Query 021206
Match_columns 316
No_of_seqs 93 out of 95
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 14:17:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021206.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021206hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cvo_A Methyltransferase-like 96.7 0.005 1.7E-07 54.3 8.4 165 111-306 14-186 (202)
2 3c6k_A Spermine synthase; sper 93.3 0.14 4.9E-06 49.4 6.9 152 128-305 204-377 (381)
3 2qfm_A Spermine synthase; sper 92.1 0.27 9.2E-06 47.2 6.9 148 128-305 187-360 (364)
4 3gjy_A Spermidine synthase; AP 87.1 1.1 3.9E-05 41.7 6.6 81 130-240 90-172 (317)
5 3u81_A Catechol O-methyltransf 85.9 2.7 9.2E-05 34.8 7.6 77 94-170 22-102 (221)
6 3o4f_A Spermidine synthase; am 85.6 1.9 6.5E-05 40.0 7.3 50 123-172 77-128 (294)
7 2b2c_A Spermidine synthase; be 82.6 4.6 0.00016 36.8 8.3 49 125-173 104-154 (314)
8 2gpy_A O-methyltransferase; st 82.5 6.5 0.00022 32.5 8.6 77 94-170 19-97 (233)
9 3cbg_A O-methyltransferase; cy 81.9 6.8 0.00023 33.0 8.6 77 94-170 35-116 (232)
10 3c3p_A Methyltransferase; NP_9 80.7 8.8 0.0003 31.2 8.6 77 94-170 21-100 (210)
11 2hnk_A SAM-dependent O-methylt 80.2 8.5 0.00029 32.2 8.6 77 94-170 23-104 (239)
12 3dr5_A Putative O-methyltransf 78.6 11 0.00037 32.0 8.8 77 94-170 18-100 (221)
13 3adn_A Spermidine synthase; am 77.4 6.5 0.00022 35.4 7.5 49 124-172 78-128 (294)
14 3ntv_A MW1564 protein; rossman 75.1 7.6 0.00026 32.6 6.8 76 95-170 37-114 (232)
15 2avd_A Catechol-O-methyltransf 74.7 15 0.00052 29.9 8.4 77 94-170 32-113 (229)
16 3duw_A OMT, O-methyltransferas 74.3 16 0.00055 29.7 8.5 76 95-170 22-102 (223)
17 3c3y_A Pfomt, O-methyltransfer 74.3 17 0.00057 30.8 8.8 78 94-171 33-115 (237)
18 1mjf_A Spermidine synthase; sp 73.6 15 0.00052 32.2 8.7 46 126-171 72-118 (281)
19 2o07_A Spermidine synthase; st 73.5 6 0.00021 35.6 6.2 46 127-172 93-140 (304)
20 2pt6_A Spermidine synthase; tr 73.4 14 0.00047 33.5 8.6 49 125-173 112-162 (321)
21 1sui_A Caffeoyl-COA O-methyltr 73.3 14 0.00048 31.8 8.2 78 94-171 42-124 (247)
22 3tfw_A Putative O-methyltransf 67.5 25 0.00086 29.8 8.5 76 95-170 27-107 (248)
23 3tr6_A O-methyltransferase; ce 62.2 40 0.0014 27.3 8.4 77 94-170 26-108 (225)
24 1l3i_A Precorrin-6Y methyltran 61.3 28 0.00097 26.7 7.0 67 104-170 7-74 (192)
25 1vl5_A Unknown conserved prote 57.9 17 0.00057 30.4 5.5 65 104-170 14-78 (260)
26 3e05_A Precorrin-6Y C5,15-meth 55.2 25 0.00084 28.3 5.9 60 111-170 21-83 (204)
27 2yxd_A Probable cobalt-precorr 50.9 58 0.002 24.8 7.2 59 112-170 18-76 (183)
28 3hm2_A Precorrin-6Y C5,15-meth 49.1 46 0.0016 25.5 6.4 60 111-170 6-68 (178)
29 2yvl_A TRMI protein, hypotheti 48.6 45 0.0016 27.2 6.6 59 112-170 74-132 (248)
30 3pfg_A N-methyltransferase; N, 48.1 70 0.0024 26.6 7.8 60 115-174 34-95 (263)
31 2cmg_A Spermidine synthase; tr 47.7 33 0.0011 30.2 6.0 49 125-173 68-116 (262)
32 3cgg_A SAM-dependent methyltra 47.4 71 0.0024 24.5 7.2 46 128-173 45-90 (195)
33 3i9f_A Putative type 11 methyl 46.3 19 0.00065 27.8 3.8 52 122-173 10-61 (170)
34 3mb5_A SAM-dependent methyltra 43.9 65 0.0022 26.6 7.0 60 111-170 75-137 (255)
35 4dzr_A Protein-(glutamine-N5) 43.8 69 0.0024 25.0 6.8 56 118-173 18-76 (215)
36 3hnr_A Probable methyltransfer 43.4 76 0.0026 25.3 7.1 57 116-172 32-88 (220)
37 3io3_A DEHA2D07832P; chaperone 42.5 21 0.00073 33.1 4.1 34 129-162 16-59 (348)
38 3p9n_A Possible methyltransfer 42.4 1.2E+02 0.0041 23.9 8.1 52 120-171 32-87 (189)
39 1byi_A Dethiobiotin synthase; 41.9 12 0.0004 30.6 2.0 14 227-240 108-121 (224)
40 2i7c_A Spermidine synthase; tr 41.4 64 0.0022 28.3 6.9 49 125-173 74-124 (283)
41 3h2b_A SAM-dependent methyltra 40.8 69 0.0024 25.3 6.4 57 116-173 29-85 (203)
42 1dus_A MJ0882; hypothetical pr 40.2 78 0.0027 24.2 6.4 55 116-170 39-93 (194)
43 3e8s_A Putative SAM dependent 40.2 95 0.0032 24.5 7.1 54 117-170 40-93 (227)
44 1iy9_A Spermidine synthase; ro 40.0 1.1E+02 0.0037 26.8 8.1 46 127-172 73-120 (275)
45 1g3q_A MIND ATPase, cell divis 37.9 14 0.00049 30.3 1.9 15 226-240 110-124 (237)
46 2pwy_A TRNA (adenine-N(1)-)-me 37.8 73 0.0025 26.1 6.3 62 109-170 76-140 (258)
47 3kjh_A CO dehydrogenase/acetyl 37.8 15 0.00053 29.8 2.1 17 225-241 129-145 (254)
48 1y8c_A S-adenosylmethionine-de 36.1 1.3E+02 0.0043 24.2 7.3 59 112-170 18-78 (246)
49 3bxo_A N,N-dimethyltransferase 36.0 1E+02 0.0036 24.7 6.8 59 116-174 25-85 (239)
50 3gt7_A Sensor protein; structu 35.7 40 0.0014 25.5 4.1 43 149-192 5-47 (154)
51 1inl_A Spermidine synthase; be 34.9 1.4E+02 0.0046 26.5 8.0 47 126-172 87-135 (296)
52 2ph1_A Nucleotide-binding prot 34.5 18 0.0006 30.9 2.0 16 226-241 127-142 (262)
53 1rjd_A PPM1P, carboxy methyl t 34.3 35 0.0012 31.5 4.1 41 125-165 93-134 (334)
54 3n53_A Response regulator rece 34.3 52 0.0018 24.1 4.4 39 153-193 5-43 (140)
55 3bwc_A Spermidine synthase; SA 33.8 1.4E+02 0.0046 26.5 7.8 46 127-172 93-140 (304)
56 3m33_A Uncharacterized protein 33.8 1.5E+02 0.005 24.3 7.5 50 128-177 47-96 (226)
57 1n0w_A DNA repair protein RAD5 33.7 26 0.0009 28.5 2.9 81 226-307 118-223 (243)
58 2qy6_A UPF0209 protein YFCK; s 33.7 53 0.0018 29.1 5.1 180 95-302 35-243 (257)
59 1uir_A Polyamine aminopropyltr 33.5 74 0.0025 28.4 6.0 48 125-172 73-122 (314)
60 1p91_A Ribosomal RNA large sub 33.4 1.2E+02 0.0042 25.1 7.1 55 120-174 73-132 (269)
61 3r3h_A O-methyltransferase, SA 33.0 40 0.0014 28.8 4.1 75 95-169 24-103 (242)
62 2p35_A Trans-aconitate 2-methy 32.9 86 0.0029 25.6 5.9 48 127-174 31-80 (259)
63 3lte_A Response regulator; str 32.5 1.4E+02 0.0046 21.3 8.2 43 150-193 5-47 (132)
64 3jwh_A HEN1; methyltransferase 32.1 1.2E+02 0.004 24.4 6.6 60 112-171 12-73 (217)
65 3ccf_A Cyclopropane-fatty-acyl 32.1 1.1E+02 0.0039 25.7 6.7 52 123-174 51-102 (279)
66 3jwg_A HEN1, methyltransferase 32.1 1.3E+02 0.0045 24.1 6.8 61 112-172 12-74 (219)
67 3nhm_A Response regulator; pro 32.0 54 0.0018 23.6 4.1 40 152-193 5-44 (133)
68 1vjo_A Alanine--glyoxylate ami 31.4 1.3E+02 0.0045 26.0 7.1 73 88-162 40-119 (393)
69 4dzz_A Plasmid partitioning pr 31.1 21 0.00071 28.4 1.8 14 227-240 75-88 (206)
70 1vbf_A 231AA long hypothetical 30.8 1.1E+02 0.0036 24.9 6.1 58 116-173 57-114 (231)
71 1o54_A SAM-dependent O-methylt 30.5 1.3E+02 0.0044 25.5 6.8 60 111-170 94-156 (277)
72 3cz5_A Two-component response 30.1 90 0.0031 23.2 5.2 42 152-193 6-48 (153)
73 1i9g_A Hypothetical protein RV 30.0 1.4E+02 0.0048 25.0 6.9 59 112-170 82-143 (280)
74 2qr3_A Two-component system re 29.3 73 0.0025 23.0 4.4 41 152-193 4-44 (140)
75 2zr9_A Protein RECA, recombina 28.4 38 0.0013 31.2 3.3 63 228-290 140-225 (349)
76 1hyq_A MIND, cell division inh 28.3 25 0.00085 29.4 1.9 15 226-240 109-123 (263)
77 1wzn_A SAM-dependent methyltra 28.1 1.3E+02 0.0044 24.6 6.2 58 113-170 22-82 (252)
78 3hv2_A Response regulator/HD d 27.9 98 0.0034 23.1 5.1 42 151-193 14-55 (153)
79 2j48_A Two-component sensor ki 27.8 47 0.0016 22.7 3.0 41 152-193 2-42 (119)
80 1u94_A RECA protein, recombina 27.6 27 0.00093 32.5 2.2 54 227-280 141-207 (356)
81 3hdg_A Uncharacterized protein 27.6 44 0.0015 24.3 2.9 40 153-193 9-48 (137)
82 3njr_A Precorrin-6Y methylase; 27.6 1.3E+02 0.0045 24.6 6.2 59 112-170 37-96 (204)
83 3ea0_A ATPase, para family; al 27.3 19 0.00066 29.5 1.0 15 227-241 118-132 (245)
84 2qxy_A Response regulator; reg 27.2 68 0.0023 23.4 4.0 42 151-193 4-45 (142)
85 1xp8_A RECA protein, recombina 26.8 79 0.0027 29.5 5.2 54 228-281 153-219 (366)
86 2oze_A ORF delta'; para, walke 26.7 25 0.00084 30.2 1.6 54 110-163 15-77 (298)
87 3bkw_A MLL3908 protein, S-aden 26.6 1.2E+02 0.004 24.5 5.6 57 116-172 30-87 (243)
88 3i42_A Response regulator rece 26.3 70 0.0024 22.8 3.8 40 153-193 5-44 (127)
89 2woo_A ATPase GET3; tail-ancho 26.2 27 0.00093 31.5 1.9 34 129-162 17-58 (329)
90 1wcv_1 SOJ, segregation protei 26.2 30 0.001 29.3 2.0 15 226-240 110-124 (257)
91 3f6c_A Positive transcription 26.1 64 0.0022 23.2 3.6 40 153-193 3-43 (134)
92 4e7p_A Response regulator; DNA 25.9 88 0.003 23.3 4.4 41 153-193 22-63 (150)
93 2xj4_A MIPZ; replication, cell 25.8 26 0.0009 30.4 1.7 15 226-240 102-116 (286)
94 3q9l_A Septum site-determining 25.8 30 0.001 28.6 1.9 14 227-240 113-126 (260)
95 1jy4_A B4dimer; eight-stranded 25.7 24 0.00081 23.8 1.0 10 296-305 20-29 (35)
96 3fwz_A Inner membrane protein 25.7 1.3E+02 0.0043 23.2 5.4 38 132-169 9-48 (140)
97 3kyj_B CHEY6 protein, putative 25.1 1.4E+02 0.0049 21.9 5.5 45 149-193 11-56 (145)
98 3cwq_A Para family chromosome 25.1 24 0.00083 29.3 1.3 15 226-240 66-81 (209)
99 3ou2_A SAM-dependent methyltra 25.0 2.4E+02 0.0082 22.1 7.1 52 118-169 34-86 (218)
100 2xvm_A Tellurite resistance pr 24.6 1.5E+02 0.0052 22.9 5.8 50 121-170 24-73 (199)
101 3ug7_A Arsenical pump-driving 24.5 31 0.0011 31.4 2.0 34 129-162 23-65 (349)
102 3ez9_A Para; DNA binding, wing 24.4 27 0.00092 32.0 1.5 50 113-162 87-157 (403)
103 3k9g_A PF-32 protein; ssgcid, 24.4 28 0.00095 29.4 1.5 15 226-240 143-157 (267)
104 3t8y_A CHEB, chemotaxis respon 24.3 92 0.0031 23.9 4.4 41 153-193 27-68 (164)
105 2woj_A ATPase GET3; tail-ancho 24.0 24 0.00082 32.5 1.1 33 130-162 17-59 (354)
106 2kw5_A SLR1183 protein; struct 23.8 1.6E+02 0.0054 23.2 5.8 48 124-171 24-71 (202)
107 3eod_A Protein HNR; response r 23.7 63 0.0021 23.2 3.1 41 151-192 7-47 (130)
108 2yxe_A Protein-L-isoaspartate 23.7 1.4E+02 0.0049 23.8 5.6 54 117-170 65-121 (215)
109 3eul_A Possible nitrate/nitrit 23.6 75 0.0026 23.6 3.7 45 149-193 13-58 (152)
110 3cg4_A Response regulator rece 23.4 82 0.0028 22.9 3.8 42 151-193 7-48 (142)
111 4ep8_A Urease subunit gamma; a 23.3 19 0.00064 29.5 0.2 14 249-262 12-25 (100)
112 3kcn_A Adenylate cyclase homol 23.3 1.2E+02 0.0041 22.6 4.7 40 152-193 5-44 (151)
113 2jk1_A HUPR, hydrogenase trans 23.3 97 0.0033 22.6 4.2 39 153-193 3-41 (139)
114 3ez2_A Plasmid partition prote 22.9 29 0.00099 31.6 1.4 50 113-162 84-154 (398)
115 2b4a_A BH3024; flavodoxin-like 22.8 50 0.0017 24.1 2.5 19 150-168 14-32 (138)
116 3dtn_A Putative methyltransfer 22.6 1.6E+02 0.0055 23.7 5.7 59 115-173 29-90 (234)
117 3lbf_A Protein-L-isoaspartate 22.4 1.9E+02 0.0066 22.9 6.1 53 118-170 66-118 (210)
118 4fur_A Urease subunit gamma 2; 22.3 20 0.00068 29.5 0.2 14 249-262 16-29 (104)
119 2p7i_A Hypothetical protein; p 21.7 3E+02 0.01 21.8 7.9 56 117-172 29-85 (250)
120 3sho_A Transcriptional regulat 21.6 3E+02 0.01 21.7 8.4 85 112-198 23-113 (187)
121 3ajd_A Putative methyltransfer 21.4 48 0.0016 28.7 2.4 36 144-179 197-238 (274)
122 3lua_A Response regulator rece 21.3 40 0.0014 24.7 1.6 18 151-168 4-21 (140)
123 3grc_A Sensor protein, kinase; 20.9 81 0.0028 22.9 3.3 42 151-193 6-47 (140)
124 3llv_A Exopolyphosphatase-rela 20.6 1.3E+02 0.0044 22.7 4.5 39 132-170 8-48 (141)
125 3cnb_A DNA-binding response re 20.3 57 0.002 23.6 2.3 44 150-193 7-51 (143)
No 1
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=96.73 E-value=0.005 Score=54.27 Aligned_cols=165 Identities=17% Similarity=0.168 Sum_probs=92.0
Q ss_pred ccCcHHHHHHHHHHhhhcCCccEEEeccCchhHhHhhhccCCceeEeccChhHHHHHHhhCC--Cc-eeEEeeeccchhh
Q 021206 111 PQQTVKEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFP--TL-ESYHVEYDTKVNE 187 (316)
Q Consensus 111 pqqt~~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~P--~l-eay~V~Y~T~v~e 187 (316)
+.++.++.+.+...++ .|-+.|-+|-|. |-+|.|...+|+-+=+|-|++|++.+++..- ++ +...|.+.. .+
T Consensus 14 ~~v~~~~~~~L~~~l~--~a~~VLEiGtGy-STl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~--gd 88 (202)
T 3cvo_A 14 LTMPPAEAEALRMAYE--EAEVILEYGSGG-STVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVW--TD 88 (202)
T ss_dssp CCSCHHHHHHHHHHHH--HCSEEEEESCSH-HHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEE--CC
T ss_pred ccCCHHHHHHHHHHhh--CCCEEEEECchH-HHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEE--eC
Confidence 3688888888877443 577999999997 6666665558999999999999988775321 11 122233221 01
Q ss_pred HHHHHHHcCCCCCCCCCCCCCcccccccccCCCccc--c--cccccEEEEeCCCCCCCCCCCchhHHHHHHHHHhhcCCC
Q 021206 188 ADELMNAVGSDEECRVVTDPRFSKCRLALKGFPSEV--Y--DVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMARNRESG 263 (316)
Q Consensus 188 A~~LL~~~r~~~~C~pv~~l~~S~CkLAL~~LP~ev--Y--e~eWDvImVDgP~Gy~~eaPGRM~AIyTAavmARar~~g 263 (316)
|.+. ..-..|+....+ -.+..++..+ + +-..|+|+|||..+ ....+- .+-+-|.||
T Consensus 89 a~~~------~~wg~p~~~~~~----~~l~~~~~~i~~~~~~~~fDlIfIDg~k~--------~~~~~~--~l~~l~~GG 148 (202)
T 3cvo_A 89 IGPT------GDWGHPVSDAKW----RSYPDYPLAVWRTEGFRHPDVVLVDGRFR--------VGCALA--TAFSITRPV 148 (202)
T ss_dssp CSSB------CGGGCBSSSTTG----GGTTHHHHGGGGCTTCCCCSEEEECSSSH--------HHHHHH--HHHHCSSCE
T ss_pred chhh------hcccccccchhh----hhHHHHhhhhhccccCCCCCEEEEeCCCc--------hhHHHH--HHHhcCCCe
Confidence 1000 001222221111 1111112222 1 24699999999652 233333 335555555
Q ss_pred CceEEEecC-ChhHHHHHHHhhcccccccccccceeeeEecCCC
Q 021206 264 ETDVFVHDV-DRVVEDKFSKAFLCEGYLKEQEGRIRHFVVPSHR 306 (316)
Q Consensus 264 ~TdVfVHDV-dR~VE~~fs~EFLC~~nLv~~~GrLwHF~Ip~~~ 306 (316)
. |+++|| .|.-+.. ..+|| .+++..||+..|++.+..
