Query 021208
Match_columns 316
No_of_seqs 247 out of 1290
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 08:27:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021208.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021208hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.4 5.3E-13 1.2E-17 97.1 5.0 53 143-195 4-59 (60)
2 PF00010 HLH: Helix-loop-helix 99.4 7.1E-13 1.5E-17 95.6 4.3 49 144-192 2-55 (55)
3 smart00353 HLH helix loop heli 99.3 3.1E-12 6.6E-17 91.2 5.7 49 148-196 1-52 (53)
4 KOG1319 bHLHZip transcription 98.9 9.4E-10 2E-14 97.3 3.6 65 140-204 59-130 (229)
5 KOG1318 Helix loop helix trans 98.9 3.6E-09 7.9E-14 104.2 6.4 59 142-200 232-294 (411)
6 cd04895 ACT_ACR_1 ACT domain-c 98.3 5.1E-06 1.1E-10 63.6 9.7 67 246-313 3-69 (72)
7 cd04897 ACT_ACR_3 ACT domain-c 98.3 5.3E-06 1.2E-10 64.0 9.8 67 246-313 3-69 (75)
8 cd04927 ACT_ACR-like_2 Second 98.3 4.1E-06 9E-11 64.3 9.2 71 245-316 1-75 (76)
9 cd04896 ACT_ACR-like_3 ACT dom 98.3 5.6E-06 1.2E-10 63.9 9.6 66 246-313 2-69 (75)
10 KOG4304 Transcriptional repres 98.2 5.9E-07 1.3E-11 84.1 3.0 56 142-197 31-94 (250)
11 cd04900 ACT_UUR-like_1 ACT dom 98.2 2.6E-05 5.6E-10 59.0 11.0 69 246-315 3-72 (73)
12 KOG2483 Upstream transcription 98.2 6.3E-06 1.4E-10 76.3 8.4 64 140-203 56-122 (232)
13 KOG3561 Aryl-hydrocarbon recep 98.2 1.5E-06 3.3E-11 92.1 4.9 52 143-194 20-75 (803)
14 cd04925 ACT_ACR_2 ACT domain-c 98.1 3.8E-05 8.2E-10 58.5 10.3 69 246-314 2-70 (74)
15 KOG2588 Predicted DNA-binding 98.0 4.5E-06 9.8E-11 89.0 3.9 62 142-203 275-337 (953)
16 cd04899 ACT_ACR-UUR-like_2 C-t 97.8 0.00032 6.9E-09 51.7 10.3 68 246-315 2-69 (70)
17 KOG3960 Myogenic helix-loop-he 97.7 8.9E-05 1.9E-09 68.8 6.2 61 143-203 118-180 (284)
18 cd04928 ACT_TyrKc Uncharacteri 97.5 0.0014 3E-08 49.7 9.4 64 246-312 3-67 (68)
19 KOG0561 bHLH transcription fac 97.5 8.9E-05 1.9E-09 70.4 3.4 57 143-199 60-118 (373)
20 KOG4029 Transcription factor H 97.4 0.00015 3.3E-09 66.8 4.2 61 141-201 107-171 (228)
21 cd04926 ACT_ACR_4 C-terminal 97.4 0.0021 4.5E-08 48.5 9.8 66 246-313 3-68 (72)
22 PRK05007 PII uridylyl-transfer 97.3 0.0012 2.7E-08 71.9 10.6 71 242-314 806-876 (884)
23 cd04873 ACT_UUR-ACR-like ACT d 97.3 0.0046 1E-07 45.0 10.4 68 246-315 2-69 (70)
24 PLN03217 transcription factor 97.2 0.001 2.2E-08 52.2 5.7 51 155-205 19-75 (93)
25 PF13740 ACT_6: ACT domain; PD 97.1 0.0075 1.6E-07 46.0 10.1 66 244-313 2-67 (76)
26 PRK00275 glnD PII uridylyl-tra 97.0 0.0062 1.3E-07 66.6 12.1 79 234-313 802-886 (895)
27 cd04893 ACT_GcvR_1 ACT domains 96.9 0.014 3.1E-07 44.6 10.1 66 245-314 2-67 (77)
28 PRK01759 glnD PII uridylyl-tra 96.9 0.0061 1.3E-07 66.4 10.6 71 242-314 781-851 (854)
29 PRK04374 PII uridylyl-transfer 96.8 0.011 2.5E-07 64.4 12.4 79 234-314 784-864 (869)
30 PF01842 ACT: ACT domain; Int 96.8 0.011 2.3E-07 42.5 8.4 61 246-311 2-64 (66)
31 PRK05092 PII uridylyl-transfer 96.7 0.013 2.8E-07 64.3 12.0 79 234-313 831-911 (931)
32 PRK03381 PII uridylyl-transfer 96.6 0.017 3.6E-07 62.3 11.4 68 243-313 706-773 (774)
33 cd04872 ACT_1ZPV ACT domain pr 96.5 0.017 3.7E-07 45.0 8.3 68 245-314 2-69 (88)
34 PRK00194 hypothetical protein; 96.4 0.024 5.1E-07 44.2 8.4 67 244-312 3-69 (90)
35 TIGR01693 UTase_glnD [Protein- 96.4 0.022 4.7E-07 62.0 10.9 70 243-314 778-847 (850)
36 PRK03059 PII uridylyl-transfer 96.4 0.022 4.8E-07 62.1 10.8 69 242-314 784-852 (856)
37 cd04869 ACT_GcvR_2 ACT domains 96.4 0.06 1.3E-06 40.7 10.2 66 247-314 2-72 (81)
38 cd04875 ACT_F4HF-DF N-terminal 96.3 0.045 9.8E-07 41.0 9.1 67 246-314 1-69 (74)
39 TIGR01693 UTase_glnD [Protein- 96.3 0.027 5.8E-07 61.3 10.9 79 233-312 655-740 (850)
40 PRK03381 PII uridylyl-transfer 96.3 0.039 8.5E-07 59.5 12.0 79 234-313 588-667 (774)
41 PF13291 ACT_4: ACT domain; PD 96.1 0.033 7.1E-07 42.3 7.7 63 244-308 6-69 (80)
42 cd04870 ACT_PSP_1 CT domains f 96.1 0.063 1.4E-06 40.5 9.2 66 246-314 1-66 (75)
43 PRK01759 glnD PII uridylyl-tra 96.1 0.049 1.1E-06 59.4 11.5 79 233-312 664-748 (854)
44 PRK05007 PII uridylyl-transfer 96.0 0.056 1.2E-06 59.2 11.6 79 233-312 688-772 (884)
45 COG2844 GlnD UTP:GlnB (protein 95.9 0.037 8.1E-07 59.4 9.1 78 234-313 779-858 (867)
46 cd04887 ACT_MalLac-Enz ACT_Mal 95.7 0.099 2.1E-06 38.7 8.6 62 247-310 2-63 (74)
47 cd04894 ACT_ACR-like_1 ACT dom 95.3 0.1 2.2E-06 39.1 7.0 66 246-311 2-67 (69)
48 PRK00275 glnD PII uridylyl-tra 95.2 0.19 4.2E-06 55.1 12.2 69 243-312 703-777 (895)
49 cd04886 ACT_ThrD-II-like C-ter 95.1 0.17 3.7E-06 36.3 7.9 62 247-310 1-66 (73)
50 PRK03059 PII uridylyl-transfer 95.1 0.16 3.5E-06 55.4 11.0 77 234-312 666-749 (856)
51 PRK05092 PII uridylyl-transfer 94.8 0.25 5.3E-06 54.5 11.4 78 234-312 720-804 (931)
52 KOG4447 Transcription factor T 94.6 0.021 4.6E-07 49.6 2.0 52 143-194 78-131 (173)
53 cd04888 ACT_PheB-BS C-terminal 94.5 0.22 4.8E-06 36.8 7.3 64 246-310 2-65 (76)
54 PRK04435 hypothetical protein; 94.4 0.3 6.5E-06 42.2 9.0 70 240-310 65-134 (147)
55 cd04880 ACT_AAAH-PDT-like ACT 94.4 0.35 7.6E-06 36.2 8.4 63 248-310 3-66 (75)
56 cd02116 ACT ACT domains are co 94.4 0.29 6.3E-06 31.9 7.2 34 247-280 1-34 (60)
57 PRK04374 PII uridylyl-transfer 94.4 0.39 8.4E-06 52.7 11.7 71 242-313 688-760 (869)
58 cd04881 ACT_HSDH-Hom ACT_HSDH_ 94.0 0.27 5.8E-06 35.9 6.9 63 245-309 1-64 (79)
59 cd04876 ACT_RelA-SpoT ACT dom 94.0 0.44 9.6E-06 32.8 7.6 61 247-309 1-61 (71)
60 cd04874 ACT_Af1403 N-terminal 93.9 0.56 1.2E-05 33.6 8.3 60 246-309 2-61 (72)
61 cd04884 ACT_CBS C-terminal ACT 93.8 0.43 9.3E-06 35.4 7.6 63 247-311 2-66 (72)
62 KOG3910 Helix loop helix trans 93.5 0.044 9.5E-07 55.6 2.2 57 142-198 525-585 (632)
63 cd04905 ACT_CM-PDT C-terminal 93.5 0.87 1.9E-05 34.6 9.0 65 246-310 3-68 (80)
64 PRK08577 hypothetical protein; 93.4 0.95 2.1E-05 38.2 10.0 67 243-310 55-122 (136)
65 cd04877 ACT_TyrR N-terminal AC 93.3 0.37 8.1E-06 36.1 6.6 58 246-309 2-59 (74)
66 KOG3560 Aryl-hydrocarbon recep 92.6 0.12 2.6E-06 53.2 3.8 39 151-189 33-75 (712)
67 cd04878 ACT_AHAS N-terminal AC 92.6 1.1 2.3E-05 31.9 8.0 61 246-309 2-63 (72)
68 cd04931 ACT_PAH ACT domain of 92.4 1.1 2.3E-05 35.7 8.3 68 245-312 15-82 (90)
69 PRK13010 purU formyltetrahydro 92.4 0.68 1.5E-05 44.4 8.5 69 244-314 9-80 (289)
70 PRK13011 formyltetrahydrofolat 91.7 1.7 3.7E-05 41.6 10.5 70 244-315 7-77 (286)
71 PRK06027 purU formyltetrahydro 91.7 1.5 3.3E-05 41.9 10.1 70 243-314 5-76 (286)
72 TIGR00655 PurU formyltetrahydr 91.3 1.9 4E-05 41.2 10.2 63 246-310 2-66 (280)
73 cd04879 ACT_3PGDH-like ACT_3PG 91.1 1.7 3.7E-05 30.7 7.7 59 247-310 2-61 (71)
74 cd04882 ACT_Bt0572_2 C-termina 91.1 1.2 2.6E-05 31.6 6.8 56 247-310 2-59 (65)
75 COG2844 GlnD UTP:GlnB (protein 90.6 1.4 3E-05 47.8 9.3 77 235-312 675-755 (867)
76 cd04903 ACT_LSD C-terminal ACT 90.3 2.5 5.5E-05 29.9 8.0 59 247-310 2-61 (71)
77 cd04908 ACT_Bt0572_1 N-termina 90.2 2.8 6.1E-05 30.5 8.2 37 246-282 3-39 (66)
78 cd04909 ACT_PDH-BS C-terminal 89.8 2.1 4.6E-05 31.0 7.3 35 246-280 3-37 (69)
79 PRK07334 threonine dehydratase 89.6 1.9 4.1E-05 42.9 9.0 67 242-310 324-394 (403)
80 cd04904 ACT_AAAH ACT domain of 89.3 1.5 3.2E-05 33.1 6.3 48 248-295 4-51 (74)
81 PRK11589 gcvR glycine cleavage 88.3 1.4 3E-05 39.8 6.3 65 243-311 7-71 (190)
82 KOG3558 Hypoxia-inducible fact 87.5 0.4 8.7E-06 50.7 2.7 47 144-190 47-97 (768)
83 cd04929 ACT_TPH ACT domain of 87.4 3.6 7.9E-05 31.3 7.3 61 249-310 5-65 (74)
84 KOG3559 Transcriptional regula 87.1 0.58 1.3E-05 46.8 3.4 42 150-191 8-53 (598)
85 cd04883 ACT_AcuB C-terminal AC 86.9 6 0.00013 28.7 8.2 60 246-310 3-63 (72)
86 cd04885 ACT_ThrD-I Tandem C-te 86.6 4 8.7E-05 30.0 7.0 60 248-310 2-61 (68)
87 KOG3898 Transcription factor N 86.4 0.4 8.7E-06 45.2 1.9 53 142-194 71-126 (254)
88 COG4492 PheB ACT domain-contai 85.3 5.3 0.00012 34.4 7.8 67 242-310 70-137 (150)
89 PRK11895 ilvH acetolactate syn 85.0 4.8 0.0001 35.4 7.8 61 246-309 4-65 (161)
90 KOG4395 Transcription factor A 84.7 1.4 2.9E-05 41.6 4.4 54 143-196 174-230 (285)
91 TIGR00119 acolac_sm acetolacta 84.4 6.5 0.00014 34.5 8.3 61 246-309 3-64 (157)
92 cd04889 ACT_PDH-BS-like C-term 81.8 7.4 0.00016 27.0 6.4 35 247-281 1-35 (56)
93 cd04930 ACT_TH ACT domain of t 81.2 6.4 0.00014 32.6 6.7 51 245-295 42-92 (115)
94 COG0788 PurU Formyltetrahydrof 80.6 9.6 0.00021 36.5 8.4 68 243-313 6-76 (287)
95 PRK11092 bifunctional (p)ppGpp 79.9 7.8 0.00017 41.8 8.5 64 244-309 626-689 (702)
96 PRK10872 relA (p)ppGpp synthet 78.9 9.6 0.00021 41.3 8.8 64 245-310 667-731 (743)
97 PRK11589 gcvR glycine cleavage 78.3 18 0.00039 32.6 9.2 69 245-315 96-169 (190)
98 cd04901 ACT_3PGDH C-terminal A 77.6 2.8 6.1E-05 30.1 3.2 57 248-310 3-59 (69)
99 PRK11152 ilvM acetolactate syn 76.4 26 0.00056 27.0 8.3 60 246-309 5-65 (76)
100 TIGR00691 spoT_relA (p)ppGpp s 76.2 12 0.00025 40.3 8.5 64 244-309 610-673 (683)
101 cd04906 ACT_ThrD-I_1 First of 75.8 21 0.00046 27.4 7.9 63 245-310 2-64 (85)
102 cd04902 ACT_3PGDH-xct C-termin 74.8 13 0.00028 26.8 6.2 57 248-310 3-61 (73)
103 PRK08198 threonine dehydratase 74.0 22 0.00048 35.2 9.4 68 241-310 324-395 (404)
104 PRK13562 acetolactate synthase 74.0 20 0.00043 28.4 7.2 62 246-309 4-66 (84)
105 PRK06737 acetolactate synthase 72.4 25 0.00055 27.1 7.4 47 246-292 4-51 (76)
106 COG3830 ACT domain-containing 71.7 9.2 0.0002 30.6 4.9 69 244-314 3-71 (90)
107 PF05088 Bac_GDH: Bacterial NA 71.2 29 0.00064 40.6 10.6 73 243-315 488-564 (1528)
108 TIGR01127 ilvA_1Cterm threonin 70.2 28 0.00061 34.1 9.1 68 241-310 302-373 (380)
109 cd04937 ACT_AKi-DapG-BS_2 ACT 68.5 32 0.0007 24.7 7.0 57 246-312 3-62 (64)
110 PRK06382 threonine dehydratase 68.3 27 0.00058 34.8 8.6 68 241-310 327-398 (406)
111 cd04892 ACT_AK-like_2 ACT doma 66.9 24 0.00051 24.1 5.9 33 246-278 2-37 (65)
112 PF13710 ACT_5: ACT domain; PD 64.3 49 0.0011 24.2 7.2 54 253-309 1-55 (63)
113 COG0317 SpoT Guanosine polypho 63.0 30 0.00065 37.3 8.1 53 244-296 627-679 (701)
114 PRK00227 glnD PII uridylyl-tra 62.8 44 0.00096 36.1 9.4 67 245-313 547-614 (693)
115 cd04922 ACT_AKi-HSDH-ThrA_2 AC 61.7 52 0.0011 23.0 7.6 59 246-312 3-64 (66)
116 PF02120 Flg_hook: Flagellar h 60.7 38 0.00083 25.5 6.4 44 235-278 28-77 (85)
117 CHL00100 ilvH acetohydroxyacid 60.0 56 0.0012 29.1 8.1 64 246-312 4-68 (174)
118 PRK08178 acetolactate synthase 59.5 77 0.0017 25.7 8.1 63 243-309 7-70 (96)
119 cd04907 ACT_ThrD-I_2 Second of 58.7 82 0.0018 24.2 8.1 62 245-310 2-63 (81)
120 KOG4447 Transcription factor T 55.2 9.5 0.00021 33.5 2.3 43 150-192 29-73 (173)
121 TIGR01268 Phe4hydrox_tetr phen 55.2 52 0.0011 33.6 7.9 66 245-310 17-82 (436)
122 PRK11899 prephenate dehydratas 54.3 91 0.002 29.8 9.1 51 245-295 195-245 (279)
123 cd04912 ACT_AKiii-LysC-EC-like 52.9 92 0.002 23.1 7.3 31 246-276 3-36 (75)
124 PRK15385 magnesium transport p 52.7 1.3E+02 0.0027 28.1 9.4 65 243-309 141-210 (225)
125 cd04920 ACT_AKiii-DAPDC_2 ACT 49.8 80 0.0017 22.7 6.3 50 253-312 12-61 (63)
126 KOG3582 Mlx interactors and re 48.9 4.5 9.7E-05 43.2 -0.8 60 142-201 650-714 (856)
127 cd04890 ACT_AK-like_1 ACT doma 48.3 74 0.0016 22.3 5.9 24 253-276 12-35 (62)
128 COG2716 GcvR Glycine cleavage 47.2 68 0.0015 28.8 6.5 69 242-312 90-163 (176)
129 KOG3582 Mlx interactors and re 45.7 8.1 0.00018 41.3 0.5 62 142-206 786-852 (856)
130 cd04923 ACT_AK-LysC-DapG-like_ 45.5 96 0.0021 21.2 6.5 57 246-312 2-61 (63)
131 PRK11898 prephenate dehydratas 45.4 1.2E+02 0.0025 29.0 8.3 51 245-295 197-248 (283)
132 PRK08526 threonine dehydratase 44.6 96 0.0021 31.0 7.9 67 241-309 323-393 (403)
133 COG4747 ACT domain-containing 44.2 52 0.0011 27.9 5.0 38 246-283 5-42 (142)
134 cd04915 ACT_AK-Ectoine_2 ACT d 43.8 95 0.0021 22.6 5.9 51 254-312 14-64 (66)
135 cd04868 ACT_AK-like ACT domain 42.9 95 0.0021 20.3 5.6 24 254-277 13-36 (60)
136 cd04918 ACT_AK1-AT_2 ACT domai 40.7 1.2E+02 0.0027 21.7 6.1 52 253-312 12-63 (65)
137 cd04919 ACT_AK-Hom3_2 ACT doma 40.4 1.3E+02 0.0028 21.1 7.8 32 246-277 3-37 (66)
138 PF13840 ACT_7: ACT domain ; P 39.9 45 0.00098 24.3 3.6 35 242-276 4-42 (65)
139 cd07940 DRE_TIM_IPMS 2-isoprop 39.7 1.1E+02 0.0023 28.6 7.0 39 244-283 189-228 (268)
140 cd04911 ACT_AKiii-YclM-BS_1 AC 38.7 97 0.0021 23.9 5.4 56 252-312 12-67 (76)
141 TIGR01270 Trp_5_monoox tryptop 38.7 1E+02 0.0022 31.8 7.1 65 245-310 32-97 (464)
142 cd04916 ACT_AKiii-YclM-BS_2 AC 37.8 1.4E+02 0.003 20.7 7.7 59 246-312 3-64 (66)
143 cd04932 ACT_AKiii-LysC-EC_1 AC 37.8 1.7E+02 0.0038 21.9 8.3 26 251-276 11-36 (75)
144 PF02344 Myc-LZ: Myc leucine z 37.4 36 0.00078 22.1 2.3 16 152-167 14-29 (32)
145 PF02542 YgbB: YgbB family; I 35.1 96 0.0021 27.3 5.5 45 257-312 76-120 (157)
146 PRK10622 pheA bifunctional cho 35.0 2.5E+02 0.0054 28.1 9.1 47 249-295 302-348 (386)
147 cd07943 DRE_TIM_HOA 4-hydroxy- 34.5 1.2E+02 0.0027 28.1 6.5 38 245-283 186-224 (263)
148 PRK14623 hypothetical protein; 34.4 2E+02 0.0043 23.6 6.9 26 181-206 3-28 (106)
149 PRK00227 glnD PII uridylyl-tra 34.0 64 0.0014 34.9 5.0 60 245-313 632-691 (693)
150 COG0077 PheA Prephenate dehydr 33.8 2.9E+02 0.0062 26.6 8.9 52 245-296 195-246 (279)
151 cd04917 ACT_AKiii-LysC-EC_2 AC 33.6 1.7E+02 0.0037 20.6 7.0 57 246-312 3-62 (64)
152 cd00554 MECDP_synthase MECDP_s 33.1 1.4E+02 0.003 26.2 6.2 46 256-312 74-119 (153)
153 TIGR02079 THD1 threonine dehyd 33.0 4.2E+02 0.009 26.5 10.4 67 241-309 322-389 (409)
154 TIGR01124 ilvA_2Cterm threonin 32.9 2.6E+02 0.0057 28.9 9.1 66 241-310 322-387 (499)
155 cd07937 DRE_TIM_PC_TC_5S Pyruv 32.6 1.1E+02 0.0025 28.7 6.0 38 245-283 193-231 (275)
156 PRK09224 threonine dehydratase 32.5 3E+02 0.0066 28.4 9.6 67 241-310 325-391 (504)
157 PRK14627 hypothetical protein; 32.2 2.3E+02 0.005 22.9 6.9 25 182-206 4-28 (100)
158 cd04921 ACT_AKi-HSDH-ThrA-like 32.2 1.9E+02 0.0042 21.0 6.2 33 246-278 3-38 (80)
159 TIGR00103 DNA_YbaB_EbfC DNA-bi 32.0 2.2E+02 0.0048 22.9 6.8 26 181-206 7-32 (102)
160 COG2061 ACT-domain-containing 30.9 3.3E+02 0.0071 24.2 8.0 49 245-294 6-57 (170)
161 COG3074 Uncharacterized protei 30.6 72 0.0016 24.5 3.4 24 181-204 13-36 (79)
162 PRK14626 hypothetical protein; 30.6 2.4E+02 0.0052 23.2 6.9 51 181-251 7-57 (110)
163 PRK00084 ispF 2-C-methyl-D-ery 30.6 1.5E+02 0.0033 26.1 6.0 45 257-312 78-122 (159)
164 cd04924 ACT_AK-Arch_2 ACT doma 30.0 1.9E+02 0.0041 19.9 7.7 59 246-312 3-64 (66)
165 cd07939 DRE_TIM_NifV Streptomy 29.8 1.6E+02 0.0035 27.3 6.5 53 245-310 183-236 (259)
166 PF06005 DUF904: Protein of un 29.7 89 0.0019 23.8 3.9 23 181-203 13-35 (72)
167 TIGR00151 ispF 2C-methyl-D-ery 29.6 1.6E+02 0.0035 25.8 6.0 46 256-312 74-119 (155)
168 PRK00153 hypothetical protein; 29.5 2.5E+02 0.0054 22.5 6.7 50 181-250 5-54 (104)
169 PRK07431 aspartate kinase; Pro 29.2 2.7E+02 0.0058 29.2 8.6 65 238-312 513-580 (587)
170 PRK14621 hypothetical protein; 29.1 2.6E+02 0.0056 23.1 6.8 26 181-206 6-31 (111)
171 PRK14622 hypothetical protein; 29.1 2.6E+02 0.0056 22.7 6.8 26 181-206 3-28 (103)
172 cd07944 DRE_TIM_HOA_like 4-hyd 29.1 1.4E+02 0.0031 27.9 6.0 39 244-283 183-222 (266)
173 PRK14629 hypothetical protein; 28.4 2.6E+02 0.0057 22.7 6.6 24 184-207 8-31 (99)
174 PRK08210 aspartate kinase I; R 28.1 2.5E+02 0.0055 27.7 7.9 66 237-312 332-400 (403)
175 PRK12483 threonine dehydratase 28.1 4E+02 0.0086 27.8 9.5 65 241-309 342-407 (521)
176 PLN02862 2-C-methyl-D-erythrit 27.6 1.6E+02 0.0036 27.2 5.9 46 256-312 134-179 (216)
177 PF14689 SPOB_a: Sensor_kinase 27.4 1.8E+02 0.0039 21.1 5.1 41 152-199 17-57 (62)
178 cd04891 ACT_AK-LysC-DapG-like_ 27.2 1.9E+02 0.0042 19.1 5.4 26 252-277 9-34 (61)
179 PRK08639 threonine dehydratase 27.0 3.5E+02 0.0075 27.1 8.7 68 241-310 333-401 (420)
180 PRK14624 hypothetical protein; 26.7 3.2E+02 0.0069 22.8 7.0 27 181-207 8-34 (115)
181 PRK00341 hypothetical protein; 26.5 1.9E+02 0.0042 22.8 5.5 63 244-309 17-82 (91)
182 cd04936 ACT_AKii-LysC-BS-like_ 26.3 2.1E+02 0.0046 19.3 6.6 24 253-276 12-35 (63)
183 PRK03762 hypothetical protein; 25.8 3.3E+02 0.0072 22.2 6.8 26 181-206 7-32 (103)
184 cd03174 DRE_TIM_metallolyase D 25.2 1.9E+02 0.0041 26.2 6.0 37 245-282 191-228 (265)
185 cd04898 ACT_ACR-like_4 ACT dom 25.1 1.5E+02 0.0033 23.1 4.3 65 247-312 3-74 (77)
186 PF04455 Saccharop_dh_N: LOR/S 25.1 2.5E+02 0.0055 22.9 6.0 56 254-311 14-71 (103)
187 PHA02568 J baseplate assembly 25.0 4.7E+02 0.01 25.3 8.8 74 241-314 164-242 (300)
188 TIGR01269 Tyr_3_monoox tyrosin 24.7 2.7E+02 0.0057 28.7 7.2 62 246-311 41-107 (457)
189 COG0527 LysC Aspartokinases [A 24.1 4E+02 0.0087 27.3 8.6 67 237-313 376-445 (447)
190 cd04934 ACT_AK-Hom3_1 CT domai 24.1 3.1E+02 0.0067 20.4 6.3 24 253-276 13-36 (73)
191 PLN02551 aspartokinase 24.0 4.6E+02 0.01 27.3 9.2 68 238-313 439-508 (521)
192 TIGR00656 asp_kin_monofn aspar 23.9 3.5E+02 0.0076 26.6 8.0 65 238-312 331-398 (401)
193 TIGR02090 LEU1_arch isopropylm 23.6 2.6E+02 0.0057 27.4 7.0 38 245-283 185-223 (363)
194 PRK14625 hypothetical protein; 23.1 3.8E+02 0.0083 22.1 6.7 50 181-250 4-53 (109)
195 PRK14637 hypothetical protein; 23.0 4.1E+02 0.0089 23.0 7.3 50 253-306 6-56 (151)
196 PRK07431 aspartate kinase; Pro 22.9 3.2E+02 0.0069 28.6 7.8 66 237-312 341-409 (587)
197 TIGR00656 asp_kin_monofn aspar 22.4 5E+02 0.011 25.5 8.8 43 235-277 250-296 (401)
198 cd07947 DRE_TIM_Re_CS Clostrid 22.3 2.3E+02 0.0051 26.9 6.1 38 245-283 204-242 (279)
199 cd04913 ACT_AKii-LysC-BS-like_ 22.3 2.8E+02 0.006 19.3 5.5 25 251-275 9-33 (75)
200 PRK09977 putative Mg(2+) trans 21.9 4.7E+02 0.01 24.0 7.9 64 242-310 142-205 (215)
201 COG0440 IlvH Acetolactate synt 21.7 3.4E+02 0.0074 24.1 6.5 63 246-311 6-69 (163)
202 PF05687 DUF822: Plant protein 21.6 91 0.002 27.2 2.8 27 142-168 10-36 (150)
203 PRK14646 hypothetical protein; 21.4 5.4E+02 0.012 22.3 8.6 43 260-304 12-55 (155)
204 PF01545 Cation_efflux: Cation 21.4 6.3E+02 0.014 23.0 9.1 58 257-314 206-266 (284)
205 KOG2391 Vacuolar sorting prote 21.4 7.1E+02 0.015 24.8 9.2 26 20-46 114-140 (365)
206 PRK00907 hypothetical protein; 21.3 3.7E+02 0.0081 21.4 6.2 63 243-308 16-82 (92)
207 PLN02705 beta-amylase 20.9 1.3E+02 0.0028 32.2 4.3 28 141-168 82-109 (681)
208 PF09849 DUF2076: Uncharacteri 20.8 2.4E+02 0.0053 26.6 5.8 17 188-204 57-73 (247)
209 smart00596 PRE_C2HC PRE_C2HC d 20.8 2.4E+02 0.0053 21.5 4.7 24 259-282 2-25 (69)
210 TIGR02865 spore_II_E stage II 20.6 2.8E+02 0.0062 30.3 7.1 59 256-314 465-523 (764)
211 PRK15422 septal ring assembly 20.6 1.6E+02 0.0034 23.1 3.7 24 181-204 13-36 (79)
212 cd04933 ACT_AK1-AT_1 ACT domai 20.3 4E+02 0.0087 20.3 8.2 31 246-276 3-36 (78)
213 PRK08841 aspartate kinase; Val 20.1 3.5E+02 0.0076 27.0 7.2 65 238-312 312-376 (392)
214 PRK06635 aspartate kinase; Rev 20.0 4.6E+02 0.01 25.7 8.0 39 238-276 334-375 (404)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.38 E-value=5.3e-13 Score=97.05 Aligned_cols=53 Identities=40% Similarity=0.710 Sum_probs=50.3
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhcccCCC---CCCCcchHHHHHHHHHHHHHHHH
Q 021208 143 NTQDHIIAERKRREKLSQRFIALSAIVPGL---KKMDKASVLGDAIKYLKQLQEKV 195 (316)
Q Consensus 143 ~~~~h~~~Er~RR~~in~~~~~LrslvP~~---~k~dKasiL~~Ai~YIk~Lq~~v 195 (316)
