BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021206
(316 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LQ32|GXM3_ARATH Glucuronoxylan 4-O-methyltransferase 3 OS=Arabidopsis thaliana
GN=GXM3 PE=1 SV=1
Length = 297
Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust.
Identities = 168/252 (66%), Positives = 205/252 (81%), Gaps = 9/252 (3%)
Query: 64 QDQAETNNSPNTNCPTTTPPSPLTETCTKTPPSLANALVHYATTNITPQQTVKEISVSLR 123
Q++ ET + CPTT + CTK P SL++ALVHY T+N+TPQQT E+SVS R
Sbjct: 48 QEEEETQHK-QEGCPTT-------QQCTKMPLSLSDALVHYVTSNVTPQQTFDEVSVSKR 99
Query: 124 VLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPTLESYHVEYDT 183
VL +KSPCNFLVFGLG+DSLMW++LNHGGRTLF+EED++WI + +KFP LESYHV YDT
Sbjct: 100 VLDKKSPCNFLVFGLGHDSLMWASLNHGGRTLFIEEDQAWIAIVTKKFPNLESYHVVYDT 159
Query: 184 KVNEADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAA 243
KV ++D+LM +G EECR V+DPR SKC LALK FP++ Y+ +WDLIMVDAPTGYHE A
Sbjct: 160 KVKDSDKLME-LGRSEECRSVSDPRNSKCDLALKDFPADFYETKWDLIMVDAPTGYHEEA 218
Query: 244 PGRMTAIYTAGLMARNRESGETDVFVHDVDRVVEDKFSKAFLCEGYLKEQEGRIRHFVVP 303
PGRM+AIYTAGL+ARNRE GETDVFVHDV+R VED+FS FLC+GY++EQ GR+RHF +P
Sbjct: 219 PGRMSAIYTAGLLARNREDGETDVFVHDVNRPVEDEFSATFLCKGYMREQNGRLRHFTIP 278
Query: 304 SHRTRSARPFCP 315
SHR R+ RPFCP
Sbjct: 279 SHRARAGRPFCP 290
>sp|Q9T0F7|GXM2_ARATH Glucuronoxylan 4-O-methyltransferase 2 OS=Arabidopsis thaliana
GN=GXM2 PE=1 SV=1
Length = 290
Score = 364 bits (934), Expect = e-100, Method: Compositional matrix adjust.
Identities = 176/318 (55%), Positives = 233/318 (73%), Gaps = 36/318 (11%)
Query: 1 MRPKPQSPMNIKLILLC-AFFLLLLLFITKSTFSSSSSSSSSSSQLQNPLSTNSTETPDD 59
MR K QS ++ KLI +C + +L +LF+ +++FSS+S+++
Sbjct: 1 MRNKSQSFISSKLIFICCSILVLFILFLKRASFSSNSTAT-------------------- 40
Query: 60 NIQIQDQAETNNSPNTNCPTTTPPSPLTETCTKTPPSLANALVHYATTNITPQQTVKEIS 119
I+D+ + CP+T + CTK P SL++ALVHY T+ ITPQQT E+S
Sbjct: 41 ---IRDEYHQK----SKCPSTP------QQCTKLPTSLSDALVHYVTSEITPQQTFDEVS 87
Query: 120 VSLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPTLESYHV 179
VS RVL +KSPCNFLVFGLG+DSLMW++LNHGGRTLFLEED++WI + +KFP LESYHV
Sbjct: 88 VSKRVLDKKSPCNFLVFGLGHDSLMWASLNHGGRTLFLEEDEAWIETVTKKFPNLESYHV 147
Query: 180 EYDTKVNEADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGY 239
YDTKV ++++LM + E+C+ V+DPR SKC L+LKGFP++VY+ +WD+IMVDAPTGY
Sbjct: 148 VYDTKVKDSNKLME-LKRTEDCKAVSDPRDSKCALSLKGFPADVYETQWDVIMVDAPTGY 206
Query: 240 HEAAPGRMTAIYTAGLMARNR-ESGETDVFVHDVDRVVEDKFSKAFLCEGYLKEQEGRIR 298
H+ APGRM+AIYTAGL+ARNR + GETDVFVHD++R VED+FS AFLC GY+KEQ+GR+R
