Query 021204
Match_columns 316
No_of_seqs 168 out of 1535
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 08:24:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021204.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021204hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0819 Annexin [Intracellular 100.0 8.6E-92 1.9E-96 622.4 28.2 315 1-315 6-321 (321)
2 KOG0819 Annexin [Intracellular 100.0 3.5E-53 7.6E-58 376.1 16.3 227 4-238 81-319 (321)
3 PF00191 Annexin: Annexin; In 99.7 1E-17 2.2E-22 119.1 7.6 66 15-80 1-66 (66)
4 PF00191 Annexin: Annexin; In 99.7 1.5E-17 3.3E-22 118.1 8.4 66 245-310 1-66 (66)
5 smart00335 ANX Annexin repeats 99.5 1.2E-13 2.5E-18 93.6 6.0 53 28-80 1-53 (53)
6 smart00335 ANX Annexin repeats 99.4 2.5E-13 5.4E-18 92.0 6.0 53 258-310 1-53 (53)
7 COG5118 BDP1 Transcription ini 61.0 29 0.00063 32.7 6.5 43 12-57 368-410 (507)
8 PF00249 Myb_DNA-binding: Myb- 55.5 36 0.00079 21.6 4.7 36 13-48 5-42 (48)
9 PF14003 YlbE: YlbE-like prote 52.7 19 0.00042 25.0 3.1 48 263-311 13-61 (65)
10 PF13758 Prefoldin_3: Prefoldi 48.7 91 0.002 23.7 6.4 60 7-66 25-92 (99)
11 PF15173 FAM180: FAM180 family 38.9 1.5E+02 0.0033 23.7 6.6 69 183-269 59-127 (137)
12 COG5118 BDP1 Transcription ini 37.9 40 0.00086 31.8 3.6 58 170-227 371-428 (507)
13 PF14003 YlbE: YlbE-like prote 37.6 39 0.00083 23.5 2.7 29 194-222 18-46 (65)
14 PRK10969 DNA polymerase III su 36.9 79 0.0017 22.6 4.2 36 273-308 17-53 (75)
15 smart00717 SANT SANT SWI3, AD 35.9 1E+02 0.0022 18.6 4.8 36 14-49 6-42 (49)
16 PF13766 ECH_C: 2-enoyl-CoA Hy 35.3 57 0.0012 25.5 3.8 49 188-236 35-91 (118)
17 TIGR03031 cas_csx12 CRISPR-ass 32.0 1.1E+02 0.0024 30.9 5.8 55 29-83 237-291 (802)
18 TIGR02923 AhaC ATP synthase A1 30.7 4.2E+02 0.0092 24.3 13.8 103 22-135 13-117 (343)
19 cd00167 SANT 'SWI3, ADA2, N-Co 30.1 1.2E+02 0.0027 17.9 4.8 35 14-48 4-39 (45)
20 COG5173 SEC6 Exocyst complex s 29.6 3.8E+02 0.0083 27.0 8.9 52 105-157 295-347 (742)
21 PF13720 Acetyltransf_11: Udp 28.3 86 0.0019 22.8 3.5 21 40-60 27-47 (83)
22 cd00171 Sec7 Sec7 domain; Doma 26.8 2.3E+02 0.0051 23.9 6.4 53 11-67 32-87 (185)
23 KOG0859 Synaptobrevin/VAMP-lik 25.3 1.7E+02 0.0036 25.3 5.0 66 114-180 76-142 (217)
24 PF11264 ThylakoidFormat: Thyl 24.0 4.9E+02 0.011 22.8 9.0 81 10-98 61-149 (216)
25 PF13921 Myb_DNA-bind_6: Myb-l 22.9 1.4E+02 0.003 19.7 3.5 38 15-55 4-41 (60)
26 KOG2286 Exocyst complex subuni 22.9 5.7E+02 0.012 26.5 9.2 208 85-314 235-450 (667)
27 TIGR02029 AcsF magnesium-proto 22.2 2.4E+02 0.0053 26.1 5.8 32 28-59 19-50 (337)
28 PF08748 DUF1789: Domain of un 22.1 1.4E+02 0.0029 23.9 3.8 45 168-212 74-121 (128)
29 PRK13654 magnesium-protoporphy 22.0 2.3E+02 0.005 26.5 5.6 32 28-59 29-60 (355)
30 CHL00185 ycf59 magnesium-proto 21.8 2.5E+02 0.0055 26.2 5.8 32 28-59 25-56 (351)
31 cd01047 ACSF Aerobic Cyclase S 21.8 2.5E+02 0.0055 25.9 5.8 31 29-59 10-40 (323)
32 COG4800 Predicted transcriptio 21.0 1.8E+02 0.0039 23.6 4.2 68 174-243 45-128 (170)
33 PF01992 vATP-synt_AC39: ATP s 20.3 3.2E+02 0.007 24.9 6.6 48 244-293 172-220 (337)
No 1
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.6e-92 Score=622.45 Aligned_cols=315 Identities=47% Similarity=0.692 Sum_probs=311.5
Q ss_pred CccccCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHhcCCCHHHHHHHHHHhhhhhcccHHHHhhhhcchhHHHHHHHh
Q 021204 1 MATLKVPTQTPSAAEDAEQLHKAFQGWGTNEALIISVLAHRNAAQRKLIREIYNETYGEDLLKALDKELSSDFERSVLLW 80 (316)
Q Consensus 1 m~~~~~~~~~~~~~~da~~L~~A~~g~g~de~~li~il~~rs~~q~~~i~~~Y~~~~g~~L~~~i~~~~sg~~~~~l~~l 80 (316)
|++.++|.++|+|..||+.|++||+||||||++||+||++|||.||++|+++|+..||++|.++|++++||+|++++++|
T Consensus 6 ~~~t~~~~~~f~p~~DAe~L~kA~kG~Gtde~aII~iL~~Rsn~QRq~I~~ayk~~ygkDLi~~Lk~ELsG~Fe~~i~al 85 (321)
T KOG0819|consen 6 MAGTVVPAPVFDPVQDAEQLRKAMKGFGTDEQAIIDILTHRSNAQRQLIRAAYKTMYGKDLIKDLKSELSGDFERAIVAL 85 (321)
T ss_pred CCcccCCCCCCChHHHHHHHHHHHhcCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHhHHHHHHHHHHhCccHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHhcCCCCChHHHHHHHhcCCHHHHHHHHHHHHHhccccHHHHHhhcccchhhhhHHHhhhcccccc
Q 021204 81 TLTPAERDAYLANEATKRFTLSNWVLMEIACTRSSRDLFAAKQAYHARYKKSLEEDVAYHTSGDFRKLLVPLVSTFRYDG 160 (316)
Q Consensus 81 ~~~~~~~da~~l~~A~kg~gtde~~li~il~~rs~~~l~~i~~~Y~~~~~~~L~~~I~~~~sg~~~~lll~ll~~~r~~~ 160 (316)
+.+|+++||+.|++||||.|||+.+||||+|+|+|.|+++|+++|+..|+++|+++|.+++||+|+++|+.|+.+.|+|+
T Consensus 86 ~~~p~~~DA~~l~~amkg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~~~~R~e~ 165 (321)
T KOG0819|consen 86 MKPPAEYDAKELKKAMKGLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLVQGNRDEG 165 (321)
T ss_pred cCCHHHhHHHHHHHHHhccCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHHHHHhcCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccChhhHHHHHHHHHhcccC-CCCChHHHHHHHhcCCHHHHHHHHHHHHhccCCchHHHhccCCCchHHHHHHHHHHhc
Q 021204 161 GDVNMMLARTEAKILRDKISD-KDYAHEELIRILTTRSKAQINATLNHYNDTFGNAINKDLKADPNDEYLKLLRAAIKCL 239 (316)
Q Consensus 161 ~~vd~~~~~~da~~L~~A~~g-~gtde~~li~il~~rs~~~l~~I~~~Y~~~~g~~L~~~I~~~~sg~~~~~Ll~l~~~~ 239 (316)
..||..+|..||+.|++|+++ +|||+..|++||++||..||+.+++.|++.+|+++++.|++++||+++++|+++++|.
