BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021206
         (316 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2BVJ|A Chain A, Ligand-Free Structure Of Cytochrome P450 Pikc (Cyp107l1)
 pdb|2BVJ|B Chain B, Ligand-Free Structure Of Cytochrome P450 Pikc (Cyp107l1)
 pdb|2C6H|A Chain A, Crystal Structure Of Yc-17-Bound Cytochrome P450 Pikc
           (Cyp107l1)
 pdb|2C6H|B Chain B, Crystal Structure Of Yc-17-Bound Cytochrome P450 Pikc
           (Cyp107l1)
 pdb|2C7X|A Chain A, Crystal Structure Of Narbomycin-Bound Cytochrome P450 Pikc
           (Cyp107l1)
 pdb|2CA0|A Chain A, Crystal Structure Of Yc-17-Bound Cytochrome P450 Pikc
           (Cyp107l1)
 pdb|2CA0|B Chain B, Crystal Structure Of Yc-17-Bound Cytochrome P450 Pikc
           (Cyp107l1)
 pdb|2CD8|A Chain A, Crystal Structure Of Yc-17-Bound Cytochrome P450 Pikc
           (Cyp107l1)
 pdb|2CD8|B Chain B, Crystal Structure Of Yc-17-Bound Cytochrome P450 Pikc
           (Cyp107l1)
          Length = 436

 Score = 29.3 bits (64), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 169 EKFPTLESYHVE---YDTKVNEADELMNAVGSDEECRVVTDPRFSK 211
           + +PT      E   +  +  E DE+   VG D    V+ DPRFSK
Sbjct: 47  DPYPTYARLRAEGPAHRVRTPEGDEVWLVVGYDRARAVLADPRFSK 92


>pdb|1G8K|A Chain A, Crystal Structure Analysis Of Arsenite Oxidase From
           Alcaligenes Faecalis
 pdb|1G8K|C Chain C, Crystal Structure Analysis Of Arsenite Oxidase From
           Alcaligenes Faecalis
 pdb|1G8K|E Chain E, Crystal Structure Analysis Of Arsenite Oxidase From
           Alcaligenes Faecalis
 pdb|1G8K|G Chain G, Crystal Structure Analysis Of Arsenite Oxidase From
           Alcaligenes Faecalis
          Length = 825

 Score = 27.7 bits (60), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 131 CNFLVFGLGYDSLMWSALNHGGR 153
           C+F + G GY    W  L  GGR
Sbjct: 21  CHFCIVGCGYHVYKWPELEEGGR 43


>pdb|1G8J|A Chain A, Crystal Structure Analysis Of Arsenite Oxidase From
           Alcaligenes Faecalis
 pdb|1G8J|C Chain C, Crystal Structure Analysis Of Arsenite Oxidase From
           Alcaligenes Faecalis
          Length = 825

 Score = 27.7 bits (60), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 131 CNFLVFGLGYDSLMWSALNHGGR 153
           C+F + G GY    W  L  GGR
Sbjct: 21  CHFCIVGCGYHVYKWPELEEGGR 43


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,650,859
Number of Sequences: 62578
Number of extensions: 284444
Number of successful extensions: 822
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 819
Number of HSP's gapped (non-prelim): 5
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)