Query 021208
Match_columns 316
No_of_seqs 247 out of 1290
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 14:19:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021208.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021208hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 2.4E-16 8.2E-21 122.3 6.2 63 143-205 6-69 (82)
2 1hlo_A Protein (transcription 99.5 7.8E-15 2.7E-19 113.1 5.7 64 142-205 11-76 (80)
3 1nkp_B MAX protein, MYC proto- 99.5 9.8E-15 3.4E-19 113.2 6.0 62 144-205 3-66 (83)
4 1an4_A Protein (upstream stimu 99.5 3.5E-15 1.2E-19 110.6 3.0 54 142-195 4-63 (65)
5 4h10_B Circadian locomoter out 99.5 1.1E-14 3.8E-19 109.8 5.5 58 142-199 7-65 (71)
6 1a0a_A BHLH, protein (phosphat 99.5 2.3E-15 7.9E-20 111.2 1.2 54 143-196 2-62 (63)
7 4ati_A MITF, microphthalmia-as 99.5 2.4E-14 8.3E-19 118.2 7.2 61 142-202 26-90 (118)
8 1nkp_A C-MYC, MYC proto-oncoge 99.5 3.4E-14 1.2E-18 111.6 6.5 62 143-204 6-70 (88)
9 1nlw_A MAD protein, MAX dimeri 99.4 1.6E-13 5.4E-18 105.9 7.5 62 144-205 2-66 (80)
10 4h10_A ARYL hydrocarbon recept 99.4 3.4E-14 1.2E-18 107.9 2.1 52 142-193 8-63 (73)
11 3u5v_A Protein MAX, transcript 99.4 2.3E-13 7.7E-18 104.1 3.5 58 142-199 4-65 (76)
12 2ql2_B Neurod1, neurogenic dif 99.1 3.6E-11 1.2E-15 87.8 4.8 54 143-196 2-58 (60)
13 1mdy_A Protein (MYOD BHLH doma 99.1 2.7E-11 9.2E-16 90.6 4.0 54 142-195 11-66 (68)
14 4f3l_A Mclock, circadian locom 98.9 1E-09 3.5E-14 105.1 5.1 54 142-195 11-65 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.7 4.7E-09 1.6E-13 101.6 3.7 53 142-194 12-68 (387)
16 2lfh_A DNA-binding protein inh 98.6 9.2E-09 3.1E-13 76.4 1.1 45 149-193 20-67 (68)
17 4ath_A MITF, microphthalmia-as 98.5 2.3E-07 7.9E-12 71.5 6.1 48 155-202 4-55 (83)
18 4aya_A DNA-binding protein inh 98.1 5.2E-06 1.8E-10 65.8 5.7 48 150-197 32-82 (97)
19 1zpv_A ACT domain protein; str 97.1 0.01 3.5E-07 44.7 12.0 68 244-314 5-72 (91)
20 1u8s_A Glycine cleavage system 96.4 0.02 6.9E-07 49.4 10.2 66 244-313 6-71 (192)
21 2nyi_A Unknown protein; protei 96.1 0.034 1.2E-06 48.4 10.0 50 244-294 5-54 (195)
22 2ko1_A CTR148A, GTP pyrophosph 95.9 0.033 1.1E-06 41.2 7.8 63 244-309 5-67 (88)
23 2nyi_A Unknown protein; protei 95.4 0.1 3.6E-06 45.3 10.3 69 244-315 93-166 (195)
24 1u8s_A Glycine cleavage system 95.3 0.19 6.6E-06 43.1 11.6 71 243-315 92-169 (192)
25 3p96_A Phosphoserine phosphata 92.8 0.41 1.4E-05 45.7 9.2 69 243-313 11-79 (415)
26 3n0v_A Formyltetrahydrofolate 92.4 0.83 2.8E-05 42.3 10.4 69 243-314 7-77 (286)
27 3o1l_A Formyltetrahydrofolate 91.9 1.4 4.7E-05 41.2 11.5 70 243-314 21-92 (302)
28 3obi_A Formyltetrahydrofolate 91.5 1.7 5.8E-05 40.3 11.6 70 243-314 5-76 (288)
29 3lou_A Formyltetrahydrofolate 90.1 1.9 6.7E-05 40.0 10.6 71 243-314 9-82 (292)
30 2jhe_A Transcription regulator 90.0 0.71 2.4E-05 37.9 6.8 36 246-281 2-37 (190)
31 2f1f_A Acetolactate synthase i 88.6 2.3 7.8E-05 36.2 9.0 62 245-309 4-66 (164)
32 1y7p_A Hypothetical protein AF 88.5 1.4 4.7E-05 39.6 7.8 62 244-310 4-69 (223)
33 3nrb_A Formyltetrahydrofolate 87.1 3.1 0.00011 38.5 9.6 65 243-311 6-72 (287)
34 2pc6_A Probable acetolactate s 85.6 3.2 0.00011 35.4 8.3 62 245-309 5-67 (165)
35 2fgc_A Acetolactate synthase, 84.0 6.2 0.00021 34.6 9.5 62 245-309 30-92 (193)
36 2f06_A Conserved hypothetical 62.1 35 0.0012 27.1 8.2 57 246-310 74-130 (144)
37 2wt7_A Proto-oncogene protein 51.2 35 0.0012 24.0 5.6 41 151-204 1-41 (63)
38 2re1_A Aspartokinase, alpha an 48.6 43 0.0015 27.5 6.8 65 238-312 97-164 (167)
39 2dt9_A Aspartokinase; protein- 47.9 38 0.0013 27.9 6.3 66 237-312 88-156 (167)
40 2f06_A Conserved hypothetical 47.2 64 0.0022 25.5 7.4 37 246-282 8-44 (144)
41 3s1t_A Aspartokinase; ACT doma 43.5 48 0.0017 27.9 6.4 66 237-312 89-157 (181)
42 2qmw_A PDT, prephenate dehydra 42.7 64 0.0022 29.3 7.4 49 246-294 188-239 (267)
43 2qmx_A Prephenate dehydratase; 41.0 78 0.0027 28.9 7.7 50 246-295 202-251 (283)
44 2dtj_A Aspartokinase; protein- 39.7 61 0.0021 27.0 6.4 66 237-312 88-156 (178)
45 2re1_A Aspartokinase, alpha an 39.6 64 0.0022 26.5 6.4 37 239-275 20-57 (167)
46 3luy_A Probable chorismate mut 39.5 1.8E+02 0.0063 27.1 10.2 44 253-296 217-260 (329)
47 2lqj_A Mg2+ transport protein; 38.6 60 0.0021 24.7 5.6 62 245-308 9-74 (94)
48 1xkm_B Distinctin chain B; por 35.6 37 0.0013 19.6 2.9 18 179-196 4-21 (26)
49 1pd7_B MAD1; PAH2, SIN3, eukar 34.8 49 0.0017 19.6 3.4 19 175-193 2-20 (26)
50 2er8_A Regulatory protein Leu3 34.1 29 0.00099 24.4 2.9 20 186-205 49-68 (72)
51 4go7_X Aspartokinase; transfer 33.8 71 0.0024 27.6 5.9 60 234-293 24-87 (200)
52 3he4_B Synzip5; heterodimeric 31.6 64 0.0022 20.9 3.9 23 181-203 5-27 (46)
53 1zme_C Proline utilization tra 31.3 36 0.0012 23.6 3.0 19 186-204 44-62 (70)
54 3mwb_A Prephenate dehydratase; 30.8 1.2E+02 0.0042 28.1 7.3 50 245-294 202-252 (313)
55 3fx7_A Putative uncharacterize 30.8 90 0.0031 24.1 5.3 22 181-202 65-86 (94)
56 2jee_A YIIU; FTSZ, septum, coi 28.7 61 0.0021 24.4 3.9 24 181-204 15-38 (81)
57 3re3_A 2-C-methyl-D-erythritol 28.5 1.2E+02 0.004 25.8 6.1 45 257-312 82-126 (162)
58 2akf_A Coronin-1A; coiled coil 27.9 52 0.0018 20.1 2.7 16 187-202 14-29 (32)
59 2dt9_A Aspartokinase; protein- 27.8 1.7E+02 0.0058 23.8 7.1 38 238-275 10-48 (167)
60 2dtj_A Aspartokinase; protein- 27.7 1.9E+02 0.0064 23.9 7.5 35 239-273 10-45 (178)
61 3ab4_A Aspartokinase; aspartat 27.4 1.3E+02 0.0043 28.7 7.0 66 237-312 337-405 (421)
62 2rrl_A FLIK, flagellar HOOK-le 27.3 1.4E+02 0.0047 25.4 6.4 46 234-279 101-152 (169)
63 1dh3_A Transcription factor CR 26.3 52 0.0018 22.6 3.0 20 186-205 22-41 (55)
64 2ke4_A CDC42-interacting prote 25.5 1.3E+02 0.0045 23.2 5.5 60 143-203 6-86 (98)
65 1pyi_A Protein (pyrimidine pat 25.5 1.2E+02 0.004 22.2 5.2 22 185-206 47-68 (96)
66 3f0d_A 2-C-methyl-D-erythritol 25.4 1.2E+02 0.0041 26.2 5.7 45 257-312 99-143 (183)
67 1iv3_A 2-C-methyl-D-erythritol 24.8 1.2E+02 0.0042 25.3 5.6 45 257-312 76-120 (152)
68 3ble_A Citramalate synthase fr 24.0 75 0.0025 29.5 4.6 54 244-310 213-267 (337)
69 1phz_A Protein (phenylalanine 23.0 66 0.0023 31.4 4.1 51 244-294 34-84 (429)
70 1gd2_E Transcription factor PA 22.9 52 0.0018 24.0 2.6 18 185-202 28-45 (70)
71 2uzh_A 2C-methyl-D-erythritol 22.0 1.3E+02 0.0045 25.5 5.2 45 257-312 81-125 (165)
72 3c1m_A Probable aspartokinase; 22.0 1.4E+02 0.0048 28.9 6.3 68 237-312 397-467 (473)
73 1ybx_A Conserved hypothetical 21.9 1.6E+02 0.0055 24.3 5.7 51 181-251 43-93 (143)
74 1gx1_A 2-C-methyl-D-erythritol 21.8 1.4E+02 0.0047 25.2 5.3 45 257-312 77-121 (160)
75 1hwt_C Protein (heme activator 21.2 35 0.0012 24.4 1.4 20 185-204 57-76 (81)
76 2l5g_A GPS2 protein, G protein 21.0 1.3E+02 0.0044 19.3 3.8 30 175-204 4-33 (38)
77 1rwu_A Hypothetical UPF0250 pr 20.7 2.1E+02 0.0073 22.3 6.0 52 242-295 34-88 (109)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.63 E-value=2.4e-16 Score=122.29 Aligned_cols=63 Identities=27% Similarity=0.452 Sum_probs=59.3
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhcccCCC-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021208 143 NTQDHIIAERKRREKLSQRFIALSAIVPGL-KKMDKASVLGDAIKYLKQLQEKVKILEEQANKK 205 (316)
Q Consensus 143 ~~~~h~~~Er~RR~~in~~~~~LrslvP~~-~k~dKasiL~~Ai~YIk~Lq~~v~~L~~~~~~~ 205 (316)
++..|+.+||+||++||+.|.+|+++||+. .|+||++||.+||+||++||.+++.|+++.+..
