCKLINKLFPGTID 47 (108)
T ss_dssp HHHHHHHHHHHTTS--TTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSS
T ss_pred HHHHHHHHHHcccc--cCCCCcCcHHHHhcCHHHHHHHHHHHhhccch
Confidence 57899999887532 233344455 5555 4678999999998764
No 44
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=35.67 E-value=39 Score=31.37 Aligned_cols=49 Identities=29% Similarity=0.404 Sum_probs=33.3
Q ss_pred HHHHHHHHhhhCCCCCCCCchHHHHHHHHHHHHHhc---C-CCCCchhhhhhhhcccchh
Q 021203 103 WECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKD---Y-PDEDWLHLTALIHDLGKVL 158 (316)
Q Consensus 103 ~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d---~-p~pdW~qLtGLiHDLGKvl 158 (316)
-++...+..++. ..-++|.+..||+.++- + -++.=--++|+.||++|-+
T Consensus 4 ~~l~~~~~~~l~-------~kR~~H~l~V~~~A~~LA~~y~~d~~kA~~AgilHD~aK~~ 56 (187)
T COG1713 4 EELLAIVKELLS-------EKRFEHCLGVAETAIELAEAYGLDPEKAYLAGILHDIAKEL 56 (187)
T ss_pred HHHHHHHHHhcC-------HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhC
Confidence 344445555444 36889999888777643 1 2344478899999999987
No 45
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=34.96 E-value=34 Score=31.98 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=23.3
Q ss_pred chHHHHHHHHHHHHHh-c----CCCCCchhhhhhhhcccch
Q 021203 122 EPQIQHLLQSAEAIRK-D----YPDEDWLHLTALIHDLGKV 157 (316)
Q Consensus 122 l~qi~H~lQTAEaiR~-d----~p~pdW~qLtGLiHDLGKv 157 (316)
+.-+...+.+|.+|-+ . .-++.=+-+++|+||+|+.
T Consensus 57 ~~Hs~RV~~~a~~ia~~e~~~~~~D~evl~lAALLHDIG~~ 97 (228)
T TIGR03401 57 YNHSLRVYYYGLAIARDQFPEWDLSDETWFLTCLLHDIGTT 97 (228)
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhccc
Confidence 4444555556666643 2 2355667789999999975
No 46
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=34.64 E-value=22 Score=38.58 Aligned_cols=34 Identities=32% Similarity=0.443 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHhcC------------------CCCCchhhhhhhhcccc
Q 021203 123 PQIQHLLQSAEAIRKDY------------------PDEDWLHLTALIHDLGK 156 (316)
Q Consensus 123 ~qi~H~lQTAEaiR~d~------------------p~pdW~qLtGLiHDLGK 156 (316)
+.-+|.+.+.+.+.+-. ++++.+-|++|+||+||
T Consensus 428 tVd~Htl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~lAaLlHDiGK 479 (850)
T TIGR01693 428 TVDEHTLRTVVHLAPFARGRLAREHPLASELMPKIEDPELLYLAALLHDIGK 479 (850)
T ss_pred chhHHHHHHHHHHHHHhccccccccccHHHHHhccCCHHHHHHHHHHHHHhc
Confidence 44468888877775421 13567899999999999
No 47
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=32.14 E-value=1.2e+02 Score=26.20 Aligned_cols=52 Identities=23% Similarity=0.380 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcc--CC--CccccHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHHHHhcCCC
Q 021203 83 DFVKKMREEYAK--LD--KAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPD 141 (316)
Q Consensus 83 dfv~~~~~~~~~--~~--~~~MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p~ 141 (316)
.|+..+++-|.+ ++ ...||..||++.|.- +|+.+..+|.-++. +.+++-|||
T Consensus 41 ~~~~~~~~~~~~~~~~~f~~~Ms~~eAy~ILGv-----~~~As~~eIkkaYR--rLa~~~HPD 96 (116)
T PTZ00100 41 GFNPSLGSLFLKNDLKGFENPMSKSEAYKILNI-----SPTASKERIREAHK--QLMLRNHPD 96 (116)
T ss_pred hhhHHHHHHHhccccccccCCCCHHHHHHHcCC-----CCCCCHHHHHHHHH--HHHHHhCCC
Confidence 456777777744 43 458999999999983 34555666665544 344555554
No 48
>PRK08071 L-aspartate oxidase; Provisional
Probab=31.49 E-value=50 Score=33.64 Aligned_cols=72 Identities=25% Similarity=0.440 Sum_probs=46.6
Q ss_pred HHHHHHHHccCCCccccHHHHHHHHHhhh-CCC--CCC---CCchHHHHHHHHHHHH---------------HhcCCCCC
Q 021203 85 VKKMREEYAKLDKAEMSIWECCELLNEVV-DES--DPD---LDEPQIQHLLQSAEAI---------------RKDYPDED 143 (316)
Q Consensus 85 v~~~~~~~~~~~~~~MsI~EA~e~Ln~lv-DeS--DPD---~dl~qi~H~lQTAEai---------------R~d~p~pd 143 (316)
.++...+|...-|.+-.+.+|+..|+.|- .+. +.+ .+...+..++.+|++| |.|||...