.+..|+..||+||++||..|..|+++||.. .|+||++||..||+||+.|+.++
T Consensus 4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999988 89999999999999999999876
No 2
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.35 E-value=7.1e-13 Score=95.62 Aligned_cols=49 Identities=43% Similarity=0.700 Sum_probs=46.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcccCCC-----CCCCcchHHHHHHHHHHHHH
Q 021208 144 TQDHIIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 192 (316)
Q Consensus 144 ~~~h~~~Er~RR~~in~~~~~LrslvP~~-----~k~dKasiL~~Ai~YIk~Lq 192 (316)
+..|+..||+||++||+.|..|+.+||.. .|++|++||..||+||++||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 56899999999999999999999999976 78999999999999999997
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.31 E-value=3.1e-12 Score=91.17 Aligned_cols=49 Identities=41% Similarity=0.645 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCC---CCCCCcchHHHHHHHHHHHHHHHHH
Q 021208 148 IIAERKRREKLSQRFIALSAIVPG---LKKMDKASVLGDAIKYLKQLQEKVK 196 (316)
Q Consensus 148 ~~~Er~RR~~in~~~~~LrslvP~---~~k~dKasiL~~Ai~YIk~Lq~~v~ 196 (316)
+..||+||++||+.|..|+++||. ..|++|++||..||+||+.|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999995 5799999999999999999999875
No 4
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.89 E-value=9.4e-10 Score=97.34 Aligned_cols=65 Identities=29% Similarity=0.486 Sum_probs=57.2
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHhcccCCC-------CCCCcchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021208 140 RLSNTQDHIIAERKRREKLSQRFIALSAIVPGL-------KKMDKASVLGDAIKYLKQLQEKVKILEEQANK 204 (316)
Q Consensus 140 ~~~~~~~h~~~Er~RR~~in~~~~~LrslvP~~-------~k~dKasiL~~Ai~YIk~Lq~~v~~L~~~~~~ 204 (316)
+..++..|..+||+||+.||..+..|+.|||.+ .|..||.||..+|+||.+|..++..-+++...
T Consensus 59 k~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~ 130 (229)
T KOG1319|consen 59 KDRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVST 130 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999999999999999999999965 36779999999999999999998888876654
No 5
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.85 E-value=3.6e-09 Score=104.23 Aligned_cols=59 Identities=27% Similarity=0.528 Sum_probs=52.9
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHhcccCCC----CCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 021208 142 SNTQDHIIAERKRREKLSQRFIALSAIVPGL----KKMDKASVLGDAIKYLKQLQEKVKILEE 200 (316)
Q Consensus 142 ~~~~~h~~~Er~RR~~in~~~~~LrslvP~~----~k~dKasiL~~Ai~YIk~Lq~~v~~L~~ 200 (316)
.+|..|+++|||||++||++|..|..|||.+ .+..|..||..+++||+.||+..++..+
T Consensus 232 ~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E 294 (411)
T KOG1318|consen 232 RKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARE 294 (411)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999987 4667999999999999999998875443
No 6
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.35 E-value=5.1e-06 Score=63.64 Aligned_cols=67 Identities=16% Similarity=0.327 Sum_probs=57.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHHH
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQ 313 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~ 313 (316)
+|+|.+.+++|+|.+|.++|..+||+|..|.|++.|+++.+++.+ .-.++..++-.+..+.|+.+|.
T Consensus 3 viev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV-~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHV-TDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred EEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEE-ECCCCCCCCCHHHHHHHHHHhc
Confidence 689999999999999999999999999999999999999997765 4445666666677778887774
No 7
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.34 E-value=5.3e-06 Score=64.03 Aligned_cols=67 Identities=12% Similarity=0.259 Sum_probs=53.9
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHHH
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQ 313 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~ 313 (316)
+|.|.|++++|||.+|..+|-.+|+.|.+|.|++.|+++.+.+.+ .-.++..++-++..+.|+++|.
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV-~d~~g~kl~~~~~~~~l~~~L~ 69 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYI-RHKDGRTLSTEGERQRVIKCLE 69 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEE-EcCCCCccCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999997765 4445566654444444444443
No 8
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.34 E-value=4.1e-06 Score=64.31 Aligned_cols=71 Identities=23% Similarity=0.337 Sum_probs=54.7
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEE-eCCeEEEEEEEEEecCCccc---CHHHHHHHHHHHHHhhC
Q 021208 245 VLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMT-FGSSVLDVTIIAQMDVEFNM---TVKDLVKNLHSAFQLFA 316 (316)
Q Consensus 245 v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~-~g~~~l~~ti~aq~~~~~~l---s~~eL~~~L~~al~~~~ 316 (316)
++|+|.|+.++|+|.+|..+|..+||.|+.|.+.+ .++.+++.+++... ++... ..++|.+.|+.+|.+-|
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~-~~~~~~~~~~~~l~~~L~~~L~~~~ 75 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA-RELLHTKKRREETYDYLRAVLGDSM 75 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC-CCCCCCHHHHHHHHHHHHHHHchhc
Confidence 47899999999999999999999999999999996 89999997665332 22211 23446777777766544
No 9
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.33 E-value=5.6e-06 Score=63.91 Aligned_cols=66 Identities=15% Similarity=0.255 Sum_probs=53.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEE--EeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHHH
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVM--TFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQ 313 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs--~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~ 313 (316)
+|.|.|.+|+|+|.+|.++|..+|++|..|.|+ +.|+++.+++.+ .. ++..++-.+-.+.|+++|.
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~-~g~kl~d~~~~~~L~~~L~ 69 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QS-DGKKIMDPKKQAALCARLR 69 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eC-CCCccCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999 999999998876 43 3434554444455555544
No 10
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.24 E-value=5.9e-07 Score=84.06 Aligned_cols=56 Identities=25% Similarity=0.416 Sum_probs=49.3
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHhcccCCC--------CCCCcchHHHHHHHHHHHHHHHHHH
Q 021208 142 SNTQDHIIAERKRREKLSQRFIALSAIVPGL--------KKMDKASVLGDAIKYLKQLQEKVKI 197 (316)
Q Consensus 142 ~~~~~h~~~Er~RR~~in~~~~~LrslvP~~--------~k~dKasiL~~Ai~YIk~Lq~~v~~ 197 (316)
.++..|-+.||+||++||+.+..|+.|||.. .|++||.||.-|++|++.||.....
T Consensus 31 ~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 31 YRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 4677899999999999999999999999932 6788999999999999999976443
No 11
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.21 E-value=2.6e-05 Score=58.99 Aligned_cols=69 Identities=14% Similarity=0.281 Sum_probs=55.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEe-CCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHhh
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTF-GSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQLF 315 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~-g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~~~ 315 (316)
.|.|.|++++|+|.+|..+|..+||+|+.|.+.+. ++.+++++.+ .-.++..+...+..++|++.|.+.
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v-~~~~~~~~~~~~~~~~l~~~L~~~ 72 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVV-LDPDGEPIGERERLARIREALEDA 72 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEE-ECCCCCCCChHHHHHHHHHHHHhh
Confidence 57899999999999999999999999999999888 6889986654 444555555566667777777664
No 12
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.18 E-value=6.3e-06 Score=76.29 Aligned_cols=64 Identities=25% Similarity=0.366 Sum_probs=53.7
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHhcccCCC--CCCC-cchHHHHHHHHHHHHHHHHHHHHHHHh
Q 021208 140 RLSNTQDHIIAERKRREKLSQRFIALSAIVPGL--KKMD-KASVLGDAIKYLKQLQEKVKILEEQAN 203 (316)
Q Consensus 140 ~~~~~~~h~~~Er~RR~~in~~~~~LrslvP~~--~k~d-KasiL~~Ai~YIk~Lq~~v~~L~~~~~ 203 (316)
....+..|+.-||+||+.|++.|..|+.+||.. .+.. .++||..|+.||+.|+.+........+
T Consensus 56 ~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e 122 (232)
T KOG2483|consen 56 AASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIE 122 (232)
T ss_pred CCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHH
Confidence 345788999999999999999999999999976 3333 689999999999999988777665443
No 13
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.18 E-value=1.5e-06 Score=92.09 Aligned_cols=52 Identities=29% Similarity=0.469 Sum_probs=48.7
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhcccCCC----CCCCcchHHHHHHHHHHHHHHH
Q 021208 143 NTQDHIIAERKRREKLSQRFIALSAIVPGL----KKMDKASVLGDAIKYLKQLQEK 194 (316)
Q Consensus 143 ~~~~h~~~Er~RR~~in~~~~~LrslvP~~----~k~dKasiL~~Ai~YIk~Lq~~ 194 (316)
.+.+|+.+|||||+++|..+.+|.+|||.+ -|+||.+||..||.+|+.+++.
T Consensus 20 ~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 20 KRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 478899999999999999999999999986 5999999999999999999885
No 14
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.12 E-value=3.8e-05 Score=58.50 Aligned_cols=69 Identities=13% Similarity=0.211 Sum_probs=52.2
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHh
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQL 314 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~~ 314 (316)
+|.|.++.++|+|.+|..+|..+|+.|+.|.+.+.|+.+++++.+...+++..+...+-.++|+++|.+
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~ 70 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDN 70 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999986654332213334444444555555544
No 15
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.99 E-value=4.5e-06 Score=89.02 Aligned_cols=62 Identities=31% Similarity=0.530 Sum_probs=57.2
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHhcccCCC-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 021208 142 SNTQDHIIAERKRREKLSQRFIALSAIVPGL-KKMDKASVLGDAIKYLKQLQEKVKILEEQAN 203 (316)
Q Consensus 142 ~~~~~h~~~Er~RR~~in~~~~~LrslvP~~-~k~dKasiL~~Ai~YIk~Lq~~v~~L~~~~~ 203 (316)
.+|.+||++|||.|-.||+++..|+.+||+. .|..|..+|..||+||++|+...+.|+.+.+
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~ 337 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENA 337 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhh
Confidence 6799999999999999999999999999987 8999999999999999999998888876544
No 16
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.82 E-value=0.00032 Score=51.71 Aligned_cols=68 Identities=13% Similarity=0.227 Sum_probs=55.2
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHhh
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQLF 315 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~~~ 315 (316)
.|.|.++.++|+|.+|+.+|.++|+.|+++.+.+.++.+++ +++++-.++.... .+..+.|+++|.+.
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~-~f~i~~~~~~~~~-~~~~~~i~~~l~~~ 69 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAED-VFYVTDADGQPLD-PERQEALRAALGEA 69 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEE-EEEEECCCCCcCC-HHHHHHHHHHHHhh
Confidence 57899999999999999999999999999999998887775 4666655555544 35677788887654
No 17
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.66 E-value=8.9e-05 Score=68.81 Aligned_cols=61 Identities=21% Similarity=0.416 Sum_probs=51.8
Q ss_pred CcchhhHHHHHHHHHHHHHHHHH-hcccCCC-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 021208 143 NTQDHIIAERKRREKLSQRFIAL-SAIVPGL-KKMDKASVLGDAIKYLKQLQEKVKILEEQAN 203 (316)
Q Consensus 143 ~~~~h~~~Er~RR~~in~~~~~L-rslvP~~-~k~dKasiL~~Ai~YIk~Lq~~v~~L~~~~~ 203 (316)
+|.+-.+.||+|=.|+|+.|.+| |.-.++. ...-|+.||..||+||..||.-++++.++..
T Consensus 118 RRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~ 180 (284)
T KOG3960|consen 118 RRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEK 180 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 56677899999999999999999 5556766 6778999999999999999998888876443
No 18
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.47 E-value=0.0014 Score=49.71 Aligned_cols=64 Identities=11% Similarity=0.190 Sum_probs=50.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEe-CCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTF-GSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~-g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
.|-|.|+.++|+|.+|..+|..+||.|+.|.+.+. ++.+++.+++...+. =...+|-++|+.+|
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~---~~~~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKR---GETAALGHALQKEI 67 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCc---cchHHHHHHHHHhh
Confidence 46788999999999999999999999999999865 677887554433322 25667888888776
No 19
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.46 E-value=8.9e-05 Score=70.42 Aligned_cols=57 Identities=26% Similarity=0.411 Sum_probs=49.4
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhcccCCC--CCCCcchHHHHHHHHHHHHHHHHHHHH
Q 021208 143 NTQDHIIAERKRREKLSQRFIALSAIVPGL--KKMDKASVLGDAIKYLKQLQEKVKILE 199 (316)
Q Consensus 143 ~~~~h~~~Er~RR~~in~~~~~LrslvP~~--~k~dKasiL~~Ai~YIk~Lq~~v~~L~ 199 (316)
+|.--|.-||+|-.-||..|..||+|+|.- .|..||.||+.+.+||.+|+.+.-+|-
T Consensus 60 RReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll 118 (373)
T KOG0561|consen 60 RREIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTELL 118 (373)
T ss_pred HHHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccccc
Confidence 345556779999999999999999999974 899999999999999999988765553
No 20
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.41 E-value=0.00015 Score=66.82 Aligned_cols=61 Identities=26% Similarity=0.371 Sum_probs=52.8
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHhcccCC----CCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 021208 141 LSNTQDHIIAERKRREKLSQRFIALSAIVPG----LKKMDKASVLGDAIKYLKQLQEKVKILEEQ 201 (316)
Q Consensus 141 ~~~~~~h~~~Er~RR~~in~~~~~LrslvP~----~~k~dKasiL~~Ai~YIk~Lq~~v~~L~~~ 201 (316)
...+..++..||+|=..+|..|..||.+||. .+|..|..+|.-||.||..|+.-++.-+..
T Consensus 107 ~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~ 171 (228)
T KOG4029|consen 107 SAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAP 171 (228)
T ss_pred hhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccC
Confidence 3567788888999999999999999999984 578899999999999999999876665543
No 21
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.41 E-value=0.0021 Score=48.55 Aligned_cols=66 Identities=12% Similarity=0.199 Sum_probs=51.9
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHHH
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQ 313 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~ 313 (316)
.|.|.++.++|+|.+|..+|.++|+.|+++.+.+.++.+++ +|..+-.++.... .+..++|+++|.
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d-~f~v~~~~~~~~~-~~~~~~l~~~l~ 68 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVN-VFYVTDANGNPVD-PKTIEAVRQEIG 68 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEE-EEEEECCCCCcCC-HHHHHHHHHHhc
Confidence 56788999999999999999999999999999988887765 4555544444453 356677887775
No 22
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.32 E-value=0.0012 Score=71.86 Aligned_cols=71 Identities=15% Similarity=0.294 Sum_probs=57.1
Q ss_pred CCeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHh
Q 021208 242 DKSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQL 314 (316)
Q Consensus 242 ~~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~~ 314 (316)
+.-.+|.|.+.+++|+|.+|.++|..+||+|.+|.|+|.|+++.+++++. -.++..++ .+..+.|+++|..
T Consensus 806 ~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~-~~~g~~l~-~~~~~~l~~~L~~ 876 (884)
T PRK05007 806 DRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILA-TADRRALN-EELQQELRQRLTE 876 (884)
T ss_pred CCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEE-cCCCCcCC-HHHHHHHHHHHHH
Confidence 44579999999999999999999999999999999999999999987664 34555666 4445555555543
No 23
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.31 E-value=0.0046 Score=44.99 Aligned_cols=68 Identities=16% Similarity=0.236 Sum_probs=52.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHhh
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQLF 315 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~~~ 315 (316)
.|.|.|+.++|++.+|+.+|.++|+.|..+.+.+.++... ..+.+.-+++...+ ++-.+.|++.|...
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~~~~~l~~~l~~~ 69 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERAL-DVFYVTDSDGRPLD-PERIARLEEALEDA 69 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEE-EEEEEECCCCCcCC-HHHHHHHHHHHHhh
Confidence 4778999999999999999999999999999988877554 45666655544433 36666777777653
No 24
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.15 E-value=0.001 Score=52.22 Aligned_cols=51 Identities=27% Similarity=0.517 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhcccCCC------CCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021208 155 REKLSQRFIALSAIVPGL------KKMDKASVLGDAIKYLKQLQEKVKILEEQANKK 205 (316)
Q Consensus 155 R~~in~~~~~LrslvP~~------~k~dKasiL~~Ai~YIk~Lq~~v~~L~~~~~~~ 205 (316)
-+.|++.+..|++|+|.. .|..-+-||.|+..||+.|+.+|..|.+.+...
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~L 75 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSEL 75 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999964 233445589999999999999999999977654
No 25
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.11 E-value=0.0075 Score=45.97 Aligned_cols=66 Identities=12% Similarity=0.226 Sum_probs=51.0
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHHH
Q 021208 244 SVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQ 313 (316)
Q Consensus 244 ~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~ 313 (316)
.++|.+.+++++|++..|..+|.++|..+++++..+.++.+. ..+.+..+. -+.++|...|.....
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~-~~~~v~~~~---~~~~~l~~~L~~l~~ 67 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFT-LIMLVSIPE---DSLERLESALEELAE 67 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEE-EEEEEEESH---HHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEE-EEEEEEeCc---ccHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999866 556677662 255666666666543
No 26
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=97.01 E-value=0.0062 Score=66.60 Aligned_cols=79 Identities=15% Similarity=0.230 Sum_probs=59.7
Q ss_pred CeeEEEE--eCCeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCH----HHHHHH
Q 021208 234 PEIEARF--CDKSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTV----KDLVKN 307 (316)
Q Consensus 234 p~Vev~v--~~~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~----~eL~~~ 307 (316)
|.|.+.. .++-..|.|.+..++|+|.+|..+|..+||+|+.|.|.|.|+++++++++ .-.++..++. ++|.+.