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L 69 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSL 69 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999997 899999999999999999999999999977654
No 2
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.53 E-value=7.8e-15 Score=113.11 Aligned_cols=64 Identities=27% Similarity=0.479 Sum_probs=59.4
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHhcccCCC--CCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021208 142 SNTQDHIIAERKRREKLSQRFIALSAIVPGL--KKMDKASVLGDAIKYLKQLQEKVKILEEQANKK 205 (316)
Q Consensus 142 ~~~~~h~~~Er~RR~~in~~~~~LrslvP~~--~k~dKasiL~~Ai~YIk~Lq~~v~~L~~~~~~~ 205 (316)
.++..|+.+||+||..||+.|..|+++||.. .|++|++||..||+||+.|+.++++|+.+.+..
T Consensus 11 ~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 11 DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999976 699999999999999999999999999987653
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.52 E-value=9.8e-15 Score=113.19 Aligned_cols=62 Identities=27% Similarity=0.487 Sum_probs=57.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcccCCC--CCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021208 144 TQDHIIAERKRREKLSQRFIALSAIVPGL--KKMDKASVLGDAIKYLKQLQEKVKILEEQANKK 205 (316)
Q Consensus 144 ~~~h~~~Er~RR~~in~~~~~LrslvP~~--~k~dKasiL~~Ai~YIk~Lq~~v~~L~~~~~~~ 205 (316)
+..|+..||+||..||+.|..|+++||.+ .|++|++||..||+||+.|+.++++|+.+.+..
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L 66 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999974 899999999999999999999999999876654
No 4
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.52 E-value=3.5e-15 Score=110.63 Aligned_cols=54 Identities=28% Similarity=0.517 Sum_probs=50.0
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHhcccCCCC------CCCcchHHHHHHHHHHHHHHHH
Q 021208 142 SNTQDHIIAERKRREKLSQRFIALSAIVPGLK------KMDKASVLGDAIKYLKQLQEKV 195 (316)
Q Consensus 142 ~~~~~h~~~Er~RR~~in~~~~~LrslvP~~~------k~dKasiL~~Ai~YIk~Lq~~v 195 (316)
.++..|+.+||+||++||+.|..|++|||.+. |++|++||.+||+||++||++.
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999874 7899999999999999999865
No 5
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.51 E-value=1.1e-14 Score=109.79 Aligned_cols=58 Identities=31% Similarity=0.533 Sum_probs=53.3
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHhcccCCC-CCCCcchHHHHHHHHHHHHHHHHHHHH
Q 021208 142 SNTQDHIIAERKRREKLSQRFIALSAIVPGL-KKMDKASVLGDAIKYLKQLQEKVKILE 199 (316)
Q Consensus 142 ~~~~~h~~~Er~RR~~in~~~~~LrslvP~~-~k~dKasiL~~Ai~YIk~Lq~~v~~L~ 199 (316)
.++.+|+.+||+||++||+.|..|++|||+. .|+||++||..||+||++||.++.=|+
T Consensus 7 ~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 7 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4678999999999999999999999999975 799999999999999999999887554
No 6
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.51 E-value=2.3e-15 Score=111.22 Aligned_cols=54 Identities=26% Similarity=0.460 Sum_probs=48.7
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhcccCCC-------CCCCcchHHHHHHHHHHHHHHHHH
Q 021208 143 NTQDHIIAERKRREKLSQRFIALSAIVPGL-------KKMDKASVLGDAIKYLKQLQEKVK 196 (316)
Q Consensus 143 ~~~~h~~~Er~RR~~in~~~~~LrslvP~~-------~k~dKasiL~~Ai~YIk~Lq~~v~ 196 (316)
++.+|+.+||+||++||..|..|++|||++ .+.+||+||+.||+||++||++++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 468899999999999999999999999964 466799999999999999998753
No 7
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.50 E-value=2.4e-14 Score=118.18 Aligned_cols=61 Identities=21% Similarity=0.505 Sum_probs=52.3
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHhcccCCCC----CCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 021208 142 SNTQDHIIAERKRREKLSQRFIALSAIVPGLK----KMDKASVLGDAIKYLKQLQEKVKILEEQA 202 (316)
Q Consensus 142 ~~~~~h~~~Er~RR~~in~~~~~LrslvP~~~----k~dKasiL~~Ai~YIk~Lq~~v~~L~~~~ 202 (316)
.++..|+.+||+||++||++|..|++|||++. |++|++||.+||+||++||.+++.|+++.
T Consensus 26 ~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~ 90 (118)
T 4ati_A 26 QKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 90 (118)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999873 67899999999999999999999998753
No 8
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.48 E-value=3.4e-14 Score=111.59 Aligned_cols=62 Identities=29% Similarity=0.475 Sum_probs=56.5
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhcccCCC---CCCCcchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021208 143 NTQDHIIAERKRREKLSQRFIALSAIVPGL---KKMDKASVLGDAIKYLKQLQEKVKILEEQANK 204 (316)
Q Consensus 143 ~~~~h~~~Er~RR~~in~~~~~LrslvP~~---~k~dKasiL~~Ai~YIk~Lq~~v~~L~~~~~~ 204 (316)
.+..|+..||+||++||+.|..|+++||.. .|++|++||.+||+||++|+.+.+.|..+.+.
T Consensus 6 ~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~ 70 (88)
T 1nkp_A 6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDL 70 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999975 69999999999999999999999988775543
No 9
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.45 E-value=1.6e-13 Score=105.93 Aligned_cols=62 Identities=23% Similarity=0.247 Sum_probs=56.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcccCCC---CCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021208 144 TQDHIIAERKRREKLSQRFIALSAIVPGL---KKMDKASVLGDAIKYLKQLQEKVKILEEQANKK 205 (316)
Q Consensus 144 ~~~h~~~Er~RR~~in~~~~~LrslvP~~---~k~dKasiL~~Ai~YIk~Lq~~v~~L~~~~~~~ 205 (316)
+..|+..||+||..||+.|..|+++||.. .|.+|++||..|++||++|+++.+.|..+.+..
