Query 021206
Match_columns 316
No_of_seqs 93 out of 95
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 08:26:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021206.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021206hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01627 A_thal_3515 uncharac 100.0 1E-121 2E-126 831.7 22.2 223 91-314 1-225 (225)
2 PF04669 Polysacc_synt_4: Poly 100.0 7.6E-87 1.6E-91 593.5 -12.5 184 116-300 1-190 (190)
3 COG0421 SpeE Spermidine syntha 95.8 0.09 2E-06 50.1 10.6 155 116-304 63-235 (282)
4 PLN02823 spermine synthase 94.7 0.29 6.4E-06 47.5 10.5 102 124-257 98-203 (336)
5 TIGR00417 speE spermidine synt 94.5 0.17 3.6E-06 46.6 7.8 51 124-174 67-119 (270)
6 PLN02781 Probable caffeoyl-CoA 94.4 0.28 6E-06 44.6 9.0 118 94-238 29-155 (234)
7 PF01596 Methyltransf_3: O-met 93.7 0.27 5.8E-06 44.6 7.4 120 94-240 7-134 (205)
8 PRK01581 speE spermidine synth 93.5 1 2.2E-05 45.1 11.7 147 126-306 147-314 (374)
9 PLN02476 O-methyltransferase 93.4 0.65 1.4E-05 44.4 9.8 143 94-271 81-233 (278)
10 PRK00811 spermidine synthase; 92.4 1 2.2E-05 42.1 9.5 99 125-257 72-175 (283)
11 PRK03612 spermidine synthase; 92.1 1.2 2.5E-05 45.4 10.1 145 127-306 295-460 (521)
12 PF01564 Spermine_synth: Sperm 91.5 0.53 1.1E-05 43.4 6.3 152 122-306 69-238 (246)
13 PRK04457 spermidine synthase; 88.9 11 0.00023 35.0 12.7 44 128-171 65-110 (262)
14 PLN02366 spermidine synthase 88.7 3.9 8.5E-05 39.3 9.9 147 127-306 89-254 (308)
15 PLN02589 caffeoyl-CoA O-methyl 87.2 4.6 0.0001 37.8 9.2 136 94-263 42-184 (247)
16 cd02042 ParA ParA and ParB of 74.2 4 8.7E-05 31.3 3.3 14 228-241 40-53 (104)
17 PF10718 Ycf34: Hypothetical c 62.5 2.7 5.9E-05 34.1 0.2 33 211-247 40-72 (77)
18 COG0003 ArsA Predicted ATPase 61.6 1.9 4.1E-05 42.1 -1.0 26 214-239 112-138 (322)
19 PF09954 DUF2188: Uncharacteri 57.8 11 0.00023 27.8 2.7 52 226-280 9-60 (62)
20 PF10717 ODV-E18: Occlusion-de 57.7 16 0.00035 30.3 3.9 23 10-32 26-48 (85)
21 PRK11901 hypothetical protein; 55.4 45 0.00098 33.4 7.2 25 13-37 39-63 (327)
22 PRK00377 cbiT cobalt-precorrin 53.9 46 0.001 29.0 6.4 59 112-170 22-84 (198)
23 cd02038 FleN-like FleN is a me 52.1 1.2E+02 0.0026 25.0 8.3 14 228-241 45-58 (139)
24 PRK05703 flhF flagellar biosyn 51.0 77 0.0017 31.9 8.2 24 227-251 299-322 (424)
25 TIGR03018 pepcterm_TyrKin exop 49.4 13 0.00028 32.6 2.3 52 112-163 9-77 (207)
26 PF13659 Methyltransf_26: Meth 48.7 21 0.00047 27.4 3.2 86 132-247 3-90 (117)
27 PRK10905 cell division protein 46.3 66 0.0014 32.3 6.8 24 14-37 2-25 (328)
28 PF12273 RCR: Chitin synthesis 44.5 20 0.00044 30.0 2.6 15 14-28 7-21 (130)
29 PHA02663 hypothetical protein; 40.1 22 0.00047 32.1 2.2 19 241-259 82-101 (172)
30 cd02035 ArsA ArsA ATPase funct 39.8 7.7 0.00017 34.4 -0.6 23 216-238 102-124 (217)
31 cd05013 SIS_RpiR RpiR-like pro 39.7 1.8E+02 0.0038 22.5 7.1 80 117-198 2-86 (139)
32 cd03110 Fer4_NifH_child This p 38.7 20 0.00043 30.2 1.7 16 226-241 91-106 (179)
33 PF06564 YhjQ: YhjQ protein; 38.2 18 0.00038 34.3 1.5 16 226-241 116-131 (243)
34 cd00550 ArsA_ATPase Oxyanion-t 36.6 9 0.0002 35.1 -0.7 13 225-237 122-134 (254)
35 KOG3022 Predicted ATPase, nucl 35.9 24 0.00053 34.9 2.0 66 224-303 150-226 (300)
36 PF13840 ACT_7: ACT domain ; P 35.7 16 0.00036 27.1 0.7 32 225-259 3-34 (65)
37 TIGR00345 arsA arsenite-activa 35.7 20 0.00043 33.6 1.4 26 226-251 111-140 (284)
38 PF12273 RCR: Chitin synthesis 35.2 18 0.00039 30.3 0.9 12 15-26 11-22 (130)
39 COG4122 Predicted O-methyltran 33.4 4.1E+02 0.009 24.9 11.2 117 94-242 24-147 (219)
40 cd03287 ABC_MSH3_euk MutS3 hom 33.4 2E+02 0.0043 26.4 7.4 69 116-184 96-177 (222)
41 PF02374 ArsA_ATPase: Anion-tr 33.0 25 0.00054 33.6 1.6 46 148-193 26-83 (305)
42 KOG4417 Predicted endonuclease 32.2 26 0.00055 33.9 1.5 25 216-240 104-133 (261)
43 TIGR03202 pucB xanthine dehydr 31.9 68 0.0015 27.3 3.9 30 244-275 78-107 (190)
44 COG1192 Soj ATPases involved i 31.9 26 0.00057 31.3 1.5 14 226-239 118-131 (259)
45 cd00983 recA RecA is a bacter 31.5 1.9E+02 0.0041 28.6 7.3 65 228-292 134-212 (325)
46 TIGR02469 CbiT precorrin-6Y C5 31.0 2E+02 0.0043 21.9 6.0 57 113-169 2-61 (124)
47 COG1278 CspC Cold shock protei 30.6 30 0.00066 27.3 1.4 11 261-271 21-31 (67)
48 TIGR03587 Pse_Me-ase pseudamin 30.5 2.2E+02 0.0048 25.4 7.1 71 104-174 17-90 (204)
49 TIGR01969 minD_arch cell divis 30.1 31 0.00067 30.1 1.6 17 226-242 107-123 (251)
50 PF02310 B12-binding: B12 bind 30.1 2.6E+02 0.0056 21.8 6.6 66 161-233 41-110 (121)
51 PF02254 TrkA_N: TrkA-N domain 29.6 94 0.002 24.1 4.1 105 133-282 1-107 (116)
52 cd06451 AGAT_like Alanine-glyo 29.2 3.7E+02 0.008 24.7 8.5 69 92-161 9-83 (356)
53 COG0489 Mrp ATPases involved i 28.7 17 0.00037 34.0 -0.3 25 216-240 155-179 (265)
54 PF02468 PsbN: Photosystem II 28.5 91 0.002 23.0 3.5 34 15-59 10-43 (43)
55 TIGR01294 P_lamban phospholamb 28.3 46 0.001 25.2 2.0 20 8-27 32-51 (52)
56 TIGR01968 minD_bact septum sit 28.1 36 0.00079 29.7 1.7 15 227-241 111-125 (261)
57 cd03111 CpaE_like This protein 27.9 38 0.00083 26.9 1.6 22 229-259 44-65 (106)
58 PF01656 CbiA: CobQ/CobB/MinD/ 27.4 36 0.00077 28.2 1.4 15 228-242 95-109 (195)
59 PF11119 DUF2633: Protein of u 27.0 92 0.002 24.4 3.5 27 1-27 1-28 (59)
60 PHA02518 ParA-like protein; Pr 26.9 36 0.00079 28.8 1.4 14 226-239 75-88 (211)
61 cd01399 GlcN6P_deaminase GlcN6 26.9 85 0.0019 27.5 3.8 29 114-142 100-128 (232)
62 PF12847 Methyltransf_18: Meth 26.7 1.5E+02 0.0033 22.4 4.7 40 132-171 4-45 (112)
63 PRK07402 precorrin-6B methylas 26.5 4.2E+02 0.0091 22.8 8.4 60 112-171 22-84 (196)
64 PF04072 LCM: Leucine carboxyl 25.7 1.2E+02 0.0027 26.3 4.5 32 129-160 78-109 (183)
65 TIGR00563 rsmB ribosomal RNA s 25.7 70 0.0015 31.6 3.3 32 144-175 354-391 (426)
66 PRK13242 ureA urease subunit g 25.3 31 0.00067 29.4 0.7 14 249-262 12-25 (100)
67 PF04272 Phospholamban: Phosph 24.5 53 0.0012 24.9 1.7 20 8-27 32-51 (52)
68 PF14851 FAM176: FAM176 family 24.4 3.7E+02 0.0079 24.3 7.3 15 19-33 34-48 (153)
69 PF10731 Anophelin: Thrombin i 24.3 68 0.0015 25.5 2.3 19 9-27 1-19 (65)
70 cd02037 MRP-like MRP (Multiple 24.1 43 0.00093 28.1 1.4 15 226-240 66-80 (169)
71 TIGR00347 bioD dethiobiotin sy 23.7 52 0.0011 27.4 1.7 16 226-241 98-113 (166)
72 PF01102 Glycophorin_A: Glycop 23.6 70 0.0015 27.7 2.5 8 11-18 66-73 (122)
73 PRK06067 flagellar accessory p 23.6 1.8E+02 0.0039 25.8 5.2 84 221-306 114-204 (234)
74 PRK03522 rumB 23S rRNA methylu 23.4 3.2E+02 0.0069 25.9 7.1 47 123-171 167-215 (315)
75 cd06453 SufS_like Cysteine des 23.4 5.2E+02 0.011 23.9 8.4 35 215-252 179-213 (373)
76 cd00390 Urease_gamma Urease ga 22.9 35 0.00077 28.8 0.6 14 249-262 9-22 (96)
77 PRK11670 antiporter inner memb 22.6 53 0.0012 32.3 1.9 35 129-163 105-148 (369)
78 PRK13241 ureA urease subunit g 22.4 37 0.0008 28.9 0.6 14 249-262 12-25 (100)
79 PHA02913 TGF-beta-like protein 22.3 45 0.00098 30.6 1.2 16 224-241 88-103 (172)
80 cd01124 KaiC KaiC is a circadi 22.1 87 0.0019 26.0 2.8 81 225-306 93-181 (187)
81 TIGR03371 cellulose_yhjQ cellu 21.8 51 0.0011 28.8 1.4 14 228-241 115-128 (246)
82 PRK02289 4-oxalocrotonate taut 21.1 88 0.0019 22.8 2.3 46 230-275 3-49 (60)
83 cd02036 MinD Bacterial cell di 21.1 62 0.0013 26.5 1.7 12 229-240 64-75 (179)
84 COG0831 UreA Urea amidohydrola 20.9 43 0.00094 28.5 0.7 14 249-262 12-25 (100)
85 COG0445 GidA Flavin-dependent 20.8 1E+02 0.0022 33.4 3.5 38 226-275 3-40 (621)
86 TIGR00193 urease_gam urease, g 20.7 43 0.00093 28.6 0.7 14 249-262 12-25 (102)
87 PRK15128 23S rRNA m(5)C1962 me 20.7 3.1E+02 0.0068 27.5 6.7 81 129-237 220-303 (396)
88 PF12317 IFT46_B_C: Intraflage 20.5 74 0.0016 30.2 2.3 33 161-193 119-151 (214)
89 PRK06141 ornithine cyclodeamin 20.2 2.8E+02 0.0062 26.4 6.1 63 108-170 103-169 (314)
90 TIGR03029 EpsG chain length de 20.1 65 0.0014 29.2 1.7 48 115-162 84-143 (274)
91 smart00204 TGFB Transforming g 20.1 50 0.0011 26.9 0.9 18 222-241 9-27 (102)
92 PF11027 DUF2615: Protein of u 20.1 2.5E+02 0.0053 24.0 5.0 27 9-35 53-80 (103)
No 1
>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627. This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).
Probab=100.00 E-value=9.8e-122 Score=831.72 Aligned_cols=223 Identities=45% Similarity=0.770 Sum_probs=216.4
Q ss_pred cCCChhHHHHHHHHHhCCCCccCcHHHHHHHHHHhhhcCCccEEEeccCchhHhHhhhccCCceeEeccChhHHHHHHhh
Q 021206 91 TKTPPSLANALVHYATTNITPQQTVKEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEK 170 (316)
Q Consensus 91 ~~lP~~v~~AlvHYAtsn~tpqqt~~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~ 170 (316)
+++|++|++|||||||||+|||||.+||+++++||++||||||||||||||||||+||||||||||||||++||++++++
T Consensus 1 t~~p~~~a~AlvhYatsn~t~q~s~~Ei~~~~~VL~~raPCN~LVFGLghdsllW~aLN~gGrTvFLEEd~~~i~~~~~~ 80 (225)
T TIGR01627 1 TTFPLSPADALQHYRASNGPTALMEKELKLLSDVLTRRSPCNILVFGLAHQYLMWSSLNHRGRTVFIEEEKIMIAKAEVN 80 (225)
T ss_pred CCCchhHHHHHHHHHhcCCCcccCHHHHHHHHHHHHhcCCceEEEeccCcchHHHHHhcCCCeeEEecCCHHHHHHHhhc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEeeeccchhhHHHHHHHcCCCCCCCCCCC-CCcccccccccCCCcccccccccEEEEeCCCCCCCCCCCchhH
Q 021206 171 FPTLESYHVEYDTKVNEADELMNAVGSDEECRVVTD-PRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTA 249 (316)
Q Consensus 171 ~P~leay~V~Y~T~v~eA~~LL~~~r~~~~C~pv~~-l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGRM~A 249 (316)
||+||||+|+|+|+++||++||+.+|++++|+|+|+ +++|+|||||+|||+||||++|||||||||+||+|||||||+|
T Consensus 81 ~p~leay~V~Y~t~~~~a~~LL~~~~~~~~C~p~~~~~~~s~C~Lal~~LP~~vYe~~WDvImVDgP~Gy~~eaPGRM~a 160 (225)
T TIGR01627 81 PPNTRIYSVKYHTKVRNAYNLLQHARANPECRPVMNHQGSSDCKLELRDLPQQVYNTKWDVIVVDGPRGDDLETPGRMSS 160 (225)
T ss_pred CCcceEEEEEeehhhhhHHHHHHHhccCCcccCCCCccccCcCccccccCCHHHhcccCcEEEEeCCCCCCCCCCcchhh
Confidence 999999999999999999999998888899999986 4599999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCC-CceEEEecCChhHHHHHHHhhcccccccccccceeeeEecCCCCCCCCCCC
Q 021206 250 IYTAGLMARNRESG-ETDVFVHDVDRVVEDKFSKAFLCEGYLKEQEGRIRHFVVPSHRTRSARPFC 314 (316)
Q Consensus 250 IyTAavmARar~~g-~TdVfVHDVdR~VE~~fs~EFLC~~nLv~~~GrLwHF~Ip~~~~~~~~~FC 314 (316)
|||||||||+|++| +||||||||||+|||+|||||||++|||+++||||||+||+|++.+ ++||
T Consensus 161 IyTAav~AR~r~~g~~TdVfVHDvdR~VE~~fs~eFLC~~~lv~~~grL~HF~Ip~~~~~~-~~FC 225 (225)
T TIGR01627 161 IYTAAVLARKGSSGSTTDVFVHDVHRTVEKWLSWEFLCQENLVEANGTLWHFRIKRQSNAS-RAFC 225 (225)
T ss_pred HHHHHHHHHhccCCCCceEEEecCCcHHHHHHHHHhcchHHHHhccCceeeEEecCCcCCC-CCCC
Confidence 99999999999875 7999999999999999999999999999999999999999998755 6899
No 2
>PF04669 Polysacc_synt_4: Polysaccharide biosynthesis; InterPro: IPR021148 This is a eukaryotic family of uncharacterised proteins. ; PDB: 2JYN_A.
