Query 021207
Match_columns 316
No_of_seqs 187 out of 1460
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 08:27:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021207.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021207hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 4.1E-96 9E-101 697.3 22.9 274 30-310 22-324 (324)
2 cd00693 secretory_peroxidase H 100.0 1.7E-90 3.6E-95 656.6 22.9 274 32-309 1-298 (298)
3 PLN02608 L-ascorbate peroxidas 100.0 4.1E-66 8.8E-71 485.5 20.9 231 47-307 15-257 (289)
4 cd00691 ascorbate_peroxidase A 100.0 1.3E-63 2.8E-68 463.2 19.0 229 44-295 11-251 (253)
5 PF00141 peroxidase: Peroxidas 100.0 5.8E-64 1.3E-68 460.2 10.1 210 49-274 1-230 (230)
6 cd00692 ligninase Ligninase an 100.0 5.1E-62 1.1E-66 465.2 20.8 238 45-312 16-289 (328)
7 PLN02364 L-ascorbate peroxidas 100.0 1.5E-61 3.3E-66 448.1 21.0 230 36-295 4-248 (250)
8 PLN02879 L-ascorbate peroxidas 100.0 6E-60 1.3E-64 436.9 20.8 219 47-295 18-248 (251)
9 cd00314 plant_peroxidase_like 100.0 2.7E-56 5.8E-61 414.6 16.4 223 48-291 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 5.2E-49 1.1E-53 381.8 17.6 242 47-300 45-401 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 1.4E-47 3.1E-52 392.7 18.3 243 47-300 55-408 (716)
12 cd08201 plant_peroxidase_like_ 100.0 8.4E-46 1.8E-50 342.7 14.0 206 56-291 34-264 (264)
13 PRK15061 catalase/hydroperoxid 100.0 1E-43 2.2E-48 362.6 18.0 242 47-300 57-414 (726)
14 cd08200 catalase_peroxidase_2 100.0 3.8E-39 8.1E-44 301.9 17.0 221 51-293 17-296 (297)
15 PRK15061 catalase/hydroperoxid 100.0 6.9E-34 1.5E-38 290.7 18.3 220 51-293 442-721 (726)
16 TIGR00198 cat_per_HPI catalase 100.0 5.8E-34 1.3E-38 292.6 16.9 221 48-294 429-710 (716)
17 COG0376 KatG Catalase (peroxid 100.0 2.9E-28 6.3E-33 239.8 14.9 237 47-293 70-416 (730)
18 COG0376 KatG Catalase (peroxid 99.6 6E-15 1.3E-19 146.4 13.7 216 51-293 452-725 (730)
19 PF07172 GRP: Glycine rich pro 69.6 4.2 9.2E-05 32.6 2.6 23 1-23 1-23 (95)
20 PTZ00411 transaldolase-like pr 61.8 21 0.00045 35.0 6.2 147 125-282 161-326 (333)
21 PF11895 DUF3415: Domain of un 48.1 15 0.00033 28.6 2.3 19 277-295 2-20 (80)
22 PHA03163 hypothetical protein; 40.4 40 0.00087 26.8 3.5 39 4-43 8-46 (92)
23 KOG4065 Uncharacterized conser 31.5 1.5E+02 0.0033 25.0 5.8 86 11-117 7-97 (144)
24 TIGR00874 talAB transaldolase. 29.2 2.3E+02 0.0051 27.6 7.6 144 125-280 149-311 (317)
25 PF15240 Pro-rich: Proline-ric 26.6 48 0.001 29.7 2.2 15 8-23 2-16 (179)
26 PRK05269 transaldolase B; Prov 26.5 2E+02 0.0043 28.0 6.6 88 125-212 151-254 (318)
27 COG3763 Uncharacterized protei 26.1 2.9E+02 0.0064 21.0 6.0 30 47-76 23-52 (71)
28 cd00957 Transaldolase_TalAB Tr 23.2 1.5E+02 0.0032 28.9 5.0 86 125-212 149-252 (313)
29 PLN02161 beta-amylase 22.2 1.3E+02 0.0029 31.3 4.6 36 267-306 234-274 (531)
30 KOG3803 Transcription factor c 22.2 47 0.001 35.4 1.4 35 41-88 671-705 (968)
31 PF09349 OHCU_decarbox: OHCU d 20.8 47 0.001 28.8 1.0 36 170-205 31-68 (159)
32 COG5014 Predicted Fe-S oxidore 20.8 93 0.002 28.2 2.8 67 173-249 78-144 (228)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=4.1e-96 Score=697.25 Aligned_cols=274 Identities=39% Similarity=0.653 Sum_probs=258.5
Q ss_pred CCCCCCCccccCCccHHHHHHHHHHHHHHhCcCchhhHHHHHhccccccCCCCccccccccCCcccccccCCCCcchHHH
Q 021207 30 DPGLVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRY 109 (316)
Q Consensus 30 ~~~L~~~fY~~sCP~~e~iVr~~v~~~~~~~~~~a~~llRL~FHDcfv~GcDgSill~~t~~~~~E~~~~~N~gL~g~~~ 109 (316)
.++|+++||++|||++|+||+++|++.+.++|+++|++|||+||||||+||||||||+++ ..||++++|.+|+||++
T Consensus 22 ~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~---~~Ek~a~~N~~l~Gf~~ 98 (324)
T PLN03030 22 GQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGS---NTEKTALPNLLLRGYDV 98 (324)
T ss_pred hccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCC---cccccCCCCcCcchHHH
Confidence 467999999999999999999999999999999999999999999999999999999865 36999999999999999
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHhhhHHHHhhCCCCccccCCCCCCCCCchhhhhccCCCCCCCHHHHHHHHHHcCCCc
Q 021207 110 IENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDA 189 (316)
Q Consensus 110 Id~iK~~le~~cp~~VScADiialAardav~~~GGP~~~v~~GR~D~~~s~~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~ 189 (316)
||.||+++|+.||++|||||||||||||||+++|||.|+|++||||+++|.+.++. +||.|+.++++|++.|+++||+.
T Consensus 99 i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~l~~~F~~~Gl~~ 177 (324)
T PLN03030 99 IDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDVQKQKFAAKGLNT 177 (324)
T ss_pred HHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-CCcCCCCCHHHHHHHHHHcCCCH
Confidence 99999999999999999999999999999999999999999999999999877664 89999999999999999999999
Q ss_pred ccceeeecc-------------------------CCCCCcchhhhhhccCCCCCCCCCCCccccCCCCCCCccChHHHHH
Q 021207 190 PGLVALLEV-------------------------DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRN 244 (316)
Q Consensus 190 ~dlVaLsg~-------------------------~pti~~~~~~~l~~~Cp~~~~~~~~~~~~~~D~~tp~~FDN~Yy~~ 244 (316)
+|||+|||+ ||+||+.|+..|++.||. .++..+ .+++|+.||.+|||+||++
T Consensus 178 ~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~-~~~~~~--~~~lD~~Tp~~FDn~Yy~n 254 (324)
T PLN03030 178 QDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQ-NGDGSR--RIALDTGSSNRFDASFFSN 254 (324)
T ss_pred HHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCC-CCCCCc--cccCCCCCCcccccHHHHH
Confidence 999999943 678999999999999996 222233 5789999999999999999
Q ss_pred HhhcCCCcccccccccCcCcHHHHHHHhhcH----HHHHHHHHHHHHHhhhCCCCCCCCCcccccccccc
Q 021207 245 ILDNKGLMMVDHQLATDKRTRPYVKKMAKSQ----DYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 310 (316)
Q Consensus 245 l~~~~gll~SD~~L~~d~~t~~~V~~yA~d~----~~F~~~F~~Am~Km~~l~v~tg~~GeiR~~C~~~n 310 (316)
|+.++|+|+|||.|++|++|+++|++||.|+ +.|+++|++||+|||+|+|+||.+||||++|+++|
T Consensus 255 ll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 255 LKNGRGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred HHhcCCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence 9999999999999999999999999999875 59999999999999999999999999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.7e-90 Score=656.57 Aligned_cols=274 Identities=44% Similarity=0.726 Sum_probs=261.1
Q ss_pred CCCCCccccCCccHHHHHHHHHHHHHHhCcCchhhHHHHHhccccccCCCCccccccccCCcccccccCCCCcchHHHHH
Q 021207 32 GLVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRYIE 111 (316)
Q Consensus 32 ~L~~~fY~~sCP~~e~iVr~~v~~~~~~~~~~a~~llRL~FHDcfv~GcDgSill~~t~~~~~E~~~~~N~gL~g~~~Id 111 (316)
||+++||++|||++|+||+++|++.+.++++++|++|||+||||||+||||||||++++++.+|+++++|.||+||++|+
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~~l~g~~~i~ 80 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNLSLRGFDVID 80 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCCCcchhHHHH
Confidence 59999999999999999999999999999999999999999999999999999999987778999999999999999999
Q ss_pred HHHHHHHhhCCCCccHHHHHHHhhhHHHHhhCCCCccccCCCCCCCCCchhhhhccCCCCCCCHHHHHHHHHHcCCCccc
Q 021207 112 NIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPG 191 (316)
Q Consensus 112 ~iK~~le~~cp~~VScADiialAardav~~~GGP~~~v~~GR~D~~~s~~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~~d 191 (316)
+||+++|+.||++||||||||||||+||+++|||.|+|++||+|++++.+..+ ++||.|+.+++++++.|+++||+++|
T Consensus 81 ~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~G~~~~d 159 (298)
T cd00693 81 DIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDV-GNLPSPFFSVSQLISLFASKGLTVTD 159 (298)
T ss_pred HHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccc-cCCCCcccCHHHHHHHHHHcCCCHHH
Confidence 99999999999999999999999999999999999999999999998877655 78999999999999999999999999
Q ss_pred ceeeecc------------------------CCCCCcchhhhhhccCCCCCCCCCCCccccCCCCCCCccChHHHHHHhh
Q 021207 192 LVALLEV------------------------DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILD 247 (316)
Q Consensus 192 lVaLsg~------------------------~pti~~~~~~~l~~~Cp~~~~~~~~~~~~~~D~~tp~~FDN~Yy~~l~~ 247 (316)
||+|+|+ ||+|++.|+..|++.||. ..++.. .+++|+.||.+|||+||++|+.