T Consensus 166 ~~vd~~la~~dA~~L~~Age~k~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e~~gd~~~~llaiv~c~ 245 (321)
T KOG0819|consen 166 DRVDDALAKQDAQDLYEAGEKKWGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEEFSGDFEKLLLAIVKCI 245 (321)
T ss_pred CCcCHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhccCchHHHHHHHHHHHH
Confidence 899999999999999999998 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhccCCCCchhHHHHHHhcCHHHHHHHHHHHHhhcCccHHHHHhhcCcHHHHHHHHHhhcCCC
Q 021204 240 TYPEKHFAKVLRLAINGLGTDEWGLTRVVTTRAEVDMQRIKEEYHRRNTVTLEKAIAGDTSGDYERMLLALIGHGD 315 (316)
Q Consensus 240 ~~~~~~~A~~L~~a~~g~gtd~~~liril~~r~~~~l~~i~~~Y~~~yg~~L~~~I~~~~sg~~~~~ll~l~~~~~ 315 (316)
+|||.|||+.||.||+|.|||+.+||||+++|+|+||..|+++|+++||+||.++|+++|||||+++|++||++++
T Consensus 246 ~n~~~yFA~~L~~amkg~GTdd~~LiRI~VsRsEiDl~~Ik~ef~~~Y~ksL~~~I~~dtsGdY~~~LlaL~g~~~ 321 (321)
T KOG0819|consen 246 RNPPAYFAERLRKAMKGLGTDDKTLIRIVVSRSEIDLLDIKEEFQRKYGKSLYSAIKGDTSGDYKKALLALLGGDD 321 (321)
T ss_pred cCHHHHHHHHHHHHHhccCCCccceeeeeeeHHHhhHHHHHHHHHHHhCccHHHHHhhhccchHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-53 Score=376.10 Aligned_cols=227 Identities=27% Similarity=0.403 Sum_probs=216.7
Q ss_pred ccCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHhcCCCHHHHHHHHHHhhhhhcccHHHHhhhhcchhHHHHHHHhcCC
Q 021204 4 LKVPTQTPSAAEDAEQLHKAFQGWGTNEALIISVLAHRNAAQRKLIREIYNETYGEDLLKALDKELSSDFERSVLLWTLT 83 (316)
Q Consensus 4 ~~~~~~~~~~~~da~~L~~A~~g~g~de~~li~il~~rs~~q~~~i~~~Y~~~~g~~L~~~i~~~~sg~~~~~l~~l~~~ 83 (316)
.+|.+..+|++.||++|++||+|+||||++||+|+|+|||.|+++|+++|+..|+++|+++|.+++||+|+++|+.++.+
T Consensus 81 ~i~al~~~p~~~DA~~l~~amkg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~~~ 160 (321)
T KOG0819|consen 81 AIVALMKPPAEYDAKELKKAMKGLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLVQG 160 (321)
T ss_pred HHHHHcCCHHHhHHHHHHHHHhccCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHHHHHhc
Confidence 34556667999999999999999999999999999999999999999999999999999999999999999999999853
Q ss_pred -----------CcHHHHHHHHHHhcC-CCCChHHHHHHHhcCCHHHHHHHHHHHHHhccccHHHHHhhcccchhhhhHHH
Q 021204 84 -----------PAERDAYLANEATKR-FTLSNWVLMEIACTRSSRDLFAAKQAYHARYKKSLEEDVAYHTSGDFRKLLVP 151 (316)
Q Consensus 84 -----------~~~~da~~l~~A~kg-~gtde~~li~il~~rs~~~l~~i~~~Y~~~~~~~L~~~I~~~~sg~~~~lll~ 151 (316)
.++.||+.|++|.++ +|||+..++.||++||..|++.+.+.|+..+|+++++.|++++||+|+.+|++
T Consensus 161 ~R~e~~~vd~~la~~dA~~L~~Age~k~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e~~gd~~~~lla 240 (321)
T KOG0819|consen 161 NRDEGDRVDDALAKQDAQDLYEAGEKKWGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEEFSGDFEKLLLA 240 (321)
T ss_pred CCccCCCcCHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhccCchHHHHHHH
Confidence 268899999999974 78999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccccChhhHHHHHHHHHhcccCCCCChHHHHHHHhcCCHHHHHHHHHHHHhccCCchHHHhccCCCchHHHH
Q 021204 152 LVSTFRYDGGDVNMMLARTEAKILRDKISDKDYAHEELIRILTTRSKAQINATLNHYNDTFGNAINKDLKADPNDEYLKL 231 (316)
Q Consensus 152 ll~~~r~~~~~vd~~~~~~da~~L~~A~~g~gtde~~li~il~~rs~~~l~~I~~~Y~~~~g~~L~~~I~~~~sg~~~~~ 231 (316)
++.|.|+. +.++|+.||.||+|.|||+.+||||+++||+.+|..|+..|+++||++|.++|++.+||+|+++
T Consensus 241 iv~c~~n~--------~~yFA~~L~~amkg~GTdd~~LiRI~VsRsEiDl~~Ik~ef~~~Y~ksL~~~I~~dtsGdY~~~ 312 (321)
T KOG0819|consen 241 IVKCIRNP--------PAYFAERLRKAMKGLGTDDKTLIRIVVSRSEIDLLDIKEEFQRKYGKSLYSAIKGDTSGDYKKA 312 (321)
T ss_pred HHHHHcCH--------HHHHHHHHHHHHhccCCCccceeeeeeeHHHhhHHHHHHHHHHHhCccHHHHHhhhccchHHHH
Confidence 99999886 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 021204 232 LRAAIKC 238 (316)
