Query 021203
Match_columns 316
No_of_seqs 147 out of 211
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 14:15:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021203.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021203hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2huo_A Inositol oxygenase; pro 100.0 4E-146 1E-150 1020.1 18.6 269 44-316 16-289 (289)
2 2ibn_A Inositol oxygenase; red 100.0 1E-135 4E-140 936.4 15.8 247 67-316 3-250 (250)
3 2o08_A BH1327 protein; putativ 94.1 0.035 1.2E-06 47.1 3.7 52 100-158 2-57 (188)
4 3ccg_A HD superfamily hydrolas 94.1 0.03 1E-06 47.6 3.2 52 100-158 3-58 (190)
5 2ogi_A Hypothetical protein SA 93.9 0.038 1.3E-06 47.4 3.5 52 100-158 10-65 (196)
6 3hc1_A Uncharacterized HDOD do 90.8 0.31 1.1E-05 44.1 5.6 133 92-259 72-224 (305)
7 3i7a_A Putative metal-dependen 88.0 0.6 2E-05 41.7 5.2 119 92-253 69-215 (281)
8 3ljx_A MMOQ response regulator 86.9 0.44 1.5E-05 43.0 3.6 125 92-252 61-206 (288)
9 3b57_A LIN1889 protein; Q92AN1 85.8 0.63 2.2E-05 40.1 3.9 55 104-158 9-64 (209)
10 2qgs_A Protein Se1688; alpha-h 85.2 0.78 2.7E-05 40.2 4.3 52 102-156 7-63 (225)
11 3dto_A BH2835 protein; all alp 85.1 0.86 2.9E-05 40.5 4.6 57 102-158 7-64 (223)
12 3djb_A Hydrolase, HD family; a 84.9 0.71 2.4E-05 41.0 3.9 56 102-157 7-63 (223)
13 3m1t_A Putative phosphohydrola 83.0 0.78 2.7E-05 41.0 3.3 123 94-252 62-203 (275)
14 2pjq_A Uncharacterized protein 82.8 0.9 3.1E-05 40.0 3.6 57 100-156 10-67 (231)
15 2pq7_A Predicted HD superfamil 77.6 2.6 8.9E-05 36.2 4.7 53 102-157 15-71 (220)
16 3sk9_A Putative uncharacterize 77.3 1.3 4.4E-05 40.6 2.8 47 115-164 18-84 (265)
17 3tm8_A BD1817, uncharacterized 76.0 1.6 5.5E-05 40.3 3.1 43 224-269 231-273 (328)
18 1vqr_A Hypothetical protein CJ 76.0 1.2 4.2E-05 39.8 2.3 132 92-257 76-229 (297)
19 3kq5_A Hypothetical cytosolic 69.3 1.9 6.4E-05 42.4 2.0 38 122-159 74-120 (393)
20 3mem_A Putative signal transdu 59.6 2.8 9.4E-05 40.5 1.1 129 92-253 230-383 (457)
21 3m5f_A Metal dependent phospho 51.7 9.8 0.00034 35.1 3.3 16 143-158 57-72 (244)
22 4dmb_A HD domain-containing pr 51.5 6.4 0.00022 35.0 2.0 37 122-158 44-83 (204)
23 2hek_A Hypothetical protein; p 47.2 13 0.00043 35.5 3.4 38 122-159 49-91 (371)
24 1ynb_A Hypothetical protein AF 46.8 10 0.00035 32.9 2.5 36 122-158 37-80 (173)
25 3nqw_A CG11900; stringent resp 46.1 34 0.0012 29.3 5.7 53 102-154 9-64 (179)
26 3gw7_A Uncharacterized protein 43.4 13 0.00045 33.3 2.8 41 117-157 22-63 (239)
27 2paq_A 5'-deoxynucleotidase YF 43.3 14 0.00047 32.2 2.8 37 122-158 30-76 (201)
28 3nr1_A HD domain-containing pr 42.0 38 0.0013 29.0 5.4 53 102-154 7-62 (178)
29 1vj7_A Bifunctional RELA/SPOT; 31.7 37 0.0013 32.9 4.0 52 102-154 28-79 (393)
30 2dqb_A Deoxyguanosinetriphosph 31.7 21 0.00071 34.4 2.2 18 141-158 97-114 (376)
31 2l3i_A Aoxki4A, antimicrobial 31.5 34 0.0012 22.2 2.5 25 221-253 6-30 (30)
32 3aql_A Poly(A) polymerase; tra 31.2 21 0.00072 34.4 2.2 36 123-158 266-303 (415)
33 1chu_A Protein (L-aspartate ox 29.0 47 0.0016 32.2 4.3 51 85-135 443-500 (540)
34 2gz4_A Hypothetical protein AT 28.5 42 0.0014 29.9 3.5 60 99-158 28-91 (207)
35 2q14_A Phosphohydrolase; BT420 28.0 15 0.00053 35.7 0.6 15 144-158 88-102 (410)
36 2cqz_A 177AA long hypothetical 27.1 28 0.00095 29.4 2.0 37 122-158 31-76 (177)
37 2ksn_A Ubiquitin domain-contai 26.3 79 0.0027 27.1 4.6 47 81-138 34-83 (137)
38 1xx7_A Oxetanocin-like protein 24.8 57 0.0019 28.1 3.6 37 122-158 36-81 (184)
39 3mzo_A LIN2634 protein; HD-dom 23.0 1.5E+02 0.0053 26.1 6.1 37 122-158 29-74 (216)
40 3u1n_A SAM domain and HD domai 21.4 57 0.002 33.1 3.3 13 145-157 101-113 (528)
No 1
>2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold, oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP: a.211.1.4 PDB: 3bxd_A*
Probab=100.00 E-value=4e-146 Score=1020.06 Aligned_cols=269 Identities=46% Similarity=0.914 Sum_probs=252.5
Q ss_pred CCCCCcc----cCccccCCccchhhhhHHHHHHHHHhhhhchHHHHHHHHHHHccCCCccccHHHHHHHHHhhhCCCCCC
Q 021203 44 FVAPEIN----SFGKTFRDYNAECERQKSVEEFYRLQHINQTYDFVKKMREEYAKLDKAEMSIWECCELLNEVVDESDPD 119 (316)
Q Consensus 44 f~~p~~~----~~~~~fR~Y~~~~~r~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~lvDeSDPD 119 (316)
|..|+.+ +++++||||+. +.+++||++|||+||++|||+||++||++|++++|++|||||||++||+||||||||
T Consensus 16 ~~~p~~~~~~~k~~~~FR~Y~~-~~~~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MtIweA~e~Ln~LvDeSDPD 94 (289)
T 2huo_A 16 VYRPDVDPEMAKSKDSFRNYTS-GPLLDRVFTTYKLMHTHQTVDFVSRKRIQYGSFSYKKMTIMEAVGMLDDLVDESDPD 94 (289)
T ss_dssp ----------------CCCSSS-CSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTTCCSCEECHHHHHHHGGGCCCSSCTT
T ss_pred eeccCccccccccHHHhhCccc-chhHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhcCCcCCc
Confidence 5556655 77889999997 567899999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHhcCCCCCchhhhhhhhcccchhcccCCCCCCCceEeccceeeccccCCCccccc-ccccCCCC
Q 021203 120 LDEPQIQHLLQSAEAIRKDYPDEDWLHLTALIHDLGKVLTLPKFGGLPQWAVVGDTFPLGCAFDESNVHHK-YFKENPDS 198 (316)
Q Consensus 120 ~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGLiHDLGKvl~~~~fg~~pQW~VVGDTfPvGC~f~~~iv~~~-~F~~NPD~ 198 (316)
+|+|||+||||||||||+|||..||||||||||||||||++ | ++|||+||||||||||+|+++|||++ ||++|||.