Probab=100.00 E-value=7.6e-87 Score=593.49 Aligned_cols=184 Identities=59% Similarity=1.069 Sum_probs=106.6
Q ss_pred HHHHHHHHHhhhcCC-ccEEEeccCchhHhHhhhccCCceeEeccChhHHHHHHhhCCCceeEEeeeccchhhHHHHHHH
Q 021206 116 KEISVSLRVLAQKSP-CNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMNA 194 (316)
Q Consensus 116 ~Ei~~~~~VL~~raP-CNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~P~leay~V~Y~T~v~eA~~LL~~ 194 (316)
.||+.+++||++++| |||||||||||+|||+++||||||||||||++|+++++++||++++|+|+|+|++.++++||+.
T Consensus 1 ~E~~~a~~~l~~~~p~cNlLvfgl~~~sl~wt~ln~~GrTvFlee~~~~~~~~~~~fP~l~~~~v~y~t~~~~a~~Ll~~ 80 (190)
T PF04669_consen 1 IEIAWAAKVLQHREPYCNLLVFGLGPDSLLWTSLNDGGRTVFLEEDPAWYSSFRKRFPDLEAYHVRYRTKVIDADELLSK 80 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS--TTS--SSTTHHH-----------HHHHHHHH-TTT----SHHHHHB--STTTSSH
T ss_pred CcHHHHHHHHHHhCCCceEEEEeCCCccccchhcCcCcccchhhHHHHHHHHHHHHCcCCcccCcccccccCCHHHHhCc
Confidence 599999999999998 9999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCcccccccccCCCcccccccccEEEEeCCCCCCCCCCCchhHHHHHHHHHhhcCCC---CceEEEec
Q 021206 195 VGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRESG---ETDVFVHD 271 (316)
Q Consensus 195 ~r~~~~C~pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGRM~AIyTAavmARar~~g---~TdVfVHD 271 (316)
+|. ++|+|+|++++|+|||||+|||++||+++|||||||||+||+|+|||||+||||||||||+|++| +|||||||
T Consensus 81 ~~~-~~C~~~~~~~~s~C~lal~~LP~~vy~~~WDvi~vd~p~g~~~daPGRM~aIytag~LaR~~~~~~~t~t~VfVhd 159 (190)
T PF04669_consen 81 ARS-PECRPVQNLRFSECKLALNDLPNEVYKEKWDVIFVDAPRGYVPDAPGRMAAIYTAGVLARARASGGYTETDVFVHD 159 (190)
T ss_dssp H----------------------------HHHHH-HHHHHHHTTT-S---------TTS-EEEESBTTS-S-TTEEEE-H
T ss_pred ccc-ccccccccccccccccccccccchhhhhhHHHHHHHcCCCCCCccchhhhhhccHHHHhhccCCCCCCCCEEEEEc
Confidence 888 99999999999999999999999999999999999999999999999999999999999999864 36999999
Q ss_pred CChhHHHHHHHhhcccccccccccc--eeee
Q 021206 272 VDRVVEDKFSKAFLCEGYLKEQEGR--IRHF 300 (316)
Q Consensus 272 VdR~VE~~fs~EFLC~~nLv~~~Gr--LwHF 300 (316)
|||+|||+||+||||++|+++++|+ ||||
T Consensus 160 v~R~vE~~~s~eFLc~e~l~~~~G~~~l~hF 190 (190)
T PF04669_consen 160 VDRPVEKWFSEEFLCIEILRNREGRNDLWHF 190 (190)
T ss_dssp H----------HHHHHHHHHHHTTTTGGG--
T ss_pred ccccccchhHHHHHHHHHHHhCCCchhhccC
Confidence 9999999999999999999999999 9999
No 3
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=95.83 E-value=0.09 Score=50.10 Aligned_cols=155 Identities=21% Similarity=0.314 Sum_probs=113.4
Q ss_pred HHHHHHHHHhhhcCCccEEEeccCchhHhHhhhccC--CceeEeccChhHHHHHHhhCCCce--eEEeeeccchhhHHHH
Q 021206 116 KEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHG--GRTLFLEEDKSWINQIKEKFPTLE--SYHVEYDTKVNEADEL 191 (316)
Q Consensus 116 ~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~P~le--ay~V~Y~T~v~eA~~L 191 (316)
-|.-+....+.+..|=+.||-|+|--+.++..+-|. -+-+.+|=|+..|+-.++-.|... ++|=+-.-.+.++.+.
T Consensus 63 hEml~h~~~~ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~ 142 (282)
T COG0421 63 HEMLAHVPLLAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF 142 (282)
T ss_pred HHHHHhchhhhCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH
Confidence 344555556677667799999999999999999998 699999999999999888888765 4433334444677777
Q ss_pred HHHcCCCCCCCCCCCCCcccccccccCCCcccccccccEEEEeCCCCCCCCCCCchhHHHHHHHHHhhc----CCC----
Q 021206 192 MNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNR----ESG---- 263 (316)
Q Consensus 192 L~~~r~~~~C~pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGRM~AIyTAavmARar----~~g---- 263 (316)
|+ +-+ -++|||++|.-- |+.|| .+.||.-..--.+ .+|
T Consensus 143 v~------------------------~~~-----~~fDvIi~D~td---p~gp~--~~Lft~eFy~~~~~~L~~~Gi~v~ 188 (282)
T COG0421 143 LR------------------------DCE-----EKFDVIIVDSTD---PVGPA--EALFTEEFYEGCRRALKEDGIFVA 188 (282)
T ss_pred HH------------------------hCC-----CcCCEEEEcCCC---CCCcc--cccCCHHHHHHHHHhcCCCcEEEE
Confidence 76 111 169999999766 34443 4566665543333 234
Q ss_pred -CceEEEe-----cCChhHHHHHHHhhcccccccccccceeeeEecC
Q 021206 264 -ETDVFVH-----DVDRVVEDKFSKAFLCEGYLKEQEGRIRHFVVPS 304 (316)
Q Consensus 264 -~TdVfVH-----DVdR~VE~~fs~EFLC~~nLv~~~GrLwHF~Ip~ 304 (316)
.-+-|.| +..|.++++|+..-...-.+-.-.+..|-|.+.+
T Consensus 189 q~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g~~~f~~~s 235 (282)
T COG0421 189 QAGSPFLQDEEIALAYRNVSRVFSIVPPYVAPIPTYPSGFWGFIVAS 235 (282)
T ss_pred ecCCcccchHHHHHHHHHHHhhccccccceeccceecCCceEEEEee
Confidence 2235556 5889999999998888888888888999999977
No 4
>PLN02823 spermine synthase
Probab=94.73 E-value=0.29 Score=47.55 Aligned_cols=102 Identities=17% Similarity=0.320 Sum_probs=67.4
Q ss_pred HhhhcCCccEEEeccCchhHhHhhhccC--CceeEeccChhHHHHHHhhCCCce-eE-EeeeccchhhHHHHHHHcCCCC
Q 021206 124 VLAQKSPCNFLVFGLGYDSLMWSALNHG--GRTLFLEEDKSWINQIKEKFPTLE-SY-HVEYDTKVNEADELMNAVGSDE 199 (316)
Q Consensus 124 VL~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~P~le-ay-~V~Y~T~v~eA~~LL~~~r~~~ 199 (316)
.+....|-++||.|+|--++....+.|. .+-+.+|=|+.-++-+++-+|... ++ +=+-+-.+.||.+.|+..
T Consensus 98 l~~~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~---- 173 (336)
T PLN02823 98 LLHHPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR---- 173 (336)
T ss_pred HhhCCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC----
Confidence 3445679999999999888887777764 467899999999998888776421 11 112223345666666410
Q ss_pred CCCCCCCCCcccccccccCCCcccccccccEEEEeCCCCCCCCCCCchhHHHHHHHHH
Q 021206 200 ECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMA 257 (316)
Q Consensus 200 ~C~pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGRM~AIyTAavmA 257 (316)
+-+||||++|.+. |...|-....||.-.+.
T Consensus 174 -------------------------~~~yDvIi~D~~d---p~~~~~~~~Lyt~eF~~ 203 (336)
T PLN02823 174 -------------------------DEKFDVIIGDLAD---PVEGGPCYQLYTKSFYE 203 (336)
T ss_pred -------------------------CCCccEEEecCCC---ccccCcchhhccHHHHH
Confidence 1259999999865 33333335678866544
No 5
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=94.48 E-value=0.17 Score=46.57 Aligned_cols=51 Identities=24% Similarity=0.432 Sum_probs=40.0
Q ss_pred HhhhcCCccEEEeccCchhHhHhhhccC--CceeEeccChhHHHHHHhhCCCc
Q 021206 124 VLAQKSPCNFLVFGLGYDSLMWSALNHG--GRTLFLEEDKSWINQIKEKFPTL 174 (316)
Q Consensus 124 VL~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~P~l 174 (316)
.+....|=+.|+.|.|-..+....+.++ .+.+.+|-|+.-++..++..|.+
T Consensus 67 l~~~~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~ 119 (270)
T TIGR00417 67 LFTHPNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSL 119 (270)
T ss_pred hhcCCCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhh
Confidence 3445567799999999988887777775 57889999999998888766543
No 6
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=94.42 E-value=0.28 Score=44.61 Aligned_cols=118 Identities=19% Similarity=0.180 Sum_probs=74.8
Q ss_pred ChhHHHHHHHHHhCC--CCccC--cHHHHHHHHHHhhhcCCccEEEecc--CchhHhHhh-hccCCceeEeccChhHHHH
Q 021206 94 PPSLANALVHYATTN--ITPQQ--TVKEISVSLRVLAQKSPCNFLVFGL--GYDSLMWSA-LNHGGRTLFLEEDKSWINQ 166 (316)
Q Consensus 94 P~~v~~AlvHYAtsn--~tpqq--t~~Ei~~~~~VL~~raPCNfLVFGL--g~dslmW~a-LN~gGrTvFLEEd~~~i~~ 166 (316)
...+++.+.+||..+ ..++| +..+-+.+..+++...|=++|-.|- |..++.+++ +..+|+-+.+|-|+++++.
T Consensus 29 ~~~~l~~~~~~a~~~~~~~~~~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~ 108 (234)
T PLN02781 29 EHELLKELREATVQKYGNLSEMEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEV 108 (234)
T ss_pred CCHHHHHHHHHHHhccccCcccccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHH
Confidence 346788888898655 33543 5555455555555567889999985 555555554 3457999999999999887
Q ss_pred HHhhC--CCceeEEeeeccchhhHHHHHHHcCCCCCCCCCCCCCcccccccccCCCcccccccccEEEEeCCCC
Q 021206 167 IKEKF--PTLESYHVEYDTKVNEADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTG 238 (316)
Q Consensus 167 v~~~~--P~leay~V~Y~T~v~eA~~LL~~~r~~~~C~pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~G 238 (316)
+++.. .+++ ..| +-...+|.+.|..+..+++ +-.+|+|.+|++++
T Consensus 109 A~~n~~~~gl~-~~i--~~~~gda~~~L~~l~~~~~------------------------~~~fD~VfiDa~k~ 155 (234)
T PLN02781 109 GLEFIKKAGVD-HKI--NFIQSDALSALDQLLNNDP------------------------KPEFDFAFVDADKP 155 (234)
T ss_pred HHHHHHHcCCC-CcE--EEEEccHHHHHHHHHhCCC------------------------CCCCCEEEECCCHH
Confidence 77653 2232 222 2234566666664432211 22689999999873
No 7
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=93.69 E-value=0.27 Score=44.56 Aligned_cols=120 Identities=23% Similarity=0.347 Sum_probs=78.4
Q ss_pred ChhHHHHHHHHHhCCC-CccC--cHHHHHHHHHHhhhcCCccEEEecc--CchhHhHh-hhccCCceeEeccChhHHHHH
Q 021206 94 PPSLANALVHYATTNI-TPQQ--TVKEISVSLRVLAQKSPCNFLVFGL--GYDSLMWS-ALNHGGRTLFLEEDKSWINQI 167 (316)
Q Consensus 94 P~~v~~AlvHYAtsn~-tpqq--t~~Ei~~~~~VL~~raPCNfLVFGL--g~dslmW~-aLN~gGrTvFLEEd~~~i~~v 167 (316)
-+.++..+.+++..+. .++| +..+-+.+...++..-|-|.|-+|- |.-++.|+ ++-.+|+-+=+|-|+++++..