T Consensus 149 ~--Iv~DNv~~r~~y~~-v~~~~---~~~~~~~~~a~f~~~p~~ 186 (202)
T 3cvo_A 149 T--LLFDDYSQRRWQHQ-VEEFL---GAPLMIGRLAAFQVEPQP 186 (202)
T ss_dssp E--EEETTGGGCSSGGG-GHHHH---CCCEEETTEEEEEECCCC
T ss_pred E--EEEeCCcCCcchHH-HHHHH---hHHhhcCceEEEEeCCCC
Confidence 3 467774 5532221 12333 457899999999996543
No 2
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=93.34 E-value=0.14 Score=49.40 Aligned_cols=152 Identities=12% Similarity=0.126 Sum_probs=92.8
Q ss_pred cCCccEEEeccCchhHhHhhhccCC-ceeEeccChhHHHHHHhhCCCcee--EE----eeeccchhhHHHHHHHcCCCCC
Q 021206 128 KSPCNFLVFGLGYDSLMWSALNHGG-RTLFLEEDKSWINQIKEKFPTLES--YH----VEYDTKVNEADELMNAVGSDEE 200 (316)
Q Consensus 128 raPCNfLVFGLg~dslmW~aLN~gG-rTvFLEEd~~~i~~v~~~~P~lea--y~----V~Y~T~v~eA~~LL~~~r~~~~ 200 (316)
..|=|.||.|+|--..+-..+.|.. +...+|=|+.-|+-.++-+|.+-. ++ =+.+.-+.||.+-|+.+...
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~-- 281 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE-- 281 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH--
T ss_pred CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc--
Confidence 3567999999999999988888654 677899999999988887776422 11 11233345777777643221
Q ss_pred CCCCCCCCcccccccccCCCcccccccccEEEEeCCCCCCCCCCCch-hHHHHHHHHHhhcC----CCC--c---eEEEe
Q 021206 201 CRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRM-TAIYTAGLMARNRE----SGE--T---DVFVH 270 (316)
Q Consensus 201 C~pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGRM-~AIyTAavmARar~----~g~--T---dVfVH 270 (316)
..+||||++|.+.+.....|... ...||.-.+...++ +|. + -++.|
T Consensus 282 ------------------------~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~ 337 (381)
T 3c6k_A 282 ------------------------GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLT 337 (381)
T ss_dssp ------------------------TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCH
T ss_pred ------------------------cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcch
Confidence 23699999998876555555444 46788766544332 341 1 23346
Q ss_pred cCChhHHHHHHHhhcccc---cc--cccccceeeeEecCC
Q 021206 271 DVDRVVEDKFSKAFLCEG---YL--KEQEGRIRHFVVPSH 305 (316)
Q Consensus 271 DVdR~VE~~fs~EFLC~~---nL--v~~~GrLwHF~Ip~~ 305 (316)
+..+.+++.+.+.|---. +. |-.-+..|=|.+.+.
T Consensus 338 ~~~~~i~~tl~~vF~~v~~~~~~~~VPSy~~~W~F~~aSK 377 (381)
T 3c6k_A 338 EALSLYEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTVWK 377 (381)
T ss_dssp HHHHHHHHHHTTSSSCEEEEEEEECCGGGSSCEEEEEEEE
T ss_pred hHHHHHHHHHHHhCCcceEeeEEEEecCCCCceeeeEEEC
Confidence 666777777777652111 11 223334788888764
No 3
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=92.14 E-value=0.27 Score=47.17 Aligned_cols=148 Identities=12% Similarity=0.155 Sum_probs=85.8
Q ss_pred cCCccEEEeccCchhHhHhhhccC-CceeEeccChhHHHHHHhhCCCcee--EE----eeeccchhhHHHHHHHcCCCCC
Q 021206 128 KSPCNFLVFGLGYDSLMWSALNHG-GRTLFLEEDKSWINQIKEKFPTLES--YH----VEYDTKVNEADELMNAVGSDEE 200 (316)
Q Consensus 128 raPCNfLVFGLg~dslmW~aLN~g-GrTvFLEEd~~~i~~v~~~~P~lea--y~----V~Y~T~v~eA~~LL~~~r~~~~ 200 (316)
..|-++||.|.|--.+.-..+.|+ .+-+.+|=|+.-++..++.+|.+.. ++ =+.+-...||.+.|+.+...
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~-- 264 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE-- 264 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH--
T ss_pred CCCCEEEEEECChhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhcc--
Confidence 358899999999999888888876 4678999999999999999886532 11 02334456777777633110
Q ss_pred CCCCCCCCcccccccccCCCcccccccccEEEEeCCCCCCCCCCCchhHHHHHHHHHh-------h-cCCCC--ceEEE-
Q 021206 201 CRVVTDPRFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYHEAAPGRMTAIYTAGLMAR-------N-RESGE--TDVFV- 269 (316)
Q Consensus 201 C~pv~~l~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~~eaPGRM~AIyTAavmAR-------a-r~~g~--TdVfV- 269 (316)
+-.+|||++|.|.+-...+|++ .||...+.+ . +.+|. +..=-
T Consensus 265 ------------------------~~~fDvII~D~~d~P~~~~p~~---L~t~eFy~~~~~~~~~~L~pgGilv~qs~s~ 317 (364)
T 2qfm_A 265 ------------------------GREFDYVINDLTAVPISTSPEE---DSTWEFLRLILDLSMKVLKQDGKYFTQGNCV 317 (364)
T ss_dssp ------------------------TCCEEEEEEECCSSCCCCC-------CHHHHHHHHHHHHHHTEEEEEEEEEEEEET
T ss_pred ------------------------CCCceEEEECCCCcccCcCchh---hhHHHHHHHHHHHHHhhCCCCcEEEEEcCCc
Confidence 2369999999976212224544 455443332 1 22341 22222
Q ss_pred --ecCChhHHHHHHHhhcccccc------cccccceeeeEecCC
Q 021206 270 --HDVDRVVEDKFSKAFLCEGYL------KEQEGRIRHFVVPSH 305 (316)
Q Consensus 270 --HDVdR~VE~~fs~EFLC~~nL------v~~~GrLwHF~Ip~~ 305 (316)
.++-+..|+.+..-| |.-.. |-.-+-+|=|.+-++
T Consensus 318 ~~~e~~~~~~~~l~~~F-~~v~~~~~~~~vPsy~~~w~f~~~~k 360 (364)
T 2qfm_A 318 NLTEALSLYEEQLGRLY-CPVEFSKEIVCVPSYLELWVFYTVWK 360 (364)
T ss_dssp TCHHHHHHHHHHHTTSS-SCEEEEEEEECCGGGSSCEEEEEEEE
T ss_pred chHHHHHHHHHHHHHhC-CceEEeeEeeecCCchhheEeEEeec
Confidence 233355666565555 32222 333334787777554
No 4
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=87.06 E-value=1.1 Score=41.71 Aligned_cols=81 Identities=19% Similarity=0.197 Sum_probs=55.3
Q ss_pred CccEEEeccCchhHhHhhhc--cCCceeEeccChhHHHHHHhhCCCceeEEeeeccchhhHHHHHHHcCCCCCCCCCCCC
Q 021206 130 PCNFLVFGLGYDSLMWSALN--HGGRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMNAVGSDEECRVVTDP 207 (316)
Q Consensus 130 PCNfLVFGLg~dslmW~aLN--~gGrTvFLEEd~~~i~~v~~~~P~leay~V~Y~T~v~eA~~LL~~~r~~~~C~pv~~l 207 (316)
|.++|+.|.|--++.-..+. ++.+.+-+|=|+..++..++.++....-.| +-...++.+.++.
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv--~v~~~Da~~~l~~------------- 154 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRV--KIRVDDARMVAES------------- 154 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTE--EEEESCHHHHHHT-------------
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCce--EEEECcHHHHHhh-------------
Confidence 56999999998877655554 577888999999999999988764211011 1223456666651
Q ss_pred CcccccccccCCCcccccccccEEEEeCCCCCC
Q 021206 208 RFSKCRLALKGFPSEVYDVEWDLIMVDAPTGYH 240 (316)
Q Consensus 208 ~~S~CkLAL~~LP~evYe~eWDvImVDgP~Gy~ 240 (316)
++ +-.+|+|++|++.+..
T Consensus 155 -----------~~----~~~fDvIi~D~~~~~~ 172 (317)
T 3gjy_A 155 -----------FT----PASRDVIIRDVFAGAI 172 (317)
T ss_dssp -----------CC----TTCEEEEEECCSTTSC
T ss_pred -----------cc----CCCCCEEEECCCCccc
Confidence 11 2468999999887653
No 5
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=85.88 E-value=2.7 Score=34.81 Aligned_cols=77 Identities=19% Similarity=0.185 Sum_probs=59.1
Q ss_pred ChhHHHHHHHHHhCCCC-ccCcHHHHHHHHHHhhhcCCccEEEeccCc--hhHhHhh-hccCCceeEeccChhHHHHHHh
Q 021206 94 PPSLANALVHYATTNIT-PQQTVKEISVSLRVLAQKSPCNFLVFGLGY--DSLMWSA-LNHGGRTLFLEEDKSWINQIKE 169 (316)
Q Consensus 94 P~~v~~AlvHYAtsn~t-pqqt~~Ei~~~~~VL~~raPCNfLVFGLg~--dslmW~a-LN~gGrTvFLEEd~~~i~~v~~ 169 (316)
|.++.+++-+|+..+.- .+......+.+..+++...|-++|=+|-|. -++.++. ++++|+-+-+|-++..++.+++
T Consensus 22 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~ 101 (221)
T 3u81_A 22 PQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQ 101 (221)
T ss_dssp HHHHHHHHHHHHHHHTCGGGCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCcCcccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHH
Confidence 66899999999975544 466777777777777778899999998755 4444444 3568899999999999887776
Q ss_pred h
Q 021206 170 K 170 (316)
Q Consensus 170 ~ 170 (316)
+
T Consensus 102 ~ 102 (221)
T 3u81_A 102 M 102 (221)
T ss_dssp H
T ss_pred H
Confidence 4
No 6
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=85.60 E-value=1.9 Score=40.05 Aligned_cols=50 Identities=18% Similarity=0.303 Sum_probs=40.5
Q ss_pred HHhhhcCCccEEEeccCchhHhHhhhccC--CceeEeccChhHHHHHHhhCC
Q 021206 123 RVLAQKSPCNFLVFGLGYDSLMWSALNHG--GRTLFLEEDKSWINQIKEKFP 172 (316)
Q Consensus 123 ~VL~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~P 172 (316)
-++....|=|.||.|+|-...+-..+.|. -+.+.+|=|+.-|+-.++-+|
T Consensus 77 ~l~~~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp 128 (294)
T 3o4f_A 77 PLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLP 128 (294)
T ss_dssp HHHHSSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred HHhhCCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCc
Confidence 34455788999999999999998888874 377889999998887776555
No 7
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=82.56 E-value=4.6 Score=36.83 Aligned_cols=49 Identities=24% Similarity=0.369 Sum_probs=39.0
Q ss_pred hhhcCCccEEEeccCchhHhHhhhcc--CCceeEeccChhHHHHHHhhCCC
Q 021206 125 LAQKSPCNFLVFGLGYDSLMWSALNH--GGRTLFLEEDKSWINQIKEKFPT 173 (316)
Q Consensus 125 L~~raPCNfLVFGLg~dslmW~aLN~--gGrTvFLEEd~~~i~~v~~~~P~ 173 (316)
+....|-++|+.|.|.-...-..+.+ +++-+.+|=|+..++..++..+.
T Consensus 104 ~~~~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~ 154 (314)
T 2b2c_A 104 FAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPG 154 (314)
T ss_dssp HHSSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTT
T ss_pred hhCCCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 34467889999999987766555554 57899999999999999988765
No 8
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=82.47 E-value=6.5 Score=32.53 Aligned_cols=77 Identities=12% Similarity=0.167 Sum_probs=57.5
Q ss_pred ChhHHHHHHHHHhCCCCccCcHHHHHHHHHHhhhcCCccEEEeccCc--hhHhHhhhccCCceeEeccChhHHHHHHhh
Q 021206 94 PPSLANALVHYATTNITPQQTVKEISVSLRVLAQKSPCNFLVFGLGY--DSLMWSALNHGGRTLFLEEDKSWINQIKEK 170 (316)
Q Consensus 94 P~~v~~AlvHYAtsn~tpqqt~~Ei~~~~~VL~~raPCNfLVFGLg~--dslmW~aLN~gGrTvFLEEd~~~i~~v~~~ 170 (316)
+.++++.+-+|+..+..+.........+...+....+-++|.+|-|. -+..++...++++-+-+|-++..++.++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~ 97 (233)
T 2gpy_A 19 RDQYIEQMEREAHEQQVPIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKH 97 (233)
T ss_dssp CCHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence 45788889999876666666666777777777777888999997754 444555555578888899899888777654
No 9
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=81.88 E-value=6.8 Score=32.96 Aligned_cols=77 Identities=10% Similarity=0.003 Sum_probs=57.1
Q ss_pred ChhHHHHHHHHHhCCCCc--cCcHHHHHHHHHHhhhcCCccEEEeccCch--hHhHhhhc-cCCceeEeccChhHHHHHH
Q 021206 94 PPSLANALVHYATTNITP--QQTVKEISVSLRVLAQKSPCNFLVFGLGYD--SLMWSALN-HGGRTLFLEEDKSWINQIK 168 (316)
Q Consensus 94 P~~v~~AlvHYAtsn~tp--qqt~~Ei~~~~~VL~~raPCNfLVFGLg~d--slmW~aLN-~gGrTvFLEEd~~~i~~v~ 168 (316)
+..++.++-+++..+..| +....+.+.+..+++...|-++|-+|-|.- ++.++... .+|+-+.+|-++.+++.++
T Consensus 35 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~ 114 (232)
T 3cbg_A 35 DSFYLAQLRRETAHLPGAPMQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAK 114 (232)
T ss_dssp CCHHHHHHHHHTTTSTTGGGSCCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCccCcCHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 456788888998777667 557777777777777678889999987654 34444333 3789999999999988777
Q ss_pred hh
Q 021206 169 EK 170 (316)
Q Consensus 169 ~~ 170 (316)
+.