T Consensus 95 ~dl~qi~H~lQTAEaiR~d~pp~dW~qLtGLiHDLGKvl~~--~-~epQW~vvGDTfpVGC~f~~~iv~~e~~F~~NpD~ 171 (289)
T 2huo_A 95 VDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKIMAL--W-GEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDL 171 (289)
T ss_dssp CCSCHHHHHHHHHHHHHHHCTTCHHHHHHHHHTTGGGGGGG--G-TCCGGGTSSCCCBSSSCCCTTSTTTTTSCTTCGGG
T ss_pred cchhHHHHHHHHHHHHHHhCCCcchheeeeecccchhhhhh--c-CCCceeeecCcceeccccccccccchhhccCCCCC
Confidence 99999999999999999999877999999999999999987 4 69999999999999999999999999 99999999
Q ss_pred CCCCCCCCCCcccCCCCccccccccCchhHHHHHHHhcCCCCCcchhhhhhhccccccccCCcccccCChhhHHHHHHHH
Q 021203 199 NNPAYNTKNGIYTEGCGLDNVMISWGHDDYMYLVAKENGTTLPSAGLFIVRYHSFYPLHKEGAYAHLMNEEDKENLKWLQ 278 (316)
Q Consensus 199 ~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~hL~ne~D~~~l~wV~ 278 (316)
+||+||||||||+||||||||+||||||||||+|||+|+||||+|||+|||||||||||++|||+||||++|.+||+||+
T Consensus 172 ~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~~L~ne~D~~~l~wv~ 251 (289)
T 2huo_A 172 QDPRYSTELGMYQPHCGLENVLMSWGHDEYLYQMMKFNKFSLPSEAFYMIRFHSFYPWHTGGDYRQLCSQQDLDMLPWVQ 251 (289)
T ss_dssp GSTTTSSSSTTCCTTCCGGGSCBCSSHHHHHHHHHHHTTCCCCHHHHHHHHHTTCHHHHTSSCCTTTCCHHHHHHHHHHH
T ss_pred CCccccccCCcccCCCCccceeecccchHHHHHHHHcCCCCCCHHHHHHHHHhccCcccccccHhhhcChhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCccccccCCCCCChhhhhhchHHHHHHHcCCCCCC
Q 021203 279 VFNKYDLYSKSKVLVDVEKVKPYYLSLIEKYFPAKLRW 316 (316)
Q Consensus 279 ~Fn~yDLYSKs~~~pdve~lkPYY~~LIdKY~P~~L~W 316 (316)
+||||||||||+++||||+|||||++|||||||++|+|
T Consensus 252 ~Fn~yDLYSKs~~~pdve~lkpYY~~LidKY~P~~l~W 289 (289)
T 2huo_A 252 EFNKFDLYTKCPDLPDVESLRPYYQGLIDKYCPGTLSW 289 (289)
T ss_dssp HHHHHHHHTCCSSCCCHHHHHHHHHHHHHHHSCSCEEC
T ss_pred HhCcccccccCCCCCCHHHHHHHHHHHHHHHCCcccCC
Confidence 99999999999999999999999999999999999999
No 2
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=100.00 E-value=1.2e-135 Score=936.36 Aligned_cols=247 Identities=49% Similarity=0.941 Sum_probs=234.4
Q ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHccCCCccccHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHHHHhcCCCCCchh
Q 021203 67 KSVEEFYRLQHINQTYDFVKKMREEYAKLDKAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWLH 146 (316)
Q Consensus 67 ~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~q 146 (316)
+||++|||+||++|||+||++||++|++++|++|||||||++||+||||||||++++||+|||||||+||+|||+.||||
T Consensus 3 ~~V~~~Yr~~h~~QTv~fv~~~~~~~~~~~~~~mti~ea~~~Ln~lvDeSDPD~~v~ql~HaLQTAe~ar~dg~d~dw~~ 82 (250)
T 2ibn_A 3 DRVFTTYKLMHTHQTVDFVRSKHAQFGGFSYKKMTVMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFH 82 (250)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTTCCSCEECHHHHHHHGGGCCCTTC---CCCHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhcCCcCCCCcccHHHHHHHHHHHHHHhCcChhHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999998779999
Q ss_pred hhhhhhcccchhcccCCCCCCCceEeccceeeccccCCCccccc-ccccCCCCCCCCCCCCCCcccCCCCccccccccCc
Q 021203 147 LTALIHDLGKVLTLPKFGGLPQWAVVGDTFPLGCAFDESNVHHK-YFKENPDSNNPAYNTKNGIYTEGCGLDNVMISWGH 225 (316)
Q Consensus 147 LtGLiHDLGKvl~~~~fg~~pQW~VVGDTfPvGC~f~~~iv~~~-~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGH 225 (316)
||||||||||+|++ + ++|||+||||||||||+|+++|||++ +|++|||.+||+||||||||+||||||||+|||||
T Consensus 83 laaLlHDLGkll~~--~-~~~qW~vvgdtfpvGc~f~~~iv~~e~~f~~NpD~~~~~Ynt~~GiY~~~CGLdnv~msWgh 159 (250)
T 2ibn_A 83 LVGLLHDLGKVLAL--F-GEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLDRVLMSWGH 159 (250)
T ss_dssp HHHHHTTGGGHHHH--T-TCCGGGTSSCCCBSSSCCCTTSTTHHHHCTTCGGGGCTTTSSSSTTCCTTCCGGGSCBCCSH
T ss_pred HHHHHhccHhhhcc--c-CCcchhhccCcccccCccchhhcchhhcccCCCCCCCccccccCCcccCCCCccceeecccc
Confidence 99999999999987 4 58999999999999999999999999 99999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCCcchhhhhhhccccccccCCcccccCChhhHHHHHHHHHcCCccccccCCCCCChhhhhhchHHH
Q 021203 226 DDYMYLVAKENGTTLPSAGLFIVRYHSFYPLHKEGAYAHLMNEEDKENLKWLQVFNKYDLYSKSKVLVDVEKVKPYYLSL 305 (316)
Q Consensus 226 DEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~hL~ne~D~~~l~wV~~Fn~yDLYSKs~~~pdve~lkPYY~~L 305 (316)
|||||+|||+|+||||+|||+|||||||||||++|||+||||++|.+||+||++||||||||||+++||||+|||||++|
T Consensus 160 DEYlY~Vlk~n~stLP~eaL~mIRyhSfypwH~~~~Y~~l~n~~D~~~l~~v~~Fn~yDLYsK~~~~pdve~l~pYY~~L 239 (250)
T 2ibn_A 160 DEYMYQVMKFNKFSLPPEAFYMIRFHSFYPWHTGRDYQQLCSQQDLAMLPWVREFNKFDLYTKCPDLPDVDKLRPYYQGL 239 (250)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHTTCHHHHTTCCCTTTCCHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHhccCchhcccchhhhcCHhHHHHHHHHHHhCCccccccCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCC
Q 021203 306 IEKYFPAKLRW 316 (316)
Q Consensus 306 IdKY~P~~L~W 316 (316)
||||||++|+|
T Consensus 240 idky~P~~l~W 250 (250)
T 2ibn_A 240 IDKYCPGILSW 250 (250)
T ss_dssp HHHHSCSCEEC
T ss_pred HHHHCCcccCC
Confidence 99999999999
No 3
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=94.13 E-value=0.035 Score=47.11 Aligned_cols=52 Identities=23% Similarity=0.249 Sum_probs=40.2
Q ss_pred ccHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHHHHh----cCCCCCchhhhhhhhcccchh
Q 021203 100 MSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRK----DYPDEDWLHLTALIHDLGKVL 158 (316)
Q Consensus 100 MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~----d~p~pdW~qLtGLiHDLGKvl 158 (316)
|++.++.+.|.+.+++ ....|.+.+|...+. -+-+++=.-+.||+||+||+.
T Consensus 2 ~~~~~~~~~l~~~l~~-------~~~~Hs~~Va~~A~~lA~~~g~~~~~~~~agLLHDIGk~~ 57 (188)
T 2o08_A 2 MNRGKALQLVKPHLTE-------HRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAKFR 57 (188)
T ss_dssp CCHHHHHHHHGGGCCH-------HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTS
T ss_pred CCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 7888999999887653 577899988876653 233456678899999999985
No 4
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=94.07 E-value=0.03 Score=47.57 Aligned_cols=52 Identities=21% Similarity=0.248 Sum_probs=40.8
Q ss_pred ccHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHHHHh----cCCCCCchhhhhhhhcccchh
Q 021203 100 MSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRK----DYPDEDWLHLTALIHDLGKVL 158 (316)
Q Consensus 100 MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~----d~p~pdW~qLtGLiHDLGKvl 158 (316)
|++.++.+.|.+.+++ ....|.+.+|...+. -+-+++-..+.||+||+||+.