Sbjct: 207 HDEAPGRMSAIYTAGLLARNRYDGGETDVFVHDINRPVEDEFSVAFLCGGYMKEQQGRLR 266
Query: 299 HFVVPSHRTRSARPFCPS 316
HF +PSHR PFCP+
Sbjct: 267 HFNIPSHRASFGTPFCPA 284
>sp|Q6NMK1|GXM1_ARATH Glucuronoxylan 4-O-methyltransferase 1 OS=Arabidopsis thaliana
GN=GXM1 PE=1 SV=1
Length = 282
Score = 362 bits (930), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 181/320 (56%), Positives = 226/320 (70%), Gaps = 43/320 (13%)
Query: 1 MRPKPQSPMNIKLILLCAFFLLLLLFITKSTFSSSSSSSSSSSQLQNPLSTNSTETPDDN 60
MRPK +K++L+ L+L+FI +ST +SS + Q P T ST
Sbjct: 1 MRPKANQNHKLKVLLVFLLATLILIFIVRSTLTSSQ-------EHQTPQETRSTRC---- 49
Query: 61 IQIQDQAETNNSPNTNCPTTTPPSPLTETCTKTPPSLANALVHYATTNITPQQTVKEISV 120
+ C K P SLA AL+HY+T+ ITPQQT+KEI+V
Sbjct: 50 --------------------------SGACNKLPRSLAQALIHYSTSVITPQQTLKEIAV 83
Query: 121 SLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPTLESYHVE 180
S RVL +KSPCNFLVFGLG+DSLMWS+LN+GGRT+FLEED++WI QIK +FP LESYHV
Sbjct: 84 SSRVLGKKSPCNFLVFGLGHDSLMWSSLNYGGRTVFLEEDEAWIKQIKRRFPMLESYHVT 143
Query: 181 YDTKVNEADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYH 240
YD+KVN+AD L+ VG EC + DPR+S C+LALKG P+E+Y+ WDLIMVDAPTGY+
Sbjct: 144 YDSKVNQADNLIE-VGKGPECTAIGDPRYSMCQLALKGLPAEIYETGWDLIMVDAPTGYY 202
Query: 241 EAAPGRMTAIYTAGLMARNR-ESGETDVFVHDVDRVVEDKFSKAFLCEGYLKEQEGRIRH 299
+ APGRMTAIYTAG+MARNR + GETDVFVHDV+R +EDKFSKAFLCEGY+K+QEGR+RH
Sbjct: 203 DEAPGRMTAIYTAGMMARNRKQGGETDVFVHDVNREIEDKFSKAFLCEGYMKKQEGRLRH 262
Query: 300 FVVPSHR----TRSARPFCP 315
F++PS+R + S RPFCP
Sbjct: 263 FIIPSYRDGSESESNRPFCP 282
>sp|Q9FH92|IX15L_ARATH Protein IRX15-LIKE OS=Arabidopsis thaliana GN=IRX15-L PE=2 SV=1
Length = 317
Score = 180 bits (456), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 112/327 (34%), Positives = 171/327 (52%), Gaps = 50/327 (15%)
Query: 1 MRPKPQSPMNIKLILLCAF-------FLLLLLFITKSTFSSSSSSSSSSSQLQNPLSTNS 53
+ P Q + + L AF FLL LL+ T S SS ++S++ SS + + ++T
Sbjct: 14 VHPYIQKQTSTNRLWLLAFVSFFTIAFLLTLLYTTDSIISSKNNSATVSSAVNSAVTT-- 71
Query: 54 TETPDDNIQIQDQAETNNSPNTNCPTTTPPSPLTETCTKTPPSLANALVHYAT-TNITPQ 112
T ++ P + NA++HYA+ +N +
Sbjct: 72 ----------------------------------ATISQLPTTAINAMLHYASRSNDSYH 97
Query: 113 QTVKEISVSLRVLAQKSP-CNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKF 171
+ E+ VL + SP CN LVFGL +++L+W +LNH GRT+F+EE++ + +E
Sbjct: 98 MSYGEMKSISDVLRRCSPPCNLLVFGLTHETLLWKSLNHNGRTVFIEENRYYAAYFEEIH 157
Query: 172 PTLESYHVEYDTKVNEADELMNAV--GSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWD 229
P +E + V+Y TK EA EL++AV + ECR V + FS C+L L P+ VYDV+WD