T Consensus 115 ~~ 116 (232)
T 3cbg_A 115 KY 116 (232)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 10
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=80.73 E-value=8.8 Score=31.21 Aligned_cols=77 Identities=14% Similarity=0.175 Sum_probs=56.4
Q ss_pred ChhHHHHHHHHHhCCCCccCcHHHHHHHHHHhhhcCCccEEEeccCch--hHhHhhhcc-CCceeEeccChhHHHHHHhh
Q 021206 94 PPSLANALVHYATTNITPQQTVKEISVSLRVLAQKSPCNFLVFGLGYD--SLMWSALNH-GGRTLFLEEDKSWINQIKEK 170 (316)
Q Consensus 94 P~~v~~AlvHYAtsn~tpqqt~~Ei~~~~~VL~~raPCNfLVFGLg~d--slmW~aLN~-gGrTvFLEEd~~~i~~v~~~ 170 (316)
+.++...+-+|+..+..|.........+..+++...|-++|-.|-|.- +..++...+ +|+-+-+|-++..++..+++
T Consensus 21 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~ 100 (210)
T 3c3p_A 21 ADPVVAAMEQIARERNIPIVDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRM 100 (210)
T ss_dssp CCHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH
Confidence 356788889998776667777766666666666678899999987654 444444434 78888899999988877654
No 11
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=80.16 E-value=8.5 Score=32.15 Aligned_cols=77 Identities=17% Similarity=0.156 Sum_probs=56.1
Q ss_pred ChhHHHHHHHHHhCCCCc--cCcHHHHHHHHHHhhhcCCccEEEeccC--chhHhHhhhcc-CCceeEeccChhHHHHHH
Q 021206 94 PPSLANALVHYATTNITP--QQTVKEISVSLRVLAQKSPCNFLVFGLG--YDSLMWSALNH-GGRTLFLEEDKSWINQIK 168 (316)
Q Consensus 94 P~~v~~AlvHYAtsn~tp--qqt~~Ei~~~~~VL~~raPCNfLVFGLg--~dslmW~aLN~-gGrTvFLEEd~~~i~~v~ 168 (316)
...+++.+-+|+..+..| +........+...+....+-++|..|-| ..+..++...+ +|+-+-+|-++..++.++
T Consensus 23 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~ 102 (239)
T 2hnk_A 23 EPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVAR 102 (239)
T ss_dssp CCHHHHHHHHHHHTC---CCSCCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCcccccCHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 346778888898877777 5567777777777777889999999775 44555555444 789999999999988877
Q ss_pred hh
Q 021206 169 EK 170 (316)
Q Consensus 169 ~~ 170 (316)
+.
T Consensus 103 ~~ 104 (239)
T 2hnk_A 103 KY 104 (239)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 12
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=78.59 E-value=11 Score=32.01 Aligned_cols=77 Identities=9% Similarity=-0.038 Sum_probs=58.4
Q ss_pred ChhHHHHHHHHHhCCCCccCcHHHHHHHHHHhhhcCCc---cEEEeccCch--hHhHhh-hccCCceeEeccChhHHHHH
Q 021206 94 PPSLANALVHYATTNITPQQTVKEISVSLRVLAQKSPC---NFLVFGLGYD--SLMWSA-LNHGGRTLFLEEDKSWINQI 167 (316)
Q Consensus 94 P~~v~~AlvHYAtsn~tpqqt~~Ei~~~~~VL~~raPC---NfLVFGLg~d--slmW~a-LN~gGrTvFLEEd~~~i~~v 167 (316)
+.++++.+..||..+..|......-..+..+++...|- ++|=.|-|.. ++.++. +.++|+-+-+|-|+.+++.+
T Consensus 18 ~~~~l~~~~~~a~~~~~p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a 97 (221)
T 3dr5_A 18 TDAAVARAREDAAEFGLPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQA 97 (221)
T ss_dssp CCHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHH
Confidence 46788899999987777788777777777666666666 8999988765 333333 45689999999999999877
Q ss_pred Hhh
Q 021206 168 KEK 170 (316)
Q Consensus 168 ~~~ 170 (316)
+++
T Consensus 98 ~~~ 100 (221)
T 3dr5_A 98 KAL 100 (221)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 13
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=77.42 E-value=6.5 Score=35.39 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=37.8
Q ss_pred HhhhcCCccEEEeccCchhHhHhhhcc--CCceeEeccChhHHHHHHhhCC
Q 021206 124 VLAQKSPCNFLVFGLGYDSLMWSALNH--GGRTLFLEEDKSWINQIKEKFP 172 (316)
Q Consensus 124 VL~~raPCNfLVFGLg~dslmW~aLN~--gGrTvFLEEd~~~i~~v~~~~P 172 (316)
.+....|-++|+.|.|-..+.-..+.+ .++-+.+|=|+.-++..++..+
T Consensus 78 l~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~ 128 (294)
T 3adn_A 78 LLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLP 128 (294)
T ss_dssp HHHSTTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCH
T ss_pred HhcCCCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhh
Confidence 344567899999999988877666666 3467789999999988887654
No 14
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=75.08 E-value=7.6 Score=32.58 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHhCCCCccCcHHHHHHHHHHhhhcCCccEEEeccCch--hHhHhhhccCCceeEeccChhHHHHHHhh
Q 021206 95 PSLANALVHYATTNITPQQTVKEISVSLRVLAQKSPCNFLVFGLGYD--SLMWSALNHGGRTLFLEEDKSWINQIKEK 170 (316)
Q Consensus 95 ~~v~~AlvHYAtsn~tpqqt~~Ei~~~~~VL~~raPCNfLVFGLg~d--slmW~aLN~gGrTvFLEEd~~~i~~v~~~ 170 (316)
..+.+++..|+..+..|.+.......+...++...+-++|=.|-|.- ++.++...++++-+-+|=++..++.++++
T Consensus 37 ~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~ 114 (232)
T 3ntv_A 37 NSSIEVLREFAEVNEVPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQN 114 (232)
T ss_dssp CCGGGGHHHHHHHTTCCCCCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 34567788888766667777666677777777778999999977554 44444444688888899999888776654
No 15
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=74.73 E-value=15 Score=29.89 Aligned_cols=77 Identities=12% Similarity=-0.038 Sum_probs=55.8
Q ss_pred ChhHHHHHHHHHhC--CCCccCcHHHHHHHHHHhhhcCCccEEEeccCch--hHhHhhhcc-CCceeEeccChhHHHHHH
Q 021206 94 PPSLANALVHYATT--NITPQQTVKEISVSLRVLAQKSPCNFLVFGLGYD--SLMWSALNH-GGRTLFLEEDKSWINQIK 168 (316)
Q Consensus 94 P~~v~~AlvHYAts--n~tpqqt~~Ei~~~~~VL~~raPCNfLVFGLg~d--slmW~aLN~-gGrTvFLEEd~~~i~~v~ 168 (316)
...+++++-.++.. +..++.+......+..+++...+.++|-+|-|.- ++.++...+ +++-+-+|-++..++..+
T Consensus 32 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~ 111 (229)
T 2avd_A 32 EHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGR 111 (229)
T ss_dssp CCHHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 34677888888865 3345777777777777777788999999987654 444444333 778889999999988777
Q ss_pred hh
Q 021206 169 EK 170 (316)
Q Consensus 169 ~~ 170 (316)
+.
T Consensus 112 ~~ 113 (229)
T 2avd_A 112 PL 113 (229)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 16
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=74.28 E-value=16 Score=29.71 Aligned_cols=76 Identities=13% Similarity=0.135 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHhCCCCccC--cHHHHHHHHHHhhhcCCccEEEeccCch--hHhHhhhcc-CCceeEeccChhHHHHHHh
Q 021206 95 PSLANALVHYATTNITPQQ--TVKEISVSLRVLAQKSPCNFLVFGLGYD--SLMWSALNH-GGRTLFLEEDKSWINQIKE 169 (316)
Q Consensus 95 ~~v~~AlvHYAtsn~tpqq--t~~Ei~~~~~VL~~raPCNfLVFGLg~d--slmW~aLN~-gGrTvFLEEd~~~i~~v~~ 169 (316)
..+++.+.+++..+..|.+ +......+..++....|-++|-.|-|.- +..++...+ +|+-+-+|-++..++.+++
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~ 101 (223)
T 3duw_A 22 DSTLEEVLQVNAAANLPAHDVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARS 101 (223)
T ss_dssp CHHHHHHHHHHHHTTCCSCSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHH
T ss_pred CHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence 4567888888876666654 3555555665656678999999987654 444444444 7888889999998887765
Q ss_pred h
Q 021206 170 K 170 (316)
Q Consensus 170 ~ 170 (316)
+
T Consensus 102 ~ 102 (223)
T 3duw_A 102 N 102 (223)
T ss_dssp H
T ss_pred H
Confidence 4
No 17
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=74.26 E-value=17 Score=30.83 Aligned_cols=78 Identities=9% Similarity=-0.046 Sum_probs=55.5
Q ss_pred ChhHHHHHHHHHhCCCCc--cCcHHHHHHHHHHhhhcCCccEEEeccCch--hHhHhhhcc-CCceeEeccChhHHHHHH
Q 021206 94 PPSLANALVHYATTNITP--QQTVKEISVSLRVLAQKSPCNFLVFGLGYD--SLMWSALNH-GGRTLFLEEDKSWINQIK 168 (316)
Q Consensus 94 P~~v~~AlvHYAtsn~tp--qqt~~Ei~~~~~VL~~raPCNfLVFGLg~d--slmW~aLN~-gGrTvFLEEd~~~i~~v~ 168 (316)
+.+++.++..|+..+..+ +.+......+..+++...|-++|-.|-|.. ++.++...+ +|+-+-+|-++.+++..+
T Consensus 33 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~ 112 (237)
T 3c3y_A 33 EAGFLKELREANESHPDSYMSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGL 112 (237)
T ss_dssp SCHHHHHHHHHHTTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 456788888998665543 445666666666667678899999987554 344443333 899999999999998877
Q ss_pred hhC
Q 021206 169 EKF 171 (316)
Q Consensus 169 ~~~ 171 (316)
+..
T Consensus 113 ~~~ 115 (237)
T 3c3y_A 113 PFI 115 (237)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 18
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=73.62 E-value=15 Score=32.23 Aligned_cols=46 Identities=26% Similarity=0.347 Sum_probs=36.9
Q ss_pred hhcCCccEEEeccCchhHhHhhhccC-CceeEeccChhHHHHHHhhC
Q 021206 126 AQKSPCNFLVFGLGYDSLMWSALNHG-GRTLFLEEDKSWINQIKEKF 171 (316)
Q Consensus 126 ~~raPCNfLVFGLg~dslmW~aLN~g-GrTvFLEEd~~~i~~v~~~~ 171 (316)
....|.++|+.|.|.-.+.-..+.++ ++-+.+|=|+..++.+++..
T Consensus 72 ~~~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~ 118 (281)
T 1mjf_A 72 AHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI 118 (281)
T ss_dssp HSSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT
T ss_pred hCCCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 34578999999999887776666664 58889999999999888765
No 19
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=73.48 E-value=6 Score=35.64 Aligned_cols=46 Identities=22% Similarity=0.324 Sum_probs=36.7
Q ss_pred hcCCccEEEeccCchhHhHhhhcc--CCceeEeccChhHHHHHHhhCC
Q 021206 127 QKSPCNFLVFGLGYDSLMWSALNH--GGRTLFLEEDKSWINQIKEKFP 172 (316)
Q Consensus 127 ~raPCNfLVFGLg~dslmW~aLN~--gGrTvFLEEd~~~i~~v~~~~P 172 (316)
...|-++|+.|.|.-.+.-..+.+ .++-+.+|-|+..++..++..+
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~ 140 (304)
T 2o07_A 93 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLP 140 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred CCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhH
Confidence 457889999999887766665555 3688999999999998887754
No 20
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=73.42 E-value=14 Score=33.54 Aligned_cols=49 Identities=24% Similarity=0.196 Sum_probs=39.7
Q ss_pred hhhcCCccEEEeccCchhHhHhhhcc--CCceeEeccChhHHHHHHhhCCC
Q 021206 125 LAQKSPCNFLVFGLGYDSLMWSALNH--GGRTLFLEEDKSWINQIKEKFPT 173 (316)
Q Consensus 125 L~~raPCNfLVFGLg~dslmW~aLN~--gGrTvFLEEd~~~i~~v~~~~P~ 173 (316)
+....|-++|+.|.|...+.-..+.+ +++-+.+|=|+.-++..++..+.
T Consensus 112 ~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~ 162 (321)
T 2pt6_A 112 TVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN 162 (321)
T ss_dssp HHSSSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTT
T ss_pred hcCCCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHh
Confidence 33457899999999988877776665 56888999999999998887765
No 21
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=73.34 E-value=14 Score=31.77 Aligned_cols=78 Identities=12% Similarity=-0.020 Sum_probs=55.0
Q ss_pred ChhHHHHHHHHHhCCCCc--cCcHHHHHHHHHHhhhcCCccEEEeccCch--hHhHhhhcc-CCceeEeccChhHHHHHH
Q 021206 94 PPSLANALVHYATTNITP--QQTVKEISVSLRVLAQKSPCNFLVFGLGYD--SLMWSALNH-GGRTLFLEEDKSWINQIK 168 (316)
Q Consensus 94 P~~v~~AlvHYAtsn~tp--qqt~~Ei~~~~~VL~~raPCNfLVFGLg~d--slmW~aLN~-gGrTvFLEEd~~~i~~v~ 168 (316)
+..+++++.+||..+.-+ +.+...-..+..+++...|-++|-.|-|.- ++.++...+ +|+-+-+|-++.+++..+
T Consensus 42 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~ 121 (247)
T 1sui_A 42 EHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGL 121 (247)
T ss_dssp CTTHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 456788889998765543 445555666666666678899999988664 333333333 789999999999998877
Q ss_pred hhC
Q 021206 169 EKF 171 (316)
Q Consensus 169 ~~~ 171 (316)
+..