T Consensus 3 ~~~~~~~~~l~~~~~~-------~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDiGk~~ 58 (190)
T 3ccg_A 3 WSYDKITDYLMNNLGE-------KRYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAKKL 58 (190)
T ss_dssp CCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTS
T ss_pred CCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC
Confidence 7888999999988753 567899988876653 233566788999999999975
No 5
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=93.89 E-value=0.038 Score=47.38 Aligned_cols=52 Identities=23% Similarity=0.265 Sum_probs=40.7
Q ss_pred ccHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHHHHh----cCCCCCchhhhhhhhcccchh
Q 021203 100 MSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRK----DYPDEDWLHLTALIHDLGKVL 158 (316)
Q Consensus 100 MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~----d~p~pdW~qLtGLiHDLGKvl 158 (316)
|++-++.+.|.+.+++ .-..|.+.+|...+. -+-+++-..+.||+||+||+.
T Consensus 10 ~~~~~~~~~l~~~l~~-------~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDIGK~~ 65 (196)
T 2ogi_A 10 LDRTELLSKVRHMMSD-------KRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKEL 65 (196)
T ss_dssp SCHHHHHHHHHTTSCH-------HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTC
T ss_pred ccHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHcCCcC
Confidence 8899999999987653 567899988876653 233556788999999999985
No 6
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=90.80 E-value=0.31 Score=44.12 Aligned_cols=133 Identities=17% Similarity=0.112 Sum_probs=78.0
Q ss_pred HccCCCccccHHHHHHHHH--------------hhhCCCCCCCCc-hHHHHHHHHHHHHHhc----C-CCCCchhhhhhh
Q 021203 92 YAKLDKAEMSIWECCELLN--------------EVVDESDPDLDE-PQIQHLLQSAEAIRKD----Y-PDEDWLHLTALI 151 (316)
Q Consensus 92 ~~~~~~~~MsI~EA~e~Ln--------------~lvDeSDPD~dl-~qi~H~lQTAEaiR~d----~-p~pdW~qLtGLi 151 (316)
+..+.+.--||.+|+-+|- ..........+. .-..|.+.+|..++.- + ++++-+-++||+
T Consensus 72 ~~~~~~~I~si~~Av~~LG~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~hs~~va~~a~~la~~~~~~~~~~~~~agll 151 (305)
T 3hc1_A 72 LYSAARPISSIRDAVIYLGLDLLREAIFTCAIVDLFKTGKGPLNRSTLWAHSLGVARIAKLIAERTGFLNPVNVYVAGLL 151 (305)
T ss_dssp HHHTTSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSCHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHT
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3345667788888877653 112222233332 3459999988877632 2 356778899999
Q ss_pred hcccchhcccCCCCCCCceEeccceeeccccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhHHHH
Q 021203 152 HDLGKVLTLPKFGGLPQWAVVGDTFPLGCAFDESNVHHKYFKENPDSNNPAYNTKNGIYTEGCGLDNVMISWGHDDYMYL 231 (316)
Q Consensus 152 HDLGKvl~~~~fg~~pQW~VVGDTfPvGC~f~~~iv~~~~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~ 231 (316)
||+||+.+...+. |.|. .+. +.-...|. + . .-.+.-.|-..|.+.=+.
T Consensus 152 HDIGkl~l~~~~p---------~~~~-------~il--~~~~~~~~---~-------l----~~~E~~~~~~~H~~iG~~ 199 (305)
T 3hc1_A 152 HDVGEVFINFFRG---------KEFS-------QVV--TLVDEEKI---T-------F----GQAEERLFGTSHCEVGFA 199 (305)
T ss_dssp TTHHHHHHHHHSH---------HHHH-------HHH--HHHHHHCC---C-------H----HHHHHHHHSSCHHHHHHH
T ss_pred HHhhHHHHHHHHH---------HHHH-------HHH--HHHHhcCC---C-------H----HHHHHHHHCCCHHHHHHH
Confidence 9999998541111 1110 000 00000000 0 0 012334555679999999
Q ss_pred HHHhcCCCCCcchhhhhhhccccccccC
Q 021203 232 VAKENGTTLPSAGLFIVRYHSFYPLHKE 259 (316)
Q Consensus 232 Vlk~n~stLP~eaL~mIRyHSFYpwH~~ 259 (316)
+++. ..+|++...+||+|-- ||...
T Consensus 200 ll~~--w~lp~~i~~~I~~HHe-~~~~~ 224 (305)
T 3hc1_A 200 LAKR--WSLNEFICDTILYHHD-IEAVP 224 (305)
T ss_dssp HHHH--TTCCHHHHHHHHHTTC-GGGCS
T ss_pred HHHH--cCCCHHHHHHHHHhCC-hhhcc
Confidence 9997 5799999999999854 55443
No 7
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}
Probab=88.00 E-value=0.6 Score=41.68 Aligned_cols=119 Identities=13% Similarity=0.087 Sum_probs=72.3
Q ss_pred HccCCCccccHHHHHHHHH--------------hhhCCCCCCCC--c-hHHHHHHHHHHHHHh-----------cCCCCC
Q 021203 92 YAKLDKAEMSIWECCELLN--------------EVVDESDPDLD--E-PQIQHLLQSAEAIRK-----------DYPDED 143 (316)
Q Consensus 92 ~~~~~~~~MsI~EA~e~Ln--------------~lvDeSDPD~d--l-~qi~H~lQTAEaiR~-----------d~p~pd 143 (316)
+..+.+.--||.+|+-.|- .+.+...|-.. . .-..|.+.+|..++. ...+++
T Consensus 69 ~~~~~~~i~si~~Av~~LG~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~hs~~vA~~a~~la~~~~~~~~~~~~~~~ 148 (281)
T 3i7a_A 69 LYSRGVPAENINSAVTRIGLTQIKSIATSVAMEQLFISTNEMVWEVMDEVWRTSIDVTAAACSLLQIYNKKHPGSGLNYD 148 (281)
T ss_dssp TTCSSSCCCSHHHHHHHHCTTTHHHHHHHHTTGGGSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCHH
T ss_pred HhCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCHH
Confidence 4456677789999987653 22333222211 1 245898888755442 234567
Q ss_pred chhhhhhhhcccchhcccCCCCCCCceEeccceeeccccCCCcccccccccCCCCCCCCCCCCCCcccCCCCcccccccc
Q 021203 144 WLHLTALIHDLGKVLTLPKFGGLPQWAVVGDTFPLGCAFDESNVHHKYFKENPDSNNPAYNTKNGIYTEGCGLDNVMISW 223 (316)
Q Consensus 144 W~qLtGLiHDLGKvl~~~~fg~~pQW~VVGDTfPvGC~f~~~iv~~~~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSW 223 (316)
-.-++||+||+||+...... +.+| +.+. ++. -++ -.+..
