BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021207
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 168 bits (425), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 138/297 (46%), Gaps = 30/297 (10%)
Query: 37 FYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEK 96
FY TCP A I+R ++ + S +R FHDC V CDAS+LLD T SEK
Sbjct: 7 FYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGSIQSEK 66
Query: 97 EMDRSF-GMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRD 155
+ R F ++NIK A+E CPGVVSC+D+L L+ V GGP + GRRD
Sbjct: 67 NAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVLLGRRD 126
Query: 156 GRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEV----------------- 198
+ +P +S+S + +F+A+G++ LVAL
Sbjct: 127 SLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVFNNRLFN 186
Query: 199 -------DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGL 251
DP LN + + CP + A D TP DNNY+ N+ N GL
Sbjct: 187 FSGTGNPDPTLNSTLLSTLQQLCPQ---NGSASTITNLDLSTPDAFDNNYFANLQSNDGL 243
Query: 252 MMVDHQL--ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVC 306
+ D +L T T V A +Q FF+ F++++ + +PLTG+ GEIR C
Sbjct: 244 LQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDC 300
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 167 bits (423), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 107/304 (35%), Positives = 162/304 (53%), Gaps = 29/304 (9%)
Query: 31 PGLVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTR 90
PGL +FY TCP+AE I+RE V+ ++ A LR FHDC VQ CDAS+LLD +
Sbjct: 7 PGLSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSA 66
Query: 91 KTLSEKEMDRSFGMR--NFRYIENIKEAVERECPG-VVSCADILVLSGRDGVVALGGPYI 147
E++ + +R F+ + +I++ +EREC G VVSC+DIL L+ RD VV GGP
Sbjct: 67 TGPGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDY 126
Query: 148 PLKTGRRDGRK--SRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALL--------- 196
+ GRRD R S ++L LP + ++ +L +G+DA LV +
Sbjct: 127 RVPLGRRDSRSFASTQDVLSD-LPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAH 185
Query: 197 ----------EVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL 246
DP ++P + + CP D + V VR TP V DN YY +++
Sbjct: 186 CSSFEDRLFPRPDPTISPTFLSRLKRTCPAKGTDRRTVLDVR----TPNVFDNKYYIDLV 241
Query: 247 DNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVC 306
+ +GL + D L T+ TRP V++ A+SQ FF++F +I + + T +GE+R+ C
Sbjct: 242 NREGLFVSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTSDQGEVRRNC 301
Query: 307 NLAN 310
++ N
Sbjct: 302 SVRN 305
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 140/305 (45%), Gaps = 30/305 (9%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY TCP A ++R V+ ++ S +R FHDC V CDAS+LLD++
Sbjct: 4 LNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGSI 63
Query: 93 LSEKEMD-RSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKT 151
+SEK + R F ++NIK A+E CPGVVSC D+L L+ + V GGP +
Sbjct: 64 ISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVDL 123
Query: 152 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEV------------- 198
GRRD + +P +S + +F+A+G++ LVAL
Sbjct: 124 GRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVFSN 183
Query: 199 -----------DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILD 247
DP LN + + CP + D TP DNNY+ N+
Sbjct: 184 RLFNFSGKGNPDPTLNTTLLSTLQELCPQ---KGRGSGSTNLDLSTPDAFDNNYFTNLQS 240
Query: 248 NKGLMMVDHQL--ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKV 305
N GL+ D +L T T V A +Q FF+ F++++ + +PLTG+ GEIR
Sbjct: 241 NNGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRLD 300
Query: 306 CNLAN 310
C N
Sbjct: 301 CKKTN 305
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 154 bits (388), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 131/296 (44%), Gaps = 21/296 (7%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L NFY CP A I+ V + S LR FHDC VQ CDAS+LLD T
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 93 LSEKEMD-RSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKT 151
EK + +R F I+ IK VE CPGVVSCADIL ++ RD VVALGG +
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 121
Query: 152 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVAL---------------- 195
GRRD + LP ++S ++ F+ G LV L
Sbjct: 122 GRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRT 181
Query: 196 -LEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMV 254
+ + ++P + + CP D + D TP DN YY N+ + KGL+
Sbjct: 182 RIYNESNIDPTYAKSLQANCPSVGGDTNLSPF---DVTTPNKFDNAYYINLRNKKGLLHS 238
Query: 255 DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 310
D QL T V + + F +F A+ + +PLTGT G+IR C N
Sbjct: 239 DQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 294
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 147 bits (371), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 104/319 (32%), Positives = 150/319 (47%), Gaps = 45/319 (14%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 62 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 118
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLE---------- 197
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL
Sbjct: 119 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCR 178
Query: 198 --------------VDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYR 243
DP LN ++ + CP + V D TP + DN YY
Sbjct: 179 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYV 235
Query: 244 NILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGT 298
N+ + KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT
Sbjct: 236 NLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGT 293
Query: 299 KGEIRKVCNLANK---LHD 314
+G+IR C + N LHD
Sbjct: 294 QGQIRLNCRVVNSNSLLHD 312
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 147/313 (46%), Gaps = 42/313 (13%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 63 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 119
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLE---------- 197
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL
Sbjct: 120 VPLGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCR 179
Query: 198 --------------VDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYR 243
DP LN ++ + CP + V D TP + DN YY
Sbjct: 180 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYV 236
Query: 244 NILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGT 298
N+ + KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT
Sbjct: 237 NLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGT 294
Query: 299 KGEIRKVCNLANK 311
+G+IR C + N
Sbjct: 295 QGQIRLNCRVVNS 307
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 147/313 (46%), Gaps = 42/313 (13%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 62 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 118
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLE---------- 197
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL
Sbjct: 119 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCR 178
Query: 198 --------------VDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYR 243
DP LN ++ + CP + V D TP + DN YY
Sbjct: 179 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYV 235
Query: 244 NILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGT 298
N+ + KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT
Sbjct: 236 NLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGT 293
Query: 299 KGEIRKVCNLANK 311
+G+IR C + N
Sbjct: 294 QGQIRLNCRVVNS 306
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 147/313 (46%), Gaps = 42/313 (13%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 63 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 119
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLE---------- 197
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL
Sbjct: 120 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCR 179
Query: 198 --------------VDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYR 243
DP LN ++ + CP + V D TP + DN YY
Sbjct: 180 SIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYV 236
Query: 244 NILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGT 298
N+ + KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT
Sbjct: 237 NLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGT 294
Query: 299 KGEIRKVCNLANK 311
+G+IR C + N
Sbjct: 295 QGQIRLNCRVVNS 307
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 147/313 (46%), Gaps = 42/313 (13%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 63 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 119
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLE---------- 197
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL
Sbjct: 120 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCR 179
Query: 198 --------------VDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYR 243
DP LN ++ + CP + V D TP + DN YY
Sbjct: 180 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDMDLRTPTIFDNKYYV 236
Query: 244 NILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGT 298
N+ + KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT
Sbjct: 237 NLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGT 294
Query: 299 KGEIRKVCNLANK 311
+G+IR C + N
Sbjct: 295 QGQIRLNCRVVNS 307
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 147/313 (46%), Gaps = 42/313 (13%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 62 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 118
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLE---------- 197
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL
Sbjct: 119 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCR 178
Query: 198 --------------VDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYR 243
DP LN ++ + CP + V D TP + DN YY
Sbjct: 179 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYV 235
Query: 244 NILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGT 298
N+ + KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT
Sbjct: 236 NLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGT 293
Query: 299 KGEIRKVCNLANK 311
+G+IR C + N
Sbjct: 294 QGQIRLNCRVVNS 306
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 143/308 (46%), Gaps = 46/308 (14%)
Query: 36 NFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSE 95
+ Y +CP I+R+QV + K A S +R FHDC V CDASLLLD SE
Sbjct: 5 DIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGAD---SE 61
Query: 96 K-EMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRR 154
K + R F I+ IK AVE CPGVVSCADIL L+ RD VV GGP + GR+
Sbjct: 62 KLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVALGRK 121
Query: 155 DGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVA------------------LL 196
DG + LP + + ++ +F A+ ++ +VA L
Sbjct: 122 DGLVANQNSANN-LPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVFSNRLF 180
Query: 197 EVDPALNPDH------VPHMLHKCP----DAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL 246
A NPD + ++ CP I P DR T DNNY++N+L
Sbjct: 181 NFTGAGNPDATLETSLLSNLQTVCPLGGNSNITAPL-------DRSTTDTFDNNYFKNLL 233
Query: 247 DNKGLMMVDHQLATD----KRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEI 302
+ KGL+ D L + T+ V+ ++SQ FF++F+ A ++ N G GE+
Sbjct: 234 EGKGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCA--MIRMGNISNGASGEV 291
Query: 303 RKVCNLAN 310
R C + N
Sbjct: 292 RTNCRVIN 299
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 147/313 (46%), Gaps = 42/313 (13%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 63 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 119
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLE---------- 197
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL
Sbjct: 120 VPLGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCR 179
Query: 198 --------------VDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYR 243
DP LN ++ + CP + V D TP + DN YY
Sbjct: 180 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYV 236
Query: 244 NILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGT 298
N+ + KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT
Sbjct: 237 NLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGT 294
Query: 299 KGEIRKVCNLANK 311
+G+IR C + N
Sbjct: 295 QGQIRLNCRVVNS 307
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 147/313 (46%), Gaps = 42/313 (13%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 62 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 118
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLE---------- 197
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL
Sbjct: 119 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCR 178
Query: 198 --------------VDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYR 243
DP LN ++ + CP + V D TP + DN YY
Sbjct: 179 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYV 235
Query: 244 NILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGT 298
N+ + KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT
Sbjct: 236 NLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGT 293
Query: 299 KGEIRKVCNLANK 311
+G+IR C + N
Sbjct: 294 QGQIRLNCRVVNS 306
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 147/313 (46%), Gaps = 42/313 (13%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 62 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 118
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLE---------- 197
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL
Sbjct: 119 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCR 178
Query: 198 --------------VDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYR 243
DP LN ++ + CP + V D TP + DN YY
Sbjct: 179 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYV 235
Query: 244 NILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGT 298