T Consensus 122 ~~~ 124 (247)
T 1sui_A 122 PVI 124 (247)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 22
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=67.47 E-value=25 Score=29.85 Aligned_cols=76 Identities=12% Similarity=0.090 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHhCCCCccCc--HHHHHHHHHHhhhcCCccEEEeccCch--hHhHhhhcc-CCceeEeccChhHHHHHHh
Q 021206 95 PSLANALVHYATTNITPQQT--VKEISVSLRVLAQKSPCNFLVFGLGYD--SLMWSALNH-GGRTLFLEEDKSWINQIKE 169 (316)
Q Consensus 95 ~~v~~AlvHYAtsn~tpqqt--~~Ei~~~~~VL~~raPCNfLVFGLg~d--slmW~aLN~-gGrTvFLEEd~~~i~~v~~ 169 (316)
..+++.+..++.....|.+. ......+..++....+-++|-.|-|.. ++.++...+ +|+-+-+|-++..++.+++
T Consensus 27 ~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~ 106 (248)
T 3tfw_A 27 DPVLDRVLENNHRAGLPAHDVAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARE 106 (248)
T ss_dssp CHHHHHHHHHHHHTTCBSCCCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence 45677888888766667643 555555555556678999999987654 444444434 7888899999999887775
Q ss_pred h
Q 021206 170 K 170 (316)
Q Consensus 170 ~ 170 (316)
+
T Consensus 107 ~ 107 (248)
T 3tfw_A 107 N 107 (248)
T ss_dssp H
T ss_pred H
Confidence 5
No 23
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=62.20 E-value=40 Score=27.28 Aligned_cols=77 Identities=14% Similarity=0.058 Sum_probs=53.4
Q ss_pred ChhHHHHHHHHHh-CCCC--ccCcHHHHHHHHHHhhhcCCccEEEeccCch--hHhHhhhcc-CCceeEeccChhHHHHH
Q 021206 94 PPSLANALVHYAT-TNIT--PQQTVKEISVSLRVLAQKSPCNFLVFGLGYD--SLMWSALNH-GGRTLFLEEDKSWINQI 167 (316)
Q Consensus 94 P~~v~~AlvHYAt-sn~t--pqqt~~Ei~~~~~VL~~raPCNfLVFGLg~d--slmW~aLN~-gGrTvFLEEd~~~i~~v 167 (316)
...+++.+-+|+. ...- .+.+......+..++....+.++|-.|-|.- ++.++...+ +++-+-+|-++..++.+
T Consensus 26 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a 105 (225)
T 3tr6_A 26 EPPLLAELREETTRSFSTYAMQTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALA 105 (225)
T ss_dssp CCHHHHHHHHHHHHHCTTGGGSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHH
T ss_pred CCHHHHHHHHHHHhhCCCCccccCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHH
Confidence 3456777888775 4433 3455666666766767678899999977554 444444333 78888999999998877
Q ss_pred Hhh
Q 021206 168 KEK 170 (316)
Q Consensus 168 ~~~ 170 (316)
+++
T Consensus 106 ~~~ 108 (225)
T 3tr6_A 106 KEY 108 (225)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 24
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=61.29 E-value=28 Score=26.71 Aligned_cols=67 Identities=10% Similarity=0.107 Sum_probs=46.1
Q ss_pred HHhCCCCccCcHHHHHH-HHHHhhhcCCccEEEeccCchhHhHhhhccCCceeEeccChhHHHHHHhh
Q 021206 104 YATTNITPQQTVKEISV-SLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEK 170 (316)
Q Consensus 104 YAtsn~tpqqt~~Ei~~-~~~VL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~ 170 (316)
|...+..|+.+..++.. +.+.+..+..-++|.+|-|...+.......+++-+-+|-++..++.++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~ 74 (192)
T 1l3i_A 7 FIKNPSVPGPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMN 74 (192)
T ss_dssp SCCCTTSCCCCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHH
T ss_pred hhcCCCCCCCChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHH
Confidence 33444455455555443 44455556778999999988777766666678888889999888877654
No 25
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=57.91 E-value=17 Score=30.39 Aligned_cols=65 Identities=9% Similarity=0.083 Sum_probs=46.3
Q ss_pred HHhCCCCccCcHHHHHHHHHHhhhcCCccEEEeccCchhHhHhhhccCCceeEeccChhHHHHHHhh
Q 021206 104 YATTNITPQQTVKEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEK 170 (316)
Q Consensus 104 YAtsn~tpqqt~~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~ 170 (316)
|.+|. .+.+..++..+.+.+..+.+-++|-+|-|...+.......+++-+-+|-++..++.++++
T Consensus 14 ~~~s~--~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~ 78 (260)
T 1vl5_A 14 YVTSQ--IHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAF 78 (260)
T ss_dssp -----------CCCHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHH
T ss_pred eecCc--cccCHHHHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHH
Confidence 44433 355666777888888878889999999988887777777788888899999998877654
No 26
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=55.20 E-value=25 Score=28.29 Aligned_cols=60 Identities=25% Similarity=0.328 Sum_probs=42.8
Q ss_pred ccCcHHHH-HHHHHHhhhcCCccEEEeccCchh--HhHhhhccCCceeEeccChhHHHHHHhh
Q 021206 111 PQQTVKEI-SVSLRVLAQKSPCNFLVFGLGYDS--LMWSALNHGGRTLFLEEDKSWINQIKEK 170 (316)
Q Consensus 111 pqqt~~Ei-~~~~~VL~~raPCNfLVFGLg~ds--lmW~aLN~gGrTvFLEEd~~~i~~v~~~ 170 (316)
.+++..|+ ..+...+.-+...++|-+|-|... ..++...++++-+-+|-++..++.++++
T Consensus 21 g~~~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~ 83 (204)
T 3e05_A 21 KLITKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDN 83 (204)
T ss_dssp TTSCCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHH
T ss_pred CcCChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH
Confidence 45588888 455566665677899999876554 4455555557888889999988877654
No 27
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=50.89 E-value=58 Score=24.81 Aligned_cols=59 Identities=12% Similarity=0.007 Sum_probs=42.0
Q ss_pred cCcHHHHHHHHHHhhhcCCccEEEeccCchhHhHhhhccCCceeEeccChhHHHHHHhh
Q 021206 112 QQTVKEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEK 170 (316)
Q Consensus 112 qqt~~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~ 170 (316)
..+..-...+.+.+....+-++|=+|-|.-.+......++++-+-+|-++..++..+++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~ 76 (183)
T 2yxd_A 18 ITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQN 76 (183)
T ss_dssp CCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHH
Confidence 33344445556666556677999998888776665555777888899899988877755
No 28
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=49.11 E-value=46 Score=25.52 Aligned_cols=60 Identities=17% Similarity=0.131 Sum_probs=40.6
Q ss_pred ccCcHHHHHHH-HHHhhhcCCccEEEeccCchhHhHh--hhccCCceeEeccChhHHHHHHhh
Q 021206 111 PQQTVKEISVS-LRVLAQKSPCNFLVFGLGYDSLMWS--ALNHGGRTLFLEEDKSWINQIKEK 170 (316)
Q Consensus 111 pqqt~~Ei~~~-~~VL~~raPCNfLVFGLg~dslmW~--aLN~gGrTvFLEEd~~~i~~v~~~ 170 (316)
.++|..|+... .+.+.-+..-++|.+|-|.-.+... ...++++-+-+|=++..++.++++
T Consensus 6 g~~t~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~ 68 (178)
T 3hm2_A 6 GQLTKQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSN 68 (178)
T ss_dssp CCSHHHHHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH
Confidence 47888887643 3334445667999998877655544 333467778888888888776654
No 29
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=48.63 E-value=45 Score=27.22 Aligned_cols=59 Identities=15% Similarity=0.110 Sum_probs=41.1
Q ss_pred cCcHHHHHHHHHHhhhcCCccEEEeccCchhHhHhhhccCCceeEeccChhHHHHHHhh
Q 021206 112 QQTVKEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEK 170 (316)
Q Consensus 112 qqt~~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~ 170 (316)
.....++..+.+.+.-+..-++|.+|-|.-.+.-.....+++-+.+|-++..++..+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~ 132 (248)
T 2yvl_A 74 IIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKN 132 (248)
T ss_dssp CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHH
T ss_pred cccchhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHH
Confidence 34466677666666656778999998876554444444477888888898888776654
No 30
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=48.09 E-value=70 Score=26.60 Aligned_cols=60 Identities=12% Similarity=0.088 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhhhc--CCccEEEeccCchhHhHhhhccCCceeEeccChhHHHHHHhhCCCc
Q 021206 115 VKEISVSLRVLAQK--SPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPTL 174 (316)
Q Consensus 115 ~~Ei~~~~~VL~~r--aPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~P~l 174 (316)
..+...+.+.|.+. .+.++|=+|-|...+.......|.+.+-+|=++..++.++++.+++
T Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~ 95 (263)
T 3pfg_A 34 HREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDA 95 (263)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCC
Confidence 45556666777664 4589999999888888777777888889999999999988876643
No 31
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=47.72 E-value=33 Score=30.24 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=39.3
Q ss_pred hhhcCCccEEEeccCchhHhHhhhccCCceeEeccChhHHHHHHhhCCC
Q 021206 125 LAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPT 173 (316)
Q Consensus 125 L~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~P~ 173 (316)
+....|-+.|+.|.|-..+.-..+.++++-+.+|=|+..++..++..+.
T Consensus 68 ~~~~~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~ 116 (262)
T 2cmg_A 68 CTKKELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPH 116 (262)
T ss_dssp TTSSCCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTT
T ss_pred hcCCCCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHh
Confidence 3345688999999998888776676667888899999999888876654
No 32
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=47.38 E-value=71 Score=24.47 Aligned_cols=46 Identities=22% Similarity=0.206 Sum_probs=37.1
Q ss_pred cCCccEEEeccCchhHhHhhhccCCceeEeccChhHHHHHHhhCCC
Q 021206 128 KSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPT 173 (316)
Q Consensus 128 raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~P~ 173 (316)
+.+.++|-+|-|...........|.+.+-+|-++..++.++++.++
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~ 90 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPE 90 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTT
T ss_pred cCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCCC
Confidence 4677999999887777666666678888999999999988887754
No 33
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=46.26 E-value=19 Score=27.81 Aligned_cols=52 Identities=15% Similarity=0.202 Sum_probs=38.5
Q ss_pred HHHhhhcCCccEEEeccCchhHhHhhhccCCceeEeccChhHHHHHHhhCCC
Q 021206 122 LRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPT 173 (316)
Q Consensus 122 ~~VL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~P~ 173 (316)
.+.+.-...-++|-+|-|...........+++.+-+|-++..++.++++.++
T Consensus 10 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~ 61 (170)
T 3i9f_A 10 LPNIFEGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDS 61 (170)
T ss_dssp HHHHHSSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHHCTT
T ss_pred HHhcCcCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHhCCC
Confidence 3444445667999999888777766666667888888899988888877443
No 34
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=43.90 E-value=65 Score=26.64 Aligned_cols=60 Identities=13% Similarity=0.081 Sum_probs=45.1
Q ss_pred ccCcHHHHHHHHHHhhhcCCccEEEeccCchhHhHhhh---ccCCceeEeccChhHHHHHHhh
Q 021206 111 PQQTVKEISVSLRVLAQKSPCNFLVFGLGYDSLMWSAL---NHGGRTLFLEEDKSWINQIKEK 170 (316)
Q Consensus 111 pqqt~~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~aL---N~gGrTvFLEEd~~~i~~v~~~ 170 (316)
..+..+++..+...+.-+.+.++|.+|-|.-.+.-... +++++-+-+|-++..++.++++
T Consensus 75 ~~~~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~ 137 (255)
T 3mb5_A 75 QIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWEN 137 (255)
T ss_dssp CCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHH
T ss_pred ccccHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHH
Confidence 34677888888888887888999999887766544433 4478888888888887776654
No 35
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=43.75 E-value=69 Score=25.05 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=29.0
Q ss_pred HHHHHHHhhh-cCCccEEEeccCchhHhHh--hhccCCceeEeccChhHHHHHHhhCCC
Q 021206 118 ISVSLRVLAQ-KSPCNFLVFGLGYDSLMWS--ALNHGGRTLFLEEDKSWINQIKEKFPT 173 (316)
Q Consensus 118 i~~~~~VL~~-raPCNfLVFGLg~dslmW~--aLN~gGrTvFLEEd~~~i~~v~~~~P~ 173 (316)
+..+.+.+.. ..+-++|=.|-|....... ...++++.+-+|=++..++.++++...
T Consensus 18 ~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~ 76 (215)
T 4dzr_A 18 VEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAER 76 (215)
T ss_dssp HHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------
T ss_pred HHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 3444555554 6788999998776655444 444467888999999988888776554
No 36
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=43.36 E-value=76 Score=25.34 Aligned_cols=57 Identities=28% Similarity=0.267 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhhcCCccEEEeccCchhHhHhhhccCCceeEeccChhHHHHHHhhCC
Q 021206 116 KEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFP 172 (316)
Q Consensus 116 ~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~P 172 (316)
..+..+.+.+..+.+.++|-+|-|...+.-.....|++.+-+|-++..++..+++.+
T Consensus 32 ~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~ 88 (220)
T 3hnr_A 32 AHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP 88 (220)
T ss_dssp TTHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhccCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC
Confidence 344555566666788899999988877776666668888899999999888887765
No 37
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=42.47 E-value=21 Score=33.06 Aligned_cols=34 Identities=12% Similarity=0.297 Sum_probs=22.2
Q ss_pred CCccEEEe----ccCchh----HhHhhh--ccCCceeEeccChh
Q 021206 129 SPCNFLVF----GLGYDS----LMWSAL--NHGGRTLFLEEDKS 162 (316)
Q Consensus 129 aPCNfLVF----GLg~ds----lmW~aL--N~gGrTvFLEEd~~ 162 (316)
.+-.++|| |-|.-+ +.|..- ..|-|++.++-|+.
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPA 59 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 44578887 445443 334434 67889999998865
No 38
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=42.37 E-value=1.2e+02 Score=23.94 Aligned_cols=52 Identities=21% Similarity=0.269 Sum_probs=35.0
Q ss_pred HHHHHhhh---cCCccEEEeccCchhHhHhhhccC-CceeEeccChhHHHHHHhhC
Q 021206 120 VSLRVLAQ---KSPCNFLVFGLGYDSLMWSALNHG-GRTLFLEEDKSWINQIKEKF 171 (316)
Q Consensus 120 ~~~~VL~~---raPCNfLVFGLg~dslmW~aLN~g-GrTvFLEEd~~~i~~v~~~~ 171 (316)
.+.+.|.. ....++|=+|-|.-.+....+..| ++.+-+|=|+..++.++++.
T Consensus 32 ~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~ 87 (189)
T 3p9n_A 32 SLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNI 87 (189)
T ss_dssp HHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHH
Confidence 34444544 456789988887766555444444 46788999999988877653
No 39
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=41.93 E-value=12 Score=30.58 Aligned_cols=14 Identities=21% Similarity=0.582 Sum_probs=12.3
Q ss_pred cccEEEEeCCCCCC
Q 021206 227 EWDLIMVDAPTGYH 240 (316)
Q Consensus 227 eWDvImVDgP~Gy~ 240 (316)
+.|+|+||+|.|..
T Consensus 108 ~yD~viID~p~~l~ 121 (224)
T 1byi_A 108 QADWVLVEGAGGWF 121 (224)
T ss_dssp TCSEEEEECSSSTT
T ss_pred hCCEEEEEcCCccc
Confidence 67999999998876
No 40
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=41.42 E-value=64 Score=28.31 Aligned_cols=49 Identities=24% Similarity=0.196 Sum_probs=39.8
Q ss_pred hhhcCCccEEEeccCchhHhHhhhcc--CCceeEeccChhHHHHHHhhCCC
Q 021206 125 LAQKSPCNFLVFGLGYDSLMWSALNH--GGRTLFLEEDKSWINQIKEKFPT 173 (316)
Q Consensus 125 L~~raPCNfLVFGLg~dslmW~aLN~--gGrTvFLEEd~~~i~~v~~~~P~ 173 (316)
+....|-++|+.|.|...+.-..+.+ +++-+.+|=|+.-++..++..+.
T Consensus 74 ~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~ 124 (283)
T 2i7c_A 74 TVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN 124 (283)
T ss_dssp TTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTT
T ss_pred hcCCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHH
Confidence 34467889999999988877776665 46889999999999988887764
No 41
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=40.83 E-value=69 Score=25.34 Aligned_cols=57 Identities=12% Similarity=0.036 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhhcCCccEEEeccCchhHhHhhhccCCceeEeccChhHHHHHHhhCCC
Q 021206 116 KEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPT 173 (316)
Q Consensus 116 ~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~P~ 173 (316)
.+...+...+... +-++|-+|-|...........|.+.+-+|-++..++..+++.++
T Consensus 29 ~~~~~l~~~~~~~-~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~ 85 (203)
T 3h2b_A 29 PDRVLIEPWATGV-DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPS 85 (203)
T ss_dssp TTHHHHHHHHHHC-CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhccC-CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCCC
Confidence 3455556666554 88999999888777666666678888999999999988887554
No 42
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=40.22 E-value=78 Score=24.24 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhhcCCccEEEeccCchhHhHhhhccCCceeEeccChhHHHHHHhh
Q 021206 116 KEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEK 170 (316)
Q Consensus 116 ~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~ 170 (316)
.....+.+.+..+..-++|-+|-|...+.-.....+++.+-+|-++..++..+++
T Consensus 39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~ 93 (194)
T 1dus_A 39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKEN 93 (194)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH
T ss_pred hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHH
Confidence 4556666666666777999998887766555555577888888888888776654
No 43
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=40.16 E-value=95 Score=24.48 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=44.1
Q ss_pred HHHHHHHHhhhcCCccEEEeccCchhHhHhhhccCCceeEeccChhHHHHHHhh
Q 021206 117 EISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEK 170 (316)
Q Consensus 117 Ei~~~~~VL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~ 170 (316)
....+.+.+..+.+.++|=+|-|.-.........|.+.+-+|=++..++..+++
T Consensus 40 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~ 93 (227)
T 3e8s_A 40 TDQAILLAILGRQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA 93 (227)
T ss_dssp HHHHHHHHHHHTCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT
T ss_pred ccHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh
Confidence 445566667777889999999988887777777788888899999999988887
No 44
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=39.97 E-value=1.1e+02 Score=26.80 Aligned_cols=46 Identities=24% Similarity=0.382 Sum_probs=38.0
Q ss_pred hcCCccEEEeccCchhHhHhhhcc-C-CceeEeccChhHHHHHHhhCC
Q 021206 127 QKSPCNFLVFGLGYDSLMWSALNH-G-GRTLFLEEDKSWINQIKEKFP 172 (316)
Q Consensus 127 ~raPCNfLVFGLg~dslmW~aLN~-g-GrTvFLEEd~~~i~~v~~~~P 172 (316)
...|-++|+.|.|-..+.-..+.+ | ++-+.+|=|+.-++.+++..+
T Consensus 73 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~ 120 (275)
T 1iy9_A 73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLP 120 (275)
T ss_dssp SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCH
T ss_pred CCCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhH
Confidence 457899999999988887777766 3 588999999999998887664
No 45
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=37.93 E-value=14 Score=30.25 Aligned_cols=15 Identities=33% Similarity=0.882 Sum_probs=12.7
Q ss_pred ccccEEEEeCCCCCC
Q 021206 226 VEWDLIMVDAPTGYH 240 (316)
Q Consensus 226 ~eWDvImVDgP~Gy~ 240 (316)
-++|+|+||+|.|..
T Consensus 110 ~~yD~viiD~~~~~~ 124 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ 124 (237)
T ss_dssp GGCSEEEEECCSSSS
T ss_pred hcCCEEEEECCCCcC
Confidence 468999999998865
No 46
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=37.83 E-value=73 Score=26.15 Aligned_cols=62 Identities=16% Similarity=0.105 Sum_probs=44.0
Q ss_pred CCccCcHHHHHHHHHHhhhcCCccEEEeccCchhHhHhhh---ccCCceeEeccChhHHHHHHhh
Q 021206 109 ITPQQTVKEISVSLRVLAQKSPCNFLVFGLGYDSLMWSAL---NHGGRTLFLEEDKSWINQIKEK 170 (316)
Q Consensus 109 ~tpqqt~~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~aL---N~gGrTvFLEEd~~~i~~v~~~ 170 (316)
....+..+++..+...+.-+...++|.+|-|.-.+.-... .++++-+-+|-++..++.++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~ 140 (258)
T 2pwy_A 76 SATPTYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERN 140 (258)
T ss_dssp SSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence 3345667777777777776778899999887655443333 4477888888888888777654
No 47
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=37.75 E-value=15 Score=29.78 Aligned_cols=17 Identities=12% Similarity=0.165 Sum_probs=14.2
Q ss_pred cccccEEEEeCCCCCCC
Q 021206 225 DVEWDLIMVDAPTGYHE 241 (316)
Q Consensus 225 e~eWDvImVDgP~Gy~~ 241 (316)
.-+.|+|+||+|.|...