Q Consensus 232 Ll~l~~~ 238 (316)
|++|+++
T Consensus 313 LlaL~g~ 319 (321)
T KOG0819|consen 313 LLALLGG 319 (321)
T ss_pred HHHHhCC
Confidence 9999865
No 3
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.73 E-value=1e-17 Score=119.07 Aligned_cols=66 Identities=44% Similarity=0.782 Sum_probs=63.1
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHhcCCCHHHHHHHHHHhhhhhcccHHHHhhhhcchhHHHHHHHh
Q 021204 15 EDAEQLHKAFQGWGTNEALIISVLAHRNAAQRKLIREIYNETYGEDLLKALDKELSSDFERSVLLW 80 (316)
Q Consensus 15 ~da~~L~~A~~g~g~de~~li~il~~rs~~q~~~i~~~Y~~~~g~~L~~~i~~~~sg~~~~~l~~l 80 (316)
.||+.|++|++|+|+|+..+++|+++||+.|+++|+++|+..||++|.++|++++||+|++++++|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 589999999999999999999999999999999999999999999999999999999999999875
No 4
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.73 E-value=1.5e-17 Score=118.10 Aligned_cols=66 Identities=39% Similarity=0.609 Sum_probs=63.6
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHhcCHHHHHHHHHHHHhhcCccHHHHHhhcCcHHHHHHHHHh
Q 021204 245 HFAKVLRLAINGLGTDEWGLTRVVTTRAEVDMQRIKEEYHRRNTVTLEKAIAGDTSGDYERMLLAL 310 (316)
Q Consensus 245 ~~A~~L~~a~~g~gtd~~~liril~~r~~~~l~~i~~~Y~~~yg~~L~~~I~~~~sg~~~~~ll~l 310 (316)
+||+.|+.|++|+|+|+..|++|+++|++.|+..|+++|++.||++|+++|++++||+|+++|++|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 589999999999999999999999999999999999999999999999999999999999999986
No 5
>smart00335 ANX Annexin repeats.
Probab=99.46 E-value=1.2e-13 Score=93.63 Aligned_cols=53 Identities=40% Similarity=0.661 Sum_probs=51.1
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHhhhhhcccHHHHhhhhcchhHHHHHHHh
Q 021204 28 GTNEALIISVLAHRNAAQRKLIREIYNETYGEDLLKALDKELSSDFERSVLLW 80 (316)
Q Consensus 28 g~de~~li~il~~rs~~q~~~i~~~Y~~~~g~~L~~~i~~~~sg~~~~~l~~l 80 (316)
||||+.|++|+++||+.||+.|+.+|+..||++|.++|++++||+|+++++.|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 69999999999999999999999999999999999999999999999998764
No 6
>smart00335 ANX Annexin repeats.
Probab=99.43 E-value=2.5e-13 Score=92.00 Aligned_cols=53 Identities=43% Similarity=0.728 Sum_probs=51.6
Q ss_pred CCCchhHHHHHHhcCHHHHHHHHHHHHhhcCccHHHHHhhcCcHHHHHHHHHh
Q 021204 258 GTDEWGLTRVVTTRAEVDMQRIKEEYHRRNTVTLEKAIAGDTSGDYERMLLAL 310 (316)
Q Consensus 258 gtd~~~liril~~r~~~~l~~i~~~Y~~~yg~~L~~~I~~~~sg~~~~~ll~l 310 (316)
|||+..|++|+++|++.|+..|+++|++.||++|.++|++++||+|+++|++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 69999999999999999999999999999999999999999999999999875
No 7
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=60.97 E-value=29 Score=32.68 Aligned_cols=43 Identities=28% Similarity=0.443 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHhhhcCCCCHHHHHHHhcCCCHHHHHHHHHHhhhhh
Q 021204 12 SAAEDAEQLHKAFQGWGTNEALIISVLAHRNAAQRKLIREIYNETY 57 (316)
Q Consensus 12 ~~~~da~~L~~A~~g~g~de~~li~il~~rs~~q~~~i~~~Y~~~~ 57 (316)
+...|.+..|+|++-||||-..|..++.+|+. .+|+.-|.+.-
T Consensus 368 Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~R---kqIKaKfi~Ee 410 (507)
T COG5118 368 WSKKEIEKFYKALSIWGTDFSLISSLFPNRER---KQIKAKFIKEE 410 (507)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHhcCchhH---HHHHHHHHHHh
Confidence 45788999999999999999998898887665 55566666543
No 8
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=55.46 E-value=36 Score=21.60 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhhcCCCC-HHHHHHHhc-CCCHHHHHH
Q 021204 13 AAEDAEQLHKAFQGWGTN-EALIISVLA-HRNAAQRKL 48 (316)
Q Consensus 13 ~~~da~~L~~A~~g~g~d-e~~li~il~-~rs~~q~~~ 48 (316)
...+-+.|.+|++..|.+ =..|..-+. +||+.|...