T Consensus 7 ~~~~l~~l~~~t~~~~~~~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A 86 (205)
T PF01596_consen 7 EPELLKELREFTRENQGLPQMSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIA 86 (205)
T ss_dssp STHHHHHHHHHHHCTTTTGGGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHH
T ss_pred CCHHHHHHHHHHHhCcCCCCCccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHH
Confidence 4577889999998765 5555 3345555555555588999999975 77777777 566789999999999998776
Q ss_pred HhhC--CCceeEEeeeccchhhHHHHHHHcCCCCCCCCCCCCCcccccccccCCCcccccccccEEEEeCCCCCC
Q 021206 168 KEKF--PTLESYHVEYDTKVNEADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYH 240 (316)
Q Consensus 168 ~~~~--P~leay~V~Y~T~v~eA~~LL~~~r~~~~C~pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~ 240 (316)
++.+ -+++ ..|++ ...+|.+.|..+.... -+-.+|+|.|||.++-+
T Consensus 87 ~~~~~~ag~~-~~I~~--~~gda~~~l~~l~~~~------------------------~~~~fD~VFiDa~K~~y 134 (205)
T PF01596_consen 87 RENFRKAGLD-DRIEV--IEGDALEVLPELANDG------------------------EEGQFDFVFIDADKRNY 134 (205)
T ss_dssp HHHHHHTTGG-GGEEE--EES-HHHHHHHHHHTT------------------------TTTSEEEEEEESTGGGH
T ss_pred HHHHHhcCCC-CcEEE--EEeccHhhHHHHHhcc------------------------CCCceeEEEEcccccch
Confidence 6421 2222 12222 2356777776443211 03469999999988644
No 8
>PRK01581 speE spermidine synthase; Validated
Probab=93.53 E-value=1 Score=45.13 Aligned_cols=147 Identities=21% Similarity=0.259 Sum_probs=88.6
Q ss_pred hhcCCccEEEeccCchhHhHhhhccC--CceeEeccChhHHHHHHhhCCCcee-----E-EeeeccchhhHHHHHHHcCC
Q 021206 126 AQKSPCNFLVFGLGYDSLMWSALNHG--GRTLFLEEDKSWINQIKEKFPTLES-----Y-HVEYDTKVNEADELMNAVGS 197 (316)
Q Consensus 126 ~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~P~lea-----y-~V~Y~T~v~eA~~LL~~~r~ 197 (316)
....|=+.||.|.|--..+=..+-|. ++-+-+|=|+.-++-.++ +|.+.. + +=+-+-.+.||.+.|+..
T Consensus 147 ~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~-~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~-- 223 (374)
T PRK01581 147 KVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARN-VPELVSLNKSAFFDNRVNVHVCDAKEFLSSP-- 223 (374)
T ss_pred hCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-ccccchhccccCCCCceEEEECcHHHHHHhc--
Confidence 44678899999999777766666664 688889999998887775 544421 1 112222335566655410
Q ss_pred CCCCCCCCCCCcccccccccCCCcccccccccEEEEeCCCCCCCCCCCchhHHHHHHHHHhhcC----CCCc------eE
Q 021206 198 DEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRE----SGET------DV 267 (316)
Q Consensus 198 ~~~C~pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGRM~AIyTAavmARar~----~g~T------dV 267 (316)
+-++|||++|.|.+..+ .....||...+...++ ||.- -.
T Consensus 224 ---------------------------~~~YDVIIvDl~DP~~~----~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~ 272 (374)
T PRK01581 224 ---------------------------SSLYDVIIIDFPDPATE----LLSTLYTSELFARIATFLTEDGAFVCQSNSPA 272 (374)
T ss_pred ---------------------------CCCccEEEEcCCCcccc----chhhhhHHHHHHHHHHhcCCCcEEEEecCChh
Confidence 12699999998753322 2477888776655443 3420 01
Q ss_pred EEecCChhHHHHHHHhhccccccc---ccccceeeeEecCCC
Q 021206 268 FVHDVDRVVEDKFSKAFLCEGYLK---EQEGRIRHFVVPSHR 306 (316)
Q Consensus 268 fVHDVdR~VE~~fs~EFLC~~nLv---~~~GrLwHF~Ip~~~ 306 (316)
+-.++-..+-+++...|+--.... ..-|-+|=|.|.+..
T Consensus 273 ~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~WgF~~as~~ 314 (374)
T PRK01581 273 DAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAANS 314 (374)
T ss_pred hhHHHHHHHHHHHHHhCCceEEEEEecCCCCCceEEEEEeCC
Confidence 111222335666777777554333 244667999998753
No 9
>PLN02476 O-methyltransferase
Probab=93.43 E-value=0.65 Score=44.39 Aligned_cols=143 Identities=17% Similarity=0.160 Sum_probs=88.0
Q ss_pred ChhHHHHHHHHHhCCCC--ccCcHHHHHHHHHHhhhcCCccEEEeccCch-hHhHhhh--ccCCceeEeccChhHHHHHH
Q 021206 94 PPSLANALVHYATTNIT--PQQTVKEISVSLRVLAQKSPCNFLVFGLGYD-SLMWSAL--NHGGRTLFLEEDKSWINQIK 168 (316)
Q Consensus 94 P~~v~~AlvHYAtsn~t--pqqt~~Ei~~~~~VL~~raPCNfLVFGLg~d-slmW~aL--N~gGrTvFLEEd~~~i~~v~ 168 (316)
+.++++.+.+|+..+.- ++.+.++-+.+..+++...|=++|=.|-+-. |.+|.+. ..+|+-+=+|-|+.+++..+
T Consensus 81 ~~~~L~~l~e~a~~~~~~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar 160 (278)
T PLN02476 81 EPKILRQLREETSKMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAK 160 (278)
T ss_pred CCHHHHHHHHHHHhccCCccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 45678888888876633 3456766676777777778889999976333 3445544 56899899999999887666
Q ss_pred hhC--CCceeEEeeeccchhhHHHHHHHcCCCCCCCCCCCCCcccccccccCCCcccccccccEEEEeCCCCCCCCCCCc
Q 021206 169 EKF--PTLESYHVEYDTKVNEADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGR 246 (316)
Q Consensus 169 ~~~--P~leay~V~Y~T~v~eA~~LL~~~r~~~~C~pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGR 246 (316)
+.. -+++ ..|+. ...+|.+.|..+..+. .+-.+|+|.|||+++-++
T Consensus 161 ~n~~~aGl~-~~I~l--i~GdA~e~L~~l~~~~------------------------~~~~FD~VFIDa~K~~Y~----- 208 (278)
T PLN02476 161 RYYELAGVS-HKVNV--KHGLAAESLKSMIQNG------------------------EGSSYDFAFVDADKRMYQ----- 208 (278)
T ss_pred HHHHHcCCC-CcEEE--EEcCHHHHHHHHHhcc------------------------cCCCCCEEEECCCHHHHH-----
Confidence 443 3333 22322 2356777776442210 023589999999984332
Q ss_pred hhHHHHHHHHHhhcCCC---CceEEEec
Q 021206 247 MTAIYTAGLMARNRESG---ETDVFVHD 271 (316)
Q Consensus 247 M~AIyTAavmARar~~g---~TdVfVHD 271 (316)
..|- ..+-.-|+|| .-+|+-|.
T Consensus 209 --~y~e-~~l~lL~~GGvIV~DNvL~~G 233 (278)
T PLN02476 209 --DYFE-LLLQLVRVGGVIVMDNVLWHG 233 (278)
T ss_pred --HHHH-HHHHhcCCCcEEEEecCccCC
Confidence 3333 3344445566 24465554
No 10
>PRK00811 spermidine synthase; Provisional
Probab=92.44 E-value=1 Score=42.07 Aligned_cols=99 Identities=17% Similarity=0.363 Sum_probs=64.3
Q ss_pred hhhcCCccEEEeccCchhHhHhhhccC--CceeEeccChhHHHHHHhhCCCcee--E-EeeeccchhhHHHHHHHcCCCC
Q 021206 125 LAQKSPCNFLVFGLGYDSLMWSALNHG--GRTLFLEEDKSWINQIKEKFPTLES--Y-HVEYDTKVNEADELMNAVGSDE 199 (316)
Q Consensus 125 L~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~P~lea--y-~V~Y~T~v~eA~~LL~~~r~~~ 199 (316)
+....|-++||.|.|--...-..+.|. .+-+.+|=|+.-++.+++..|.+.. + +-+-+-...+|.+.++. .
T Consensus 72 ~~~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~---~- 147 (283)
T PRK00811 72 FAHPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE---T- 147 (283)
T ss_pred hhCCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh---C-
Confidence 444678999999999998888888873 4679999999999988877664321 1 11112223455555541 0
Q ss_pred CCCCCCCCCcccccccccCCCcccccccccEEEEeCCCCCCCCCCCchhHHHHHHHHH
Q 021206 200 ECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMA 257 (316)
Q Consensus 200 ~C~pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGRM~AIyTAavmA 257 (316)
+-.+|||++|.+..+.|. ...||...+.
T Consensus 148 -------------------------~~~yDvIi~D~~dp~~~~-----~~l~t~ef~~ 175 (283)
T PRK00811 148 -------------------------ENSFDVIIVDSTDPVGPA-----EGLFTKEFYE 175 (283)
T ss_pred -------------------------CCcccEEEECCCCCCCch-----hhhhHHHHHH
Confidence 126999999997765332 2345655443
No 11
>PRK03612 spermidine synthase; Provisional
Probab=92.09 E-value=1.2 Score=45.40 Aligned_cols=145 Identities=17% Similarity=0.202 Sum_probs=82.6
Q ss_pred hcCCccEEEeccCchhHhHhhhccC--CceeEeccChhHHHHHHh--hCCCcee--EE-eeeccchhhHHHHHHHcCCCC
Q 021206 127 QKSPCNFLVFGLGYDSLMWSALNHG--GRTLFLEEDKSWINQIKE--KFPTLES--YH-VEYDTKVNEADELMNAVGSDE 199 (316)
Q Consensus 127 ~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~--~~P~lea--y~-V~Y~T~v~eA~~LL~~~r~~~ 199 (316)
.+.|-++|+.|.|--...-..+.|+ .+-+.+|=|+.-++..++ ..+++.. ++ =+.+-...|+.+.++.
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~----- 369 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK----- 369 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh-----
Confidence 4678999999999888777667775 489999999999998887 3333321 11 0111123455555541
Q ss_pred CCCCCCCCCcccccccccCCCcccccccccEEEEeCCCCCCCCCCCchhHHHHHHHHHhh----cCCCCceEE-----Ee
Q 021206 200 ECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARN----RESGETDVF-----VH 270 (316)
Q Consensus 200 ~C~pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGRM~AIyTAavmARa----r~~g~TdVf-----VH 270 (316)
.+ -++|+|++|.|..+.|. + ...||...+... +.+| .=|+ .|
T Consensus 370 -------------------~~-----~~fDvIi~D~~~~~~~~-~---~~L~t~ef~~~~~~~L~pgG-~lv~~~~~~~~ 420 (521)
T PRK03612 370 -------------------LA-----EKFDVIIVDLPDPSNPA-L---GKLYSVEFYRLLKRRLAPDG-LLVVQSTSPYF 420 (521)
T ss_pred -------------------CC-----CCCCEEEEeCCCCCCcc-h---hccchHHHHHHHHHhcCCCe-EEEEecCCccc
Confidence 11 15899999987643322 2 335554433332 2334 2121 12
Q ss_pred c--CChhHHHHHHHh-hcccccc--cccccceeeeEecCCC
Q 021206 271 D--VDRVVEDKFSKA-FLCEGYL--KEQEGRIRHFVVPSHR 306 (316)
Q Consensus 271 D--VdR~VE~~fs~E-FLC~~nL--v~~~GrLwHF~Ip~~~ 306 (316)
+ .-+.+.+...+. |-+..|. +..-| .|.|.+.+..
T Consensus 421 ~~~~~~~i~~~l~~~gf~v~~~~~~vps~g-~w~f~~as~~ 460 (521)
T PRK03612 421 APKAFWSIEATLEAAGLATTPYHVNVPSFG-EWGFVLAGAG 460 (521)
T ss_pred chHHHHHHHHHHHHcCCEEEEEEeCCCCcc-hhHHHeeeCC
Confidence 2 223455666666 5333332 23445 8999998653
No 12
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=91.48 E-value=0.53 Score=43.40 Aligned_cols=152 Identities=16% Similarity=0.252 Sum_probs=86.3
Q ss_pred HHHhhhcCCccEEEeccCchhHhHhhhccC--CceeEeccChhHHHHHHhhCCCceeE--EeeeccchhhHHHHHHHcCC
Q 021206 122 LRVLAQKSPCNFLVFGLGYDSLMWSALNHG--GRTLFLEEDKSWINQIKEKFPTLESY--HVEYDTKVNEADELMNAVGS 197 (316)
Q Consensus 122 ~~VL~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~P~leay--~V~Y~T~v~eA~~LL~~~r~ 197 (316)
.-++....|=|.||.|+|--......+.|. .+...+|-|+.-++-.++-+|....- +=+.+....||.+.|+
T Consensus 69 ~~~~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~---- 144 (246)
T PF01564_consen 69 PPLLLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLK---- 144 (246)
T ss_dssp HHHHHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHH----
T ss_pred hHhhcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHH----
Confidence 344555689999999999999988888886 57889999999888776654432111 1112223356666666
Q ss_pred CCCCCCCCCCCcccccccccCCCcccccccccEEEEeCCCCCCCCCCCchhHHHHHHHHHhhcC----CCCceEEEe---
Q 021206 198 DEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRE----SGETDVFVH--- 270 (316)
Q Consensus 198 ~~~C~pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGRM~AIyTAavmARar~----~g~TdVfVH--- 270 (316)
.-+.+ ++|||++|.+. |..|+-. .||.-.+...++ +|.-=+-.+
T Consensus 145 --------------------~~~~~----~yDvIi~D~~d---p~~~~~~--l~t~ef~~~~~~~L~~~Gv~v~~~~~~~ 195 (246)
T PF01564_consen 145 --------------------ETQEE----KYDVIIVDLTD---PDGPAPN--LFTREFYQLCKRRLKPDGVLVLQAGSPF 195 (246)
T ss_dssp --------------------TSSST-----EEEEEEESSS---TTSCGGG--GSSHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred --------------------hccCC----cccEEEEeCCC---CCCCccc--ccCHHHHHHHHhhcCCCcEEEEEccCcc
Confidence 22222 79999999987 4444433 677665544433 342111111
Q ss_pred ---cCChhHHHHHHHhhc-ccccc--ccccc-ceeeeEecCCC
Q 021206 271 ---DVDRVVEDKFSKAFL-CEGYL--KEQEG-RIRHFVVPSHR 306 (316)
Q Consensus 271 ---DVdR~VE~~fs~EFL-C~~nL--v~~~G-rLwHF~Ip~~~ 306 (316)
+.-+.+.+.+...|- |.-+. +-.-| ..|-|.+.+..