T Consensus 802 ~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V-~d~~g~~l~~~~~~~~l~~~ 880 (895)
T PRK00275 802 TQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFI-TDADNQPLSDPQLCSRLQDA 880 (895)
T ss_pred CEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEE-ECCCCCCCCCHHHHHHHHHH
Confidence 4555443 23457899999999999999999999999999999999999999997655 4334444433 346666
Q ss_pred HHHHHH
Q 021208 308 LHSAFQ 313 (316)
Q Consensus 308 L~~al~ 313 (316)
|..+|.
T Consensus 881 L~~~L~ 886 (895)
T PRK00275 881 ICEQLD 886 (895)
T ss_pred HHHHHh
Confidence 666654
No 27
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.91 E-value=0.014 Score=44.56 Aligned_cols=66 Identities=12% Similarity=0.258 Sum_probs=52.5
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHh
Q 021208 245 VLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQL 314 (316)
Q Consensus 245 v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~~ 314 (316)
+.|.+.|++++|++.+|-+.|.++|..++.++....++.++ ..++...+. .+.++|.+.|......
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~-m~~~~~~~~---~~~~~l~~~l~~~~~~ 67 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFA-LTMLVEGSW---DAIAKLEAALPGLARR 67 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEE-EEEEEEecc---ccHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999988888765 344555542 4677888777765433
No 28
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=96.87 E-value=0.0061 Score=66.36 Aligned_cols=71 Identities=17% Similarity=0.315 Sum_probs=57.2
Q ss_pred CCeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHh
Q 021208 242 DKSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQL 314 (316)
Q Consensus 242 ~~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~~ 314 (316)
+.-.+|.|.+.+++|+|.+|.++|.++|++|..|.|+|.|+++.+++++.. .++..++-++. +.|+++|..
T Consensus 781 ~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~-~~g~~l~~~~~-~~l~~~L~~ 851 (854)
T PRK01759 781 QEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTN-QQGQALDEEER-KALKSRLLS 851 (854)
T ss_pred CCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEEC-CCCCcCChHHH-HHHHHHHHH
Confidence 345799999999999999999999999999999999999999999876643 44455664444 666666554
No 29
>PRK04374 PII uridylyl-transferase; Provisional
Probab=96.84 E-value=0.011 Score=64.41 Aligned_cols=79 Identities=19% Similarity=0.267 Sum_probs=58.8
Q ss_pred CeeEEEE--eCCeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHH
Q 021208 234 PEIEARF--CDKSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSA 311 (316)
Q Consensus 234 p~Vev~v--~~~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~a 311 (316)
|.|.+.. .++-..|.|.+..++|+|.+|..+|..+|++|+.|.|.|.|+++.+++.+ +-.++..++..+. +.|+++
T Consensus 784 ~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V-~d~~g~~~~~~~~-~~l~~~ 861 (869)
T PRK04374 784 PRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQI-TDEHDRPLSESAR-QALRDA 861 (869)
T ss_pred CeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEE-ECCCCCcCChHHH-HHHHHH
Confidence 4555543 23457899999999999999999999999999999999999999997655 4334444544443 555555
Q ss_pred HHh
Q 021208 312 FQL 314 (316)
Q Consensus 312 l~~ 314 (316)
|..
T Consensus 862 L~~ 864 (869)
T PRK04374 862 LCA 864 (869)
T ss_pred HHH
Confidence 543
No 30
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=96.82 E-value=0.011 Score=42.53 Aligned_cols=61 Identities=11% Similarity=0.189 Sum_probs=46.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCC--eEEEEEEEEEecCCcccCHHHHHHHHHHH
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGS--SVLDVTIIAQMDVEFNMTVKDLVKNLHSA 311 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~--~~l~~ti~aq~~~~~~ls~~eL~~~L~~a 311 (316)
.|.|.|++++|+|.+|...|-++|+.|..+.+.+.++ ..+.++ ... .....+.+++.|+++
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~l~~~ 64 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIV--IVV---DEEDLEKLLEELEAL 64 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEE--EEE---EGHGHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEE--EEC---CCCCHHHHHHHHHcc
Confidence 5789999999999999999999999999999998877 222221 122 123566777777764
No 31
>PRK05092 PII uridylyl-transferase; Provisional
Probab=96.74 E-value=0.013 Score=64.34 Aligned_cols=79 Identities=16% Similarity=0.317 Sum_probs=57.6
Q ss_pred CeeEEEE--eCCeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHH
Q 021208 234 PEIEARF--CDKSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSA 311 (316)
Q Consensus 234 p~Vev~v--~~~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~a 311 (316)
|.|.+.- .+....|.|.|.+++|+|.+|..+|..+|++|..|.|.+.|+++.+++. +.-.++..+...+..+.|+++
T Consensus 831 ~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~-v~d~~g~~i~~~~~~~~l~~~ 909 (931)
T PRK05092 831 PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFY-VTDLFGLKITNEARQAAIRRA 909 (931)
T ss_pred CEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEE-EeCCCCCcCCCHHHHHHHHHH
Confidence 4454432 2345789999999999999999999999999999999999999998654 454445445433334444444
Q ss_pred HH
Q 021208 312 FQ 313 (316)
Q Consensus 312 l~ 313 (316)
|.
T Consensus 910 L~ 911 (931)
T PRK05092 910 LL 911 (931)
T ss_pred HH
Confidence 43
No 32
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.59 E-value=0.017 Score=62.33 Aligned_cols=68 Identities=18% Similarity=0.265 Sum_probs=56.5
Q ss_pred CeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHHH
Q 021208 243 KSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQ 313 (316)
Q Consensus 243 ~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~ 313 (316)
+-..|.|.+..++|+|.+|..+|..+|++|++|.|.+.|+.+++++. +.-.++..++- + .+.|+++|.
T Consensus 706 ~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~-V~d~~g~~~~~-~-~~~l~~~L~ 773 (774)
T PRK03381 706 DATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFY-VTGAAGGPLAD-A-RAAVEQAVL 773 (774)
T ss_pred CeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEE-EECCCCCcCch-H-HHHHHHHhh
Confidence 34789999999999999999999999999999999999999999765 45455555553 3 778888774
No 33
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.54 E-value=0.017 Score=44.97 Aligned_cols=68 Identities=15% Similarity=0.276 Sum_probs=53.2
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHh
Q 021208 245 VLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQL 314 (316)
Q Consensus 245 v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~~ 314 (316)
+.|.+.|++++|++.+|.+.|-.+|+.+++.+..+.++.+. ..+.+..+. ...++++|.+.|......
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~-~~~~v~~~~-~~~~~~~L~~~l~~l~~~ 69 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFT-MIMIVDISE-SNLDFAELQEELEELGKE 69 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccE-EEEEEEeCC-CCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999887766543 455555542 246788888888775543
No 34
>PRK00194 hypothetical protein; Validated
Probab=96.41 E-value=0.024 Score=44.17 Aligned_cols=67 Identities=10% Similarity=0.228 Sum_probs=51.9
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 244 SVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 244 ~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
.+.|.|.|++++|++.+|...|-++|+.|++.+..+.++.+. +.+.+..+. ...+.++|.+.|...-
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~-~~~~v~~~~-~~~~~~~l~~~l~~l~ 69 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFT-MIMLVDISE-SKKDFAELKEELEELG 69 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeE-EEEEEEecC-CCCCHHHHHHHHHHHH
Confidence 568899999999999999999999999999999877666443 455555543 2356778887776643
No 35
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.41 E-value=0.022 Score=62.00 Aligned_cols=70 Identities=20% Similarity=0.331 Sum_probs=57.4
Q ss_pred CeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHh
Q 021208 243 KSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQL 314 (316)
Q Consensus 243 ~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~~ 314 (316)
+-.+|.|.|.+++|+|.+|.++|..+|++|.++.+.+.|+++.+++ .++...+..++- +..+.|+++|..
T Consensus 778 ~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F-~v~~~~g~~~~~-~~~~~l~~~L~~ 847 (850)
T TIGR01693 778 KATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVF-YVTDLFGLKLTD-EEEQRLLEVLAA 847 (850)
T ss_pred CeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEE-EEECCCCCCCCH-HHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999865 456556666664 555666666654
No 36
>PRK03059 PII uridylyl-transferase; Provisional
Probab=96.38 E-value=0.022 Score=62.09 Aligned_cols=69 Identities=17% Similarity=0.279 Sum_probs=53.0
Q ss_pred CCeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHh
Q 021208 242 DKSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQL 314 (316)
Q Consensus 242 ~~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~~ 314 (316)
++-..|.|.+.+++|+|.+|..+|..+||+|+.|.|.|.|+.+.+++++ . +.. ....+-.++|+++|..
T Consensus 784 ~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V-~-~~~--~~~~~~~~~l~~~L~~ 852 (856)
T PRK03059 784 GQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLI-D-GSG--LSDNRLQIQLETELLD 852 (856)
T ss_pred CCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEE-c-CCC--CCCHHHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999999999997765 2 222 2233444555555443
No 37
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=96.35 E-value=0.06 Score=40.68 Aligned_cols=66 Identities=11% Similarity=0.228 Sum_probs=51.2
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCC-----eEEEEEEEEEecCCcccCHHHHHHHHHHHHHh
Q 021208 247 IRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGS-----SVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQL 314 (316)
Q Consensus 247 I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~-----~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~~ 314 (316)
|.|.|+.++|++.+|-+.|.++|+.|.+.+..+.+. ..+...+.+.++. ..+..+|...|...-..
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~--~~~~~~l~~~l~~l~~~ 72 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA--GTDLDALREELEELCDD 72 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC--CCCHHHHHHHHHHHHHH
Confidence 679999999999999999999999999999987761 2333455555553 45788888888775543
No 38
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.31 E-value=0.045 Score=41.05 Aligned_cols=67 Identities=10% Similarity=0.203 Sum_probs=49.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEE-eCCeEEEEEEEEEecCCc-ccCHHHHHHHHHHHHHh
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMT-FGSSVLDVTIIAQMDVEF-NMTVKDLVKNLHSAFQL 314 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~-~g~~~l~~ti~aq~~~~~-~ls~~eL~~~L~~al~~ 314 (316)
.|.|.|+.++|++.+|.+.|-++|+.++..+..+ .++..+.. .++++-.. ..+.++|.+.|...-..
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~--~~~~~~~~~~~~~~~l~~~l~~l~~~ 69 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFM--RVEFELEGFDLSREALEAAFAPVAAE 69 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEE--EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999998775 23333433 34443322 25788888888775544
No 39
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.31 E-value=0.027 Score=61.26 Aligned_cols=79 Identities=18% Similarity=0.157 Sum_probs=58.2
Q ss_pred CCeeEEEE--eCCeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEE-EeCCeEEEEEEEEEecCCcccCHHH----HH
Q 021208 233 LPEIEARF--CDKSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVM-TFGSSVLDVTIIAQMDVEFNMTVKD----LV 305 (316)
Q Consensus 233 ~p~Vev~v--~~~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs-~~g~~~l~~ti~aq~~~~~~ls~~e----L~ 305 (316)
.|.|.+.- .++...|.|.+.+++|+|.+|..+|..+||+|+.|.|. +.++.++++++ ++-.++..+...+ |.
T Consensus 655 ~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~-V~~~~g~~~~~~~~~~~i~ 733 (850)
T TIGR01693 655 GPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFV-VQDLFGSPPAAERVFQELL 733 (850)
T ss_pred CCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEE-EECCCCCCCCcHHHHHHHH
Confidence 45554422 24556899999999999999999999999999999998 77999998654 4545555554444 55
Q ss_pred HHHHHHH
Q 021208 306 KNLHSAF 312 (316)
Q Consensus 306 ~~L~~al 312 (316)
+.|..+|
T Consensus 734 ~~L~~~L 740 (850)
T TIGR01693 734 QGLVDVL 740 (850)
T ss_pred HHHHHHH
Confidence 5555555
No 40
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.30 E-value=0.039 Score=59.55 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=60.8
Q ss_pred CeeEEEEe-CCeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 234 PEIEARFC-DKSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 234 p~Vev~v~-~~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
|.|.++.. .+.+.|.|.|.+++|+|.+|..+|..+|+.|++|.+.+.++.++++++ +.-.++.....++|.+.|..+|
T Consensus 588 ~~v~~~~~~~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~-V~~~~~~~~~~~~l~~~L~~~L 666 (774)
T PRK03381 588 VHVEIAPADPHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFV-VSPRFGSPPDAALLRQDLRRAL 666 (774)
T ss_pred CEEEEeeCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEE-EECCCCCcchHHHHHHHHHHHH
Confidence 44544332 356789999999999999999999999999999999998888887554 4444444445677888888776
Q ss_pred H
Q 021208 313 Q 313 (316)
Q Consensus 313 ~ 313 (316)
.
T Consensus 667 ~ 667 (774)
T PRK03381 667 D 667 (774)
T ss_pred c
Confidence 4
No 41
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=96.14 E-value=0.033 Score=42.33 Aligned_cols=63 Identities=16% Similarity=0.298 Sum_probs=45.0
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeC-CeEEEEEEEEEecCCcccCHHHHHHHH
Q 021208 244 SVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFG-SSVLDVTIIAQMDVEFNMTVKDLVKNL 308 (316)
Q Consensus 244 ~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g-~~~l~~ti~aq~~~~~~ls~~eL~~~L 308 (316)
.+.|+|.+.+++|+|.+|..+|-+.|+.|.+.++.... +....+++..++.+- --+..|.++|
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~--~~L~~ii~~L 69 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDL--EHLNQIIRKL 69 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSH--HHHHHHHHHH
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCH--HHHHHHHHHH
Confidence 46788999999999999999999999999999998863 555556777777543 2333444444
No 42
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.12 E-value=0.063 Score=40.52 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=52.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHh
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQL 314 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~~ 314 (316)
+|.|.+.+++|++.+|.+.|-++|+.+.+.+..+.++.+. ..+.+.++.+ .+.++|...|......
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~-~~~~v~~p~~--~~~~~l~~~l~~l~~~ 66 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLS-LGILVQIPDS--ADSEALLKDLLFKAHE 66 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeE-EEEEEEcCCC--CCHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999888876533 4555565544 5788888888776543
No 43
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=96.08 E-value=0.049 Score=59.43 Aligned_cols=79 Identities=19% Similarity=0.242 Sum_probs=58.1
Q ss_pred CCeeEEEE--eCCeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEE-eCCeEEEEEEEEEecCCcccCHH---HHHH
Q 021208 233 LPEIEARF--CDKSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMT-FGSSVLDVTIIAQMDVEFNMTVK---DLVK 306 (316)
Q Consensus 233 ~p~Vev~v--~~~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~-~g~~~l~~ti~aq~~~~~~ls~~---eL~~ 306 (316)
.|.|.++- ..+...|.|.|++++|+|.+|..+|..+||+|+.|.|.+ .++.+++++++.. .++..++.+ .|.+
T Consensus 664 ~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d-~~g~~~~~~~~~~l~~ 742 (854)
T PRK01759 664 DLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTE-LNGKLLEFDRRRQLEQ 742 (854)
T ss_pred CCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeC-CCCCCCCHHHHHHHHH
Confidence 45555543 345578999999999999999999999999999999977 7999998765544 455555532 3444
Q ss_pred HHHHHH
Q 021208 307 NLHSAF 312 (316)
Q Consensus 307 ~L~~al 312 (316)
.|..+|
T Consensus 743 ~L~~aL 748 (854)
T PRK01759 743 ALTKAL 748 (854)
T ss_pred HHHHHH
Confidence 444444
No 44
>PRK05007 PII uridylyl-transferase; Provisional
Probab=96.02 E-value=0.056 Score=59.21 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=57.7
Q ss_pred CCeeEEEE--eCCeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCC-eEEEEEEEEEecCCcccCH---HHHHH
Q 021208 233 LPEIEARF--CDKSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGS-SVLDVTIIAQMDVEFNMTV---KDLVK 306 (316)
Q Consensus 233 ~p~Vev~v--~~~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~-~~l~~ti~aq~~~~~~ls~---~eL~~ 306 (316)
.|.|.++. .++...|.|.|++++|+|.+|..+|..+||+|+.|.|.+.++ .+++++++.. .++..++. +.|.+
T Consensus 688 ~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d-~~g~~~~~~~~~~I~~ 766 (884)
T PRK05007 688 KPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLE-PDGSPLSQDRHQVIRK 766 (884)
T ss_pred CCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEEC-CCCCCCCHHHHHHHHH
Confidence 35555543 345679999999999999999999999999999999987755 8998665543 44444443 23555
Q ss_pred HHHHHH
Q 021208 307 NLHSAF 312 (316)
Q Consensus 307 ~L~~al 312 (316)
.|..+|
T Consensus 767 ~L~~aL 772 (884)
T PRK05007 767 ALEQAL 772 (884)
T ss_pred HHHHHH
Confidence 555555
No 45
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.037 Score=59.36 Aligned_cols=78 Identities=19% Similarity=0.327 Sum_probs=59.7
Q ss_pred CeeEEEE--eCCeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHH
Q 021208 234 PEIEARF--CDKSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSA 311 (316)
Q Consensus 234 p~Vev~v--~~~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~a 311 (316)
|.|...- ..+--+|+|.+..++|+|..|..+|..++|++.+|.|+|+|.++-+.+++ +--.+..++. ++.+.|.++
T Consensus 779 p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~v-t~~~~~~l~~-~~~q~l~~~ 856 (867)
T COG2844 779 PRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIV-TDADGQALNA-ELRQSLLQR 856 (867)
T ss_pred CceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEE-eccccccCCH-HHHHHHHHH
Confidence 5555432 33456899999999999999999999999999999999999999997654 4445555544 555555555
Q ss_pred HH
Q 021208 312 FQ 313 (316)
Q Consensus 312 l~ 313 (316)
+.
T Consensus 857 ll 858 (867)
T COG2844 857 LL 858 (867)
T ss_pred HH
Confidence 43
No 46
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.73 E-value=0.099 Score=38.71 Aligned_cols=62 Identities=13% Similarity=0.199 Sum_probs=45.5
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 021208 247 IRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHS 310 (316)
Q Consensus 247 I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~ 310 (316)
|+|.+..++|+|.+|+.+|.+.|..|.+.++.........+.+..++.+. --+..|.++|+.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~~--~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPSE--EHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCCH--HHHHHHHHHHhc
Confidence 68899999999999999999999999998887765444444555555443 234455555543
No 47
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.29 E-value=0.1 Score=39.05 Aligned_cols=66 Identities=18% Similarity=0.178 Sum_probs=50.2
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHH
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSA 311 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~a 311 (316)
.|.|.|+.+.|+-.+|.+.+-+.||.|....+++-|.-.+-++-+..-.....+.-+-|+++|.++
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~ 67 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSA 67 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHhc
Confidence 588999999999999999999999999999999999876643333322223345566677777654
No 48
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=95.23 E-value=0.19 Score=55.13 Aligned_cols=69 Identities=19% Similarity=0.284 Sum_probs=51.7
Q ss_pred CeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEE-eCCeEEEEEEEEEecCCccc-C----HHHHHHHHHHHH
Q 021208 243 KSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMT-FGSSVLDVTIIAQMDVEFNM-T----VKDLVKNLHSAF 312 (316)
Q Consensus 243 ~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~-~g~~~l~~ti~aq~~~~~~l-s----~~eL~~~L~~al 312 (316)
+...|.|.|..++|+|.+|..+|..+||+|+.|.|.+ -++.+++.++ +.-.++..+ . .+.|.+.|.++|
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~-V~d~~g~~~~~~~~r~~~i~~~L~~~L 777 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYI-VLDDDGEPIGDNPARIEQIREGLTEAL 777 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEE-EeCCCCCCccchHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999854 5678888654 444444432 2 334556666555
No 49
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.12 E-value=0.17 Score=36.33 Aligned_cols=62 Identities=18% Similarity=0.243 Sum_probs=42.6
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeC----CeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 021208 247 IRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFG----SSVLDVTIIAQMDVEFNMTVKDLVKNLHS 310 (316)
Q Consensus 247 I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g----~~~l~~ti~aq~~~~~~ls~~eL~~~L~~ 310 (316)
+.|.++.++|.|.+|+..|.+.|+.|.+....... .....+.+...+.+ .-.++++.+.|+.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~--~~~l~~l~~~l~~ 66 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRG--AEHIEEIIAALRE 66 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCC--HHHHHHHHHHHHH
Confidence 46788999999999999999999999988776542 23333444445432 2234566666654
No 50
>PRK03059 PII uridylyl-transferase; Provisional
Probab=95.09 E-value=0.16 Score=55.45 Aligned_cols=77 Identities=16% Similarity=0.254 Sum_probs=55.1
Q ss_pred CeeEEEE--eCCeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEE-eCCeEEEEEEEEEecCCcccC----HHHHHH
Q 021208 234 PEIEARF--CDKSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMT-FGSSVLDVTIIAQMDVEFNMT----VKDLVK 306 (316)
Q Consensus 234 p~Vev~v--~~~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~-~g~~~l~~ti~aq~~~~~~ls----~~eL~~ 306 (316)
|-|-++. ..+...|-|.|+.++|+|.+|..+|..+||+|+.|.|.+ -+|.+++.+++ .-.++. .. .+.|.+
T Consensus 666 ~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V-~~~~~~-~~~~~~~~~i~~ 743 (856)
T PRK03059 666 PIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQV-LDPEED-VHYRDIINLVEH 743 (856)
T ss_pred CeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEE-eCCCCC-CChHHHHHHHHH
Confidence 4444443 335678899999999999999999999999999999964 57888986544 433333 33 334555
Q ss_pred HHHHHH
Q 021208 307 NLHSAF 312 (316)
Q Consensus 307 ~L~~al 312 (316)
.|.++|
T Consensus 744 ~l~~~l 749 (856)
T PRK03059 744 ELAERL 749 (856)
T ss_pred HHHHHH
Confidence 555555
No 51
>PRK05092 PII uridylyl-transferase; Provisional
Probab=94.77 E-value=0.25 Score=54.51 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=56.7
Q ss_pred CeeEEEEe--CCeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEE-eCCeEEEEEEEEEecCCcccC----HHHHHH
Q 021208 234 PEIEARFC--DKSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMT-FGSSVLDVTIIAQMDVEFNMT----VKDLVK 306 (316)
Q Consensus 234 p~Vev~v~--~~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~-~g~~~l~~ti~aq~~~~~~ls----~~eL~~ 306 (316)
+.|.++.. .+...|.|.|..++|+|.+|..+|..+|++|+.|.+.+ .++.+++++ .++-.++.... .+.|.+
T Consensus 720 ~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F-~V~~~~g~~~~~~~~~~~l~~ 798 (931)
T PRK05092 720 LATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTF-WIQDAFGRDEDEPRRLARLAK 798 (931)
T ss_pred cEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEE-EEECCCCCCCCCHHHHHHHHH
Confidence 45555443 35678999999999999999999999999999999987 577888744 44444443332 444666
Q ss_pred HHHHHH
Q 021208 307 NLHSAF 312 (316)
Q Consensus 307 ~L~~al 312 (316)
.|..++
T Consensus 799 ~L~~~l 804 (931)
T PRK05092 799 AIEDAL 804 (931)
T ss_pred HHHHHH
Confidence 666555
No 52
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=94.56 E-value=0.021 Score=49.63 Aligned_cols=52 Identities=31% Similarity=0.451 Sum_probs=46.6
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhcccCCC--CCCCcchHHHHHHHHHHHHHHH
Q 021208 143 NTQDHIIAERKRREKLSQRFIALSAIVPGL--KKMDKASVLGDAIKYLKQLQEK 194 (316)
Q Consensus 143 ~~~~h~~~Er~RR~~in~~~~~LrslvP~~--~k~dKasiL~~Ai~YIk~Lq~~ 194 (316)
++.-|++.||+|=..||+.|.+||.++|.. .|..|.--|.-|..||..|-+-
T Consensus 78 qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~v 131 (173)
T KOG4447|consen 78 QRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQV 131 (173)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhc
Confidence 566799999999999999999999999975 7888988999999999988653
No 53
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.50 E-value=0.22 Score=36.81 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=43.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHS 310 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~ 310 (316)
.|.|.+..++|++.+|+..|.+.|+.|...+.....+...++.+.....+. ...+++|.++|++
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~-~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTM-NGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCch-HHHHHHHHHHHhc
Confidence 477899999999999999999999999888765433333334444444332 1245566666653
No 54
>PRK04435 hypothetical protein; Provisional
Probab=94.45 E-value=0.3 Score=42.16 Aligned_cols=70 Identities=16% Similarity=0.190 Sum_probs=51.2
Q ss_pred EeCCeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 021208 240 FCDKSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHS 310 (316)
Q Consensus 240 v~~~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~ 310 (316)
..|+.+.|.+.+.+++|+|.+|+..|.+.|+.|...+.....+....++|.....+. ...+++|..+|++
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~-~~~L~~Li~~L~~ 134 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM-EGDIDELLEKLRN 134 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh-HHHHHHHHHHHHc
Confidence 468889999999999999999999999999999988765433333445555555332 2256677777654
No 55
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=94.44 E-value=0.35 Score=36.16 Aligned_cols=63 Identities=8% Similarity=0.141 Sum_probs=44.4
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCC-cccCHHHHHHHHHH
Q 021208 248 RVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVE-FNMTVKDLVKNLHS 310 (316)
Q Consensus 248 ~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~-~~ls~~eL~~~L~~ 310 (316)
-+..++++|.|.+||+.+..+|+.+.+-...+..+..-.+.|.+.++.. .....+++.+.|+.