T Consensus 5 t~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~ 42 (48)
T PF00249_consen 5 TEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRS 42 (48)
T ss_dssp -HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHH
Confidence 345667889999999998 678888888 999998764
No 9
>PF14003 YlbE: YlbE-like protein
Probab=52.71 E-value=19 Score=25.01 Aligned_cols=48 Identities=10% Similarity=0.212 Sum_probs=37.1
Q ss_pred hHHHHHHhcCHHHHHHHHHHHHhhcCccHHHHHhhcCcH-HHHHHHHHhh
Q 021204 263 GLTRVVTTRAEVDMQRIKEEYHRRNTVTLEKAIAGDTSG-DYERMLLALI 311 (316)
Q Consensus 263 ~liril~~r~~~~l~~i~~~Y~~~yg~~L~~~I~~~~sg-~~~~~ll~l~ 311 (316)
.|-|+|. |.|.++...-.++...||+++-+.|.+-..| ....+++..+
T Consensus 13 ~WYR~Ls-R~P~~l~~fe~~a~~~y~kT~p~rVek~~n~lqMa~MM~~M~ 61 (65)
T PF14003_consen 13 IWYRILS-RNPEELEAFEKEAKHFYKKTIPHRVEKFSNQLQMASMMMEMF 61 (65)
T ss_pred HHHHHHc-cCHHHHHHHHHHHHHHHhccccHHHHHHHhHHHHHHHHHHHH
Confidence 4567766 9999999999999999999999999876544 3555555444
No 10
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=48.72 E-value=91 Score=23.67 Aligned_cols=60 Identities=25% Similarity=0.274 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHhcC-----CCHHHHHHHHH---HhhhhhcccHHHHhh
Q 021204 7 PTQTPSAAEDAEQLHKAFQGWGTNEALIISVLAH-----RNAAQRKLIRE---IYNETYGEDLLKALD 66 (316)
Q Consensus 7 ~~~~~~~~~da~~L~~A~~g~g~de~~li~il~~-----rs~~q~~~i~~---~Y~~~~g~~L~~~i~ 66 (316)
|..+.++..|...+++-+.|-..+++.|-+||+. ||++|+..+.. .|-..-=..|.+.|.
T Consensus 25 ~~~~~~~~e~l~~i~r~f~g~lv~~kEi~~ilG~~~~i~Rt~~Qvv~~l~RRiDYV~~Ni~tleKql~ 92 (99)
T PF13758_consen 25 PEDDDATREDLLRIRRDFGGSLVTEKEIKEILGEGQGITRTREQVVDVLSRRIDYVQQNIETLEKQLE 92 (99)
T ss_pred cccCCCCHHHHHHHHHhcCcccccHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333567788888999999988999999999998 88899887744 354443344444443
No 11
>PF15173 FAM180: FAM180 family
Probab=38.88 E-value=1.5e+02 Score=23.75 Aligned_cols=69 Identities=12% Similarity=0.111 Sum_probs=51.0
Q ss_pred CCChHHHHHHHhcCCHHHHHHHHHHHHhccCCchHHHhccCCCchHHHHHHHHHHhcCCChHHHHHHHHHHhccCCCCch
Q 021204 183 DYAHEELIRILTTRSKAQINATLNHYNDTFGNAINKDLKADPNDEYLKLLRAAIKCLTYPEKHFAKVLRLAINGLGTDEW 262 (316)
Q Consensus 183 gtde~~li~il~~rs~~~l~~I~~~Y~~~~g~~L~~~I~~~~sg~~~~~Ll~l~~~~~~~~~~~A~~L~~a~~g~gtd~~ 262 (316)
+.+-..+++-++-++..+++...+.+.+.-| .|. .-||+..+++++.| |+.++.+.+| ...+
T Consensus 59 ~~~l~~ic~~viPk~l~di~rl~~~ls~~~g-~L~-------~~DFErtlLTlvy~--------ayr~~~s~~~--~qr~ 120 (137)
T PF15173_consen 59 ARRLEVICQDVIPKSLPDIRRLSAQLSQHRG-PLS-------PEDFERTLLTLVYT--------AYRLANSSEG--HQRD 120 (137)
T ss_pred hhHHHHHHHHHCCCcHHHHHHHHHHHHhCCC-CCC-------HHHHHHHHHHHHHH--------HHHHHHhhhH--HHHH
Confidence 4567888888888999999999998887766 332 35899999999866 7778777665 4445
Q ss_pred hHHHHHH
Q 021204 263 GLTRVVT 269 (316)
Q Consensus 263 ~liril~ 269 (316)
.|.+.++
T Consensus 121 ~Wa~~f~ 127 (137)
T PF15173_consen 121 RWAQSFV 127 (137)
T ss_pred HHHHHHH
Confidence 5555544
No 12
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=37.86 E-value=40 Score=31.83 Aligned_cols=58 Identities=16% Similarity=0.137 Sum_probs=42.9
Q ss_pred HHHHHHHhcccCCCCChHHHHHHHhcCCHHHHHHHHHHHHhccCCchHHHhccCCCch
Q 021204 170 TEAKILRDKISDKDYAHEELIRILTTRSKAQINATLNHYNDTFGNAINKDLKADPNDE 227 (316)
Q Consensus 170 ~da~~L~~A~~g~gtde~~li~il~~rs~~~l~~I~~~Y~~~~g~~L~~~I~~~~sg~ 227 (316)
.+.+.+|+|+.-||||...+-.++-+|+..|+.+=+..=++..---+.++++....-+
T Consensus 371 ~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~nP~rIn~aL~~kkp~d 428 (507)
T COG5118 371 KEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKVNPERINEALNEKKPFD 428 (507)
T ss_pred HHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhhCHHHHHHHHhccCCCC
Confidence 5778899999999999999999999999988776554444444445666666544433
No 13
>PF14003 YlbE: YlbE-like protein
Probab=37.58 E-value=39 Score=23.54 Aligned_cols=29 Identities=10% Similarity=0.202 Sum_probs=26.3
Q ss_pred hcCCHHHHHHHHHHHHhccCCchHHHhcc
Q 021204 194 TTRSKAQINATLNHYNDTFGNAINKDLKA 222 (316)
Q Consensus 194 ~~rs~~~l~~I~~~Y~~~~g~~L~~~I~~ 222 (316)
.+|.|.++.+.-.++...|++++-+.|.+
T Consensus 18 LsR~P~~l~~fe~~a~~~y~kT~p~rVek 46 (65)
T PF14003_consen 18 LSRNPEELEAFEKEAKHFYKKTIPHRVEK 46 (65)
T ss_pred HccCHHHHHHHHHHHHHHHhccccHHHHH
Confidence 45899999999999999999999998875
No 14
>PRK10969 DNA polymerase III subunit theta; Reviewed
Probab=36.90 E-value=79 Score=22.62 Aligned_cols=36 Identities=11% Similarity=0.268 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhhcCcc-HHHHHhhcCcHHHHHHHH
Q 021204 273 EVDMQRIKEEYHRRNTVT-LEKAIAGDTSGDYERMLL 308 (316)
Q Consensus 273 ~~~l~~i~~~Y~~~yg~~-L~~~I~~~~sg~~~~~ll 308 (316)
..||.+-..+|+++|+++ +.+.|+.+...+++.++-
T Consensus 17 nvDLaASgVafkER~n~pvi~e~ve~eqPe~lR~yFr 53 (75)
T PRK10969 17 NVDLAASGVAFKERYNMPVIAEAVEREQPEHLRSYFR 53 (75)