T Consensus 196 ~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~~~~~~~~s~~ 238 (246)
T PF01564_consen 196 LHPELFKSILKTLRSVFPQVKPYTAYVPSYGSGWWSFASASKD 238 (246)
T ss_dssp TTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSSEEEEEEEESS
T ss_pred cchHHHHHHHHHHHHhCCceEEEEEEcCeecccceeEEEEeCC
Confidence 122344555555553 22222 22323 45778876654
No 13
>PRK04457 spermidine synthase; Provisional
Probab=88.93 E-value=11 Score=35.05 Aligned_cols=44 Identities=25% Similarity=0.277 Sum_probs=36.4
Q ss_pred cCCccEEEeccCchhHh--HhhhccCCceeEeccChhHHHHHHhhC
Q 021206 128 KSPCNFLVFGLGYDSLM--WSALNHGGRTLFLEEDKSWINQIKEKF 171 (316)
Q Consensus 128 raPCNfLVFGLg~dslm--W~aLN~gGrTvFLEEd~~~i~~v~~~~ 171 (316)
..|=++|+.|+|.-++. |+...++++-+-+|=|+.-++.+++.+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f 110 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHF 110 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHc
Confidence 45778999999888764 666677888899999999999888765
No 14
>PLN02366 spermidine synthase
Probab=88.68 E-value=3.9 Score=39.33 Aligned_cols=147 Identities=18% Similarity=0.271 Sum_probs=84.3
Q ss_pred hcCCccEEEeccCchhHhHhhhccC--CceeEeccChhHHHHHHhhCCCce-eE-EeeeccchhhHHHHHHHcCCCCCCC
Q 021206 127 QKSPCNFLVFGLGYDSLMWSALNHG--GRTLFLEEDKSWINQIKEKFPTLE-SY-HVEYDTKVNEADELMNAVGSDEECR 202 (316)
Q Consensus 127 ~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~P~le-ay-~V~Y~T~v~eA~~LL~~~r~~~~C~ 202 (316)
...|=++||.|.|.-.+.-..+.|. .+-+.+|=|+.-|+-.++.+|.+. .+ +=+.+-...+|.+.|+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~--------- 159 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK--------- 159 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh---------
Confidence 4568899999999887776666664 366788989998888877776531 00 0111122234444443
Q ss_pred CCCCCCcccccccccCCCcccccccccEEEEeCCCCCCCCCCCchhHHHHHHHHHhhc----CCCC-----ceEEEe-cC
Q 021206 203 VVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNR----ESGE-----TDVFVH-DV 272 (316)
Q Consensus 203 pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGRM~AIyTAavmARar----~~g~-----TdVfVH-DV 272 (316)
+.| +-++|||++|++....| + ...||...+...+ .+|. ...+.| +.
T Consensus 160 ---------------~~~----~~~yDvIi~D~~dp~~~--~---~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~ 215 (308)
T PLN02366 160 ---------------NAP----EGTYDAIIVDSSDPVGP--A---QELFEKPFFESVARALRPGGVVCTQAESMWLHMDL 215 (308)
T ss_pred ---------------hcc----CCCCCEEEEcCCCCCCc--h---hhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHH
Confidence 222 12699999999876544 2 3355655544433 3452 122333 23
Q ss_pred ChhHHHHHHHhhc--ccccc--cc-cccceeeeEecCCC
Q 021206 273 DRVVEDKFSKAFL--CEGYL--KE-QEGRIRHFVVPSHR 306 (316)
Q Consensus 273 dR~VE~~fs~EFL--C~~nL--v~-~~GrLwHF~Ip~~~ 306 (316)
-+.+-+.+...|- ..-|. |- -.|-.|-|.+.+..
T Consensus 216 ~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w~f~~as~~ 254 (308)
T PLN02366 216 IEDLIAICRETFKGSVNYAWTTVPTYPSGVIGFVLCSKE 254 (308)
T ss_pred HHHHHHHHHHHCCCceeEEEecCCCcCCCceEEEEEECC
Confidence 3455666677771 12111 11 22467999998764
No 15
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=87.25 E-value=4.6 Score=37.84 Aligned_cols=136 Identities=17% Similarity=0.184 Sum_probs=85.9
Q ss_pred ChhHHHHHHHHHhCCCCccC--cHHHHHHHHHHhhhcCCccEEEecc--CchhHhHh-hhccCCceeEeccChhHHHHHH
Q 021206 94 PPSLANALVHYATTNITPQQ--TVKEISVSLRVLAQKSPCNFLVFGL--GYDSLMWS-ALNHGGRTLFLEEDKSWINQIK 168 (316)
Q Consensus 94 P~~v~~AlvHYAtsn~tpqq--t~~Ei~~~~~VL~~raPCNfLVFGL--g~dslmW~-aLN~gGrTvFLEEd~~~i~~v~ 168 (316)
..++++.+.++|..+..|.| +.++-+.+..+++...|=+.|-+|- |.-++.++ ++..+|+-+=+|=|+.+++..+
T Consensus 42 ~~~~L~~l~~~a~~~~~~~~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar 121 (247)
T PLN02589 42 EPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGL 121 (247)
T ss_pred CCHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH
Confidence 34567888889876655544 5677777777777778889999985 55555443 3456899999999999887655
Q ss_pred hhC--CCceeEEeeeccchhhHHHHHHHcCCCCCCCCCCCCCcccccccccCCCcccccccccEEEEeCCCCCCCCCCCc
Q 021206 169 EKF--PTLESYHVEYDTKVNEADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGR 246 (316)
Q Consensus 169 ~~~--P~leay~V~Y~T~v~eA~~LL~~~r~~~~C~pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGR 246 (316)
+.. -++. ..|.+. ..+|.+.|..+.... -|+-.+|+|.|||-++-++
T Consensus 122 ~~~~~ag~~-~~I~~~--~G~a~e~L~~l~~~~-----------------------~~~~~fD~iFiDadK~~Y~----- 170 (247)
T PLN02589 122 PVIQKAGVA-HKIDFR--EGPALPVLDQMIEDG-----------------------KYHGTFDFIFVDADKDNYI----- 170 (247)
T ss_pred HHHHHCCCC-CceEEE--eccHHHHHHHHHhcc-----------------------ccCCcccEEEecCCHHHhH-----
Confidence 432 2332 344332 346767666443210 1234699999998875543
Q ss_pred hhHHHHHHHHHhhcCCC
Q 021206 247 MTAIYTAGLMARNRESG 263 (316)
Q Consensus 247 M~AIyTAavmARar~~g 263 (316)
..|- ..+-.-|.||
T Consensus 171 --~y~~-~~l~ll~~GG 184 (247)
T PLN02589 171 --NYHK-RLIDLVKVGG 184 (247)
T ss_pred --HHHH-HHHHhcCCCe
Confidence 3332 2344555566
No 16
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=74.19 E-value=4 Score=31.27 Aligned_cols=14 Identities=29% Similarity=0.657 Sum_probs=12.0
Q ss_pred ccEEEEeCCCCCCC
Q 021206 228 WDLIMVDAPTGYHE 241 (316)
Q Consensus 228 WDvImVDgP~Gy~~ 241 (316)
+|+|+||.|.++.+
T Consensus 40 ~d~viiD~p~~~~~ 53 (104)
T cd02042 40 YDYIIIDTPPSLGL 53 (104)
T ss_pred CCEEEEeCcCCCCH
Confidence 89999999997754
No 17
>PF10718 Ycf34: Hypothetical chloroplast protein Ycf34; InterPro: IPR019656 This entry represents Ycf34, a protein encoded in algal genomes and additionally found in cyanobacteria. The function is not known. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=62.51 E-value=2.7 Score=34.09 Aligned_cols=33 Identities=15% Similarity=0.426 Sum_probs=23.6
Q ss_pred cccccccCCCcccccccccEEEEeCCCCCCCCCCCch
Q 021206 211 KCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRM 247 (316)
Q Consensus 211 ~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGRM 247 (316)
.=..-++++++..|++||||+=-+ -|-+-|||-
T Consensus 40 ~I~VnI~~~~~~~~~~EWDVv~C~----SF~ee~GkW 72 (77)
T PF10718_consen 40 TIHVNIRSLKNGEIEMEWDVVGCL----SFVEEPGKW 72 (77)
T ss_pred EEEEEEEeCCCCcEEEEEEecccc----cchhcCCch
Confidence 334678899999999999998433 245566653
No 18
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=61.61 E-value=1.9 Score=42.08 Aligned_cols=26 Identities=46% Similarity=0.554 Sum_probs=19.9
Q ss_pred ccccCCCcccccccccEEEEe-CCCCC
Q 021206 214 LALKGFPSEVYDVEWDLIMVD-APTGY 239 (316)
Q Consensus 214 LAL~~LP~evYe~eWDvImVD-gP~Gy 239 (316)
+++.-+=..+.+-+||+|+|| +|+|.
T Consensus 112 ~~l~~i~e~~~~~~yD~IV~DtaPTG~ 138 (322)
T COG0003 112 LALLKILEYYVSGEYDVIVVDTAPTGH 138 (322)
T ss_pred HHHHHHHHHHhccCCCEEEEcCCChHH
Confidence 445555566778889999999 77886
No 19
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=57.77 E-value=11 Score=27.85 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=37.1
Q ss_pred ccccEEEEeCCCCCCCCCCCchhHHHHHHHHHhhcCCCCceEEEecCChhHHHHH
Q 021206 226 VEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRESGETDVFVHDVDRVVEDKF 280 (316)
Q Consensus 226 ~eWDvImVDgP~Gy~~eaPGRM~AIyTAavmARar~~g~TdVfVHDVdR~VE~~f 280 (316)
-.|-|-.-.+- .-.-..+-+-.||=-|-.||+. .|...|+||+-|..|++..
T Consensus 9 ~~W~v~~eg~~-ra~~~~~Tk~eAi~~Ar~~a~~--~~~~el~Ih~~dG~i~~~~ 60 (62)
T PF09954_consen 9 GGWAVKKEGAK-RASKTFDTKAEAIEAARELAKN--QGGGELIIHGRDGKIREER 60 (62)
T ss_pred CCceEEeCCCc-ccccccCcHHHHHHHHHHHHHh--CCCcEEEEECCCCeEEEee
Confidence 34766654332 1234456677999999999986 4579999999999988653
No 20
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=57.68 E-value=16 Score=30.29 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhccC
Q 021206 10 NIKLILLCAFFLLLLLFITKSTF 32 (316)
Q Consensus 10 ~~kl~~~~~~~~~~~~~~~r~~~ 32 (316)
.+--||+++.+++||+++|-++.
T Consensus 26 ~lMtILivLVIIiLlImlfqsSS 48 (85)
T PF10717_consen 26 TLMTILIVLVIIILLIMLFQSSS 48 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC
Confidence 34557777777777777775444
No 21
>PRK11901 hypothetical protein; Reviewed
Probab=55.40 E-value=45 Score=33.42 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCC
Q 021206 13 LILLCAFFLLLLLFITKSTFSSSSS 37 (316)
Q Consensus 13 l~~~~~~~~~~~~~~~r~~~~~~~~ 37 (316)
.|-||+|||||||+..-|-+-+++.
T Consensus 39 MiGiGilVLlLLIi~IgSALksP~~ 63 (327)
T PRK11901 39 MIGIGILVLLLLIIAIGSALKSPTE 63 (327)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCCC
Confidence 3556678888877777777755554
No 22
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=53.92 E-value=46 Score=28.96 Aligned_cols=59 Identities=22% Similarity=0.223 Sum_probs=41.0
Q ss_pred cCcHHHHHHHH-HHhhhcCCccEEEeccCchhH--hHhh-hccCCceeEeccChhHHHHHHhh
Q 021206 112 QQTVKEISVSL-RVLAQKSPCNFLVFGLGYDSL--MWSA-LNHGGRTLFLEEDKSWINQIKEK 170 (316)
Q Consensus 112 qqt~~Ei~~~~-~VL~~raPCNfLVFGLg~dsl--mW~a-LN~gGrTvFLEEd~~~i~~v~~~ 170 (316)
.||.+|++.+. .-+.-+....+|.+|-|.-.+ .++. +..+|+-+-+|-++..++.++++
T Consensus 22 ~~t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n 84 (198)
T PRK00377 22 PMTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRN 84 (198)
T ss_pred CCCHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 59999998765 223335667899999976554 3332 34557778889999988876654
No 23
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=52.07 E-value=1.2e+02 Score=24.99 Aligned_cols=14 Identities=29% Similarity=0.740 Sum_probs=12.0
Q ss_pred ccEEEEeCCCCCCC
Q 021206 228 WDLIMVDAPTGYHE 241 (316)
Q Consensus 228 WDvImVDgP~Gy~~ 241 (316)
.|+|+||.|.|...
T Consensus 45 yd~VIiD~p~~~~~ 58 (139)
T cd02038 45 YDYIIIDTGAGISD 58 (139)
T ss_pred CCEEEEECCCCCCH
Confidence 89999999988754
No 24
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=51.00 E-value=77 Score=31.89 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=18.4
Q ss_pred cccEEEEeCCCCCCCCCCCchhHHH
Q 021206 227 EWDLIMVDAPTGYHEAAPGRMTAIY 251 (316)
Q Consensus 227 eWDvImVDgP~Gy~~eaPGRM~AIy 251 (316)
..|+|+||.| |+.+.-+..|..+.
T Consensus 299 ~~DlVlIDt~-G~~~~d~~~~~~L~ 322 (424)
T PRK05703 299 DCDVILIDTA-GRSQRDKRLIEELK 322 (424)
T ss_pred CCCEEEEeCC-CCCCCCHHHHHHHH
Confidence 3599999998 88887777766553
No 25
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=49.45 E-value=13 Score=32.56 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=35.9
Q ss_pred cCcHHHHHHHHHHhhhcC-------CccEEEe-----ccCchh----HhHhhh-ccCCceeEeccChhH
Q 021206 112 QQTVKEISVSLRVLAQKS-------PCNFLVF-----GLGYDS----LMWSAL-NHGGRTLFLEEDKSW 163 (316)
Q Consensus 112 qqt~~Ei~~~~~VL~~ra-------PCNfLVF-----GLg~ds----lmW~aL-N~gGrTvFLEEd~~~ 163 (316)
.-..+|++.+.+.|..++ -.+.+.| |-|.-+ +.|+.- ++|-|++.+|-|+.-
T Consensus 9 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~ 77 (207)
T TIGR03018 9 SRIAEEFRKIKRPLLANAFSANRKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRR 77 (207)
T ss_pred CHHHHHHHHHHHHHHHhccccccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 446788888888887644 4776666 556665 344433 468899999999763
No 26
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=48.74 E-value=21 Score=27.37 Aligned_cols=86 Identities=23% Similarity=0.341 Sum_probs=50.1
Q ss_pred cEEEeccCchhHhHhhhccC-CceeEeccChhHHHHHHhhCCCcee-EEeeeccchhhHHHHHHHcCCCCCCCCCCCCCc
Q 021206 132 NFLVFGLGYDSLMWSALNHG-GRTLFLEEDKSWINQIKEKFPTLES-YHVEYDTKVNEADELMNAVGSDEECRVVTDPRF 209 (316)
Q Consensus 132 NfLVFGLg~dslmW~aLN~g-GrTvFLEEd~~~i~~v~~~~P~lea-y~V~Y~T~v~eA~~LL~~~r~~~~C~pv~~l~~ 209 (316)
.+|-.|-|--.++..++..+ .+.+-+|=|+..++..+.+.+.... ..++ -...++.++.
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~--~~~~D~~~~~----------------- 63 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVE--VIVGDARDLP----------------- 63 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEE--EEESHHHHHH-----------------
T ss_pred EEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEE--EEECchhhch-----------------
Confidence 46777888888888888888 7888899999988877766544221 0011 1112222221
Q ss_pred ccccccccCCCcccccccccEEEEeCCCCCCCCCCCch
Q 021206 210 SKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRM 247 (316)
Q Consensus 210 S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGRM 247 (316)
..+-+-.+|+|+-|-|-+.....+...