T Consensus 129 ~~~yD~viiD~pp~~~~ 145 (254)
T 3kjh_A 129 LDKKEAVVMDMGAGIEH 145 (254)
T ss_dssp HTCCSEEEEEECTTCTT
T ss_pred cCCCCEEEEeCCCcccH
Confidence 44789999999998865
No 48
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=36.10 E-value=1.3e+02 Score=24.17 Aligned_cols=59 Identities=10% Similarity=0.029 Sum_probs=44.7
Q ss_pred cCcHHHHHHHHHHhhhc--CCccEEEeccCchhHhHhhhccCCceeEeccChhHHHHHHhh
Q 021206 112 QQTVKEISVSLRVLAQK--SPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEK 170 (316)
Q Consensus 112 qqt~~Ei~~~~~VL~~r--aPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~ 170 (316)
......+..+.+.|.+. .+-++|-+|-|...+.......|.+.+-+|-++..++..+++
T Consensus 18 ~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~ 78 (246)
T 1y8c_A 18 VDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENK 78 (246)
T ss_dssp CCHHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHH
Confidence 34455667777888775 678999999888776666666677888899999888877765
No 49
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=35.98 E-value=1e+02 Score=24.70 Aligned_cols=59 Identities=15% Similarity=0.154 Sum_probs=42.8
Q ss_pred HHHHHHHHHhhh--cCCccEEEeccCchhHhHhhhccCCceeEeccChhHHHHHHhhCCCc
Q 021206 116 KEISVSLRVLAQ--KSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPTL 174 (316)
Q Consensus 116 ~Ei~~~~~VL~~--raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~P~l 174 (316)
.+...+.+.|.+ ..+-++|=+|-|...........+.+-+-+|-++..++..+++.+++
T Consensus 25 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~ 85 (239)
T 3bxo_A 25 AEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPDA 85 (239)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhCCCC
Confidence 455556666665 45678999988877666655566667888999999999888876543
No 50
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=35.69 E-value=40 Score=25.49 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=22.8
Q ss_pred ccCCceeEeccChhHHHHHHhhCCCceeEEeeeccchhhHHHHH
Q 021206 149 NHGGRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELM 192 (316)
Q Consensus 149 N~gGrTvFLEEd~~~i~~v~~~~P~leay~V~Y~T~v~eA~~LL 192 (316)
+.+.+-+.+|+|+.....++...-.. .|.|..-....+|-+++
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~~L~~~-g~~v~~~~~~~~al~~l 47 (154)
T 3gt7_A 5 NRAGEILIVEDSPTQAEHLKHILEET-GYQTEHVRNGREAVRFL 47 (154)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHTT-TCEEEEESSHHHHHHHH
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHC-CCEEEEeCCHHHHHHHH
Confidence 34567788899988765554332111 25554444445555444
No 51
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=34.91 E-value=1.4e+02 Score=26.46 Aligned_cols=47 Identities=19% Similarity=0.298 Sum_probs=38.0
Q ss_pred hhcCCccEEEeccCchhHhHhhhcc--CCceeEeccChhHHHHHHhhCC
Q 021206 126 AQKSPCNFLVFGLGYDSLMWSALNH--GGRTLFLEEDKSWINQIKEKFP 172 (316)
Q Consensus 126 ~~raPCNfLVFGLg~dslmW~aLN~--gGrTvFLEEd~~~i~~v~~~~P 172 (316)
....|-++|+.|.|...+.-..+.+ +++-+.+|-|+..++.+++..+
T Consensus 87 ~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~ 135 (296)
T 1inl_A 87 LHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLK 135 (296)
T ss_dssp HSSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCH
T ss_pred cCCCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhH
Confidence 3456889999999988887777766 4688899999999988887654
No 52
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=34.47 E-value=18 Score=30.91 Aligned_cols=16 Identities=31% Similarity=0.590 Sum_probs=13.2
Q ss_pred ccccEEEEeCCCCCCC
Q 021206 226 VEWDLIMVDAPTGYHE 241 (316)
Q Consensus 226 ~eWDvImVDgP~Gy~~ 241 (316)
-++|+|+||+|.|...
T Consensus 127 ~~yD~ViID~pp~~~~ 142 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGD 142 (262)
T ss_dssp CSCSEEEEECCSSSSS
T ss_pred cCCCEEEEECcCCCch
Confidence 4689999999998743
No 53
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=34.29 E-value=35 Score=31.53 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=32.7
Q ss_pred hhhcCCccEEEeccCchhHhHhhhccCCceeEeccC-hhHHH
Q 021206 125 LAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEED-KSWIN 165 (316)
Q Consensus 125 L~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd-~~~i~ 165 (316)
|++...|.+++.|=|.|+..|.-.|.++++.|.|=| |+-++
T Consensus 93 l~~~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~ 134 (334)
T 1rjd_A 93 LVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVE 134 (334)
T ss_dssp HHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHH
T ss_pred HHHCCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHH
Confidence 444567999999999999999999987778888855 55443
No 54
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=34.25 E-value=52 Score=24.08 Aligned_cols=39 Identities=18% Similarity=0.195 Sum_probs=25.5
Q ss_pred ceeEeccChhHHHHHHhhCCCceeEEeeeccchhhHHHHHH
Q 021206 153 RTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMN 193 (316)
Q Consensus 153 rTvFLEEd~~~i~~v~~~~P~leay~V~Y~T~v~eA~~LL~ 193 (316)
+-+.+|+|+.....++...-.. |.|..-....+|-++++
T Consensus 5 ~iLivdd~~~~~~~l~~~l~~~--~~v~~~~~~~~a~~~~~ 43 (140)
T 3n53_A 5 KILIIDQQDFSRIELKNFLDSE--YLVIESKNEKEALEQID 43 (140)
T ss_dssp EEEEECSCHHHHHHHHHHHTTT--SEEEEESSHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHhc--ceEEEeCCHHHHHHHHh
Confidence 4567788887766665544333 77766666677777766
No 55
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=33.83 E-value=1.4e+02 Score=26.50 Aligned_cols=46 Identities=24% Similarity=0.402 Sum_probs=37.3
Q ss_pred hcCCccEEEeccCchhHhHhhhcc--CCceeEeccChhHHHHHHhhCC
Q 021206 127 QKSPCNFLVFGLGYDSLMWSALNH--GGRTLFLEEDKSWINQIKEKFP 172 (316)
Q Consensus 127 ~raPCNfLVFGLg~dslmW~aLN~--gGrTvFLEEd~~~i~~v~~~~P 172 (316)
...|-++|+.|.|.-.+.-..+.+ +++-+.+|=|+..++..++..+
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~ 140 (304)
T 3bwc_A 93 HPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFP 140 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred CCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhH
Confidence 467889999999988877766665 4688899999999988887664
No 56
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=33.76 E-value=1.5e+02 Score=24.30 Aligned_cols=50 Identities=12% Similarity=0.069 Sum_probs=41.4
Q ss_pred cCCccEEEeccCchhHhHhhhccCCceeEeccChhHHHHHHhhCCCceeE
Q 021206 128 KSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPTLESY 177 (316)
Q Consensus 128 raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~P~leay 177 (316)
+.+-++|-+|-|.-...+.....|++.+-+|-++..++.++++.++++..
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 96 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAPHADVY 96 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHCTTSEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhCCCceEE
Confidence 46789999999988888888888889999999999999999886654433
No 57
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=33.71 E-value=26 Score=28.47 Aligned_cols=81 Identities=20% Similarity=0.218 Sum_probs=38.4
Q ss_pred ccccEEEEeCCCCCCCC-CCC--c-------hhHHHHHHHHHhhcCCCCceEEEecCChhHHH--HH-----------HH
Q 021206 226 VEWDLIMVDAPTGYHEA-APG--R-------MTAIYTAGLMARNRESGETDVFVHDVDRVVED--KF-----------SK 282 (316)
Q Consensus 226 ~eWDvImVDgP~Gy~~e-aPG--R-------M~AIyTAavmARar~~g~TdVfVHDVdR~VE~--~f-----------s~ 282 (316)
.+=++|+||.|...... -.| . +..+. ..+...+++.|.|=|+++.+.+.+|. .| ++
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~ 196 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFL-RMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNII 196 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHH-HHHHHHHHHHCCEEEEEC-------------------------
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHH-HHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChh
Confidence 34579999999966543 222 2 22222 22222223347788888888888876 34 48
Q ss_pred hhccccccccc--ccceeeeEecCCCC
Q 021206 283 AFLCEGYLKEQ--EGRIRHFVVPSHRT 307 (316)
Q Consensus 283 EFLC~~nLv~~--~GrLwHF~Ip~~~~ 307 (316)
+++|+.-++=. .|..+...|..++.
T Consensus 197 ~~~~d~vi~l~~~~~~~r~l~v~K~r~ 223 (243)
T 1n0w_A 197 AHASTTRLYLRKGRGETRICKIYDSPC 223 (243)
T ss_dssp CCTTCEEEEEEECSTTEEEEEECCBTT
T ss_pred hhcCcEEEEEEEcCCCeEEEEEEECCC
Confidence 88998755433 34456677765543
No 58
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=33.70 E-value=53 Score=29.14 Aligned_cols=180 Identities=17% Similarity=0.206 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHhCCCCccCcHHHHHHHHHH-hhhcCCccEEEeccC--chhHh-Hhhh------ccCC---ce--eEecc
Q 021206 95 PSLANALVHYATTNITPQQTVKEISVSLRV-LAQKSPCNFLVFGLG--YDSLM-WSAL------NHGG---RT--LFLEE 159 (316)
Q Consensus 95 ~~v~~AlvHYAtsn~tpqqt~~Ei~~~~~V-L~~raPCNfLVFGLg--~dslm-W~aL------N~gG---rT--vFLEE 159 (316)
..+.+++--|+.-|..|+ +. +..+.+.++|-.|+| ...+. |.+. |+.| +. +=+|-
T Consensus 35 ~~l~E~~~vF~~~~~lp~----------r~~~~~~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~ 104 (257)
T 2qy6_A 35 NGLEETRYVFLGGNQLEA----------RFPEHPHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEK 104 (257)
T ss_dssp THHHHHHHHHHHHTTHHH----------HGGGCSSSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEES
T ss_pred CHHHHHHHHHHhccchHH----------HHHhcCCCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEEC
Confidence 457777777776554432 11 224567788886654 44444 6655 7754 22 33576
Q ss_pred Ch---hHHHHHHhhCCCceeEEeeeccchhhHHHHHHHcCC-CCCCCCC--C------CCCcccccccccCCCccccccc
Q 021206 160 DK---SWINQIKEKFPTLESYHVEYDTKVNEADELMNAVGS-DEECRVV--T------DPRFSKCRLALKGFPSEVYDVE 227 (316)
Q Consensus 160 d~---~~i~~v~~~~P~leay~V~Y~T~v~eA~~LL~~~r~-~~~C~pv--~------~l~~S~CkLAL~~LP~evYe~e 227 (316)
+| +-+.++.+..|++. ..|.+|++.+-. -+.|... . .+...+..=.|..++..- .-.
T Consensus 105 ~p~~~~~l~~a~~~~p~l~----------~~a~~l~~~w~~~~~g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~-~~~ 173 (257)
T 2qy6_A 105 FPLTRADLALAHQHWPELA----------PWAEQLQAQWPMPLPGCHRLLLDEGRVTLDLWFGDINELISQLDDSL-NQK 173 (257)
T ss_dssp SCCCHHHHHHHHTTCGGGH----------HHHHHHHHTCCCSCSEEEEEEEC--CEEEEEEESCHHHHGGGSCGGG-TTC
T ss_pred CcCCHHHHHHHHhcChhHH----------HHHHHHHHhccccccchhheeccCCceEEEEEECcHHHHHhhccccc-CCe
Confidence 66 56666666666653 457788774311 1112110 0 012222222233333211 126
Q ss_pred ccEEEEeCCCCCCCCCCCch-hHHHHHHHHHhhcCCCCceEEEecCChhHHHHHHHh-hcccccccccccceeeeEe
Q 021206 228 WDLIMVDAPTGYHEAAPGRM-TAIYTAGLMARNRESGETDVFVHDVDRVVEDKFSKA-FLCEGYLKEQEGRIRHFVV 302 (316)
Q Consensus 228 WDvImVDgP~Gy~~eaPGRM-~AIyTAavmARar~~g~TdVfVHDVdR~VE~~fs~E-FLC~~nLv~~~GrLwHF~I 302 (316)
.|+|.+|| +.|..=-+| ..-+-..+....|.|| + +..--.+..|.+....+ |- -..+.+.||=||..+
T Consensus 174 ~D~iflD~---fsp~~~p~lw~~~~l~~l~~~L~pGG-~-l~tysaa~~vrr~L~~aGF~--v~~~~g~~~kr~m~~ 243 (257)
T 2qy6_A 174 VDAWFLDG---FAPAKNPDMWTQNLFNAMARLARPGG-T-LATFTSAGFVRRGLQEAGFT--MQKRKGFGRKREMLC 243 (257)
T ss_dssp EEEEEECS---SCTTTCGGGCCHHHHHHHHHHEEEEE-E-EEESCCBHHHHHHHHHHTEE--EEEECCSTTCCCEEE
T ss_pred EEEEEECC---CCcccChhhcCHHHHHHHHHHcCCCc-E-EEEEeCCHHHHHHHHHCCCE--EEeCCCCCCCCceEE
Confidence 89999997 223322255 2222223333334344 2 11122345666655554 32 112334555555554
No 59
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=33.46 E-value=74 Score=28.42 Aligned_cols=48 Identities=21% Similarity=0.409 Sum_probs=38.1
Q ss_pred hhhcCCccEEEeccCchhHhHhhhcc--CCceeEeccChhHHHHHHhhCC
Q 021206 125 LAQKSPCNFLVFGLGYDSLMWSALNH--GGRTLFLEEDKSWINQIKEKFP 172 (316)
Q Consensus 125 L~~raPCNfLVFGLg~dslmW~aLN~--gGrTvFLEEd~~~i~~v~~~~P 172 (316)
+....|-++|+.|.|.-.+.-..+.+ +++-+.+|=|+..++..++..+
T Consensus 73 ~~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~ 122 (314)
T 1uir_A 73 LTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMP 122 (314)
T ss_dssp HHSSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred hcCCCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhH
Confidence 34567899999999988777666665 5688899999999988887654
No 60
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=33.39 E-value=1.2e+02 Score=25.15 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=37.7
Q ss_pred HHHHHhhh---cCCccEEEeccCchhHhHhhhc--cCCceeEeccChhHHHHHHhhCCCc
Q 021206 120 VSLRVLAQ---KSPCNFLVFGLGYDSLMWSALN--HGGRTLFLEEDKSWINQIKEKFPTL 174 (316)
Q Consensus 120 ~~~~VL~~---raPCNfLVFGLg~dslmW~aLN--~gGrTvFLEEd~~~i~~v~~~~P~l 174 (316)
.+.+.+.+ ..+-++|.+|-|...+.-.... +|++-+-+|-++..++..+++.+++
T Consensus 73 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 132 (269)
T 1p91_A 73 AIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQV 132 (269)
T ss_dssp HHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTS
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCc
Confidence 34444444 4567999998877554433333 4778888999999999888876543
No 61
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=33.04 E-value=40 Score=28.76 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHhCCCCc--cCcHHHHHHHHHHhhhcCCccEEEeccC--chhHhHhhhc-cCCceeEeccChhHHHHHHh
Q 021206 95 PSLANALVHYATTNITP--QQTVKEISVSLRVLAQKSPCNFLVFGLG--YDSLMWSALN-HGGRTLFLEEDKSWINQIKE 169 (316)
Q Consensus 95 ~~v~~AlvHYAtsn~tp--qqt~~Ei~~~~~VL~~raPCNfLVFGLg--~dslmW~aLN-~gGrTvFLEEd~~~i~~v~~ 169 (316)
..+++.+..|+.....+ +.+......+..+++...|-++|=.|-| ..++.++... .+|+-+-+|-++.+++.+++
T Consensus 24 ~~~l~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~ 103 (242)
T 3r3h_A 24 HPALAALRKETSTMELANMQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHP 103 (242)
T ss_dssp CHHHHHHHHTTSSSGGGGTSCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHH
T ss_pred CHHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence 45677888877544322 4556666677777777789999999764 4555555443 47888889988887655443
No 62
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=32.89 E-value=86 Score=25.64 Aligned_cols=48 Identities=10% Similarity=0.066 Sum_probs=36.5
Q ss_pred hcCCccEEEeccCchhHhHhhhc--cCCceeEeccChhHHHHHHhhCCCc
Q 021206 127 QKSPCNFLVFGLGYDSLMWSALN--HGGRTLFLEEDKSWINQIKEKFPTL 174 (316)
Q Consensus 127 ~raPCNfLVFGLg~dslmW~aLN--~gGrTvFLEEd~~~i~~v~~~~P~l 174 (316)
...+-++|-+|-|...+...... ++++.+-+|-++..++..+++.+++
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 80 (259)
T 2p35_A 31 LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNT 80 (259)
T ss_dssp CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTS
T ss_pred CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCc
Confidence 35678999998877665554444 4889999999999999888775554
No 63
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=32.49 E-value=1.4e+02 Score=21.34 Aligned_cols=43 Identities=16% Similarity=0.296 Sum_probs=23.3
Q ss_pred cCCceeEeccChhHHHHHHhhCCCceeEEeeeccchhhHHHHHH
Q 021206 150 HGGRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMN 193 (316)
Q Consensus 150 ~gGrTvFLEEd~~~i~~v~~~~P~leay~V~Y~T~v~eA~~LL~ 193 (316)
.+-+-+.+|+|+.....++...-. ..|.|..-....+|-++++
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~a~~~l~ 47 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKR-DHWQVEIAHNGFDAGIKLS 47 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHH-TTCEEEEESSHHHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHH-CCcEEEEeCCHHHHHHHHH
Confidence 345677788888775544432111 2355655555566666655
No 64
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=32.12 E-value=1.2e+02 Score=24.40 Aligned_cols=60 Identities=12% Similarity=0.149 Sum_probs=45.8
Q ss_pred cCcHHHHHHHHHHhhhcCCccEEEeccCchhHhHhhhccC--CceeEeccChhHHHHHHhhC
Q 021206 112 QQTVKEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHG--GRTLFLEEDKSWINQIKEKF 171 (316)
Q Consensus 112 qqt~~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~ 171 (316)
+.....+..+.+.+....+-++|=+|-|.-.+.......+ .+.+-+|-++..++..+++.