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 3455778999999999999999999998777765533344455555443 23456667666655
No 56
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=94.44 E-value=0.29 Score=31.89 Aligned_cols=34 Identities=15% Similarity=0.282 Sum_probs=30.0
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEe
Q 021208 247 IRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTF 280 (316)
Q Consensus 247 I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~ 280 (316)
|.|.|+.++|.+.+|+..|...|+.+........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~ 34 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTS 34 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEc
Confidence 4688899999999999999999999999887654
No 57
>PRK04374 PII uridylyl-transferase; Provisional
Probab=94.37 E-value=0.39 Score=52.70 Aligned_cols=71 Identities=17% Similarity=0.275 Sum_probs=52.4
Q ss_pred CCeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEE-eCCeEEEEEEEEEecCCcc-cCHHHHHHHHHHHHH
Q 021208 242 DKSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMT-FGSSVLDVTIIAQMDVEFN-MTVKDLVKNLHSAFQ 313 (316)
Q Consensus 242 ~~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~-~g~~~l~~ti~aq~~~~~~-ls~~eL~~~L~~al~ 313 (316)
.+...|-|.|..++|+|.+|..+|..+||+|+.|.|.+ -+|.+++.+++ .-.++.. -....|.+.|.++|.
T Consensus 688 ~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V-~~~~~~~~~~~~~i~~~l~~~l~ 760 (869)
T PRK04374 688 NDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEV-LPQDTYADGDPQRLAAALRQVLA 760 (869)
T ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEE-eCCCCCChHHHHHHHHHHHHHHc
Confidence 35578899999999999999999999999999999987 57888986554 4333321 123345566655553
No 58
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.03 E-value=0.27 Score=35.86 Aligned_cols=63 Identities=11% Similarity=0.226 Sum_probs=42.8
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCC-eEEEEEEEEEecCCcccCHHHHHHHHH
Q 021208 245 VLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGS-SVLDVTIIAQMDVEFNMTVKDLVKNLH 309 (316)
Q Consensus 245 v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~-~~l~~ti~aq~~~~~~ls~~eL~~~L~ 309 (316)
++|+|.+.+++|++.+|+..|.+.|+.+.+....+..+ ....+.+.....+ .-.++++..+|+
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~i~~L~ 64 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETS--EAALNAALAEIE 64 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCC--HHHHHHHHHHHH
Confidence 36899999999999999999999999999888765532 3222333333222 233445555555
No 59
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=93.97 E-value=0.44 Score=32.79 Aligned_cols=61 Identities=15% Similarity=0.285 Sum_probs=41.2
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHH
Q 021208 247 IRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLH 309 (316)
Q Consensus 247 I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~ 309 (316)
|+|.+.+++|.+.+|+..|.++++.+.+..+...++....+.+.....+. ..+..+.+.|+
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ 61 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRDL--EHLARIMRKLR 61 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECCH--HHHHHHHHHHh
Confidence 46889999999999999999999999998887655333323344443332 23444554443
No 60
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.93 E-value=0.56 Score=33.61 Aligned_cols=60 Identities=12% Similarity=0.221 Sum_probs=41.9
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHH
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLH 309 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~ 309 (316)
.|.|.+..++|.+.+|+..|.++++.|.+....+.++....+++ .+++. -.+.++.+.|+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i--~~~~~--~~~~~~~~~L~ 61 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYM--ELEGV--GDIEELVEELR 61 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEE--EEecc--ccHHHHHHHHh
Confidence 47789999999999999999999999998877665333333333 33332 24556666554
No 61
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.79 E-value=0.43 Score=35.40 Aligned_cols=63 Identities=13% Similarity=0.157 Sum_probs=43.9
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEe--CCeEEEEEEEEEecCCcccCHHHHHHHHHHH
Q 021208 247 IRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTF--GSSVLDVTIIAQMDVEFNMTVKDLVKNLHSA 311 (316)
Q Consensus 247 I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~--g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~a 311 (316)
+.|.-+.++|.|.+++..|.++|..|++...... +.....+.|...++... ..+.|.+.|+..
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~--~~~~i~~~L~~~ 66 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRS--KENELIEELKAK 66 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecch--HHHHHHHHHhCc
Confidence 4677889999999999999999999998876654 33334445555542221 256677776544
No 62
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=93.49 E-value=0.044 Score=55.65 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=46.7
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHhcccCCC----CCCCcchHHHHHHHHHHHHHHHHHHH
Q 021208 142 SNTQDHIIAERKRREKLSQRFIALSAIVPGL----KKMDKASVLGDAIKYLKQLQEKVKIL 198 (316)
Q Consensus 142 ~~~~~h~~~Er~RR~~in~~~~~LrslvP~~----~k~dKasiL~~Ai~YIk~Lq~~v~~L 198 (316)
.+|...+..||-|=..||+.|.+|..+.--- +.-.|.-||..|+.-|-.|++||.+-
T Consensus 525 ERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 525 ERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred HHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 3678889999999889999999998765321 22357899999999999999999764
No 63
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=93.45 E-value=0.87 Score=34.55 Aligned_cols=65 Identities=6% Similarity=0.143 Sum_probs=44.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCc-ccCHHHHHHHHHH
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEF-NMTVKDLVKNLHS 310 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~-~ls~~eL~~~L~~ 310 (316)
.|.+..+.++|.|.+|+..+.++|+.+++....+..+....+.+.+..+... .-.+.++...|+.
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 3455667889999999999999999999888777655444456666665431 2234445555544
No 64
>PRK08577 hypothetical protein; Provisional
Probab=93.38 E-value=0.95 Score=38.22 Aligned_cols=67 Identities=19% Similarity=0.368 Sum_probs=49.7
Q ss_pred CeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeC-CeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 021208 243 KSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFG-SSVLDVTIIAQMDVEFNMTVKDLVKNLHS 310 (316)
Q Consensus 243 ~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g-~~~l~~ti~aq~~~~~~ls~~eL~~~L~~ 310 (316)
+.+.|.|.+.+++|+|.+|+..|.++++.+.+.++.+.. +....+.+...+.+. ...+.++.++|+.
T Consensus 55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~-~~~l~~l~~~L~~ 122 (136)
T PRK08577 55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS-DIDLEELEEELKK 122 (136)
T ss_pred cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc-hhhHHHHHHHHHc
Confidence 367899999999999999999999999999988876653 444445555666553 1345677777653
No 65
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=93.26 E-value=0.37 Score=36.10 Aligned_cols=58 Identities=9% Similarity=0.186 Sum_probs=41.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHH
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLH 309 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~ 309 (316)
.|+|.|.+++|++.+|+.++.+.+..+.+.++.+- +. ++++ .++.+-. .++.|.++|+
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~-i~l~--i~v~~~~--~L~~li~~L~ 59 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR-IYLN--FPTIEFE--KLQTLMPEIR 59 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce-EEEE--eEecCHH--HHHHHHHHHh
Confidence 47899999999999999999999999999998664 33 4443 3333321 2445555554
No 66
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=92.59 E-value=0.12 Score=53.23 Aligned_cols=39 Identities=31% Similarity=0.564 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhcccCCC----CCCCcchHHHHHHHHHH
Q 021208 151 ERKRREKLSQRFIALSAIVPGL----KKMDKASVLGDAIKYLK 189 (316)
Q Consensus 151 Er~RR~~in~~~~~LrslvP~~----~k~dKasiL~~Ai~YIk 189 (316)
-||-|++||.-+..|.+|+|.. .|.||.|||.-++-|++
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 3567899999999999999963 89999999999999975
No 67
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=92.57 E-value=1.1 Score=31.92 Aligned_cols=61 Identities=20% Similarity=0.300 Sum_probs=42.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEe-CCeEEEEEEEEEecCCcccCHHHHHHHHH
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTF-GSSVLDVTIIAQMDVEFNMTVKDLVKNLH 309 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~-g~~~l~~ti~aq~~~~~~ls~~eL~~~L~ 309 (316)
.|.|.+.+++|++.+|+..|.+.++.+.+...... ++....+.+..... . -.+.++...|+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~l~~~l~ 63 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGD--D-DVIEQIVKQLN 63 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECC--H-HHHHHHHHHHh
Confidence 46788899999999999999999999998887654 34433344444432 2 34555665554
No 68
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.37 E-value=1.1 Score=35.68 Aligned_cols=68 Identities=9% Similarity=0.161 Sum_probs=46.0
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 245 VLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 245 v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
..|-+..++++|.|.++|..+...|+.+.+-..-+..+....|.|-..++....-.++.+...|++.|
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~~~~ 82 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLRNDI 82 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHHHHh
Confidence 44556668889999999999999999999888877655544445555554432233445555555543
No 69
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=92.36 E-value=0.68 Score=44.41 Aligned_cols=69 Identities=12% Similarity=0.211 Sum_probs=49.6
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEE--E-eCCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHh
Q 021208 244 SVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVM--T-FGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQL 314 (316)
Q Consensus 244 ~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs--~-~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~~ 314 (316)
.+.|.|.|++++|++.+|-..|-++|+.+++.+-. + .+.+++-+.+... .....+.++|.+.|...-..
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~--~~~~~~~~~l~~~l~~l~~~ 80 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQ--SAEAASVDTFRQEFQPVAEK 80 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcC--CCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999974 3 3344443222211 12246788888888765443
No 70
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=91.74 E-value=1.7 Score=41.59 Aligned_cols=70 Identities=9% Similarity=0.119 Sum_probs=51.7
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEE-eCCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHhh
Q 021208 244 SVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMT-FGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQLF 315 (316)
Q Consensus 244 ~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~-~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~~~ 315 (316)
.+.|.|.|++++|++.+|.+.|-++|+.|.+.+..+ .++..+.. .+.+.-....+.++|.+.|...-..+
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m--~~~~~~p~~~~~~~L~~~L~~l~~~l 77 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFM--RVEFHSEEGLDEDALRAGFAPIAARF 77 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEE--EEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 467999999999999999999999999999998763 34444433 34443223357888888887765443
No 71
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=91.72 E-value=1.5 Score=41.87 Aligned_cols=70 Identities=7% Similarity=0.161 Sum_probs=52.5
Q ss_pred CeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEE--eCCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHh
Q 021208 243 KSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMT--FGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQL 314 (316)
Q Consensus 243 ~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~--~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~~ 314 (316)
..+.|.+.|++++|++.+|.+.|-++|+.+.+++..+ .++. +...+.+..+ ....+.++|...|...-..
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~-F~m~i~v~~~-~~~~~~~~L~~~L~~l~~~ 76 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGR-FFMRVEFEGD-GLIFNLETLRADFAALAEE 76 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCe-EEEEEEEEeC-CCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999988 7773 3333444441 2234577888777765443
No 72
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=91.30 E-value=1.9 Score=41.23 Aligned_cols=63 Identities=21% Similarity=0.346 Sum_probs=48.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEe--CCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTF--GSSVLDVTIIAQMDVEFNMTVKDLVKNLHS 310 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~--g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~ 310 (316)
.|.|.|++++|++.+|-..|-++|+.+++++-... ++.++ ..+.+..+ +...+.++|.+.|..
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~-mr~~v~~~-~~~~~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFF-MRVEFQLE-GFRLEESSLLAAFKS 66 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEE-EEEEEEeC-CCCCCHHHHHHHHHH
Confidence 57899999999999999999999999999997763 34433 23344443 234678888888887
No 73
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=91.14 E-value=1.7 Score=30.69 Aligned_cols=59 Identities=10% Similarity=0.157 Sum_probs=42.4
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeC-CeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 021208 247 IRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFG-SSVLDVTIIAQMDVEFNMTVKDLVKNLHS 310 (316)
Q Consensus 247 I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g-~~~l~~ti~aq~~~~~~ls~~eL~~~L~~ 310 (316)
+.|.+..++|.+.+|+..|.+.|+.|.+..+...+ +....+++.. ++. ...+|.+.|+.
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v--~~~---~~~~l~~~l~~ 61 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV--DSP---VPEEVLEELKA 61 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc--CCC---CCHHHHHHHHc
Confidence 56789999999999999999999999998887654 2233234433 332 35677777764
No 74
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.11 E-value=1.2 Score=31.63 Aligned_cols=56 Identities=11% Similarity=0.207 Sum_probs=39.4
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeC--CeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 021208 247 IRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFG--SSVLDVTIIAQMDVEFNMTVKDLVKNLHS 310 (316)
Q Consensus 247 I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g--~~~l~~ti~aq~~~~~~ls~~eL~~~L~~ 310 (316)
|.|.-+.++|.|.+++..|.++|+.|.+....... +... +...+++ .+++.+.|+.
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~---v~~~ve~-----~~~~~~~L~~ 59 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKAL---LIFRTED-----IEKAIEVLQE 59 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEE---EEEEeCC-----HHHHHHHHHH
Confidence 67788899999999999999999999776654443 2222 3344443 5566666654
No 75
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.62 E-value=1.4 Score=47.84 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=57.2
Q ss_pred eeEEEEeCCeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEE-eCCeEEEEEEEEEecCCcccCH---HHHHHHHHH
Q 021208 235 EIEARFCDKSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMT-FGSSVLDVTIIAQMDVEFNMTV---KDLVKNLHS 310 (316)
Q Consensus 235 ~Vev~v~~~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~-~g~~~l~~ti~aq~~~~~~ls~---~eL~~~L~~ 310 (316)
.+.++...+...|-|.|+.++.+|..|..++...|++|+.|.|.+ -+|++++.+ +++..++..+.. ..+.+.|.+
T Consensus 675 ~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtf-iv~~~~g~~~~~dr~~~~~~~l~~ 753 (867)
T COG2844 675 LISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTF-IVLEPDGFPVEEDRRAALRGELIE 753 (867)
T ss_pred eeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeE-EEecCCCCccchhHHHHHHHHHHH
Confidence 344555667788999999999999999999999999999999865 577899955 455556655552 124445555
Q ss_pred HH
Q 021208 311 AF 312 (316)
Q Consensus 311 al 312 (316)
++
T Consensus 754 ~l 755 (867)
T COG2844 754 AL 755 (867)
T ss_pred HH
Confidence 44
No 76
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.27 E-value=2.5 Score=29.92 Aligned_cols=59 Identities=8% Similarity=0.169 Sum_probs=41.1
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEe-CCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 021208 247 IRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTF-GSSVLDVTIIAQMDVEFNMTVKDLVKNLHS 310 (316)
Q Consensus 247 I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~-g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~ 310 (316)
|.+.+.+++|.+.+|+..|.++|+.+.+...... ++....+. ..+++. .+.++.+.|+.
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~--i~v~~~---~~~~~i~~l~~ 61 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMV--IEVDQP---IDEEVIEEIKK 61 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEE--EEeCCC---CCHHHHHHHHc
Confidence 5788999999999999999999999988876653 22222222 333332 55677777654
No 77
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=90.20 E-value=2.8 Score=30.45 Aligned_cols=37 Identities=11% Similarity=0.201 Sum_probs=32.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCC
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGS 282 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~ 282 (316)
.|.|..++++|.|.+|++.|.+.|+.|.+.-+.+.++
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~ 39 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSE 39 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCC
Confidence 4667889999999999999999999998887766655
No 78
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.85 E-value=2.1 Score=31.04 Aligned_cols=35 Identities=11% Similarity=0.261 Sum_probs=30.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEe
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTF 280 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~ 280 (316)
.+.|.+++++|.|.+|+..|.++|+.+......+.
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 47788999999999999999999999988776554
No 79
>PRK07334 threonine dehydratase; Provisional
Probab=89.59 E-value=1.9 Score=42.92 Aligned_cols=67 Identities=13% Similarity=0.272 Sum_probs=49.4
Q ss_pred CCeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEe----CCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 021208 242 DKSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTF----GSSVLDVTIIAQMDVEFNMTVKDLVKNLHS 310 (316)
Q Consensus 242 ~~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~----g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~ 310 (316)
+-.+.|+|.+.+++|+|.+|+..|.+.++.|.+.++.+- .+....+.+..++.+. -.+.+|.++|++
T Consensus 324 ~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~--~~L~~vi~~Lr~ 394 (403)
T PRK07334 324 GRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDA--AHLQEVIAALRA 394 (403)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCH--HHHHHHHHHHHH
Confidence 345899999999999999999999999999999987654 3344444555555432 345567777765
No 80
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=89.35 E-value=1.5 Score=33.10 Aligned_cols=48 Identities=6% Similarity=0.102 Sum_probs=36.8
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecC
Q 021208 248 RVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDV 295 (316)
Q Consensus 248 ~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~ 295 (316)
-+..++++|.|.+||..+...|+.+.+-..-+..+....|.|...++.
T Consensus 4 ~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 4 IFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc
Confidence 344577899999999999999999999888776665545555556554
No 81
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=88.27 E-value=1.4 Score=39.81 Aligned_cols=65 Identities=11% Similarity=0.159 Sum_probs=49.3
Q ss_pred CeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHH
Q 021208 243 KSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSA 311 (316)
Q Consensus 243 ~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~a 311 (316)
..++|.+.+++|+|++..|-++|.++|..+++++.+.+|+.+- ..+++... ...+.+|...|...
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa-~i~lvs~~---~~~~~~le~~L~~l 71 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFT-FIMLLSGS---WNAITLIESTLPLK 71 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceE-EEEEEeCC---hhHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999999998654 22333322 22566666665443
No 82
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=87.49 E-value=0.4 Score=50.68 Aligned_cols=47 Identities=32% Similarity=0.477 Sum_probs=40.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcccCCC----CCCCcchHHHHHHHHHHH
Q 021208 144 TQDHIIAERKRREKLSQRFIALSAIVPGL----KKMDKASVLGDAIKYLKQ 190 (316)
Q Consensus 144 ~~~h~~~Er~RR~~in~~~~~LrslvP~~----~k~dKasiL~~Ai~YIk~ 190 (316)
+..-.-+-|-||.|-|+-|..|..+||-. ...|||+|+.-||-|++-
T Consensus 47 kEkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 47 KEKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 44455677999999999999999999942 778999999999999873
No 83
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.41 E-value=3.6 Score=31.33 Aligned_cols=61 Identities=13% Similarity=0.206 Sum_probs=40.5
Q ss_pred EEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 021208 249 VHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHS 310 (316)
Q Consensus 249 I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~ 310 (316)
+..++++|.|.++|..++..|+.+.+-..-+..+..-.|.+-..++.... .++.+...|++
T Consensus 5 ~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~~-~i~~~l~~l~~ 65 (74)
T cd04929 5 FSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQR-RLDELVQLLKR 65 (74)
T ss_pred EEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCHH-HHHHHHHHHHH
Confidence 34467899999999999999999998887776554444455555543322 34444444433
No 84
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=87.12 E-value=0.58 Score=46.84 Aligned_cols=42 Identities=38% Similarity=0.536 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHhcccCCC----CCCCcchHHHHHHHHHHHH
Q 021208 150 AERKRREKLSQRFIALSAIVPGL----KKMDKASVLGDAIKYLKQL 191 (316)
Q Consensus 150 ~Er~RR~~in~~~~~LrslvP~~----~k~dKasiL~~Ai~YIk~L 191 (316)
+-|.||++-|.-|..|..++|-. ...||++|+.-|..|||--
T Consensus 8 aA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr 53 (598)
T KOG3559|consen 8 AARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMR 53 (598)
T ss_pred HHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHH
Confidence 45889999999999999999953 6799999999999999853
No 85
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.94 E-value=6 Score=28.67 Aligned_cols=60 Identities=15% Similarity=0.191 Sum_probs=40.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEe-CCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTF-GSSVLDVTIIAQMDVEFNMTVKDLVKNLHS 310 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~-g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~ 310 (316)
.|.+..++++|.|.+++..|.+.|+.+.+...... +...-.+.|..... ..+++.+.|+.
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~-----~~~~~~~~L~~ 63 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTM-----NPRPIIEDLRR 63 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecC-----CHHHHHHHHHH
Confidence 56788899999999999999999999987765433 12222233443321 23467666654
No 86
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.60 E-value=4 Score=29.97 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=40.8
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 021208 248 RVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHS 310 (316)
Q Consensus 248 ~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~ 310 (316)
+|.-+.++|-|.++++.|.. |..|+....-..+.....+++..+..+. -..++|.+.|+.
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~--~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDR--EDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCH--HHHHHHHHHHHH
Confidence 56778999999999999999 9999887766544333334455555442 245566666654
No 87
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=86.43 E-value=0.4 Score=45.18 Aligned_cols=53 Identities=26% Similarity=0.315 Sum_probs=45.9
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHhcccCC---CCCCCcchHHHHHHHHHHHHHHH
Q 021208 142 SNTQDHIIAERKRREKLSQRFIALSAIVPG---LKKMDKASVLGDAIKYLKQLQEK 194 (316)
Q Consensus 142 ~~~~~h~~~Er~RR~~in~~~~~LrslvP~---~~k~dKasiL~~Ai~YIk~Lq~~ 194 (316)
.++..=|..||+|--.+|+.|..||.++|. ..|+.|+-.|.-|-+||..|++-
T Consensus 71 ~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 71 LRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEV 126 (254)
T ss_pred hhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccc
Confidence 355667889999999999999999999994 37888999999999999988754
No 88
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=85.27 E-value=5.3 Score=34.36 Aligned_cols=67 Identities=13% Similarity=0.336 Sum_probs=50.6
Q ss_pred CCeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEE-EEeCCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 021208 242 DKSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSV-MTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHS 310 (316)
Q Consensus 242 ~~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asv-s~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~ 310 (316)
+..+.+.++.+.|.|.|+++|+++-..++.|+..+= .+..++.- +|+..... .-...+++|+.+|+.
T Consensus 70 ~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~An-vtlsi~~s-sm~~~V~~ii~kl~k 137 (150)
T COG4492 70 ERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRAN-VTLSIDTS-SMEKDVDKIIEKLRK 137 (150)
T ss_pred ceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceee-EEEEEEch-hhhhhHHHHHHHHhc
Confidence 456788899999999999999999999999988764 46777654 55544433 334578888888764
No 89
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=84.98 E-value=4.8 Score=35.44 Aligned_cols=61 Identities=16% Similarity=0.269 Sum_probs=45.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeC-CeEEEEEEEEEecCCcccCHHHHHHHHH
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFG-SSVLDVTIIAQMDVEFNMTVKDLVKNLH 309 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g-~~~l~~ti~aq~~~~~~ls~~eL~~~L~ 309 (316)
.|.|..++++|.|.+|...|...|+.+.+..+.+.. .....++|++.-++ -.++.|++-|.