T Consensus 415 l~~~m~~~~gi~R~~~~L~~a~~~l~~l~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~ 494 (510)
T PRK08071 415 IQEKMMKYVGIVRTEQSLSEAKRWLEKYGVRNMILDHDALTNEEIELSHMLTVAKLIVVSALQRTESRGGHYRSDYPHRN 494 (510)
T ss_pred HHHHHHhhccEEEcHHHHHHHHHHHHHHHHhhhhccccccchhHHHHHhHHHHHHHHHHHHHhCCCCccceecCCCCccc
Confidence 45566777777788888999999999984 111 111 1223557888899886 55678667
Q ss_pred chhhhhhhhcccch
Q 021203 144 WLHLTALIHDLGKV 157 (316)
Q Consensus 144 W~qLtGLiHDLGKv 157 (316)
|...+ ++-.-||+
T Consensus 495 ~~~~~-~~~~~~~~ 507 (510)
T PRK08071 495 WRGKE-IVRTKRKL 507 (510)
T ss_pred cCceE-EEecCCce
Confidence 75444 44444444
No 49
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=30.61 E-value=70 Score=31.71 Aligned_cols=62 Identities=27% Similarity=0.378 Sum_probs=46.9
Q ss_pred ccccHHHHHHHHHhhhCCCCCCCCchHHHH------------HHHHHHHHHhcCCCCCchhhhhhhhcccchhcccCCCC
Q 021203 98 AEMSIWECCELLNEVVDESDPDLDEPQIQH------------LLQSAEAIRKDYPDEDWLHLTALIHDLGKVLTLPKFGG 165 (316)
Q Consensus 98 ~~MsI~EA~e~Ln~lvDeSDPD~dl~qi~H------------~lQTAEaiR~d~p~pdW~qLtGLiHDLGKvl~~~~fg~ 165 (316)
.+-.+|+|+-.=-+|+.+|.=|.|++++-- |=-||||.|++ | |-=|+.|-+|| ++
T Consensus 178 IEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d-~--~L~q~~g~v~d----------SG 244 (300)
T COG1023 178 IEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKD-P--DLDQISGRVSD----------SG 244 (300)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhC-C--CHHHhcCeecc----------CC
Confidence 366788888777778888999999998743 23589999998 3 66788888777 44
Q ss_pred CCCceEe
Q 021203 166 LPQWAVV 172 (316)
Q Consensus 166 ~pQW~VV 172 (316)
++.|+|-
T Consensus 245 EGrWTv~ 251 (300)
T COG1023 245 EGRWTVE 251 (300)
T ss_pred CceeehH
Confidence 7788753
No 50
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=30.37 E-value=51 Score=35.49 Aligned_cols=33 Identities=33% Similarity=0.262 Sum_probs=26.0
Q ss_pred CCchHHHHHHHHHHHHHhcCCCCCc-hhhhhhhhcc
Q 021203 120 LDEPQIQHLLQSAEAIRKDYPDEDW-LHLTALIHDL 154 (316)
Q Consensus 120 ~dl~qi~H~lQTAEaiR~d~p~pdW-~qLtGLiHDL 154 (316)
...|-|.|.+++|+.+..-+. |. ...+||+||.