T Consensus 149 ~~~laGLLHdiGkl~l~~~~----------~~~~------------~~l~------~~~------------~~~-~~~~~ 187 (281)
T 3i7a_A 149 TLTLAGLVHNIGALPVLTEA----------EAHP------------EMFT------TIE------------HLR-SLVRK 187 (281)
T ss_dssp HHHHHHHHTTTTHHHHHHHH----------HHCG------------GGCC------CHH------------HHH-HHHHH
T ss_pred HHHHHHHHHHCCHHHHHHhH----------HhhH------------HHhc------ChH------------HHH-HHHhC
Confidence 78899999999999754110 0111 1111 000 011 22345
Q ss_pred CchhHHHHHHHhcCCCCCcchhhhhhhccc
Q 021203 224 GHDDYMYLVAKENGTTLPSAGLFIVRYHSF 253 (316)
Q Consensus 224 GHDEYlY~Vlk~n~stLP~eaL~mIRyHSF 253 (316)
.|.+.=+.+++. -.+|++...+||+|-=
T Consensus 188 ~H~~iGa~ll~~--w~lp~~i~~ai~~Hh~ 215 (281)
T 3i7a_A 188 MQGPIGRAVLKS--WDFAPEVMEVVERWAD 215 (281)
T ss_dssp HHHHHHHHHHHH--TTCCHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHH--CCCCHHHHHHHHHHcC
Confidence 699999999987 4799999999999864
No 8
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A
Probab=86.87 E-value=0.44 Score=42.95 Aligned_cols=125 Identities=13% Similarity=0.197 Sum_probs=74.1
Q ss_pred HccCCCccccHHHHHHHHH-----hh---------hCCCC-CCCCch-HHHHHHHHHHHHHhcC-----CCCCchhhhhh
Q 021203 92 YAKLDKAEMSIWECCELLN-----EV---------VDESD-PDLDEP-QIQHLLQSAEAIRKDY-----PDEDWLHLTAL 150 (316)
Q Consensus 92 ~~~~~~~~MsI~EA~e~Ln-----~l---------vDeSD-PD~dl~-qi~H~lQTAEaiR~d~-----p~pdW~qLtGL 150 (316)
+.++.+.--||.+|+-+|= ++ ++... ...+.. -..|.+++|..+|.-. ++++-.-++||
T Consensus 61 ~~~~~~~I~si~~Av~~LG~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~hs~~~A~~a~~la~~~~~~~~~~~~~agL 140 (288)
T 3ljx_A 61 AQGTRRPVASVIDAIDLVGLPAVRQFALSLSLIDAHREGRCEAFDYAAYWQKSLARAVALQSITAQASTVAPKEAFTLGL 140 (288)
T ss_dssp C--CCSCCCSHHHHHHHHCHHHHHHHHHGGGC----CTTSCTTSCHHHHHHHHHHHHHHHHHHHHTSSSSCHHHHHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 3345667789999987653 11 12111 112333 3589999998776421 25677889999
Q ss_pred hhcccchhcccCCCCCCCceEeccceeeccccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhHHH
Q 021203 151 IHDLGKVLTLPKFGGLPQWAVVGDTFPLGCAFDESNVHHKYFKENPDSNNPAYNTKNGIYTEGCGLDNVMISWGHDDYMY 230 (316)
Q Consensus 151 iHDLGKvl~~~~fg~~pQW~VVGDTfPvGC~f~~~iv~~~~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY 230 (316)
+||+||+++...+.. ++. +.+.. +.. + +. .-.++-.+...|.+.=+
T Consensus 141 LhdiGkl~l~~~~p~--~~~-------------------~il~~-~~~-~-------~l----~~~E~~~lg~~H~~vGa 186 (288)
T 3ljx_A 141 LADVGRLALATAWPE--EYS-------------------ECLRK-ADG-E-------AL----IALERERFATDHDELTR 186 (288)
T ss_dssp HTTHHHHHHHHHCHH--HHH-------------------HHHHH-CCH-H-------HH----HHHHHHHHSSCHHHHHH
T ss_pred HHhccHHHHHHHHHH--HHH-------------------HHHHH-hhc-C-------CH----HHHHHHHHccCHHHHHH
Confidence 999999986411110 110 00000 000 0 00 11233455678999999
Q ss_pred HHHHhcCCCCCcchhhhhhhcc
Q 021203 231 LVAKENGTTLPSAGLFIVRYHS 252 (316)
Q Consensus 231 ~Vlk~n~stLP~eaL~mIRyHS 252 (316)
.+++. -.||++...+||||-
T Consensus 187 ~ll~~--W~lp~~i~~aI~~Hh 206 (288)
T 3ljx_A 187 MLLTD--WGFPQVFIDALQLSQ 206 (288)
T ss_dssp HHHHH--TTCCHHHHHHHHHTT
T ss_pred HHHHH--CCCCHHHHHHHHHHc
Confidence 99996 479999999999984
No 9
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=85.81 E-value=0.63 Score=40.12 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=31.7
Q ss_pred HHHHHHHhhhCCCCCCCCchHHHHHHHHHHHHHh-cCCCCCchhhhhhhhcccchh
Q 021203 104 ECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRK-DYPDEDWLHLTALIHDLGKVL 158 (316)
Q Consensus 104 EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~-d~p~pdW~qLtGLiHDLGKvl 158 (316)
++.+.+...+...|+.-++.-+.-.+++|..|.+ .+.+++-+.+.+|+||+||.-
T Consensus 9 ~~~~~v~~~~~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~~v~~AAlLHDig~~~ 64 (209)
T 3b57_A 9 SAKNWMHSHFENETTGHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDIK 64 (209)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTTCCC--
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCccc
Confidence 3444454555444555555555555666666665 355778899999999999853
No 10
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=85.24 E-value=0.78 Score=40.16 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhhCCCCCCCCchHHHHHHHH---HHHH-Hh-cCCCCCchhhhhhhhcccc
Q 021203 102 IWECCELLNEVVDESDPDLDEPQIQHLLQS---AEAI-RK-DYPDEDWLHLTALIHDLGK 156 (316)
Q Consensus 102 I~EA~e~Ln~lvDeSDPD~dl~qi~H~lQT---AEai-R~-d~p~pdW~qLtGLiHDLGK 156 (316)
|.++.+.+...+...++.- .+.|.+.+ |..| .+ .+.+++-+.+++|+||+||
T Consensus 7 i~~~~~~v~~~~~~~~~~H---~~~H~~rV~~~a~~i~a~~~~~d~~~l~lAAlLHDigk 63 (225)
T 2qgs_A 7 IKKAYEYMKSFHQHDTTGH---DIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVD 63 (225)
T ss_dssp HHHHHHHHHHHTTTCSSCH---HHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHhcCCCcc---CHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHcCCC
Confidence 3444455555555434443 45666554 4455 44 3457888999999999997
No 11
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=85.13 E-value=0.86 Score=40.52 Aligned_cols=57 Identities=19% Similarity=0.138 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHHHHh-cCCCCCchhhhhhhhcccchh
Q 021203 102 IWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRK-DYPDEDWLHLTALIHDLGKVL 158 (316)
Q Consensus 102 I~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~-d~p~pdW~qLtGLiHDLGKvl 158 (316)
|..+.+.+.+.....||.-++.-+.-...+|..|-+ .+-+++-+.+++|+||+||.-
T Consensus 7 i~~~~~~v~~~l~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AalLHDig~~k 64 (223)
T 3dto_A 7 LQSAEAWVKKQLMDEYSGHDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLIDDK 64 (223)
T ss_dssp HHHHHHHHHHTTTTC----CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC--
T ss_pred HHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccccc
Confidence 445555566666666676666666666777777743 345778889999999999853
No 12
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=84.93 E-value=0.71 Score=40.97 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHHHHhc-CCCCCchhhhhhhhcccch
Q 021203 102 IWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKD-YPDEDWLHLTALIHDLGKV 157 (316)
Q Consensus 102 I~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d-~p~pdW~qLtGLiHDLGKv 157 (316)
|..+.+.+.+.....||.-++.-+.-.+.+|..|-+. +.+++-+.+++|+||+||.
