Query 021209
Match_columns 316
No_of_seqs 151 out of 393
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 08:28:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021209.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021209hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00249 Myb_DNA-binding: Myb- 99.1 7.2E-11 1.6E-15 83.1 5.3 48 186-236 1-48 (48)
2 smart00717 SANT SANT SWI3, AD 98.8 7.5E-09 1.6E-13 69.0 5.7 47 187-237 2-48 (49)
3 cd00167 SANT 'SWI3, ADA2, N-Co 98.8 1.7E-08 3.7E-13 66.6 5.5 45 188-236 1-45 (45)
4 PLN03212 Transcription repress 98.6 8E-08 1.7E-12 90.3 6.8 64 173-239 12-75 (249)
5 PF13921 Myb_DNA-bind_6: Myb-l 98.6 9.6E-08 2.1E-12 69.2 4.7 44 189-237 1-44 (60)
6 PLN03091 hypothetical protein; 98.3 1E-06 2.2E-11 88.6 6.0 52 185-239 13-64 (459)
7 KOG0048 Transcription factor, 98.1 7.8E-06 1.7E-10 74.8 6.3 51 186-239 9-59 (238)
8 PLN03212 Transcription repress 98.0 1.1E-05 2.4E-10 76.1 5.7 51 185-240 77-127 (249)
9 TIGR01557 myb_SHAQKYF myb-like 97.8 4.2E-05 9.1E-10 57.4 5.3 46 184-231 1-49 (57)
10 PLN03091 hypothetical protein; 97.8 3.4E-05 7.5E-10 77.9 6.1 48 186-238 67-114 (459)
11 KOG0457 Histone acetyltransfer 97.5 0.00014 3.1E-09 73.2 5.4 48 188-239 74-121 (438)
12 PF13837 Myb_DNA-bind_4: Myb/S 97.4 0.00016 3.5E-09 55.2 3.8 54 186-239 1-67 (90)
13 KOG0048 Transcription factor, 96.9 0.0019 4.1E-08 59.3 5.7 49 186-239 62-110 (238)
14 PF13873 Myb_DNA-bind_5: Myb/S 96.8 0.0041 8.9E-08 47.2 6.4 53 187-239 3-72 (78)
15 PF13325 MCRS_N: N-terminal re 96.7 0.0018 4E-08 59.6 4.6 63 184-246 71-136 (199)
16 KOG0051 RNA polymerase I termi 96.6 0.0027 5.8E-08 66.5 4.8 51 185-241 383-433 (607)
17 KOG0049 Transcription factor, 96.3 0.0054 1.2E-07 65.3 5.3 51 185-239 359-409 (939)
18 PF09111 SLIDE: SLIDE; InterP 96.2 0.0057 1.2E-07 51.9 3.9 55 185-239 48-113 (118)
19 KOG0049 Transcription factor, 96.0 0.0069 1.5E-07 64.5 4.1 54 182-239 408-461 (939)
20 COG5114 Histone acetyltransfer 95.6 0.062 1.3E-06 53.6 8.7 48 188-239 65-112 (432)
21 PLN03142 Probable chromatin-re 93.6 0.12 2.5E-06 57.5 5.9 55 185-239 925-987 (1033)
22 KOG4282 Transcription factor G 92.7 0.24 5.3E-06 47.3 5.9 54 186-239 54-116 (345)
23 KOG1279 Chromatin remodeling f 92.2 0.19 4.2E-06 52.0 4.8 48 184-236 251-298 (506)
24 COG5259 RSC8 RSC chromatin rem 91.0 0.26 5.7E-06 51.0 4.3 46 186-236 279-324 (531)
25 KOG0050 mRNA splicing protein 90.7 0.2 4.4E-06 52.5 3.2 47 187-237 8-54 (617)
26 COG5147 REB1 Myb superfamily p 90.6 0.13 2.9E-06 53.3 1.8 50 185-240 290-339 (512)
27 COG5147 REB1 Myb superfamily p 89.8 0.48 1E-05 49.3 5.0 78 184-278 18-96 (512)
28 PF08914 Myb_DNA-bind_2: Rap1 88.5 1 2.2E-05 34.7 4.8 49 186-237 2-58 (65)
29 KOG0051 RNA polymerase I termi 86.9 1.6 3.5E-05 46.4 6.7 55 184-242 434-514 (607)
30 PF12776 Myb_DNA-bind_3: Myb/S 85.7 1.5 3.3E-05 33.8 4.4 50 188-237 1-63 (96)
31 KOG2656 DNA methyltransferase 84.3 0.63 1.4E-05 47.4 2.2 52 187-239 131-188 (445)
32 PF08074 CHDCT2: CHDCT2 (NUC03 82.2 1 2.2E-05 41.2 2.4 47 186-232 3-58 (173)
33 PF04504 DUF573: Protein of un 81.0 3.7 8E-05 33.7 5.1 54 185-238 3-64 (98)
34 KOG0384 Chromodomain-helicase 75.2 1.6 3.4E-05 50.0 1.7 55 185-239 1132-1194(1373)
35 COG5118 BDP1 Transcription ini 69.6 8.5 0.00018 39.7 5.2 55 178-238 358-412 (507)
36 KOG0050 mRNA splicing protein 48.8 22 0.00047 38.0 4.1 45 187-237 60-104 (617)
37 smart00595 MADF subfamily of S 39.8 32 0.00069 26.2 2.9 25 208-237 29-53 (89)
38 PF09420 Nop16: Ribosome bioge 39.3 73 0.0016 28.0 5.4 52 184-236 112-163 (164)
39 cd01187 INT_SG4 INT_SG4, DNA b 36.2 1.2E+02 0.0026 27.2 6.4 82 185-270 98-187 (299)
40 KOG3554 Histone deacetylase co 28.9 40 0.00087 35.9 2.4 53 185-238 284-336 (693)
41 PF07128 DUF1380: Protein of u 28.1 72 0.0016 28.5 3.5 20 256-275 87-106 (139)
42 cd02135 Arsenite_oxidase Nitro 26.9 76 0.0016 26.0 3.3 35 251-285 11-45 (160)
43 PF10545 MADF_DNA_bdg: Alcohol 23.3 87 0.0019 22.9 2.7 27 208-237 28-54 (85)
44 KOG1194 Predicted DNA-binding 20.7 1.9E+02 0.004 30.9 5.3 47 186-237 187-233 (534)
No 1