T ss_pred HHHHHHHHHHHHHHcCCcccHHHHHHhCCHHHHHHHH
Confidence 367888888899999998 567788889988887764
No 15
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=35.94 E-value=1e+02 Score=18.63 Aligned_cols=36 Identities=28% Similarity=0.268 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhhcCC-CCHHHHHHHhcCCCHHHHHHH
Q 021204 14 AEDAEQLHKAFQGWG-TNEALIISVLAHRNAAQRKLI 49 (316)
Q Consensus 14 ~~da~~L~~A~~g~g-~de~~li~il~~rs~~q~~~i 49 (316)
..+-..|.+++...| .+=..|.+.+.+||+.|...-
T Consensus 6 ~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~ 42 (49)
T smart00717 6 EEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRER 42 (49)
T ss_pred HHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHH
Confidence 344557888888888 777888899999999987643
No 16
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=35.34 E-value=57 Score=25.46 Aligned_cols=49 Identities=12% Similarity=0.222 Sum_probs=37.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCchHHHhccCC--------CchHHHHHHHHH
Q 021204 188 ELIRILTTRSKAQINATLNHYNDTFGNAINKDLKADP--------NDEYLKLLRAAI 236 (316)
Q Consensus 188 ~li~il~~rs~~~l~~I~~~Y~~~~g~~L~~~I~~~~--------sg~~~~~Ll~l~ 236 (316)
...+.|.++||.-+.-..+.+.+-.+.+|.+.+..++ .|||.++..+++
T Consensus 35 ~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~L 91 (118)
T PF13766_consen 35 KTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRALL 91 (118)
T ss_dssp HHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHHT
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3446677789999999999999988899999887653 677777777665
No 17
>TIGR03031 cas_csx12 CRISPR-associated protein, Csx12 family. Members of this family of CRISPR-associated (cas) protein are found, so far, in CRISPR/cas loci in Wolinella succinogenes DSM 1740, Legionella pneumophila str. Paris, and Francisella tularensis, where the last probably is an example of a degenerate CRISPR locus, having neither repeats nor a functional Cas1. The characteristic repeat length is 37 base pairs and period is about 72. One region of this large protein shows sequence similarity to PFAM model pfam01844, HNH endonuclease.
Probab=31.97 E-value=1.1e+02 Score=30.86 Aligned_cols=55 Identities=15% Similarity=0.222 Sum_probs=43.7
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHhhhhhcccHHHHhhhhcchhHHHHHHHhcCC
Q 021204 29 TNEALIISVLAHRNAAQRKLIREIYNETYGEDLLKALDKELSSDFERSVLLWTLT 83 (316)
Q Consensus 29 ~de~~li~il~~rs~~q~~~i~~~Y~~~~g~~L~~~i~~~~sg~~~~~l~~l~~~ 83 (316)
..-..+..++++.||-|+..+++.|.+.-...-....+..+...|.+++..|-.+
T Consensus 237 l~~~~l~nLvGnlSN~qlk~LrrYfnDk~~~k~d~wdeqkf~~~~~r~v~~wrh~ 291 (802)
T TIGR03031 237 LPSVCLSNLLGNLSNLQLKNLRRYFNDKIHKKPDQWDEQKFGNEFLRMLKNWRHL 291 (802)
T ss_pred CchhhHHHHhhhhhhhhHHHHHHHhccccccccccccHhHHHHHHHHHHHhccCc
Confidence 3345789999999999999999999987666666677777777888888877433
No 18
>TIGR02923 AhaC ATP synthase A1, C subunit. The A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The C subunit is part of the hydrophilic A1 "stalk" complex (AhaABCDEFG) which is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex.
Probab=30.75 E-value=4.2e+02 Score=24.25 Aligned_cols=103 Identities=17% Similarity=0.099 Sum_probs=52.2
Q ss_pred HhhhcCCCCHHHHHHHhcCCCHHHHHHHHHHhhhhhcccHHHHhhhh-cchhHHHHHHHhcCCCcHHHHHHHHHHhcCCC
Q 021204 22 KAFQGWGTNEALIISVLAHRNAAQRKLIREIYNETYGEDLLKALDKE-LSSDFERSVLLWTLTPAERDAYLANEATKRFT 100 (316)
Q Consensus 22 ~A~~g~g~de~~li~il~~rs~~q~~~i~~~Y~~~~g~~L~~~i~~~-~sg~~~~~l~~l~~~~~~~da~~l~~A~kg~g 100 (316)
+|+++.=.+.+.+-+++...|.+++...-+. ..|+..|.+..... -.+.++.+|-..+ ...-..+.+...+
T Consensus 13 r~~~~~lL~~~~~~~L~~~~s~~e~~~~L~~--t~Y~~~l~~~~~~~~~~~~iE~~L~~~l----~~~~~~l~~~~~~-- 84 (343)
T TIGR02923 13 RAMESRLLKEEDFNELLEMRGTDEIVRFLEE--TDYKKELDELGSKSYGVDLIEHALDANL----AKTYEKLFRISPG-- 84 (343)
T ss_pred HHHHHhcCCHHHHHHHHhCCCHHHHHHHhcC--CChHHHHHHhhhccCCHHHHHHHHHHHH----HHHHHHHHHhCch--
Confidence 4555544567778888888887766544443 45555554433211 1123333322211 1111222222222
Q ss_pred CChHHHHHHHhcCCHHHHHHHHHHHHHhc-cccHHH
Q 021204 101 LSNWVLMEIACTRSSRDLFAAKQAYHARY-KKSLEE 135 (316)
Q Consensus 101 tde~~li~il~~rs~~~l~~i~~~Y~~~~-~~~L~~ 135 (316)
....++..+.. ..++..|+..++..+ |.+.+.
T Consensus 85 -~~~~~~~~~~~--~~di~Nik~ilR~~~~g~~~~~ 117 (343)
T TIGR02923 85 -ASRDLIRLYLK--KWDVWNIKTLIRAKYANASAEE 117 (343)
T ss_pred -hHHHHHHHHHH--HHhHHHHHHHHHHHHcCCCHHH
Confidence 22345555554 379999999998765 555444
No 19
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=30.14 E-value=1.2e+02 Score=17.87 Aligned_cols=35 Identities=29% Similarity=0.312 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhhcCC-CCHHHHHHHhcCCCHHHHHH
Q 021204 14 AEDAEQLHKAFQGWG-TNEALIISVLAHRNAAQRKL 48 (316)
Q Consensus 14 ~~da~~L~~A~~g~g-~de~~li~il~~rs~~q~~~ 48 (316)
..+-..|.+++...| .+=..|.+.+.+||..|+..