T Consensus 7 i~~~~~~v~~~l~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AAlLHDig~~ 63 (223)
T 3djb_A 7 IEKTITFVKHILEKDASGHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVADE 63 (223)
T ss_dssp HHHHHHHHHHHTTSSSCTTTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC-
T ss_pred HHHHHHHHHHHhhcCCCcCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 4445555666666666776666666677777777543 4577889999999999984
No 13
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0
Probab=82.99 E-value=0.78 Score=41.00 Aligned_cols=123 Identities=10% Similarity=0.074 Sum_probs=71.4
Q ss_pred cCCCccccHHHHHHHHH--------------hhhCCCCCCCCchH-HHHHHHHHHHHHh----cCCCCCchhhhhhhhcc
Q 021203 94 KLDKAEMSIWECCELLN--------------EVVDESDPDLDEPQ-IQHLLQSAEAIRK----DYPDEDWLHLTALIHDL 154 (316)
Q Consensus 94 ~~~~~~MsI~EA~e~Ln--------------~lvDeSDPD~dl~q-i~H~lQTAEaiR~----d~p~pdW~qLtGLiHDL 154 (316)
.+.+.--||.+|+-.|= ...+. .|..++.. ..|.+.+|..++. -+.+++=.-++||+||+
T Consensus 62 ~~~~~i~si~~Av~~LG~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~hs~~~a~~a~~la~~~~~~~~~~~~agLLhdi 140 (275)
T 3m1t_A 62 GCSREVGTIDDAVVRLGMQTLRTLVIASAVVGAVPK-VEGFDLADFWGNTFEVAIICQELAKRLGTLPEEAFTCGILHSI 140 (275)
T ss_dssp ----CCCSHHHHHHHHCHHHHHHHHHHHHHHHHCCC-CTTCCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCccCHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 34556678888876642 12222 23344443 4799988876653 24466778899999999
Q ss_pred cchhcccCCCCCCCceEeccceeeccccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhHHHHHHH
Q 021203 155 GKVLTLPKFGGLPQWAVVGDTFPLGCAFDESNVHHKYFKENPDSNNPAYNTKNGIYTEGCGLDNVMISWGHDDYMYLVAK 234 (316)
Q Consensus 155 GKvl~~~~fg~~pQW~VVGDTfPvGC~f~~~iv~~~~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk 234 (316)
||+++...+ |++.. .+ .+..+ +. .+ -.-.+.-.+...|.+.=+.+++
T Consensus 141 Gkl~l~~~~---p~~~~-------------~i--~~~~~--~~--~~-----------~~~~E~~~lg~~H~~vGa~ll~ 187 (275)
T 3m1t_A 141 GELLIVNGD---PAVAA-------------TI--SAAVA--DG--AD-----------RNLMEKELLGYDNAEIGALLAQ 187 (275)
T ss_dssp HHHHHHHHC---HHHHH-------------HH--HHHHH--TT--CC-----------HHHHHHHHHSSCHHHHHHHHHH
T ss_pred cHHHHHHHC---HHHHH-------------HH--HHHHh--CC--CC-----------HHHHHHHHHCCCHHHHHHHHHH
Confidence 999964111 11100 00 00000 00 00 0012334455679999999999
Q ss_pred hcCCCCCcchhhhhhhcc
Q 021203 235 ENGTTLPSAGLFIVRYHS 252 (316)
Q Consensus 235 ~n~stLP~eaL~mIRyHS 252 (316)
. -.||++....||||-
T Consensus 188 ~--W~lp~~i~~aI~~Hh 203 (275)
T 3m1t_A 188 S--WKFTPHLVKGIQFQN 203 (275)
T ss_dssp H--TTCCHHHHHHHHTTT
T ss_pred H--CCCCHHHHHHHHHhC
Confidence 6 479999999999985
No 14
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=82.77 E-value=0.9 Score=39.99 Aligned_cols=57 Identities=11% Similarity=0.087 Sum_probs=39.3
Q ss_pred ccHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHHHHh-cCCCCCchhhhhhhhcccc
Q 021203 100 MSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRK-DYPDEDWLHLTALIHDLGK 156 (316)
Q Consensus 100 MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~-d~p~pdW~qLtGLiHDLGK 156 (316)
+-|.++.+.+...+...++.-++.-+.-.+++|..|.+ .+.+++-+.+.+|+||+||
T Consensus 10 ~~i~~~~~~v~~~~~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~ll~lAAlLHDigk 67 (231)
T 2pjq_A 10 TQLTAIQTYALQKLAHDHSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVID 67 (231)
T ss_dssp HHHHHHHHHHHTSSTTCCSSCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCc
Confidence 34556666666666655556655555556666777665 3457788999999999998
No 15
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=77.58 E-value=2.6 Score=36.19 Aligned_cols=53 Identities=25% Similarity=0.240 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhhCCCCCCCCchHHHHHHHHHH---HHHh-cCCCCCchhhhhhhhcccch
Q 021203 102 IWECCELLNEVVDESDPDLDEPQIQHLLQSAE---AIRK-DYPDEDWLHLTALIHDLGKV 157 (316)
Q Consensus 102 I~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAE---aiR~-d~p~pdW~qLtGLiHDLGKv 157 (316)
+.++.+.+.......|+..+ ..|.+.++. .|.+ .+.+++-+.++||+||+|+-
T Consensus 15 ~~~~~~~v~~~~~~~~~~h~---~~H~~rV~~~a~~la~~~~~d~~~l~~AaLLHDIg~~ 71 (220)
T 2pq7_A 15 REILNIVREAFKDYDDPAHD---ISHTFRVMENASEIASREKCDLQKAIIAALLHDIKRP 71 (220)
T ss_dssp HHHHHHHHHHHTTCCCTTTS---HHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHHhcCCCchh---HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCCc
Confidence 44555666666554444444 455555544 4433 23466788899999999874
No 16
>3sk9_A Putative uncharacterized protein TTHB187; crispr, CAS, HD domain, nuclease, hydrolase; 1.80A {Thermus thermophilus HB8} PDB: 3skd_A
Probab=77.29 E-value=1.3 Score=40.57 Aligned_cols=47 Identities=28% Similarity=0.404 Sum_probs=34.1
Q ss_pred CCCCCCCchHHHHHHHHHHHHHhc----------------CCC----CCchhhhhhhhcccchhcccCCC
Q 021203 115 ESDPDLDEPQIQHLLQSAEAIRKD----------------YPD----EDWLHLTALIHDLGKVLTLPKFG 164 (316)
Q Consensus 115 eSDPD~dl~qi~H~lQTAEaiR~d----------------~p~----pdW~qLtGLiHDLGKvl~~~~fg 164 (316)
.|+.+- .|.+.|++-||+..+.- +.. ..|+...|++||+||.- +.|.
T Consensus 18 ks~~~~-~~L~~HllDvAava~~L~~~~~~~~r~~la~~~g~~~~~~~~~~~~~~~lHDiGK~~--~~fq 84 (265)
T 3sk9_A 18 KSGNPF-HPLLAHMLDTAAVALAVLRMEPPRTRALYAEDWGLPEEGALAWAAALVGLHDLGKAS--PVFQ 84 (265)
T ss_dssp BSSSTT-SBHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTSCHHHHHHHHHHHHTTTTGGGCS--GGGC
T ss_pred cCCCCc-ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccccc--HHHH
Confidence 344433 89999999999886651 211 36899999999999995 4564
No 17
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=76.00 E-value=1.6 Score=40.27 Aligned_cols=43 Identities=12% Similarity=0.069 Sum_probs=28.8
Q ss_pred CchhHHHHHHHhcCCCCCcchhhhhhhccccccccCCcccccCChh
Q 021203 224 GHDDYMYLVAKENGTTLPSAGLFIVRYHSFYPLHKEGAYAHLMNEE 269 (316)
Q Consensus 224 GHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~hL~ne~ 269 (316)
.|.++=|.++.. ...+|++++.+||+|-= .|--.| -..|..++
T Consensus 231 ~H~~~G~~~ll~-~~~~~~~v~~~i~~HHE-r~dGsG-P~gl~g~~ 273 (328)
T 3tm8_A 231 KHPIEGAQKVQD-KKHFDQTVINIIGQHEE-TINGTG-PKGLREKD 273 (328)
T ss_dssp HHHHHHHHHHTT-CTTSCHHHHHHHHHTTC-CTBSCS-TTCCBGGG
T ss_pred HHHHHHHHHHHH-hCCCcHHHHHHHHHhcC-CCCCCC-CCCCCccc
Confidence 388999994433 36799999999999842 234455 55555433
No 18
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3
Probab=75.99 E-value=1.2 Score=39.85 Aligned_cols=132 Identities=14% Similarity=0.094 Sum_probs=73.1
Q ss_pred HccCCCccccHHHHHHHHH-----hh------hCC--CCCC---CCch-HHHHHHHHHHHHHhcC-----CCCCchhhhh
Q 021203 92 YAKLDKAEMSIWECCELLN-----EV------VDE--SDPD---LDEP-QIQHLLQSAEAIRKDY-----PDEDWLHLTA 149 (316)
Q Consensus 92 ~~~~~~~~MsI~EA~e~Ln-----~l------vDe--SDPD---~dl~-qi~H~lQTAEaiR~d~-----p~pdW~qLtG 149 (316)
+..+.+.--||.+|+.+|- ++ .+. +++. .+.. -..|.+.+|..+++-. .+++=.-++|
T Consensus 76 ~~~~~~~i~si~~Av~~LG~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~hs~~va~~a~~la~~~~~~~~e~a~~aG 155 (297)
T 1vqr_A 76 YYGFTREITTINQVITLLGVGNIINIVMADSIRDNFKIDVSPYGLNTQNFLKTCNEEATFIANWLNDEDKKLSHLLVPCA 155 (297)
T ss_dssp GGTCTTCCCSHHHHHHHHCHHHHHHHHHCCCTTCCCCCCCGGGTCCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 4455666688999987763 11 111 1111 1222 4478877776655432 1345667899
Q ss_pred hhhcccchhcccCCCCCCCceEeccceeeccccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCchhHH
Q 021203 150 LIHDLGKVLTLPKFGGLPQWAVVGDTFPLGCAFDESNVHHKYFKENPDSNNPAYNTKNGIYTEGCGLDNVMISWGHDDYM 229 (316)
Q Consensus 150 LiHDLGKvl~~~~fg~~pQW~VVGDTfPvGC~f~~~iv~~~~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYl 229 (316)
|+||+||+.+...+....+- .+..... .+ | .+-.-.+.-.+...|.+.=
T Consensus 156 LLHDIGkl~l~~~~p~~~~~-------------------~~il~~~---------~~-~--~~l~~~E~~~~g~~H~~iG 204 (297)
T 1vqr_A 156 MLLRLGIVIFSNFLIQNHKD-------------------KDFLAFL---------NK-N--ENLALAENEFLGVDHISFL 204 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCH-------------------HHHHHHH---------HH-H--CCHHHHHHHHTSSCHHHHH
T ss_pred HHHHccHHHHHHHChhhhhH-------------------HHHHHHH---------Hc-C--CCHHHHHHHHHCCCHHHHH
Confidence 99999999854111100000 0000000 00 0 0001123445556799999
Q ss_pred HHHHHhcCCCCCcchhhhhhhccccccc
Q 021203 230 YLVAKENGTTLPSAGLFIVRYHSFYPLH 257 (316)
Q Consensus 230 Y~Vlk~n~stLP~eaL~mIRyHSFYpwH 257 (316)
+.+++. ..||++...+||+|-- ||.