N+ + KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT
Sbjct: 236 NLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGT 293
Query: 299 KGEIRKVCNLANK 311
+G+IR C + N
Sbjct: 294 QGQIRLNCRVVNS 306
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 147/313 (46%), Gaps = 42/313 (13%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR FHDC V CDAS+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 63 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 119
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLE---------- 197
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL
Sbjct: 120 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCR 179
Query: 198 --------------VDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYR 243
DP LN ++ + CP + V D TP + DN YY
Sbjct: 180 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYV 236
Query: 244 NILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGT 298
N+ + KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT
Sbjct: 237 NLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGT 294
Query: 299 KGEIRKVCNLANK 311
+G+IR C + N
Sbjct: 295 QGQIRLNCRVVNS 307
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/313 (31%), Positives = 146/313 (46%), Gaps = 42/313 (13%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S LR F DC V CDAS+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTSF 62
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 63 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 119
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLE---------- 197
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL
Sbjct: 120 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCR 179
Query: 198 --------------VDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYR 243
DP LN ++ + CP + V D TP + DN YY
Sbjct: 180 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYV 236
Query: 244 NILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGT 298
N+ + KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT
Sbjct: 237 NLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGT 294
Query: 299 KGEIRKVCNLANK 311
+G+IR C + N
Sbjct: 295 QGQIRLNCRVVNS 307
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 140 bits (354), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 99/313 (31%), Positives = 145/313 (46%), Gaps = 42/313 (13%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY ++CP +I+R+ + + A S L F DC V CDAS+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTSF 61
Query: 93 LSEKEMDRSFG----MRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIP 148
+EK+ +FG R F I+ +K AVE CP VSCAD+L ++ + V GGP
Sbjct: 62 RTEKD---AFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWR 118
Query: 149 LKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID-APGLVALLE---------- 197
+ GRRD ++ ++ LP ++ + + F +G++ + LVAL
Sbjct: 119 VPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCR 178
Query: 198 --------------VDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYR 243
DP LN ++ + CP + V D TP + DN YY
Sbjct: 179 FIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYV 235
Query: 244 NILDNKGLMMVDHQL-----ATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGT 298
N+ + KGL+ D +L ATD T P V+ A S FF F A+ + PLTGT
Sbjct: 236 NLEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGT 293
Query: 299 KGEIRKVCNLANK 311
+G+IR C + N
Sbjct: 294 QGQIRLNCRVVNS 306
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 138 bits (348), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 94/304 (30%), Positives = 140/304 (46%), Gaps = 26/304 (8%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L + FY +CP AE ++++ V + + A +R FHDC V+ CDAS+LLDST
Sbjct: 2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61
Query: 93 LSEKE-MDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKT 151
+EK+ + + +R F I K AVE CP VSCADIL + RD G + +
Sbjct: 62 TAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPS 121
Query: 152 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVAL---------------- 195
GRRDG S A +P + + ++ FA + A +V L
Sbjct: 122 GRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTN 181
Query: 196 --------LEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILD 247
+DP L+P + + + CP + V D TP VLDN YY +
Sbjct: 182 RLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPIT-VSLDIITPSVLDNMYYTGVQL 240
Query: 248 NKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCN 307
GL+ D L T+ VK A + + +F++A+ + + LTGT+GEIR C+
Sbjct: 241 TLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCS 300
Query: 308 LANK 311
+ N
Sbjct: 301 VVNS 304
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 133/305 (43%), Gaps = 30/305 (9%)
Query: 33 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKT 92
L FY++TCP I+ + S +R FHDC VQ CD S+LL++T
Sbjct: 2 LTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTI 61
Query: 93 LSEKE-MDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKT 151
SE++ + +R + +IK AVE CP VSCADIL ++ V GGP P+
Sbjct: 62 ESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPL 121
Query: 152 GRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALL--------------- 196
GRRD + + Q LP +++ + FA G++ LV L
Sbjct: 122 GRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFIN 181
Query: 197 ---------EVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILD 247
DP LN ++ + +CP + D TP DN YY N+L
Sbjct: 182 RLYNFSNTGNPDPTLNTTYLEVLRARCPQ---NATGDNLTNLDLSTPDQFDNRYYSNLLQ 238
Query: 248 NKGLMMVDHQLAT--DKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKV 305
GL+ D +L + T P V + +Q+ FF F ++ + LTG +GEIR
Sbjct: 239 LNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQ 298
Query: 306 CNLAN 310
CN N
Sbjct: 299 CNFVN 303
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 82/189 (43%), Gaps = 28/189 (14%)
Query: 108 RYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQY 167
R +E IKE +VS AD L+G V GGP +P GR D + E
Sbjct: 78 RLLEPIKEQFP-----IVSYADFYQLAGVVAVEITGGPEVPFHPGREDKPEPPPE---GR 129
Query: 168 LPDHNDSMSVVLERFA-AIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDPKAVQY 226
LPD + + F A+G+ +VAL + H HK P +
Sbjct: 130 LPDATKGSDHLRDVFGKAMGLSDQDIVAL-------SGGHTIGAAHKERSGFEGP----W 178
Query: 227 VRNDRGTPMVLDNNYYRNILDNK--GLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEF 282
N P++ DN+Y+ +L + GL+ + D L TD RP V+K A +D FF ++
Sbjct: 179 TSN----PLIFDNSYFTELLTGEKDGLLQLPSDKALLTDSVFRPLVEKYAADEDVFFADY 234
Query: 283 SRAITLLSE 291
+ A LSE
Sbjct: 235 AEAHLKLSE 243
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 91/210 (43%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ L H+ + ++ P
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAH-TLGKTHLKNSGYEGP------ 190
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