T Consensus 4 ~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~ 39 (45)
T cd00167 4 EEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRE 39 (45)
T ss_pred HHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHH
Confidence 345667788888888 67788889999999987754
No 20
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=29.57 E-value=3.8e+02 Score=27.04 Aligned_cols=52 Identities=10% Similarity=0.054 Sum_probs=36.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccccHHHHHhhcccchhh-hhHHHhhhccc
Q 021204 105 VLMEIACTRSSRDLFAAKQAYHARYKKSLEEDVAYHTSGDFR-KLLVPLVSTFR 157 (316)
Q Consensus 105 ~li~il~~rs~~~l~~i~~~Y~~~~~~~L~~~I~~~~sg~~~-~lll~ll~~~r 157 (316)
.+-+.+....|+++. |...|...|.+-|..-+..+.+.... -.+|+++.-.|
T Consensus 295 ~i~e~i~~~~pp~~N-I~~~y~~~YqecL~~L~td~v~~~~~a~~iL~ii~f~~ 347 (742)
T COG5173 295 FIRENISLSFPPFDN-ILTLYHNNYQECLLKLFTDEVTERLDAGEILAIIEFVG 347 (742)
T ss_pred HHHHHccccCCchHH-HHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Confidence 444667777777765 88999999999888888887654433 34566666544
No 21
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=28.34 E-value=86 Score=22.81 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHHHhhhhhccc
Q 021204 40 HRNAAQRKLIREIYNETYGED 60 (316)
Q Consensus 40 ~rs~~q~~~i~~~Y~~~~g~~ 60 (316)
+.|++++..|+++|+..|...
T Consensus 27 Gfs~~~i~~l~~ayr~l~~~~ 47 (83)
T PF13720_consen 27 GFSKEEISALRRAYRILFRSG 47 (83)
T ss_dssp TS-HHHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHHHHHhCC
Confidence 358899999999999998543
No 22
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=26.81 E-value=2.3e+02 Score=23.87 Aligned_cols=53 Identities=28% Similarity=0.263 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHhcCCCHHHHHHHHHHhhhhh---cccHHHHhhh
Q 021204 11 PSAAEDAEQLHKAFQGWGTNEALIISVLAHRNAAQRKLIREIYNETY---GEDLLKALDK 67 (316)
Q Consensus 11 ~~~~~da~~L~~A~~g~g~de~~li~il~~rs~~q~~~i~~~Y~~~~---g~~L~~~i~~ 67 (316)
-+|..-|+-|+.. -|.|...|-+.|+...+ --..+..+|-..+ |.++.+.|+.
T Consensus 32 ~~~~~iA~fl~~~---~~l~k~~ig~~L~~~~~-~~~~vL~~y~~~f~f~~~~i~~ALR~ 87 (185)
T cd00171 32 DSPKEIAKFLYET---EGLNKKAIGEYLGENNE-FNSLVLHEFVDLFDFSGLRLDEALRK 87 (185)
T ss_pred CCHHHHHHHHHhC---CCCCHHHHHHHHcCCch-HHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 3678888888876 46899999999999874 5577888888876 6777777664
No 23
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.26 E-value=1.7e+02 Score=25.27 Aligned_cols=66 Identities=14% Similarity=0.203 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHHhccccHHHHHhhcccchhhhhHHHhhhcccccccccC-hhhHHHHHHHHHhccc
Q 021204 114 SSRDLFAAKQAYHARYKKSLEEDVAYHTSGDFRKLLVPLVSTFRYDGGDVN-MMLARTEAKILRDKIS 180 (316)
Q Consensus 114 s~~~l~~i~~~Y~~~~~~~L~~~I~~~~sg~~~~lll~ll~~~r~~~~~vd-~~~~~~da~~L~~A~~ 180 (316)
+-.-+..|++.|.+.||.....++...+...|-..|..-+...-+++. +| ...+...+.+++..|-
T Consensus 76 pfaFLe~Ik~~F~k~YG~~a~ta~AysmN~EFs~vL~qqm~y~s~~p~-id~lskvkaqv~evk~vM~ 142 (217)
T KOG0859|consen 76 PFAFLERIKEDFKKRYGGGAHTAVAYSMNKEFSSVLKQQMQYCSEHPE-ISKLAKVKAQVTEVKGVMM 142 (217)
T ss_pred cHHHHHHHHHHHHHHhccchhHHHHhHhHHHHHHHHHHHHHHHHcCcc-hhHHHHHHHHHHHHHHHHH
Confidence 456899999999999999988888887777777776666654433332 33 2334444555544443
No 24
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=24.02 E-value=4.9e+02 Score=22.75 Aligned_cols=81 Identities=16% Similarity=0.081 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHhh-hcCCCCHHHHHHHhcCCCHHHHHHHHHHhhhhhcccHHHHhhhh---cchhHHHHHHHhcCCC-
Q 021204 10 TPSAAEDAEQLHKAF-QGWGTNEALIISVLAHRNAAQRKLIREIYNETYGEDLLKALDKE---LSSDFERSVLLWTLTP- 84 (316)
Q Consensus 10 ~~~~~~da~~L~~A~-~g~g~de~~li~il~~rs~~q~~~i~~~Y~~~~g~~L~~~i~~~---~sg~~~~~l~~l~~~~- 84 (316)
+|+|+.|-..|.+|+ +..|-|+..+- .+-..+....+.....+|...+... -.+.+...+.....+|
T Consensus 61 GY~p~~~~~~If~Alc~a~~~dp~~~r--------~dA~~l~~~a~~~s~~~l~~~l~~~~~~~~~~l~~~~~~ia~~~~ 132 (216)
T PF11264_consen 61 GYPPEEDKDSIFNALCQALGFDPEQYR--------QDAEKLEEWAKGKSIEDLLSWLSQKGGEGDNPLAAILQAIASNPK 132 (216)
T ss_pred CCCChhHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHcCCHHHHHHHHhccccccchHHHHHHHHHhcCCC
Confidence 466777777777766 33555554442 1222333334445556666666543 2223444444444443
Q ss_pred ---cHHHHHHHHHHhcC
Q 021204 85 ---AERDAYLANEATKR 98 (316)
Q Consensus 85 ---~~~da~~l~~A~kg 98 (316)
....|--|+..+..