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~---~~i~qi~kQl~ 65 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDE---QVIEQITKQLN 65 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCH---HHHHHHHHHHh
Confidence 577889999999999999999999999999888765 45566777766322 24445554443
No 90
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=84.75 E-value=1.4 Score=41.61 Aligned_cols=54 Identities=28% Similarity=0.281 Sum_probs=46.3
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhcccCCC---CCCCcchHHHHHHHHHHHHHHHHH
Q 021208 143 NTQDHIIAERKRREKLSQRFIALSAIVPGL---KKMDKASVLGDAIKYLKQLQEKVK 196 (316)
Q Consensus 143 ~~~~h~~~Er~RR~~in~~~~~LrslvP~~---~k~dKasiL~~Ai~YIk~Lq~~v~ 196 (316)
++.+-+..||+|-..||..|..||..||.. .|..|-.-|..|-.||--|-....
T Consensus 174 rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 174 RRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred hhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 456778999999999999999999999975 667788889999999988876653
No 91
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=84.39 E-value=6.5 Score=34.47 Aligned_cols=61 Identities=16% Similarity=0.302 Sum_probs=46.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeC-CeEEEEEEEEEecCCcccCHHHHHHHHH
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFG-SSVLDVTIIAQMDVEFNMTVKDLVKNLH 309 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g-~~~l~~ti~aq~~~~~~ls~~eL~~~L~ 309 (316)
.|.|..++++|.|.+|...|...|+.+.+..+.+.+ .....++|++.-+ .-.++.|.+-|.
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d---~~~i~qi~kQl~ 64 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGD---DKVLEQITKQLN 64 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECC---HHHHHHHHHHHh
Confidence 577889999999999999999999999999888776 4566677776532 234555555544
No 92
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=81.85 E-value=7.4 Score=27.04 Aligned_cols=35 Identities=11% Similarity=0.245 Sum_probs=30.0
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeC
Q 021208 247 IRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFG 281 (316)
Q Consensus 247 I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g 281 (316)
|.|..+.++|.+.++++.|.+.|+.|....+...+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~ 35 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETR 35 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc
Confidence 45788999999999999999999999887766544
No 93
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.18 E-value=6.4 Score=32.64 Aligned_cols=51 Identities=8% Similarity=0.102 Sum_probs=36.7
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecC
Q 021208 245 VLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDV 295 (316)
Q Consensus 245 v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~ 295 (316)
..|-+..++++|.|.+||..+...|+.+.+-..-+..+....|.|...++.
T Consensus 42 tSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg 92 (115)
T cd04930 42 ATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEV 92 (115)
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEe
Confidence 344455577899999999999999999998887776544434444445443
No 94
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=80.63 E-value=9.6 Score=36.45 Aligned_cols=68 Identities=10% Similarity=0.215 Sum_probs=48.2
Q ss_pred CeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEE--eCCeEEEEEEEEEecCC-cccCHHHHHHHHHHHHH
Q 021208 243 KSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMT--FGSSVLDVTIIAQMDVE-FNMTVKDLVKNLHSAFQ 313 (316)
Q Consensus 243 ~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~--~g~~~l~~ti~aq~~~~-~~ls~~eL~~~L~~al~ 313 (316)
..+.+.|+|+.++|++..|-.-|-++|..|+.++-.. .+++++ ..+....+ ...+.+.|.+.+.....
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FF---mR~~f~~~~~~~~~~~l~~~f~~~a~ 76 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFF---MRVEFEGEGGPLDREALRAAFAPLAE 76 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEE---EEEEEecCCCcccHHHHHHHHHHHHH
Confidence 4568889999999999999999999999999988663 133332 22333333 33677777777666433
No 95
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=79.87 E-value=7.8 Score=41.76 Aligned_cols=64 Identities=11% Similarity=0.159 Sum_probs=48.7
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHH
Q 021208 244 SVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLH 309 (316)
Q Consensus 244 ~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~ 309 (316)
.+.|+|.+.+++|+|.+|..+|-+.++.|.+.++..-.+.+..+.|..++.+- -.+..|..+|+
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~--~~L~~i~~~Lr 689 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARDR--VHLANIMRKIR 689 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECCH--HHHHHHHHHHh
Confidence 35788999999999999999999999999999987766555556666676553 23444555554
No 96
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=78.93 E-value=9.6 Score=41.34 Aligned_cols=64 Identities=11% Similarity=0.250 Sum_probs=47.5
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeC-CeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 021208 245 VLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFG-SSVLDVTIIAQMDVEFNMTVKDLVKNLHS 310 (316)
Q Consensus 245 v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g-~~~l~~ti~aq~~~~~~ls~~eL~~~L~~ 310 (316)
+.|.|.+.+++|+|.+|..+|-+.++.|.+.++..-. +....+.+..++.+- -.+..|..+|++
T Consensus 667 v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~--~~L~~l~~~L~~ 731 (743)
T PRK10872 667 LVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNL--QVLGRVLGKLNQ 731 (743)
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCH--HHHHHHHHHHhc
Confidence 5788999999999999999999999999999987653 444445566666553 234455555543
No 97
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=78.29 E-value=18 Score=32.64 Aligned_cols=69 Identities=13% Similarity=0.208 Sum_probs=50.3
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeC-----CeEEEEEEEEEecCCcccCHHHHHHHHHHHHHhh
Q 021208 245 VLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFG-----SSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQLF 315 (316)
Q Consensus 245 v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g-----~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~~~ 315 (316)
+.|.|...+++|++.+|-+.|-++|+.|.+-+.-+.+ ...+...+.+.++.+ ..+++|...|...-..+
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~--~~~~~L~~~l~~l~~eL 169 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPAS--QDAANIEQAFKALCTEL 169 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCC--CCHHHHHHHHHHHHHHh
Confidence 6788999999999999999999999999777766554 234444445555444 55777777776655443
No 98
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=77.59 E-value=2.8 Score=30.13 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=37.8
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 021208 248 RVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHS 310 (316)
Q Consensus 248 ~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~ 310 (316)
-+.+..++|++.+|+..|.+.|..+...+...-++... +. ..++.. .++++.++|++
T Consensus 3 ~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~-~~--~~~~~~---~l~~li~~l~~ 59 (69)
T cd04901 3 LHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGY-VV--IDIDSE---VSEELLEALRA 59 (69)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEE-EE--EEcCCC---CCHHHHHHHHc
Confidence 35788999999999999999999986655443333222 22 233333 56677777764
No 99
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=76.42 E-value=26 Score=27.02 Aligned_cols=60 Identities=10% Similarity=0.218 Sum_probs=44.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEe-CCeEEEEEEEEEecCCcccCHHHHHHHHH
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTF-GSSVLDVTIIAQMDVEFNMTVKDLVKNLH 309 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~-g~~~l~~ti~aq~~~~~~ls~~eL~~~L~ 309 (316)
.|.|...+++|.|.+|+..+..-|..|-+-++... +..+..+++.+. + .-.++.|.+-|.
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~--~--~~~i~ql~kQL~ 65 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA--S--ERPIDLLSSQLN 65 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC--C--CchHHHHHHHHh
Confidence 57788899999999999999999999988888764 344566676653 3 235555555544
No 100
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=76.18 E-value=12 Score=40.30 Aligned_cols=64 Identities=17% Similarity=0.271 Sum_probs=47.7
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHH
Q 021208 244 SVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLH 309 (316)
Q Consensus 244 ~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~ 309 (316)
.+.|+|.+.+++|+|.+|+.+|-+.+..|.+.++....+.+..+.|..++.+-. -+..|..+|+
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~~--~L~~ii~~L~ 673 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKNYK--HLLKIMLKIK 673 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECCHH--HHHHHHHHHh
Confidence 357889999999999999999999999999999877654555566666665532 2334444443
No 101
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=75.78 E-value=21 Score=27.38 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=38.7
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 021208 245 VLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHS 310 (316)
Q Consensus 245 v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~ 310 (316)
.++.|.-+.++|-|.++++.|- +..|........+..--.+.|..+..++ .-..+++.+.|+.
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~-~~~~~~i~~~L~~ 64 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANG-AEELAELLEDLKS 64 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCc-HHHHHHHHHHHHH
Confidence 4688999999999999999998 6666655544433222224455555441 1234455555543
No 102
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=74.82 E-value=13 Score=26.76 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=38.2
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEe--CCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 021208 248 RVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTF--GSSVLDVTIIAQMDVEFNMTVKDLVKNLHS 310 (316)
Q Consensus 248 ~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~--g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~ 310 (316)
-+..+.++|.+.+|.+.|.++|+.+.+..+..- ++... +.+ .++.. ...++.+.|+.
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~-~~i--~v~~~---~~~~~~~~l~~ 61 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEAL-MVL--SVDEP---VPDEVLEELRA 61 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEE-EEE--EeCCC---CCHHHHHHHHc
Confidence 457889999999999999999999987765542 34433 333 33332 23466666553
No 103
>PRK08198 threonine dehydratase; Provisional
Probab=74.03 E-value=22 Score=35.22 Aligned_cols=68 Identities=18% Similarity=0.307 Sum_probs=48.7
Q ss_pred eCCeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEe----CCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 021208 241 CDKSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTF----GSSVLDVTIIAQMDVEFNMTVKDLVKNLHS 310 (316)
Q Consensus 241 ~~~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~----g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~ 310 (316)
.+..+.+.|.-+.++|.|.+++..|-+.|..|+..+.... ......++|..+..+. -..++|.+.|++
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~--~~~~~l~~~L~~ 395 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGP--EHIEEILDALRD 395 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCH--HHHHHHHHHHHH
Confidence 4667899999999999999999999999999988776643 1223445555555322 145677777654
No 104
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=74.01 E-value=20 Score=28.38 Aligned_cols=62 Identities=11% Similarity=0.290 Sum_probs=46.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeC-CeEEEEEEEEEecCCcccCHHHHHHHHH
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFG-SSVLDVTIIAQMDVEFNMTVKDLVKNLH 309 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g-~~~l~~ti~aq~~~~~~ls~~eL~~~L~ 309 (316)
.|.+..++++|+|.+|...+-..|..+-+-++.... ..+..+||++..+++ -.++.|.+-|.
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~--~~ieqI~kQL~ 66 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDD--TSLHILIKKLK 66 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCH--HHHHHHHHHHh
Confidence 577888999999999999999999999888887653 356667777754443 34555555554
No 105
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=72.43 E-value=25 Score=27.10 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=38.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeC-CeEEEEEEEEE
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFG-SSVLDVTIIAQ 292 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g-~~~l~~ti~aq 292 (316)
.|.+..++++|+|.+|...+...|..+-+-++.... ..+..+||.+.
T Consensus 4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~ 51 (76)
T PRK06737 4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV 51 (76)
T ss_pred EEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE
Confidence 577888999999999999999999999888877544 45666777654
No 106
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=71.66 E-value=9.2 Score=30.62 Aligned_cols=69 Identities=10% Similarity=0.153 Sum_probs=49.8
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHh
Q 021208 244 SVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQL 314 (316)
Q Consensus 244 ~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~~ 314 (316)
.++|.|...+|+|+...|..+|-++|+.+++.+=+.+.+++- .-+.+..+. .......|.+.|..+...
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ft-m~~lV~~~~-~~~d~~~lr~~l~~~~~~ 71 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFT-MIMLVDISK-EVVDFAALRDELAAEGKK 71 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhce-eeeEEcCCh-HhccHHHHHHHHHHHHHh
Confidence 368899999999999999999999999999988766666432 223333332 234666677777666554
No 107
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=71.22 E-value=29 Score=40.65 Aligned_cols=73 Identities=15% Similarity=0.180 Sum_probs=56.5
Q ss_pred CeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEe----CCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHhh
Q 021208 243 KSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTF----GSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQLF 315 (316)
Q Consensus 243 ~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~----g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~~~ 315 (316)
+.+.++|-...++..|++||-.|+++||.|+...-..+ |..+.-+.+..+...+......++.+.+..+|...
T Consensus 488 ~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~~v 564 (1528)
T PF05088_consen 488 GRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFEAV 564 (1528)
T ss_pred CeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHHHH
Confidence 46889999888999999999999999999998875433 23333234566776777788889999999988753
No 108
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=70.21 E-value=28 Score=34.14 Aligned_cols=68 Identities=13% Similarity=0.192 Sum_probs=47.1
Q ss_pred eCCeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEe----CCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 021208 241 CDKSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTF----GSSVLDVTIIAQMDVEFNMTVKDLVKNLHS 310 (316)
Q Consensus 241 ~~~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~----g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~ 310 (316)
.+..+.+.|.-+.++|.|.++++.+.+.|..|++...... ......++|..+..+ .-..++|.+.|+.
T Consensus 302 ~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~--~~~~~~i~~~L~~ 373 (380)
T TIGR01127 302 SGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG--KEHLDEILKILRD 373 (380)
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC--HHHHHHHHHHHHH
Confidence 4566789999999999999999999999999988765521 112333455555543 2344566666654
No 109
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=68.52 E-value=32 Score=24.65 Aligned_cols=57 Identities=23% Similarity=0.398 Sum_probs=35.3
Q ss_pred EEEEEec---CCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 246 LIRVHCE---KRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 246 ~I~I~c~---k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
.|.|.+. ..+|++.+++.+|.+.|+.|..... .. ..+.+... +. ..++.+++|+..|
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~~---Se--~~is~~v~--~~---~~~~av~~Lh~~f 62 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEILQTAD---SH--TTISCLVS--ED---DVKEAVNALHEAF 62 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEEEEEc---Cc--cEEEEEEc--HH---HHHHHHHHHHHHh
Confidence 3445443 4689999999999999999974332 11 22222222 22 3456777777765
No 110
>PRK06382 threonine dehydratase; Provisional
Probab=68.33 E-value=27 Score=34.83 Aligned_cols=68 Identities=15% Similarity=0.146 Sum_probs=46.2
Q ss_pred eCCeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEE----EeCCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 021208 241 CDKSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVM----TFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHS 310 (316)
Q Consensus 241 ~~~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs----~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~ 310 (316)
.+..+.+.|.-+.++|.|.+|++.|.++|..|++.... ........++|..+..+ ....++|.+.|+.
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~--~~~~~~v~~~L~~ 398 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRG--QDHLDRILNALRE 398 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCC--HHHHHHHHHHHHH
Confidence 46677888999999999999999999999999887654 23222233445544432 1233466666654
No 111
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=66.91 E-value=24 Score=24.07 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=25.6
Q ss_pred EEEEEec---CCCCHHHHHHHHHHhCCCeEEEEEEE
Q 021208 246 LIRVHCE---KRKGVFEKIVAEIEKLHLTVINSSVM 278 (316)
Q Consensus 246 ~I~I~c~---k~~gll~~Il~~Le~lgL~Vv~asvs 278 (316)
+|.|.+. ...|.+.+++++|.+.++.|...+.+
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~ 37 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQG 37 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcC
Confidence 4566544 55789999999999999999776543
No 112
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=64.29 E-value=49 Score=24.19 Aligned_cols=54 Identities=22% Similarity=0.335 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEEEe-CCeEEEEEEEEEecCCcccCHHHHHHHHH
Q 021208 253 KRKGVFEKIVAEIEKLHLTVINSSVMTF-GSSVLDVTIIAQMDVEFNMTVKDLVKNLH 309 (316)
Q Consensus 253 k~~gll~~Il~~Le~lgL~Vv~asvs~~-g~~~l~~ti~aq~~~~~~ls~~eL~~~L~ 309 (316)
+++|.|.+|+..+..-|+.+-+-++... .+.+..++|.+.-++ -.++.|++-|.
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~---~~i~~l~~Ql~ 55 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDD---REIEQLVKQLE 55 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-C---CHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCc---hhHHHHHHHHh
Confidence 4689999999999999999988888773 345666777655322 35555655554
No 113
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=63.02 E-value=30 Score=37.33 Aligned_cols=53 Identities=9% Similarity=0.174 Sum_probs=45.0
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCC
Q 021208 244 SVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVE 296 (316)
Q Consensus 244 ~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~ 296 (316)
.+-|.|...+++|+|.+|+++|-+.+..|.+.++...++.+..+.|..++.+-
T Consensus 627 ~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~n~ 679 (701)
T COG0317 627 PVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVKNL 679 (701)
T ss_pred EEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEECcH
Confidence 46788899999999999999999999999999998877777766677777553
No 114
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=62.85 E-value=44 Score=36.06 Aligned_cols=67 Identities=7% Similarity=0.111 Sum_probs=50.0
Q ss_pred EEEEE-EecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHHH
Q 021208 245 VLIRV-HCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQ 313 (316)
Q Consensus 245 v~I~I-~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~ 313 (316)
-.+.| -++.++|+++++...|--+|+.|.+|++.+-|..+.. +.+.-.-+....+..+.+.++.++.
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~ 614 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVANGPWSAE--FDVRANGPQDFDPQEFLQAYKSGVY 614 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEecCCceEEE--EEEecCCCCCCChHHHHHHHHHhhc
Confidence 34444 4599999999999999999999999999994444433 3344444556678888888887763
No 115
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=61.71 E-value=52 Score=22.97 Aligned_cols=59 Identities=8% Similarity=0.230 Sum_probs=36.0
Q ss_pred EEEEEec---CCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 246 LIRVHCE---KRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 246 ~I~I~c~---k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
+|.|.+. ..+|++.+|+++|.+.|+.|.-.+...-+ ..+++... .. ..++++++|+.+|
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~---~~is~~v~--~~---~~~~~~~~lh~~~ 64 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSE---RNISAVID--ED---DATKALRAVHERF 64 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc---cEEEEEEe--HH---HHHHHHHHHHHHH
Confidence 4556553 45789999999999999999655432222 22222222 21 3455677777765
No 116
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=60.73 E-value=38 Score=25.49 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=33.0
Q ss_pred eeEEEEeCCeEEEEEEecCCCC------HHHHHHHHHHhCCCeEEEEEEE
Q 021208 235 EIEARFCDKSVLIRVHCEKRKG------VFEKIVAEIEKLHLTVINSSVM 278 (316)
Q Consensus 235 ~Vev~v~~~~v~I~I~c~k~~g------ll~~Il~~Le~lgL~Vv~asvs 278 (316)
.|.++..++.+.|.|.++...- -+..+.++|...|+.+.+.++.
T Consensus 28 ~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~ 77 (85)
T PF02120_consen 28 EVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVS 77 (85)
T ss_dssp EEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEE
T ss_pred EEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEE
Confidence 5556778999999999987642 3788999999999999987765
No 117
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=60.01 E-value=56 Score=29.14 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=46.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEe-CCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTF-GSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~-g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
.|.|..++++|+|.+|...|-..|+.+.+-++.+. ...+..+||++. .+... ++.|.+.|...+
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~--~~~~~-ieqL~kQL~KLi 68 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP--GDDRT-IEQLTKQLYKLV 68 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE--CCHHH-HHHHHHHHHHHh
Confidence 57888999999999999999999999988888652 223345666654 22222 677777766543
No 118
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=59.54 E-value=77 Score=25.67 Aligned_cols=63 Identities=8% Similarity=0.252 Sum_probs=45.1
Q ss_pred CeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCC-eEEEEEEEEEecCCcccCHHHHHHHHH
Q 021208 243 KSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGS-SVLDVTIIAQMDVEFNMTVKDLVKNLH 309 (316)
Q Consensus 243 ~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~-~~l~~ti~aq~~~~~~ls~~eL~~~L~ 309 (316)
+...|.+..++++|+|.+|...+-.-|..+-+-++...++ .+-.+||++. ++ -.++.|++-|.
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~~---~~i~Qi~kQL~ 70 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-DD---QRLEQMISQIE 70 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-Cc---hHHHHHHHHHh
Confidence 4467889999999999999999999998888877776654 3445566554 22 24555555443
No 119
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=58.67 E-value=82 Score=24.23 Aligned_cols=62 Identities=19% Similarity=0.214 Sum_probs=43.6
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 021208 245 VLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHS 310 (316)
Q Consensus 245 v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~ 310 (316)
+++.|.-+.++|-|.+.++.|- -+-+|..-+.-..|+..-++.+-.++.+. ...+|.+.|+.
T Consensus 2 ~~~~v~iPErpGal~~Fl~~l~-p~~~ITeF~YR~~~~~~a~vlvGi~~~~~---~~~~l~~~l~~ 63 (81)
T cd04907 2 RLFRFEFPERPGALKKFLNELL-PKWNITLFHYRNQGSDYGRVLVGIQVPDA---DLDELKERLDA 63 (81)
T ss_pred eEEEEEcCCCCCHHHHHHHHhC-CCCeEeEEEEecCCCCceeEEEEEEeChH---HHHHHHHHHHH
Confidence 5678899999999999999993 26777777766555544445555566533 66677777764
No 120
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=55.17 E-value=9.5 Score=33.51 Aligned_cols=43 Identities=23% Similarity=0.309 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHhcccCCC--CCCCcchHHHHHHHHHHHHH
Q 021208 150 AERKRREKLSQRFIALSAIVPGL--KKMDKASVLGDAIKYLKQLQ 192 (316)
Q Consensus 150 ~Er~RR~~in~~~~~LrslvP~~--~k~dKasiL~~Ai~YIk~Lq 192 (316)
.||.|..++++.+.-|+.|+|+. .++.+.--|.-+-+||..|.
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~d 73 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLD 73 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHH
Confidence 68999999999999999999986 33332222555555555543
No 121
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=55.15 E-value=52 Score=33.61 Aligned_cols=66 Identities=5% Similarity=0.114 Sum_probs=43.6
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 021208 245 VLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHS 310 (316)
Q Consensus 245 v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~ 310 (316)
..|-+...+++|.|.+||..+...|+.+.+-..-+.....-.+.|-+.++....-.++++.+.|++
T Consensus 17 TSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~~~~v~~aL~~Lk~ 82 (436)
T TIGR01268 17 TSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEASDRKLEGVIEHLRQ 82 (436)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCccHHHHHHHHHHHH
Confidence 444455577899999999999999999988887765444334444455543322334556666554
No 122
>PRK11899 prephenate dehydratase; Provisional
Probab=54.35 E-value=91 Score=29.80 Aligned_cols=51 Identities=8% Similarity=0.073 Sum_probs=39.7
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecC
Q 021208 245 VLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDV 295 (316)
Q Consensus 245 v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~ 295 (316)
..|-+..++++|.|.++|..+...|+.+..-..-+..+....|.|-..++.
T Consensus 195 tsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg 245 (279)
T PRK11899 195 TTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEG 245 (279)
T ss_pred EEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEEC
Confidence 344445578899999999999999999988888888776666666666655
No 123
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=52.88 E-value=92 Score=23.08 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=24.0
Q ss_pred EEEEEe---cCCCCHHHHHHHHHHhCCCeEEEEE
Q 021208 246 LIRVHC---EKRKGVFEKIVAEIEKLHLTVINSS 276 (316)
Q Consensus 246 ~I~I~c---~k~~gll~~Il~~Le~lgL~Vv~as 276 (316)
+|.|.+ ...+|++.+|+++|.+.|+.|....
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~ 36 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS 36 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE
Confidence 455532 4457999999999999999997654
No 124
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=52.69 E-value=1.3e+02 Score=28.12 Aligned_cols=65 Identities=11% Similarity=0.273 Sum_probs=43.7
Q ss_pred CeEEEEEEecCCCC--HHHHHHHHHHhCCCeEEEEEEEEeC-Ce--EEEEEEEEEecCCcccCHHHHHHHHH
Q 021208 243 KSVLIRVHCEKRKG--VFEKIVAEIEKLHLTVINSSVMTFG-SS--VLDVTIIAQMDVEFNMTVKDLVKNLH 309 (316)
Q Consensus 243 ~~v~I~I~c~k~~g--ll~~Il~~Le~lgL~Vv~asvs~~g-~~--~l~~ti~aq~~~~~~ls~~eL~~~L~ 309 (316)
....++|.|.+..+ +...+++.|++.++.+.+.++..++ +. .+.+++.++-. ....++.++.+|.