T Consensus 160 ~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~-~~~~~~--~~~lD~~Tp~~FDn~Yy~~l~~ 236 (298)
T cd00693 160 LVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPA-GGDDDT--LVPLDPGTPNTFDNSYYKNLLA 236 (298)
T ss_pred heeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCC-CCCCCc--cccCCCCCCCccccHHHHHHHh
Confidence 9999954 577999999999999997 333344 6899999999999999999999
Q ss_pred cCCCcccccccccCcCcHHHHHHHhhcHHHHHHHHHHHHHHhhhCCCCCCCCCccccccccc
Q 021207 248 NKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLA 309 (316)
Q Consensus 248 ~~gll~SD~~L~~d~~t~~~V~~yA~d~~~F~~~F~~Am~Km~~l~v~tg~~GeiR~~C~~~ 309 (316)
++|+|+||+.|+.|++|+++|++||.||+.|+++|++||+||++++|+||.+||||++|+.+
T Consensus 237 ~~glL~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 237 GRGLLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred cccCccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999975
No 3
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=4.1e-66 Score=485.53 Aligned_cols=231 Identities=26% Similarity=0.363 Sum_probs=207.0
Q ss_pred HHHHHHHHHHHHhCcCchhhHHHHHhcccc-------ccCCCCccccccccCCcccccccCCCCc-chHHHHHHHHHHHH
Q 021207 47 DIIREQVKLLYKRHKNTAFSWLRNIFHDCA-------VQSCDASLLLDSTRKTLSEKEMDRSFGM-RNFRYIENIKEAVE 118 (316)
Q Consensus 47 ~iVr~~v~~~~~~~~~~a~~llRL~FHDcf-------v~GcDgSill~~t~~~~~E~~~~~N~gL-~g~~~Id~iK~~le 118 (316)
+.+++++ ..+.++|.++|.+|||+||||| ++||||||++. +|+++++|.|| +||++|++||+++
T Consensus 15 ~~~~~~~-~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~------~E~~~~~N~gL~~g~~vid~iK~~~- 86 (289)
T PLN02608 15 EKARRDL-RALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE------EEYSHGANNGLKIAIDLCEPVKAKH- 86 (289)
T ss_pred HHHHHHH-HHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc------cccCCccccchHHHHHHHHHHHHHc-
Confidence 4455666 4477899999999999999999 89999999983 69999999999 6999999999997
Q ss_pred hhCCCCccHHHHHHHhhhHHHHhhCCCCccccCCCCCCCCCchhhhhccCCCCCCCHHHHHHHHHHcCCCcccceeeecc
Q 021207 119 RECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEV 198 (316)
Q Consensus 119 ~~cp~~VScADiialAardav~~~GGP~~~v~~GR~D~~~s~~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsg~ 198 (316)
| +|||||||+||||+||+.+|||.|+|++||+|++++.+ +++||+|+.+++++++.|+++||+++|||+|+|+
T Consensus 87 ---~-~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGA 159 (289)
T PLN02608 87 ---P-KITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPE---EGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSGG 159 (289)
T ss_pred ---C-CcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCc---cCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhccc
Confidence 4 79999999999999999999999999999999999863 4689999999999999999999999999999999
Q ss_pred CCCCCcchhhhhhccCCCCCCCCCCCccccCCCCCCCccChHHHHHHhhc--CCC--cccccccccCcCcHHHHHHHhhc
Q 021207 199 DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--KGL--MMVDHQLATDKRTRPYVKKMAKS 274 (316)
Q Consensus 199 ~pti~~~~~~~l~~~Cp~~~~~~~~~~~~~~D~~tp~~FDN~Yy~~l~~~--~gl--l~SD~~L~~d~~t~~~V~~yA~d 274 (316)
| |++. .+|.. . +..+ +++ .||.+|||+||++|+.+ +|+ |+||++|+.|++|+++|+.||.|
T Consensus 160 H-TiG~-------ahc~r-~-g~~g----~~~-~Tp~~FDN~Yy~~ll~~~~~gll~L~SD~~L~~d~~T~~~V~~fA~~ 224 (289)
T PLN02608 160 H-TLGR-------AHPER-S-GFDG----PWT-KEPLKFDNSYFVELLKGESEGLLKLPTDKALLEDPEFRPYVELYAKD 224 (289)
T ss_pred c-cccc-------ccccC-C-CCCC----CCC-CCCCccChHHHHHHHcCCcCCccccccCHhhhcChhHHHHHHHHhhC
Confidence 9 8874 34643 1 1111 343 79999999999999998 788 79999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCCCCCccccccc
Q 021207 275 QDYFFKEFSRAITLLSENNPLTGTKGEIRKVCN 307 (316)
Q Consensus 275 ~~~F~~~F~~Am~Km~~l~v~tg~~GeiR~~C~ 307 (316)
|+.|+++|++||+||++|+|+||++||+.+.-+
T Consensus 225 ~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~~ 257 (289)
T PLN02608 225 EDAFFRDYAESHKKLSELGFTPPSSAFKKKSTS 257 (289)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCcccccCc
Confidence 999999999999999999999999999988654
No 4
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=1.3e-63 Score=463.17 Aligned_cols=229 Identities=27% Similarity=0.397 Sum_probs=205.1
Q ss_pred cHHHHHHHHHHHHHHhCcCchhhHHHHHhccccccCCCCcccccc---ccCCcccccccCCCCc-chHHHHHHHHHHHHh
Q 021207 44 QAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDS---TRKTLSEKEMDRSFGM-RNFRYIENIKEAVER 119 (316)
Q Consensus 44 ~~e~iVr~~v~~~~~~~~~~a~~llRL~FHDcfv~GcDgSill~~---t~~~~~E~~~~~N~gL-~g~~~Id~iK~~le~ 119 (316)
..++||+++|++.+. +++++|++|||+|||||+ ||+|+++++ +..+.+|+++++|.|| +||++|++||+++
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~--~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~-- 85 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSGT--YDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKY-- 85 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhc--cccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHc--
Confidence 457899999999999 999999999999999994 777777643 3334579999999999 8999999999986
Q ss_pred hCCCCccHHHHHHHhhhHHHHhhCCCCccccCCCCCCCCCchhhhhccCCCCCCCHHHHHHHHHHcCCCcccceeeeccC
Q 021207 120 ECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVD 199 (316)
Q Consensus 120 ~cp~~VScADiialAardav~~~GGP~~~v~~GR~D~~~s~~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsg~~ 199 (316)
| +||||||||||||+||+.+|||.|+|++||+|++++....++++||.|+.+++++++.|+++||+++|||+|+|+|
T Consensus 86 --~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGaH 162 (253)
T cd00691 86 --P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGAH 162 (253)
T ss_pred --C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhcccc
Confidence 5 7999999999999999999999999999999999998777778999999999999999999999999999999999
Q ss_pred CCCCcchhhhhhccCCCCCCCCCCCccccCCCCCCCccChHHHHHHhhcCC--------CcccccccccCcCcHHHHHHH
Q 021207 200 PALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKG--------LMMVDHQLATDKRTRPYVKKM 271 (316)
Q Consensus 200 pti~~~~~~~l~~~Cp~~~~~~~~~~~~~~D~~tp~~FDN~Yy~~l~~~~g--------ll~SD~~L~~d~~t~~~V~~y 271 (316)
||+. .+|.. .+..+ ++ ..||.+|||+||++|+.++| +|+||+.|+.|++|+++|+.|
T Consensus 163 -TiG~-------a~c~~--~~~~g----~~-~~tp~~FDn~Yy~~ll~~~g~~~~~~~~~L~sD~~L~~d~~t~~~v~~~ 227 (253)
T cd00691 163 -TLGR-------CHKER--SGYDG----PW-TKNPLKFDNSYFKELLEEDWKLPTPGLLMLPTDKALLEDPKFRPYVELY 227 (253)
T ss_pred -eeec-------ccccC--CCCCC----CC-CCCCCcccHHHHHHHhcCCCccCcCcceechhhHHHHcCccHHHHHHHH
Confidence 7863 34532 11111 22 37999999999999999999 999999999999999999999
Q ss_pred hhcHHHHHHHHHHHHHHhhhCCCC
Q 021207 272 AKSQDYFFKEFSRAITLLSENNPL 295 (316)
Q Consensus 272 A~d~~~F~~~F~~Am~Km~~l~v~ 295 (316)
|.|+++|+++|++||+||++++|.
T Consensus 228 a~~~~~F~~~Fa~Am~Km~~l~v~ 251 (253)
T cd00691 228 AKDQDAFFKDYAEAHKKLSELGVP 251 (253)
T ss_pred hhCHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999986
No 5
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=5.8e-64 Score=460.23 Aligned_cols=210 Identities=41% Similarity=0.682 Sum_probs=188.2
Q ss_pred HHHHHHHHHHhCcCchhhHHHHHhccccc-cCCCCccccccccCCcccccccCCCCcc-hHHHHHHHHHHHHhhCCCCcc
Q 021207 49 IREQVKLLYKRHKNTAFSWLRNIFHDCAV-QSCDASLLLDSTRKTLSEKEMDRSFGMR-NFRYIENIKEAVERECPGVVS 126 (316)
Q Consensus 49 Vr~~v~~~~~~~~~~a~~llRL~FHDcfv-~GcDgSill~~t~~~~~E~~~~~N~gL~-g~~~Id~iK~~le~~cp~~VS 126 (316)
||++|++++.++++++|++|||+|||||+ +|||||||+. ..|+++++|.||+ ++++|++||+++|++||++||
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~-----~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~VS 75 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLF-----SAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVVS 75 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGS-----TTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS-
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceecc-----ccccccccccCcceeeechhhHHhhhcccccCCCC
Confidence 89999999999999999999999999999 9999999983 4799999999997 999999999999999999999
Q ss_pred HHHHHHHhhhHHHHhhCCCCccccCCCCCCCCCchhhhhccCCCCCCCHHHHHHHHHHcCCCcccceeeeccC-------
Q 021207 127 CADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEVD------- 199 (316)
Q Consensus 127 cADiialAardav~~~GGP~~~v~~GR~D~~~s~~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsg~~------- 199 (316)
|||||+||||+||+.+|||.|+|++||+|++++.+.++ .+||.|+.++++|++.|+++|||++|||||+|+|
T Consensus 76 ~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c 154 (230)
T PF00141_consen 76 CADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGA-SNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHC 154 (230)
T ss_dssp HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHH-HHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESG
T ss_pred HHHHHHHHhhhccccccccccccccccccccccccccc-ccccccccccchhhhhhhccccchhhhcceeccccccccee
Confidence 99999999999999999999999999999999999877 7899999999999999999999999999999764
Q ss_pred -----------CCCCcchhhhhhccCCCCCCCCCCCccccCCCCCCCccChHHHHHHhhcCCCcccccccccCcCcHHHH
Q 021207 200 -----------PALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYV 268 (316)
Q Consensus 200 -----------pti~~~~~~~l~~~Cp~~~~~~~~~~~~~~D~~tp~~FDN~Yy~~l~~~~gll~SD~~L~~d~~t~~~V 268 (316)
|+|++.|+.. .|+. +. .. .+++| ||.+|||+||++|++++|+|+||++|+.|++|+++|
T Consensus 155 ~~f~rl~~~~dp~~d~~~~~~---~C~~-~~--~~--~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~~t~~~V 224 (230)
T PF00141_consen 155 SSFSRLYFPPDPTMDPGYAGQ---NCNS-GG--DN--GVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDPETRPIV 224 (230)
T ss_dssp GCTGGTSCSSGTTSTHHHHHH---SSST-SG--CT--CEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHSTTHHHHH
T ss_pred cccccccccccccccccccee---ccCC-Cc--cc--ccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCHHHHHHH
Confidence 4566666655 7833 22 22 56888 999999999999999999999999999999999999
Q ss_pred HHHhhc
Q 021207 269 KKMAKS 274 (316)
Q Consensus 269 ~~yA~d 274 (316)
++||+|
T Consensus 225 ~~yA~d 230 (230)
T PF00141_consen 225 ERYAQD 230 (230)
T ss_dssp HHHHHT
T ss_pred HHHhcC
Confidence 999986
No 6
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=5.1e-62 Score=465.18 Aligned_cols=238 Identities=24% Similarity=0.298 Sum_probs=209.3
Q ss_pred HHHHHHHHHHHHHHhCc---CchhhHHHHHhccccc------------cCCCCccccccccCCcccccccCCCCcchHHH
Q 021207 45 AEDIIREQVKLLYKRHK---NTAFSWLRNIFHDCAV------------QSCDASLLLDSTRKTLSEKEMDRSFGMRNFRY 109 (316)
Q Consensus 45 ~e~iVr~~v~~~~~~~~---~~a~~llRL~FHDcfv------------~GcDgSill~~t~~~~~E~~~~~N~gL~g~~~ 109 (316)
+|..|+++|++.+..+. ..++.+|||+||||++ +||||||||+.+ .|+++++|.||+ ++
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~----~E~~~~~N~gL~--~v 89 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD----IETAFHANIGLD--EI 89 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc----ccccCCCCCCHH--HH
Confidence 48899999999998554 4667799999999996 799999999753 699999999998 99
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHhhhHHHHhh-CCCCccccCCCCCCCCCchhhhhccCCCCCCCHHHHHHHHHHcCCC
Q 021207 110 IENIKEAVERECPGVVSCADILVLSGRDGVVAL-GGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGID 188 (316)
Q Consensus 110 Id~iK~~le~~cp~~VScADiialAardav~~~-GGP~~~v~~GR~D~~~s~~~~~~~~LP~p~~~~~~l~~~F~~~Gl~ 188 (316)
|+.||..+|+.| |||||||+||||+||+.+ |||.|+|++||+|++++.+ +++||.|+.++++|++.|+++||+
T Consensus 90 vd~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~---~g~LP~p~~sv~~l~~~F~~~Gf~ 163 (328)
T cd00692 90 VEALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAP---DGLVPEPFDSVDKILARFADAGFS 163 (328)
T ss_pred HHHHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCc---ccCCCCCCCCHHHHHHHHHHcCCC
Confidence 999999999998 999999999999999965 9999999999999999864 468999999999999999999999
Q ss_pred cccceeeeccCCCCCcchhhhhhccCCCCCCCCCCCccccCCCCCCCccChHHHHHHh-hcCC-----------------
Q 021207 189 APGLVALLEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNIL-DNKG----------------- 250 (316)
Q Consensus 189 ~~dlVaLsg~~pti~~~~~~~l~~~Cp~~~~~~~~~~~~~~D~~tp~~FDN~Yy~~l~-~~~g----------------- 250 (316)
.+|||+|+|+| ||+... ...| ++..++|| .||.+|||+||+|++ .+++
T Consensus 164 ~~E~VaLsGAH-TiG~a~-----~~Dp-------s~~g~p~D-~TP~~FDn~Yf~~ll~~~~~~~g~~~~~~e~~~~~~g 229 (328)
T cd00692 164 PDELVALLAAH-SVAAQD-----FVDP-------SIAGTPFD-STPGVFDTQFFIETLLKGTAFPGSGGNQGEVESPLPG 229 (328)
T ss_pred HHHHhhhcccc-cccccC-----CCCC-------CCCCCCCC-CCcchhcHHHHHHHHHcCCCCCCccccccccccCccc
Confidence 99999999999 775322 1111 11135898 699999999999987 4555
Q ss_pred --CcccccccccCcCcHHHHHHHhhcHHHHHHHHHHHHHHhhhCCCCCCCCCccccccccccCC
Q 021207 251 --LMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLANKL 312 (316)
Q Consensus 251 --ll~SD~~L~~d~~t~~~V~~yA~d~~~F~~~F~~Am~Km~~l~v~tg~~GeiR~~C~~~n~~ 312 (316)
+|+||++|+.|++|+++|++||+||++|+++|++||+||++|||. +..+.+|+.+++.