+ N P V DN++Y N+L+ G MM+ D+ L D
Sbjct: 191 ----WTAN----PNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 91/210 (43%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ L H+ + ++ P
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAH-TLGKTHLKNSGYEGP------ 190
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
+ N+ V DN++Y N+L+ G MM+ D+ L D
Sbjct: 191 ----WTANNN----VFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 81/182 (44%), Gaps = 24/182 (13%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 93 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKG 148
Query: 175 MSVVLERFA-AIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGT 233
+ + F A+G+ +VAL + H HK P + N
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVAL-------SGGHTIGAAHKEASGFEGP----WTSN---- 193
Query: 234 PMVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLL 289
P++ DN+Y+ +L + +GL+ + D L +D RP V K A +D FF +++ A L
Sbjct: 194 PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 253
Query: 290 SE 291
SE
Sbjct: 254 SE 255
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 91/211 (43%), Gaps = 43/211 (20%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCP-DAIPD 220
+ LPD + V F + ++ +VAL+ L H+ + ++ P DA
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAH-TLGKTHLKNSGYEGPWDA--- 193
Query: 221 PKAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATD 261
T V DN++Y N+L+ G MM+ D+ L D
Sbjct: 194 ------------TNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQD 241
Query: 262 KRTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 242 PKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 81/182 (44%), Gaps = 24/182 (13%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 93 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKG 148
Query: 175 MSVVLERFA-AIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGT 233
+ + F A+G+ +VAL + H HK P + N
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVAL-------SGGHTIGAAHKERSGFEGP----WTSN---- 193
Query: 234 PMVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLL 289
P++ DN+Y+ +L + +GL+ + D L +D RP V K A +D FF +++ A L
Sbjct: 194 PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 253
Query: 290 SE 291
SE
Sbjct: 254 SE 255
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 81/182 (44%), Gaps = 24/182 (13%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 81 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKG 136
Query: 175 MSVVLERFA-AIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGT 233
+ + F A+G+ +VAL + H HK P + N
Sbjct: 137 SDHLRDVFGKAMGLTDQDIVAL-------SGGHTIGAAHKERSGFEGP----WTSN---- 181
Query: 234 PMVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLL 289
P++ DN+Y+ +L + +GL+ + D L +D RP V K A +D FF +++ A L
Sbjct: 182 PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 241
Query: 290 SE 291
SE
Sbjct: 242 SE 243
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 81/182 (44%), Gaps = 24/182 (13%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 81 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKG 136
Query: 175 MSVVLERFA-AIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGT 233
+ + F A+G+ +VAL + H HK P + N
Sbjct: 137 SDHLRDVFGKAMGLTDQDIVAL-------SGGHTIGAAHKERSGFEGP----WTSN---- 181
Query: 234 PMVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLL 289
P++ DN+Y+ +L + +GL+ + D L +D RP V K A +D FF +++ A L
Sbjct: 182 PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 241
Query: 290 SE 291
SE
Sbjct: 242 SE 243
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 81/182 (44%), Gaps = 24/182 (13%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 93 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKG 148
Query: 175 MSVVLERFA-AIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGT 233
+ + F A+G+ +VAL + H HK P + N
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVAL-------SGGHTIGAAHKERSGFEGP----WTSN---- 193
Query: 234 PMVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLL 289
P++ DN+Y+ +L + +GL+ + D L +D RP V K A +D FF +++ A L
Sbjct: 194 PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 253
Query: 290 SE 291
SE
Sbjct: 254 SE 255
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 81/182 (44%), Gaps = 24/182 (13%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 81 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKG 136
Query: 175 MSVVLERFA-AIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGT 233
+ + F A+G+ +VAL + H HK P + N
Sbjct: 137 SDHLRDVFGKAMGLTDQDIVAL-------SGGHTIGAAHKERSGFEGP----WTSN---- 181
Query: 234 PMVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLL 289
P++ DN+Y+ +L + +GL+ + D L +D RP V K A +D FF +++ A L
Sbjct: 182 PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 241
Query: 290 SE 291
SE
Sbjct: 242 SE 243
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 81/182 (44%), Gaps = 24/182 (13%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 93 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKG 148
Query: 175 MSVVLERFA-AIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGT 233
+ + F A+G+ +VAL + H HK P + N
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVAL-------SGGHTIGAAHKERSGFEGP----WTSN---- 193
Query: 234 PMVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLL 289
P++ DN+Y+ +L + +GL+ + D L +D RP V K A +D FF +++ A L
Sbjct: 194 PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 253
Query: 290 SE 291
SE
Sbjct: 254 SE 255
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 89/210 (42%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD++ V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 139 PDNGR-LPDYDKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPWGAAN- 195
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 196 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 81/182 (44%), Gaps = 24/182 (13%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 93 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKG 148
Query: 175 MSVVLERFA-AIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGT 233
+ + F A+G+ +VAL + H HK P + N
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVAL-------SGGHTIGAAHKERSGFEGP----WTSN---- 193
Query: 234 PMVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLL 289
P++ DN+Y+ +L + +GL+ + D L +D RP V K A +D FF +++ A L
Sbjct: 194 PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 253
Query: 290 SE 291
SE
Sbjct: 254 SE 255
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 81/182 (44%), Gaps = 24/182 (13%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 93 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKG 148
Query: 175 MSVVLERFA-AIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGT 233
+ + F A+G+ +VAL + H HK P + N
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVAL-------SGGHTIGAAHKERSGFEGP----WTSN---- 193