T Consensus 16 sg~PYi~Hpl~VA~iL~~~~~--D~~~i~AaLLHDv 49 (683)
T TIGR00691 16 SGEPYIIHPLAVALILAELGM--DEETVCAALLHDV 49 (683)
T ss_pred CCCcHHHHHHHHHHHHHHhCC--CHHHHHHHhccch
Confidence 456889999999999997653 44 4558999996
No 51
>PF12477 TraW_N: Sex factor F TraW protein N terminal
Probab=30.13 E-value=19 Score=24.55 Aligned_cols=12 Identities=42% Similarity=0.930 Sum_probs=9.0
Q ss_pred CceEeccceeec
Q 021203 168 QWAVVGDTFPLG 179 (316)
Q Consensus 168 QW~VVGDTfPvG 179 (316)
.=-|+|+|||+|
T Consensus 20 dLG~~G~~fpIa 31 (31)
T PF12477_consen 20 DLGVIGPTFPIA 31 (31)
T ss_pred hccccccccccC
Confidence 334779999986
No 52
>PF07514 TraI_2: Putative helicase; InterPro: IPR011119 The members of this family are restricted to the proteobacteria. Some members have been annotated as helicase, conjugative relaxase or nickase. The majority contain an HD domain, which is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria.
Probab=29.36 E-value=21 Score=34.93 Aligned_cols=36 Identities=44% Similarity=0.722 Sum_probs=23.5
Q ss_pred HHHHHHHHHH-HHHhcC----C-----------CCCchh---hhhhhhcccchhc
Q 021203 124 QIQHLLQSAE-AIRKDY----P-----------DEDWLH---LTALIHDLGKVLT 159 (316)
Q Consensus 124 qi~H~lQTAE-aiR~d~----p-----------~pdW~q---LtGLiHDLGKvl~ 159 (316)
-+.|.|++|. |+|-.. | .+.|-- ++||.|||||++.
T Consensus 67 ll~h~LEva~~Alrl~~~~~lp~~a~pEe~~~q~~~W~~avf~AALlhdlgk~l~ 121 (327)
T PF07514_consen 67 LLDHTLEVAAYALRLRQGYMLPPGATPEEQAAQEPAWRYAVFYAALLHDLGKPLT 121 (327)
T ss_pred HHHHHHHHHHHHHHHhcCeecCCCCChhhHHHHHhhhHHHHHHHHHHhccCccee
Confidence 4677777763 444211 1 357754 5899999999774
No 53
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=28.20 E-value=1e+02 Score=29.74 Aligned_cols=97 Identities=22% Similarity=0.318 Sum_probs=59.1
Q ss_pred CCccccHHHHHHHHHhhhCCCCCCCCchH-HHHHHHHHHHHHhcCCCCCchhhhhhhhcccchhcccCCCC--------C
Q 021203 96 DKAEMSIWECCELLNEVVDESDPDLDEPQ-IQHLLQSAEAIRKDYPDEDWLHLTALIHDLGKVLTLPKFGG--------L 166 (316)
Q Consensus 96 ~~~~MsI~EA~e~Ln~lvDeSDPD~dl~q-i~H~lQTAEaiR~d~p~pdW~qLtGLiHDLGKvl~~~~fg~--------~ 166 (316)
|....|-.+..+.|..+... |+...+ +.=..-||+.|++.+|- +|++.+ |+ .