T Consensus 230 ~~~L~SD~~L~~D~~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~----~~~l~dcs~v~p~ 289 (328)
T cd00692 230 EFRLQSDFLLARDPRTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQD----NISLTDCSDVIPP 289 (328)
T ss_pred cccccchHHHhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCC----cchhccCcccCCC
Confidence 499999999999999999999999999999999999999999987 3478899999964
No 7
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=1.5e-61 Score=448.06 Aligned_cols=230 Identities=27% Similarity=0.425 Sum_probs=204.4
Q ss_pred CccccC--CccHHHHHHHHHHHHHHhCcCchhhHHHHHhc-----ccccc--CCCCccccccccCCcccccccCCCCc-c
Q 021207 36 NFYKDT--CPQAEDIIREQVKLLYKRHKNTAFSWLRNIFH-----DCAVQ--SCDASLLLDSTRKTLSEKEMDRSFGM-R 105 (316)
Q Consensus 36 ~fY~~s--CP~~e~iVr~~v~~~~~~~~~~a~~llRL~FH-----Dcfv~--GcDgSill~~t~~~~~E~~~~~N~gL-~ 105 (316)
+||... |+.++..+++.+++.+ .+++++|.+|||+|| ||+++ ||||||.+ .+|+++++|.|| +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~------~~E~~~~~N~gl~~ 76 (250)
T PLN02364 4 NYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRF------DAEQAHGANSGIHI 76 (250)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCccccc------cccccCCCccCHHH
Confidence 466533 8889999999999988 789999999999999 88876 99999954 469999999999 8
Q ss_pred hHHHHHHHHHHHHhhCCCCccHHHHHHHhhhHHHHhhCCCCccccCCCCCCCCCchhhhhccCCCCCCCHHHHHHHHHH-
Q 021207 106 NFRYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAA- 184 (316)
Q Consensus 106 g~~~Id~iK~~le~~cp~~VScADiialAardav~~~GGP~~~v~~GR~D~~~s~~~~~~~~LP~p~~~~~~l~~~F~~- 184 (316)
||++|+.||+++ ++|||||||+||||+||+++|||.|+|++||+|++++.+ +++||.|+.++++|++.|++
T Consensus 77 ~~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~lP~p~~~~~~l~~~F~~~ 148 (250)
T PLN02364 77 ALRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPP---EGRLPDATKGCDHLRDVFAKQ 148 (250)
T ss_pred HHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccc---cCCCCCCCcCHHHHHHHHHHh
Confidence 999999999998 489999999999999999999999999999999999865 46899999999999999997
Q ss_pred cCCCcccceeeeccCCCCCcchhhhhhccCCCCCCCCCCCccccCCCCCCCccChHHHHHHhhc--CCCcc--ccccccc
Q 021207 185 IGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--KGLMM--VDHQLAT 260 (316)
Q Consensus 185 ~Gl~~~dlVaLsg~~pti~~~~~~~l~~~Cp~~~~~~~~~~~~~~D~~tp~~FDN~Yy~~l~~~--~gll~--SD~~L~~ 260 (316)
+|||++|||+|+|+| ||+. ..|.. .+..+ +++ .||.+|||+||++|+.+ +|+|. ||+.|+.
T Consensus 149 ~Gl~~~d~VaLsGaH-TiG~-------~hc~r--~~~~g----~~~-~tp~~fDn~Yy~~ll~~~~~gll~l~sD~~L~~ 213 (250)
T PLN02364 149 MGLSDKDIVALSGAH-TLGR-------CHKDR--SGFEG----AWT-SNPLIFDNSYFKELLSGEKEGLLQLVSDKALLD 213 (250)
T ss_pred cCCCHHHheeeecce-eecc-------ccCCC--CCCCC----CCC-CCCCccchHHHHHHhcCCcCCCccccchHHHcc
Confidence 599999999999999 8873 34632 11111 343 79999999999999998 89865 9999999
Q ss_pred CcCcHHHHHHHhhcHHHHHHHHHHHHHHhhhCCCC
Q 021207 261 DKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPL 295 (316)
Q Consensus 261 d~~t~~~V~~yA~d~~~F~~~F~~Am~Km~~l~v~ 295 (316)
|++|+.+|+.||.|+++|+++|++||+||++|++-
T Consensus 214 d~~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 214 DPVFRPLVEKYAADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred CchHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999974
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=6e-60 Score=436.90 Aligned_cols=219 Identities=26% Similarity=0.392 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHHhCcCchhhHHHHHhccccc-------cCCCCccccccccCCcccccccCCCCcc-hHHHHHHHHHHHH
Q 021207 47 DIIREQVKLLYKRHKNTAFSWLRNIFHDCAV-------QSCDASLLLDSTRKTLSEKEMDRSFGMR-NFRYIENIKEAVE 118 (316)
Q Consensus 47 ~iVr~~v~~~~~~~~~~a~~llRL~FHDcfv-------~GcDgSill~~t~~~~~E~~~~~N~gL~-g~~~Id~iK~~le 118 (316)
.-++..+.+.+ .+...+|.+|||+||||.+ +||||||++. .|+++++|.||+ ++++|++||+++
T Consensus 18 ~~~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~------~E~~~~~N~gL~~~~~~i~~iK~~~- 89 (251)
T PLN02879 18 QRCKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHP------QELAHDANNGLDIAVRLLDPIKELF- 89 (251)
T ss_pred HHHHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecCh------hhccCCCcCChHHHHHHHHHHHHHc-
Confidence 34566777766 4578999999999999975 7999999863 699999999996 999999999998
Q ss_pred hhCCCCccHHHHHHHhhhHHHHhhCCCCccccCCCCCCCCCchhhhhccCCCCCCCHHHHHHHHHHcCCCcccceeeecc
Q 021207 119 RECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLEV 198 (316)
Q Consensus 119 ~~cp~~VScADiialAardav~~~GGP~~~v~~GR~D~~~s~~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsg~ 198 (316)
++|||||||+||||+||+.+|||.|+|++||+|++++.+ +++||.|+.++++|++.|++|||+++|||||+|+
T Consensus 90 ----~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~---~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGa 162 (251)
T PLN02879 90 ----PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPP---EGRLPQATKGVDHLRDVFGRMGLNDKDIVALSGG 162 (251)
T ss_pred ----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCc---ccCCCCCCCCHHHHHHHHHHcCCCHHHHeeeecc
Confidence 479999999999999999999999999999999998854 5789999999999999999999999999999999
Q ss_pred CCCCCcchhhhhhccCCCCCCCCCCCccccCCCCCCCccChHHHHHHhhc--CCC--cccccccccCcCcHHHHHHHhhc
Q 021207 199 DPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDN--KGL--MMVDHQLATDKRTRPYVKKMAKS 274 (316)
Q Consensus 199 ~pti~~~~~~~l~~~Cp~~~~~~~~~~~~~~D~~tp~~FDN~Yy~~l~~~--~gl--l~SD~~L~~d~~t~~~V~~yA~d 274 (316)
| |++. .+|.. .+..+ .|| .||.+|||+||++|+.+ +|+ |+||++|+.|++|+++|++||.|
T Consensus 163 H-TiG~-------ah~~r--~g~~g----~~d-~tp~~FDN~Yy~~ll~~~~~gll~L~SD~aL~~D~~t~~~V~~~A~d 227 (251)
T PLN02879 163 H-TLGR-------CHKER--SGFEG----AWT-PNPLIFDNSYFKEILSGEKEGLLQLPTDKALLDDPLFLPFVEKYAAD 227 (251)
T ss_pred c-cccc-------ccccc--ccCCC----CCC-CCccceeHHHHHHHHcCCcCCCccchhhHHHhcCCcHHHHHHHHhhC
Confidence 9 8863 33543 11121 355 69999999999999998 887 67999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhCCCC
Q 021207 275 QDYFFKEFSRAITLLSENNPL 295 (316)
Q Consensus 275 ~~~F~~~F~~Am~Km~~l~v~ 295 (316)
|++|+++|++||+||++||+.