Query: 234 PMVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLL 289
P++ DN+Y+ +L + +GL+ + D L +D RP V K A +D FF +++ A L
Sbjct: 194 PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 253
Query: 290 SE 291
SE
Sbjct: 254 SE 255
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 81/182 (44%), Gaps = 24/182 (13%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 93 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKG 148
Query: 175 MSVVLERFA-AIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGT 233
+ + F A+G+ +VAL + H HK P + N
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVAL-------SGGHTIGAAHKERSGFEGP----WTSN---- 193
Query: 234 PMVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLL 289
P++ DN+Y+ +L + +GL+ + D L +D RP V K A +D FF +++ A L
Sbjct: 194 PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 253
Query: 290 SE 291
SE
Sbjct: 254 SE 255
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 81/182 (44%), Gaps = 24/182 (13%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++ E P ++S AD L+G V GGP +P GR D + E LPD
Sbjct: 81 EPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPE---GRLPDATKG 136
Query: 175 MSVVLERFA-AIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGT 233
+ + F A+G+ +VAL + H HK P + N
Sbjct: 137 SDHLRDVFGKAMGLTDQDIVAL-------SGGHTIGAAHKERSGFEGP----WTSN---- 181
Query: 234 PMVLDNNYYRNIL--DNKGLMMV--DHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLL 289
P++ DN+Y+ +L + +GL+ + D L +D RP V K A +D FF +++ A L
Sbjct: 182 PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 241
Query: 290 SE 291
SE
Sbjct: 242 SE 243
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPWGAAN- 192
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N YY N+L+ G MM+ D+ L D
Sbjct: 193 -------------NVFTNEYYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 239
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 240 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 23/201 (11%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P
Sbjct: 139 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPWG---- 192
Query: 222 KAVQYVRNDRGTPMVLDNNYY--RNILDNK------GLMMV--DHQLATDKRTRPYVKKM 271
A V + G +L+ ++ +N +N+ G MM+ D+ L D + VK+
Sbjct: 193 -AANNVFTNEGYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEY 251
Query: 272 AKSQDYFFKEFSRAITLLSEN 292
A QD FFK+FS+A L EN
Sbjct: 252 ANDQDKFFKDFSKAFEKLLEN 272
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPQGAAN- 197
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 198 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 244
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 245 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 139 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPGGAAN- 195
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 196 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPGGAAN- 197
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 198 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 244
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 245 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTT 140
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPWGCAN- 197
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 198 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 244
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 245 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAG-ALGKTHLKNSGYEGPWGAAN- 192
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 193 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 239
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 240 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 82 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 136
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 137 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAG-ALGKTHLKNSGYEGPWGAAN- 193
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 194 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 240
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 241 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 270
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 82 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 136
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 137 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAG-ALGKTHLKNSGYEGPWGAAN- 193
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 194 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 240
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 241 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 270
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPWGAAN- 197
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 198 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 244
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 245 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 87 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 141
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 142 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPWGAAN- 198
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 199 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 245
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 246 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 275
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPWGAAN- 192
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 193 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 239
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 240 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 139 PDNGR-LPDMDKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPWGAAN- 195
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 196 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 139 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPWGAAN- 195
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 196 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPWGAAN- 197
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 198 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 244
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 245 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 139 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPWGAAN- 195
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 196 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPWGAAN- 197
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 198 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 244
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 245 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPWGAAN- 197
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 198 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 244