T Consensus 205 a~ll~~--w~lp~~i~~aI~~Hh~-~~~ 229 (297)
T 1vqr_A 205 GFLLHR--WNFDDVLIESICFVRT-PHA 229 (297)
T ss_dssp HHHHHH--TTCCHHHHHHHHTTTC-GGG
T ss_pred HHHHHH--CCCCHHHHHHHHHhcC-hhh
Confidence 999986 4799999999999853 443
No 19
>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Coxiella burnetii}
Probab=69.28 E-value=1.9 Score=42.45 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=28.4
Q ss_pred chHHHHHHH-H---HHHHHhcCCCC-----Cchhhhhhhhcccchhc
Q 021203 122 EPQIQHLLQ-S---AEAIRKDYPDE-----DWLHLTALIHDLGKVLT 159 (316)
Q Consensus 122 l~qi~H~lQ-T---AEaiR~d~p~p-----dW~qLtGLiHDLGKvl~ 159 (316)
=.-++|.|. + |.++++.||-- +=+-..||+||+||++.
T Consensus 74 GGLLeHtLerVa~~A~~l~~~YP~~~~~Er~~l~~aALLHDIGKl~t 120 (393)
T 3kq5_A 74 CSLMNEGLLRGVNSLNHYIQNHPEATPLERYALFSAGLLLEVAHAVV 120 (393)
T ss_dssp THHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTTTTHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhccchhee
Confidence 456799999 5 67788888631 14456899999999973
No 20
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}
Probab=59.62 E-value=2.8 Score=40.51 Aligned_cols=129 Identities=13% Similarity=0.205 Sum_probs=74.1
Q ss_pred HccCCCccccHHHHHH-HH--H---------hhhC---CC-CCCCC-chHHHHHHHHHHHHHhc---C-----CCCCchh
Q 021203 92 YAKLDKAEMSIWECCE-LL--N---------EVVD---ES-DPDLD-EPQIQHLLQSAEAIRKD---Y-----PDEDWLH 146 (316)
Q Consensus 92 ~~~~~~~~MsI~EA~e-~L--n---------~lvD---eS-DPD~d-l~qi~H~lQTAEaiR~d---~-----p~pdW~q 146 (316)
|.++.+.--||.+|+- +| + .+.+ .+ +...+ ..-..|.+.+|..++.- . ++++=.-
T Consensus 230 ~y~~~~~I~si~~Av~rlLG~~~v~~l~~~~~l~~~~~~~~~~~~~~~~~w~hs~~~A~~a~~LA~~~~~~~~~~~~~af 309 (457)
T 3mem_A 230 FYAAAGRVHSVHDAVSRVLGFDLVMNLAMGLALGRALKHPQDHPDGYVDYWQQAIWQAQSAGILASMMPRGQRPLFGLAY 309 (457)
T ss_dssp TTGGGCCCCCHHHHHHTTTCHHHHHHHHHHHHHHTTSCCCSCCCTTSCCHHHHHHHHHHHHHHHHHHSCGGGCCCHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHhcHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHH
Confidence 3345667789999987 32 1 1122 11 11112 34568999888766532 1 2445678
Q ss_pred hhhhhhcccchhcccCCCCCCCceEeccceeeccccCCCcccccccccCCCCCCCCCCCCCCcccCCCCccccccccCch
Q 021203 147 LTALIHDLGKVLTLPKFGGLPQWAVVGDTFPLGCAFDESNVHHKYFKENPDSNNPAYNTKNGIYTEGCGLDNVMISWGHD 226 (316)
Q Consensus 147 LtGLiHDLGKvl~~~~fg~~pQW~VVGDTfPvGC~f~~~iv~~~~F~~NPD~~~p~YnTk~GiY~p~CGLdnV~mSWGHD 226 (316)
++||+||+||+++...+ |+. |. .+ .+....||... -.-.++-.+...|.
T Consensus 310 laGLLhDIGkl~l~~~~---p~~------~~-------~i--~~~~~~~~~~~-------------~~~~E~~~lg~~H~ 358 (457)
T 3mem_A 310 LAGLLHNFGHLVLAQVF---PPH------FK-------LV--CRSLEVSPHID-------------SSVIEHYLLGITRE 358 (457)
T ss_dssp HHHHHTTTHHHHHHHHS---HHH------HH-------HH--HHHHHHCTTSC-------------HHHHHHHHHSSCHH
T ss_pred HHHHHHHhhHHHHHHHC---HHH------HH-------HH--HHHHHhcCCCC-------------HHHHHHHHHcCCHH
Confidence 99999999999964111 111 00 00 00000111100 00123445667899
Q ss_pred hHHHHHHHhcCCCCCcchhhhhhhccc
Q 021203 227 DYMYLVAKENGTTLPSAGLFIVRYHSF 253 (316)
Q Consensus 227 EYlY~Vlk~n~stLP~eaL~mIRyHSF 253 (316)
+.=+.+++. -.||++-...||||--
T Consensus 359 ~vGa~Ll~~--W~lP~~i~~aI~~HH~ 383 (457)
T 3mem_A 359 QIAAQLMEN--WGMPDEVTLAIRYQKN 383 (457)
T ss_dssp HHHHHHHHH--TTCCHHHHHHHHHTTC
T ss_pred HHHHHHHHH--cCCCHHHHHHHHHhcC
Confidence 999999987 4799999999999853
No 21
>3m5f_A Metal dependent phosphohydrolase; CAS3, prokaryotic immune system, HD-motif, structural genomics, PSI-2; 2.30A {Methanocaldococcus jannaschii} PDB: 3s4l_A
Probab=51.74 E-value=9.8 Score=35.11 Aligned_cols=16 Identities=25% Similarity=0.675 Sum_probs=14.0
Q ss_pred Cchhhhhhhhcccchh
Q 021203 143 DWLHLTALIHDLGKVL 158 (316)
Q Consensus 143 dW~qLtGLiHDLGKvl 158 (316)
+++-++++.||+||.-
T Consensus 57 ~ll~~a~llHDiGKa~ 72 (244)
T 3m5f_A 57 EFMKILIKLHDIGKAS 72 (244)
T ss_dssp HHHHHHHHHTTGGGGB
T ss_pred HHHHHHHHHcccccCC
Confidence 5577899999999997
No 22
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens}
Probab=51.50 E-value=6.4 Score=35.01 Aligned_cols=37 Identities=19% Similarity=0.143 Sum_probs=25.9
Q ss_pred chHHHHHHHHHHHHHhcCC-CCCc--hhhhhhhhcccchh
Q 021203 122 EPQIQHLLQSAEAIRKDYP-DEDW--LHLTALIHDLGKVL 158 (316)
Q Consensus 122 l~qi~H~lQTAEaiR~d~p-~pdW--~qLtGLiHDLGKvl 158 (316)
.+.-+|.+++|-..---.+ .-|+ .-..+|+|||+.++
T Consensus 44 ESVAEHS~~vAliA~~l~~~~vD~~r~~~maL~HDl~E~~ 83 (204)
T 4dmb_A 44 ESVSDHMYRMAVMAMVIKDDRLNKDRCVRLALVHDMAECI 83 (204)
T ss_dssp CBHHHHHHHHHHHHHHSCCTTSCHHHHHHHHHHTTTTHHH
T ss_pred CcHHHHHHHHHHHHHHHccccCCHHHHHHHHHhcchHHhh
Confidence 5677999999876554322 2343 45579999999987
No 23
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=47.18 E-value=13 Score=35.52 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=27.5
Q ss_pred chHHHHHHHHHHHHHhc----CCCC-Cchhhhhhhhcccchhc
Q 021203 122 EPQIQHLLQSAEAIRKD----YPDE-DWLHLTALIHDLGKVLT 159 (316)
Q Consensus 122 l~qi~H~lQTAEaiR~d----~p~p-dW~qLtGLiHDLGKvl~ 159 (316)
-.-++|.+.+|...|+- +-++ .-..++||+||+|+.-+
T Consensus 49 ~~r~~Hsl~V~~~a~~ia~~~~~~~~~~~~~AaLLHDiG~~pf 91 (371)
T 2hek_A 49 HTRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGHPPF 91 (371)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTCCSS
T ss_pred CChhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc
Confidence 45678988888877642 2122 45788999999999874
No 24
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=46.79 E-value=10 Score=32.85 Aligned_cols=36 Identities=25% Similarity=0.252 Sum_probs=26.3
Q ss_pred chHHHHHHHHHHH---HHhcCCCCCc-----hhhhhhhhcccchh
Q 021203 122 EPQIQHLLQSAEA---IRKDYPDEDW-----LHLTALIHDLGKVL 158 (316)
Q Consensus 122 l~qi~H~lQTAEa---iR~d~p~pdW-----~qLtGLiHDLGKvl 158 (316)
.+.-+|.+++|-. +-. .+.-|+ .-..+|+|||+.+.