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.14 E-value=7.2e-11 Score=83.13 Aligned_cols=48 Identities=29% Similarity=0.603 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHh
Q 021209 186 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 236 (316)
Q Consensus 186 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~ 236 (316)
+.+||++|++.|++||.+||.++|..|...+. .+||..+|+++|++++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~---~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMP---GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHS---SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcC---CCCCHHHHHHHHHhhC
Confidence 45899999999999999999988999999874 4999999999999985
No 2
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.84 E-value=7.5e-09 Score=69.04 Aligned_cols=47 Identities=34% Similarity=0.669 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 021209 187 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 237 (316)
Q Consensus 187 r~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K 237 (316)
.+||.+|++.|+.+|.+||.++|..|...+ .+||..+|+++|.++++
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~----~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKEL----PGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHc----CCCCHHHHHHHHHHHcC
Confidence 579999999999999999977999999875 59999999999999874
No 3
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.77 E-value=1.7e-08 Score=66.60 Aligned_cols=45 Identities=38% Similarity=0.801 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHh
Q 021209 188 MWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 236 (316)
Q Consensus 188 ~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~ 236 (316)
+||.+|++.|+.++.+||.++|..|...+ .+||..+|+++|.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~----~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKEL----PGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHc----CCCCHHHHHHHHHHhC
Confidence 59999999999999999988999999875 4699999999999874
No 4
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.60 E-value=8e-08 Score=90.33 Aligned_cols=64 Identities=25% Similarity=0.357 Sum_probs=50.8
Q ss_pred ccccCcccccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhh
Q 021209 173 RKRKSKIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 239 (316)
Q Consensus 173 tk~~~~~~~rRK~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s 239 (316)
|+++++--+.--++.+||+||++.|+..|++||.++|..|..... .+||+.+|+++|.|.+.-.
T Consensus 12 ~~~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g---~gRT~KQCReRW~N~L~P~ 75 (249)
T PLN03212 12 KKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAG---LLRCGKSCRLRWMNYLRPS 75 (249)
T ss_pred CCCCCCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhh---cCCCcchHHHHHHHhhchh
Confidence 344443333334477899999999999999999999999987542 5899999999999999644
No 5
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.56 E-value=9.6e-08 Score=69.18 Aligned_cols=44 Identities=39% Similarity=0.795 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 021209 189 WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 237 (316)
Q Consensus 189 WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K 237 (316)
||.+|++.|+.+|.+||. +|..|...+ .+||..+|++||++.++
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l----~~Rt~~~~~~r~~~~l~ 44 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAEHL----GNRTPKQCRNRWRNHLR 44 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHHHS----TTS-HHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHHHH----CcCCHHHHHHHHHHHCc
Confidence 999999999999999995 999998874 47999999999999553
No 6
>PLN03091 hypothetical protein; Provisional
Probab=98.29 E-value=1e-06 Score=88.61 Aligned_cols=52 Identities=27% Similarity=0.547 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhh
Q 021209 185 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 239 (316)
Q Consensus 185 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s 239 (316)
++.+||.||++.|+..|++||.++|..|..... .+||+.+|+++|.|.+.-.