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L 66 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQL 66 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999965 688899999999999999999999999876643
No 10
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.42 E-value=3.4e-14 Score=107.86 Aligned_cols=52 Identities=31% Similarity=0.505 Sum_probs=48.5
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHhcccCCC----CCCCcchHHHHHHHHHHHHHH
Q 021208 142 SNTQDHIIAERKRREKLSQRFIALSAIVPGL----KKMDKASVLGDAIKYLKQLQE 193 (316)
Q Consensus 142 ~~~~~h~~~Er~RR~~in~~~~~LrslvP~~----~k~dKasiL~~Ai~YIk~Lq~ 193 (316)
.++.+|+.+||+||++||+.|.+|++|||.+ .|+|||+||+.||+||+.|+.
T Consensus 8 ~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 8 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999975 799999999999999999974
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.36 E-value=2.3e-13 Score=104.08 Aligned_cols=58 Identities=24% Similarity=0.350 Sum_probs=48.2
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHhcccCC---CCCC-CcchHHHHHHHHHHHHHHHHHHHH
Q 021208 142 SNTQDHIIAERKRREKLSQRFIALSAIVPG---LKKM-DKASVLGDAIKYLKQLQEKVKILE 199 (316)
Q Consensus 142 ~~~~~h~~~Er~RR~~in~~~~~LrslvP~---~~k~-dKasiL~~Ai~YIk~Lq~~v~~L~ 199 (316)
.++..|+..||+||..||+.|..|+.+||. ..|. .|++||..||+||+.||+++++++
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357889999999999999999999999995 3444 688899999999999999998865
No 12
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.13 E-value=3.6e-11 Score=87.79 Aligned_cols=54 Identities=26% Similarity=0.318 Sum_probs=49.1
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhcccCCC---CCCCcchHHHHHHHHHHHHHHHHH
Q 021208 143 NTQDHIIAERKRREKLSQRFIALSAIVPGL---KKMDKASVLGDAIKYLKQLQEKVK 196 (316)
Q Consensus 143 ~~~~h~~~Er~RR~~in~~~~~LrslvP~~---~k~dKasiL~~Ai~YIk~Lq~~v~ 196 (316)
++..|+..||+|+..||+.|..||.+||.. .|.+|+.+|..||+||..|++.++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 367799999999999999999999999964 689999999999999999998753
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.13 E-value=2.7e-11 Score=90.63 Aligned_cols=54 Identities=24% Similarity=0.444 Sum_probs=49.7
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHhcccCCC--CCCCcchHHHHHHHHHHHHHHHH
Q 021208 142 SNTQDHIIAERKRREKLSQRFIALSAIVPGL--KKMDKASVLGDAIKYLKQLQEKV 195 (316)
Q Consensus 142 ~~~~~h~~~Er~RR~~in~~~~~LrslvP~~--~k~dKasiL~~Ai~YIk~Lq~~v 195 (316)
.++..|+..||+|+..||+.|..||.+||.. .|++|+.||..||+||..|++.+
T Consensus 11 ~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 11 DRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999964 78999999999999999999764
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.88 E-value=1e-09 Score=105.09 Aligned_cols=54 Identities=28% Similarity=0.526 Sum_probs=43.1
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHhcccC-CCCCCCcchHHHHHHHHHHHHHHHH
Q 021208 142 SNTQDHIIAERKRREKLSQRFIALSAIVP-GLKKMDKASVLGDAIKYLKQLQEKV 195 (316)
Q Consensus 142 ~~~~~h~~~Er~RR~~in~~~~~LrslvP-~~~k~dKasiL~~Ai~YIk~Lq~~v 195 (316)
.++..|+.+||+||++||..|..|++||| ...|+||++||..||.||+.|+...
T Consensus 11 ~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 11 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 46788999999999999999999999999 4589999999999999999998653
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.72 E-value=4.7e-09 Score=101.65 Aligned_cols=53 Identities=30% Similarity=0.474 Sum_probs=49.2
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHhcccC----CCCCCCcchHHHHHHHHHHHHHHH
Q 021208 142 SNTQDHIIAERKRREKLSQRFIALSAIVP----GLKKMDKASVLGDAIKYLKQLQEK 194 (316)
Q Consensus 142 ~~~~~h~~~Er~RR~~in~~~~~LrslvP----~~~k~dKasiL~~Ai~YIk~Lq~~ 194 (316)
.++.+|+.+||+||++||..|..|++||| ...|+||++||..||.||+.|+..
T Consensus 12 ~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 12 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 46889999999999999999999999999 568999999999999999999853
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.59 E-value=9.2e-09 Score=76.45 Aligned_cols=45 Identities=20% Similarity=0.417 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCC---CCCCcchHHHHHHHHHHHHHH
Q 021208 149 IAERKRREKLSQRFIALSAIVPGL---KKMDKASVLGDAIKYLKQLQE 193 (316)
Q Consensus 149 ~~Er~RR~~in~~~~~LrslvP~~---~k~dKasiL~~Ai~YIk~Lq~ 193 (316)
..||+|+..||+.|..||.+||.. +|++|..+|.-||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 347889999999999999999965 789999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.47 E-value=2.3e-07 Score=71.50 Aligned_cols=48 Identities=19% Similarity=0.452 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhcccCCC----CCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 021208 155 REKLSQRFIALSAIVPGL----KKMDKASVLGDAIKYLKQLQEKVKILEEQA 202 (316)
Q Consensus 155 R~~in~~~~~LrslvP~~----~k~dKasiL~~Ai~YIk~Lq~~v~~L~~~~ 202 (316)
|..||++|..|..|||.+ .|.+|++||..|++||++||+.++.+.++.
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e 55 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 55 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999964 578999999999999999999998887643
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.06 E-value=5.2e-06 Score=65.82 Aligned_cols=48 Identities=23% Similarity=0.373 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHhcccCCC---CCCCcchHHHHHHHHHHHHHHHHHH
Q 021208 150 AERKRREKLSQRFIALSAIVPGL---KKMDKASVLGDAIKYLKQLQEKVKI 197 (316)
Q Consensus 150 ~Er~RR~~in~~~~~LrslvP~~---~k~dKasiL~~Ai~YIk~Lq~~v~~ 197 (316)
.||.|-..||+.|..||.+||.. +|..|..+|.-||+||..|++-++.
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 35788889999999999999964 6899999999999999999987543
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.09 E-value=0.01 Score=44.74 Aligned_cols=68 Identities=15% Similarity=0.203 Sum_probs=54.3
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHh
Q 021208 244 SVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQL 314 (316)
Q Consensus 244 ~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~~ 314 (316)
.+.|.|.|++++|++.+|...|-+.|..|++.+....++. +.+.+...+.+ ...+++|.+.|+..-..
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~-~~~~i~v~~~~--~~~l~~l~~~L~~~~~~ 72 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEY-FTMMAVVSSDE--KQDFTYLRNEFEAFGQT 72 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTE-EEEEEEEEESS--CCCHHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCE-EEEEEEEEeCC--CCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999998877654 33555666654 34788999998875443
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.41 E-value=0.02 Score=49.40 Aligned_cols=66 Identities=15% Similarity=0.247 Sum_probs=51.1
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHHH
Q 021208 244 SVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQ 313 (316)
Q Consensus 244 ~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~ 313 (316)
.+.|.|.|++++|++.+|...|.++|+.|+.++....++.+. .++++..+. ...++|.+.|..++.