T Consensus 228 ~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 228 EDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred HHHHHHHHHHHHHHHHccCCC
Confidence 999999999999999999975
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=2.7e-56 Score=414.57 Aligned_cols=223 Identities=30% Similarity=0.447 Sum_probs=199.7
Q ss_pred HHHHHHHHHHHhCcCchhhHHHHHhcccccc--------CCCCccccccccCCcccccccCCCCc-chHHHHHHHHHHHH
Q 021207 48 IIREQVKLLYKRHKNTAFSWLRNIFHDCAVQ--------SCDASLLLDSTRKTLSEKEMDRSFGM-RNFRYIENIKEAVE 118 (316)
Q Consensus 48 iVr~~v~~~~~~~~~~a~~llRL~FHDcfv~--------GcDgSill~~t~~~~~E~~~~~N~gL-~g~~~Id~iK~~le 118 (316)
.|++.|++.+.+++.+++++|||+||||+++ ||||||+++ +|+++++|.|| +++++|++||.++|
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~------~e~~~~~N~~l~~~~~~l~~ik~~~~ 75 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFE------PELDRPENGGLDKALRALEPIKSAYD 75 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEecc------ccccCcccccHHHHHHHHHHHHHHcC
Confidence 5889999999999999999999999999996 999999996 39999999997 99999999999998
Q ss_pred hhCCCCccHHHHHHHhhhHHHHhh--CCCCccccCCCCCCCCCc--hhhhhccCCCCCCCHHHHHHHHHHcCCCccccee
Q 021207 119 RECPGVVSCADILVLSGRDGVVAL--GGPYIPLKTGRRDGRKSR--AEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVA 194 (316)
Q Consensus 119 ~~cp~~VScADiialAardav~~~--GGP~~~v~~GR~D~~~s~--~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVa 194 (316)
. |++|||||||++||++||+.+ |||.|+|++||+|++.+. ...+.+++|.|+.+++++++.|.++||+++||||
T Consensus 76 ~--~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VA 153 (255)
T cd00314 76 G--GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVA 153 (255)
T ss_pred C--CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHh
Confidence 8 899999999999999999999 999999999999999764 2334567888889999999999999999999999
Q ss_pred ee-ccCCCC-CcchhhhhhccCCCCCCCCCCCccccCCCCCCCccChHHHHHHhhcC----------------CCccccc
Q 021207 195 LL-EVDPAL-NPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNK----------------GLMMVDH 256 (316)
Q Consensus 195 Ls-g~~pti-~~~~~~~l~~~Cp~~~~~~~~~~~~~~D~~tp~~FDN~Yy~~l~~~~----------------gll~SD~ 256 (316)
|+ |+| ++ +. ..|.. .. .. ...+|+.||.+|||+||++|+.++ ++|+||+
T Consensus 154 L~~GaH-ti~G~-------~~~~~-~~-~~---~~~~~~~tp~~fDN~yy~~l~~~~~~~~~~~~~~~~~~~~~~l~sD~ 220 (255)
T cd00314 154 LSAGAH-TLGGK-------NHGDL-LN-YE---GSGLWTSTPFTFDNAYFKNLLDMNWEWRVGSPDPDGVKGPGLLPSDY 220 (255)
T ss_pred hccCCe-eccCc-------ccCCC-CC-cc---cCCCCCCCCCccchHHHHHHhcCCcccccCCccCCCcccCCCchhhH
Confidence 99 999 77 53 23432 10 11 124567899999999999999988 8999999
Q ss_pred ccccCcCcHHHHHHHhhcHHHHHHHHHHHHHHhhh
Q 021207 257 QLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSE 291 (316)
Q Consensus 257 ~L~~d~~t~~~V~~yA~d~~~F~~~F~~Am~Km~~ 291 (316)
.|+.|++|+.+|++||.|++.|+++|++||+||++
T Consensus 221 ~L~~d~~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 221 ALLSDSETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred HHhcCHhHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999984
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=5.2e-49 Score=381.75 Aligned_cols=242 Identities=19% Similarity=0.254 Sum_probs=208.5
Q ss_pred HHHHHHHHHHHHhC--------cCchhhHHHHHhccccc-------cCCC-CccccccccCCcccccccCCCCc-chHHH
Q 021207 47 DIIREQVKLLYKRH--------KNTAFSWLRNIFHDCAV-------QSCD-ASLLLDSTRKTLSEKEMDRSFGM-RNFRY 109 (316)
Q Consensus 47 ~iVr~~v~~~~~~~--------~~~a~~llRL~FHDcfv-------~GcD-gSill~~t~~~~~E~~~~~N~gL-~g~~~ 109 (316)
..|+++|++.+... ...+|.+|||+|||+.+ +|++ |+|.+. +|++++.|.|| ++..+
T Consensus 45 ~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~------pe~~~~~N~gL~~a~~~ 118 (409)
T cd00649 45 EALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFA------PLNSWPDNVNLDKARRL 118 (409)
T ss_pred HHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccc------cccCcHhhhhHHHHHHH
Confidence 68899999998864 47999999999999997 6886 788774 69999999999 78999
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHhhhHHHHhhCCCCccccCCCCCCCCCchh---------------------------
Q 021207 110 IENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAE--------------------------- 162 (316)
Q Consensus 110 Id~iK~~le~~cp~~VScADiialAardav~~~GGP~~~v~~GR~D~~~s~~~--------------------------- 162 (316)
+++||+++ |..||+||+|+||+.+||+.+|||.|++..||.|...+...
T Consensus 119 L~pik~k~----~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a 194 (409)
T cd00649 119 LWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPLAA 194 (409)
T ss_pred HHHHHHHc----CCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccchhh
Confidence 99999998 55799999999999999999999999999999999765321
Q ss_pred --------hhhc--cCCCCCCCHHHHHHHHHHcCCCcccceeee-ccC-----------------CCCCcchhhhhh--c
Q 021207 163 --------ILEQ--YLPDHNDSMSVVLERFAAIGIDAPGLVALL-EVD-----------------PALNPDHVPHML--H 212 (316)
Q Consensus 163 --------~~~~--~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-g~~-----------------pti~~~~~~~l~--~ 212 (316)
.+++ .||+|..++.+|++.|.+||||++|||||+ |+| |.+++.|+..|. .
T Consensus 195 ~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg~dP~~~~~~~~gLgw~~ 274 (409)
T cd00649 195 VQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVGPEPEAAPIEQQGLGWKN 274 (409)
T ss_pred hhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCCCCCCcCHHHHHhhcccc
Confidence 0223 699999999999999999999999999995 654 567777888885 8
Q ss_pred cCCCCCCCCCCCccccCC---CCCCCccChHHHHHHhh------------------------------------cCCCcc
Q 021207 213 KCPDAIPDPKAVQYVRND---RGTPMVLDNNYYRNILD------------------------------------NKGLMM 253 (316)
Q Consensus 213 ~Cp~~~~~~~~~~~~~~D---~~tp~~FDN~Yy~~l~~------------------------------------~~gll~ 253 (316)
.||. +.+..++ .+.+| +.||.+|||+||++|+. +.|+|+
T Consensus 275 ~Cp~-g~g~~t~-~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~~~~~gmL~ 352 (409)
T cd00649 275 SYGT-GKGKDTI-TSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPSKKHAPMMLT 352 (409)
T ss_pred cCCC-CCCCCCc-cccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCccccccccCcccch
Confidence 8997 3322221 34566 68999999999999998 458999
Q ss_pred cccccccCcCcHHHHHHHhhcHHHHHHHHHHHHHHh--hhCCCCCCCCC
Q 021207 254 VDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLL--SENNPLTGTKG 300 (316)
Q Consensus 254 SD~~L~~d~~t~~~V~~yA~d~~~F~~~F~~Am~Km--~~l~v~tg~~G 300 (316)
||++|+.|++++++|++||+|++.||++|++||+|| +.+||++...|
T Consensus 353 SD~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 353 TDLALRFDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred hhHhhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhhhcC
Confidence 999999999999999999999999999999999999 69999987665
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.4e-47 Score=392.69 Aligned_cols=243 Identities=18% Similarity=0.232 Sum_probs=206.1
Q ss_pred HHHHHHHHHHHHhC--------cCchhhHHHHHhccccc-------cCCC-CccccccccCCcccccccCCCCc-chHHH
Q 021207 47 DIIREQVKLLYKRH--------KNTAFSWLRNIFHDCAV-------QSCD-ASLLLDSTRKTLSEKEMDRSFGM-RNFRY 109 (316)
Q Consensus 47 ~iVr~~v~~~~~~~--------~~~a~~llRL~FHDcfv-------~GcD-gSill~~t~~~~~E~~~~~N~gL-~g~~~ 109 (316)
..|+++|++.+... ...+|-+|||+||++.+ +||+ |+|.+ .+|++++.|.+| +++.+
T Consensus 55 ~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf------~P~~sw~~N~~Ldka~~l 128 (716)
T TIGR00198 55 AAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRF------APLNSWPDNVNLDKARRL 128 (716)
T ss_pred HHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceec------ccccCchhhhhHHHHHHH
Confidence 56899999999864 47999999999999997 5874 68876 469999999999 78899
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHhhhHHHHhhCCCCccccCCCCCCCCCch--------------------------h-
Q 021207 110 IENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA--------------------------E- 162 (316)
Q Consensus 110 Id~iK~~le~~cp~~VScADiialAardav~~~GGP~~~v~~GR~D~~~s~~--------------------------~- 162 (316)
+++||++ ||++|||||||+|||++||+.+|||.|+|.+||+|+..+.. .
T Consensus 129 L~pIk~k----yp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~ 204 (716)
T TIGR00198 129 LWPIKKK----YGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPLAAT 204 (716)
T ss_pred HHHHHHH----CCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccchhh
Confidence 9999986 69999999999999999999999999999999999954320 0
Q ss_pred ---------hhhccCCCCCCCHHHHHHHHHHcCCCcccceeee-c-----------------cCCCCCcchhhhhhccCC
Q 021207 163 ---------ILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALL-E-----------------VDPALNPDHVPHMLHKCP 215 (316)
Q Consensus 163 ---------~~~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-g-----------------~~pti~~~~~~~l~~~Cp 215 (316)
+....+|.|..++.+|++.|++||||++|||||+ | ++|++++.|++.|+..||
T Consensus 205 ~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rlg~dP~~~~~~~~gLg~~c~ 284 (716)
T TIGR00198 205 EMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELIGPDPEGAPIEEQGLGWHNQ 284 (716)
T ss_pred hccccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccCCCCCCcCHHHHHHhcccCC
Confidence 1112699999999999999999999999999997 4 467888999999999999
Q ss_pred CC-CCCCCCCccccCC---CCCCCccChHHHHHHhhc----------------------------------CCCcccccc
Q 021207 216 DA-IPDPKAVQYVRND---RGTPMVLDNNYYRNILDN----------------------------------KGLMMVDHQ 257 (316)
Q Consensus 216 ~~-~~~~~~~~~~~~D---~~tp~~FDN~Yy~~l~~~----------------------------------~gll~SD~~ 257 (316)
.. +.+..++ .+.+| +.||.+|||+||++|+.+ .++|+||++
T Consensus 285 ~~~g~g~dt~-~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~~~~~~~mL~SDla 363 (716)
T TIGR00198 285 YGKGVGRDTM-TSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDPNKKHNPIMLDADLA 363 (716)
T ss_pred CCCCCCCCcc-cccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccccccccccccccCccchhHH
Confidence 62 2122221 34565 689999999999999975 689999999
Q ss_pred cccCcCcHHHHHHHhhcHHHHHHHHHHHHHHhh--hCCCCCCCCC
Q 021207 258 LATDKRTRPYVKKMAKSQDYFFKEFSRAITLLS--ENNPLTGTKG 300 (316)
Q Consensus 258 L~~d~~t~~~V~~yA~d~~~F~~~F~~Am~Km~--~l~v~tg~~G 300 (316)
|..|++++++|+.||.|+++|+++|++||+||+ .+|++...-|
T Consensus 364 L~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~~y~g 408 (716)
T TIGR00198 364 LRFDPEFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKSRYIG 408 (716)
T ss_pred hccCccHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchhhhcC
Confidence 999999999999999999999999999999999 5776654444
No 12
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=8.4e-46 Score=342.74 Aligned_cols=206 Identities=21% Similarity=0.294 Sum_probs=169.4
Q ss_pred HHHhCcCchhhHHHHHhcccc-------ccCCCCccccccccCCccccc-ccCCCCcchHHHHHHHHHHHHhhCCCCccH
Q 021207 56 LYKRHKNTAFSWLRNIFHDCA-------VQSCDASLLLDSTRKTLSEKE-MDRSFGMRNFRYIENIKEAVERECPGVVSC 127 (316)
Q Consensus 56 ~~~~~~~~a~~llRL~FHDcf-------v~GcDgSill~~t~~~~~E~~-~~~N~gL~g~~~Id~iK~~le~~cp~~VSc 127 (316)
....++++++++|||+||||| ++||||||+++.+ .+|+. .+.|.+|++|+.|+.+ +|||
T Consensus 34 ~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~---~~En~G~~~n~~l~~~~~i~~~----------~VSc 100 (264)
T cd08201 34 APGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELD---RPENIGSGFNTTLNFFVNFYSP----------RSSM 100 (264)
T ss_pred CcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCC---ChhhccCchhhccccceeeccC----------ccCH
Confidence 334788999999999999999 8899999999742 46776 5566778888877543 5999
Q ss_pred HHHHHHhhhHHHHhhCCCCccccCCCCCCCCCchhhhhccCCCCCCCHHHHHHHHHHcCCCcccceeeec-cCCCCCcch
Q 021207 128 ADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLE-VDPALNPDH 206 (316)
Q Consensus 128 ADiialAardav~~~GGP~~~v~~GR~D~~~s~~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsg-~~pti~~~~ 206 (316)
|||||||||+||+.||||.|+|++||+|++++.+. .||.|+.++++|++.|++|||+++|||+|+| +| ||+..