T Consensus 133 f~YSRl~AIGL~~LLe~ 149 (216)
T PF11264_consen 133 FKYSRLFAIGLFRLLEL 149 (216)
T ss_pred CchHHHHHHHHHHHHHh
Confidence 34456666666654
No 25
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=22.94 E-value=1.4e+02 Score=19.69 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=23.5
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHhcCCCHHHHHHHHHHhhh
Q 021204 15 EDAEQLHKAFQGWGTNEALIISVLAHRNAAQRKLIREIYNE 55 (316)
Q Consensus 15 ~da~~L~~A~~g~g~de~~li~il~~rs~~q~~~i~~~Y~~ 55 (316)
.+-+.|....+..|.+=..|.+.|.+||+.|. +..|..
T Consensus 4 eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~---~~r~~~ 41 (60)
T PF13921_consen 4 EEDELLLELVKKYGNDWKKIAEHLGNRTPKQC---RNRWRN 41 (60)
T ss_dssp HHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHH---HHHHHH
Confidence 44556677776666666778888866888654 444554
No 26
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.87 E-value=5.7e+02 Score=26.46 Aligned_cols=208 Identities=11% Similarity=0.038 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHhcCCCCChHHHHHHHhcCCHHHHHHHHHHHHHhccccHHHHHhh-cccchhhhhHHHhhhccccccccc
Q 021204 85 AERDAYLANEATKRFTLSNWVLMEIACTRSSRDLFAAKQAYHARYKKSLEEDVAY-HTSGDFRKLLVPLVSTFRYDGGDV 163 (316)
Q Consensus 85 ~~~da~~l~~A~kg~gtde~~li~il~~rs~~~l~~i~~~Y~~~~~~~L~~~I~~-~~sg~~~~lll~ll~~~r~~~~~v 163 (316)
.....+.++..+.- |-..+.+.+..+.|+++. |..+|-..|...|.+.+.. .......+-.+.++.-
T Consensus 235 ~~~~~e~~r~~i~E---dL~~~~~~l~~cfpp~~~-if~~~l~~Yh~~ls~ll~dl~s~~l~~~eil~llaw-------- 302 (667)
T KOG2286|consen 235 QVRLLEVLRFVIRE---DLRVAKRVLVPCFPPHYN-IFSAYLELYHQALSDLLRDLASEALELREILQLLAW-------- 302 (667)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHhhcccCCchhH-HHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH--------
Q ss_pred ChhhHHHHHHHHHhcccCCCCChHHHHHHHhcCCHHHHHHHHHHHHhccCCchHHHhccCCCchHHHHHHHHH-------
Q 021204 164 NMMLARTEAKILRDKISDKDYAHEELIRILTTRSKAQINATLNHYNDTFGNAINKDLKADPNDEYLKLLRAAI------- 236 (316)
Q Consensus 164 d~~~~~~da~~L~~A~~g~gtde~~li~il~~rs~~~l~~I~~~Y~~~~g~~L~~~I~~~~sg~~~~~Ll~l~------- 236 (316)
+.. ..++-... .+-.+..++=....+.|+.++.+.|-......+.+.+.+-++-+.....-..-
T Consensus 303 ----V~~---~~~~~~l~--~~~~~~~~l~p~l~~~~v~~Ll~~Y~~~~t~n~~ewl~~~~e~e~~~~~~~~~P~rd~~g 373 (667)
T KOG2286|consen 303 ----VRN---EYYTPLLQ--LNVDVLRALGPLLRPKHVVALLDLYLERATANMKEWLMNALELEAAAWAKETEPPRDEEG 373 (667)
T ss_pred ----HHH---HhcChhhh--ccchhhhhhcCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccc
Q ss_pred HhcCCChHHHHHHHHHHhccCCCCchhHHHHHHhcCHHHHHHHHHHHHhhcCccHHHHHhhcCcHHHHHHHHHhhcCC
Q 021204 237 KCLTYPEKHFAKVLRLAINGLGTDEWGLTRVVTTRAEVDMQRIKEEYHRRNTVTLEKAIAGDTSGDYERMLLALIGHG 314 (316)
Q Consensus 237 ~~~~~~~~~~A~~L~~a~~g~gtd~~~liril~~r~~~~l~~i~~~Y~~~yg~~L~~~I~~~~sg~~~~~ll~l~~~~ 314 (316)
.+..+-|.-+.+.+-..+...-.....+.-.+.--+-.++....+-|.+.+....+.. +.+.++.|..+++|.+...
T Consensus 374 ~~~t~~p~~~fqmi~q~l~~~~~~~~Dl~~~~~~~~~~~v~~f~~~~~~~~~~~~e~~-~~~~~~~l~~y~iA~~N~~ 450 (667)
T KOG2286|consen 374 YLYTPGPVIFFQMITQQLQVAAATSSDLSGKILRSLLSEVPSFARNYPKAQDEDQESH-RREQPEGLREYLIANINNN 450 (667)
T ss_pred cccCcccHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHhc-hhcccccHHHHHHHHHhch
No 27
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=22.17 E-value=2.4e+02 Score=26.11 Aligned_cols=32 Identities=6% Similarity=0.003 Sum_probs=23.8
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHhhhhhcc
Q 021204 28 GTNEALIISVLAHRNAAQRKLIREIYNETYGE 59 (316)
Q Consensus 28 g~de~~li~il~~rs~~q~~~i~~~Y~~~~g~ 59 (316)
-||-+.+-.+=.+...+|+++|.+.++..|++
T Consensus 19 TTDF~~m~~~d~s~~~~e~~A~l~E~r~DyNr 50 (337)
T TIGR02029 19 TTDFEEMANLDVSPVENEWDAMLAEMKADYNR 50 (337)
T ss_pred cccHHHHHhcCCchhHHHHHHHHHHHHhCccc
Confidence 35666666666677788899998888887764
No 28
>PF08748 DUF1789: Domain of unknown function (DUF1789); InterPro: IPR014859 This entry represents a putative uncharacterised protein found in phage-related conserved hypothetical protein from Bordetella.