T Consensus 48 Nn~~~s~~~~~~~L~~~~~~---~~~~~~i~TS~~at~~~l~~~~~~-------------~kv~vi---G~~~l~~~l~~ 108 (269)
T COG0647 48 NNSTRSREVVAARLSSLGGV---DVTPDDIVTSGDATADYLAKQKPG-------------KKVYVI---GEEGLKEELEG 108 (269)
T ss_pred CCCCCCHHHHHHHHHhhcCC---CCCHHHeecHHHHHHHHHHhhCCC-------------CEEEEE---CCcchHHHHHh
Confidence 45566666677777773322 222222 34556678888887642 566654 32 2
Q ss_pred CCceEecccee-----eccccCCCccccc-------------ccccCCCCCCCCCCCCCCcccCCCC
Q 021203 167 PQWAVVGDTFP-----LGCAFDESNVHHK-------------YFKENPDSNNPAYNTKNGIYTEGCG 215 (316)
Q Consensus 167 pQW~VVGDTfP-----vGC~f~~~iv~~~-------------~F~~NPD~~~p~YnTk~GiY~p~CG 215 (316)
-.|.++++.=| |.+.+++...|.. |+..|||..=| |+.| +.|+||
T Consensus 109 ~G~~~~~~~~~~~~d~Vv~g~d~~~~~e~l~~a~~~i~~g~~fI~tNpD~~~p---~~~g-~~pgaG 171 (269)
T COG0647 109 AGFELVDEEEPARVDAVVVGLDRTLTYEKLAEALLAIAAGAPFIATNPDLTVP---TERG-LRPGAG 171 (269)
T ss_pred CCcEEeccCCCCcccEEEEecCCCCCHHHHHHHHHHHHcCCcEEEeCCCcccc---CCCC-CccCcH
Confidence 24556665545 6667777776644 67789998755 5777 778887
No 54
>PRK10119 putative hydrolase; Provisional
Probab=27.74 E-value=1.1e+02 Score=28.98 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=35.6
Q ss_pred HHhhhCCCCCCCCchHHHHHHHHHHHHHhc-CCCCCchhhhhhhhcccc
Q 021203 109 LNEVVDESDPDLDEPQIQHLLQSAEAIRKD-YPDEDWLHLTALIHDLGK 156 (316)
Q Consensus 109 Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d-~p~pdW~qLtGLiHDLGK 156 (316)
..+.....||.=|+.-|....++|..|-+. +.+..-+.|.+++||+|-
T Consensus 14 v~~~l~~~~~~HD~~Hi~RV~~lA~~Ia~~e~~D~~vv~lAAlLHDv~d 62 (231)
T PRK10119 14 LKNHHQHQDAAHDICHFRRVWATAQKLAADDDVDMLVVLTACYFHDIVS 62 (231)
T ss_pred HHHHhhcCCCccChHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcch
Confidence 333344457888888888888889888543 346778889999999963
No 55
>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.
Probab=27.09 E-value=23 Score=37.86 Aligned_cols=14 Identities=50% Similarity=0.954 Sum_probs=12.3
Q ss_pred hhhhhhhcccchhc
Q 021203 146 HLTALIHDLGKVLT 159 (316)
Q Consensus 146 qLtGLiHDLGKvl~ 159 (316)
.+.||+||+||+.-
T Consensus 2 ~~~aLLHDIGK~~~ 15 (648)
T TIGR02578 2 AVAALLHDIGKVIR 15 (648)
T ss_pred chhhhhhccchhhh
Confidence 47899999999994
No 56
>PF04986 Y2_Tnp: Putative transposase; InterPro: IPR007069 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases IS1294 and IS801 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=26.58 E-value=24 Score=31.44 Aligned_cols=33 Identities=18% Similarity=0.543 Sum_probs=30.2
Q ss_pred cccccCchhHHHHHHHhcCCCCCcchhhhhhhccccc
Q 021203 219 VMISWGHDDYMYLVAKENGTTLPSAGLFIVRYHSFYP 255 (316)
Q Consensus 219 V~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYp 255 (316)
..|...-+|+|-+++.+ +|+.+.-||||+=||.