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~-~~~~v~~~~---~~~~~l~~~L~~~~~ 71 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFT-LLMLISGSP---SNITRVETTLPLLGQ 71 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEE-EEEEEEECH---HHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceE-EEEEEecCC---CCHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999988777655 355555432 245667777666543
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.08 E-value=0.034 Score=48.39 Aligned_cols=50 Identities=14% Similarity=0.333 Sum_probs=41.9
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEec
Q 021208 244 SVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMD 294 (316)
Q Consensus 244 ~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~ 294 (316)
.+.|.|.|+.++|++..|...|.++|+.|+.+...+..+.++ .++.+..+
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~-m~~~v~~~ 54 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFA-MIVLVSLN 54 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEE-EEEEEEES
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEE-EEEEEEec
Confidence 478999999999999999999999999999999988776654 24555544
No 22
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=95.87 E-value=0.033 Score=41.21 Aligned_cols=63 Identities=14% Similarity=0.227 Sum_probs=46.4
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHH
Q 021208 244 SVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLH 309 (316)
Q Consensus 244 ~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~ 309 (316)
.+.|+|.+.+++|+|.+|...|.+.|+.|.+..+...++ ...+.+...+.+. -.++++.+.|+
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~-~~~~~i~v~~~~~--~~l~~l~~~L~ 67 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDG-IFTCNLMIFVKNT--DKLTTLMDKLR 67 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSS-EEEEEEEEEESSH--HHHHHHHHHHT
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCC-EEEEEEEEEECCH--HHHHHHHHHHh
Confidence 457889999999999999999999999999999887776 4445555555432 23444554443
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=95.38 E-value=0.1 Score=45.26 Aligned_cols=69 Identities=13% Similarity=0.190 Sum_probs=51.7
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeC-----CeEEEEEEEEEecCCcccCHHHHHHHHHHHHHhh
Q 021208 244 SVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFG-----SSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQLF 315 (316)
Q Consensus 244 ~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g-----~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~~~ 315 (316)
.+.|.|.|+.++|++..|-..|-++|+.|..+...+.+ ...+.+.+.....+ ... ++|.+.|......|
T Consensus 93 ~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~--~~~-~~l~~~l~~~a~~l 166 (195)
T 2nyi_A 93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPF--PLY-QEVVTALSRVEEEF 166 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEG--GGH-HHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCC--Ccc-HHHHHHHHHHHHHc
Confidence 47899999999999999999999999999999998775 22333444444442 334 77777777665543
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=95.29 E-value=0.19 Score=43.09 Aligned_cols=71 Identities=15% Similarity=0.247 Sum_probs=53.8
Q ss_pred CeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeC-------CeEEEEEEEEEecCCcccCHHHHHHHHHHHHHhh
Q 021208 243 KSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFG-------SSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQLF 315 (316)
Q Consensus 243 ~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g-------~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~~~ 315 (316)
....|.|.|+.++|++.+|.+.|.++|+.|..+...+.+ ...+.+.+.....+ ....++|.+.|......|
T Consensus 92 ~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~--~~~~~~l~~~l~~~~~~~ 169 (192)
T 1u8s_A 92 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDS--GCNLMQLQEEFDALCTAL 169 (192)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECT--TSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCC--CCCHHHHHHHHHHHHHHh
Confidence 346889999999999999999999999999999988765 22443444444433 457888888888766554
No 25
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=92.77 E-value=0.41 Score=45.67 Aligned_cols=69 Identities=14% Similarity=0.217 Sum_probs=52.9
Q ss_pred CeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHHH
Q 021208 243 KSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQ 313 (316)
Q Consensus 243 ~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~ 313 (316)
..++|.|.|+.++|++..|...|-++|..|+.++-...++.++ ..+.+.+++. ..+.++|.+.|...-.
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~-~~~~~~~~~~-~~~~~~l~~~l~~~~~ 79 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLT-LGVLVCCPAD-VADGPALRHDVEAAIR 79 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEE-EEEEEEECHH-HHTSHHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeE-EEEEEEecCC-cCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999888887655 3445555332 2355777777765443
No 26
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=92.36 E-value=0.83 Score=42.35 Aligned_cols=69 Identities=6% Similarity=0.098 Sum_probs=51.2
Q ss_pred CeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEE--eCCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHh
Q 021208 243 KSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMT--FGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQL 314 (316)
Q Consensus 243 ~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~--~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~~ 314 (316)
..+.|.|.|++++|++..|...|-++|+.|+.++-.. ..+.++ ..+.+..++ ..+.++|.+.|...-..
T Consensus 7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ff-mr~~~~~~~--~~~~~~L~~~f~~la~~ 77 (286)
T 3n0v_A 7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFF-IRVEFRQPD--DFDEAGFRAGLAERSEA 77 (286)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEE-EEEEEECCS--SCCHHHHHHHHHHHHGG
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeE-EEEEEecCC--CCCHHHHHHHHHHHHHH
Confidence 3478999999999999999999999999999988763 344333 234444433 46788888888654433
No 27
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=91.90 E-value=1.4 Score=41.20 Aligned_cols=70 Identities=9% Similarity=0.145 Sum_probs=50.9
Q ss_pred CeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEe--CCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHh
Q 021208 243 KSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTF--GSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQL 314 (316)
Q Consensus 243 ~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~--g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~~ 314 (316)
..+.|.|.|++++|++..|...|-++|+.|+.++-... ++.++ ..+.+..++ ...+.++|.+.|...-..
T Consensus 21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~Ff-Mr~~~~~~~-~~~~~~~L~~~l~~la~~ 92 (302)
T 3o1l_A 21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFF-MRHEIRADT-LPFDLDGFREAFTPIAEE 92 (302)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEE-EEEEEEGGG-SSSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEE-EEEEEecCC-CCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999987754 34333 223333322 246788888888654443
No 28
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=91.54 E-value=1.7 Score=40.25 Aligned_cols=70 Identities=6% Similarity=0.177 Sum_probs=51.4
Q ss_pred CeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEE--eCCeEEEEEEEEEecCCcccCHHHHHHHHHHHHHh
Q 021208 243 KSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMT--FGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAFQL 314 (316)
Q Consensus 243 ~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~--~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al~~ 314 (316)
..+.|.|.|++++|++..|...|-++|+.|+.++... ..+.++ ..+.+.+++. ..+.++|.+.|...-..
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ff-mr~~~~~~~~-~~~~~~L~~~f~~la~~ 76 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFF-MRVVFNAAAK-VIPLASLRTGFGVIAAK 76 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEE-EEEEEEESSC-CCCHHHHHHHHHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceE-EEEEEEcCCC-CCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999988752 334333 2344455432 46788888888655443
No 29
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=90.14 E-value=1.9 Score=39.95 Aligned_cols=71 Identities=11% Similarity=0.220 Sum_probs=49.7
Q ss_pred CeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEE--eCCeEEEEEEEEEecC-CcccCHHHHHHHHHHHHHh
Q 021208 243 KSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMT--FGSSVLDVTIIAQMDV-EFNMTVKDLVKNLHSAFQL 314 (316)
Q Consensus 243 ~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~--~g~~~l~~ti~aq~~~-~~~ls~~eL~~~L~~al~~ 314 (316)
..+.|.|.|++++|++.+|...|-++|+.|+.++-.. ..+.++ ..+....+. +...+.++|.+.|...-..
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ff-mr~~~~~~~~~~~~~~~~L~~~f~~la~~ 82 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFF-VRCVFHATDDADALRVDALRREFEPIAER 82 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEE-EEEEEEECC----CCHHHHHHHHHHHHHH
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceE-EEEEEEccCcccCCCHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999988773 344333 223333330 1236788888887654433
No 30
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=90.00 E-value=0.71 Score=37.89 Aligned_cols=36 Identities=17% Similarity=0.333 Sum_probs=32.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeC
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFG 281 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g 281 (316)
-|+|.|.+|.|++.+|+.+|-+.++.+...++.+-|
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g 37 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG 37 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTT
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCC
Confidence 478999999999999999999999999999987653
No 31
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=88.58 E-value=2.3 Score=36.25 Aligned_cols=62 Identities=15% Similarity=0.254 Sum_probs=45.6
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCC-eEEEEEEEEEecCCcccCHHHHHHHHH
Q 021208 245 VLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGS-SVLDVTIIAQMDVEFNMTVKDLVKNLH 309 (316)
Q Consensus 245 v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~-~~l~~ti~aq~~~~~~ls~~eL~~~L~ 309 (316)
..|.|..++++|+|.+|...|...|+.+.+.++.+..+ ....++|.+. ++ .-.++.|.+.|+
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~d--~~~leqI~kqL~ 66 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-GD--EKVLEQIEKQLH 66 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-SC--HHHHHHHHHHHH
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-cc--HHHHHHHHHHHc
Confidence 46788999999999999999999999999988876653 4555666665 33 223444555544
No 32
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=88.51 E-value=1.4 Score=39.58 Aligned_cols=62 Identities=10% Similarity=0.143 Sum_probs=45.1
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeC----CeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 021208 244 SVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFG----SSVLDVTIIAQMDVEFNMTVKDLVKNLHS 310 (316)
Q Consensus 244 ~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g----~~~l~~ti~aq~~~~~~ls~~eL~~~L~~ 310 (316)
.+.|.|.+.+++|+|.+|+..|-+.+..|.+.+...-. +..-. +..++++. .+++|.++|++
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~--I~IEV~d~---~Le~LL~kLrk 69 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKAL--IYFEIEGG---DFEKILERVKT 69 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEE--EEEEECSS---CHHHHHHHHHT
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEE--EEEEECCC---CHHHHHHHHhC
Confidence 46788999999999999999999999999999987754 33332 33566544 88888888864
No 33
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=87.06 E-value=3.1 Score=38.47 Aligned_cols=65 Identities=9% Similarity=0.252 Sum_probs=44.4
Q ss_pred CeEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEE--eCCeEEEEEEEEEecCCcccCHHHHHHHHHHH
Q 021208 243 KSVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMT--FGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSA 311 (316)
Q Consensus 243 ~~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~--~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~a 311 (316)
..+.|.|.|++++|++..|...|-++|+.|+.++... .++.++ ..+....+. ....+|.+.|...