T Consensus 37 EsVAeHS~~vA~iA~~la~-~~~vd~~~~~r~~~maL~HDl~E~~ 80 (173)
T 1ynb_A 37 ESVAEHNFRAAIIAFILAL-KSGESVEKACKAATAALFHDLHEAR 80 (173)
T ss_dssp CBHHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHTTTTHHH
T ss_pred CcHHHHHHHHHHHHHHHhh-hcCCChhHHHHHHHHHHHcchHHhh
Confidence 5678999998875 333 234566 44579999999988
No 25
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=46.11 E-value=34 Score=29.27 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhhCCCC-CC-CCchHHHHHHHHHHHHHhcCCCCCch-hhhhhhhcc
Q 021203 102 IWECCELLNEVVDESD-PD-LDEPQIQHLLQSAEAIRKDYPDEDWL-HLTALIHDL 154 (316)
Q Consensus 102 I~EA~e~Ln~lvDeSD-PD-~dl~qi~H~lQTAEaiR~d~p~pdW~-qLtGLiHDL 154 (316)
|.+|+++-.......- .+ +..|-|.|.+.+|+.+..+.+-.|-- ..+||+||.
T Consensus 9 l~~A~~~A~~~H~gQ~rk~~~G~pyi~Hpl~VA~ila~~l~~~D~~~i~AAlLHDv 64 (179)
T 3nqw_A 9 FMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDV 64 (179)
T ss_dssp HHHHHHHHHHHSTTCBCSSSSCCBTHHHHHHHHHHHHTTTCCCCHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHhccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhH
Confidence 5566666655554432 23 46899999999999998554322443 458999985
No 26
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=43.45 E-value=13 Score=33.29 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=25.4
Q ss_pred CCCCCchHHHHHHHHHHHHHh-cCCCCCchhhhhhhhcccch
Q 021203 117 DPDLDEPQIQHLLQSAEAIRK-DYPDEDWLHLTALIHDLGKV 157 (316)
Q Consensus 117 DPD~dl~qi~H~lQTAEaiR~-d~p~pdW~qLtGLiHDLGKv 157 (316)
|+.-++.-+.-.+.+|..|-+ .+.+++-+.+++|+||+||.
T Consensus 22 ~~~H~~~H~~rV~~~a~~ia~~~~~d~~~~~~AalLHDig~~ 63 (239)
T 3gw7_A 22 DAAHDVCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSL 63 (239)
T ss_dssp -----CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTTC-
T ss_pred CCCccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 444445555555666666654 24578889999999999995
No 27
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=43.31 E-value=14 Score=32.24 Aligned_cols=37 Identities=30% Similarity=0.400 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHHHH-------hcC-CCCCc--hhhhhhhhcccchh
Q 021203 122 EPQIQHLLQSAEAIR-------KDY-PDEDW--LHLTALIHDLGKVL 158 (316)
Q Consensus 122 l~qi~H~lQTAEaiR-------~d~-p~pdW--~qLtGLiHDLGKvl 158 (316)
.+..+|.+++|-... ... +.-|+ ..+.||+||+|+++
T Consensus 30 EnVaeHS~~VA~lA~~la~~~~~~~~~~vD~~~~~~~aLlHDi~E~~ 76 (201)
T 2paq_A 30 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVL 76 (201)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTTHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhhHHhcCcccCHHHHHHHHHhccccccc
Confidence 567899999886432 222 23344 44579999999998
No 28
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=41.99 E-value=38 Score=29.01 Aligned_cols=53 Identities=21% Similarity=0.287 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhhCCC-CCCC-CchHHHHHHHHHHHHHhcCCCCCc-hhhhhhhhcc
Q 021203 102 IWECCELLNEVVDES-DPDL-DEPQIQHLLQSAEAIRKDYPDEDW-LHLTALIHDL 154 (316)
Q Consensus 102 I~EA~e~Ln~lvDeS-DPD~-dl~qi~H~lQTAEaiR~d~p~pdW-~qLtGLiHDL 154 (316)
|.+|+++-....... ..+. ..|-|.|.+++|+.+..+.+-.|- ...+||+||.
T Consensus 7 l~~A~~~A~~aH~gQ~rk~~~G~PYi~Hpl~VA~il~~~~~~~d~~~i~AALLHDv 62 (178)
T 3nr1_A 7 LLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDT 62 (178)
T ss_dssp HHHHHHHHHHHTTTCBCSSTTCCBTTHHHHHHHHHHHHTSCCCCHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHcccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhH
Confidence 344555544443333 2232 478999999999999655432355 4568999985
No 29
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=31.74 E-value=37 Score=32.88 Aligned_cols=52 Identities=17% Similarity=0.114 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHHHHhcCCCCCchhhhhhhhcc
Q 021203 102 IWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKDYPDEDWLHLTALIHDL 154 (316)
Q Consensus 102 I~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGLiHDL 154 (316)
|.+|+++-.......-.....|-|.|.+.+|+.+..-+-+++ ...+||+||.
T Consensus 28 l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~-~i~AALLHDv 79 (393)
T 1vj7_A 28 VKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAV-TVACGFLHDV 79 (393)
T ss_dssp HHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHH-HHHHHHHTTH
T ss_pred HHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcCCHH-HHHHHHhhhH
Confidence 556666665554333223457889999999999987654434 5568999995
No 30
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=31.71 E-value=21 Score=34.40 Aligned_cols=18 Identities=44% Similarity=0.547 Sum_probs=14.4
Q ss_pred CCCchhhhhhhhcccchh
Q 021203 141 DEDWLHLTALIHDLGKVL 158 (316)
Q Consensus 141 ~pdW~qLtGLiHDLGKvl 158 (316)
+++-....||+||+|+.-
T Consensus 97 ~~~l~~~a~LlHDiGh~P 114 (376)
T 2dqb_A 97 NEDLTEAIALSHDLGHPP 114 (376)
T ss_dssp CHHHHHHHHHHTTTTCCS
T ss_pred CHHHHHHHHHHHhcCCCc
Confidence 456678899999999864
No 31
>2l3i_A Aoxki4A, antimicrobial peptide in spider venom; antimicrobial protein; NMR {Araneae}
Probab=31.49 E-value=34 Score=22.20 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=21.3
Q ss_pred cccCchhHHHHHHHhcCCCCCcchhhhhhhccc
Q 021203 221 ISWGHDDYMYLVAKENGTTLPSAGLFIVRYHSF 253 (316)
Q Consensus 221 mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSF 253 (316)
-||--..+--+|||. -|+|+|-|.|
T Consensus 6 kswkckafkqrvlkr--------llamlrqhaf 30 (30)
T 2l3i_A 6 KSWKCKAFKQRVLKR--------LLAMLRQHAF 30 (30)
T ss_dssp SCSCCCHHHHHHHHH--------HHHHHHTCCC
T ss_pred cchhHHHHHHHHHHH--------HHHHHHHhcC
Confidence 478888888899986 6999999977
No 32
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A
Probab=31.22 E-value=21 Score=34.39 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHH-HHhcCCCCCchhhhhhhh-cccchh
Q 021203 123 PQIQHLLQSAEA-IRKDYPDEDWLHLTALIH-DLGKVL 158 (316)
Q Consensus 123 ~qi~H~lQTAEa-iR~d~p~pdW~qLtGLiH-DLGKvl 158 (316)
...+|+|++... |..+.+.+.++-|++|+| |+||-.