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 245 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPWGAAN- 197
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 198 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 244
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 245 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPWGAAN- 195
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 196 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPWGAAN- 195
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 196 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPWGAAN- 195
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 196 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPWGAAN- 195
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 196 -------------NVFTNEFYLNLLNENWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 83 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 137
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 138 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPWGAAN- 194
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 195 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 241
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 242 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 271
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 141 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPWGAAN- 197
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 198 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 244
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 245 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPFGAAN- 197
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 198 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 244
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 245 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 91/196 (46%), Gaps = 13/196 (6%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCP-DAIPD 220
+ LPD + V F + ++ +VAL+ AL H+ + ++ P A +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPWGAANN 196
Query: 221 PKAVQYVRNDRGTPMVLDNNYYRN-ILDNK-GLMMV--DHQLATDKRTRPYVKKMAKSQD 276
++ N L+ N N D+K G MM+ D+ L D + VK+ A QD
Sbjct: 197 CFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQD 256
Query: 277 YFFKEFSRAITLLSEN 292
FFK+FS+A L EN
Sbjct: 257 KFFKDFSKAFEKLLEN 272
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 91/199 (45%), Gaps = 19/199 (9%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCP-----D 216
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPWGAANN 193
Query: 217 AIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNK-GLMMV--DHQLATDKRTRPYVKKMAK 273
+ K + + D + N+ D+K G MM+ D+ L D + VK+ A
Sbjct: 194 VFTNEKYLNLLNEDW---KLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYAN 250
Query: 274 SQDYFFKEFSRAITLLSEN 292
QD FFK+FS+A L EN
Sbjct: 251 DQDKFFKDFSKAFEKLLEN 269
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 87/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ ++ P +
Sbjct: 141 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKRSGYEGPWGAAN- 197
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 198 -------------NVFTNEFYLNLLNENWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 244
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 245 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 87/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ ++ P +
Sbjct: 136 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKRSGYEGPWGAAN- 192
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 193 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 239
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 240 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 87/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ ++ P +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKRSGYEGPWGAAN- 195
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 196 -------------NVFTNEFYLNLLNENWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 87/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ ++ P +
Sbjct: 141 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKRSGYEGPWGAAN- 197
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 198 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 244
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 245 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ L H+ + ++ P
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAH-TLGKTHLKNSGYEGP------ 190
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNIL----------------DNKGLMM---VDHQLATDK 262
+ N+ V DN++Y N+L D+K + D+ L D
Sbjct: 191 ----WTANNN----VFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYLQLPTDYSLIQDP 242
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 87/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEWQGPKIPWRCGRVDTPEDTT 140
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 141 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPWGAAN- 197
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 198 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 244
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 245 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 87/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 77 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 131
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ ++ P +
Sbjct: 132 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKRSGYEGPFGAAN- 188
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 189 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 235
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 236 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 265
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 87/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 83 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 137
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ ++ P +
Sbjct: 138 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKRSGYEGPFGAAN- 194
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 195 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 241
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 242 KYLSIVKEYANDQDRFFKDFSKAFEKLLEN 271
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 139 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPGGAAN- 195
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ ++ L D
Sbjct: 196 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTNYSLIQDP 242
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPQGAAN- 192
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 193 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 239
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L E+