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ff-mr~~~~~~~---~~~~~L~~~f~~l 72 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFF-MRVSVEIPV---AGVNDFNSAFGKV 72 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEE-EEEEEECCC------CHHHHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEE-EEEEEEcCC---CCHHHHHHHHHHH
Confidence 4578999999999999999999999999999998752 344333 223333322 2344666666543
No 34
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=85.61 E-value=3.2 Score=35.40 Aligned_cols=62 Identities=15% Similarity=0.256 Sum_probs=45.2
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCC-eEEEEEEEEEecCCcccCHHHHHHHHH
Q 021208 245 VLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGS-SVLDVTIIAQMDVEFNMTVKDLVKNLH 309 (316)
Q Consensus 245 v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~-~~l~~ti~aq~~~~~~ls~~eL~~~L~ 309 (316)
-.|.|..++++|+|.+|...|...|+.|.+.++.+..+ ....++|++. ++ .-.++.|.+.|+
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~-~d--~~~leql~kQL~ 67 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN-GP--DEIVEQITKQLN 67 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE-EC--HHHHHHHHHHHH
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe-cc--HHHHHHHHHHhc
Confidence 46788999999999999999999999999998876553 4555666665 22 223444444444
No 35
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=83.96 E-value=6.2 Score=34.56 Aligned_cols=62 Identities=15% Similarity=0.250 Sum_probs=46.4
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCC-eEEEEEEEEEecCCcccCHHHHHHHHH
Q 021208 245 VLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGS-SVLDVTIIAQMDVEFNMTVKDLVKNLH 309 (316)
Q Consensus 245 v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~-~~l~~ti~aq~~~~~~ls~~eL~~~L~ 309 (316)
-.|.|..++++|.|.+|...|...|+.|.+-.+.+..+ .+..+||++.-+ .-.++.|.+.|.
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~---e~~ieqL~kQL~ 92 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD---DKTIEQIEKQAY 92 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC---TTHHHHHHHHHT
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC---HHHHHHHHHHhc
Confidence 46778889999999999999999999999988876544 455667776533 234555555543
No 36
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=62.06 E-value=35 Score=27.10 Aligned_cols=57 Identities=9% Similarity=0.191 Sum_probs=37.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHS 310 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~ 310 (316)
+|-+..+.++|.+.+++++|.+.|+.|...-+..-+.... + +...+ ..+..++.|+.
T Consensus 74 vv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~-~--~i~~~-----d~~~A~~~L~~ 130 (144)
T 2f06_A 74 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVAN-V--VIRPS-----NMDKCIEVLKE 130 (144)
T ss_dssp EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEE-E--EEEES-----CHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEE-E--EEEeC-----CHHHHHHHHHH
Confidence 3556678999999999999999999996644332233332 2 22332 55666666654
No 37
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=51.23 E-value=35 Score=24.04 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021208 151 ERKRREKLSQRFIALSAIVPGLKKMDKASVLGDAIKYLKQLQEKVKILEEQANK 204 (316)
Q Consensus 151 Er~RR~~in~~~~~LrslvP~~~k~dKasiL~~Ai~YIk~Lq~~v~~L~~~~~~ 204 (316)
||++|.+...+.++.++= ..-..|+..|+.++..|+.+...
T Consensus 1 Ekr~rrrerNR~AA~rcR-------------~rKk~~~~~Le~~v~~L~~~n~~ 41 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCR-------------NRRRELTDTLQAETDQLEDEKSA 41 (63)
T ss_dssp CHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666777777777762 24567777777777777765543
No 38
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=48.55 E-value=43 Score=27.55 Aligned_cols=65 Identities=18% Similarity=0.136 Sum_probs=42.5
Q ss_pred EEEeCCeEEEEEEecC---CCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 238 ARFCDKSVLIRVHCEK---RKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 238 v~v~~~~v~I~I~c~k---~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
+.+.++-..|.|.... ++|.+.+++++|.+.|+.|...+ +-...+ +++.. .. ..+..++.|+.+|
T Consensus 97 i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is--tse~~i---s~vv~--~~---d~~~av~~Lh~~f 164 (167)
T 2re1_A 97 IDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS--TSEIKV---SVLID--EK---YMELATRVLHKAF 164 (167)
T ss_dssp EEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE--ECSSEE---EEEEE--GG---GHHHHHHHHHHHT
T ss_pred EEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE--cccCEE---EEEEe--HH---HHHHHHHHHHHHh
Confidence 4455666788888765 78999999999999999997744 323322 22222 21 3446666666654
No 39
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=47.92 E-value=38 Score=27.85 Aligned_cols=66 Identities=15% Similarity=0.158 Sum_probs=43.0
Q ss_pred EEEEeCCeEEEEEEecC---CCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 237 EARFCDKSVLIRVHCEK---RKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 237 ev~v~~~~v~I~I~c~k---~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
.+.+.++-..|.|.... .+|.+.+++++|.+.|+.|.-.+ +-.- .++++.. .. ..+..++.|+.++
T Consensus 88 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~Se~---~is~vv~--~~---d~~~Av~~Lh~~f 156 (167)
T 2dt9_A 88 EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA--TSEV---RISVIIP--AE---YAEAALRAVHQAF 156 (167)
T ss_dssp EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE--ECSS---EEEEEEE--GG---GHHHHHHHHHHHT
T ss_pred cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE--ccCC---EEEEEEe--HH---HHHHHHHHHHHHH
Confidence 34556677788887765 78999999999999999985443 1122 2233322 22 3566677777654
No 40
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=47.25 E-value=64 Score=25.49 Aligned_cols=37 Identities=8% Similarity=0.220 Sum_probs=30.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCC
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGS 282 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~ 282 (316)
.|.|..++++|.+.+|...|.+.|+.|..-.+....+
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~ 44 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENAD 44 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSS
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCC
Confidence 4667888999999999999999999987766554433
No 41
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=43.51 E-value=48 Score=27.94 Aligned_cols=66 Identities=14% Similarity=0.169 Sum_probs=44.1
Q ss_pred EEEEeCCeEEEEEEec---CCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 237 EARFCDKSVLIRVHCE---KRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 237 ev~v~~~~v~I~I~c~---k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
++.+.++-..|.|... ..+|++.+++++|.+.|+.|.-.+.+ .-++. ++. +.. ..+..++.|+.+|
T Consensus 89 ~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~IstS--ei~Is---~vV--~~~---d~~~Av~aLH~~f 157 (181)
T 3s1t_A 89 QLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTS--EIRIS---VLC--RDT---ELDKAVVALHEAF 157 (181)
T ss_dssp EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEE--TTEEE---EEE--EGG---GHHHHHHHHHHHH
T ss_pred eEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEcC--CCEEE---EEE--eHH---HHHHHHHHHHHHH
Confidence 4556667777877654 56899999999999999888665522 33222 222 222 4567777887776
No 42
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=42.73 E-value=64 Score=29.27 Aligned_cols=49 Identities=6% Similarity=0.112 Sum_probs=36.6
Q ss_pred EEEEEe---cCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEec
Q 021208 246 LIRVHC---EKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMD 294 (316)
Q Consensus 246 ~I~I~c---~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~ 294 (316)
.|-+.. ++++|.|.++|..+...|+.+..-..-+..+....|.|-+.++
T Consensus 188 sl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e 239 (267)
T 2qmw_A 188 SLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD 239 (267)
T ss_dssp EEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES
T ss_pred EEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe
Confidence 343555 6889999999999999999998888877765544444455555
No 43
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=41.01 E-value=78 Score=28.94 Aligned_cols=50 Identities=8% Similarity=0.018 Sum_probs=37.7
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecC
Q 021208 246 LIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDV 295 (316)
Q Consensus 246 ~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~ 295 (316)
.|-+..++++|.|.++|..+...|+.+..-..-+..+....|.|-+.++.
T Consensus 202 sl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg 251 (283)
T 2qmx_A 202 SIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIG 251 (283)
T ss_dssp EEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEES
T ss_pred EEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEec
Confidence 33344468899999999999999999998888887665545555556543
No 44
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=39.70 E-value=61 Score=27.02 Aligned_cols=66 Identities=12% Similarity=0.211 Sum_probs=43.3
Q ss_pred EEEEeCCeEEEEEEec---CCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 237 EARFCDKSVLIRVHCE---KRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 237 ev~v~~~~v~I~I~c~---k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
.+.+.++-..|.|... ..+|++.+++++|.+.|+.|.-.+ +-.-++ .+.. +. -..+..++.|+.+|
T Consensus 88 ~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe~~I---s~vV--~~---~d~~~Av~~Lh~~F 156 (178)
T 2dtj_A 88 NVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRI---SVLI--RE---DDLDAAARALHEQF 156 (178)
T ss_dssp EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEE---EEEE--EG---GGHHHHHHHHHHHH
T ss_pred eEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCeE---EEEE--eH---HHHHHHHHHHHHHH
Confidence 3556677778888765 457999999999999999986643 223222 2222 22 24566677777765
No 45
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=39.59 E-value=64 Score=26.51 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=29.8
Q ss_pred EEeCCeEEEEEE-ecCCCCHHHHHHHHHHhCCCeEEEE
Q 021208 239 RFCDKSVLIRVH-CEKRKGVFEKIVAEIEKLHLTVINS 275 (316)
Q Consensus 239 ~v~~~~v~I~I~-c~k~~gll~~Il~~Le~lgL~Vv~a 275 (316)
-...+...|.|. -+.++|.+.+|++.|.+.|+.|...