T Consensus 12 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~ 73 (217)
T 3jwh_A 12 SLNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERL 73 (217)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHH
Confidence 5666777888888888888999999888776665555444 47778888888888877663
No 65
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=32.09 E-value=1.1e+02 Score=25.67 Aligned_cols=52 Identities=19% Similarity=0.312 Sum_probs=41.2
Q ss_pred HHhhhcCCccEEEeccCchhHhHhhhccCCceeEeccChhHHHHHHhhCCCc
Q 021206 123 RVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPTL 174 (316)
Q Consensus 123 ~VL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~P~l 174 (316)
+.+..+.+.++|-+|-|...+......+|++.+-+|-++..++..+++.+++
T Consensus 51 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~ 102 (279)
T 3ccf_A 51 QLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHL 102 (279)
T ss_dssp HHHCCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTS
T ss_pred HHhCCCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhCCCC
Confidence 4455567789999999888777766668899999999999999888775443
No 66
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=32.06 E-value=1.3e+02 Score=24.06 Aligned_cols=61 Identities=13% Similarity=0.182 Sum_probs=46.0
Q ss_pred cCcHHHHHHHHHHhhhcCCccEEEeccCchhHhHhhhccC--CceeEeccChhHHHHHHhhCC
Q 021206 112 QQTVKEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHG--GRTLFLEEDKSWINQIKEKFP 172 (316)
Q Consensus 112 qqt~~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~aLN~g--GrTvFLEEd~~~i~~v~~~~P 172 (316)
+....-+..+.+.+....+-++|=+|-|.-.+.......+ .+.+-+|-++..++..+++..
T Consensus 12 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~ 74 (219)
T 3jwg_A 12 NLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLK 74 (219)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHH
Confidence 4555667777888888889999999887776665555544 588888999998888877643
No 67
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=32.03 E-value=54 Score=23.56 Aligned_cols=40 Identities=5% Similarity=0.041 Sum_probs=24.3
Q ss_pred CceeEeccChhHHHHHHhhCCCceeEEeeeccchhhHHHHHH
Q 021206 152 GRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMN 193 (316)
Q Consensus 152 GrTvFLEEd~~~i~~v~~~~P~leay~V~Y~T~v~eA~~LL~ 193 (316)
-+-+.+|+|+.....++...- ..|.|..-....+|-++++
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~--~~~~v~~~~~~~~a~~~l~ 44 (133)
T 3nhm_A 5 PKVLIVENSWTMRETLRLLLS--GEFDCTTAADGASGLQQAL 44 (133)
T ss_dssp CEEEEECSCHHHHHHHHHHHT--TTSEEEEESSHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHh--CCcEEEEECCHHHHHHHHh
Confidence 456778888877665554332 3456665555666666665
No 68
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=31.36 E-value=1.3e+02 Score=25.98 Aligned_cols=73 Identities=14% Similarity=0.141 Sum_probs=38.5
Q ss_pred ccccCCChhHHHHHHHHHhCCCCccCcHHHHHHHHHHhhhc---CCc-cEEEeccCchh---HhHhhhccCCceeEeccC
Q 021206 88 ETCTKTPPSLANALVHYATTNITPQQTVKEISVSLRVLAQK---SPC-NFLVFGLGYDS---LMWSALNHGGRTLFLEED 160 (316)
Q Consensus 88 ~~c~~lP~~v~~AlvHYAtsn~tpqqt~~Ei~~~~~VL~~r---aPC-NfLVFGLg~ds---lmW~aLN~gGrTvFLEEd 160 (316)
+....+|+.+.+|+..+....-.+ ........+.+-|++. .|- ++++..=|.+. ++...++ .|..|.+.+.
T Consensus 40 ~~~~~~~~~v~~a~~~~~~~~~~~-~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~~-~gd~Vl~~~~ 117 (393)
T 1vjo_A 40 PGPSNAHPSVLQAMNVSPVGHLDP-AFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVE-PGDVVLIGVA 117 (393)
T ss_dssp SSCCCCCHHHHHHHSSCCCCTTSH-HHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCC-TTCEEEEEES
T ss_pred CCCCCCCHHHHHHHhcccccccCH-HHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhccC-CCCEEEEEcC
Confidence 345578999999998776532211 1234445555666653 333 44444323333 2333344 4567777654
Q ss_pred hh
Q 021206 161 KS 162 (316)
Q Consensus 161 ~~ 162 (316)
.+
T Consensus 118 ~~ 119 (393)
T 1vjo_A 118 GY 119 (393)
T ss_dssp SH
T ss_pred Ch
Confidence 33
No 69
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=31.09 E-value=21 Score=28.39 Aligned_cols=14 Identities=21% Similarity=0.553 Sum_probs=11.8
Q ss_pred cccEEEEeCCCCCC
Q 021206 227 EWDLIMVDAPTGYH 240 (316)
Q Consensus 227 eWDvImVDgP~Gy~ 240 (316)
+.|+|+||+|.|..
T Consensus 75 ~yD~viiD~~~~~~ 88 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS 88 (206)
T ss_dssp TSSEEEEECCSSSS
T ss_pred CCCEEEEECCCCCC
Confidence 47999999998873
No 70
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=30.81 E-value=1.1e+02 Score=24.85 Aligned_cols=58 Identities=12% Similarity=-0.004 Sum_probs=41.7
Q ss_pred HHHHHHHHHhhhcCCccEEEeccCchhHhHhhhccCCceeEeccChhHHHHHHhhCCC
Q 021206 116 KEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFPT 173 (316)
Q Consensus 116 ~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~P~ 173 (316)
.-+..+.+.+..+..-++|-+|-|...+.......+++-+-+|-++..++.++++...
T Consensus 57 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~ 114 (231)
T 1vbf_A 57 NLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSY 114 (231)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhh
Confidence 3344555555556778999998887666655555678888899999998888776543
No 71
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=30.46 E-value=1.3e+02 Score=25.54 Aligned_cols=60 Identities=13% Similarity=0.135 Sum_probs=43.9
Q ss_pred ccCcHHHHHHHHHHhhhcCCccEEEeccCchhHhHhhh---ccCCceeEeccChhHHHHHHhh
Q 021206 111 PQQTVKEISVSLRVLAQKSPCNFLVFGLGYDSLMWSAL---NHGGRTLFLEEDKSWINQIKEK 170 (316)
Q Consensus 111 pqqt~~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~aL---N~gGrTvFLEEd~~~i~~v~~~ 170 (316)
..+..+++..+...+.-+...++|.+|-|.-.+.-..+ .++++-+.+|-++..++.++++
T Consensus 94 ~~~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~ 156 (277)
T 1o54_A 94 QIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESN 156 (277)
T ss_dssp CCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHH
Confidence 34667788887777776778899999887765443333 4578888888889888777654
No 72
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=30.06 E-value=90 Score=23.20 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=24.6
Q ss_pred CceeEeccChhHHHHHHhhCCCceeEEee-eccchhhHHHHHH
Q 021206 152 GRTLFLEEDKSWINQIKEKFPTLESYHVE-YDTKVNEADELMN 193 (316)
Q Consensus 152 GrTvFLEEd~~~i~~v~~~~P~leay~V~-Y~T~v~eA~~LL~ 193 (316)
-+-+.+|+|+.....++...-....|.|. .-+...+|.++++
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~ 48 (153)
T 3cz5_A 6 ARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYR 48 (153)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHH
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHh
Confidence 35677888887766666544332345554 3445566666665
No 73
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=30.02 E-value=1.4e+02 Score=24.97 Aligned_cols=59 Identities=14% Similarity=0.111 Sum_probs=42.7
Q ss_pred cCcHHHHHHHHHHhhhcCCccEEEeccCchhHhHhh---hccCCceeEeccChhHHHHHHhh
Q 021206 112 QQTVKEISVSLRVLAQKSPCNFLVFGLGYDSLMWSA---LNHGGRTLFLEEDKSWINQIKEK 170 (316)
Q Consensus 112 qqt~~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~a---LN~gGrTvFLEEd~~~i~~v~~~ 170 (316)
.+..+++..+...+.-+...++|..|-|.-.+.-.. ++++++-+-+|-++..++.++++
T Consensus 82 ~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~ 143 (280)
T 1i9g_A 82 VIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRN 143 (280)
T ss_dssp CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHH
T ss_pred eecHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence 445667777777777677889999988766544333 34578888889889888777654
No 74
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=29.32 E-value=73 Score=22.97 Aligned_cols=41 Identities=7% Similarity=0.127 Sum_probs=23.9
Q ss_pred CceeEeccChhHHHHHHhhCCCceeEEeeeccchhhHHHHHH
Q 021206 152 GRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMN 193 (316)
Q Consensus 152 GrTvFLEEd~~~i~~v~~~~P~leay~V~Y~T~v~eA~~LL~ 193 (316)
-+-+.+|+|+.....++...-.. .|.|..-....+|-++++
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~-g~~v~~~~~~~~a~~~l~ 44 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNH-FSKVITLSSPVSLSTVLR 44 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTT-SSEEEEECCHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHhC-CcEEEEeCCHHHHHHHHH
Confidence 35678888887766555433222 355655455566666655
No 75
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=28.37 E-value=38 Score=31.17 Aligned_cols=63 Identities=19% Similarity=0.310 Sum_probs=32.9
Q ss_pred ccEEEEeCCCCCCC--CCCCchhHH-----------HHHHHHHhhcCCCCceEEEecCChhHHHHH----------HHhh
Q 021206 228 WDLIMVDAPTGYHE--AAPGRMTAI-----------YTAGLMARNRESGETDVFVHDVDRVVEDKF----------SKAF 284 (316)
Q Consensus 228 WDvImVDgP~Gy~~--eaPGRM~AI-----------yTAavmARar~~g~TdVfVHDVdR~VE~~f----------s~EF 284 (316)
=|+|+||.+....+ +-.|+|+-. +.-.+....++.|.|=||+..+.+.++..| +++|
T Consensus 140 ~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~ 219 (349)
T 2zr9_A 140 LDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKF 219 (349)
T ss_dssp CSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHH
T ss_pred CCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhh
Confidence 48999999998874 323444321 111122122334778899999999888766 3688
Q ss_pred cccccc
Q 021206 285 LCEGYL 290 (316)
Q Consensus 285 LC~~nL 290 (316)
.|+--+
T Consensus 220 ~ad~~l 225 (349)
T 2zr9_A 220 YASVRL 225 (349)
T ss_dssp HCSEEE
T ss_pred ccceEE
Confidence 887533
No 76
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=28.33 E-value=25 Score=29.44 Aligned_cols=15 Identities=33% Similarity=0.711 Sum_probs=12.6
Q ss_pred ccccEEEEeCCCCCC
Q 021206 226 VEWDLIMVDAPTGYH 240 (316)
Q Consensus 226 ~eWDvImVDgP~Gy~ 240 (316)
-+.|+|+||+|.|..
T Consensus 109 ~~yD~viiD~~~~~~ 123 (263)
T 1hyq_A 109 ESTDILLLDAPAGLE 123 (263)
T ss_dssp HTCSEEEEECCSSSS
T ss_pred hhCCEEEEeCCCCCC
Confidence 368999999998765
No 77
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=28.05 E-value=1.3e+02 Score=24.60 Aligned_cols=58 Identities=12% Similarity=0.129 Sum_probs=43.9
Q ss_pred CcHHHHHHHHHHhhh---cCCccEEEeccCchhHhHhhhccCCceeEeccChhHHHHHHhh
Q 021206 113 QTVKEISVSLRVLAQ---KSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEK 170 (316)
Q Consensus 113 qt~~Ei~~~~~VL~~---raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~ 170 (316)
....++..+.++++. +.+-++|=+|-|...........|.+-+-+|-++..++..+++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~ 82 (252)
T 1wzn_A 22 RVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRK 82 (252)
T ss_dssp THHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Confidence 345677777778776 3567999998887776666666678888899999988877654
No 78
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=27.93 E-value=98 Score=23.07 Aligned_cols=42 Identities=12% Similarity=0.372 Sum_probs=26.4
Q ss_pred CCceeEeccChhHHHHHHhhCCCceeEEeeeccchhhHHHHHH
Q 021206 151 GGRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMN 193 (316)
Q Consensus 151 gGrTvFLEEd~~~i~~v~~~~P~leay~V~Y~T~v~eA~~LL~ 193 (316)
..+-+.+|+|+.....++...-.. -|.|..-....+|-++++
T Consensus 14 ~~~ILivdd~~~~~~~l~~~L~~~-g~~v~~~~~~~~a~~~l~ 55 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLSPL-PYTLHFARDATQALQLLA 55 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTS-SCEEEEESSHHHHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHhccc-CcEEEEECCHHHHHHHHH
Confidence 456778888887766555443322 366665566667777665
No 79
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=27.75 E-value=47 Score=22.73 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=22.3
Q ss_pred CceeEeccChhHHHHHHhhCCCceeEEeeeccchhhHHHHHH
Q 021206 152 GRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMN 193 (316)
Q Consensus 152 GrTvFLEEd~~~i~~v~~~~P~leay~V~Y~T~v~eA~~LL~ 193 (316)
.+-+.+|+|+.....++...-. ..|.|..-+...+|-++++
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~l~ 42 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTA-AGFKVIWLVDGSTALDQLD 42 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHH-TTCEEEEESCHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHh-CCcEEEEecCHHHHHHHHH
Confidence 4567788888776554432211 1245554445555655554
No 80
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=27.61 E-value=27 Score=32.47 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=25.6
Q ss_pred cccEEEEeCCCCCCC--CCCCchhH-----------HHHHHHHHhhcCCCCceEEEecCChhHHHHH
Q 021206 227 EWDLIMVDAPTGYHE--AAPGRMTA-----------IYTAGLMARNRESGETDVFVHDVDRVVEDKF 280 (316)
Q Consensus 227 eWDvImVDgP~Gy~~--eaPGRM~A-----------IyTAavmARar~~g~TdVfVHDVdR~VE~~f 280 (316)
.-|+|+||.+....+ +-.|+|+. =+.-.+..-.++-|.|=|+++.+.+.++..|
T Consensus 141 ~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~f 207 (356)
T 1u94_A 141 AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 207 (356)
T ss_dssp CCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC---------
T ss_pred CCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 468999999998875 22344431 1111122222334788899999999999876
No 81
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=27.60 E-value=44 Score=24.29 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=22.5
Q ss_pred ceeEeccChhHHHHHHhhCCCceeEEeeeccchhhHHHHHH
Q 021206 153 RTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMN 193 (316)
Q Consensus 153 rTvFLEEd~~~i~~v~~~~P~leay~V~Y~T~v~eA~~LL~ 193 (316)
+-+.+|+|+.....++...-. ..|.|..-....+|-++++
T Consensus 9 ~ilivdd~~~~~~~l~~~L~~-~~~~v~~~~~~~~a~~~l~ 48 (137)
T 3hdg_A 9 KILIVEDDTDAREWLSTIISN-HFPEVWSAGDGEEGERLFG 48 (137)
T ss_dssp CEEEECSCHHHHHHHHHHHHT-TCSCEEEESSHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHh-cCcEEEEECCHHHHHHHHh
Confidence 667788888776555433222 2344544455556666554
No 82
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=27.57 E-value=1.3e+02 Score=24.63 Aligned_cols=59 Identities=24% Similarity=0.249 Sum_probs=40.2
Q ss_pred cCcHHHHHH-HHHHhhhcCCccEEEeccCchhHhHhhhccCCceeEeccChhHHHHHHhh
Q 021206 112 QQTVKEISV-SLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEK 170 (316)
Q Consensus 112 qqt~~Ei~~-~~~VL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~ 170 (316)
.++..|+.. +...+.-+..-.+|-+|-|.-.+.-.....+++.+-+|-++..++.++++
T Consensus 37 ~~~~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~ 96 (204)
T 3njr_A 37 QITKSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKN 96 (204)
T ss_dssp CCCCHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence 566666653 44455556667899998876655433333388888899999988877654
No 83
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=27.27 E-value=19 Score=29.50 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=13.0
Q ss_pred cccEEEEeCCCCCCC
Q 021206 227 EWDLIMVDAPTGYHE 241 (316)
Q Consensus 227 eWDvImVDgP~Gy~~ 241 (316)
+.|+|+||+|.|...