T Consensus 101 ADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~----glP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaH-TiG~a- 174 (264)
T cd08201 101 ADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQA----GVPEPQTDLGTTTESFRRQGFSTSEMIALVACGH-TLGGV- 174 (264)
T ss_pred HHHHHHHHHHHHHHcCCCeecccccCCCccccccc----cCCCCccCHHHHHHHHHHcCCChHHHheeecCCe-eeeec-
Confidence 99999999999999999999999999999988763 4999999999999999999999999999996 89 88643
Q ss_pred hhhhhccCCCC------CCCCCCCccccCCCCCCCccChHHHHHHhhcC--C--------CcccccccccCcCcHHHHHH
Q 021207 207 VPHMLHKCPDA------IPDPKAVQYVRNDRGTPMVLDNNYYRNILDNK--G--------LMMVDHQLATDKRTRPYVKK 270 (316)
Q Consensus 207 ~~~l~~~Cp~~------~~~~~~~~~~~~D~~tp~~FDN~Yy~~l~~~~--g--------ll~SD~~L~~d~~t~~~V~~ 270 (316)
.|... +...++ ..+|| .||.+|||+||.+++++. + .+.||..++....-. .++.
T Consensus 175 ------hc~~f~~~~~~g~~~~~--~~p~d-stp~~FDn~~f~E~l~g~~~~~L~~~~~~~~~sd~r~f~~d~n~-t~~~ 244 (264)
T cd08201 175 ------HSEDFPEIVPPGSVPDT--VLQFF-DTTIQFDNKVVTEYLSGTTNNPLVVGPNNTTNSDLRIFSSDGNV-TMNE 244 (264)
T ss_pred ------ccccchhhcCCccccCC--CCCCC-CCccccchHHHHHHhcCCCCCceeecCCCCccchhhheecCccH-HHHH
Confidence 34320 110011 34787 799999999999999874 2 467999999865543 5677
Q ss_pred HhhcHHHHHHHHHHHHHHhhh
Q 021207 271 MAKSQDYFFKEFSRAITLLSE 291 (316)
Q Consensus 271 yA~d~~~F~~~F~~Am~Km~~ 291 (316)
.| ++..|.+.++..+.||.+
T Consensus 245 l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 245 LA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred hc-ChHHHHHHHHHHHHHHhC
Confidence 77 789999999999999974
No 13
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=1e-43 Score=362.63 Aligned_cols=242 Identities=17% Similarity=0.264 Sum_probs=204.4
Q ss_pred HHHHHHHHHHHHhC--------cCchhhHHHHHhccccc-------cCCC-CccccccccCCcccccccCCCCc-chHHH
Q 021207 47 DIIREQVKLLYKRH--------KNTAFSWLRNIFHDCAV-------QSCD-ASLLLDSTRKTLSEKEMDRSFGM-RNFRY 109 (316)
Q Consensus 47 ~iVr~~v~~~~~~~--------~~~a~~llRL~FHDcfv-------~GcD-gSill~~t~~~~~E~~~~~N~gL-~g~~~ 109 (316)
..|+++|++.+... ...+|.+|||+||++.+ +||+ |+|.+ .+|++++.|.|| ++..+
T Consensus 57 ~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf------~pe~~w~~N~gL~ka~~~ 130 (726)
T PRK15061 57 EALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRF------APLNSWPDNVNLDKARRL 130 (726)
T ss_pred HHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccC------cccccchhhhhHHHHHHH
Confidence 57999999998864 47999999999999997 5886 68876 469999999999 78999
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHhhhHHHHhhCCCCccccCCCCCCCCCchhh--------------------------
Q 021207 110 IENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEI-------------------------- 163 (316)
Q Consensus 110 Id~iK~~le~~cp~~VScADiialAardav~~~GGP~~~v~~GR~D~~~s~~~~-------------------------- 163 (316)
+++||+++ |..||+||+|+||+..||+.+|||.|++..||.|...+....
T Consensus 131 L~pik~ky----~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~pl~ 206 (726)
T PRK15061 131 LWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLENPLA 206 (726)
T ss_pred HHHHHHHh----CCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccccccccccchh
Confidence 99999998 667999999999999999999999999999999986543210
Q ss_pred ----------h--hccCCCCCCCHHHHHHHHHHcCCCcccceeee-cc-----------------CCCCCcchhhhhh--
Q 021207 164 ----------L--EQYLPDHNDSMSVVLERFAAIGIDAPGLVALL-EV-----------------DPALNPDHVPHML-- 211 (316)
Q Consensus 164 ----------~--~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-g~-----------------~pti~~~~~~~l~-- 211 (316)
+ ...+|+|..++.+|++.|.+||||++|||||+ |+ +|.+++.+++.|.
T Consensus 207 a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rlgpdP~~a~~~~qgLgw~ 286 (726)
T PRK15061 207 AVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHVGPEPEAAPIEEQGLGWK 286 (726)
T ss_pred hhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCcccccCCCCCcCHHHHHhcccc
Confidence 0 12389999999999999999999999999996 54 4667777877774
Q ss_pred ccCCCCCCCCCCCccccCC---CCCCCccChHHHHHHhhc------------------------------------CCCc
Q 021207 212 HKCPDAIPDPKAVQYVRND---RGTPMVLDNNYYRNILDN------------------------------------KGLM 252 (316)
Q Consensus 212 ~~Cp~~~~~~~~~~~~~~D---~~tp~~FDN~Yy~~l~~~------------------------------------~gll 252 (316)
..||. +.+..++ ...+| +.||.+|||+||++|+.+ .++|
T Consensus 287 ~~c~~-g~g~dt~-tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~pd~~~~~~~~~~~ML 364 (726)
T PRK15061 287 NSYGS-GKGADTI-TSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVPDAHDPSKKHAPTML 364 (726)
T ss_pred ccCCC-CCCCCCc-cccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccCCcccccccccCcccc
Confidence 88997 3322222 33455 689999999999999985 4899
Q ss_pred ccccccccCcCcHHHHHHHhhcHHHHHHHHHHHHHHhh--hCCCCCCCCC
Q 021207 253 MVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLS--ENNPLTGTKG 300 (316)
Q Consensus 253 ~SD~~L~~d~~t~~~V~~yA~d~~~F~~~F~~Am~Km~--~l~v~tg~~G 300 (316)
+||++|..||+++++|++||.|+++|+++|++||.||+ .+|+++..-|
T Consensus 365 tSD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~ry~g 414 (726)
T PRK15061 365 TTDLALRFDPEYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKSRYLG 414 (726)
T ss_pred cccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchhhhcC
Confidence 99999999999999999999999999999999999995 4777765444
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=3.8e-39 Score=301.89 Aligned_cols=221 Identities=19% Similarity=0.282 Sum_probs=181.4
Q ss_pred HHHHHHHHhCcCchhhHHHHHhccccc-------cCCCCc-cccccccCCcccccccCCCC--c-chHHHHHHHHHHHHh
Q 021207 51 EQVKLLYKRHKNTAFSWLRNIFHDCAV-------QSCDAS-LLLDSTRKTLSEKEMDRSFG--M-RNFRYIENIKEAVER 119 (316)
Q Consensus 51 ~~v~~~~~~~~~~a~~llRL~FHDcfv-------~GcDgS-ill~~t~~~~~E~~~~~N~g--L-~g~~~Id~iK~~le~ 119 (316)
+.+++.+....-..+.||||+||++.+ +|++|+ |.| .+|++|+.|.+ | +.+.++++||+++..
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl------~pe~~w~~N~~~~L~~~~~~Le~ik~~~~~ 90 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRL------APQKDWEVNEPEELAKVLAVLEGIQKEFNE 90 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccC------ccccCcCccCcHHHHHHHHHHHHHHHHhcc
Confidence 567777778788999999999999987 699998 766 46999999998 8 789999999999832
Q ss_pred -hCCC-CccHHHHHHHhhhHHHHhhCC-----CCccccCCCCCCCCCchhhh--hccCCCCC------------CCHHHH
Q 021207 120 -ECPG-VVSCADILVLSGRDGVVALGG-----PYIPLKTGRRDGRKSRAEIL--EQYLPDHN------------DSMSVV 178 (316)
Q Consensus 120 -~cp~-~VScADiialAardav~~~GG-----P~~~v~~GR~D~~~s~~~~~--~~~LP~p~------------~~~~~l 178 (316)
.-++ .||.||+|+||+..||+.+|| |.|++.+||.|.+.+..... ...+|.+. ...+.|
T Consensus 91 ~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~L 170 (297)
T cd08200 91 SQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEML 170 (297)
T ss_pred cccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHH
Confidence 1112 699999999999999999999 99999999999987643210 11345332 245789
Q ss_pred HHHHHHcCCCcccceeeeccCCCCCcchhhhhhccCCCCCCCCCCCccccCCCCCCCccChHHHHHHhhcC---------
Q 021207 179 LERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNK--------- 249 (316)
Q Consensus 179 ~~~F~~~Gl~~~dlVaLsg~~pti~~~~~~~l~~~Cp~~~~~~~~~~~~~~D~~tp~~FDN~Yy~~l~~~~--------- 249 (316)
++.|.++|||++|||||+|+|.+++ .|+. ++. ..+| +.+|.+|||.||++|++..
T Consensus 171 rd~f~rlglsd~EmvaL~Gg~r~lG---------~~~~-~s~-----~G~w-T~~p~~f~N~fF~nLLd~~~~W~~~~~~ 234 (297)
T cd08200 171 VDKAQLLTLTAPEMTVLVGGLRVLG---------ANYG-GSK-----HGVF-TDRPGVLTNDFFVNLLDMSTEWKPADED 234 (297)
T ss_pred HHHHHhCCCChHHHhheecchhhcc---------cCCC-CCC-----CCCC-cCCCCccccHHHHHHhcccceeeecCCC
Confidence 9999999999999999999987775 4664 221 1244 5799999999999999521
Q ss_pred -----------C-----CcccccccccCcCcHHHHHHHhhc--HHHHHHHHHHHHHHhhhCC
Q 021207 250 -----------G-----LMMVDHQLATDKRTRPYVKKMAKS--QDYFFKEFSRAITLLSENN 293 (316)
Q Consensus 250 -----------g-----ll~SD~~L~~d~~t~~~V~~yA~d--~~~F~~~F~~Am~Km~~l~ 293 (316)
| .+++|..|.+|++.|++|+.||.| +++||+||++||.||+++.
T Consensus 235 ~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~A~~Klmeld 296 (297)
T cd08200 235 DGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQEKFVKDFVAAWTKVMNLD 296 (297)
T ss_pred CCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Confidence 1 267899999999999999999999 9999999999999999874
No 15
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=6.9e-34 Score=290.72 Aligned_cols=220 Identities=18% Similarity=0.296 Sum_probs=181.8
Q ss_pred HHHHHHHHhCcCchhhHHHHHhccccc-------cCCCCc-cccccccCCcccccccCCC--Cc-chHHHHHHHHHHHHh
Q 021207 51 EQVKLLYKRHKNTAFSWLRNIFHDCAV-------QSCDAS-LLLDSTRKTLSEKEMDRSF--GM-RNFRYIENIKEAVER 119 (316)
Q Consensus 51 ~~v~~~~~~~~~~a~~llRL~FHDcfv-------~GcDgS-ill~~t~~~~~E~~~~~N~--gL-~g~~~Id~iK~~le~ 119 (316)
..+++.+....-..+.|||++||++.+ +|++|+ |.|. +|++++.|. +| +.+.++++||+++..
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~------Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~ 515 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNEPAQLAKVLAVLEGIQAEFNA 515 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecc------cccCccccCHHHHHHHHHHHHHHHHHHhh
Confidence 467777777778899999999999987 699997 8774 699999999 99 789999999999964
Q ss_pred hCC--CCccHHHHHHHhhhHHHHhh---CC--CCccccCCCCCCCCCchhhhh---ccCCCCC------------CCHHH
Q 021207 120 ECP--GVVSCADILVLSGRDGVVAL---GG--PYIPLKTGRRDGRKSRAEILE---QYLPDHN------------DSMSV 177 (316)
Q Consensus 120 ~cp--~~VScADiialAardav~~~---GG--P~~~v~~GR~D~~~s~~~~~~---~~LP~p~------------~~~~~ 177 (316)
.-. ..||.||+|+||+..||+.+ || |.+++..||.|.+..... ++ ..+|.+. ...+.