Sbjct: 240 KYLSIVKEYANDQDKFFKDFSKAFEKLLED 269
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 139 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPGGAAN- 195
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 196 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L E+
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKLLED 272
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPGGAAN- 192
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 193 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 239
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L E+
Sbjct: 240 KYLSIVKEYANDQDKFFKDFSKAFEKLLED 269
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 82 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 136
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 137 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPGGAAN- 193
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 194 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 240
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L E+
Sbjct: 241 KYLSIVKEYANDQDKFFKDFSKAFEKLLED 270
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 87/210 (41%), Gaps = 43/210 (20%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 82 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 136
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++
Sbjct: 137 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEG------- 187
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
G V N +Y N+L+ G MM+ D+ L D
Sbjct: 188 ---------GGANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 238
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 239 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 268
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 87/210 (41%), Gaps = 43/210 (20%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEG------- 186
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
G V N +Y N+L+ G MM+ D+ L D
Sbjct: 187 ---------GGANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 237
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 238 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 267
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 87 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 141
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 142 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPWGAAN- 198
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ ++ L D
Sbjct: 199 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTEYSLIQDP 245
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 246 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 275
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 87/210 (41%), Gaps = 43/210 (20%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 87 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 141
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++
Sbjct: 142 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEG------- 192
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
G V N +Y N+L+ G MM+ D+ L D
Sbjct: 193 ---------GGANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 243
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 244 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 273
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 87/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL AL H+ + ++ P +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALKGAH-ALGKTHLKNSGYEGPWGAAN- 192
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 193 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 239
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 240 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPWGAAN- 197
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ ++ L D
Sbjct: 198 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTNYSLIQDP 244
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 245 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 86 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 140
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 141 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPWGAAN- 197
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G +M+ D+ L D
Sbjct: 198 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYIMLPTDYSLIQDP 244
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 245 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPWGAAN- 192
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 193 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 239
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L E+
Sbjct: 240 KYLSIVKEYANDQDKFFKDFSKAFEKLLED 269
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPWGAAN- 192
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 193 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 239
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L E+
Sbjct: 240 KYLSIVKEYANDQDKFFKDFSKAFEKLLED 269
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 87/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPWGAAN- 192
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNIL----------------DNKGLMM---VDHQLATDK 262
V N +Y N+L D+K M D+ L D
Sbjct: 193 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMHLPTDYSLIQDP 239
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 240 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPWGAAN- 195
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 196 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L E+
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKLLED 272
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPYGAAN- 192
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 193 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 239
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L E+
Sbjct: 240 KYLSIVKEYANDQDKFFKDFSKAFEKLLED 269
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 89/210 (42%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL L H+ + ++ P
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALSGAH-TLGKTHLKNSGYEGP------ 190
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNIL----------------DNKGLMM---VDHQLATDK 262
+ N+ V DN++Y N+L D+K + D+ L D
Sbjct: 191 ----WTANNN----VFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYLQLPTDYSLIQDP 242
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 87/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 87 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 141
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ + ++ P +
Sbjct: 142 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKNSGYEGPWGAAN- 198
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ + L D
Sbjct: 199 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTAYSLIQDP 245