T Consensus 64 -----------~~~~~~~~D~Iv~npP~~~~~~~~~~~ 90 (117)
T PF13659_consen 64 -----------EPLPDGKFDLIVTNPPYGPRSGDKAAL 90 (117)
T ss_dssp -----------HTCTTT-EEEEEE--STTSBTT----G
T ss_pred -----------hhccCceeEEEEECCCCccccccchhh
Confidence 122245699999999998765444443
No 27
>PRK10905 cell division protein DamX; Validated
Probab=46.31 E-value=66 Score=32.34 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCC
Q 021206 14 ILLCAFFLLLLLFITKSTFSSSSS 37 (316)
Q Consensus 14 ~~~~~~~~~~~~~~~r~~~~~~~~ 37 (316)
|-||+|||||||+-.-|-+-+++.
T Consensus 2 iGiGilVLlLLIigIgSALkaP~~ 25 (328)
T PRK10905 2 MGVGILVLLLLIIGIGSALKAPST 25 (328)
T ss_pred cchhHHHHHHHHHHHhHhhcCCCC
Confidence 457888888888877766655443
No 28
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=44.53 E-value=20 Score=30.01 Aligned_cols=15 Identities=40% Similarity=0.817 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 021206 14 ILLCAFFLLLLLFIT 28 (316)
Q Consensus 14 ~~~~~~~~~~~~~~~ 28 (316)
|||.+++++||+|++
T Consensus 7 iii~~i~l~~~~~~~ 21 (130)
T PF12273_consen 7 IIIVAILLFLFLFYC 21 (130)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 29
>PHA02663 hypothetical protein; Provisional
Probab=40.11 E-value=22 Score=32.15 Aligned_cols=19 Identities=42% Similarity=0.602 Sum_probs=16.7
Q ss_pred CCCCCch-hHHHHHHHHHhh
Q 021206 241 EAAPGRM-TAIYTAGLMARN 259 (316)
Q Consensus 241 ~eaPGRM-~AIyTAavmARa 259 (316)
|.+|||| .||=--|.|.|-
T Consensus 82 ptspgrmvtavelcaqmgr~ 101 (172)
T PHA02663 82 PTSPGRMVTAVELCAQMGRL 101 (172)
T ss_pred CCCCcchhHHHHHHHHHHHH
Confidence 6799999 889889999885
No 30
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=39.76 E-value=7.7 Score=34.42 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=15.8
Q ss_pred ccCCCcccccccccEEEEeCCCC
Q 021206 216 LKGFPSEVYDVEWDLIMVDAPTG 238 (316)
Q Consensus 216 L~~LP~evYe~eWDvImVDgP~G 238 (316)
+..|=+.+-+.+||+|+||+|.+
T Consensus 102 ~~~l~~~l~~~~yD~IIiD~pp~ 124 (217)
T cd02035 102 LLAVFREFSEGLYDVIVFDTAPT 124 (217)
T ss_pred HHHHHHHHhcCCCCEEEECCCCc
Confidence 44444444444699999999985
No 31
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=39.67 E-value=1.8e+02 Score=22.52 Aligned_cols=80 Identities=15% Similarity=0.232 Sum_probs=44.9
Q ss_pred HHHHHHHHhhhcCCccEEEeccCchhHhHhhh-----ccCCceeEeccChhHHHHHHhhCCCceeEEeeeccchhhHHHH
Q 021206 117 EISVSLRVLAQKSPCNFLVFGLGYDSLMWSAL-----NHGGRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADEL 191 (316)
Q Consensus 117 Ei~~~~~VL~~raPCNfLVFGLg~dslmW~aL-----N~gGrTvFLEEd~~~i~~v~~~~P~leay~V~Y~T~v~eA~~L 191 (316)
+|..+++.|.+. .+++|||-|+.......+ ..|-...++.+...+........++--..-+...-.-.+.-++
T Consensus 2 ~i~~~~~~i~~~--~~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~~ 79 (139)
T cd05013 2 ALEKAVDLLAKA--RRIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEA 79 (139)
T ss_pred HHHHHHHHHHhC--CEEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHHH
Confidence 466677777664 579999999865544322 2344555555544444444434455444445554444455556
Q ss_pred HHHcCCC
Q 021206 192 MNAVGSD 198 (316)
Q Consensus 192 L~~~r~~ 198 (316)
++.++..
T Consensus 80 ~~~a~~~ 86 (139)
T cd05013 80 AEIAKER 86 (139)
T ss_pred HHHHHHc
Confidence 6555543
No 32
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=38.69 E-value=20 Score=30.16 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=13.7
Q ss_pred ccccEEEEeCCCCCCC
Q 021206 226 VEWDLIMVDAPTGYHE 241 (316)
Q Consensus 226 ~eWDvImVDgP~Gy~~ 241 (316)
-++|+|+||.|.|+.+
T Consensus 91 ~~~d~viiDtpp~~~~ 106 (179)
T cd03110 91 EGAELIIIDGPPGIGC 106 (179)
T ss_pred cCCCEEEEECcCCCcH
Confidence 4789999999999864
No 33
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=38.23 E-value=18 Score=34.31 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=13.8
Q ss_pred ccccEEEEeCCCCCCC
Q 021206 226 VEWDLIMVDAPTGYHE 241 (316)
Q Consensus 226 ~eWDvImVDgP~Gy~~ 241 (316)
-.||+|+||-|.|..|
T Consensus 116 ~~~~~iliD~P~g~~~ 131 (243)
T PF06564_consen 116 GPYDWILIDTPPGPSP 131 (243)
T ss_pred CCCCEEEEeCCCCCcH
Confidence 5699999999998765
No 34
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=36.63 E-value=9 Score=35.12 Aligned_cols=13 Identities=23% Similarity=0.705 Sum_probs=10.8
Q ss_pred cccccEEEEeCCC
Q 021206 225 DVEWDLIMVDAPT 237 (316)
Q Consensus 225 e~eWDvImVDgP~ 237 (316)
+.+||+|+||+|.
T Consensus 122 ~~~yD~VVvDtpP 134 (254)
T cd00550 122 EAEYDVVVFDTAP 134 (254)
T ss_pred cCCCCEEEECCCC
Confidence 4489999999865
No 35
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=35.89 E-value=24 Score=34.92 Aligned_cols=66 Identities=24% Similarity=0.521 Sum_probs=43.9
Q ss_pred ccccc---cEEEEeCCCCCCCCCCCchhHHHHHHHHHhhcCC-----CCceEEEecCChhHHHHHHHhhccccccccccc
Q 021206 224 YDVEW---DLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRES-----GETDVFVHDVDRVVEDKFSKAFLCEGYLKEQEG 295 (316)
Q Consensus 224 Ye~eW---DvImVDgP~Gy~~eaPGRM~AIyTAavmARar~~-----g~TdVfVHDVdR~VE~~fs~EFLC~~nLv~~~G 295 (316)
=+++| |+++||.|.|-..|- .|..--+|.+.| -.-+|.+-||+|++. +|++.-+.-.|
T Consensus 150 k~vdwg~lDyLviDtPPGtsDeh-------ls~~~~~~~~~gAviVTTPQ~vAl~Dv~K~i~-------fc~K~~I~ilG 215 (300)
T KOG3022|consen 150 KDVDWGELDYLVIDTPPGTSDEH-------LSLVQFLRESDGAVIVTTPQEVALQDVRKEID-------FCRKAGIPILG 215 (300)
T ss_pred hcCCCCCcCEEEEeCCCCCChhh-------hheeecccccCceEEEeCchhhhhHHHHhhhh-------hhhhcCCceEE
Confidence 36788 999999999987752 112222222222 135788999999998 78887777666
Q ss_pred ---ceeeeEec
Q 021206 296 ---RIRHFVVP 303 (316)
Q Consensus 296 ---rLwHF~Ip 303 (316)
+.-+|+-|
T Consensus 216 vVENMs~f~Cp 226 (300)
T KOG3022|consen 216 VVENMSGFVCP 226 (300)
T ss_pred EEeccccccCC
Confidence 45566655
No 36
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=35.71 E-value=16 Score=27.09 Aligned_cols=32 Identities=31% Similarity=0.621 Sum_probs=26.6
Q ss_pred cccccEEEEeCCCCCCCCCCCchhHHHHHHHHHhh
Q 021206 225 DVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARN 259 (316)
Q Consensus 225 e~eWDvImVDgP~Gy~~eaPGRM~AIyTAavmARa 259 (316)
+-.|=.|-|+|| |...+.||.|+.|+++ ||.+
T Consensus 3 ~~~~~~i~v~g~-g~~~~~~Gv~a~i~~~--La~~ 34 (65)
T PF13840_consen 3 EEDWAKISVVGP-GLRFDVPGVAAKIFSA--LAEA 34 (65)
T ss_dssp ESEEEEEEEEEE-CGTTTSHHHHHHHHHH--HHHT
T ss_pred cCCEEEEEEEcc-ccCCCcccHHHHHHHH--HHHC
Confidence 457889999999 7777899999999875 6665
No 37
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=35.66 E-value=20 Score=33.57 Aligned_cols=26 Identities=31% Similarity=0.563 Sum_probs=19.0
Q ss_pred ccccEEEEe-CCCCC---CCCCCCchhHHH
Q 021206 226 VEWDLIMVD-APTGY---HEAAPGRMTAIY 251 (316)
Q Consensus 226 ~eWDvImVD-gP~Gy---~~eaPGRM~AIy 251 (316)
-+||+|+|| +|+|. .=+.|.+|....
T Consensus 111 ~~yD~iVvDtaPtghtLrlL~lP~~l~~~l 140 (284)
T TIGR00345 111 NEFDVVIFDTAPTGHTLRLLQLPEVLSSFL 140 (284)
T ss_pred ccCCEEEECCCChHHHHHHHhhHHHHHHHH
Confidence 479999999 56776 446777776554
No 38
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=35.15 E-value=18 Score=30.34 Aligned_cols=12 Identities=17% Similarity=0.398 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 021206 15 LLCAFFLLLLLF 26 (316)
Q Consensus 15 ~~~~~~~~~~~~ 26 (316)
++.+++++++++
T Consensus 11 ~i~l~~~~~~~~ 22 (130)
T PF12273_consen 11 AILLFLFLFYCH 22 (130)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 39
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=33.41 E-value=4.1e+02 Score=24.95 Aligned_cols=117 Identities=26% Similarity=0.400 Sum_probs=72.4
Q ss_pred ChhHHHHHHHHHhCCCCccCcHHHHHHHHHHhhh-cCCccEEEeccCc-hhHhHhhhc--cCCceeEeccChhHHHHHHh
Q 021206 94 PPSLANALVHYATTNITPQQTVKEISVSLRVLAQ-KSPCNFLVFGLGY-DSLMWSALN--HGGRTLFLEEDKSWINQIKE 169 (316)
Q Consensus 94 P~~v~~AlvHYAtsn~tpqqt~~Ei~~~~~VL~~-raPCNfLVFGLg~-dslmW~aLN--~gGrTvFLEEd~~~i~~v~~ 169 (316)
+..+.+-+-.+|.-+..|.+- .|-......|.+ +.|=+.|=+|=+- =|.+|-|.. +.|+-+=+|=|+++++..++
T Consensus 24 ~~~~~~~~~e~a~~~~~pi~~-~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~ 102 (219)
T COG4122 24 PPALLAELEEFARENGVPIID-PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARE 102 (219)
T ss_pred CchHHHHHHHHhHhcCCCCCC-hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHH
Confidence 455666677777766777666 444444455544 7899999997532 356676655 46888889999988776554
Q ss_pred hC---CCceeEEeeeccchhhHHHHHHHcCCCCCCCCCCCCCcccccccccCCCcccccccccEEEEeCCCCCCCC
Q 021206 170 KF---PTLESYHVEYDTKVNEADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEA 242 (316)
Q Consensus 170 ~~---P~leay~V~Y~T~v~eA~~LL~~~r~~~~C~pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~e 242 (316)
.. .--+.-.+... .+|-+.|+. ...-.+|+|.||+=++.+|+
T Consensus 103 n~~~ag~~~~i~~~~~---gdal~~l~~----------------------------~~~~~fDliFIDadK~~yp~ 147 (219)
T COG4122 103 NLAEAGVDDRIELLLG---GDALDVLSR----------------------------LLDGSFDLVFIDADKADYPE 147 (219)
T ss_pred HHHHcCCcceEEEEec---CcHHHHHHh----------------------------ccCCCccEEEEeCChhhCHH
Confidence 32 11111111110 234444441 23456999999999988883
No 40
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=33.39 E-value=2e+02 Score=26.43 Aligned_cols=69 Identities=17% Similarity=0.318 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhhcCCccEEEe---ccCch-----hHhHhhhcc----CC-ceeEeccChhHHHHHHhhCCCceeEEeeec
Q 021206 116 KEISVSLRVLAQKSPCNFLVF---GLGYD-----SLMWSALNH----GG-RTLFLEEDKSWINQIKEKFPTLESYHVEYD 182 (316)
Q Consensus 116 ~Ei~~~~~VL~~raPCNfLVF---GLg~d-----slmW~aLN~----gG-rTvFLEEd~~~i~~v~~~~P~leay~V~Y~ 182 (316)
.|++.++.+|++-.+-.|+++ |-|-+ ++.|+-+++ .| .+||..-+.+..+..+...+.++-||+.|.
T Consensus 96 ~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~~~~~~~v~~~~~~~~ 175 (222)
T cd03287 96 VELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEILRRFEGSIRNYHMSYL 175 (222)
T ss_pred HHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHHHhcccCeEEEEEEEE
Confidence 599999999987666556654 43433 556766653 35 555555566655444343467899999997
Q ss_pred cc
Q 021206 183 TK 184 (316)
Q Consensus 183 T~ 184 (316)
..
T Consensus 176 ~~ 177 (222)
T cd03287 176 ES 177 (222)
T ss_pred Ee
Confidence 53
No 41
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=33.01 E-value=25 Score=33.59 Aligned_cols=46 Identities=20% Similarity=0.392 Sum_probs=25.2
Q ss_pred hccCCceeEeccChhH-HHHHHhh-----------CCCceeEEeeeccchhhHHHHHH
Q 021206 148 LNHGGRTLFLEEDKSW-INQIKEK-----------FPTLESYHVEYDTKVNEADELMN 193 (316)
Q Consensus 148 LN~gGrTvFLEEd~~~-i~~v~~~-----------~P~leay~V~Y~T~v~eA~~LL~ 193 (316)
-+.|-||+-+.=||.- ++.+-+. .|+|.+..+.-...+++.++-+.