T Consensus 516 ~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td-~esf~~l~P~Adgfrny~~~~~~~~~e~~ 594 (726)
T PRK15061 516 AQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTD-VESFAVLEPKADGFRNYLKKGYSVSPEEL 594 (726)
T ss_pred ccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCC-cccccccCCCCccccccccccCCCCHHHH
Confidence 321 25999999999999999999 68 999999999999876432 22 2456543 23478
Q ss_pred HHHHHHHcCCCcccceeeeccCCCCCcchhhhhhccCCCCCCCCCCCccccCCCCCCCccChHHHHHHhhcC--------
Q 021207 178 VLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNK-------- 249 (316)
Q Consensus 178 l~~~F~~~Gl~~~dlVaLsg~~pti~~~~~~~l~~~Cp~~~~~~~~~~~~~~D~~tp~~FDN~Yy~~l~~~~-------- 249 (316)
|++.|.++|||++|||||+|+|.+++ +|+. ++ ..+ +| +.+|.+|||.||++|++..
T Consensus 595 L~d~a~~lglt~~EmvaL~Gg~r~Lg---------~~~~-~S-~~G----~~-T~~p~~fsNdfFvnLLdm~~~W~~~~~ 658 (726)
T PRK15061 595 LVDKAQLLTLTAPEMTVLVGGLRVLG---------ANYG-GS-KHG----VF-TDRPGVLTNDFFVNLLDMGTEWKPTDE 658 (726)
T ss_pred HHHHHHhCCCChHHHhheecchhhcc---------cCCC-CC-CCC----CC-cCCCCccccHHHHHHhcCCceeeecCC
Confidence 99999999999999999999987775 4554 22 122 34 5789999999999999521
Q ss_pred ------------C---C--cccccccccCcCcHHHHHHHhhc--HHHHHHHHHHHHHHhhhCC
Q 021207 250 ------------G---L--MMVDHQLATDKRTRPYVKKMAKS--QDYFFKEFSRAITLLSENN 293 (316)
Q Consensus 250 ------------g---l--l~SD~~L~~d~~t~~~V~~yA~d--~~~F~~~F~~Am~Km~~l~ 293 (316)
| + +.+|..|.+|++.|++|+.||.| +++||+||++||.|+++++
T Consensus 659 ~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~Aw~Kvmeld 721 (726)
T PRK15061 659 DEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKEKFVRDFVAAWTKVMNLD 721 (726)
T ss_pred CCCceeeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCC
Confidence 1 1 47899999999999999999999 9999999999999999986
No 16
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=5.8e-34 Score=292.61 Aligned_cols=221 Identities=19% Similarity=0.294 Sum_probs=177.6
Q ss_pred HHHHHHHHH---HHhCcCchhhHHHHHhccccc-------cCCCCc-cccccccCCcccccccCC--CCc-chHHHHHHH
Q 021207 48 IIREQVKLL---YKRHKNTAFSWLRNIFHDCAV-------QSCDAS-LLLDSTRKTLSEKEMDRS--FGM-RNFRYIENI 113 (316)
Q Consensus 48 iVr~~v~~~---~~~~~~~a~~llRL~FHDcfv-------~GcDgS-ill~~t~~~~~E~~~~~N--~gL-~g~~~Id~i 113 (316)
+|+++|... +....-..+.||||+||++.+ +|++|+ |.|. +|++++.| .|| +.+.++++|
T Consensus 429 ~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~------pe~~w~~N~p~gL~~vl~~Le~I 502 (716)
T TIGR00198 429 LSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLE------PQKNWPVNEPTRLAKVLAVLEKI 502 (716)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecc------hhcCcccCCHHHHHHHHHHHHHH
Confidence 446665554 445667889999999999987 699997 7774 69999999 799 789999999
Q ss_pred HHHHHhhCCCCccHHHHHHHhhhHHHHhh---CCC--CccccCCCCCCCCCchhhhhccCC---CC------------CC
Q 021207 114 KEAVERECPGVVSCADILVLSGRDGVVAL---GGP--YIPLKTGRRDGRKSRAEILEQYLP---DH------------ND 173 (316)
Q Consensus 114 K~~le~~cp~~VScADiialAardav~~~---GGP--~~~v~~GR~D~~~s~~~~~~~~LP---~p------------~~ 173 (316)
|+++.. ..||.||+|+||+..||+.+ ||| .+++.+||.|.+..... ++...| .+ ..
T Consensus 503 k~~f~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td-~~~~~~l~p~adgfRn~~~~~~~~~ 578 (716)
T TIGR00198 503 QAEFAK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMTD-AESFTPLEPIADGFRNYLKRDYAVT 578 (716)
T ss_pred HHHcCC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCCC-ccccccCCCCCcccchhccccccCC
Confidence 999831 26999999999999999999 898 57889999999876432 222222 11 22
Q ss_pred CHHHHHHHHHHcCCCcccceeeeccCCCCCcchhhhhhccCCCCCCCCCCCccccCCCCCCCccChHHHHHHhhcC----
Q 021207 174 SMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNK---- 249 (316)
Q Consensus 174 ~~~~l~~~F~~~Gl~~~dlVaLsg~~pti~~~~~~~l~~~Cp~~~~~~~~~~~~~~D~~tp~~FDN~Yy~~l~~~~---- 249 (316)
..+.|++.|.++|||++|||||+|+|.+++ +|+. +.. .+ +| +.+|.+|||.||++|++..
T Consensus 579 ~~~~l~d~a~~lglt~~EmvaL~Gg~r~lG---------~~~~-~s~-~G----~~-T~~p~~f~NdfF~~LLd~~~~w~ 642 (716)
T TIGR00198 579 PEELLLDKAQLLTLTAPEMTVLIGGMRVLG---------ANHG-GSK-HG----VF-TDRVGVLSNDFFVNLLDMAYEWR 642 (716)
T ss_pred HHHHHHHHHHhCCCChHHHHheecchhhcc---------ccCC-CCC-CC----CC-cCCCCccccHHHHHHhcCCceee
Confidence 456799999999999999999999976875 4554 221 12 34 5799999999999999731
Q ss_pred ----------------C---C--cccccccccCcCcHHHHHHHhhcH--HHHHHHHHHHHHHhhhCCC
Q 021207 250 ----------------G---L--MMVDHQLATDKRTRPYVKKMAKSQ--DYFFKEFSRAITLLSENNP 294 (316)
Q Consensus 250 ----------------g---l--l~SD~~L~~d~~t~~~V~~yA~d~--~~F~~~F~~Am~Km~~l~v 294 (316)
| + ..+|..|.+|++.|++|+.||+|+ ++||+||++||.|+++++-
T Consensus 643 ~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~DF~~Aw~Klm~ldr 710 (716)
T TIGR00198 643 AADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAREKFVKDFVAAWTKVMNLDR 710 (716)
T ss_pred ecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHHhcccccchHHHHHHHHHHHHHhCCC
Confidence 2 2 278999999999999999999997 8999999999999999874
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.9e-28 Score=239.85 Aligned_cols=237 Identities=17% Similarity=0.236 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHHhC--------cCchhhHHHHHhcccccc----CCCCccccccccCCcccccccCCCCc-chHHHHHHH
Q 021207 47 DIIREQVKLLYKRH--------KNTAFSWLRNIFHDCAVQ----SCDASLLLDSTRKTLSEKEMDRSFGM-RNFRYIENI 113 (316)
Q Consensus 47 ~iVr~~v~~~~~~~--------~~~a~~llRL~FHDcfv~----GcDgSill~~t~~~~~E~~~~~N~gL-~g~~~Id~i 113 (316)
..|...++..+... ...+|.+|||+||-+.++ |--|+- .+..+|.++.++|.|.+| +++.++.+|
T Consensus 70 ~Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~--~G~qRFaPlnSWPDN~nLDKarRLLWPI 147 (730)
T COG0376 70 AAVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAG--GGQQRFAPLNSWPDNANLDKARRLLWPI 147 (730)
T ss_pred HHHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCC--CCceecccccCCCcccchHHHHHHhhhH
Confidence 35666666666653 358899999999999872 222222 234456789999999999 799999999
Q ss_pred HHHHHhhCCCCccHHHHHHHhhhHHHHhhCCCCccccCCCCCCCCCch--------------------------------
Q 021207 114 KEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRA-------------------------------- 161 (316)
Q Consensus 114 K~~le~~cp~~VScADiialAardav~~~GGP~~~v~~GR~D~~~s~~-------------------------------- 161 (316)
|+++ +..+|+||+|+||+.+|++.+|++.+.+..||.|-..+..
T Consensus 148 KkKY----G~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMG 223 (730)
T COG0376 148 KKKY----GRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMG 223 (730)
T ss_pred hHhh----cccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhheee
Confidence 9998 7799999999999999999999999999999999877654
Q ss_pred ------hhhhccCCCCCCCHHHHHHHHHHcCCCcccceeeec-cCCCCCcch------------------hhhh--hccC
Q 021207 162 ------EILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLE-VDPALNPDH------------------VPHM--LHKC 214 (316)
Q Consensus 162 ------~~~~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsg-~~pti~~~~------------------~~~l--~~~C 214 (316)
.. +...|+|..+..+++..|++|++|++|.|||++ .| +++... .+.| ...|
T Consensus 224 LIYVNPEG-png~PDpl~aA~dIRetFaRMaMNDeETVALiaGGH-tfGKtHGag~a~~vg~ePe~a~ie~qGlGW~~~~ 301 (730)
T COG0376 224 LIYVNPEG-PNGNPDPLAAARDIRETFARMAMNDEETVALIAGGH-TFGKTHGAGPASNVGPEPEAAPIEQQGLGWANTY 301 (730)
T ss_pred eEEeCCCC-CCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhccc-ccccccCCCchhhcCCCccccchhhhcccccccc
Confidence 11 235899999999999999999999999999994 34 332211 1111 1112
Q ss_pred CCCCCCCCCCc---cccCCCCCCCccChHHHHHHhhcC-----------------------------------CCccccc
Q 021207 215 PDAIPDPKAVQ---YVRNDRGTPMVLDNNYYRNILDNK-----------------------------------GLMMVDH 256 (316)
Q Consensus 215 p~~~~~~~~~~---~~~~D~~tp~~FDN~Yy~~l~~~~-----------------------------------gll~SD~ 256 (316)
.. +.+.++|+ -++| +.||++|||+||.+|+... .||++|.
T Consensus 302 g~-G~G~dtitsGlE~~W-t~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~MlttDl 379 (730)
T COG0376 302 GS-GKGPDTITSGLEGAW-TTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPMMLTTDL 379 (730)
T ss_pred CC-CcCcccccccccccC-CCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCceeeccch
Confidence 21 12222332 2445 5799999999999999652 3899999
Q ss_pred ccccCcCcHHHHHHHhhcHHHHHHHHHHHHHHhhhCC
Q 021207 257 QLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENN 293 (316)
Q Consensus 257 ~L~~d~~t~~~V~~yA~d~~~F~~~F~~Am~Km~~l~ 293 (316)
+|..||..+++.++|..|++.|.+.|++||.||.+-.
T Consensus 380 aLr~DP~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRD 416 (730)
T COG0376 380 ALRFDPEYEKISRRFLEDPDEFADAFARAWFKLTHRD 416 (730)
T ss_pred hhhcChHHHHHHHHHHhCHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999998743
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.61 E-value=6e-15 Score=146.37 Aligned_cols=216 Identities=20% Similarity=0.317 Sum_probs=166.6
Q ss_pred HHHHHHHHhCcCchhhHHHHHhccccc-------cCCCC-ccccccccCCcccccccCCC--Cc-chHHHHHHHHHHHHh
Q 021207 51 EQVKLLYKRHKNTAFSWLRNIFHDCAV-------QSCDA-SLLLDSTRKTLSEKEMDRSF--GM-RNFRYIENIKEAVER 119 (316)
Q Consensus 51 ~~v~~~~~~~~~~a~~llRL~FHDcfv-------~GcDg-Sill~~t~~~~~E~~~~~N~--gL-~g~~~Id~iK~~le~ 119 (316)
..+++.+....-....|+-.+|..+.+ +|.+| -|.|. +.++|+.|. -| +-+.+++.|.+...