T Consensus 266 ~v~~h~L~~~d~~i~~~~~~~~~L~lAALLH~di~K~~ 303 (415)
T 3aql_A 266 RIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETA 303 (415)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHhHhcCcchhhhh
Confidence 467888887544 666667778999999999 999964
No 33
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=28.99 E-value=47 Score=32.25 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=37.5
Q ss_pred HHHHHHHHccCCCccccHHHHHHHHHhhhCC-------CCCCCCchHHHHHHHHHHHH
Q 021203 85 VKKMREEYAKLDKAEMSIWECCELLNEVVDE-------SDPDLDEPQIQHLLQSAEAI 135 (316)
Q Consensus 85 v~~~~~~~~~~~~~~MsI~EA~e~Ln~lvDe-------SDPD~dl~qi~H~lQTAEai 135 (316)
.++...+|...-|..-++.+|++.|..|-.+ .+...+.-.+.+++.+|++|
T Consensus 443 l~~~m~~~~gi~R~~~~L~~a~~~l~~l~~~~~~~~~~~~~~~~~~e~~~~~~~a~~~ 500 (540)
T 1chu_A 443 LRLFMWDYVGIVRTTKRLERALRRITMLQQEIDEYYAHFRVSNNLLELRNLVQVAELI 500 (540)
T ss_dssp HHHHHHHHSSSSBCHHHHHHHHHHHHHHHHHHHHHHTTBCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCcccCHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 4556667888889888999999999887432 22222345788999999987
No 34
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1
Probab=28.53 E-value=42 Score=29.90 Aligned_cols=60 Identities=20% Similarity=0.125 Sum_probs=36.9
Q ss_pred cccHHHHHHHHHhhhCCC---CCCCCchHHHHHHHHHHHHHhcCCCCCc-hhhhhhhhcccchh
Q 021203 99 EMSIWECCELLNEVVDES---DPDLDEPQIQHLLQSAEAIRKDYPDEDW-LHLTALIHDLGKVL 158 (316)
Q Consensus 99 ~MsI~EA~e~Ln~lvDeS---DPD~dl~qi~H~lQTAEaiR~d~p~pdW-~qLtGLiHDLGKvl 158 (316)
.+.|.+-++.|..+.--+ .-..-.+.-+|.+++|.....-.|.-++ ..+.+|+||++.++
T Consensus 28 ~i~i~dia~~Lk~i~R~~~~~~~~~~eSVAeHS~~va~ia~~l~~~~~~r~~~~aL~HD~~E~~ 91 (207)
T 2gz4_A 28 DVEIADIAHGLARVARWNGQTRGDHAFTVAQHCLIVETIFCRMCPGATPDEMQMALLHDAPEYV 91 (207)
T ss_dssp GCCHHHHHHHHTTCBSGGGCCSSSSCCBHHHHHHHHHHHHHHHCTTCCHHHHHHHHTTTTTHHH
T ss_pred hhhHHHHHHHHhhCcccCCCCCCCCCccHHHHHHHHHHHHHHHCCCCCHHHHHHHHhcCchHhh
Confidence 445555555555432211 1112368889999999877643332232 56689999999988
No 35
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=28.04 E-value=15 Score=35.65 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=11.6
Q ss_pred chhhhhhhhcccchh
Q 021203 144 WLHLTALIHDLGKVL 158 (316)
Q Consensus 144 W~qLtGLiHDLGKvl 158 (316)
-..++||+||+|+-=
T Consensus 88 ~~~~AaLlHDiGh~P 102 (410)
T 2q14_A 88 AVQAAILLHDIGHGP 102 (410)
T ss_dssp HHHHHHHHTTTTCCT
T ss_pred HHHHHHHHhccCCCc
Confidence 356789999999854
No 36
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=27.13 E-value=28 Score=29.45 Aligned_cols=37 Identities=22% Similarity=0.200 Sum_probs=23.4
Q ss_pred chHHHHHHHHHHHH---Hh----cCC--CCCchhhhhhhhcccchh
Q 021203 122 EPQIQHLLQSAEAI---RK----DYP--DEDWLHLTALIHDLGKVL 158 (316)
Q Consensus 122 l~qi~H~lQTAEai---R~----d~p--~pdW~qLtGLiHDLGKvl 158 (316)
.+..+|.++.|... -. .++ +++...+.+|+||++.++
T Consensus 31 esvaeHs~rVa~~A~~la~~~~~~~~~~d~~~v~~~aLlHD~~E~~ 76 (177)
T 2cqz_A 31 ESIADHSFGVAFITLVLADVLEKRGKRIDVEKALKMAIVHDLAEAI 76 (177)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHH
Confidence 45566766665433 22 223 444567899999998885
No 37
>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}
Probab=26.29 E-value=79 Score=27.08 Aligned_cols=47 Identities=19% Similarity=0.332 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHccCC---CccccHHHHHHHHHhhhCCCCCCCCchHHHHHHHHHHHHHhc
Q 021203 81 TYDFVKKMREEYAKLD---KAEMSIWECCELLNEVVDESDPDLDEPQIQHLLQSAEAIRKD 138 (316)
Q Consensus 81 Tvdfv~~~~~~~~~~~---~~~MsI~EA~e~Ln~lvDeSDPD~dl~qi~H~lQTAEaiR~d 138 (316)
|-+=..++|++|-.-- -++.-||+|+..--+++.+.| ++||.+|-..
T Consensus 34 Tr~qL~~~R~EFWDT~p~~~Gr~EIW~ALraA~~~~e~~D-----------l~tAQ~Ilda 83 (137)
T 2ksn_A 34 TDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESND-----------HELAQAIIDG 83 (137)
T ss_dssp SHHHHHHHHHHHHTTSSTTCCCHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCC-----------HHHHHHHHHH
Confidence 4445677999987644 578899999998888776555 5778887655
No 38
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1
Probab=24.76 E-value=57 Score=28.14 Aligned_cols=37 Identities=30% Similarity=0.293 Sum_probs=26.7
Q ss_pred chHHHHHHHHHHHH---H----hcCCCCCc--hhhhhhhhcccchh
Q 021203 122 EPQIQHLLQSAEAI---R----KDYPDEDW--LHLTALIHDLGKVL 158 (316)
Q Consensus 122 l~qi~H~lQTAEai---R----~d~p~pdW--~qLtGLiHDLGKvl 158 (316)
.+..+|.+++|-.. . +.+|.-|+ .-+.+|+||++.++
T Consensus 36 EsvAeHS~~vA~ia~~la~~~~~~~~~~d~~r~~~~aL~HDl~E~~ 81 (184)
T 1xx7_A 36 ESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGEAI 81 (184)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHcCcHHhh
Confidence 57789998888632 2 22455676 45689999999988
No 39
>3mzo_A LIN2634 protein; HD-domain phosphohydrolase, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.98A {Listeria innocua}
Probab=22.96 E-value=1.5e+02 Score=26.07 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=26.3
Q ss_pred chHHHHHHHHHHHH-------HhcCCCCCc--hhhhhhhhcccchh
Q 021203 122 EPQIQHLLQSAEAI-------RKDYPDEDW--LHLTALIHDLGKVL 158 (316)
Q Consensus 122 l~qi~H~lQTAEai-------R~d~p~pdW--~qLtGLiHDLGKvl 158 (316)
.+.-+|.+++|-.. +..+++-|| +-+.+|+||++.++
T Consensus 29 EsvAeHS~~vA~iA~~La~~~~~~~~~vD~~r~~~maL~HDl~E~~ 74 (216)
T 3mzo_A 29 HSVAEHSYKVTSIAQFFGAVEEDAGNEVNWRALYEKALNHDYSELF 74 (216)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTGGGGT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHccHHHHH
Confidence 56778888876532 223445677 56799999999988
No 40
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide triphosphohydrolase, hydrolase; 3.10A {Homo sapiens}
Probab=21.42 E-value=57 Score=33.08 Aligned_cols=13 Identities=38% Similarity=0.728 Sum_probs=10.5
Q ss_pred hhhhhhhhcccch
Q 021203 145 LHLTALIHDLGKV 157 (316)
Q Consensus 145 ~qLtGLiHDLGKv 157 (316)
++++||+||+|--
T Consensus 101 v~~AaLlHDiGH~ 113 (528)
T 3u1n_A 101 VQIAGLCHDLGHG 113 (528)
T ss_dssp HHHHHHHTTTTCB
T ss_pred HHHHHHHhccCCC
Confidence 5678999999954
Done!