Probab=22.13 E-value=1.4e+02 Score=23.87 Aligned_cols=45 Identities=13% Similarity=0.272 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcccCCCCCh---HHHHHHHhcCCHHHHHHHHHHHHhcc
Q 021204 168 ARTEAKILRDKISDKDYAH---EELIRILTTRSKAQINATLNHYNDTF 212 (316)
Q Consensus 168 ~~~da~~L~~A~~g~gtde---~~li~il~~rs~~~l~~I~~~Y~~~~ 212 (316)
+..+++.+.+-+.||+.|+ ..=+..|+..-|.=-.+|.++|.+.+
T Consensus 74 ~~~~ad~i~~iv~gW~ld~~fn~Enl~~L~~~yp~a~~AI~~aY~~~l 121 (128)
T PF08748_consen 74 VDLNADFILEIVAGWDLDEEFNDENLELLVDNYPGAAEAIVDAYYQAL 121 (128)
T ss_pred hhhhHHHHHHHHhccCCCCccCHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 5668999999999998774 34455666667888889999988754
No 29
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=22.05 E-value=2.3e+02 Score=26.51 Aligned_cols=32 Identities=16% Similarity=0.095 Sum_probs=26.5
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHhhhhhcc
Q 021204 28 GTNEALIISVLAHRNAAQRKLIREIYNETYGE 59 (316)
Q Consensus 28 g~de~~li~il~~rs~~q~~~i~~~Y~~~~g~ 59 (316)
-||-+.+-.+=.+...+|+.+|.+.++..|++
T Consensus 29 TTDF~~m~~~d~s~~~~e~~A~l~E~r~DyNr 60 (355)
T PRK13654 29 TTDFDAMAKLDLSPNREELDAILEEMRADYNR 60 (355)
T ss_pred cccHHHHHhcCCchhHHHHHHHHHHHHhCccc
Confidence 46778888888888889999999999987764
No 30
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=21.85 E-value=2.5e+02 Score=26.18 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=25.4
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHhhhhhcc
Q 021204 28 GTNEALIISVLAHRNAAQRKLIREIYNETYGE 59 (316)
Q Consensus 28 g~de~~li~il~~rs~~q~~~i~~~Y~~~~g~ 59 (316)
-||-+.+-.+=.+...+|+++|.+.++..|++
T Consensus 25 TTDF~~m~~~dis~~~~e~~A~l~E~r~DyNr 56 (351)
T CHL00185 25 TTDFDEMANYDISSNIEEIEAILEEFRADYNQ 56 (351)
T ss_pred cccHHHHHhcCCchhHHHHHHHHHHHHhCccc
Confidence 46777777777778889999999998887764
No 31
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=21.80 E-value=2.5e+02 Score=25.85 Aligned_cols=31 Identities=10% Similarity=0.150 Sum_probs=21.2
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHhhhhhcc
Q 021204 29 TNEALIISVLAHRNAAQRKLIREIYNETYGE 59 (316)
Q Consensus 29 ~de~~li~il~~rs~~q~~~i~~~Y~~~~g~ 59 (316)
||-+.+-.+=.+...+|++++.+.++..|++
T Consensus 10 TDF~~m~~~dis~~~~e~~A~l~E~r~DyNr 40 (323)
T cd01047 10 TDFDEMAALDISKNREEFEAMLAEFKADYNR 40 (323)
T ss_pred ccHHHHHhcCCchhHHHHHHHHHHHHhCccc
Confidence 4555555555556678888888888877664
No 32
>COG4800 Predicted transcriptional regulator with an HTH domain [Transcription]
Probab=20.98 E-value=1.8e+02 Score=23.56 Aligned_cols=68 Identities=18% Similarity=0.160 Sum_probs=42.7
Q ss_pred HHHhcccCCCCChHHHHHHHhc-CCHH---------------HHHHHHHHHHhccCCchHHHhccCCCchHHHHHHHHHH
Q 021204 174 ILRDKISDKDYAHEELIRILTT-RSKA---------------QINATLNHYNDTFGNAINKDLKADPNDEYLKLLRAAIK 237 (316)
Q Consensus 174 ~L~~A~~g~gtde~~li~il~~-rs~~---------------~l~~I~~~Y~~~~g~~L~~~I~~~~sg~~~~~Ll~l~~ 237 (316)
.||+-++|..++-+++++|+-+ ||.. -|..|...=+...|++. .|+...-..+++++.+.++
T Consensus 45 tLYKil~G~dpr~~tl~~I~ktir~~ek~en~~fiA~IAAR~vL~~i~~~kk~i~gk~~--~ireYpa~slEeaIvAaVr 122 (170)
T COG4800 45 TLYKILKGSDPRYDTLTRIFKTIRSYEKKENIGFIALIAARYVLEEIKFGKKGINGKSY--LIREYPASSLEEAIVAAVR 122 (170)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHHHhccCCCeeeeeehHHHHHHHHhhhccccCcee--EEEecccccHHHHHHHHHH
Confidence 4677777766777888888764 3322 23444444444455554 3444445678999999998
Q ss_pred hcCCCh
Q 021204 238 CLTYPE 243 (316)
Q Consensus 238 ~~~~~~ 243 (316)
..+|.+
T Consensus 123 AErdGa 128 (170)
T COG4800 123 AERDGA 128 (170)
T ss_pred hhhccc
Confidence 887753
No 33
>PF01992 vATP-synt_AC39: ATP synthase (C/AC39) subunit; InterPro: IPR002843 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit C from the A0 complex of A-ATPases, and subunits C and D from the V0 complex of V-ATPases, all of which are involved in the translocation of protons across a membrane. There is more than one type of D subunit in V-ATPases, where the D1 subunit is ubiquitous, while the D2 subunit has limited tissue expressivity, possibly to account for differential functions, targeting or regulation of V-ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 1R5Z_A 1V9M_A 3J0J_M.
Probab=20.26 E-value=3.2e+02 Score=24.93 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHhcCHHHHHHHHHHHHh-hcCccHHH
Q 021204 244 KHFAKVLRLAINGLGTDEWGLTRVVTTRAEVDMQRIKEEYHR-RNTVTLEK 293 (316)
Q Consensus 244 ~~~A~~L~~a~~g~gtd~~~liril~~r~~~~l~~i~~~Y~~-~yg~~L~~ 293 (316)
.++.+.+..+.+-.|.+...+.+++. .++|+.+|.-.|.- .||.+-+.
T Consensus 172 ~yy~~~~~~~~~~~~~~~~~l~~~~~--~~iD~~Ni~~~~R~k~~~~~~~~ 220 (337)
T PF01992_consen 172 RYYEDLLKAAKKLSGSEREILRELLG--MEIDLTNIKTILRAKKYGLSPEE 220 (337)
T ss_dssp HHHHHHHHHHH---TSS-HHHHHHHH--HHHHHHHHHHHHHTTTS---GGG
T ss_pred HHHHHHHHHhhccccchHHHHHHHHH--HHHHHHHHHHHHHHhhcCCCHhh
Confidence 35566666666333455565557776 45799999999985 37766443
Done!