Sbjct: 158 PEIEVFDVQYTTKAREARELVSAVKEAARNECRPVQNLLFSDCKLGLNDLPNHVYDVDWD 217
Query: 230 LIMVDAPTGYHEAAPGRMTAIYTAGLMARNRESG--ETDVFVHDVDRVVEDKFSKAFLCE 287
+I+VD P G PGRM++I+TA ++AR+++ G +T VFVHD R VE FLC
Sbjct: 218 VILVDGPRGDGGDVPGRMSSIFTAAVLARSKKGGNPKTHVFVHDYYRDVERLCGDEFLCR 277
Query: 288 GYLKEQEGRIRHFVVPSHRTRSARPFC 314
L E + H+V+ S + FC
Sbjct: 278 ENLVESNDLLAHYVLEKMDKNSTQ-FC 303
>sp|Q9SNE5|IRX15_ARATH Protein IRREGULAR XYLEM 15 OS=Arabidopsis thaliana GN=IRX15 PE=2
SV=1
Length = 322
Score = 174 bits (442), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 145/248 (58%), Gaps = 13/248 (5%)
Query: 75 TNCPTTTPPSPLTETCTKTPPSLANALVHYAT-TNITPQQT---VKEISVSLRVLAQKSP 130
T T + SP++ + P S NAL+HYA+ +N + + +K IS LR A P
Sbjct: 68 TGGSTPSASSPISNS--NLPTSAINALLHYASRSNDSFHMSYGEMKSISDVLRRCAP--P 123
Query: 131 CNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADE 190
CN LVFGL +++L+W +LNH GRT+F+EE++ + +E P ++ + V+Y TK +EA E
Sbjct: 124 CNLLVFGLTHETLLWKSLNHNGRTVFIEENRYYAAYFEEIHPEIDVFDVQYTTKAHEAGE 183
Query: 191 LMNAV--GSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMT 248
L+ A + ECR V + FS C+L L P+ VYDV+WD+I VD P G PGRM+
Sbjct: 184 LVTAAKEAAGNECRPVQNLLFSDCKLGLNDLPNHVYDVDWDVIFVDGPRGDAHEGPGRMS 243
Query: 249 AIYTAGLMARNRESG--ETDVFVHDVDRVVEDKFSKAFLCEGYLKEQEGRIRHFVVPSHR 306
+I+TA ++AR+++ G +T VFVHD R VE FLC L E + H+V+
Sbjct: 244 SIFTAAVLARSKKGGTPKTHVFVHDYYRDVERLCGDEFLCRENLVESNDLLAHYVLDKMD 303
Query: 307 TRSARPFC 314
S + FC
Sbjct: 304 KNSTK-FC 310
>sp|Q54CJ8|OCDL_DICDI Uncharacterized cyclodeaminase OS=Dictyostelium discoideum
GN=DDB_G0292894 PE=3 SV=1
Length = 368
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 58 DDNIQIQDQAETNNSPNTNCPTTTPPSPLTETCTKTPPSLANALVHYATTNITPQQTVKE 117
D+++ I+ N+ N PT P T LANA++ T IT +T
Sbjct: 75 DESVGIKIVGTFANNANKGLPTV----PATIILNDIETGLANAVI--GATYITGARTAAG 128
Query: 118 ISVSLRVLAQKSPCNFLVFG 137
++S++ LA +SP VFG
Sbjct: 129 SAISVKYLATESPETIFVFG 148
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,470,261
Number of Sequences: 539616
Number of extensions: 4939316
Number of successful extensions: 39807
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 259
Number of HSP's that attempted gapping in prelim test: 33070
Number of HSP's gapped (non-prelim): 5297
length of query: 316
length of database: 191,569,459
effective HSP length: 117
effective length of query: 199
effective length of database: 128,434,387
effective search space: 25558443013
effective search space used: 25558443013
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)