T Consensus 141 ~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~--~~~~le~iv~~L~ 210 (225)
T PRK15385 141 KRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHAD--YRKTRELIISRIG 210 (225)
T ss_pred eEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCC--chhhHHHHHHHHh
Confidence 35678899988764 5788889999999999999987764 22 23333443332 2346666666654
No 125
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.75 E-value=80 Score=22.69 Aligned_cols=50 Identities=12% Similarity=0.204 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 253 KRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 253 k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
..+|++.+++++|.+.++.++... .+-.++++... +. ..+++++.|+.+|
T Consensus 12 ~~~gv~~~~~~~L~~~~i~~i~~~-----~s~~~is~vv~--~~---d~~~av~~LH~~f 61 (63)
T cd04920 12 SLLHKLGPALEVFGKKPVHLVSQA-----ANDLNLTFVVD--ED---QADGLCARLHFQL 61 (63)
T ss_pred cCccHHHHHHHHHhcCCceEEEEe-----CCCCeEEEEEe--HH---HHHHHHHHHHHHH
Confidence 568999999999999887775533 33333443332 22 4567888888776
No 126
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=48.94 E-value=4.5 Score=43.16 Aligned_cols=60 Identities=23% Similarity=0.357 Sum_probs=50.0
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHhcccCCC-----CCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 021208 142 SNTQDHIIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQEKVKILEEQ 201 (316)
Q Consensus 142 ~~~~~h~~~Er~RR~~in~~~~~LrslvP~~-----~k~dKasiL~~Ai~YIk~Lq~~v~~L~~~ 201 (316)
.+...|+-+|.+||..++-.|..|.+++-+. .|+.++.-+...+.||..++.+...+.++
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e 714 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEE 714 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchh
Confidence 4678899999999999999999999998654 56677777999999999888777666554
No 127
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=48.35 E-value=74 Score=22.26 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEE
Q 021208 253 KRKGVFEKIVAEIEKLHLTVINSS 276 (316)
Q Consensus 253 k~~gll~~Il~~Le~lgL~Vv~as 276 (316)
...|...+|+++|++.|+.|....
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~ 35 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIP 35 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEe
Confidence 457899999999999999987764
No 128
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=47.17 E-value=68 Score=28.75 Aligned_cols=69 Identities=16% Similarity=0.280 Sum_probs=46.9
Q ss_pred CCeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEE--EEEe---CCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 242 DKSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSS--VMTF---GSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 242 ~~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~as--vs~~---g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
+.-+.+++...+|+|++-++.+.|..+|+.+-+-. ..+. +...||+.|.+-.+ ..+++..|...+...-
T Consensus 90 ~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lP--a~~~i~~l~~~f~al~ 163 (176)
T COG2716 90 PAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLP--ANLSISALRDAFEALC 163 (176)
T ss_pred CceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCC--CcCcHHHHHHHHHHHH
Confidence 44578889999999999999999999998875443 3332 23455554444443 3467777777765543
No 129
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=45.69 E-value=8.1 Score=41.30 Aligned_cols=62 Identities=24% Similarity=0.325 Sum_probs=51.7
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHhcccCCC-----CCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021208 142 SNTQDHIIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQEKVKILEEQANKKT 206 (316)
Q Consensus 142 ~~~~~h~~~Er~RR~~in~~~~~LrslvP~~-----~k~dKasiL~~Ai~YIk~Lq~~v~~L~~~~~~~~ 206 (316)
-....|+.++|+||-.+.++|..|-+|.|.. .+..+++||. +.|+.+++.-+.+.+....+.
T Consensus 786 ~v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~~~kr 852 (856)
T KOG3582|consen 786 MVSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKIEGKR 852 (856)
T ss_pred eeecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhhhhhc
Confidence 4567899999999999999999999999853 5678899998 888999988888887665443
No 130
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.51 E-value=96 Score=21.15 Aligned_cols=57 Identities=16% Similarity=0.243 Sum_probs=34.4
Q ss_pred EEEEEe---cCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 246 LIRVHC---EKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 246 ~I~I~c---~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
+|.|.+ .+.++++.+++.+|.+.++.|.-.+.+ +.. ++|... . -..+++.+.|+..|
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~s--~~~---is~~v~--~---~~~~~~~~~l~~~l 61 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMISTS--EIK---ISCLVD--E---DDAEKAVRALHEAF 61 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEcc--CCe---EEEEEe--H---HHHHHHHHHHHHHh
Confidence 345543 245789999999999999988666532 222 222211 1 23455666776665
No 131
>PRK11898 prephenate dehydratase; Provisional
Probab=45.36 E-value=1.2e+02 Score=28.96 Aligned_cols=51 Identities=6% Similarity=0.012 Sum_probs=36.3
Q ss_pred EEEEEEecC-CCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecC
Q 021208 245 VLIRVHCEK-RKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDV 295 (316)
Q Consensus 245 v~I~I~c~k-~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~ 295 (316)
..|-+..++ ++|.|.++|..+...|+.+.+-..-+..++...|.|-+.++.
T Consensus 197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg 248 (283)
T PRK11898 197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEG 248 (283)
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEc
Confidence 344455655 499999999999999999998888776554444444455543
No 132
>PRK08526 threonine dehydratase; Provisional
Probab=44.60 E-value=96 Score=31.04 Aligned_cols=67 Identities=9% Similarity=0.150 Sum_probs=46.3
Q ss_pred eCCeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCe----EEEEEEEEEecCCcccCHHHHHHHHH
Q 021208 241 CDKSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSS----VLDVTIIAQMDVEFNMTVKDLVKNLH 309 (316)
Q Consensus 241 ~~~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~----~l~~ti~aq~~~~~~ls~~eL~~~L~ 309 (316)
.+..+.+.|.-+.++|-|.+++..+-+.+.+|+.......... -..+.|..+..+. -..++|.+.|+
T Consensus 323 ~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~l~ 393 (403)
T PRK08526 323 SYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGK--EHQEEIRKILT 393 (403)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCH--HHHHHHHHHHH
Confidence 4677899999999999999999999999999998887554332 1223344444332 23445555554
No 133
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=44.24 E-value=52 Score=27.95 Aligned_cols=38 Identities=13% Similarity=0.272 Sum_probs=33.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCe
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSS 283 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~ 283 (316)
.|.|..++++|-|..++..|-+.|+.+---++.-.|++
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dF 42 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDF 42 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCc
Confidence 57899999999999999999999999887777666654
No 134
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=43.81 E-value=95 Score=22.56 Aligned_cols=51 Identities=22% Similarity=0.374 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 254 RKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 254 ~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
.+|++.+++++|.+.|+.|...+.++-+ ..+++. ++++ ..++.++.|+..|
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~---~~is~~--V~~~---~~~~av~~Lh~~f 64 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMRN---VDVQFV--VDRD---DYDNAIKALHAAL 64 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCCe---eEEEEE--EEHH---HHHHHHHHHHHHH
Confidence 5689999999999999999665533322 223222 2222 4567788887765
No 135
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=42.88 E-value=95 Score=20.35 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHHHhCCCeEEEEEE
Q 021208 254 RKGVFEKIVAEIEKLHLTVINSSV 277 (316)
Q Consensus 254 ~~gll~~Il~~Le~lgL~Vv~asv 277 (316)
..|.+.+++++|.+.++.|.-...
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~ 36 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQ 36 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEc
Confidence 578999999999999998876554
No 136
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.67 E-value=1.2e+02 Score=21.68 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 253 KRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 253 k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
+.+|++.+++.+|.+.|+.|.-.+..+-+. .+++... +. ..+.+++.|+..|
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~---sis~~v~--~~---~~~~av~~Lh~~f 63 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKV---NISLIVN--DS---EAEGCVQALHKSF 63 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccc---eEEEEEe--HH---HHHHHHHHHHHHH
Confidence 347899999999999999996554333232 2223222 22 3456777777766
No 137
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.38 E-value=1.3e+02 Score=21.08 Aligned_cols=32 Identities=6% Similarity=0.171 Sum_probs=23.5
Q ss_pred EEEEEec---CCCCHHHHHHHHHHhCCCeEEEEEE
Q 021208 246 LIRVHCE---KRKGVFEKIVAEIEKLHLTVINSSV 277 (316)
Q Consensus 246 ~I~I~c~---k~~gll~~Il~~Le~lgL~Vv~asv 277 (316)
+|.|.+. ..+|.+.+++++|.+.|+.|.-.+.
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q 37 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQ 37 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEe
Confidence 3444443 4578999999999999999955443
No 138
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=39.90 E-value=45 Score=24.33 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=27.6
Q ss_pred CCeEEEEEEec----CCCCHHHHHHHHHHhCCCeEEEEE
Q 021208 242 DKSVLIRVHCE----KRKGVFEKIVAEIEKLHLTVINSS 276 (316)
Q Consensus 242 ~~~v~I~I~c~----k~~gll~~Il~~Le~lgL~Vv~as 276 (316)
++-..|.|.++ ..+|++.++..+|-+.|+.|...+
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 33457788776 367999999999999999998776
No 139
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=39.71 E-value=1.1e+02 Score=28.59 Aligned_cols=39 Identities=23% Similarity=0.434 Sum_probs=33.7
Q ss_pred eEEEEEEecCCCCH-HHHHHHHHHhCCCeEEEEEEEEeCCe
Q 021208 244 SVLIRVHCEKRKGV-FEKIVAEIEKLHLTVINSSVMTFGSS 283 (316)
Q Consensus 244 ~v~I~I~c~k~~gl-l~~Il~~Le~lgL~Vv~asvs~~g~~ 283 (316)
++.|.+||-+..|+ +...+.+++ .|.+++++++..+|++
T Consensus 189 ~i~l~~H~Hn~~GlA~An~laAi~-aG~~~iD~s~~GlG~~ 228 (268)
T cd07940 189 KVPISVHCHNDLGLAVANSLAAVE-AGARQVECTINGIGER 228 (268)
T ss_pred ceeEEEEecCCcchHHHHHHHHHH-hCCCEEEEEeeccccc
Confidence 37789999999997 888999996 5999999999998854
No 140
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.75 E-value=97 Score=23.90 Aligned_cols=56 Identities=11% Similarity=0.201 Sum_probs=32.7
Q ss_pred cCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 252 EKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 252 ~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
.+.-|.+.++|+.||.+|+.+-+ .|-|--.+.+ +..-..-..-...+|+..|++.+
T Consensus 12 n~evGF~rk~L~I~E~~~is~Eh---~PSGID~~Si--ii~~~~~~~~~~~~i~~~i~~~~ 67 (76)
T cd04911 12 NREVGFGRKLLSILEDNGISYEH---MPSGIDDISI--IIRDNQLTDEKEQKILAEIKEEL 67 (76)
T ss_pred cchhcHHHHHHHHHHHcCCCEee---ecCCCccEEE--EEEccccchhhHHHHHHHHHHhc
Confidence 44579999999999999998877 3444322333 33221111114455666665543
No 141
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=38.69 E-value=1e+02 Score=31.77 Aligned_cols=65 Identities=11% Similarity=0.188 Sum_probs=41.4
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEE-EEEEEEecCCcccCHHHHHHHHHH
Q 021208 245 VLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLD-VTIIAQMDVEFNMTVKDLVKNLHS 310 (316)
Q Consensus 245 v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~-~ti~aq~~~~~~ls~~eL~~~L~~ 310 (316)
+-|-+...++.|.|.++|..++..|+.+.+-..-+....... +.|.+.++... -.+.++.+.|++
T Consensus 32 tSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~-~~l~~aL~~Lk~ 97 (464)
T TIGR01270 32 LSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFH-YGLQEAMDLLKS 97 (464)
T ss_pred EEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCH-HHHHHHHHHHHH
Confidence 344455577899999999999999999998887766544333 33334443221 234445555544
No 142
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.85 E-value=1.4e+02 Score=20.73 Aligned_cols=59 Identities=20% Similarity=0.190 Sum_probs=35.4
Q ss_pred EEEEEec---CCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 246 LIRVHCE---KRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 246 ~I~I~c~---k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
+|.|.+. +.++++.+++.+|.+.|+.|.-.+...-+ ..+++... . -..+++.+.|++.|
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~---~~isf~v~--~---~d~~~~~~~lh~~~ 64 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGSSE---ISIMIGVH--N---EDADKAVKAIYEEF 64 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc---cEEEEEEe--H---HHHHHHHHHHHHHH
Confidence 4555553 45789999999999999988554432211 22222222 2 13456677777765
No 143
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.80 E-value=1.7e+02 Score=21.91 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=21.5
Q ss_pred ecCCCCHHHHHHHHHHhCCCeEEEEE
Q 021208 251 CEKRKGVFEKIVAEIEKLHLTVINSS 276 (316)
Q Consensus 251 c~k~~gll~~Il~~Le~lgL~Vv~as 276 (316)
.+..+|.+.+|+++|.+.|+.|--..
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~ 36 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLIT 36 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEe
Confidence 35568999999999999998886654
No 144
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=37.41 E-value=36 Score=22.05 Aligned_cols=16 Identities=38% Similarity=0.677 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhc
Q 021208 152 RKRREKLSQRFIALSA 167 (316)
Q Consensus 152 r~RR~~in~~~~~Lrs 167 (316)
|+||+.++.++..||.
T Consensus 14 rrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 14 RRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7889999999999885
No 145
>PF02542 YgbB: YgbB family; InterPro: IPR003526 MECDP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate) synthetase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis, isoprenoids being essential in all organisms. Isoprenoids can also be synthesized through the mevalonate pathway. The non-mevolante route is used by many bacteria and human pathogens, including Mycobacterium tuberculosis and Plasmodium falciparum. This route appears to involve seven enzymes. MECDP synthetase catalyses the intramolecular attack by a phosphate group on a diphosphate, with cytidine monophosphate (CMP) acting as the leaving group to give the cyclic diphosphate product MEDCP. The enzyme is a trimer with three active sites shared between adjacent copies of the protein. The enzyme also has two metal binding sites, the metals playing key roles in catalysis[]. A number of proteins from eukaryotes and prokaryotes share this common N-terminal signature and appear to be involved in terpenoid biosynthesis. The YgbB protein is a putative enzyme of this type [].; GO: 0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity, 0016114 terpenoid biosynthetic process; PDB: 3T80_B 3GHZ_A 2PMP_A 3F6M_A 3FPI_A 3RE3_A 1T0A_C 1W57_A 1W55_A 3B6N_A ....
Probab=35.12 E-value=96 Score=27.33 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 257 VFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 257 ll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
+|.++++.+++.|..|.| +++||++|...-.. -..++.++|-.+|
T Consensus 76 lL~~~~~~~~~~g~~i~n----------iD~tii~e~PKi~p-~~~~m~~~la~~L 120 (157)
T PF02542_consen 76 LLKEVVELLREKGYRIVN----------IDITIIAERPKISP-YRPAMRENLAKLL 120 (157)
T ss_dssp HHHHHHHHHHHTTEEEEE----------EEEEEESSSSTTGG-GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcEEEE----------EEEEEEcCCCccHH-HHHHHHHHHHHHh
Confidence 799999999999999999 56788887655433 3667777776665
No 146
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=34.95 E-value=2.5e+02 Score=28.11 Aligned_cols=47 Identities=4% Similarity=0.096 Sum_probs=37.9
Q ss_pred EEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecC
Q 021208 249 VHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDV 295 (316)
Q Consensus 249 I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~ 295 (316)
+..++++|.|.++|..|...|+....-..-+..+....|.|-..++.
T Consensus 302 ~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg 348 (386)
T PRK10622 302 MATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQA 348 (386)
T ss_pred EEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeC
Confidence 44468999999999999999999988888787777666666667654
No 147
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=34.46 E-value=1.2e+02 Score=28.10 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=33.8
Q ss_pred EEEEEEecCCCCH-HHHHHHHHHhCCCeEEEEEEEEeCCe
Q 021208 245 VLIRVHCEKRKGV-FEKIVAEIEKLHLTVINSSVMTFGSS 283 (316)
Q Consensus 245 v~I~I~c~k~~gl-l~~Il~~Le~lgL~Vv~asvs~~g~~ 283 (316)
+.|.+||-+..|+ +...+.+++ .|.+.+++++...|++
T Consensus 186 ~~l~~H~Hn~~GlA~AN~laAi~-aGa~~vd~s~~GlG~~ 224 (263)
T cd07943 186 TPVGFHGHNNLGLAVANSLAAVE-AGATRIDGSLAGLGAG 224 (263)
T ss_pred ceEEEEecCCcchHHHHHHHHHH-hCCCEEEeecccccCC
Confidence 4788999999997 889999996 6999999999999887
No 148
>PRK14623 hypothetical protein; Provisional
Probab=34.43 E-value=2e+02 Score=23.63 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021208 181 LGDAIKYLKQLQEKVKILEEQANKKT 206 (316)
Q Consensus 181 L~~Ai~YIk~Lq~~v~~L~~~~~~~~ 206 (316)
+.+..+-.+++|++.++++++.+...
T Consensus 3 ~~~~mkqaqkmQ~km~~~Qeel~~~~ 28 (106)
T PRK14623 3 MMGMMGKLKEAQQKVEATKKRLDTVL 28 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccE
Confidence 45666778889999999998887643
No 149
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=33.97 E-value=64 Score=34.86 Aligned_cols=60 Identities=10% Similarity=0.257 Sum_probs=47.8
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHHH
Q 021208 245 VLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQ 313 (316)
Q Consensus 245 v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~ 313 (316)
.+++|....+.|+|..|+.+|. +|.-+.++++|..+++.+..+ ++ ..-..+.+.+..+|.
T Consensus 632 ~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~---~~--~~r~~~~~~~~~~~~ 691 (693)
T PRK00227 632 NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK---PG--FDRATVERDVTRVLA 691 (693)
T ss_pred cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec---Cc--ccHHHHHHHHHHHHh
Confidence 5788999999999999999999 899999999999988765443 33 345667777777754
No 150
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=33.76 E-value=2.9e+02 Score=26.60 Aligned_cols=52 Identities=6% Similarity=0.105 Sum_probs=39.6
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCC
Q 021208 245 VLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVE 296 (316)
Q Consensus 245 v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~ 296 (316)
..|-+..++++|.|.++|..|...|+....-.+-+..+..-.|.|.+.++..
T Consensus 195 Tsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~ 246 (279)
T COG0077 195 TSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGH 246 (279)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecC
Confidence 3444556689999999999999999999888877777666666666666544
No 151
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.61 E-value=1.7e+02 Score=20.60 Aligned_cols=57 Identities=23% Similarity=0.465 Sum_probs=32.9
Q ss_pred EEEEEec---CCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 246 LIRVHCE---KRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 246 ~I~I~c~---k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
+|.|.+. ..+|++.+++++|.+.++.+++ .|.+-..+++... +. ..+.+++.|+..|
T Consensus 3 lIsvvG~~~~~~~~v~~~i~~~L~~i~i~~i~-----~~~s~~~is~~V~--~~---~~~~a~~~Lh~~f 62 (64)
T cd04917 3 LVALIGNDISETAGVEKRIFDALEDINVRMIC-----YGASNHNLCFLVK--EE---DKDEVVQRLHSRL 62 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHhCCeEEEE-----EecCccEEEEEEe--HH---HHHHHHHHHHHHH
Confidence 4555554 4579999999999765555443 3333333333322 22 3566777777665
No 152
>cd00554 MECDP_synthase MECDP_synthase (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase), encoded by the ispF gene, catalyzes the formation of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid biosynthesis. This pathway is present in bacteria, plants and some protozoa but is distinct from that used by mammals and Archaea. MECDP_synthase forms a homotrimer, carrying three active sites, each of which is formed in a cleft between pairs of subunits.
Probab=33.10 E-value=1.4e+02 Score=26.17 Aligned_cols=46 Identities=22% Similarity=0.248 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 256 GVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 256 gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
-+|.++++.+++.|..|.| +++||+++...-.. -..++.++|-.+|
T Consensus 74 ~lL~~~~~~~~~~g~~i~n----------iD~tii~e~PKi~p-~~~~m~~~ls~~L 119 (153)
T cd00554 74 ILLEEALKLIREKGYEIVN----------IDITIIAERPKISP-YREAMRANLAELL 119 (153)
T ss_pred HHHHHHHHHHHHcCCEEEE----------EEEEEEecCCcchH-HHHHHHHHHHHHh
Confidence 3799999999999999999 56788888755322 3455666665554
No 153
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=32.97 E-value=4.2e+02 Score=26.49 Aligned_cols=67 Identities=7% Similarity=0.054 Sum_probs=43.9
Q ss_pred eCCeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEE-eCCeEEEEEEEEEecCCcccCHHHHHHHHH
Q 021208 241 CDKSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMT-FGSSVLDVTIIAQMDVEFNMTVKDLVKNLH 309 (316)
Q Consensus 241 ~~~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~-~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~ 309 (316)
.|..+.+++.-+.++|-|.++++.+-..+.+|+....-. .+...-.+.|..+..+. --.++|.+.|+
T Consensus 322 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~~--~h~~~i~~~L~ 389 (409)
T TIGR02079 322 EGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELNDK--EDFAGLLERMA 389 (409)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCCH--HHHHHHHHHHH
Confidence 467789999999999999999997777776888766542 33223334455565542 12344555544
No 154
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=32.86 E-value=2.6e+02 Score=28.88 Aligned_cols=66 Identities=11% Similarity=0.143 Sum_probs=43.0
Q ss_pred eCCeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 021208 241 CDKSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHS 310 (316)
Q Consensus 241 ~~~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~ 310 (316)
.+.++.+.|.-+.++|-|.++++.|-.. .|+..+.-..+...-+++|..++.+. -..++|.+.|+.
T Consensus 322 ~~re~~l~V~iPerPGal~~f~~~i~~~--nItef~yr~~~~~~a~v~vgie~~~~--~~~~~l~~~L~~ 387 (499)
T TIGR01124 322 EQREALLAVTIPEQPGSFLKFCELLGNR--NITEFNYRYADRKDAHIFVGVQLSNP--QERQEILARLND 387 (499)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhhc--ceEEEEEEecCCCeEEEEEEEEeCCH--HHHHHHHHHHHH
Confidence 3678999999999999999999999874 44444443333333445555665432 244556666543
No 155
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=32.55 E-value=1.1e+02 Score=28.69 Aligned_cols=38 Identities=13% Similarity=0.372 Sum_probs=33.8
Q ss_pred EEEEEEecCCCCH-HHHHHHHHHhCCCeEEEEEEEEeCCe
Q 021208 245 VLIRVHCEKRKGV-FEKIVAEIEKLHLTVINSSVMTFGSS 283 (316)
Q Consensus 245 v~I~I~c~k~~gl-l~~Il~~Le~lgL~Vv~asvs~~g~~ 283 (316)
+-|.+||-+.-|+ +...+.+++ .|.+.+++++..+|++
T Consensus 193 ~~l~~H~Hnd~GlA~aN~laA~~-aGa~~vd~sv~GlG~~ 231 (275)
T cd07937 193 LPIHLHTHDTSGLAVATYLAAAE-AGVDIVDTAISPLSGG 231 (275)
T ss_pred CeEEEEecCCCChHHHHHHHHHH-hCCCEEEEecccccCC
Confidence 6788999999897 888899996 6999999999999987
No 156
>PRK09224 threonine dehydratase; Reviewed
Probab=32.52 E-value=3e+02 Score=28.38 Aligned_cols=67 Identities=12% Similarity=0.135 Sum_probs=42.5
Q ss_pred eCCeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 021208 241 CDKSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHS 310 (316)
Q Consensus 241 ~~~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~ 310 (316)
.++++.+.|.-+.++|-|.++++.|- +..|+..+.-..+...-.++|..+..+. .-..++|.+.|+.