T Consensus 145 ~~~~l~~~efi~r~l~H----vp~~~f~~iR~yG~~s 177 (183)
T PF04986_consen 145 KTLTLSAEEFIRRLLQH----VPPKGFKRIRYYGFYS 177 (183)
T ss_pred EEEEechHHHHHHHHhh----cCCCCceEEEEEEEEc
Confidence 66777899999999987 9999999999999987
No 57
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=26.08 E-value=1.1e+02 Score=24.53 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=34.7
Q ss_pred CccccHHHHHHHHHhhhCCC-CCCCCchHHHHHHHHHHHHHh
Q 021203 97 KAEMSIWECCELLNEVVDES-DPDLDEPQIQHLLQSAEAIRK 137 (316)
Q Consensus 97 ~~~MsI~EA~e~Ln~lvDeS-DPD~dl~qi~H~lQTAEaiR~ 137 (316)
+.++|.-+|++.|.++|..- ++|++|.+..-+++.+-++-+
T Consensus 3 ~~~~sfEeal~~Le~IV~~LE~gdl~Leesl~lyeeG~~L~k 44 (76)
T PRK14068 3 KETQSFEEMMQELEQIVQKLDNETVSLEESLDLYQRGMKLSA 44 (76)
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 35789999999999999886 799999999888888766554
No 58
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=25.88 E-value=1.1e+02 Score=31.27 Aligned_cols=53 Identities=28% Similarity=0.362 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhhCCCCCCCCchHHHHHHHHH---HHHHhcCC----CCCchhhhhhhhcccchh
Q 021203 102 IWECCELLNEVVDESDPDLDEPQIQHLLQSA---EAIRKDYP----DEDWLHLTALIHDLGKVL 158 (316)
Q Consensus 102 I~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTA---EaiR~d~p----~pdW~qLtGLiHDLGKvl 158 (316)
..+.++-|..++..-|+.|. .|+..+| +++-...+ .-|=+++.|.+||+|||-
T Consensus 168 ~~~t~~~L~~~~E~R~~etg----~H~~Rv~~~~~~lAe~lgLse~~v~~i~~AapLHDIGKva 227 (360)
T COG3437 168 LDETLEELAALLEVRDYETG----DHLERVAQYSELLAELLGLSEEEVDLIKKAAPLHDIGKVA 227 (360)
T ss_pred HHHHHHHHHHHHHhcccchh----hHHHHHHHHHHHHHHHhCCCHHHHHHHHhccchhhccccc
Confidence 34788888888866676662 3443333 33322221 126678899999999997
No 59
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=25.29 E-value=36 Score=32.97 Aligned_cols=79 Identities=19% Similarity=0.310 Sum_probs=56.2
Q ss_pred HHHHHHHHhcC--CCCCchhhhhhhhcccchhc--ccCCCCCCCceEeccceeeccccCCC-cccccccccCC-CCCCCC
Q 021203 129 LQSAEAIRKDY--PDEDWLHLTALIHDLGKVLT--LPKFGGLPQWAVVGDTFPLGCAFDES-NVHHKYFKENP-DSNNPA 202 (316)
Q Consensus 129 lQTAEaiR~d~--p~pdW~qLtGLiHDLGKvl~--~~~fg~~pQW~VVGDTfPvGC~f~~~-iv~~~~F~~NP-D~~~p~ 202 (316)
|.+||.+++++ ..+-|-+.+-..--+-.+.. +...+..+-|-|-| .|.++-. -+|.+.|+.|- --++|.
T Consensus 187 ~EeAE~~Kr~~k~~~Eif~~v~PV~eKMAeIv~~hie~~~i~dl~lvGG-----ac~~~g~e~~Fe~~l~l~v~~P~~p~ 261 (277)
T COG4820 187 LEEAEQYKRGHKKGEEIFPVVKPVYEKMAEIVARHIEGQGITDLWLVGG-----ACMQPGVEELFEKQLALQVHLPQHPL 261 (277)
T ss_pred HhHHHHhhhccccchhcccchhHHHHHHHHHHHHHhccCCCcceEEecc-----cccCccHHHHHHHHhccccccCCCcc
Confidence 78999999987 45578888777666666652 34455566777666 4777643 45777788776 457899
Q ss_pred CCCCCCcccC
Q 021203 203 YNTKNGIYTE 212 (316)
Q Consensus 203 YnTk~GiY~p 212 (316)
|-|+.||-..