T Consensus 452 ~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLa------PqkdWevN~P~~l~kvl~~le~iq~~fn- 524 (730)
T COG0376 452 AALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNQPAELAKVLAVLEKIQKEFN- 524 (730)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeec------ccccCCCCCHHHHHHHHHHHHHHHHHhc-
Confidence 366777777888889999999998876 47776 67774 689999996 45 67889999988885
Q ss_pred hCCCCccHHHHHHHhhhHHHHhh---CCCCc--cccCCCCCCCCCchhhhhcc--C-CC------------CCCCHHHHH
Q 021207 120 ECPGVVSCADILVLSGRDGVVAL---GGPYI--PLKTGRRDGRKSRAEILEQY--L-PD------------HNDSMSVVL 179 (316)
Q Consensus 120 ~cp~~VScADiialAardav~~~---GGP~~--~v~~GR~D~~~s~~~~~~~~--L-P~------------p~~~~~~l~ 179 (316)
..||.||+|+|++..||+.+ +|-.+ ++..||.|.++..... +.- | |- ....-+-|+
T Consensus 525 ---kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv-~sf~~LeP~aDGfRNy~~~~~~~~pe~~Lv 600 (730)
T COG0376 525 ---KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDV-ESFAVLEPIADGFRNYVKKDYVLTPEELLV 600 (730)
T ss_pred ---CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcch-hhhhcccccchhhhhhccCCCcCCHHHHHH
Confidence 46999999999999999986 77665 5669999997754321 110 1 11 112344588
Q ss_pred HHHHHcCCCcccceeeeccCCCCCcchhhhhhccCCCCCCCCCCCccccCCCCCCCccChHHHHHHhhcC----------
Q 021207 180 ERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNK---------- 249 (316)
Q Consensus 180 ~~F~~~Gl~~~dlVaLsg~~pti~~~~~~~l~~~Cp~~~~~~~~~~~~~~D~~tp~~FDN~Yy~~l~~~~---------- 249 (316)
+.-+-.+|+..||++|+|.-..++.+| ++... .|. +..|.++.|.||.||++..
T Consensus 601 DkAqlL~LtapemtVLiGGlRvLg~n~-----------g~s~~---GVf--T~~pg~LtndFFvnLlDM~~~W~~~~~~~ 664 (730)
T COG0376 601 DKAQLLTLTAPEMTVLIGGLRVLGANY-----------GGSKH---GVF--TDRPGVLTNDFFVNLLDMGTEWKPTDDAR 664 (730)
T ss_pred HHHHHhccCCccceEEEcceEeeccCC-----------CCCcc---cee--ccCcccccchhhhhhhhccceeeeccccc
Confidence 888889999999999999877777665 22222 233 3479999999999999752
Q ss_pred ----------C-----CcccccccccCcCcHHHHHHHhhc--HHHHHHHHHHHHHHhhhCC
Q 021207 250 ----------G-----LMMVDHQLATDKRTRPYVKKMAKS--QDYFFKEFSRAITLLSENN 293 (316)
Q Consensus 250 ----------g-----ll~SD~~L~~d~~t~~~V~~yA~d--~~~F~~~F~~Am~Km~~l~ 293 (316)
| --..|..+.+++..|.+.+.||.+ +++|.+||+.||.|..++.
T Consensus 665 ~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ekFv~DFvaaw~kVMn~D 725 (730)
T COG0376 665 GLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYASDDAKEKFVKDFVAAWTKVMNLD 725 (730)
T ss_pred cceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccc
Confidence 2 135889999999999999999986 7899999999999999875
No 19
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=69.65 E-value=4.2 Score=32.61 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=12.9
Q ss_pred CCchHHHHHHHHHHHHHHHhhhh
Q 021207 1 MGTKAVFLLLALLSFSAVSLRSA 23 (316)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (316)
|+++..+||.++|+.+|+..+.+
T Consensus 1 MaSK~~llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEV 23 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhh
Confidence 88777555545555444444434
No 20
>PTZ00411 transaldolase-like protein; Provisional
Probab=61.76 E-value=21 Score=35.04 Aligned_cols=147 Identities=15% Similarity=0.210 Sum_probs=76.4
Q ss_pred ccHHHHHHHhhhHHHH--hhCCCCccccCCCCCCCCCchhhhhccCCCC---CCCHHHHHHHHHHcCCCc----------
Q 021207 125 VSCADILVLSGRDGVV--ALGGPYIPLKTGRRDGRKSRAEILEQYLPDH---NDSMSVVLERFAAIGIDA---------- 189 (316)
Q Consensus 125 VScADiialAardav~--~~GGP~~~v~~GR~D~~~s~~~~~~~~LP~p---~~~~~~l~~~F~~~Gl~~---------- 189 (316)
|.|-=.+.|....|+. .+|-..+..+.||.+...-.+.......+.. -..+.++...|++.|+..
T Consensus 161 I~~N~TlvFS~~QA~aaaeAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~ 240 (333)
T PTZ00411 161 IHCNLTLLFSFAQAVACAQAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNT 240 (333)
T ss_pred CceeEeEecCHHHHHHHHHcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCCH
Confidence 5544444444444433 3477888999999966432211111111111 235778888898888764
Q ss_pred ccceeeeccCC-CCCcchhhhhhccCC-CCCCCCCCCc--cccCCCCCCCccChHHHHHHhhcCCCcccccccccCcCcH
Q 021207 190 PGLVALLEVDP-ALNPDHVPHMLHKCP-DAIPDPKAVQ--YVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTR 265 (316)
Q Consensus 190 ~dlVaLsg~~p-ti~~~~~~~l~~~Cp-~~~~~~~~~~--~~~~D~~tp~~FDN~Yy~~l~~~~gll~SD~~L~~d~~t~ 265 (316)
+|+..|.|+|- |+.|...++|... | . .. ...+. ...-....+..+|-..|+-..+..++= -..+.
T Consensus 241 ~qi~~laG~D~lTi~p~ll~~L~~~-~~~-~~-~~~l~~~~~~~~~~~~~~~~e~~fr~~~~~d~ma--------~ekl~ 309 (333)
T PTZ00411 241 GEILELAGCDKLTISPKLLEELANT-EDG-PV-ERKLDPEKLTEDTEKLPELTEKEFRWELNEDAMA--------TEKLA 309 (333)
T ss_pred HHHHHHHCCCEEeCCHHHHHHHHhC-CCc-cc-CcccCcccccccccccCCCCHHHHHHHhCCCcch--------HHHHH
Confidence 44445557774 7888888888653 2 1 00 00000 011111234567888887644332221 11233
Q ss_pred HHHHHHhhcHHHHHHHH
Q 021207 266 PYVKKMAKSQDYFFKEF 282 (316)
Q Consensus 266 ~~V~~yA~d~~~F~~~F 282 (316)
.-++.|+.|+....+-.
T Consensus 310 ~gir~F~~d~~~Le~~i 326 (333)
T PTZ00411 310 EGIRNFAKDLEKLENVI 326 (333)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45677777766554433
No 21
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=48.10 E-value=15 Score=28.57 Aligned_cols=19 Identities=16% Similarity=0.045 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhhCCCC
Q 021207 277 YFFKEFSRAITLLSENNPL 295 (316)
Q Consensus 277 ~F~~~F~~Am~Km~~l~v~ 295 (316)
+..++|..||.||+.||..
T Consensus 2 ~m~~~F~~am~KlavLG~d 20 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGHD 20 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS-
T ss_pred hHHHHHHHHHHHHHHhcCC
Confidence 4568999999999998754
No 22
>PHA03163 hypothetical protein; Provisional
Probab=40.37 E-value=40 Score=26.79 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCccccCCc
Q 021207 4 KAVFLLLALLSFSAVSLRSALAENEEDPGLVMNFYKDTCP 43 (316)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~fY~~sCP 43 (316)
+-|||+ |.+||+=-+---.-+.+...++-..+||+.+|-
T Consensus 8 ~~i~~l-i~lcl~~nv~~~~~~~n~t~p~~~~~FYs~~C~ 46 (92)
T PHA03163 8 HGIFLL-ICLCLLDNVSQVLCQNNSTTPHDFDMFHQYDCN 46 (92)
T ss_pred hhHHHH-HHHHHhhhhHHHHHhcCCCCCCCCcccccCCCC
Confidence 346777 777875322211101111334567889999996
No 23
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.47 E-value=1.5e+02 Score=24.99 Aligned_cols=86 Identities=12% Similarity=0.109 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhhhccccC-CCC----CCCCCccccCCccHHHHHHHHHHHHHHhCcCchhhHHHHHhccccccCCCCccc
Q 021207 11 ALLSFSAVSLRSALAENE-EDP----GLVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLL 85 (316)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~-~~~----~L~~~fY~~sCP~~e~iVr~~v~~~~~~~~~~a~~llRL~FHDcfv~GcDgSil 85 (316)
+..|+||.+|..-.|.-+ ..+ .=+.+|-+++--+- .-|++.+...+.+...+.|.=+|++|-..-
T Consensus 7 i~tc~lL~~f~aqga~feep~as~aqpgs~~~~~~~vhDe-eHIkeHLegki~~~a~mtpeqlqfHYF~MH--------- 76 (144)
T KOG4065|consen 7 ISTCFLLLVFEAQGAKFEEPAASFAQPGSMGLDKKEVHDE-EHIKEHLEGKIEKVAKMTPEQLQFHYFSMH--------- 76 (144)
T ss_pred HHHHHHHHHHhcChhhhcCchhhhcCCccccccccccccH-HHHHHHHhcccchhhhCCHHHHhhhhhhhh---------
Confidence 677999998774432211 111 13455655554444 456778888888777888999888873321
Q ss_pred cccccCCcccccccCCCCcchHHHHHHHHHHH
Q 021207 86 LDSTRKTLSEKEMDRSFGMRNFRYIENIKEAV 117 (316)
Q Consensus 86 l~~t~~~~~E~~~~~N~gL~g~~~Id~iK~~l 117 (316)
+-..|+-|.|++++..|....
T Consensus 77 -----------Dldknn~lDGiEl~kAiTH~H 97 (144)
T KOG4065|consen 77 -----------DLDKNNFLDGIELLKAITHTH 97 (144)
T ss_pred -----------ccCcCCcchHHHHHHHHHHHh
Confidence 222355567888887765443
No 24
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=29.19 E-value=2.3e+02 Score=27.59 Aligned_cols=144 Identities=17% Similarity=0.212 Sum_probs=74.8
Q ss_pred ccHHHHHHHhhhHHH--HhhCCCCccccCCCCCCCCCchhhhhccCC----CCCCCHHHHHHHHHHcCCCccccee----
Q 021207 125 VSCADILVLSGRDGV--VALGGPYIPLKTGRRDGRKSRAEILEQYLP----DHNDSMSVVLERFAAIGIDAPGLVA---- 194 (316)
Q Consensus 125 VScADiialAardav--~~~GGP~~~v~~GR~D~~~s~~~~~~~~LP----~p~~~~~~l~~~F~~~Gl~~~dlVa---- 194 (316)
|+|-=.+.|....|+ ..+|-..+..+.||.|...-..... ...+ ++-..+.++.+.|++.|+..+=|+|
T Consensus 149 I~vN~TliFS~~Qa~aaa~AGa~~ISPFVgRi~dw~~~~~g~-~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn 227 (317)
T TIGR00874 149 IHCNLTLLFSFVQAIACAEAKVTLISPFVGRILDWYKAATGK-KEYSIEEDPGVASVKKIYNYYKKHGYPTEVMGASFRN 227 (317)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchHhHhhhhccCc-cccccccCchHHHHHHHHHHHHHcCCCcEEEeeccCC
Confidence 554433444444443 3348888999999987632111000 0111 1234678888999999987554443
Q ss_pred ------eeccCC-CCCcchhhhhhccCCC-C-CCCCCCCccccCCCCCCCccChHHHHHHhhcCCCcccccccccCcCcH
Q 021207 195 ------LLEVDP-ALNPDHVPHMLHKCPD-A-IPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTR 265 (316)
Q Consensus 195 ------Lsg~~p-ti~~~~~~~l~~~Cp~-~-~~~~~~~~~~~~D~~tp~~FDN~Yy~~l~~~~gll~SD~~L~~d~~t~ 265 (316)
|.|+|- |+.|....+|...-.. . .-.... ....+ ..|..+|-..|+-.+...++ . -....