T Consensus 26 A~~G~rtLlvS~Dpa~~L~d~l~~~~~~~~~~v~~~~~L~a~eid~~~~~~~~~~~~~ 83 (305)
T PF02374_consen 26 ARRGKRTLLVSTDPAHSLSDVLGQKLGGEPTKVEGVPNLSAMEIDPEAELEEYWEEVQ 83 (305)
T ss_dssp HHTTS-EEEEESSTTTHHHHHHTS--BSS-EEETTCSSEEEEE--HHHHHHHHHHHHH
T ss_pred hhCCCCeeEeecCCCccHHHHhCCcCCCCCeEecCCCCceeeecCHHHHHHHHHHHHH
Confidence 3567788888877763 3333322 26777777666655555554443
No 42
>KOG4417 consensus Predicted endonuclease [General function prediction only]
Probab=32.16 E-value=26 Score=33.89 Aligned_cols=25 Identities=36% Similarity=0.585 Sum_probs=18.6
Q ss_pred ccCCCcccccccccEEEEeC-----CCCCC
Q 021206 216 LKGFPSEVYDVEWDLIMVDA-----PTGYH 240 (316)
Q Consensus 216 L~~LP~evYe~eWDvImVDg-----P~Gy~ 240 (316)
|+..|.|=.+..=||||||| |+|+.
T Consensus 104 L~~v~~erh~fr~dvilvDGnG~lHprGfG 133 (261)
T KOG4417|consen 104 LKSVITERHEFRPDVILVDGNGELHPRGFG 133 (261)
T ss_pred HHhcccccCCccccEEEEcCCceEcccccc
Confidence 45666666677789999998 77764
No 43
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=31.88 E-value=68 Score=27.27 Aligned_cols=30 Identities=17% Similarity=0.147 Sum_probs=21.3
Q ss_pred CCchhHHHHHHHHHhhcCCCCceEEEecCChh
Q 021206 244 PGRMTAIYTAGLMARNRESGETDVFVHDVDRV 275 (316)
Q Consensus 244 PGRM~AIyTAavmARar~~g~TdVfVHDVdR~ 275 (316)
+|++++|++|---+.. .+.-.||||++|++
T Consensus 78 ~G~~~si~~gl~~~~~--~~~d~vlv~~~D~P 107 (190)
T TIGR03202 78 EGQAHSLKCGLRKAEA--MGADAVVILLADQP 107 (190)
T ss_pred hhHHHHHHHHHHHhcc--CCCCeEEEEeCCCC
Confidence 5899999987543322 23446999999985
No 44
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=31.86 E-value=26 Score=31.25 Aligned_cols=14 Identities=29% Similarity=0.752 Sum_probs=11.8
Q ss_pred ccccEEEEeCCCCC
Q 021206 226 VEWDLIMVDAPTGY 239 (316)
Q Consensus 226 ~eWDvImVDgP~Gy 239 (316)
-+||+|+||.|.+.
T Consensus 118 ~~yD~iiID~pp~l 131 (259)
T COG1192 118 DDYDYIIIDTPPSL 131 (259)
T ss_pred cCCCEEEECCCCch
Confidence 37999999999754
No 45
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=31.54 E-value=1.9e+02 Score=28.58 Aligned_cols=65 Identities=20% Similarity=0.294 Sum_probs=37.1
Q ss_pred ccEEEEeCCCCCCC--CCCCchhH--------HHHHHH--HHh-hcCCCCceEEEecCChhHHHHH-HHhhcccccccc
Q 021206 228 WDLIMVDAPTGYHE--AAPGRMTA--------IYTAGL--MAR-NRESGETDVFVHDVDRVVEDKF-SKAFLCEGYLKE 292 (316)
Q Consensus 228 WDvImVDgP~Gy~~--eaPGRM~A--------IyTAav--mAR-ar~~g~TdVfVHDVdR~VE~~f-s~EFLC~~nLv~ 292 (316)
=|+|+||.=.+.+| |--|+|+- ..+.++ |.. .++.+.|=||.-.+.-.+...| ..|.-+.++..+
T Consensus 134 ~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQvr~~ig~~~g~~e~~~GG~~L~ 212 (325)
T cd00983 134 VDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQLREKIGVMFGNPETTTGGNALK 212 (325)
T ss_pred CCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEccccccccccCCCccCCCchHHh
Confidence 48999999888875 44566621 112211 111 2345777788766655665556 445555555543
No 46
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=30.98 E-value=2e+02 Score=21.86 Aligned_cols=57 Identities=21% Similarity=0.260 Sum_probs=35.2
Q ss_pred CcHHHHHH-HHHHhhhcCCccEEEeccCchhHhHhhhcc--CCceeEeccChhHHHHHHh
Q 021206 113 QTVKEISV-SLRVLAQKSPCNFLVFGLGYDSLMWSALNH--GGRTLFLEEDKSWINQIKE 169 (316)
Q Consensus 113 qt~~Ei~~-~~~VL~~raPCNfLVFGLg~dslmW~aLN~--gGrTvFLEEd~~~i~~v~~ 169 (316)
|+..|+.. +...+.-...-++|-+|-|.-...+..... +++-+-+|-++..++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~ 61 (124)
T TIGR02469 2 MTKREVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIER 61 (124)
T ss_pred CchHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHH
Confidence 45566554 333332233347999999888877766653 4566777777776666554
No 47
>COG1278 CspC Cold shock proteins [Transcription]
Probab=30.60 E-value=30 Score=27.32 Aligned_cols=11 Identities=64% Similarity=0.930 Sum_probs=9.0
Q ss_pred CCCCceEEEec
Q 021206 261 ESGETDVFVHD 271 (316)
Q Consensus 261 ~~g~TdVfVHD 271 (316)
.+|.-|||||.
T Consensus 21 ~~G~~DvFVH~ 31 (67)
T COG1278 21 EDGGKDVFVHI 31 (67)
T ss_pred CCCCcCEEEEe
Confidence 35789999995
No 48
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=30.52 E-value=2.2e+02 Score=25.43 Aligned_cols=71 Identities=13% Similarity=0.132 Sum_probs=46.6
Q ss_pred HHhCCCCccCcHHHHHHHHHHhhh-cCCccEEEeccCchhHhHhhhc--cCCceeEeccChhHHHHHHhhCCCc
Q 021206 104 YATTNITPQQTVKEISVSLRVLAQ-KSPCNFLVFGLGYDSLMWSALN--HGGRTLFLEEDKSWINQIKEKFPTL 174 (316)
Q Consensus 104 YAtsn~tpqqt~~Ei~~~~~VL~~-raPCNfLVFGLg~dslmW~aLN--~gGrTvFLEEd~~~i~~v~~~~P~l 174 (316)
|.-.|.+.+.-.+++..+.++|.+ ..+-.+|-+|=|....+-.-.. +++.-+=+|-++..++.++++.|++
T Consensus 17 ~~~rn~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~ 90 (204)
T TIGR03587 17 YIDRNSRQSLVAAKLAMFARALNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNI 90 (204)
T ss_pred hhhccccHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCC
Confidence 443444333345677788888877 4566799998877654433333 4566666888999999888776643
No 49
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=30.14 E-value=31 Score=30.06 Aligned_cols=17 Identities=29% Similarity=0.669 Sum_probs=14.2
Q ss_pred ccccEEEEeCCCCCCCC
Q 021206 226 VEWDLIMVDAPTGYHEA 242 (316)
Q Consensus 226 ~eWDvImVDgP~Gy~~e 242 (316)
-..|+|+||+|.|+.+.
T Consensus 107 ~~yD~VIiD~p~~~~~~ 123 (251)
T TIGR01969 107 DDTDFLLIDAPAGLERD 123 (251)
T ss_pred hhCCEEEEeCCCccCHH
Confidence 36899999999998653
No 50
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=30.09 E-value=2.6e+02 Score=21.80 Aligned_cols=66 Identities=17% Similarity=0.308 Sum_probs=45.6
Q ss_pred hhHHHHHHhhCCCceeEEeeeccchhhHHHHHHHcCC-CCCCCCC-CCCCcccccccccCCCccccc--ccccEEEE
Q 021206 161 KSWINQIKEKFPTLESYHVEYDTKVNEADELMNAVGS-DEECRVV-TDPRFSKCRLALKGFPSEVYD--VEWDLIMV 233 (316)
Q Consensus 161 ~~~i~~v~~~~P~leay~V~Y~T~v~eA~~LL~~~r~-~~~C~pv-~~l~~S~CkLAL~~LP~evYe--~eWDvImV 233 (316)
+++++.+++..|++-+..+.|......+.++.+.+|. .|.+.=+ +.... +-.|.++.+ ..+|.+++
T Consensus 41 ~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~-------t~~~~~~l~~~~~~D~vv~ 110 (121)
T PF02310_consen 41 EELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHA-------TADPEEILREYPGIDYVVR 110 (121)
T ss_dssp HHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSS-------GHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCch-------hcChHHHhccCcCcceecC
Confidence 6778899999999999999999999999999997776 3443321 11111 133555544 45587665
No 51
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=29.59 E-value=94 Score=24.10 Aligned_cols=105 Identities=15% Similarity=0.295 Sum_probs=64.9
Q ss_pred EEEeccCchhH-hHhhhccCC-ceeEeccChhHHHHHHhhCCCceeEEeeeccchhhHHHHHHHcCCCCCCCCCCCCCcc
Q 021206 133 FLVFGLGYDSL-MWSALNHGG-RTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMNAVGSDEECRVVTDPRFS 210 (316)
Q Consensus 133 fLVFGLg~dsl-mW~aLN~gG-rTvFLEEd~~~i~~v~~~~P~leay~V~Y~T~v~eA~~LL~~~r~~~~C~pv~~l~~S 210 (316)
++|+|.|.-.. +-..|-.+| +-+.+|.|+..+..+++.. +++-|-. ..+-+-|.+ ++-.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-----~~~i~gd-~~~~~~l~~-a~i~------------ 61 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-----VEVIYGD-ATDPEVLER-AGIE------------ 61 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-----SEEEES--TTSHHHHHH-TTGG------------
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-----ccccccc-chhhhHHhh-cCcc------------
Confidence 58999987543 445677788 7999999999999998877 3344422 233333333 3221
Q ss_pred cccccccCCCcccccccccEEEEeCCCCCCCCCCCchhHHHHHHHHHhhcCCCCceEEEecCChhHHHHHHH
Q 021206 211 KCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRESGETDVFVHDVDRVVEDKFSK 282 (316)
Q Consensus 211 ~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGRM~AIyTAavmARar~~g~TdVfVHDVdR~VE~~fs~ 282 (316)
+=|.|++..+. . ..-..++.+||.. .+...|+++=-++.-++.+..
T Consensus 62 ----------------~a~~vv~~~~~---d------~~n~~~~~~~r~~-~~~~~ii~~~~~~~~~~~l~~ 107 (116)
T PF02254_consen 62 ----------------KADAVVILTDD---D------EENLLIALLAREL-NPDIRIIARVNDPENAELLRQ 107 (116)
T ss_dssp ----------------CESEEEEESSS---H------HHHHHHHHHHHHH-TTTSEEEEEESSHHHHHHHHH
T ss_pred ----------------ccCEEEEccCC---H------HHHHHHHHHHHHH-CCCCeEEEEECCHHHHHHHHH
Confidence 11345555442 1 4556666777763 355788888888877777644
No 52
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=29.24 E-value=3.7e+02 Score=24.74 Aligned_cols=69 Identities=19% Similarity=0.282 Sum_probs=35.1
Q ss_pred CCChhHHHHHHHHHhCCCCccCc--HHHH-HHHHHHhhhcCCccEEEeccCchh---HhHhhhccCCceeEeccCh
Q 021206 92 KTPPSLANALVHYATTNITPQQT--VKEI-SVSLRVLAQKSPCNFLVFGLGYDS---LMWSALNHGGRTLFLEEDK 161 (316)
Q Consensus 92 ~lP~~v~~AlvHYAtsn~tpqqt--~~Ei-~~~~~VL~~raPCNfLVFGLg~ds---lmW~aLN~gGrTvFLEEd~ 161 (316)
++|..|.+|+..+..+...+... .+|+ ..+++.+....+=..++.|=|.+. ++++-+++ |++|.+.++.
T Consensus 9 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~~~-g~~vl~~~~~ 83 (356)
T cd06451 9 NVPPRVLKAMNRPMLGHRSPEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLLEP-GDKVLVGVNG 83 (356)
T ss_pred CCCHHHHHHhCCCccCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhCCC-CCEEEEecCC
Confidence 67899999997654332222221 2222 223333333222335566655665 34444555 6777776543
No 53
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=28.69 E-value=17 Score=34.04 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=17.0
Q ss_pred ccCCCcccccccccEEEEeCCCCCC
Q 021206 216 LKGFPSEVYDVEWDLIMVDAPTGYH 240 (316)
Q Consensus 216 L~~LP~evYe~eWDvImVDgP~Gy~ 240 (316)
++.|=.++..-+.|+|+||+|.|-.
T Consensus 155 ~~qll~~~~~~~~D~vIID~PP~~g 179 (265)
T COG0489 155 MLQLLEDVLWGEYDYVIIDTPPGTG 179 (265)
T ss_pred HHHHHHHHhccCCCEEEEeCCCCch
Confidence 3444445555556899999999863
No 54
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=28.46 E-value=91 Score=22.99 Aligned_cols=34 Identities=12% Similarity=0.281 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCCCcccCCCCCCCCCCCCCC
Q 021206 15 LLCAFFLLLLLFITKSTFSSSSSSSSSSSQLQNPLSTNSTETPDD 59 (316)
Q Consensus 15 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (316)
.++++++.+-.+..-+.|-++|.. +.++.|.|||
T Consensus 10 ~i~~~lv~~Tgy~iYtaFGppSk~-----------LrDPfeeHeD 43 (43)
T PF02468_consen 10 FISCLLVSITGYAIYTAFGPPSKE-----------LRDPFEEHED 43 (43)
T ss_pred HHHHHHHHHHhhhhhheeCCCccc-----------cCCcccccCC
Confidence 333333333345556777666543 4566777775
No 55
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=28.32 E-value=46 Score=25.21 Aligned_cols=20 Identities=25% Similarity=0.715 Sum_probs=14.5
Q ss_pred CchHHHHHHHHHHHHHHHHH
Q 021206 8 PMNIKLILLCAFFLLLLLFI 27 (316)
Q Consensus 8 ~~~~kl~~~~~~~~~~~~~~ 27 (316)
++|.-||++|++...+++++
T Consensus 32 fvnf~lilicllli~iivml 51 (52)
T TIGR01294 32 FINFCLILICLLLICIIVML 51 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 46788889888777666554
No 56
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=28.05 E-value=36 Score=29.71 Aligned_cols=15 Identities=33% Similarity=0.899 Sum_probs=12.9
Q ss_pred cccEEEEeCCCCCCC
Q 021206 227 EWDLIMVDAPTGYHE 241 (316)
Q Consensus 227 eWDvImVDgP~Gy~~ 241 (316)
+.|+|+||+|.|...