T Consensus 325 ~~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~-~~~~~~i~~~L~~ 391 (504)
T PRK09224 325 EQREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRG-QEERAEIIAQLRA 391 (504)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCCh-hhHHHHHHHHHHH
Confidence 35688999999999999999999998 4555554443333333334455555432 1125566666653
No 157
>PRK14627 hypothetical protein; Provisional
Probab=32.24 E-value=2.3e+02 Score=22.87 Aligned_cols=25 Identities=12% Similarity=0.272 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q 021208 182 GDAIKYLKQLQEKVKILEEQANKKT 206 (316)
Q Consensus 182 ~~Ai~YIk~Lq~~v~~L~~~~~~~~ 206 (316)
.+..+-.+.+|++.++++++.+...
T Consensus 4 ~~~mkqaq~mQ~km~~~Q~el~~~~ 28 (100)
T PRK14627 4 RQLMQMAQQMQRQMQKVQEELAATI 28 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccE
Confidence 3455667788999999888877643
No 158
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=32.21 E-value=1.9e+02 Score=21.03 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=24.4
Q ss_pred EEEEEe---cCCCCHHHHHHHHHHhCCCeEEEEEEE
Q 021208 246 LIRVHC---EKRKGVFEKIVAEIEKLHLTVINSSVM 278 (316)
Q Consensus 246 ~I~I~c---~k~~gll~~Il~~Le~lgL~Vv~asvs 278 (316)
.|.|.. ....|++.+++++|.+.++.|.-.+..
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 455533 345789999999999999999655543
No 159
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=32.03 E-value=2.2e+02 Score=22.90 Aligned_cols=26 Identities=38% Similarity=0.540 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021208 181 LGDAIKYLKQLQEKVKILEEQANKKT 206 (316)
Q Consensus 181 L~~Ai~YIk~Lq~~v~~L~~~~~~~~ 206 (316)
+.+.++-++++|+++++++++++...
T Consensus 7 ~~~m~kqaq~mQ~k~~~~q~eL~~~~ 32 (102)
T TIGR00103 7 LGELMKQAQQMQEKMKKLQEEIAQFE 32 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccE
Confidence 56677778889999999999887643
No 160
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=30.85 E-value=3.3e+02 Score=24.17 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=37.1
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEe---CCeEEEEEEEEEec
Q 021208 245 VLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTF---GSSVLDVTIIAQMD 294 (316)
Q Consensus 245 v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~---g~~~l~~ti~aq~~ 294 (316)
+.+-|..+.++|-|+++|+=|-+.|..|++..-+.- |+++- +-|..+++
T Consensus 6 itldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~p-V~i~~~~d 57 (170)
T COG2061 6 ITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVP-VQIVFEGD 57 (170)
T ss_pred EEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCcee-EEEEEEec
Confidence 456678889999999999999999999988776654 66543 44555554
No 161
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.61 E-value=72 Score=24.51 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 021208 181 LGDAIKYLKQLQEKVKILEEQANK 204 (316)
Q Consensus 181 L~~Ai~YIk~Lq~~v~~L~~~~~~ 204 (316)
+..||+-|.-||-.|++|++++..
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~ 36 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNS 36 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 678999999999999999987653
No 162
>PRK14626 hypothetical protein; Provisional
Probab=30.58 E-value=2.4e+02 Score=23.19 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCCCCCeeEEEEeCCeEEEEEEe
Q 021208 181 LGDAIKYLKQLQEKVKILEEQANKKTIESVVFVNKTQLSDEGDNPNGAFNEALPEIEARFCDKSVLIRVHC 251 (316)
Q Consensus 181 L~~Ai~YIk~Lq~~v~~L~~~~~~~~~es~~~~kk~~~~~~~~~s~~~~~~~~p~Vev~v~~~~v~I~I~c 251 (316)
+.+-++-.+++|++.++++++++.+..+.. ...--|+|.+.|+.-+++|..
T Consensus 7 ~~~mmkqaq~mQ~km~~~qeeL~~~~v~g~--------------------sggG~VkV~~nG~~ev~~i~I 57 (110)
T PRK14626 7 LAELMKQMQSIKENVEKAKEELKKEEIVVE--------------------VGGGMVKVVSNGLGEIKDVEI 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEEEE--------------------ecCcEEEEEEECCccEEEEEE
Confidence 556677788899999999998886543321 011257788888776666654
No 163
>PRK00084 ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed
Probab=30.57 E-value=1.5e+02 Score=26.14 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 257 VFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 257 ll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
+|.++++.+++.|..++| +++||++|...-.. -.+++.++|-++|
T Consensus 78 lL~~~~~~~~~~g~~i~n----------iD~tii~e~PKi~p-~~~~m~~~la~~L 122 (159)
T PRK00084 78 LLREVARLLRAKGYRIGN----------VDITIIAQRPKMAP-HIEEMRANIAEDL 122 (159)
T ss_pred HHHHHHHHHHHcCCEEEE----------EEEEEEcCCCcchH-HHHHHHHHHHHHh
Confidence 799999999999999999 55778888655332 4456666666554
No 164
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.00 E-value=1.9e+02 Score=19.94 Aligned_cols=59 Identities=19% Similarity=0.221 Sum_probs=35.3
Q ss_pred EEEEEec---CCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 246 LIRVHCE---KRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 246 ~I~I~c~---k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
+|.|.+. ..++++.+++++|.+.|+.|.-.+...-+ .+++|...- -..+++.+.|+..|
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~---~~isf~i~~-----~~~~~~~~~Lh~~~ 64 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSE---YNISFVVAE-----DDGWAAVKAVHDEF 64 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc---ceEEEEEeH-----HHHHHHHHHHHHHh
Confidence 4555543 45789999999999999888544432212 222333222 13456677777765
No 165
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=29.84 E-value=1.6e+02 Score=27.26 Aligned_cols=53 Identities=17% Similarity=0.294 Sum_probs=40.1
Q ss_pred EEEEEEecCCCCH-HHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 021208 245 VLIRVHCEKRKGV-FEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHS 310 (316)
Q Consensus 245 v~I~I~c~k~~gl-l~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~ 310 (316)
+-|.+||-+..|+ +...+.++ ..|.+++++++.-+|.+ ..+...++|+..|+.
T Consensus 183 ~~l~~H~Hn~~Gla~An~laAi-~aG~~~vd~s~~G~G~~------------aGN~~tE~lv~~l~~ 236 (259)
T cd07939 183 LPLEFHAHNDLGLATANTLAAV-RAGATHVSVTVNGLGER------------AGNAALEEVVMALKH 236 (259)
T ss_pred CeEEEEecCCCChHHHHHHHHH-HhCCCEEEEeccccccc------------ccCcCHHHHHHHHHH
Confidence 5688999999987 88888898 58999999999888853 233455555555543
No 166
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=29.71 E-value=89 Score=23.84 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 021208 181 LGDAIKYLKQLQEKVKILEEQAN 203 (316)
Q Consensus 181 L~~Ai~YIk~Lq~~v~~L~~~~~ 203 (316)
+..||+-|..||.++++|+++..
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~ 35 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNN 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999998644
No 167
>TIGR00151 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. Members of this protein family are 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, the IspF protein of the deoxyxylulose (non-mevalonate) pathway of IPP biosynthesis. This protein occurs as an IspDF bifunctional fusion protein in about 20 percent of bacterial genomes.
Probab=29.57 E-value=1.6e+02 Score=25.83 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 256 GVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 256 gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
-+|.++++.+++.|..|+| +++||++|...-.. -..++.++|-++|
T Consensus 74 ~lL~~~~~~~~~~g~~i~n----------iD~tii~e~PKi~p-~~~~m~~~la~~L 119 (155)
T TIGR00151 74 VLLRHAVALIKEKGYRIGN----------VDITIIAQRPKLLP-HIPAMRENIAELL 119 (155)
T ss_pred HHHHHHHHHHHHcCCEEEE----------EEEEEEcCCCcchH-HHHHHHHHHHHHh
Confidence 3799999999999999999 45778877655332 3456666666555
No 168
>PRK00153 hypothetical protein; Validated
Probab=29.48 E-value=2.5e+02 Score=22.51 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCCCCCeeEEEEeCCeEEEEEE
Q 021208 181 LGDAIKYLKQLQEKVKILEEQANKKTIESVVFVNKTQLSDEGDNPNGAFNEALPEIEARFCDKSVLIRVH 250 (316)
Q Consensus 181 L~~Ai~YIk~Lq~~v~~L~~~~~~~~~es~~~~kk~~~~~~~~~s~~~~~~~~p~Vev~v~~~~v~I~I~ 250 (316)
+.+-++-.+++|+++++++++.+....+.. +..--|+|.+.|+.-+++|.
T Consensus 5 ~~~m~~qaq~~q~~~~~~q~~l~~~~~~~~--------------------s~~G~V~V~v~G~~~v~~i~ 54 (104)
T PRK00153 5 MQNLMKQAQQMQEKMQKMQEELAQMEVEGE--------------------AGGGLVKVTMTGKKEVKRVK 54 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEEEE--------------------ECCCeEEEEEecCceEEEEE
Confidence 456677788899999999998876543221 11225777777766555554
No 169
>PRK07431 aspartate kinase; Provisional
Probab=29.22 E-value=2.7e+02 Score=29.16 Aligned_cols=65 Identities=9% Similarity=0.136 Sum_probs=44.2
Q ss_pred EEEeCCeEEEEEEec---CCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 238 ARFCDKSVLIRVHCE---KRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 238 v~v~~~~v~I~I~c~---k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
+.+.++-..|.|... .++|++.+++.+|.+.|+.|+.... +-..+++. ++.. ..++.++.|+.+|
T Consensus 513 i~~~~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~~-----S~~~Is~v--V~~~---~~~~av~~Lh~~f 580 (587)
T PRK07431 513 VEDGPAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIAT-----SEIRTSCV--VAED---DGVKALQAVHQAF 580 (587)
T ss_pred EEEeCCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEeec-----cceEEEEE--EeHH---HHHHHHHHHHHHh
Confidence 444555567777664 5689999999999999999977652 22233333 2222 4677888888877
No 170
>PRK14621 hypothetical protein; Provisional
Probab=29.10 E-value=2.6e+02 Score=23.08 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021208 181 LGDAIKYLKQLQEKVKILEEQANKKT 206 (316)
Q Consensus 181 L~~Ai~YIk~Lq~~v~~L~~~~~~~~ 206 (316)
+.+.++-.+++|++.++++++++...
T Consensus 6 m~~mmkqaq~mQ~km~~~Q~eL~~~~ 31 (111)
T PRK14621 6 LGDMMKQIQQAGEKMQDVQKQLEKLV 31 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccE
Confidence 45667777888888888888877543
No 171
>PRK14622 hypothetical protein; Provisional
Probab=29.08 E-value=2.6e+02 Score=22.70 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021208 181 LGDAIKYLKQLQEKVKILEEQANKKT 206 (316)
Q Consensus 181 L~~Ai~YIk~Lq~~v~~L~~~~~~~~ 206 (316)
+.+..+-.+++|++.++++++++.+.
T Consensus 3 ~~~lmkqaq~mQ~~m~~~q~el~~~~ 28 (103)
T PRK14622 3 IQYLMRQAKKLEKAMADAKEKLAEIA 28 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccE
Confidence 34556667888888888888877543
No 172
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=29.08 E-value=1.4e+02 Score=27.95 Aligned_cols=39 Identities=18% Similarity=0.415 Sum_probs=34.4
Q ss_pred eEEEEEEecCCCCH-HHHHHHHHHhCCCeEEEEEEEEeCCe
Q 021208 244 SVLIRVHCEKRKGV-FEKIVAEIEKLHLTVINSSVMTFGSS 283 (316)
Q Consensus 244 ~v~I~I~c~k~~gl-l~~Il~~Le~lgL~Vv~asvs~~g~~ 283 (316)
++-|.+||-+.-|+ +...+.+++ .|.+++++++..+|++
T Consensus 183 ~~~i~~H~Hn~~Gla~AN~laA~~-aGa~~vd~s~~G~G~~ 222 (266)
T cd07944 183 DIKLGFHAHNNLQLALANTLEAIE-LGVEIIDATVYGMGRG 222 (266)
T ss_pred CceEEEEeCCCccHHHHHHHHHHH-cCCCEEEEecccCCCC
Confidence 57789999999998 888888885 8999999999999984
No 173
>PRK14629 hypothetical protein; Provisional
Probab=28.44 E-value=2.6e+02 Score=22.66 Aligned_cols=24 Identities=4% Similarity=0.317 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Q 021208 184 AIKYLKQLQEKVKILEEQANKKTI 207 (316)
Q Consensus 184 Ai~YIk~Lq~~v~~L~~~~~~~~~ 207 (316)
..+-.+++|++.++++++++....
T Consensus 8 ~mkqaq~mQ~km~~~Q~eL~~~~v 31 (99)
T PRK14629 8 FLKNMSSFKDNIDNIKKEISQIVV 31 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHhccEE
Confidence 456667888999999888876544
No 174
>PRK08210 aspartate kinase I; Reviewed
Probab=28.10 E-value=2.5e+02 Score=27.71 Aligned_cols=66 Identities=18% Similarity=0.322 Sum_probs=42.4
Q ss_pred EEEEeCCeEEEEEEec---CCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 237 EARFCDKSVLIRVHCE---KRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 237 ev~v~~~~v~I~I~c~---k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
.+.+.++-.+|.|... ..+|.+.+++++|.+.++.|+.... -+. .++++... . ..+..++.|+.+|
T Consensus 332 ~v~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~~--s~~---~is~vv~~--~---~~~~a~~~Lh~~f 400 (403)
T PRK08210 332 KPSVRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSAD--SHT---TIWVLVKE--E---DMEKAVNALHDAF 400 (403)
T ss_pred cEEEeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEec--CCC---EEEEEEcH--H---HHHHHHHHHHHHh
Confidence 3455566677777654 4679999999999999999985332 122 22233222 1 2566777777766
No 175
>PRK12483 threonine dehydratase; Reviewed
Probab=28.07 E-value=4e+02 Score=27.84 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=42.3
Q ss_pred eCCeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCH-HHHHHHHH
Q 021208 241 CDKSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTV-KDLVKNLH 309 (316)
Q Consensus 241 ~~~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~-~eL~~~L~ 309 (316)
.+..+.+.|.-+.++|-|.+++..|-.. +|+.......+..--.+.|..+..+. -.. ++|.++|+
T Consensus 342 ~~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~--~~~~~~i~~~l~ 407 (521)
T PRK12483 342 EQREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHPR--HDPRAQLLASLR 407 (521)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCCh--hhhHHHHHHHHH
Confidence 4677899999999999999999999877 66665554433333334455554432 122 45555554
No 176
>PLN02862 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Probab=27.56 E-value=1.6e+02 Score=27.23 Aligned_cols=46 Identities=20% Similarity=0.151 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 256 GVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 256 gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
-+|.++++.+++.|..|.| +++||++|...-.. -.+++.++|-.+|
T Consensus 134 ~lL~~a~~ll~~~G~~I~N----------vD~tII~q~PKi~p-~~~~m~~~La~lL 179 (216)
T PLN02862 134 VFIKEAVRLMHEAGYEIGN----------LDATLILQRPKLSP-HKEAIRSNLSKLL 179 (216)
T ss_pred HHHHHHHHHHHHcCCEEEE----------EEEEEEcCCCcchH-HHHHHHHHHHHHh
Confidence 3689999999999999999 56788888665322 4456666666555
No 177
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=27.41 E-value=1.8e+02 Score=21.13 Aligned_cols=41 Identities=20% Similarity=0.387 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 021208 152 RKRREKLSQRFIALSAIVPGLKKMDKASVLGDAIKYLKQLQEKVKILE 199 (316)
Q Consensus 152 r~RR~~in~~~~~LrslvP~~~k~dKasiL~~Ai~YIk~Lq~~v~~L~ 199 (316)
|.-|=.....+..+..++ ..++ .++|.+||+.+-..++.+.
T Consensus 17 R~~RHD~~NhLqvI~gll-qlg~------~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 17 RAQRHDFLNHLQVIYGLL-QLGK------YEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTT-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH-HCCC------HHHHHHHHHHHHHHHHHHH
Confidence 555767777788888876 2333 5679999999999888774
No 178
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.15 E-value=1.9e+02 Score=19.11 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=21.8
Q ss_pred cCCCCHHHHHHHHHHhCCCeEEEEEE
Q 021208 252 EKRKGVFEKIVAEIEKLHLTVINSSV 277 (316)
Q Consensus 252 ~k~~gll~~Il~~Le~lgL~Vv~asv 277 (316)
+..+|.+.+++.+|.+.|+.|...+.
T Consensus 9 ~~~~~~~~~i~~~L~~~~i~i~~i~~ 34 (61)
T cd04891 9 PDKPGVAAKIFSALAEAGINVDMIVQ 34 (61)
T ss_pred CCCCcHHHHHHHHHHHcCCcEEEEEE
Confidence 55689999999999999999866544
No 179
>PRK08639 threonine dehydratase; Validated
Probab=27.03 E-value=3.5e+02 Score=27.08 Aligned_cols=68 Identities=7% Similarity=0.085 Sum_probs=42.9
Q ss_pred eCCeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEE-eCCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 021208 241 CDKSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMT-FGSSVLDVTIIAQMDVEFNMTVKDLVKNLHS 310 (316)
Q Consensus 241 ~~~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~-~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~ 310 (316)
.+..+.+++.-+.++|-|.++++.+-..+-+|+....-. .+...-.+.|..+..+. -..++|.+.|++
T Consensus 333 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~~--~h~~~i~~~L~~ 401 (420)
T PRK08639 333 EGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKDA--EDYDGLIERMEA 401 (420)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCCH--HHHHHHHHHHHH
Confidence 467789999999999999999996655555777655432 12222234455555442 234556666554
No 180
>PRK14624 hypothetical protein; Provisional
Probab=26.66 E-value=3.2e+02 Score=22.77 Aligned_cols=27 Identities=11% Similarity=0.358 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Q 021208 181 LGDAIKYLKQLQEKVKILEEQANKKTI 207 (316)
Q Consensus 181 L~~Ai~YIk~Lq~~v~~L~~~~~~~~~ 207 (316)
+.+..+-.+++|++.++++++++....
T Consensus 8 m~~~mkqAq~mQ~km~~~QeeL~~~~v 34 (115)
T PRK14624 8 MSEALSNMGNIREKMEEVKKRIASIRV 34 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEE
Confidence 667777888899999999888876543
No 181
>PRK00341 hypothetical protein; Provisional
Probab=26.55 E-value=1.9e+02 Score=22.84 Aligned_cols=63 Identities=16% Similarity=0.139 Sum_probs=41.7
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEE---EeCCeEEEEEEEEEecCCcccCHHHHHHHHH
Q 021208 244 SVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVM---TFGSSVLDVTIIAQMDVEFNMTVKDLVKNLH 309 (316)
Q Consensus 244 ~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs---~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~ 309 (316)
++-|||-....+++...|++.++.+. ++-...+. .-+|+...++|.+.+.+. --+++|.+.|.
T Consensus 17 ~~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~s~--~q~~~iy~~L~ 82 (91)
T PRK00341 17 DYPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVATDE--DQLQDINSALR 82 (91)
T ss_pred CccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEECCH--HHHHHHHHHHh
Confidence 47888999899999999999998765 54434332 245666667877777554 23344444443
No 182
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=26.28 E-value=2.1e+02 Score=19.33 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEE
Q 021208 253 KRKGVFEKIVAEIEKLHLTVINSS 276 (316)
Q Consensus 253 k~~gll~~Il~~Le~lgL~Vv~as 276 (316)
..+|++.+++.+|.+.++.|.-.+
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 12 SHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEE
Confidence 457999999999999999987665
No 183
>PRK03762 hypothetical protein; Provisional
Probab=25.85 E-value=3.3e+02 Score=22.16 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021208 181 LGDAIKYLKQLQEKVKILEEQANKKT 206 (316)
Q Consensus 181 L~~Ai~YIk~Lq~~v~~L~~~~~~~~ 206 (316)
++.-.+-.+++|+++++++++.+.+.
T Consensus 7 ~~~m~kqaqkmQ~km~~~Q~el~~~~ 32 (103)
T PRK03762 7 FSKLGEMLEQMQKKAKQLEEENANKE 32 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccE
Confidence 34455667889999999988877543
No 184
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=25.22 E-value=1.9e+02 Score=26.20 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=32.5
Q ss_pred EEEEEEecCCCCH-HHHHHHHHHhCCCeEEEEEEEEeCC
Q 021208 245 VLIRVHCEKRKGV-FEKIVAEIEKLHLTVINSSVMTFGS 282 (316)
Q Consensus 245 v~I~I~c~k~~gl-l~~Il~~Le~lgL~Vv~asvs~~g~ 282 (316)
+.|.+||-+..|+ +...+.+++ .|.+.+++++..+|+
T Consensus 191 ~~~~~H~Hn~~gla~an~laA~~-aG~~~id~s~~G~G~ 228 (265)
T cd03174 191 VPLGLHTHNTLGLAVANSLAALE-AGADRVDGSVNGLGE 228 (265)
T ss_pred CeEEEEeCCCCChHHHHHHHHHH-cCCCEEEeccccccc
Confidence 7888999999998 888888885 899999999988884
No 185
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.09 E-value=1.5e+02 Score=23.08 Aligned_cols=65 Identities=14% Similarity=0.252 Sum_probs=42.4
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEE--eCCeEEEEE-EEEEecCCcccC----HHHHHHHHHHHH
Q 021208 247 IRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMT--FGSSVLDVT-IIAQMDVEFNMT----VKDLVKNLHSAF 312 (316)
Q Consensus 247 I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~--~g~~~l~~t-i~aq~~~~~~ls----~~eL~~~L~~al 312 (316)
|+++..-|+-++.++.-||..|+.-|-+|.|.. .+++--.+. +..-..+++ ++ -..++..++..+
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~-~~~~~~r~~i~drv~~~l 74 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRL-KLGGRQRSKVVDRVTKTL 74 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCcc-ccchHHHHHHHHHHHHHH
Confidence 345555678889999999999999999999974 455544432 333333334 44 445666665554
No 186
>PF04455 Saccharop_dh_N: LOR/SDH bifunctional enzyme conserved region ; InterPro: IPR007545 Lysine-oxoglutarate reductase/Saccharopine dehydrogenase (LOR/SDH) is a bifunctional enzyme. This conserved region is commonly found immediately N-terminal to saccharopine dehydrogenase conserved region (IPR005097 from INTERPRO) in eukaryotes [, ].; PDB: 3C2Q_B 3MGJ_A.
Probab=25.07 E-value=2.5e+02 Score=22.92 Aligned_cols=56 Identities=9% Similarity=0.210 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHhCC--CeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHH
Q 021208 254 RKGVFEKIVAEIEKLH--LTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSA 311 (316)
Q Consensus 254 ~~gll~~Il~~Le~lg--L~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~a 311 (316)
..|++.++|..+...| ++|.++.+-.-.+...++.+.+..++ .-.+++|...|++.
T Consensus 14 DSgil~~vLD~I~d~GG~F~i~~~~vG~~~~d~S~a~l~V~a~d--~~~L~~Il~~L~~l 71 (103)
T PF04455_consen 14 DSGILNRVLDIIMDMGGDFEILEFDVGKSKDDTSYARLQVSAPD--EEHLDEILDELHQL 71 (103)
T ss_dssp TSSHHHHHHHHHHHTT-EEEEEEEE--SSTTS-EEEEEEEEESS--HHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhcCCCEEEEEEEeCCCCCCceeEEEEEecCC--HHHHHHHHHHHHHH
Confidence 4799999999999998 78999998765555554444444333 34566677776653
No 187
>PHA02568 J baseplate assembly protein; Provisional
Probab=25.03 E-value=4.7e+02 Score=25.27 Aligned_cols=74 Identities=9% Similarity=0.152 Sum_probs=50.7
Q ss_pred eCCeEEEEEEecCCC-----CHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHh
Q 021208 241 CDKSVLIRVHCEKRK-----GVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQL 314 (316)
Q Consensus 241 ~~~~v~I~I~c~k~~-----gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~~ 314 (316)
.++.|.|-|...... .++..|-..|...++.-+...++...-..+.|.|.+.+--......+++.+.++.+|..