T Consensus 118 ~yD~viiD~p~~~~~ 132 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH 132 (245)
T ss_dssp HCSEEEEEEESSCCT
T ss_pred hCCEEEEeCCCCCch
Confidence 689999999998754
No 84
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=27.25 E-value=68 Score=23.37 Aligned_cols=42 Identities=12% Similarity=0.258 Sum_probs=23.1
Q ss_pred CCceeEeccChhHHHHHHhhCCCceeEEeeeccchhhHHHHHH
Q 021206 151 GGRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMN 193 (316)
Q Consensus 151 gGrTvFLEEd~~~i~~v~~~~P~leay~V~Y~T~v~eA~~LL~ 193 (316)
.-+-+.+|+|+.....++...-. .-|+|..-+...+|-++++
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~a~~~l~ 45 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEK-DGFNVIWAKNEQEAFTFLR 45 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGG-GTCEEEEESSHHHHHHHHT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHh
Confidence 34677888888776555533222 2355554444455555443
No 85
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=26.84 E-value=79 Score=29.51 Aligned_cols=54 Identities=19% Similarity=0.299 Sum_probs=25.1
Q ss_pred ccEEEEeCCCCCCC--CCCCchhH-----------HHHHHHHHhhcCCCCceEEEecCChhHHHHHH
Q 021206 228 WDLIMVDAPTGYHE--AAPGRMTA-----------IYTAGLMARNRESGETDVFVHDVDRVVEDKFS 281 (316)
Q Consensus 228 WDvImVDgP~Gy~~--eaPGRM~A-----------IyTAavmARar~~g~TdVfVHDVdR~VE~~fs 281 (316)
=|+|+||....+.+ +-.|+|+. -+.-.+..-+++.+.+=|+++.+.|.++..|.
T Consensus 153 ~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~fg 219 (366)
T 1xp8_A 153 IDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYG 219 (366)
T ss_dssp CSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC---------
T ss_pred CCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCcccC
Confidence 48999999998875 33455431 11112222234457778999999999987663
No 86
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=26.73 E-value=25 Score=30.25 Aligned_cols=54 Identities=17% Similarity=0.262 Sum_probs=32.7
Q ss_pred CccCcHHHHHHHHHHhhhcCCccEEEe-----ccCchhH----hHhhhccCCceeEeccChhH
Q 021206 110 TPQQTVKEISVSLRVLAQKSPCNFLVF-----GLGYDSL----MWSALNHGGRTLFLEEDKSW 163 (316)
Q Consensus 110 tpqqt~~Ei~~~~~VL~~raPCNfLVF-----GLg~dsl----mW~aLN~gGrTvFLEEd~~~ 163 (316)
+.+...+.+..+.+.++.+...=.++. |-|.-++ .+..-..|-|++.+|-|+..
T Consensus 15 ~~~~~~~~~~~~~r~~~~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~ 77 (298)
T 2oze_A 15 MEKEELKILEELRRILSNKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQA 77 (298)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred hhhhhHHHHHHHHHHhcCCCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 445556667777777776654433333 4565543 23222456699999988874
No 87
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=26.56 E-value=1.2e+02 Score=24.45 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhhcCCccEEEeccCchhHhHhhhccCC-ceeEeccChhHHHHHHhhCC
Q 021206 116 KEISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHGG-RTLFLEEDKSWINQIKEKFP 172 (316)
Q Consensus 116 ~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~aLN~gG-rTvFLEEd~~~i~~v~~~~P 172 (316)
.+...+...+....+-++|-+|-|...........|. +.+-+|-++..++..+++..
T Consensus 30 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~ 87 (243)
T 3bkw_A 30 AEWPALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGP 87 (243)
T ss_dssp TTHHHHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSC
T ss_pred HhHHHHHHhccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcc
Confidence 3455677777777788999998887666655555565 78888999999988887754
No 88
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=26.32 E-value=70 Score=22.84 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=22.7
Q ss_pred ceeEeccChhHHHHHHhhCCCceeEEeeeccchhhHHHHHH
Q 021206 153 RTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMN 193 (316)
Q Consensus 153 rTvFLEEd~~~i~~v~~~~P~leay~V~Y~T~v~eA~~LL~ 193 (316)
+-+.+|+|+.....++...-. .-|+|..-+...+|-++++
T Consensus 5 ~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~~~~~a~~~l~ 44 (127)
T 3i42_A 5 QALIVEDYQAAAETFKELLEM-LGFQADYVMSGTDALHAMS 44 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHH-TTEEEEEESSHHHHHHHHH
T ss_pred eEEEEcCCHHHHHHHHHHHHH-cCCCEEEECCHHHHHHHHH
Confidence 456788888765544432111 1356665566666666665
No 89
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=26.24 E-value=27 Score=31.49 Aligned_cols=34 Identities=12% Similarity=0.275 Sum_probs=21.4
Q ss_pred CCccEEEe----ccCchhH----hHhhhccCCceeEeccChh
Q 021206 129 SPCNFLVF----GLGYDSL----MWSALNHGGRTLFLEEDKS 162 (316)
Q Consensus 129 aPCNfLVF----GLg~dsl----mW~aLN~gGrTvFLEEd~~ 162 (316)
..-.++|| |.|.-+. .++.-..|-||+.+|-|+.
T Consensus 17 ~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 17 TSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp TTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 34456777 5666543 3333345669999998875
No 90
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=26.16 E-value=30 Score=29.30 Aligned_cols=15 Identities=33% Similarity=0.729 Sum_probs=12.8
Q ss_pred ccccEEEEeCCCCCC
Q 021206 226 VEWDLIMVDAPTGYH 240 (316)
Q Consensus 226 ~eWDvImVDgP~Gy~ 240 (316)
-+.|+|+||+|.|..
T Consensus 110 ~~yD~iiiD~pp~~~ 124 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLS 124 (257)
T ss_dssp TTCSEEEEECCSSCC
T ss_pred cCCCEEEEeCCCCCC
Confidence 468999999999864
No 91
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=26.14 E-value=64 Score=23.20 Aligned_cols=40 Identities=10% Similarity=0.094 Sum_probs=22.6
Q ss_pred ceeEeccChhHHHHHHhhCCCceeEEee-eccchhhHHHHHH
Q 021206 153 RTLFLEEDKSWINQIKEKFPTLESYHVE-YDTKVNEADELMN 193 (316)
Q Consensus 153 rTvFLEEd~~~i~~v~~~~P~leay~V~-Y~T~v~eA~~LL~ 193 (316)
+-+.+|+|+.....++...-... |.|. .-+...+|-++++
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~g-~~v~~~~~~~~~a~~~~~ 43 (134)
T 3f6c_A 3 NAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVE 43 (134)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTT-EEEEEEESSSTTHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHhhCC-cEEEEEcCCHHHHHHHHH
Confidence 35678888876555443322222 6654 4455667777666
No 92
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=25.91 E-value=88 Score=23.27 Aligned_cols=41 Identities=15% Similarity=0.134 Sum_probs=23.0
Q ss_pred ceeEeccChhHHHHHHhhCCCc-eeEEeeeccchhhHHHHHH
Q 021206 153 RTLFLEEDKSWINQIKEKFPTL-ESYHVEYDTKVNEADELMN 193 (316)
Q Consensus 153 rTvFLEEd~~~i~~v~~~~P~l-eay~V~Y~T~v~eA~~LL~ 193 (316)
+-+.+|+|+.....++...-.. ..|.|..-....+|-++++
T Consensus 22 ~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~ 63 (150)
T 4e7p_A 22 KVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLE 63 (150)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHT
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhh
Confidence 4677888887766555332211 2355655555556655554
No 93
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=25.83 E-value=26 Score=30.39 Aligned_cols=15 Identities=40% Similarity=0.771 Sum_probs=12.5
Q ss_pred ccccEEEEeCCCCCC
Q 021206 226 VEWDLIMVDAPTGYH 240 (316)
Q Consensus 226 ~eWDvImVDgP~Gy~ 240 (316)
-+.|+|+||+|.|..
T Consensus 102 ~~yD~viiD~p~~~~ 116 (286)
T 2xj4_A 102 AECDFILIDTPGGDS 116 (286)
T ss_dssp HHCSEEEEECCSSCC
T ss_pred hcCCEEEEcCCCCcc
Confidence 368999999998863
No 94
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=25.79 E-value=30 Score=28.64 Aligned_cols=14 Identities=29% Similarity=0.878 Sum_probs=12.1
Q ss_pred cccEEEEeCCCCCC
Q 021206 227 EWDLIMVDAPTGYH 240 (316)
Q Consensus 227 eWDvImVDgP~Gy~ 240 (316)
+.|+|+||+|.|..
T Consensus 113 ~yD~viiD~p~~~~ 126 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE 126 (260)
T ss_dssp TCSEEEEECCSSSS
T ss_pred CCCEEEEcCCCCCC
Confidence 67999999998774
No 95
>1jy4_A B4dimer; eight-stranded beta-sheet, disulfide bond, de novo protein design; HET: DPR; NMR {Synthetic} SCOP: k.35.1.1 PDB: 1jy6_A*
Probab=25.75 E-value=24 Score=23.76 Aligned_cols=10 Identities=40% Similarity=0.727 Sum_probs=7.7
Q ss_pred ceeeeEecCC
Q 021206 296 RIRHFVVPSH 305 (316)
Q Consensus 296 rLwHF~Ip~~ 305 (316)
.-|||++|+.
T Consensus 20 qkwhfvlpgy 29 (35)
T 1jy4_A 20 QKWHFVLPGY 29 (35)
T ss_dssp EEEEEEETTE
T ss_pred eeeEEecCCc
Confidence 3599999863
No 96
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=25.68 E-value=1.3e+02 Score=23.19 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=28.0
Q ss_pred cEEEeccCchh-HhHhhhc-cCCceeEeccChhHHHHHHh
Q 021206 132 NFLVFGLGYDS-LMWSALN-HGGRTLFLEEDKSWINQIKE 169 (316)
Q Consensus 132 NfLVFGLg~ds-lmW~aLN-~gGrTvFLEEd~~~i~~v~~ 169 (316)
+++|+|+|.=. .+-..|. .|-..+-+|.|++.++.+++
T Consensus 9 ~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~ 48 (140)
T 3fwz_A 9 HALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE 48 (140)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Confidence 68999999743 3333443 46678888999999888876
No 97
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=25.13 E-value=1.4e+02 Score=21.86 Aligned_cols=45 Identities=13% Similarity=0.107 Sum_probs=22.7
Q ss_pred ccCCceeEeccChhHHHHHHhhCCCceeEEe-eeccchhhHHHHHH
Q 021206 149 NHGGRTLFLEEDKSWINQIKEKFPTLESYHV-EYDTKVNEADELMN 193 (316)
Q Consensus 149 N~gGrTvFLEEd~~~i~~v~~~~P~leay~V-~Y~T~v~eA~~LL~ 193 (316)
+++.+-+.+|+|+.....++...-....|++ ..-....+|-++++
T Consensus 11 ~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~ 56 (145)
T 3kyj_B 11 GSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLA 56 (145)
T ss_dssp CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHH
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHh
Confidence 4455556666666655544433222223453 33445566666655
No 98
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=25.10 E-value=24 Score=29.31 Aligned_cols=15 Identities=13% Similarity=0.279 Sum_probs=12.6
Q ss_pred ccccEEEEeCCCC-CC
Q 021206 226 VEWDLIMVDAPTG-YH 240 (316)
Q Consensus 226 ~eWDvImVDgP~G-y~ 240 (316)
-++|+|+||.|.| ..
T Consensus 66 ~~yD~viiD~p~~~~~ 81 (209)
T 3cwq_A 66 PKYQNIVIDTQARPED 81 (209)
T ss_dssp GGCSEEEEEEECCCSS
T ss_pred hcCCEEEEeCCCCcCc
Confidence 4689999999998 54
No 99
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=25.05 E-value=2.4e+02 Score=22.09 Aligned_cols=52 Identities=13% Similarity=0.086 Sum_probs=40.1
Q ss_pred HHHHHHHhhh-cCCccEEEeccCchhHhHhhhccCCceeEeccChhHHHHHHh
Q 021206 118 ISVSLRVLAQ-KSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKE 169 (316)
Q Consensus 118 i~~~~~VL~~-raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~ 169 (316)
+..+.+.|.+ ...-++|-+|-|...+.-.....|.+-+-+|-++..++..++
T Consensus 34 ~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~ 86 (218)
T 3ou2_A 34 APAALERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR 86 (218)
T ss_dssp HHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh
Confidence 5566667765 445799999988877776666668888889999998888876
No 100
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=24.62 E-value=1.5e+02 Score=22.88 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=35.9
Q ss_pred HHHHhhhcCCccEEEeccCchhHhHhhhccCCceeEeccChhHHHHHHhh
Q 021206 121 SLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEK 170 (316)
Q Consensus 121 ~~~VL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~ 170 (316)
+.+.+....+-++|-+|-|...........|.+.+-+|-++..++.++++
T Consensus 24 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~ 73 (199)
T 2xvm_A 24 VLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERI 73 (199)
T ss_dssp HHHHTTTSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHhhccCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Confidence 44556666788999998877665555455577888888888888776654
No 101
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=24.52 E-value=31 Score=31.41 Aligned_cols=34 Identities=15% Similarity=0.329 Sum_probs=20.8
Q ss_pred CCcc-EEEe----ccCchh----HhHhhhccCCceeEeccChh
Q 021206 129 SPCN-FLVF----GLGYDS----LMWSALNHGGRTLFLEEDKS 162 (316)
Q Consensus 129 aPCN-fLVF----GLg~ds----lmW~aLN~gGrTvFLEEd~~ 162 (316)
.+.. ++|| |-|.-+ +.+..-..|-|++.++-|+.
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 65 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA 65 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3444 4444 445544 33444456889999998885
No 102
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=24.41 E-value=27 Score=31.96 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=28.7
Q ss_pred CcHHHHHHHHHHhh------hcCCccEEEe-----ccCchh----HhHhhh------ccCCceeEeccChh
Q 021206 113 QTVKEISVSLRVLA------QKSPCNFLVF-----GLGYDS----LMWSAL------NHGGRTLFLEEDKS 162 (316)
Q Consensus 113 qt~~Ei~~~~~VL~------~raPCNfLVF-----GLg~ds----lmW~aL------N~gGrTvFLEEd~~ 162 (316)
.|.+|+..+.+... ....+..++| |-|.-+ |.|..- ..|-|++.+|=|+.
T Consensus 87 ~~~~~v~~~~~~~~~~~~r~~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~ 157 (403)
T 3ez9_A 87 LTIQNVIDIYAHRKIPKYRDIHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQ 157 (403)
T ss_dssp BCHHHHHHHHHHTTCCCHHHHSCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSS
T ss_pred cCHHHHHHHHHHhccCCcCCCCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 47888888776632 1246777666 445443 223222 56889999998874
No 103
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=24.38 E-value=28 Score=29.40 Aligned_cols=15 Identities=20% Similarity=0.510 Sum_probs=12.4
Q ss_pred ccccEEEEeCCCCCC
Q 021206 226 VEWDLIMVDAPTGYH 240 (316)
Q Consensus 226 ~eWDvImVDgP~Gy~ 240 (316)
-+.|+|+||+|.|..
T Consensus 143 ~~yD~viiD~pp~~~ 157 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD 157 (267)
T ss_dssp TTCSEEEEEECSSCS
T ss_pred cCCCEEEEECcCCcc
Confidence 458999999998763
No 104
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=24.33 E-value=92 Score=23.87 Aligned_cols=41 Identities=17% Similarity=0.108 Sum_probs=22.0
Q ss_pred ceeEeccChhHHHHHHhhCCCc-eeEEeeeccchhhHHHHHH
Q 021206 153 RTLFLEEDKSWINQIKEKFPTL-ESYHVEYDTKVNEADELMN 193 (316)
Q Consensus 153 rTvFLEEd~~~i~~v~~~~P~l-eay~V~Y~T~v~eA~~LL~ 193 (316)
+-+.+|+|+.....++...-.. ..+.|..-....+|-++++
T Consensus 27 ~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~ 68 (164)
T 3t8y_A 27 RVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAI 68 (164)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhc
Confidence 5677888887765555332222 1233434455556665555
No 105
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=24.00 E-value=24 Score=32.47 Aligned_cols=33 Identities=12% Similarity=0.270 Sum_probs=21.0
Q ss_pred CccEEEe----ccCchhH----hHhhh--ccCCceeEeccChh
Q 021206 130 PCNFLVF----GLGYDSL----MWSAL--NHGGRTLFLEEDKS 162 (316)
Q Consensus 130 PCNfLVF----GLg~dsl----mW~aL--N~gGrTvFLEEd~~ 162 (316)
+--++|+ |.|.-+. .++.- ..|-|++.++-|+.