T Consensus 228 ~~qv~~laG~d~~Ti~p~ll~~L~~~~~~~~~~l~~~~--~~~~~-~~~~~~~e~~fr~~~~~d~m-------a-~ekl~ 296 (317)
T TIGR00874 228 KEEILALAGCDRLTISPALLDELKESTGPVERKLDPES--AKKVD-KQPIILDESEFRFLHNEDAM-------A-TEKLA 296 (317)
T ss_pred HHHHHHHHCCCeEeCCHHHHHHHHhCCCCcCccCCccc--ccccc-ccCCCCCHHHHHHHhCCCcc-------h-HHHHH
Confidence 336664 7888888887653211 0 000000 00011 23456788888855543322 1 11234
Q ss_pred HHHHHHhhcHHHHHH
Q 021207 266 PYVKKMAKSQDYFFK 280 (316)
Q Consensus 266 ~~V~~yA~d~~~F~~ 280 (316)
.-++.|+.|+.....
T Consensus 297 ~gir~F~~d~~~Le~ 311 (317)
T TIGR00874 297 EGIRKFAADQEKLEK 311 (317)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456667766655433
No 25
>PF15240 Pro-rich: Proline-rich
Probab=26.62 E-value=48 Score=29.70 Aligned_cols=15 Identities=53% Similarity=0.658 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhhhh
Q 021207 8 LLLALLSFSAVSLRSA 23 (316)
Q Consensus 8 ~~~~~~~~~~~~~~~~ 23 (316)
|+ |+|+..||+|+++
T Consensus 2 Ll-VLLSvALLALSSA 16 (179)
T PF15240_consen 2 LL-VLLSVALLALSSA 16 (179)
T ss_pred hh-HHHHHHHHHhhhc
Confidence 44 8888888888876
No 26
>PRK05269 transaldolase B; Provisional
Probab=26.53 E-value=2e+02 Score=28.05 Aligned_cols=88 Identities=16% Similarity=0.147 Sum_probs=51.4
Q ss_pred ccHHHHHHHhhhHHHH--hhCCCCccccCCCCCCCCCchhhhhcc---CCCCCCCHHHHHHHHHHcCCCccccee-----
Q 021207 125 VSCADILVLSGRDGVV--ALGGPYIPLKTGRRDGRKSRAEILEQY---LPDHNDSMSVVLERFAAIGIDAPGLVA----- 194 (316)
Q Consensus 125 VScADiialAardav~--~~GGP~~~v~~GR~D~~~s~~~~~~~~---LP~p~~~~~~l~~~F~~~Gl~~~dlVa----- 194 (316)
|.|-=.+.|....|+. .+|-..+..+.||.|...-........ --++-..+.++...|++.|+..+=|.|
T Consensus 151 I~vn~TlvFs~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~im~ASfrn~ 230 (318)
T PRK05269 151 INCNLTLLFSFAQARACAEAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTVVMGASFRNT 230 (318)
T ss_pred CceeEeEecCHHHHHHHHHcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCceEEeeccCCH
Confidence 5554444444444433 347788999999998642111000000 011234688899999999987765554
Q ss_pred -----eeccCC-CCCcchhhhhhc
Q 021207 195 -----LLEVDP-ALNPDHVPHMLH 212 (316)
Q Consensus 195 -----Lsg~~p-ti~~~~~~~l~~ 212 (316)
|.|+|- |+.|...++|..
T Consensus 231 ~~v~~laG~d~vTi~p~ll~~l~~ 254 (318)
T PRK05269 231 GQILELAGCDRLTISPALLEELAA 254 (318)
T ss_pred HHHHHHhCCCeEECCHHHHHHHHh
Confidence 225553 777877777764
No 27
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.11 E-value=2.9e+02 Score=21.05 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhCcCchhhHHHHHhcccc
Q 021207 47 DIIREQVKLLYKRHKNTAFSWLRNIFHDCA 76 (316)
Q Consensus 47 ~iVr~~v~~~~~~~~~~a~~llRL~FHDcf 76 (316)
-|.|+.+++.+.++|.+-...||+-+---+
T Consensus 23 fiark~~~k~lk~NPpine~~iR~M~~qmG 52 (71)
T COG3763 23 FIARKQMKKQLKDNPPINEEMIRMMMAQMG 52 (71)
T ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhC
Confidence 499999999999999999999999886553
No 28
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=23.23 E-value=1.5e+02 Score=28.85 Aligned_cols=86 Identities=16% Similarity=0.176 Sum_probs=51.8
Q ss_pred ccHHHHHHHhhhHHHHh--hCCCCccccCCCCCCCCCchhhhhccCCC-----CCCCHHHHHHHHHHcCCCccccee---
Q 021207 125 VSCADILVLSGRDGVVA--LGGPYIPLKTGRRDGRKSRAEILEQYLPD-----HNDSMSVVLERFAAIGIDAPGLVA--- 194 (316)
Q Consensus 125 VScADiialAardav~~--~GGP~~~v~~GR~D~~~s~~~~~~~~LP~-----p~~~~~~l~~~F~~~Gl~~~dlVa--- 194 (316)
|+|-=.+.|....|+.. +|-..+..+.||.|...-... ....|. +-..+.++...|++.|+..+=|+|
T Consensus 149 I~vn~TlvFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~--~~~~~~~~~d~Gv~~v~~i~~~~~~~~~~T~vmaASfR 226 (313)
T cd00957 149 IHCNLTLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHS--GDKAYTAEEDPGVASVKKIYNYYKKFGYKTKVMGASFR 226 (313)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchHHHhhhhcc--ccccCCccCCcHHHHHHHHHHHHHHcCCCcEEEecccC
Confidence 66655555555554433 377788999999985421110 000111 223588888999999987654443
Q ss_pred -------eeccCC-CCCcchhhhhhc
Q 021207 195 -------LLEVDP-ALNPDHVPHMLH 212 (316)
Q Consensus 195 -------Lsg~~p-ti~~~~~~~l~~ 212 (316)
|.|+|- |+.|...++|..
T Consensus 227 n~~~v~~laG~d~~Ti~p~ll~~L~~ 252 (313)
T cd00957 227 NIGQILALAGCDYLTISPALLEELKN 252 (313)
T ss_pred CHHHHHHHhCCCeEEcCHHHHHHHHh
Confidence 336664 777877777754
No 29
>PLN02161 beta-amylase
Probab=22.19 E-value=1.3e+02 Score=31.29 Aligned_cols=36 Identities=25% Similarity=0.250 Sum_probs=25.4
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHhh-----hCCCCCCCCCcccccc
Q 021207 267 YVKKMAKSQDYFFKEFSRAITLLS-----ENNPLTGTKGEIRKVC 306 (316)
Q Consensus 267 ~V~~yA~d~~~F~~~F~~Am~Km~-----~l~v~tg~~GeiR~~C 306 (316)
-++.|.+ |.+.|...|.-+. +|.|=-|..||.|--.
T Consensus 234 plq~Y~D----fm~SFr~~F~~~~~~~I~eI~VGlGP~GELRYPS 274 (531)
T PLN02161 234 AVQCYED----FMLSFSTKFEPYIGNVIEEISIGLGPSGELRYPA 274 (531)
T ss_pred HHHHHHH----HHHHHHHHHHHHhcCceEEEEeccccCccccCCC
Confidence 4677753 7777777777754 5555568999999753
No 30
>KOG3803 consensus Transcription factor containing C2HC type Zn finger [Transcription]
Probab=22.16 E-value=47 Score=35.39 Aligned_cols=35 Identities=23% Similarity=0.461 Sum_probs=24.2
Q ss_pred CCccHHHHHHHHHHHHHHhCcCchhhHHHHHhccccccCCCCcccccc
Q 021207 41 TCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDS 88 (316)
Q Consensus 41 sCP~~e~iVr~~v~~~~~~~~~~a~~llRL~FHDcfv~GcDgSill~~ 88 (316)
-||-+|+++|..|...-+.- -|=+-|||||--+.+
T Consensus 671 gcpladks~Rslma~~sqeL-------------kCPTPGCDGSGHiTG 705 (968)
T KOG3803|consen 671 GCPLADKSLRSLMAAGSQEL-------------KCPTPGCDGSGHITG 705 (968)
T ss_pred CCchhHHHHHHHHhcccccc-------------cCCCCCCCCCCcccc
Confidence 48888888887665443221 366889999986654
No 31
>PF09349 OHCU_decarbox: OHCU decarboxylase; InterPro: IPR018020 The proteins in this entry are OHCU decarboxylase, an enzyme of the purine catabolism that catalyses the conversion of OHCU into S(+)-allantoin []; it is the third step of the conversion of uric acid (a purine derivative) to allantoin. Step one is catalysed by urate oxidase (IPR002042 from INTERPRO) and step two is catalysed by hydroxyisourate hydrolase (IPR000895 from INTERPRO). ; PDB: 3O7I_B 3O7H_B 3O7J_A 3O7K_A 2Q37_A 2O70_B 2O73_C 2O74_C 2O8I_A.
Probab=20.81 E-value=47 Score=28.77 Aligned_cols=36 Identities=11% Similarity=0.149 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHHHH--cCCCcccceeeeccCCCCCcc
Q 021207 170 DHNDSMSVVLERFAA--IGIDAPGLVALLEVDPALNPD 205 (316)
Q Consensus 170 ~p~~~~~~l~~~F~~--~Gl~~~dlVaLsg~~pti~~~ 205 (316)
.|+.+.++|++.+.. .+++.+|...++.+||-|+..
T Consensus 31 rPf~s~~~L~~a~~~~~~~~~~~~~~~~l~aHP~lg~~ 68 (159)
T PF09349_consen 31 RPFASVDALIAAADEAVRSLSEEDKLEALRAHPRLGER 68 (159)
T ss_dssp GS-SSHHHHHHHHHHHHHCS-HHHHHHHHHTS--TTSH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHhCcccccc
Confidence 488999999999996 699999999999999999863
No 32
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=20.79 E-value=93 Score=28.16 Aligned_cols=67 Identities=18% Similarity=0.295 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHcCCCcccceeeeccCCCCCcchhhhhhccCCCCCCCCCCCccccCCCCCCCccChHHHHHHhhcC
Q 021207 173 DSMSVVLERFAAIGIDAPGLVALLEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNK 249 (316)
Q Consensus 173 ~~~~~l~~~F~~~Gl~~~dlVaLsg~~pti~~~~~~~l~~~Cp~~~~~~~~~~~~~~D~~tp~~FDN~Yy~~l~~~~ 249 (316)
.-++.|++.=+++|++ +|-+||+.|++.+....++-..|++ .++ .+.- .++-..||-++-+++.++.
T Consensus 78 eVaeRL~ei~K~~g~d---~vRiSG~EP~l~~EHvlevIeLl~~-----~tF-vlET-NG~~~g~drslv~el~nr~ 144 (228)
T COG5014 78 EVAERLLEISKKRGCD---LVRISGAEPILGREHVLEVIELLVN-----NTF-VLET-NGLMFGFDRSLVDELVNRL 144 (228)
T ss_pred HHHHHHHHHHHhcCCc---EEEeeCCCccccHHHHHHHHHhccC-----ceE-EEEe-CCeEEecCHHHHHHHhcCC
Confidence 3356677777899985 7899999999999999999999986 221 1111 2455667899888888764
Done!