T Consensus 164 ~pGtV~V~il~~~~~G~ps~~Ll~~V~~~l~~e~vrPl~d~VtV~sa~~v~~~I~a~l~l~~g~~~~~v~~~a~~~l~~ 242 (300)
T PHA02568 164 APAEVVVTVLSREGNGTASEDLLAAVRAALNREDVRPVTDRVTVQSATIVPYQIRATLYLYPGPDSEVILAAAEARLQA 242 (300)
T ss_pred CCCEEEEEEEcCCCCCCCCHHHHHHHHHHhcccccCCCCCEEEEECCEEEEEEEEEEEEEcCCCChHHHHHHHHHHHHH
Confidence 356787877654333 36788888887777777888888877777777777665533334566777777766654
No 188
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=24.68 E-value=2.7e+02 Score=28.73 Aligned_cols=62 Identities=13% Similarity=0.185 Sum_probs=42.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEe--CC---eEEEEEEEEEecCCcccCHHHHHHHHHHH
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTF--GS---SVLDVTIIAQMDVEFNMTVKDLVKNLHSA 311 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~--g~---~~l~~ti~aq~~~~~~ls~~eL~~~L~~a 311 (316)
.+.+...+ .|-|.++|..++++++.|.+-..-+. .. .-++++|.+.++. ..+.++++.|++.
T Consensus 41 ~~~~~~~~-~g~L~~~l~~f~~~~inl~hiEsr~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~l~~~ 107 (457)
T TIGR01269 41 QFYIRTKE-ISSLHRILKYIETFKLNLVHFETRPTRTLSNADVDYSCLITLEANE---INMSLLIESLRGN 107 (457)
T ss_pred EEEeccCc-chhHHHHHHHHHHcCCcEEEeecCCccccCCCCCceEEEEEEeccH---hhHHHHHHHHHhh
Confidence 44444443 88999999999999999988776442 21 3456666665443 4577888888764
No 189
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=24.13 E-value=4e+02 Score=27.26 Aligned_cols=67 Identities=21% Similarity=0.323 Sum_probs=46.6
Q ss_pred EEEEeCCeEEEEEEe---cCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHHH
Q 021208 237 EARFCDKSVLIRVHC---EKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQ 313 (316)
Q Consensus 237 ev~v~~~~v~I~I~c---~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~ 313 (316)
++.+..+-.+|.|.. ...+|...+++++|.+.++.++..+.+ ++.|.+-+++. ..+..++.|+++|-
T Consensus 376 ~v~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~issS-------e~~Is~vV~~~---~~~~av~~LH~~~~ 445 (447)
T COG0527 376 EVEVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMISSS-------EISISFVVDEK---DAEKAVRALHEAFF 445 (447)
T ss_pred eEEeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEEcC-------CceEEEEEccH---HHHHHHHHHHHHHh
Confidence 455556666777654 345799999999999999999886621 23344444444 56778888888874
No 190
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=24.05 E-value=3.1e+02 Score=20.45 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEE
Q 021208 253 KRKGVFEKIVAEIEKLHLTVINSS 276 (316)
Q Consensus 253 k~~gll~~Il~~Le~lgL~Vv~as 276 (316)
..+|.+.+|++.|.+.|+.|--..
T Consensus 13 ~~~g~~~~If~~la~~~I~vd~I~ 36 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVDLIS 36 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEEEEE
Confidence 357999999999999998876554
No 191
>PLN02551 aspartokinase
Probab=24.05 E-value=4.6e+02 Score=27.32 Aligned_cols=68 Identities=21% Similarity=0.317 Sum_probs=44.0
Q ss_pred EEEeCCeEEEEEEec--CCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHHH
Q 021208 238 ARFCDKSVLIRVHCE--KRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQ 313 (316)
Q Consensus 238 v~v~~~~v~I~I~c~--k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~ 313 (316)
+.+..+-..|.|... ..+|++.+++.+|.+.|+.|.-.+. |.+-.+++++.. +. ..+..++.|+..|-
T Consensus 439 V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsq---gaSeinIS~vV~--~~---d~~~Av~aLH~~Ff 508 (521)
T PLN02551 439 VNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQ---GASKVNISLIVN--DD---EAEQCVRALHSAFF 508 (521)
T ss_pred EEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEe---cCCCcEEEEEEe--HH---HHHHHHHHHHHHHh
Confidence 444455666766654 3579999999999999999966442 222233333332 22 45678888888773
No 192
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=23.93 E-value=3.5e+02 Score=26.57 Aligned_cols=65 Identities=12% Similarity=0.281 Sum_probs=41.1
Q ss_pred EEEeCCeEEEEEEe---cCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 238 ARFCDKSVLIRVHC---EKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 238 v~v~~~~v~I~I~c---~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
+.+..+-..|.|.. ...+|.+.+++++|.+.|+.|.... +-+. .++++... . ..+..++.|++.|
T Consensus 331 i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~--~s~~---~is~vv~~--~---d~~~av~~Lh~~f 398 (401)
T TIGR00656 331 VEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIG--SSET---NISFLVDE--K---DAEKAVRKLHEVF 398 (401)
T ss_pred EEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cCCC---EEEEEEeH--H---HHHHHHHHHHHHH
Confidence 34444555666655 3568999999999999999998543 2222 23333322 1 3466777777765
No 193
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=23.57 E-value=2.6e+02 Score=27.44 Aligned_cols=38 Identities=21% Similarity=0.386 Sum_probs=33.4
Q ss_pred EEEEEEecCCCCH-HHHHHHHHHhCCCeEEEEEEEEeCCe
Q 021208 245 VLIRVHCEKRKGV-FEKIVAEIEKLHLTVINSSVMTFGSS 283 (316)
Q Consensus 245 v~I~I~c~k~~gl-l~~Il~~Le~lgL~Vv~asvs~~g~~ 283 (316)
+-|.+||-+.-|+ +...+.+++. |.+.+++++..+|.+
T Consensus 185 ~~l~~H~Hnd~GlA~AN~laA~~a-Ga~~vd~s~~GlGer 223 (363)
T TIGR02090 185 LPISVHCHNDFGLATANSIAGVKA-GAEQVHVTVNGIGER 223 (363)
T ss_pred ceEEEEecCCCChHHHHHHHHHHC-CCCEEEEEeeccccc
Confidence 6789999999997 8899999975 999999999988864
No 194
>PRK14625 hypothetical protein; Provisional
Probab=23.09 E-value=3.8e+02 Score=22.06 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCCCCCeeEEEEeCCeEEEEEE
Q 021208 181 LGDAIKYLKQLQEKVKILEEQANKKTIESVVFVNKTQLSDEGDNPNGAFNEALPEIEARFCDKSVLIRVH 250 (316)
Q Consensus 181 L~~Ai~YIk~Lq~~v~~L~~~~~~~~~es~~~~kk~~~~~~~~~s~~~~~~~~p~Vev~v~~~~v~I~I~ 250 (316)
+.+.++-.+.+|++.++++++.+....+.. ...--|+|.+.|+.-+++|.
T Consensus 4 m~~mmkqaq~mQ~km~~~Q~el~~~~v~g~--------------------sggG~VkV~~~G~~~v~~I~ 53 (109)
T PRK14625 4 LGGLMKQAQAMQQKLADAQARLAETTVEGT--------------------SGGGMVTVTLMGNGELVRVL 53 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEEEE--------------------ECCCeEEEEEecCceEEEEE
Confidence 456677778899999999988876543221 01125677777776555554
No 195
>PRK14637 hypothetical protein; Provisional
Probab=23.03 E-value=4.1e+02 Score=23.00 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEEEeCC-eEEEEEEEEEecCCcccCHHHHHH
Q 021208 253 KRKGVFEKIVAEIEKLHLTVINSSVMTFGS-SVLDVTIIAQMDVEFNMTVKDLVK 306 (316)
Q Consensus 253 k~~gll~~Il~~Le~lgL~Vv~asvs~~g~-~~l~~ti~aq~~~~~~ls~~eL~~ 306 (316)
+.-|....+-.+++++|++++...+..-|+ .++.++| +....++++|..+
T Consensus 6 ~~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~I----D~~~gV~iddC~~ 56 (151)
T PRK14637 6 KDLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVI----YSAGGVGLDDCAR 56 (151)
T ss_pred ccccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEE----ECCCCCCHHHHHH
Confidence 345778888889999999999999987655 4665544 2334477776443
No 196
>PRK07431 aspartate kinase; Provisional
Probab=22.88 E-value=3.2e+02 Score=28.57 Aligned_cols=66 Identities=15% Similarity=0.235 Sum_probs=44.6
Q ss_pred EEEEeCCeEEEEEEec---CCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 237 EARFCDKSVLIRVHCE---KRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 237 ev~v~~~~v~I~I~c~---k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
++.+..+-.+|.|.+. +.+|++.+++.+|.+.++.|+..+ + .+ ..++++.. +. ..+..++.|+..|
T Consensus 341 ~i~~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s-Se--~~Is~vv~--~~---d~~~av~~Lh~~f 409 (587)
T PRK07431 341 EVLVETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T-SE--VKVSCVID--AE---DGDKALRAVCEAF 409 (587)
T ss_pred cEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c-CC--CEEEEEEc--HH---HHHHHHHHHHHHh
Confidence 3556667778888775 457999999999999999997766 1 12 22222222 22 3567778888776
No 197
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=22.38 E-value=5e+02 Score=25.48 Aligned_cols=43 Identities=14% Similarity=0.224 Sum_probs=32.8
Q ss_pred eeE-EEEeCCeEEEEEE---ecCCCCHHHHHHHHHHhCCCeEEEEEE
Q 021208 235 EIE-ARFCDKSVLIRVH---CEKRKGVFEKIVAEIEKLHLTVINSSV 277 (316)
Q Consensus 235 ~Ve-v~v~~~~v~I~I~---c~k~~gll~~Il~~Le~lgL~Vv~asv 277 (316)
.|. +....+-.+|.|. ...++|.+.+|+.+|.+.|+.|...+.
T Consensus 250 ~v~~I~~~~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~ 296 (401)
T TIGR00656 250 LVKGIALRKNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQ 296 (401)
T ss_pred ceEEEEEECCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEc
Confidence 344 4455667788887 456689999999999999999976543
No 198
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=22.31 E-value=2.3e+02 Score=26.91 Aligned_cols=38 Identities=13% Similarity=0.061 Sum_probs=32.1
Q ss_pred EEEEEEecCCCCH-HHHHHHHHHhCCCeEEEEEEEEeCCe
Q 021208 245 VLIRVHCEKRKGV-FEKIVAEIEKLHLTVINSSVMTFGSS 283 (316)
Q Consensus 245 v~I~I~c~k~~gl-l~~Il~~Le~lgL~Vv~asvs~~g~~ 283 (316)
+-|.+||-+..|+ +...+.+++. |.+.+++++..+|++
T Consensus 204 ~~l~~H~Hn~~Gla~AN~laA~~a-G~~~vd~sv~GlGe~ 242 (279)
T cd07947 204 ENLEWHGHNDFYKAVANAVAAWLY-GASWVNCTLLGIGER 242 (279)
T ss_pred ceEEEEecCCCChHHHHHHHHHHh-CCCEEEEeccccccc
Confidence 4688999999997 8888888875 999999999988843
No 199
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=22.27 E-value=2.8e+02 Score=19.26 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=20.9
Q ss_pred ecCCCCHHHHHHHHHHhCCCeEEEE
Q 021208 251 CEKRKGVFEKIVAEIEKLHLTVINS 275 (316)
Q Consensus 251 c~k~~gll~~Il~~Le~lgL~Vv~a 275 (316)
.+..+|.+.+++++|.+.|+.|.-.
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i 33 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMI 33 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEE
Confidence 3566899999999999999998543
No 200
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=21.94 E-value=4.7e+02 Score=24.03 Aligned_cols=64 Identities=11% Similarity=0.092 Sum_probs=42.0
Q ss_pred CCeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 021208 242 DKSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHS 310 (316)
Q Consensus 242 ~~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~ 310 (316)
.+...+.|.|... -+.++++.+++.++.+.+.++....+.. .+++...+.. ..+..++.+.|..
T Consensus 142 ~~~~~~~i~~~~~--~~~~i~~~l~~~~i~i~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~l~~~L~~ 205 (215)
T PRK09977 142 NKHYHLQLTLVNG--NVVSMLDWFKQQKIKTDLVSLQENEDHE-VVAIDITLHA--TTSIEDLYRLLKG 205 (215)
T ss_pred cCcEEEEEEEccc--cHHHHHHHHHHcCceEEEEEEEecCCCc-EEEEEEEECC--CCCHHHHHHHHhc
Confidence 3445677777644 3688999999999999998876543322 1344455543 4567777777653
No 201
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=21.70 E-value=3.4e+02 Score=24.09 Aligned_cols=63 Identities=14% Similarity=0.271 Sum_probs=46.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeC-CeEEEEEEEEEecCCcccCHHHHHHHHHHH
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFG-SSVLDVTIIAQMDVEFNMTVKDLVKNLHSA 311 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g-~~~l~~ti~aq~~~~~~ls~~eL~~~L~~a 311 (316)
.+.+.-.+.+|.|.++...+-..|+.+-+-.+.... ....++||++.- ++ -.++.+++-|...
T Consensus 6 ilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g-~~--~~~EQi~kQL~kL 69 (163)
T COG0440 6 ILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG-DE--QVLEQIIKQLNKL 69 (163)
T ss_pred EEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC-Cc--chHHHHHHHHHhh
Confidence 456777889999999999999999998887777543 337778887765 22 3566676666543
No 202
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=21.57 E-value=91 Score=27.22 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=21.5
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHhcc
Q 021208 142 SNTQDHIIAERKRREKLSQRFIALSAI 168 (316)
Q Consensus 142 ~~~~~h~~~Er~RR~~in~~~~~Lrsl 168 (316)
..+.+....||+||.--...|.-||..
T Consensus 10 kErEnnk~RERrRRAIaakIfaGLR~~ 36 (150)
T PF05687_consen 10 KERENNKRRERRRRAIAAKIFAGLRAH 36 (150)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778889999997777778888876
No 203
>PRK14646 hypothetical protein; Provisional
Probab=21.40 E-value=5.4e+02 Score=22.29 Aligned_cols=43 Identities=12% Similarity=0.181 Sum_probs=28.5
Q ss_pred HHHHHHHhCCCeEEEEEEEEeCC-eEEEEEEEEEecCCcccCHHHH
Q 021208 260 KIVAEIEKLHLTVINSSVMTFGS-SVLDVTIIAQMDVEFNMTVKDL 304 (316)
Q Consensus 260 ~Il~~Le~lgL~Vv~asvs~~g~-~~l~~ti~aq~~~~~~ls~~eL 304 (316)
-+-..++++|++++...+..-|+ .++.+.| --+++..++++|.
T Consensus 12 li~p~~~~~G~eLvdve~~~~~~~~~LrV~I--Dk~~g~gVtldDC 55 (155)
T PRK14646 12 LLEKVANEFDLKICSLNIQTNQNPIVIKIII--KKTNGDDISLDDC 55 (155)
T ss_pred HHHHHHHHcCCEEEEEEEEeCCCCeEEEEEE--ECCCCCCccHHHH
Confidence 34456789999999999987654 5565444 2232345777775
No 204
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=21.39 E-value=6.3e+02 Score=23.05 Aligned_cols=58 Identities=21% Similarity=0.301 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhC--CCeEEEEEEEEeCCeEEEEEEEEEecCCccc-CHHHHHHHHHHHHHh
Q 021208 257 VFEKIVAEIEKL--HLTVINSSVMTFGSSVLDVTIIAQMDVEFNM-TVKDLVKNLHSAFQL 314 (316)
Q Consensus 257 ll~~Il~~Le~l--gL~Vv~asvs~~g~~~l~~ti~aq~~~~~~l-s~~eL~~~L~~al~~ 314 (316)
...++.+.+++. ..+|.+..+-..|...+.+.++.+++.+..+ ..+++.+++++.+.+
T Consensus 206 ~~~~i~~~i~~~~~v~~v~~~~~~~~g~~~~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~~ 266 (284)
T PF01545_consen 206 LVEKIRRIIESVPGVIEVHDLRVWQVGRNKYVVEIHVQVDPDMSVEEAHEIRERIEKRLRE 266 (284)
T ss_dssp HHHHHHHHHHHTSS-SEEEEEEEEEETT-EEEEEEEEEETTTSBHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHhhccCCceEeccceEEEEecCCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 346777777544 4899999999999966667888888887544 355677777777764
No 205
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.35 E-value=7.1e+02 Score=24.82 Aligned_cols=26 Identities=31% Similarity=0.551 Sum_probs=13.1
Q ss_pred hhhcccccccccccchh-hhhhcCcccc
Q 021208 20 MNQWHMMNSIDEFNLLP-IAAAFGENLQ 46 (316)
Q Consensus 20 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 46 (316)
+|.|+ -.+-+---+++ |.++|++...
T Consensus 114 Lh~W~-~pssdLv~Liq~l~a~f~~~pP 140 (365)
T KOG2391|consen 114 LHNWD-PPSSDLVGLIQELIAAFSEDPP 140 (365)
T ss_pred hccCC-CccchHHHHHHHHHHHhcCCCc
Confidence 37886 22222111333 4577888664
No 206
>PRK00907 hypothetical protein; Provisional
Probab=21.32 E-value=3.7e+02 Score=21.41 Aligned_cols=63 Identities=8% Similarity=0.035 Sum_probs=40.4
Q ss_pred CeEEEEEEecCCCCHHHHHHHHHHhCCCeE----EEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHH
Q 021208 243 KSVLIRVHCEKRKGVFEKIVAEIEKLHLTV----INSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNL 308 (316)
Q Consensus 243 ~~v~I~I~c~k~~gll~~Il~~Le~lgL~V----v~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L 308 (316)
.++-|||-...++++...|++.++.+.-++ +...-| -+|+...+|+...+.+. --++.|.+.|
T Consensus 16 c~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~S-s~GkY~Svtv~i~ats~--eQld~iY~~L 82 (92)
T PRK00907 16 GTFELSAMGTAERGLETELPRLLAATGVELLQERISWKHS-SSGKYVSVRIGFRAESR--EQYDAAHQAL 82 (92)
T ss_pred CCCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccC-CCCEEEEEEEEEEECCH--HHHHHHHHHH
Confidence 468899999999999999999999875433 222223 34555557766655443 2234444444
No 207
>PLN02705 beta-amylase
Probab=20.88 E-value=1.3e+02 Score=32.19 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=20.6
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHhcc
Q 021208 141 LSNTQDHIIAERKRREKLSQRFIALSAI 168 (316)
Q Consensus 141 ~~~~~~h~~~Er~RR~~in~~~~~Lrsl 168 (316)
...+......||+||.--...|.-||..
T Consensus 82 ~~e~e~~~~rer~rrai~~ki~aglr~~ 109 (681)
T PLN02705 82 EKEKERTKLRERHRRAITSRMLAGLRQY 109 (681)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 3467788899999996666666666664
No 208
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=20.79 E-value=2.4e+02 Score=26.56 Aligned_cols=17 Identities=41% Similarity=0.536 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhh
Q 021208 188 LKQLQEKVKILEEQANK 204 (316)
Q Consensus 188 Ik~Lq~~v~~L~~~~~~ 204 (316)
||.++.||++||.++..
T Consensus 57 L~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 57 LKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 68899999999998743
No 209
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=20.77 E-value=2.4e+02 Score=21.47 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=20.3
Q ss_pred HHHHHHHHhCCCeEEEEEEEEeCC
Q 021208 259 EKIVAEIEKLHLTVINSSVMTFGS 282 (316)
Q Consensus 259 ~~Il~~Le~lgL~Vv~asvs~~g~ 282 (316)
..|.++|.++|+.|..+.....++
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~ 25 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRD 25 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccC
Confidence 358899999999999998776665
No 210
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=20.65 E-value=2.8e+02 Score=30.26 Aligned_cols=59 Identities=12% Similarity=0.005 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHh
Q 021208 256 GVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQL 314 (316)
Q Consensus 256 gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~~ 314 (316)
.+-.+|.++|+++|+.|.++.+....+.-+.+.+.+....+.+...+++..-|..++..
T Consensus 465 ~~e~~i~~~L~~~gi~v~~v~~~~~~~g~~~I~l~~~~~~g~~~~~k~i~~~ls~~~g~ 523 (764)
T TIGR02865 465 LLEEKIIRALNKNGIPYEDVLAYNTEGGNIDVELTIAACGGRGECEKKIAPIISEVTGE 523 (764)
T ss_pred HHHHHHHHHHHHCCCeeEEEEEEEcCCCcEEEEEEEcCCCCccchHHHHHHHHHHHhCC
Confidence 34567999999999999999998776655666666666667788899998888877653
No 211
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=20.65 E-value=1.6e+02 Score=23.08 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 021208 181 LGDAIKYLKQLQEKVKILEEQANK 204 (316)
Q Consensus 181 L~~Ai~YIk~Lq~~v~~L~~~~~~ 204 (316)
+..||+-|.-||-+|++|+++...
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~ 36 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNS 36 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999987554
No 212
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.26 E-value=4e+02 Score=20.31 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=23.4
Q ss_pred EEEEEe---cCCCCHHHHHHHHHHhCCCeEEEEE
Q 021208 246 LIRVHC---EKRKGVFEKIVAEIEKLHLTVINSS 276 (316)
Q Consensus 246 ~I~I~c---~k~~gll~~Il~~Le~lgL~Vv~as 276 (316)
+|.|.. +..+|.+.+|+++|.+.|+.|--..
T Consensus 3 ~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~ 36 (78)
T cd04933 3 MLDITSTRMLGQYGFLAKVFSIFETLGISVDVVA 36 (78)
T ss_pred EEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEE
Confidence 455443 4558999999999999998876553
No 213
>PRK08841 aspartate kinase; Validated
Probab=20.13 E-value=3.5e+02 Score=26.97 Aligned_cols=65 Identities=14% Similarity=0.191 Sum_probs=43.2
Q ss_pred EEEeCCeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 238 ARFCDKSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 238 v~v~~~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
+.+.++-.+|.|.....+|++.+++.+|.+.++.|+.... +. ..++++.. . -..+..++.|+..|
T Consensus 312 i~~~~~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~~---s~--~~is~vv~--~---~~~~~av~~lH~~f 376 (392)
T PRK08841 312 IRNSESVSLLTLVGLEANGMVEHACNLLAQNGIDVRQCST---EP--QSSMLVLD--P---ANVDRAANILHKTY 376 (392)
T ss_pred EEEeCCEEEEEEECCCChHHHHHHHHHHHhCCCCEEEEEC---CC--cEEEEEEe--H---HHHHHHHHHHHHHH
Confidence 3444555678887777799999999999999999966552 22 23333322 2 24556777777665
No 214
>PRK06635 aspartate kinase; Reviewed
Probab=20.05 E-value=4.6e+02 Score=25.74 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=29.9
Q ss_pred EEEeCCeEEEEEEe---cCCCCHHHHHHHHHHhCCCeEEEEE
Q 021208 238 ARFCDKSVLIRVHC---EKRKGVFEKIVAEIEKLHLTVINSS 276 (316)
Q Consensus 238 v~v~~~~v~I~I~c---~k~~gll~~Il~~Le~lgL~Vv~as 276 (316)
+.+..+-.+|.|.+ ...+|.+.+|+++|.+.|+.|.-.+
T Consensus 334 i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 334 VTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred EEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence 34455666777765 4568999999999999999997754
Done!