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~ 59 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA 59 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 3456677 5666542 33333 56779999998874
No 106
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=23.80 E-value=1.6e+02 Score=23.20 Aligned_cols=48 Identities=13% Similarity=0.030 Sum_probs=34.0
Q ss_pred HhhhcCCccEEEeccCchhHhHhhhccCCceeEeccChhHHHHHHhhC
Q 021206 124 VLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKF 171 (316)
Q Consensus 124 VL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~ 171 (316)
.+....|-++|-+|-|...+.......|.+.+-+|-++..++.++++.
T Consensus 24 ~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~ 71 (202)
T 2kw5_A 24 VANQIPQGKILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLA 71 (202)
T ss_dssp HHHHSCSSEEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHH
T ss_pred HHHhCCCCCEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHH
Confidence 333333449999988877666555566778888888888888777653
No 107
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=23.66 E-value=63 Score=23.19 Aligned_cols=41 Identities=20% Similarity=0.318 Sum_probs=19.8
Q ss_pred CCceeEeccChhHHHHHHhhCCCceeEEeeeccchhhHHHHH
Q 021206 151 GGRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELM 192 (316)
Q Consensus 151 gGrTvFLEEd~~~i~~v~~~~P~leay~V~Y~T~v~eA~~LL 192 (316)
+.+-+.+|+|+.....++...-.. .|+|..-+...+|-+++
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~-g~~v~~~~~~~~a~~~l 47 (130)
T 3eod_A 7 GKQILIVEDEQVFRSLLDSWFSSL-GATTVLAADGVDALELL 47 (130)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHT-TCEEEEESCHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhC-CceEEEeCCHHHHHHHH
Confidence 346677888887655444321111 24444433344444444
No 108
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=23.66 E-value=1.4e+02 Score=23.79 Aligned_cols=54 Identities=13% Similarity=0.092 Sum_probs=35.7
Q ss_pred HHHHHHHHhhhcCCccEEEeccCchhHhHhhhccC---CceeEeccChhHHHHHHhh
Q 021206 117 EISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHG---GRTLFLEEDKSWINQIKEK 170 (316)
Q Consensus 117 Ei~~~~~VL~~raPCNfLVFGLg~dslmW~aLN~g---GrTvFLEEd~~~i~~v~~~ 170 (316)
-+..+.+.+..+..-++|.+|-|.-.+.......+ ++-+-+|-++..++..+++
T Consensus 65 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~ 121 (215)
T 2yxe_A 65 MVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERT 121 (215)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence 34445555555667799999887665544444433 6778888888887776654
No 109
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=23.63 E-value=75 Score=23.61 Aligned_cols=45 Identities=13% Similarity=0.070 Sum_probs=24.1
Q ss_pred ccCCceeEeccChhHHHHHHhhCCCceeEE-eeeccchhhHHHHHH
Q 021206 149 NHGGRTLFLEEDKSWINQIKEKFPTLESYH-VEYDTKVNEADELMN 193 (316)
Q Consensus 149 N~gGrTvFLEEd~~~i~~v~~~~P~leay~-V~Y~T~v~eA~~LL~ 193 (316)
+.+.+-+.+|+|+.....++...-...-+. |..-....+|-++++
T Consensus 13 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~ 58 (152)
T 3eul_A 13 PEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIK 58 (152)
T ss_dssp -CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHH
T ss_pred CceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHH
Confidence 345567788888877655543322222222 334455566666665
No 110
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=23.44 E-value=82 Score=22.85 Aligned_cols=42 Identities=12% Similarity=0.265 Sum_probs=23.6
Q ss_pred CCceeEeccChhHHHHHHhhCCCceeEEeeeccchhhHHHHHH
Q 021206 151 GGRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMN 193 (316)
Q Consensus 151 gGrTvFLEEd~~~i~~v~~~~P~leay~V~Y~T~v~eA~~LL~ 193 (316)
..+-+.+|+|+.....++...-.. -|+|..-+...+|-++++
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~-g~~v~~~~~~~~a~~~l~ 48 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDA-GFHIISADSGGQCIDLLK 48 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHT-TCEEEEESSHHHHHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHC-CeEEEEeCCHHHHHHHHH
Confidence 456778888887655444321111 255655555666666665
No 111
>4ep8_A Urease subunit gamma; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_A 1a5k_A 1a5n_A 1a5o_A 1ef2_C* 1ejr_A* 1ejs_A* 1ejt_A* 1eju_A* 1ejv_A* 1a5m_A* 1ejw_A* 1fwa_A* 1fwb_A* 1fwc_A* 1fwd_A* 1fwe_A* 1fwf_A* 1fwg_A* 1fwh_A* ...
Probab=23.31 E-value=19 Score=29.54 Aligned_cols=14 Identities=36% Similarity=0.567 Sum_probs=12.1
Q ss_pred HHHHHHHHHhhcCC
Q 021206 249 AIYTAGLMARNRES 262 (316)
Q Consensus 249 AIyTAavmARar~~ 262 (316)
-||+||.+||.|+.
T Consensus 12 li~~aa~lA~rR~~ 25 (100)
T 4ep8_A 12 LLFTAALVAERRLA 25 (100)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 58999999999864
No 112
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=23.26 E-value=1.2e+02 Score=22.55 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=25.1
Q ss_pred CceeEeccChhHHHHHHhhCCCceeEEeeeccchhhHHHHHH
Q 021206 152 GRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMN 193 (316)
Q Consensus 152 GrTvFLEEd~~~i~~v~~~~P~leay~V~Y~T~v~eA~~LL~ 193 (316)
-+-+.+|+|+.....++...-. .|.|..-....+|-++++
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~--~~~v~~~~~~~~a~~~l~ 44 (151)
T 3kcn_A 5 ERILLVDDDYSLLNTLKRNLSF--DFEVTTCESGPEALACIK 44 (151)
T ss_dssp CEEEEECSCHHHHHHHHHHHTT--TSEEEEESSHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHhcc--CceEEEeCCHHHHHHHHH
Confidence 4667888888876655544322 366665556666766665
No 113
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=23.26 E-value=97 Score=22.60 Aligned_cols=39 Identities=10% Similarity=0.245 Sum_probs=21.7
Q ss_pred ceeEeccChhHHHHHHhhCCCceeEEeeeccchhhHHHHHH
Q 021206 153 RTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMN 193 (316)
Q Consensus 153 rTvFLEEd~~~i~~v~~~~P~leay~V~Y~T~v~eA~~LL~ 193 (316)
+-+.+|+|+.....++...-. . |.|..-+...+|-+++.
T Consensus 3 ~Ilivdd~~~~~~~l~~~l~~-~-~~v~~~~~~~~a~~~~~ 41 (139)
T 2jk1_A 3 AILLVDDEPHSLAAMKLALED-D-FDVLTAQGAEAAIAILE 41 (139)
T ss_dssp EEEEECSSHHHHHHHHHHHTT-T-SCEEEESSHHHHHHHHH
T ss_pred eEEEEcCCHHHHHHHHHHhhc-C-ceEEEcCCHHHHHHHHh
Confidence 456778888766555543322 1 55554444555555554
No 114
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=22.92 E-value=29 Score=31.63 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=33.3
Q ss_pred CcHHHHHHHHHHhh------hcCCccEEEe-----ccCchh----HhHhhh------ccCCceeEeccChh
Q 021206 113 QTVKEISVSLRVLA------QKSPCNFLVF-----GLGYDS----LMWSAL------NHGGRTLFLEEDKS 162 (316)
Q Consensus 113 qt~~Ei~~~~~VL~------~raPCNfLVF-----GLg~ds----lmW~aL------N~gGrTvFLEEd~~ 162 (316)
+|.+++..+.+.+. ...++..++| |-|.-+ |.|..- ..|-|++.+|=|+.
T Consensus 84 ~~~~~i~~~~~~~~~~~~~~~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q 154 (398)
T 3ez2_A 84 MSIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQ 154 (398)
T ss_dssp BCHHHHHHHHHHTTCCCGGGTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTT
T ss_pred CCHHHHHHHHHHhcccccCcCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 48999998888763 2345777766 455544 233322 46889999998874
No 115
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=22.77 E-value=50 Score=24.11 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=12.4
Q ss_pred cCCceeEeccChhHHHHHH
Q 021206 150 HGGRTLFLEEDKSWINQIK 168 (316)
Q Consensus 150 ~gGrTvFLEEd~~~i~~v~ 168 (316)
++.+-+.+|+|+.....++
T Consensus 14 ~~~~ilivdd~~~~~~~l~ 32 (138)
T 2b4a_A 14 QPFRVTLVEDEPSHATLIQ 32 (138)
T ss_dssp CCCEEEEECSCHHHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHH
Confidence 4556677888887655444
No 116
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=22.59 E-value=1.6e+02 Score=23.74 Aligned_cols=59 Identities=14% Similarity=0.128 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhh-cCCccEEEeccCchhHhHhhh--ccCCceeEeccChhHHHHHHhhCCC
Q 021206 115 VKEISVSLRVLAQ-KSPCNFLVFGLGYDSLMWSAL--NHGGRTLFLEEDKSWINQIKEKFPT 173 (316)
Q Consensus 115 ~~Ei~~~~~VL~~-raPCNfLVFGLg~dslmW~aL--N~gGrTvFLEEd~~~i~~v~~~~P~ 173 (316)
...+..+.+.+.. ..+-++|=+|-|......... .++++.+-+|-++..++.++++.+.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 90 (234)
T 3dtn_A 29 DDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG 90 (234)
T ss_dssp HHHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhcc
Confidence 3444666666663 567899999887665554444 4477888999999998888877654
No 117
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=22.43 E-value=1.9e+02 Score=22.88 Aligned_cols=53 Identities=13% Similarity=0.031 Sum_probs=36.2
Q ss_pred HHHHHHHhhhcCCccEEEeccCchhHhHhhhccCCceeEeccChhHHHHHHhh
Q 021206 118 ISVSLRVLAQKSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEK 170 (316)
Q Consensus 118 i~~~~~VL~~raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~ 170 (316)
+..+...+..+.+-++|-+|-|.-...-.....+++-+-+|-++..++.++++
T Consensus 66 ~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~ 118 (210)
T 3lbf_A 66 VARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRR 118 (210)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHH
Confidence 44445555557788999998876554433333477888888888888776654
No 118
>4fur_A Urease subunit gamma 2; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Brucella melitensis biovar abortus}
Probab=22.34 E-value=20 Score=29.53 Aligned_cols=14 Identities=21% Similarity=0.142 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhcCC
Q 021206 249 AIYTAGLMARNRES 262 (316)
Q Consensus 249 AIyTAavmARar~~ 262 (316)
-||+||.+||.|+.
T Consensus 16 li~~aa~lA~rR~~ 29 (104)
T 4fur_A 16 VIHMLSDVALKRKN 29 (104)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 59999999999864
No 119
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=21.70 E-value=3e+02 Score=21.78 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=43.5
Q ss_pred HHHHHHHHhhh-cCCccEEEeccCchhHhHhhhccCCceeEeccChhHHHHHHhhCC
Q 021206 117 EISVSLRVLAQ-KSPCNFLVFGLGYDSLMWSALNHGGRTLFLEEDKSWINQIKEKFP 172 (316)
Q Consensus 117 Ei~~~~~VL~~-raPCNfLVFGLg~dslmW~aLN~gGrTvFLEEd~~~i~~v~~~~P 172 (316)
....+.+.|.+ ..+.++|=+|=|...+.-.....|.+.+-+|-++..++.++++.+
T Consensus 29 ~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~ 85 (250)
T 2p7i_A 29 MHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK 85 (250)
T ss_dssp HHHHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhh
Confidence 34556666665 567899999988877766666677788899999999999888766
No 120
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=21.58 E-value=3e+02 Score=21.72 Aligned_cols=85 Identities=15% Similarity=0.196 Sum_probs=55.2
Q ss_pred cCcHHHHHHHHHHhhhcCCccEEEeccCchhHhH----hhhccCCcee-EeccC-hhHHHHHHhhCCCceeEEeeeccch
Q 021206 112 QQTVKEISVSLRVLAQKSPCNFLVFGLGYDSLMW----SALNHGGRTL-FLEED-KSWINQIKEKFPTLESYHVEYDTKV 185 (316)
Q Consensus 112 qqt~~Ei~~~~~VL~~raPCNfLVFGLg~dslmW----~aLN~gGrTv-FLEEd-~~~i~~v~~~~P~leay~V~Y~T~v 185 (316)
+...+++..+.+.|.+. . ++.|||.|.....= ..|+.-|..+ ++.++ ..+......-.++--..-+.|.-.-
T Consensus 23 ~l~~~~l~~~~~~i~~a-~-~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t 100 (187)
T 3sho_A 23 QTQPEAIEAAVEAICRA-D-HVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLRPTDLMIGVSVWRYL 100 (187)
T ss_dssp TCCHHHHHHHHHHHHHC-S-EEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCCTTEEEEEECCSSCC
T ss_pred hCCHHHHHHHHHHHHhC-C-EEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCCCCCEEEEEeCCCCC
Confidence 45678888888888763 2 99999999866532 2334455555 44424 4555555555666666667777666
Q ss_pred hhHHHHHHHcCCC
Q 021206 186 NEADELMNAVGSD 198 (316)
Q Consensus 186 ~eA~~LL~~~r~~ 198 (316)
.+.-++++.+|+.
T Consensus 101 ~~~~~~~~~ak~~ 113 (187)
T 3sho_A 101 RDTVAALAGAAER 113 (187)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC
Confidence 7777777766653
No 121
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=21.36 E-value=48 Score=28.70 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=28.7
Q ss_pred hHhhhccCCceeEe------ccChhHHHHHHhhCCCceeEEe
Q 021206 144 MWSALNHGGRTLFL------EEDKSWINQIKEKFPTLESYHV 179 (316)
Q Consensus 144 mW~aLN~gGrTvFL------EEd~~~i~~v~~~~P~leay~V 179 (316)
+|..|++||+-||- +|++.-|+.+.+++|+.+.-.+
T Consensus 197 ~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~~~~~~~~~~ 238 (274)
T 3ajd_A 197 GIDLLKKDGELVYSTCSMEVEENEEVIKYILQKRNDVELIII 238 (274)
T ss_dssp HHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHHCSSEEEECC
T ss_pred HHHhCCCCCEEEEEECCCChHHhHHHHHHHHHhCCCcEEecC
Confidence 36678899998873 4899999999999998776443
No 122
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=21.30 E-value=40 Score=24.73 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=12.1
Q ss_pred CCceeEeccChhHHHHHH
Q 021206 151 GGRTLFLEEDKSWINQIK 168 (316)
Q Consensus 151 gGrTvFLEEd~~~i~~v~ 168 (316)
.-+-+.+|+|+.....++
T Consensus 4 ~~~ilivdd~~~~~~~l~ 21 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTK 21 (140)
T ss_dssp CCEEEEECSCHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHH
Confidence 346677888887655544
No 123
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=20.94 E-value=81 Score=22.90 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=23.6
Q ss_pred CCceeEeccChhHHHHHHhhCCCceeEEeeeccchhhHHHHHH
Q 021206 151 GGRTLFLEEDKSWINQIKEKFPTLESYHVEYDTKVNEADELMN 193 (316)
Q Consensus 151 gGrTvFLEEd~~~i~~v~~~~P~leay~V~Y~T~v~eA~~LL~ 193 (316)
.-+-+.+|+|+.....++...-. ..|.|..-....+|-++++
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~-~g~~v~~~~~~~~a~~~l~ 47 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEK-GGFDSDMVHSAAQALEQVA 47 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHH-TTCEEEEECSHHHHHHHHH
T ss_pred CCCEEEEcCCHHHHHHHHHHHHH-CCCeEEEECCHHHHHHHHH
Confidence 44677888888776554432111 1245555455566666665
No 124
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=20.58 E-value=1.3e+02 Score=22.71 Aligned_cols=39 Identities=18% Similarity=0.366 Sum_probs=27.2
Q ss_pred cEEEeccCch--hHhHhhhccCCceeEeccChhHHHHHHhh
Q 021206 132 NFLVFGLGYD--SLMWSALNHGGRTLFLEEDKSWINQIKEK 170 (316)
Q Consensus 132 NfLVFGLg~d--slmW~aLN~gGrTvFLEEd~~~i~~v~~~ 170 (316)
+++|+|.|.= .+.-.-...|-..+-+|.|++.++.+++.
T Consensus 8 ~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~ 48 (141)
T 3llv_A 8 EYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE 48 (141)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC
Confidence 6999999873 23323334566777889999988887764
No 125
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=20.29 E-value=57 Score=23.55 Aligned_cols=44 Identities=18% Similarity=0.346 Sum_probs=22.0
Q ss_pred cCCceeEeccChhHHHHHHhhCCCceeEE-eeeccchhhHHHHHH
Q 021206 150 HGGRTLFLEEDKSWINQIKEKFPTLESYH-VEYDTKVNEADELMN 193 (316)
Q Consensus 150 ~gGrTvFLEEd~~~i~~v~~~~P~leay~-V~Y~T~v~eA~~LL~ 193 (316)
.+-+-+.+|+|+.....++...-...-|. |..-....+|-++++
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~ 51 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLH 51 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHH
Confidence 44567778888876554443221111233 444445556655555
Done!