T Consensus 20 a~~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i 57 (167)
T 2re1_A 20 AFDKNQARINVRGVPDKPGVAYQILGAVADANIEVDMI 57 (167)
T ss_dssp EEECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCE
T ss_pred EecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEE
Confidence 445666788888 4888999999999999999887443
No 46
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=39.52 E-value=1.8e+02 Score=27.05 Aligned_cols=44 Identities=11% Similarity=0.161 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCC
Q 021208 253 KRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVE 296 (316)
Q Consensus 253 k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~ 296 (316)
+++|.|.++|..+...|+....-..-+..+....|.|-+.+++.
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~ 260 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAA 260 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSC
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCC
Confidence 57999999999999999999998888888887777777777543
No 47
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=38.59 E-value=60 Score=24.70 Aligned_cols=62 Identities=19% Similarity=0.258 Sum_probs=42.1
Q ss_pred EEEEEEecCC--CCHHHHHHHHHHhCCCeEEEEEEEEeCCe-E-EEEEEEEEecCCcccCHHHHHHHH
Q 021208 245 VLIRVHCEKR--KGVFEKIVAEIEKLHLTVINSSVMTFGSS-V-LDVTIIAQMDVEFNMTVKDLVKNL 308 (316)
Q Consensus 245 v~I~I~c~k~--~gll~~Il~~Le~lgL~Vv~asvs~~g~~-~-l~~ti~aq~~~~~~ls~~eL~~~L 308 (316)
..|+|.|... ..+..-+++.|+..++.+.+-....+++. + +..++.+.-.+. -.++.|+..|
T Consensus 9 Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~~~~veI~A~L~at~~~~--~~Le~iv~rL 74 (94)
T 2lqj_A 9 YQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAGDDNITLTAHLLMVGHTP--AKLERLVAEL 74 (94)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECSSSCEEEEEEEEEESCCH--HHHHHHHHHH
T ss_pred EEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCCCCeEEEEEEEEecCCCH--HHHHHHHHHH
Confidence 5788999876 35688889999999999998887776544 4 555555554332 2444555544
No 48
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=35.56 E-value=37 Score=19.60 Aligned_cols=18 Identities=56% Similarity=0.626 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 021208 179 SVLGDAIKYLKQLQEKVK 196 (316)
Q Consensus 179 siL~~Ai~YIk~Lq~~v~ 196 (316)
+-|-+|-+|+.+|+++++
T Consensus 4 sgliearkyleqlhrklk 21 (26)
T 1xkm_B 4 SGLIEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 557789999999988765
No 49
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=34.83 E-value=49 Score=19.59 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=15.1
Q ss_pred CCcchHHHHHHHHHHHHHH
Q 021208 175 MDKASVLGDAIKYLKQLQE 193 (316)
Q Consensus 175 ~dKasiL~~Ai~YIk~Lq~ 193 (316)
+....+|-+|.+|+...++
T Consensus 2 ~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4567789999999987665
No 50
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=34.11 E-value=29 Score=24.36 Aligned_cols=20 Identities=10% Similarity=0.120 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 021208 186 KYLKQLQEKVKILEEQANKK 205 (316)
Q Consensus 186 ~YIk~Lq~~v~~L~~~~~~~ 205 (316)
.||..|+.+|+.|+..++..
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999877643
No 51
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=33.77 E-value=71 Score=27.65 Aligned_cols=60 Identities=10% Similarity=0.161 Sum_probs=38.3
Q ss_pred CeeE-EEEeCCeEEEEEE-ecCCCCHHHHHHHHHHhCCCeE--EEEEEEEeCCeEEEEEEEEEe
Q 021208 234 PEIE-ARFCDKSVLIRVH-CEKRKGVFEKIVAEIEKLHLTV--INSSVMTFGSSVLDVTIIAQM 293 (316)
Q Consensus 234 p~Ve-v~v~~~~v~I~I~-c~k~~gll~~Il~~Le~lgL~V--v~asvs~~g~~~l~~ti~aq~ 293 (316)
|.|. +-...+.+.|.|. .+.++|.+.+|+.+|.+.|+.| +.-+++...+...++++.+..
T Consensus 24 ~vVtGIa~~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~ 87 (200)
T 4go7_X 24 PILTGVAHDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSR 87 (200)
T ss_dssp CEEEEEEEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEG
T ss_pred CcEEEEEccCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecch
Confidence 4443 3445667778774 5788999999999999999766 433444444444455555443
No 52
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=31.58 E-value=64 Score=20.93 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 021208 181 LGDAIKYLKQLQEKVKILEEQAN 203 (316)
Q Consensus 181 L~~Ai~YIk~Lq~~v~~L~~~~~ 203 (316)
+.+--+||++|+++..+|+.-++
T Consensus 5 vkelknyiqeleernaelknlke 27 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKE 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHH
Confidence 45667899999999998887544
No 53
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=31.31 E-value=36 Score=23.61 Aligned_cols=19 Identities=42% Similarity=0.627 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 021208 186 KYLKQLQEKVKILEEQANK 204 (316)
Q Consensus 186 ~YIk~Lq~~v~~L~~~~~~ 204 (316)
.||..|+.+++.|+.++..
T Consensus 44 ~~~~~L~~ri~~Le~~l~~ 62 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNR 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5788888888888877654
No 54
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=30.81 E-value=1.2e+02 Score=28.09 Aligned_cols=50 Identities=10% Similarity=0.083 Sum_probs=35.6
Q ss_pred EEEEEEec-CCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEec
Q 021208 245 VLIRVHCE-KRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMD 294 (316)
Q Consensus 245 v~I~I~c~-k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~ 294 (316)
.-|-+..+ +++|.|.++|..|...|+.+..-..-+..+....|.|-+.++
T Consensus 202 TSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e 252 (313)
T 3mwb_A 202 TTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDAD 252 (313)
T ss_dssp EEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEE
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEe
Confidence 34445564 789999999999999999998888777655443334444443
No 55
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=30.80 E-value=90 Score=24.10 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021208 181 LGDAIKYLKQLQEKVKILEEQA 202 (316)
Q Consensus 181 L~~Ai~YIk~Lq~~v~~L~~~~ 202 (316)
.+.|=+||..|.++++.|++..
T Consensus 65 ~e~a~e~vp~L~~~i~vle~~~ 86 (94)
T 3fx7_A 65 DEAAQEQIAWLKERIRVLEEDY 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHhHHHHHHHHHhHHHH
Confidence 5578899999999999999853
No 56
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=28.68 E-value=61 Score=24.38 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 021208 181 LGDAIKYLKQLQEKVKILEEQANK 204 (316)
Q Consensus 181 L~~Ai~YIk~Lq~~v~~L~~~~~~ 204 (316)
+..||+-|.-||.++++|++++..
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~ 38 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNS 38 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999987654
No 57
>3re3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; structural genomics, center for structural genomics of infec diseases, csgid; 2.65A {Francisella tularensis subsp} SCOP: d.79.5.0
Probab=28.46 E-value=1.2e+02 Score=25.75 Aligned_cols=45 Identities=22% Similarity=0.335 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 257 VFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 257 ll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
+|.++++.+++.|..|.| +++||++|.+.-.. -.+++.++|-.+|
T Consensus 82 lL~~~~~~v~~~G~~i~N----------vD~tii~q~PKl~p-~~~~m~~~la~~L 126 (162)
T 3re3_A 82 FLAEIKKMLDKKQYSISN----------IDCTIIAQAPKMLP-HIEKMRACLANIL 126 (162)
T ss_dssp HHHHHHHHHHHTTCEEEE----------EEEEEECSSSCCGG-GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEE----------EEEEEEcCCCcchh-HHHHHHHHHHHHH
Confidence 799999999999999999 56788888765433 4667777777665
No 58
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=27.87 E-value=52 Score=20.07 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 021208 187 YLKQLQEKVKILEEQA 202 (316)
Q Consensus 187 YIk~Lq~~v~~L~~~~ 202 (316)
-+++||+++..|++-.