T Consensus 262 y~TPLgIA~s 271 (277)
T COG4820 262 YMTPLGIASS 271 (277)
T ss_pred eechhhhhhc
Confidence 9999999643
No 60
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=24.20 E-value=77 Score=32.54 Aligned_cols=35 Identities=17% Similarity=0.107 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHhcCCCCCchhhhhhhhcccchh
Q 021203 123 PQIQHLLQSAEAIRKDYPDEDWLHLTALIHDLGKVL 158 (316)
Q Consensus 123 ~qi~H~lQTAEaiR~d~p~pdW~qLtGLiHDLGKvl 158 (316)
....|.+.+-..+.+.- ..-++-+++|+||+||-.
T Consensus 228 d~~~htl~~l~~~~~~~-~~l~lR~AaLlHDiGK~~ 262 (417)
T PRK13298 228 NLGNYILMGLSKISKLT-KDIDIRFSYLCQFLGSMI 262 (417)
T ss_pred hHHHHHHHHHHHHHhcC-CCHHHHHHHHHhhhcCCC
Confidence 45577776666665532 344678899999999976
No 61
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=24.10 E-value=1.1e+02 Score=33.42 Aligned_cols=51 Identities=20% Similarity=0.282 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHHHHhcCCCCCch-hhhhhhhcc
Q 021203 102 IWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWL-HLTALIHDL 154 (316)
Q Consensus 102 I~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~-qLtGLiHDL 154 (316)
+..|+++..+.....-.....|-|.|.+++|+.+..-+ -|+= ..+||+||.
T Consensus 23 l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~--~D~~ti~AaLLHDv 74 (702)
T PRK11092 23 LRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMR--LDYETLMAALLHDV 74 (702)
T ss_pred HHHHHHHHHHhccCCcCCCCCcHHHHHHHHHHHHHHcC--CCHHHHHHhcccch
Confidence 45566666544433322344677899999999998653 3554 458999997
No 62
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.08 E-value=1.3e+02 Score=23.90 Aligned_cols=42 Identities=12% Similarity=0.082 Sum_probs=35.1
Q ss_pred CccccHHHHHHHHHhhhCCC-CCCCCchHHHHHHHHHHHHHhc
Q 021203 97 KAEMSIWECCELLNEVVDES-DPDLDEPQIQHLLQSAEAIRKD 138 (316)
Q Consensus 97 ~~~MsI~EA~e~Ln~lvDeS-DPD~dl~qi~H~lQTAEaiR~d 138 (316)
+.++|.-+|+..|.++|..- ++++.|.+..-+++.+-++-+.
T Consensus 3 ~k~~sfEe~l~~LE~IV~~LE~~~l~Leesl~~ye~G~~L~k~ 45 (75)
T PRK14064 3 TKKKTFEEAIAELETIVEALENGSASLEDSLDMYQKGIELTKL 45 (75)
T ss_pred CCcCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 35689999999999999887 6899999998888887766554
No 63
>PF04572 Gb3_synth: Alpha 1,4-glycosyltransferase conserved region; InterPro: IPR007652 The glycosphingolipids (GSL) form part of eukaryotic cell membranes. They consist of a hydrophilic carbohydrate moiety linked to a hydrophobic ceramide tail embedded within the lipid bilayer of the membrane. Lactosylceramide, Gal1,4Glc1Cer (LacCer), is the common synthetic precursor to the majority of GSL found in vertebrates. Alpha 1.4-glycosyltransferases utilise UDP donors and transfer the sugar to a beta-linked acceptor []. No function has been yet assigned to this domain ; GO: 0008378 galactosyltransferase activity, 0005795 Golgi stack
Probab=22.66 E-value=77 Score=26.99 Aligned_cols=67 Identities=21% Similarity=0.368 Sum_probs=45.5
Q ss_pred hhhhhhccccccccCCcccccCChhhHHHHHHHHHcCCcc--ccccCC-CCCChhhhhhchHHHHHHHcCCC
Q 021203 245 LFIVRYHSFYPLHKEGAYAHLMNEEDKENLKWLQVFNKYD--LYSKSK-VLVDVEKVKPYYLSLIEKYFPAK 313 (316)
Q Consensus 245 L~mIRyHSFYpwH~~gaY~hL~ne~D~~~l~wV~~Fn~yD--LYSKs~-~~pdve~lkPYY~~LIdKY~P~~ 313 (316)
+.++..-+|||-|....-+.+-...+.+.++|++ |.|- |+.|.. ..+=...-..-|..|+.+|||-.