T Consensus 111 ~~D~viiD~p~~~~~ 125 (261)
T TIGR01968 111 EFDYVIIDCPAGIES 125 (261)
T ss_pred hCCEEEEeCCCCcCH
Confidence 589999999998754
No 57
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=27.93 E-value=38 Score=26.91 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=16.3
Q ss_pred cEEEEeCCCCCCCCCCCchhHHHHHHHHHhh
Q 021206 229 DLIMVDAPTGYHEAAPGRMTAIYTAGLMARN 259 (316)
Q Consensus 229 DvImVDgP~Gy~~eaPGRM~AIyTAavmARa 259 (316)
|+|+||.|.|+.. ++..+++.+
T Consensus 44 D~IIiDtpp~~~~---------~~~~~l~~a 65 (106)
T cd03111 44 DYVVVDLGRSLDE---------VSLAALDQA 65 (106)
T ss_pred CEEEEeCCCCcCH---------HHHHHHHHc
Confidence 9999999998753 455666554
No 58
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=27.45 E-value=36 Score=28.22 Aligned_cols=15 Identities=33% Similarity=0.906 Sum_probs=13.1
Q ss_pred ccEEEEeCCCCCCCC
Q 021206 228 WDLIMVDAPTGYHEA 242 (316)
Q Consensus 228 WDvImVDgP~Gy~~e 242 (316)
-|+|+||+|.|....
T Consensus 95 yD~iiiD~~~~~~~~ 109 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP 109 (195)
T ss_dssp SSEEEEEECSSSSHH
T ss_pred ccceeecccccccHH
Confidence 899999999988654
No 59
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=27.04 E-value=92 Score=24.37 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=17.8
Q ss_pred CCCCCCCCchHHHHHHHHHHHHH-HHHH
Q 021206 1 MRPKPQSPMNIKLILLCAFFLLL-LLFI 27 (316)
Q Consensus 1 mr~k~~~~~~~kl~~~~~~~~~~-~~~~ 27 (316)
||.|....|.-=++||+++++|- |++.
T Consensus 1 ~r~k~~~~mtriVLLISfiIlfgRl~Y~ 28 (59)
T PF11119_consen 1 MRRKKNSRMTRIVLLISFIILFGRLIYS 28 (59)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 78788777766666777666655 4443
No 60
>PHA02518 ParA-like protein; Provisional
Probab=26.88 E-value=36 Score=28.81 Aligned_cols=14 Identities=21% Similarity=0.404 Sum_probs=11.8
Q ss_pred ccccEEEEeCCCCC
Q 021206 226 VEWDLIMVDAPTGY 239 (316)
Q Consensus 226 ~eWDvImVDgP~Gy 239 (316)
-.+|+|+||.|.|.
T Consensus 75 ~~~d~viiD~p~~~ 88 (211)
T PHA02518 75 SGYDYVVVDGAPQD 88 (211)
T ss_pred ccCCEEEEeCCCCc
Confidence 35799999999875
No 61
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=26.87 E-value=85 Score=27.54 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=24.4
Q ss_pred cHHHHHHHHHHhhhcCCccEEEeccCchh
Q 021206 114 TVKEISVSLRVLAQKSPCNFLVFGLGYDS 142 (316)
Q Consensus 114 t~~Ei~~~~~VL~~raPCNfLVFGLg~ds 142 (316)
...+......+|++..++.+.|+|+|.|.
T Consensus 100 ~~~~~~~~~~~l~~~~~~Dl~llGiG~dg 128 (232)
T cd01399 100 LEAECRRYEALIAEAGGIDLQLLGIGENG 128 (232)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCc
Confidence 45677778888988789999999999975
No 62
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=26.71 E-value=1.5e+02 Score=22.38 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=29.4
Q ss_pred cEEEeccCchhHhH--hhhccCCceeEeccChhHHHHHHhhC
Q 021206 132 NFLVFGLGYDSLMW--SALNHGGRTLFLEEDKSWINQIKEKF 171 (316)
Q Consensus 132 NfLVFGLg~dslmW--~aLN~gGrTvFLEEd~~~i~~v~~~~ 171 (316)
++|-.|-|.-.+.. +...+|++-+=+|-++..++.++++.
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~ 45 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERA 45 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHH
T ss_pred EEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 46777766555544 44448899999999999998888665
No 63
>PRK07402 precorrin-6B methylase; Provisional
Probab=26.47 E-value=4.2e+02 Score=22.84 Aligned_cols=60 Identities=20% Similarity=0.288 Sum_probs=44.0
Q ss_pred cCcHHHHHH-HHHHhhhcCCccEEEeccCchhH--hHhhhccCCceeEeccChhHHHHHHhhC
Q 021206 112 QQTVKEISV-SLRVLAQKSPCNFLVFGLGYDSL--MWSALNHGGRTLFLEEDKSWINQIKEKF 171 (316)
Q Consensus 112 qqt~~Ei~~-~~~VL~~raPCNfLVFGLg~dsl--mW~aLN~gGrTvFLEEd~~~i~~v~~~~ 171 (316)
.+|..|++. +.+.|.-+..-.+|=+|=|.-.+ .++..+++|+-+-+|=|+..++.++++.
T Consensus 22 p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~ 84 (196)
T PRK07402 22 PLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNC 84 (196)
T ss_pred CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH
Confidence 488999996 56777555556788887766554 4444667888888999999988777653
No 64
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=25.73 E-value=1.2e+02 Score=26.26 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=23.9
Q ss_pred CCccEEEeccCchhHhHhhhccCCceeEeccC
Q 021206 129 SPCNFLVFGLGYDSLMWSALNHGGRTLFLEED 160 (316)
Q Consensus 129 aPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd 160 (316)
..+.+++.|=|.|+..|.--++.|...|.|=|
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD 109 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVD 109 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeC
Confidence 34599999999999999999987777777744
No 65
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=25.68 E-value=70 Score=31.63 Aligned_cols=32 Identities=25% Similarity=0.628 Sum_probs=27.4
Q ss_pred hHhhhccCCceeEe------ccChhHHHHHHhhCCCce
Q 021206 144 MWSALNHGGRTLFL------EEDKSWINQIKEKFPTLE 175 (316)
Q Consensus 144 mW~aLN~gGrTvFL------EEd~~~i~~v~~~~P~le 175 (316)
.|..|++||+-||- ||++.=|+.+.++||+.+
T Consensus 354 a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~ 391 (426)
T TIGR00563 354 IWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHPDFP 391 (426)
T ss_pred HHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCCCCe
Confidence 46779999998876 699999999999999864
No 66
>PRK13242 ureA urease subunit gamma; Provisional
Probab=25.26 E-value=31 Score=29.40 Aligned_cols=14 Identities=21% Similarity=0.142 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhcCC
Q 021206 249 AIYTAGLMARNRES 262 (316)
Q Consensus 249 AIyTAavmARar~~ 262 (316)
-||+||.+||.|+.
T Consensus 12 ~i~~a~~lA~~R~~ 25 (100)
T PRK13242 12 VIHMLSDVALKRKN 25 (100)
T ss_pred HHHHHHHHHHHHHH
Confidence 49999999999874
No 67
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=24.49 E-value=53 Score=24.89 Aligned_cols=20 Identities=25% Similarity=0.700 Sum_probs=13.7
Q ss_pred CchHHHHHHHHHHHHHHHHH
Q 021206 8 PMNIKLILLCAFFLLLLLFI 27 (316)
Q Consensus 8 ~~~~kl~~~~~~~~~~~~~~ 27 (316)
++|+-||++|++...+++++
T Consensus 32 fvnfclilicllli~iiv~l 51 (52)
T PF04272_consen 32 FVNFCLILICLLLICIIVML 51 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35778888888766655543
No 68
>PF14851 FAM176: FAM176 family
Probab=24.38 E-value=3.7e+02 Score=24.30 Aligned_cols=15 Identities=20% Similarity=0.425 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhccCC
Q 021206 19 FFLLLLLFITKSTFS 33 (316)
Q Consensus 19 ~~~~~~~~~~r~~~~ 33 (316)
|++.|.+++.|-+..
T Consensus 34 LlLtLcllV~risc~ 48 (153)
T PF14851_consen 34 LLLTLCLLVIRISCR 48 (153)
T ss_pred HHHHHHHHHhhheee
Confidence 444555566687773
No 69
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=24.33 E-value=68 Score=25.50 Aligned_cols=19 Identities=26% Similarity=0.488 Sum_probs=15.1
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 021206 9 MNIKLILLCAFFLLLLLFI 27 (316)
Q Consensus 9 ~~~kl~~~~~~~~~~~~~~ 27 (316)
|.-|||+|+++++.+..++
T Consensus 1 MA~Kl~vialLC~aLva~v 19 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAIV 19 (65)
T ss_pred CcchhhHHHHHHHHHHHHH
Confidence 4569999999998877754
No 70
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=24.11 E-value=43 Score=28.09 Aligned_cols=15 Identities=33% Similarity=0.596 Sum_probs=12.8
Q ss_pred ccccEEEEeCCCCCC
Q 021206 226 VEWDLIMVDAPTGYH 240 (316)
Q Consensus 226 ~eWDvImVDgP~Gy~ 240 (316)
-+-|+|+||+|.|+.
T Consensus 66 ~~yD~VIiD~pp~~~ 80 (169)
T cd02037 66 GELDYLVIDMPPGTG 80 (169)
T ss_pred CCCCEEEEeCCCCCc
Confidence 468999999999864
No 71
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=23.65 E-value=52 Score=27.36 Aligned_cols=16 Identities=19% Similarity=0.534 Sum_probs=12.9
Q ss_pred ccccEEEEeCCCCCCC
Q 021206 226 VEWDLIMVDAPTGYHE 241 (316)
Q Consensus 226 ~eWDvImVDgP~Gy~~ 241 (316)
.+-|+|+||||.|...
T Consensus 98 ~~~D~viid~~g~~~~ 113 (166)
T TIGR00347 98 QKYDFVLVEGAGGLCV 113 (166)
T ss_pred hcCCEEEEEcCCcccc
Confidence 4579999999988654
No 72
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.64 E-value=70 Score=27.74 Aligned_cols=8 Identities=25% Similarity=0.185 Sum_probs=4.2
Q ss_pred HHHHHHHH
Q 021206 11 IKLILLCA 18 (316)
Q Consensus 11 ~kl~~~~~ 18 (316)
+=+|++|+
T Consensus 66 i~~Ii~gv 73 (122)
T PF01102_consen 66 IIGIIFGV 73 (122)
T ss_dssp HHHHHHHH
T ss_pred eeehhHHH
Confidence 44555555
No 73
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=23.59 E-value=1.8e+02 Score=25.76 Aligned_cols=84 Identities=20% Similarity=0.213 Sum_probs=42.3
Q ss_pred cccccccccEEEEeCCCCCCCC-CCCchhHHHHHHHHHhhcCCCCceEEEecCChhHHHHHH-Hhhccccccc----ccc
Q 021206 221 SEVYDVEWDLIMVDAPTGYHEA-APGRMTAIYTAGLMARNRESGETDVFVHDVDRVVEDKFS-KAFLCEGYLK----EQE 294 (316)
Q Consensus 221 ~evYe~eWDvImVDgP~Gy~~e-aPGRM~AIyTAavmARar~~g~TdVfVHDVdR~VE~~fs-~EFLC~~nLv----~~~ 294 (316)
+.+-+.+=|+|+||.|+..... .+..|..+.. .+....+ .|.|=+++++-....++... .+|++++-.. +..
T Consensus 114 ~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~-~l~~l~~-~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~~~~~ 191 (234)
T PRK06067 114 EFIKSKREDVIIIDSLTIFATYAEEDDILNFLT-EAKNLVD-LGKTILITLHPYAFSEELLSRIRSICDVYLKLRAEQIG 191 (234)
T ss_pred HHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHH-HHHHHHh-CCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEeeccC
Confidence 3444446689999999965322 2222222222 1222122 35566777665544444333 3788875431 123
Q ss_pred cce-eeeEecCCC
Q 021206 295 GRI-RHFVVPSHR 306 (316)
Q Consensus 295 GrL-wHF~Ip~~~ 306 (316)
|++ ++=.|..+|
T Consensus 192 ~~~~r~l~i~K~R 204 (234)
T PRK06067 192 GRYVKVLEVVKLR 204 (234)
T ss_pred CEEeEEEEEEhhc
Confidence 444 445666665
No 74
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=23.38 E-value=3.2e+02 Score=25.88 Aligned_cols=47 Identities=15% Similarity=0.019 Sum_probs=30.5
Q ss_pred HHhhhcCCccEEEec--cCchhHhHhhhccCCceeEeccChhHHHHHHhhC
Q 021206 123 RVLAQKSPCNFLVFG--LGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKF 171 (316)
Q Consensus 123 ~VL~~raPCNfLVFG--Lg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~ 171 (316)
+.++...+-.+|=.| -|.-++.++. +|++.+-+|-++.-++..+++.
T Consensus 167 ~~l~~~~~~~VLDl~cG~G~~sl~la~--~~~~V~gvD~s~~av~~A~~n~ 215 (315)
T PRK03522 167 DWVRELPPRSMWDLFCGVGGFGLHCAT--PGMQLTGIEISAEAIACAKQSA 215 (315)
T ss_pred HHHHhcCCCEEEEccCCCCHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHH
Confidence 333333455677664 4555555544 6788999999999988777553
No 75
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=23.37 E-value=5.2e+02 Score=23.93 Aligned_cols=35 Identities=17% Similarity=0.343 Sum_probs=23.8
Q ss_pred cccCCCcccccccccEEEEeCCCCCCCCCCCchhHHHH
Q 021206 215 ALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYT 252 (316)
Q Consensus 215 AL~~LP~evYe~eWDvImVDgP~Gy~~eaPGRM~AIyT 252 (316)
++..+|..+-+...|++++++-+.+.+ || +|.|++
T Consensus 179 ~~~~~~~~~~~~~~d~~~~s~~K~~~~--~g-~g~~~~ 213 (373)
T cd06453 179 SAGHMPVDVQDLGCDFLAFSGHKMLGP--TG-IGVLYG 213 (373)
T ss_pred hcCceeeeccccCCCEEEeccccccCC--CC-cEEEEE
Confidence 334455555566789999999898776 54 666654
No 76
>cd00390 Urease_gamma Urease gamma-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=22.89 E-value=35 Score=28.82 Aligned_cols=14 Identities=43% Similarity=0.577 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhcCC
Q 021206 249 AIYTAGLMARNRES 262 (316)
Q Consensus 249 AIyTAavmARar~~ 262 (316)
-||+||.|||.|+.