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 246 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 275
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 87/210 (41%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 81 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 135
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL + + ++ P +
Sbjct: 136 PDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAH-ALGKTELKNSGYEGPWGAAN- 192
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ D+ L D
Sbjct: 193 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 239
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 240 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 41/210 (19%)
Query: 103 GMRN-FRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA 161
G++N F+++E + +E P +S D+ L G V + GP IP + GR D +
Sbjct: 84 GLQNGFKFLE----PIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTT 138
Query: 162 EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDP 221
+ LPD + V F + ++ +VAL+ AL H+ ++ P +
Sbjct: 139 PDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAH-ALGKTHLKRSGYEGPWGAAN- 195
Query: 222 KAVQYVRNDRGTPMVLDNNYYRNILDN-----------------KGLMMV--DHQLATDK 262
V N +Y N+L+ G MM+ + L D
Sbjct: 196 -------------NVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTXYSLIQDP 242
Query: 263 RTRPYVKKMAKSQDYFFKEFSRAITLLSEN 292
+ VK+ A QD FFK+FS+A L EN
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 80/197 (40%), Gaps = 36/197 (18%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++++ P +S AD+ VL+ + +GGP IP GR D + + LPD + +
Sbjct: 77 ETLKKKYP-QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKT 135
Query: 175 MSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTP 234
S V E F +G + VAL+ H+ + P + + G
Sbjct: 136 QSHVREVFRRLGFNDQETVALIGAH-TCGETHIEFSGYHGP----------WTHDKNG-- 182
Query: 235 MVLDNNYYRNILD------------------NKGLMMV--DHQLATDKRTRPYVKKMAKS 274
DN+++ +LD LMM+ D L D R YV+ AK
Sbjct: 183 --FDNSFFTQLLDEDWVLNPKVEQMQLMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKD 240
Query: 275 QDYFFKEFSRAITLLSE 291
D F K+F+ A L+E
Sbjct: 241 NDRFNKDFANAFKKLTE 257
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 79/195 (40%), Gaps = 32/195 (16%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++++ P +S AD+ VL+ + +GGP IP GR D + + LPD + +
Sbjct: 77 ETLKKKYP-QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKT 135
Query: 175 MSVVLERFAAIGIDAPGLVALL------EVDPALNPDHVPHMLHKC------------PD 216
S V E F +G + VAL+ E + H P K D
Sbjct: 136 QSHVREVFRRLGFNDQETVALIGAHTCGECHIEFSGYHGPWTHDKNGFDNSFFTQLLDED 195
Query: 217 AIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQD 276
+ +PK Q DR T ++ ++ D L D R YV+ AK D
Sbjct: 196 WVLNPKVEQMQLMDRATTKLM-------------MLPSDVCLLLDPSYRKYVELYAKDND 242
Query: 277 YFFKEFSRAITLLSE 291
F K+F+ A L+E
Sbjct: 243 RFNKDFANAFKKLTE 257
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 79/195 (40%), Gaps = 32/195 (16%)
Query: 115 EAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDS 174
E ++++ P +S AD+ VL+ + +GGP IP GR D + + LPD + +
Sbjct: 76 ETLKKKYP-QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKT 134
Query: 175 MSVVLERFAAIGIDAPGLVALL------EVDPALNPDHVPHMLHKC------------PD 216
S V E F +G + VAL+ E + H P K D
Sbjct: 135 QSHVREVFRRLGFNDQETVALIGAHTCGECHIEFSGYHGPWTHDKNGFDNSFFTQLLDED 194
Query: 217 AIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQD 276
+ +PK Q DR T ++ ++ D L D R YV+ AK D
Sbjct: 195 WVLNPKVEQMQLMDRATTKLM-------------MLPSDVCLLLDPSYRKYVELYAKDND 241
Query: 277 YFFKEFSRAITLLSE 291
F K+F+ A L+E
Sbjct: 242 RFNKDFANAFKKLTE 256
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 29/184 (15%)
Query: 125 VSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLER--F 182
V+ AD+ L+ + GGP IP+K GR D + E LPD R F
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDVF 146
Query: 183 AAIGIDAPGLVALLEVDPALNPDHVPHMLHKC-PD--AIPDPKAVQYVRNDRGTP----- 234
+G++ +VAL H L + PD P+ +Y ++ G P
Sbjct: 147 YRMGLNDKEIVALSGA----------HTLGRSRPDRSGWGKPE-TKYTKDGPGAPGGQSW 195
Query: 235 ----MVLDNNYYRNILDNKG----LMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAI 286
+ DN+Y+++I + + ++ D L D + Y +K A + FFK+++ A
Sbjct: 196 TAQWLKFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEKYAADPEAFFKDYAEAH 255
Query: 287 TLLS 290
LS
Sbjct: 256 AKLS 259
>pdb|1U2K|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase- Peroxidase Katg Of Escherichia Coli (I41)
pdb|1U2L|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P1)
pdb|1U2L|B Chain B, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P1)
Length = 309
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 113 IKEAVERECPGVVSCADILVLSGRDGV-----VALGGPYIPLKTGRRDGRKSRAEI 163
+ E +++E G S ADI+VL+G GV A ++P GR D R+ + +I
Sbjct: 95 VLEKIQKES-GKASLADIIVLAGVVGVEKAASAAGLSIHVPFAPGRVDARQDQTDI 149
>pdb|1U2J|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|B Chain B, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|C Chain C, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|D Chain D, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|E Chain E, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|F Chain F, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|G Chain G, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|H Chain H, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
Length = 326
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 113 IKEAVERECPGVVSCADILVLSGRDGV-----VALGGPYIPLKTGRRDGRKSRAEI 163
+ E +++E G S ADI+VL+G GV A ++P GR D R+ + +I
Sbjct: 112 VLEKIQKES-GKASLADIIVLAGVVGVEKAASAAGLSIHVPFAPGRVDARQDQTDI 166
>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant
pdb|3REZ|B Chain B, Glycoprotein Gpib Variant
pdb|3REZ|C Chain C, Glycoprotein Gpib Variant
pdb|3REZ|D Chain D, Glycoprotein Gpib Variant
Length = 129
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 121 CPGVVSCADILVLSGRDGVVALGGPYIPLKT 151
CP SCA LV GR G+ AL P +P +T
Sbjct: 4 CPAPCSCAGTLVDCGRRGLTAL--PALPART 32
>pdb|2RGY|A Chain A, Crystal Structure Of Transcriptional Regulator Of Laci
Family From Burkhoderia Phymatum
Length = 290
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 15/89 (16%)
Query: 135 GRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPD-----HNDSMSV-VLERFAAIGID 188
R G+ P I G + ++LE P ND+ +V L RF +GI
Sbjct: 155 ARHGIARDSVPLIESDFSPEGGYAATCQLLESKAPFTGLFCANDTXAVSALARFQQLGIS 214
Query: 189 APGLVALLEVD---------PALNPDHVP 208
PG V+++ D PAL H+P
Sbjct: 215 VPGDVSVIGYDDDYSAAYAAPALTSVHIP 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,914,003
Number of Sequences: 62578
Number of extensions: 368287
Number of successful extensions: 1010
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 824
Number of HSP's gapped (non-prelim): 109
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)