T Consensus 58 ~~vlp~~~FYPI~~~~~~~~F~~~~~~~~~~~~~--~Sy~vHlWN~~s~~~~i~~~S~~~y~~La~~~CP~~ 127 (135)
T PF04572_consen 58 FSVLPPEAFYPIPYQDWKRFFEPPSTEEVMEWLK--NSYAVHLWNKMSSGLPIEPGSNTLYAKLARQHCPRT 127 (135)
T ss_pred eEEcCccceeccChhHhHHHhcCCcchHHHHHhh--CceEEEecccccCCccccCCcHHHHHHHHHHhChHH
Confidence 5556666788888887777777777788888887 6654 455433 22212234457999999999953
No 64
>KOG2155 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.39 E-value=46 Score=35.36 Aligned_cols=18 Identities=39% Similarity=0.610 Sum_probs=15.9
Q ss_pred HHHHHhcCCCCCchhhhh
Q 021203 132 AEAIRKDYPDEDWLHLTA 149 (316)
Q Consensus 132 AEaiR~d~p~pdW~qLtG 149 (316)
|+-+|++++.++|+|+|=
T Consensus 373 A~~a~r~~g~~~Wlq~Ty 390 (631)
T KOG2155|consen 373 AACAMRDPGKNDWLQLTY 390 (631)
T ss_pred HHHHhhcCCCCccccccc
Confidence 888999999999999873
No 65
>TIGR01346 isocit_lyase isocitrate lyase. Isocitrate lyase and malate synthase are the enzymes of the glyoxylate shunt, a pathway associated with the TCA cycle.
Probab=21.36 E-value=79 Score=33.65 Aligned_cols=40 Identities=23% Similarity=0.621 Sum_probs=32.1
Q ss_pred CCCchHHHHHHHHHHHHHhcCCCC----------Cc------hhhhhhhhcccchh
Q 021203 119 DLDEPQIQHLLQSAEAIRKDYPDE----------DW------LHLTALIHDLGKVL 158 (316)
Q Consensus 119 D~dl~qi~H~lQTAEaiR~d~p~p----------dW------~qLtGLiHDLGKvl 158 (316)
.|+.|.+..+-+.||+||+.+|+. .| =++--|+-||||+=
T Consensus 386 ET~~Pdl~~A~~Fa~~v~~~~P~k~LaYN~SPSFNW~~~~~d~~~~~F~~~L~~lG 441 (527)
T TIGR01346 386 ETSTPDLELAKKFAEGVKSKFPDQLLAYNLSPSFNWSAHMEDDEIAKFIQELGDLG 441 (527)
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCCeEEecCCCCccccccCCHHHHHHHHHHHHhcC
Confidence 456788999999999999999854 34 36788999999943
No 66
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=21.34 E-value=33 Score=29.85 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=15.9
Q ss_pred ccccHHHHHHHHHhhhCC-CCCCCCchHHHHHHHH
Q 021203 98 AEMSIWECCELLNEVVDE-SDPDLDEPQIQHLLQS 131 (316)
Q Consensus 98 ~~MsI~EA~e~Ln~lvDe-SDPD~dl~qi~H~lQT 131 (316)
..||+.||+..|| |++ .+++.=.-+.+|||..
T Consensus 53 ~~Mtl~EA~~ILn--v~~~~~~eeI~k~y~~Lf~~ 85 (127)
T PF03656_consen 53 KGMTLDEARQILN--VKEELSREEIQKRYKHLFKA 85 (127)
T ss_dssp ----HHHHHHHHT----G--SHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHcC--CCCccCHHHHHHHHHHHHhc
Confidence 4799999999999 555 2222222334677654
Done!