T Consensus 14 ivq~lq~r~drle~tv 29 (32)
T 2akf_A 14 IVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3567777777777644
No 59
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=27.78 E-value=1.7e+02 Score=23.78 Aligned_cols=38 Identities=11% Similarity=0.069 Sum_probs=29.1
Q ss_pred EEEeCCeEEEEEEe-cCCCCHHHHHHHHHHhCCCeEEEE
Q 021208 238 ARFCDKSVLIRVHC-EKRKGVFEKIVAEIEKLHLTVINS 275 (316)
Q Consensus 238 v~v~~~~v~I~I~c-~k~~gll~~Il~~Le~lgL~Vv~a 275 (316)
+....+-..|.|.. +.++|.+.+|+.+|.+.|+.|.-.
T Consensus 10 Ia~~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I 48 (167)
T 2dt9_A 10 VALDLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMI 48 (167)
T ss_dssp EEEECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCE
T ss_pred EEEeCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEE
Confidence 34456667777765 667899999999999999877443
No 60
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=27.73 E-value=1.9e+02 Score=23.90 Aligned_cols=35 Identities=9% Similarity=0.118 Sum_probs=27.6
Q ss_pred EEeCCeEEEEEE-ecCCCCHHHHHHHHHHhCCCeEE
Q 021208 239 RFCDKSVLIRVH-CEKRKGVFEKIVAEIEKLHLTVI 273 (316)
Q Consensus 239 ~v~~~~v~I~I~-c~k~~gll~~Il~~Le~lgL~Vv 273 (316)
....+.+.|.|. .++++|.+.+|++.|.+.|+.|.
T Consensus 10 a~~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId 45 (178)
T 2dtj_A 10 ATDKSEAKVTVLGISDKPGEAAKVFRALADAEINID 45 (178)
T ss_dssp EEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCC
T ss_pred EecCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEE
Confidence 445666788884 57889999999999999995543
No 61
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=27.41 E-value=1.3e+02 Score=28.70 Aligned_cols=66 Identities=12% Similarity=0.256 Sum_probs=43.6
Q ss_pred EEEEeCCeEEEEEEec---CCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 237 EARFCDKSVLIRVHCE---KRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 237 ev~v~~~~v~I~I~c~---k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
.+.+.++-..|.|... ..+|++.+++++|.+.|+.|.-.+ +-..++ .++ ++.. ..+..++.|+.+|
T Consensus 337 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~Se~~i---s~v--V~~~---d~~~Av~~Lh~~f 405 (421)
T 3ab4_A 337 NVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRI---SVL--IRED---DLDAAARALHEQF 405 (421)
T ss_dssp EEEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEE--EETTEE---EEE--EEGG---GHHHHHHHHHHHT
T ss_pred eEEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCeE---EEE--EeHH---HHHHHHHHHHHHH
Confidence 3555667778888764 568999999999999998886443 223222 222 2232 3567777777765
No 62
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=27.30 E-value=1.4e+02 Score=25.39 Aligned_cols=46 Identities=9% Similarity=0.179 Sum_probs=37.6
Q ss_pred CeeEEEEeCCeEEEEEEecCCC------CHHHHHHHHHHhCCCeEEEEEEEE
Q 021208 234 PEIEARFCDKSVLIRVHCEKRK------GVFEKIVAEIEKLHLTVINSSVMT 279 (316)
Q Consensus 234 p~Vev~v~~~~v~I~I~c~k~~------gll~~Il~~Le~lgL~Vv~asvs~ 279 (316)
-+|.+++.++.+.|.+...... .-+.++-+.|.+.||.+..++|+.
T Consensus 101 l~V~l~~~~~q~~v~f~a~~~~vReaLe~~lp~LRe~La~qGi~L~~v~Vs~ 152 (169)
T 2rrl_A 101 VHISLKLDDNQAQLQMVSPHSHVRAALEAALPMLRTQLAESGIQLGQSSISS 152 (169)
T ss_dssp EEEEEEEETTEEEEEEECCSSHHHHHHHHTHHHHHHHHHTTTCEEEEEEEES
T ss_pred EEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEec
Confidence 3666777899999999988763 347888899999999999988874
No 63
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=26.32 E-value=52 Score=22.63 Aligned_cols=20 Identities=35% Similarity=0.655 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 021208 186 KYLKQLQEKVKILEEQANKK 205 (316)
Q Consensus 186 ~YIk~Lq~~v~~L~~~~~~~ 205 (316)
.||..|+.+|..|+.+....
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L 41 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTL 41 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78899999999888876543
No 64
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=25.51 E-value=1.3e+02 Score=23.15 Aligned_cols=60 Identities=17% Similarity=0.283 Sum_probs=40.4
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhccc--------------------CCCC-CCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 021208 143 NTQDHIIAERKRREKLSQRFIALSAIV--------------------PGLK-KMDKASVLGDAIKYLKQLQEKVKILEEQ 201 (316)
Q Consensus 143 ~~~~h~~~Er~RR~~in~~~~~Lrslv--------------------P~~~-k~dKasiL~~Ai~YIk~Lq~~v~~L~~~ 201 (316)
.-.+|...|||| .+|..++..|..=| |..+ ...-..-|.++..-|..|+..+..++.-
T Consensus 6 ~d~s~LPpeqRk-kkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~ 84 (98)
T 2ke4_A 6 EDFSHLPPEQQR-KRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAW 84 (98)
T ss_dssp SCSSSSCHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778744 48888888877655 3221 1122345888888999999999888875
Q ss_pred Hh
Q 021208 202 AN 203 (316)
Q Consensus 202 ~~ 203 (316)
+.
T Consensus 85 L~ 86 (98)
T 2ke4_A 85 LA 86 (98)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 65
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=25.50 E-value=1.2e+02 Score=22.24 Aligned_cols=22 Identities=9% Similarity=0.219 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 021208 185 IKYLKQLQEKVKILEEQANKKT 206 (316)
Q Consensus 185 i~YIk~Lq~~v~~L~~~~~~~~ 206 (316)
-.||..|+.+++.||..+....
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~ 68 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYG 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3599999999999999887643
No 66
>3f0d_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; ssgcid, niaid, isoprene biosynthe lyase, metal-binding, structural genomics; 1.20A {Burkholderia pseudomallei} PDB: 3f0e_A 3f0f_A* 3f0g_A* 3ieq_A* 3iew_A* 3jvh_A* 3k14_A* 3k2x_A* 3ke1_A* 3mbm_A* 3p0z_A* 3p10_A* 3q8h_A* 3qhd_A* 3ikf_A* 3ike_A*
Probab=25.39 E-value=1.2e+02 Score=26.16 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 257 VFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 257 ll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
+|.++++.+++.|..|.| +++||++|...-.. -.+++.++|-.+|
T Consensus 99 lL~~~~~lv~~~G~~I~N----------vD~tIiaq~PKl~p-~~~~mr~~la~~L 143 (183)
T 3f0d_A 99 LLRECASRVAQAGFAIRN----------VDSTIIAQAPKLAP-HIDAMRANIAADL 143 (183)
T ss_dssp HHHHHHHHHHHTTEEEEE----------EEEEEECSSSCCGG-GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEE----------EEEEEEcCCCcchh-HHHHHHHHHHHHH
Confidence 799999999999999999 56788888765433 4667777777665
No 67
>1iv3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, non-mevalonate, riken structural genomics/proteomics initiative, RSGI; 1.52A {Thermus thermophilus} SCOP: d.79.5.1 PDB: 1iv2_A 1iv4_A* 1iv1_A
Probab=24.83 E-value=1.2e+02 Score=25.33 Aligned_cols=45 Identities=11% Similarity=0.087 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 257 VFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 257 ll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
+|.++++.+++.|..|.| +++||++|.+.-.. -.+++.++|-++|
T Consensus 76 lL~~~~~~~~~~G~~i~N----------vD~tii~q~PKi~p-~~~~m~~~ia~~L 120 (152)
T 1iv3_A 76 FLREAMRLVEARGAKLLQ----------ASLVLTLDRPKLGP-HRKALVDSLSRLM 120 (152)
T ss_dssp HHHHHHHHHHHTTCCEEE----------EEEEEECSSSCCGG-GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEE----------EEEEEEecCCcCHH-HHHHHHHHHHHHh
Confidence 689999999999999999 55788888665333 4567777776665
No 68
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=23.99 E-value=75 Score=29.48 Aligned_cols=54 Identities=15% Similarity=0.271 Sum_probs=42.2
Q ss_pred eEEEEEEecCCCCH-HHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHH
Q 021208 244 SVLIRVHCEKRKGV-FEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHS 310 (316)
Q Consensus 244 ~v~I~I~c~k~~gl-l~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~ 310 (316)
++-|.+||-+.-|+ +...+.+++. |.+++++++..+|++ -.+...++|+-.|+.