T Consensus 9 ~i~~a~~lA~~R~~ 22 (96)
T cd00390 9 LIFTAAELARKRLA 22 (96)
T ss_pred HHHHHHHHHHHHHH
Confidence 49999999999864
No 77
>PRK11670 antiporter inner membrane protein; Provisional
Probab=22.61 E-value=53 Score=32.29 Aligned_cols=35 Identities=26% Similarity=0.300 Sum_probs=21.6
Q ss_pred CCccEEEe-----ccCchhH---hHhhh-ccCCceeEeccChhH
Q 021206 129 SPCNFLVF-----GLGYDSL---MWSAL-NHGGRTLFLEEDKSW 163 (316)
Q Consensus 129 aPCNfLVF-----GLg~dsl---mW~aL-N~gGrTvFLEEd~~~ 163 (316)
..++.+.+ |.|.-+. +-.+| ..|=|++.+|-|+.-
T Consensus 105 ~~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qg 148 (369)
T PRK11670 105 GVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYG 148 (369)
T ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 35687766 5665543 22334 345589999988764
No 78
>PRK13241 ureA urease subunit gamma; Provisional
Probab=22.39 E-value=37 Score=28.93 Aligned_cols=14 Identities=43% Similarity=0.719 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhcCC
Q 021206 249 AIYTAGLMARNRES 262 (316)
Q Consensus 249 AIyTAavmARar~~ 262 (316)
-||+||.|||.|+.
T Consensus 12 ~i~~a~~lA~~R~~ 25 (100)
T PRK13241 12 LIFTAALLAERRKA 25 (100)
T ss_pred HHHHHHHHHHHHHH
Confidence 49999999999874
No 79
>PHA02913 TGF-beta-like protein; Provisional
Probab=22.34 E-value=45 Score=30.61 Aligned_cols=16 Identities=31% Similarity=0.557 Sum_probs=13.4
Q ss_pred ccccccEEEEeCCCCCCC
Q 021206 224 YDVEWDLIMVDAPTGYHE 241 (316)
Q Consensus 224 Ye~eWDvImVDgP~Gy~~ 241 (316)
=|+-||+|+ +|+||.+
T Consensus 88 ~dIGWdWII--APkgY~A 103 (172)
T PHA02913 88 ADMGMKWIL--KPEGTHA 103 (172)
T ss_pred hccCcceEe--cCCCeee
Confidence 488999887 9999964
No 80
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=22.15 E-value=87 Score=25.98 Aligned_cols=81 Identities=16% Similarity=0.237 Sum_probs=43.0
Q ss_pred cccccEEEEeCCCCCCCCCCCchhHHHHHHHHHhhcCCCCceEEEecCChhH---HHHHHHhhcccccc----cccccce
Q 021206 225 DVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRESGETDVFVHDVDRVV---EDKFSKAFLCEGYL----KEQEGRI 297 (316)
Q Consensus 225 e~eWDvImVDgP~Gy~~eaPGRM~AIyTAavmARar~~g~TdVfVHDVdR~V---E~~fs~EFLC~~nL----v~~~GrL 297 (316)
+.+=|+|+||.|..+......+....+ ...+..-++.|.|=|++....+.. +.....+++|+.-+ ++..|++
T Consensus 93 ~~~~~~lviD~~~~~~~~~~~~~~~~i-~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~~~~~~~~~ 171 (187)
T cd01124 93 EFKAKRVVIDSVSGLLLMEQSTARLEI-RRLLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLRLDEEGGRL 171 (187)
T ss_pred HhCCCEEEEeCcHHHhhcChHHHHHHH-HHHHHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEEEEccCCEE
Confidence 344589999999987553212211111 122323233467767776554432 23344678888654 2234554
Q ss_pred -eeeEecCCC
Q 021206 298 -RHFVVPSHR 306 (316)
Q Consensus 298 -wHF~Ip~~~ 306 (316)
+.-+|..+|
T Consensus 172 ~r~l~i~K~R 181 (187)
T cd01124 172 RRSLSVVKMR 181 (187)
T ss_pred EEEEEEEEcc
Confidence 446666665
No 81
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=21.84 E-value=51 Score=28.77 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=11.7
Q ss_pred ccEEEEeCCCCCCC
Q 021206 228 WDLIMVDAPTGYHE 241 (316)
Q Consensus 228 WDvImVDgP~Gy~~ 241 (316)
.|+|+||.|.|..+
T Consensus 115 ~D~viiD~pp~~~~ 128 (246)
T TIGR03371 115 RDWVLIDVPRGPSP 128 (246)
T ss_pred CCEEEEECCCCchH
Confidence 49999999998654
No 82
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=21.14 E-value=88 Score=22.76 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=37.2
Q ss_pred EEEEeCCCCCCCCCCCchhHHHHHHHHHhhcCC-CCceEEEecCChh
Q 021206 230 LIMVDAPTGYHEAAPGRMTAIYTAGLMARNRES-GETDVFVHDVDRV 275 (316)
Q Consensus 230 vImVDgP~Gy~~eaPGRM~AIyTAavmARar~~-g~TdVfVHDVdR~ 275 (316)
+|-|+-..|..+|.=.+++.-.|.++..--... -.+.|.++|+++.
T Consensus 3 ~i~i~~~~Grs~EqK~~L~~~it~a~~~~~~~p~~~v~V~i~ev~~~ 49 (60)
T PRK02289 3 FVRIDLFEGRSQEQKNALAREVTEVVSRIAKAPKEAIHVFINDMPEG 49 (60)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeChh
Confidence 467787788889999999988898888776443 4699999999873
No 83
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=21.11 E-value=62 Score=26.48 Aligned_cols=12 Identities=42% Similarity=0.969 Sum_probs=10.7
Q ss_pred cEEEEeCCCCCC
Q 021206 229 DLIMVDAPTGYH 240 (316)
Q Consensus 229 DvImVDgP~Gy~ 240 (316)
|+|+||+|.|..
T Consensus 64 d~viiD~p~~~~ 75 (179)
T cd02036 64 DYILIDSPAGIE 75 (179)
T ss_pred CEEEEECCCCCc
Confidence 999999998864
No 84
>COG0831 UreA Urea amidohydrolase (urease) gamma subunit [Amino acid transport and metabolism]
Probab=20.93 E-value=43 Score=28.51 Aligned_cols=14 Identities=43% Similarity=0.660 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhcCC
Q 021206 249 AIYTAGLMARNRES 262 (316)
Q Consensus 249 AIyTAavmARar~~ 262 (316)
-||+||.+||.|+.
T Consensus 12 li~~a~~lA~rR~~ 25 (100)
T COG0831 12 LIFTAAELARRRKA 25 (100)
T ss_pred HHHHHHHHHHHHHh
Confidence 48999999999874
No 85
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=20.83 E-value=1e+02 Score=33.43 Aligned_cols=38 Identities=18% Similarity=0.368 Sum_probs=26.2
Q ss_pred ccccEEEEeCCCCCCCCCCCchhHHHHHHHHHhhcCCCCceEEEecCChh
Q 021206 226 VEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRESGETDVFVHDVDRV 275 (316)
Q Consensus 226 ~eWDvImVDgP~Gy~~eaPGRM~AIyTAavmARar~~g~TdVfVHDVdR~ 275 (316)
.+||||+|=|.- +++= |.+|-+|-|-.|.+++|..|--
T Consensus 3 ~~~DVIVIGgGH----------AG~E--AA~AaARmG~ktlLlT~~~dti 40 (621)
T COG0445 3 KEYDVIVIGGGH----------AGVE--AALAAARMGAKTLLLTLNLDTI 40 (621)
T ss_pred CCCceEEECCCc----------cchH--HHHhhhccCCeEEEEEcCCCce
Confidence 459999998765 2332 3344454466899999999854
No 86
>TIGR00193 urease_gam urease, gamma subunit. Nomenclature for the various subunits of urease in Helicobacter differs from nomenclature in most other species.
Probab=20.71 E-value=43 Score=28.63 Aligned_cols=14 Identities=29% Similarity=0.648 Sum_probs=12.1
Q ss_pred HHHHHHHHHhhcCC
Q 021206 249 AIYTAGLMARNRES 262 (316)
Q Consensus 249 AIyTAavmARar~~ 262 (316)
-||+||.|||.|+.
T Consensus 12 ~i~~a~~lA~rR~~ 25 (102)
T TIGR00193 12 MLFYAGELAKKRKA 25 (102)
T ss_pred HHHHHHHHHHHHHH
Confidence 49999999999864
No 87
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=20.68 E-value=3.1e+02 Score=27.46 Aligned_cols=81 Identities=14% Similarity=0.163 Sum_probs=52.0
Q ss_pred CCccEEEeccCchhHhHhhhccCC-ceeEeccChhHHHHHHhhC--CCceeEEeeeccchhhHHHHHHHcCCCCCCCCCC
Q 021206 129 SPCNFLVFGLGYDSLMWSALNHGG-RTLFLEEDKSWINQIKEKF--PTLESYHVEYDTKVNEADELMNAVGSDEECRVVT 205 (316)
Q Consensus 129 aPCNfLVFGLg~dslmW~aLN~gG-rTvFLEEd~~~i~~v~~~~--P~leay~V~Y~T~v~eA~~LL~~~r~~~~C~pv~ 205 (316)
...++|=.|=|.-....+++..|. ..+.+|-++..++.+++.. ++++.- +.+--..++.+.|+.+...
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~--~v~~i~~D~~~~l~~~~~~------- 290 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLS--KAEFVRDDVFKLLRTYRDR------- 290 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCC--cEEEEEccHHHHHHHHHhc-------
Confidence 467899887777777777666554 7899999999998877653 333210 1122234566666532210
Q ss_pred CCCcccccccccCCCcccccccccEEEEeCCC
Q 021206 206 DPRFSKCRLALKGFPSEVYDVEWDLIMVDAPT 237 (316)
Q Consensus 206 ~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~ 237 (316)
+-.+|+|++|-|.
T Consensus 291 -------------------~~~fDlVilDPP~ 303 (396)
T PRK15128 291 -------------------GEKFDVIVMDPPK 303 (396)
T ss_pred -------------------CCCCCEEEECCCC
Confidence 1258999999995
No 88
>PF12317 IFT46_B_C: Intraflagellar transport complex B protein 46 C terminal; InterPro: IPR022088 This entry represents proteins is found in eukaryotes. Proteins are typically between 298 and 416 amino acids in length. It is thought to be a flagellar protein of complex B and like all IFT proteins, it is required for transport of IFT particles into the flagella [].
Probab=20.53 E-value=74 Score=30.23 Aligned_cols=33 Identities=27% Similarity=0.499 Sum_probs=30.4
Q ss_pred hhHHHHHHhhCCCceeEEeeeccchhhHHHHHH
Q 021206 161 KSWINQIKEKFPTLESYHVEYDTKVNEADELMN 193 (316)
Q Consensus 161 ~~~i~~v~~~~P~leay~V~Y~T~v~eA~~LL~ 193 (316)
..||+.|++-|-.=-.+.|.|+..+-+-+.||+
T Consensus 119 d~WI~~i~elHr~kp~~tV~Y~~~mPdId~LMq 151 (214)
T PF12317_consen 119 DKWIESIEELHRSKPPPTVHYSKPMPDIDTLMQ 151 (214)
T ss_pred HHHHHHHHHHHhcCCCCceecCCCCCCHHHHHH
Confidence 579999999998888899999999999999998
No 89
>PRK06141 ornithine cyclodeaminase; Validated
Probab=20.23 E-value=2.8e+02 Score=26.37 Aligned_cols=63 Identities=17% Similarity=0.217 Sum_probs=41.6
Q ss_pred CCCccCcHHHHHHHHHHhhhcCCccEEEeccCchhHhHh-hhc--cCCceeEec-cChhHHHHHHhh
Q 021206 108 NITPQQTVKEISVSLRVLAQKSPCNFLVFGLGYDSLMWS-ALN--HGGRTLFLE-EDKSWINQIKEK 170 (316)
Q Consensus 108 n~tpqqt~~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~-aLN--~gGrTvFLE-Ed~~~i~~v~~~ 170 (316)
.+|.-.|.+==.+..+.|.++.+-+++|||.|.+...=. +++ .++++|++- -+++-..++.++
T Consensus 103 ~lT~~RTaa~sala~~~La~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~ 169 (314)
T PRK06141 103 ELTARRTAAASALAASYLARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAE 169 (314)
T ss_pred chhcchhHHHHHHHHHHhCCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHH
Confidence 345556666666777889888899999999999876543 333 467888774 233334444333
No 90
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=20.14 E-value=65 Score=29.19 Aligned_cols=48 Identities=17% Similarity=0.188 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhh---cCCccEEEe-----ccCchhH----hHhhhccCCceeEeccChh
Q 021206 115 VKEISVSLRVLAQ---KSPCNFLVF-----GLGYDSL----MWSALNHGGRTLFLEEDKS 162 (316)
Q Consensus 115 ~~Ei~~~~~VL~~---raPCNfLVF-----GLg~dsl----mW~aLN~gGrTvFLEEd~~ 162 (316)
.++++.+..-|.. ..+++.+.| |-|.-+. .++.-..|-+++.+|-|..
T Consensus 84 ~e~~~~l~~~l~~~~~~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~ 143 (274)
T TIGR03029 84 VEALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLR 143 (274)
T ss_pred HHHHHHHHHHhhhhccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 3456666665543 356776665 4455542 2332234668999998753
No 91
>smart00204 TGFB Transforming growth factor-beta (TGF-beta) family. Family members are active as disulphide-linked homo- or heterodimers. TGFB is a multifunctional peptide that controls proliferation, differentiation, and other functions in many cell types.
Probab=20.12 E-value=50 Score=26.91 Aligned_cols=18 Identities=44% Similarity=1.051 Sum_probs=14.0
Q ss_pred ccccccc-cEEEEeCCCCCCC
Q 021206 222 EVYDVEW-DLIMVDAPTGYHE 241 (316)
Q Consensus 222 evYe~eW-DvImVDgP~Gy~~ 241 (316)
.|=|+-| |+|+ +|+||.+
T Consensus 9 dF~~iGW~~wIi--aP~~y~a 27 (102)
T smart00204 9 DFKDLGWDDWII--APKGYNA 27 (102)
T ss_pred EHhhcCCcceEE--cCCceee
Confidence 4558899 7887 8999965
No 92
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=20.08 E-value=2.5e+02 Score=23.99 Aligned_cols=27 Identities=15% Similarity=0.379 Sum_probs=17.1
Q ss_pred chHHHHHHHHHHHHHHHHHHh-ccCCCC
Q 021206 9 MNIKLILLCAFFLLLLLFITK-STFSSS 35 (316)
Q Consensus 9 ~~~kl~~~~~~~~~~~~~~~r-~~~~~~ 35 (316)
.+.=++.+.++++.+++|++| +++.+.
T Consensus 53 ~~~~~~~~~w~~~A~~ly~~RP~s~R~~ 80 (103)
T PF11027_consen 53 NSMFMMMMLWMVLAMALYLLRPSSLRSR 80 (103)
T ss_pred ccHHHHHHHHHHHHHHHHHcCchhhcCC
Confidence 445566666677777788887 444444
Done!