T Consensus 213 ~~~i~~H~Hnd~GlA~AN~laAv~a-Ga~~vd~tv~GlG~~------------aGN~~~E~lv~~L~~ 267 (337)
T 3ble_A 213 DIHFEFHGHNDYDLSVANSLQAIRA-GVKGLHASINGLGER------------AGNTPLEALVTTIHD 267 (337)
T ss_dssp TSCEEEECBCTTSCHHHHHHHHHHT-TCSEEEEBGGGCSST------------TCBCBHHHHHHHHHH
T ss_pred CCeEEEEecCCcchHHHHHHHHHHh-CCCEEEEeccccccc------------ccchhHHHHHHHHHH
Confidence 45688999999887 8899999986 999999999888873 334566666666654
No 69
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=23.04 E-value=66 Score=31.37 Aligned_cols=51 Identities=8% Similarity=0.128 Sum_probs=36.5
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEec
Q 021208 244 SVLIRVHCEKRKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMD 294 (316)
Q Consensus 244 ~v~I~I~c~k~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~ 294 (316)
...|-+..++++|.|.++|..+...|+.+..-..-+..+..-.+.|-+.++
T Consensus 34 KTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~e 84 (429)
T 1phz_A 34 AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLD 84 (429)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBC
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEe
Confidence 344445567889999999999999999987777767655444444555554
No 70
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=22.94 E-value=52 Score=23.95 Aligned_cols=18 Identities=33% Similarity=0.320 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021208 185 IKYLKQLQEKVKILEEQA 202 (316)
Q Consensus 185 i~YIk~Lq~~v~~L~~~~ 202 (316)
-.||+.|+.+|..|+...
T Consensus 28 ~~~i~~LE~~v~~le~~~ 45 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELH 45 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356666666666665533
No 71
>2uzh_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; ISPF, lyase, mycobacteria, complex with CDP; HET: CDP IPE; 2.2A {Mycobacterium smegmatis}
Probab=22.01 E-value=1.3e+02 Score=25.51 Aligned_cols=45 Identities=11% Similarity=0.086 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 257 VFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 257 ll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
+|..+++.+++.|..|.| +++||++|...-.. -.+++.++|-++|
T Consensus 81 lL~~~~~~v~~~G~~i~N----------vD~tii~q~PKi~p-~~~~m~~~ia~~L 125 (165)
T 2uzh_A 81 MIRHVRGLVENAGFVIGN----------ATVQVIGNRPKVGP-RREEAQQVLSELV 125 (165)
T ss_dssp HHHHHHHHHHHTTEEEEE----------EEEEEESSSSCCGG-GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEE----------EEEEEEcCCCcchH-HHHHHHHHHHHHh
Confidence 688999999999999999 45778887655332 4567777776665
No 72
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=21.98 E-value=1.4e+02 Score=28.94 Aligned_cols=68 Identities=19% Similarity=0.301 Sum_probs=44.4
Q ss_pred EEEEeCCeEEEEEEecC---CCCHHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 237 EARFCDKSVLIRVHCEK---RKGVFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 237 ev~v~~~~v~I~I~c~k---~~gll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
++.+..+-..|.|.... ++|.+.+++++|.+.|+.|.-. ++|.+-..+.++.. .. ..+..++.|+.+|
T Consensus 397 ~v~~~~~~a~vsvVG~gm~~~~Gvaak~f~aL~~~~InI~mi---sqgtSe~~Is~vV~--~~---d~~~Av~aLh~~f 467 (473)
T 3c1m_A 397 DVSVDKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMI---AQGSSEVNISFVID--EK---DLLNCVRKLHEKF 467 (473)
T ss_dssp EEEEEEEEEEEEEECTTTTTCTTHHHHHHHHHHHHTCCCCEE---EESSCSSEEEEEEE--GG---GHHHHHHHHHHHH
T ss_pred eEEEeCCcEEEEEEecCCCCChhHHHHHHHHHHHCCCCEEEE---ecCCCCceEEEEEc--HH---HHHHHHHHHHHHH
Confidence 34555566678887653 6799999999999999888332 34444333333333 32 3567777888776
No 73
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=21.86 E-value=1.6e+02 Score=24.29 Aligned_cols=51 Identities=12% Similarity=0.231 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCCCCCCCCCCCCCCCeeEEEEeCCeEEEEEEe
Q 021208 181 LGDAIKYLKQLQEKVKILEEQANKKTIESVVFVNKTQLSDEGDNPNGAFNEALPEIEARFCDKSVLIRVHC 251 (316)
Q Consensus 181 L~~Ai~YIk~Lq~~v~~L~~~~~~~~~es~~~~kk~~~~~~~~~s~~~~~~~~p~Vev~v~~~~v~I~I~c 251 (316)
+.+.++-.+++|++.++++++++....+.. ...--|+|.+.|+.-++.|..
T Consensus 43 m~~mmkQAQkmQ~km~k~QeeL~~~eveg~--------------------sGgGlVkVtvnG~~ev~~I~I 93 (143)
T 1ybx_A 43 INNLVKQAQKMQRDMERVQEELKEKTVEAS--------------------AGGGAVTVVATGRKDIKEITI 93 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCEEEEE--------------------ETTTTEEEEEETTCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCEEEEE--------------------ECCCEEEEEEecCceEEEEEE
Confidence 345666778899999999998887554322 011257788877766655554
No 74
>1gx1_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, lyase, isoprene biosynthesis; HET: CDP; 1.8A {Escherichia coli} SCOP: d.79.5.1 PDB: 1h47_A* 1h48_A* 3ern_A* 3eor_A* 3elc_A* 3esj_A* 3fba_A* 2amt_A* 1knj_A* 1knk_A 1u3l_A* 1u3p_A 1u40_A* 1u43_A* 1jy8_A* 2gzl_A* 1yqn_A* 3ghz_A* 3t80_A*
Probab=21.77 E-value=1.4e+02 Score=25.22 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhCCCeEEEEEEEEeCCeEEEEEEEEEecCCcccCHHHHHHHHHHHH
Q 021208 257 VFEKIVAEIEKLHLTVINSSVMTFGSSVLDVTIIAQMDVEFNMTVKDLVKNLHSAF 312 (316)
Q Consensus 257 ll~~Il~~Le~lgL~Vv~asvs~~g~~~l~~ti~aq~~~~~~ls~~eL~~~L~~al 312 (316)
+|..+++.+++.|..|.| +++||++|.+.-.. -.+++.++|-.+|
T Consensus 77 lL~~~~~~v~~~G~~i~N----------vD~tii~q~PKi~p-~~~~m~~~ia~~L 121 (160)
T 1gx1_A 77 LLREAWRRIQAKGYTLGN----------VDVTIIAQAPKMLP-HIPQMRVFIAEDL 121 (160)
T ss_dssp HHHHHHHHHHHTTCEEEE----------EEEEEECSSSCCGG-GHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCEEEE----------EEEEEEcCCCcchH-HHHHHHHHHHHHh
Confidence 689999999999999999 45788888665332 4556666666554
No 75
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=21.19 E-value=35 Score=24.40 Aligned_cols=20 Identities=45% Similarity=0.522 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 021208 185 IKYLKQLQEKVKILEEQANK 204 (316)
Q Consensus 185 i~YIk~Lq~~v~~L~~~~~~ 204 (316)
-.||..|+.+|+.||..+..
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~ 76 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999976543
No 76
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.03 E-value=1.3e+02 Score=19.32 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=24.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021208 175 MDKASVLGDAIKYLKQLQEKVKILEEQANK 204 (316)
Q Consensus 175 ~dKasiL~~Ai~YIk~Lq~~v~~L~~~~~~ 204 (316)
+..+.-|+++-+-|..|+.+++.|++++..
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567899999999999999999987653
No 77
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=20.66 E-value=2.1e+02 Score=22.29 Aligned_cols=52 Identities=10% Similarity=0.096 Sum_probs=37.3
Q ss_pred CCeEEEEEEecCCCCHHHHHHHHHHhC---CCeEEEEEEEEeCCeEEEEEEEEEecC
Q 021208 242 DKSVLIRVHCEKRKGVFEKIVAEIEKL---HLTVINSSVMTFGSSVLDVTIIAQMDV 295 (316)
Q Consensus 242 ~~~v~I~I~c~k~~gll~~Il~~Le~l---gL~Vv~asvs~~g~~~l~~ti~aq~~~ 295 (316)
..++.+||.....+++...|+++++.+ +.++ ..+-+.- |+...++|.+.+..
T Consensus 34 Pc~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~-GkY~Svtv~v~v~S 88 (109)
T 1rwu_A 34 PTPFTYKVMGQALPELVDQVVEVVQRHAPGDYTP-TVKPSSK-GNYHSVSITINATH 88 (109)
T ss_dssp CCCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE-EEEESSC-SSEEEEEEEECCSS
T ss_pred CCCceEEEEEECcHHHHHHHHHHHHHhCCCCCCc-eecCCCC-CeEEEEEEEEEECC
Confidence 457889999999999999999999987 5665 4444444 44455777655533
Done!