T Consensus 13 rKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g---~gRT~KQCRERW~NyLdP~ 64 (459)
T PLN03091 13 RKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAG---LQRCGKSCRLRWINYLRPD 64 (459)
T ss_pred cCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhc---cCcCcchHhHHHHhccCCc
Confidence 456799999999999999999999999987542 5899999999999988643
No 7
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.05 E-value=7.8e-06 Score=74.80 Aligned_cols=51 Identities=29% Similarity=0.423 Sum_probs=46.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhh
Q 021209 186 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 239 (316)
Q Consensus 186 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s 239 (316)
+-+||+||++.|++-|++||.|+|..|.+... + +|++..|+-+|-|.++-.
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~g--l-~R~GKSCRlRW~NyLrP~ 59 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLAG--L-RRCGKSCRLRWTNYLRPD 59 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhhhcC--C-CccchHHHHHhhcccCCC
Confidence 57999999999999999999999999999763 1 999999999999998744
No 8
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.97 E-value=1.1e-05 Score=76.09 Aligned_cols=51 Identities=20% Similarity=0.278 Sum_probs=45.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhhh
Q 021209 185 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 240 (316)
Q Consensus 185 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s~ 240 (316)
.+.+||.||++.|++.+.+||. +|+.|... |.+||..++|.+|.++++...
T Consensus 77 ~kgpWT~EED~lLlel~~~~Gn-KWs~IAk~----LpGRTDnqIKNRWns~LrK~l 127 (249)
T PLN03212 77 KRGGITSDEEDLILRLHRLLGN-RWSLIAGR----IPGRTDNEIKNYWNTHLRKKL 127 (249)
T ss_pred ccCCCChHHHHHHHHHHHhccc-cHHHHHhh----cCCCCHHHHHHHHHHHHhHHH
Confidence 3468999999999999999995 99999885 479999999999999987653
No 9
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.81 E-value=4.2e-05 Score=57.38 Aligned_cols=46 Identities=17% Similarity=0.349 Sum_probs=37.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCh---HHHHHHhcCCCCCCChhhHHHH
Q 021209 184 KNQRMWTLSEVMKLIDGISQFGVGKW---TDIKRLLFSSSSHRTPIDLRDK 231 (316)
Q Consensus 184 K~rr~WT~EEveaLv~GVeKyG~G~W---~~Il~~~f~~f~~RT~VDLKDK 231 (316)
|++..||+||-+.+++||+.||.|+| +.|+..+.. .+.|..+++-.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~--~~lT~~qV~SH 49 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVV--DGLTRDQVASH 49 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCC--CCCCHHHHHHH
Confidence 45778999999999999999999999 999987631 23388887743
No 10
>PLN03091 hypothetical protein; Provisional
Probab=97.79 E-value=3.4e-05 Score=77.88 Aligned_cols=48 Identities=19% Similarity=0.416 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 021209 186 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 238 (316)
Q Consensus 186 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~ 238 (316)
+.+||.||++.|++.+++||. +|+.|... |.+||..++|.+|..+++.
T Consensus 67 KgpWT~EED~lLLeL~k~~Gn-KWskIAk~----LPGRTDnqIKNRWnslLKK 114 (459)
T PLN03091 67 RGTFSQQEENLIIELHAVLGN-RWSQIAAQ----LPGRTDNEIKNLWNSCLKK 114 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCc-chHHHHHh----cCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999997 99999975 3799999999999998864
No 11
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.48 E-value=0.00014 Score=73.19 Aligned_cols=48 Identities=23% Similarity=0.558 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhh
Q 021209 188 MWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 239 (316)
Q Consensus 188 ~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s 239 (316)
-||.+|+..|++|++.||.|||.+|.+.. ..+|.-++|+.|.++.--+
T Consensus 74 ~WtadEEilLLea~~t~G~GNW~dIA~hI----GtKtkeeck~hy~k~fv~s 121 (438)
T KOG0457|consen 74 SWTADEEILLLEAAETYGFGNWQDIADHI----GTKTKEECKEHYLKHFVNS 121 (438)
T ss_pred CCChHHHHHHHHHHHHhCCCcHHHHHHHH----cccchHHHHHHHHHHHhcC
Confidence 49999999999999999999999999986 3899999999999988544
No 12
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=97.41 E-value=0.00016 Score=55.24 Aligned_cols=54 Identities=33% Similarity=0.563 Sum_probs=36.5
Q ss_pred CCCCCHHHHHHHHHHHhh------cCC-----C--ChHHHHHHhcCCCCCCChhhHHHHHHHHhhhh
Q 021209 186 QRMWTLSEVMKLIDGISQ------FGV-----G--KWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 239 (316)
Q Consensus 186 rr~WT~EEveaLv~GVeK------yG~-----G--~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s 239 (316)
|..||.+|+.+|++.+.. ++. + -|..|...+...=-.||+.+|++||.||.+.-
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Y 67 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKY 67 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 468999999999999887 221 1 49999987532113799999999999999743
No 13
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=96.88 E-value=0.0019 Score=59.34 Aligned_cols=49 Identities=20% Similarity=0.367 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhh
Q 021209 186 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 239 (316)
Q Consensus 186 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s 239 (316)
+..||+||++.|+++...||- +|+.|...+ ++||--++|.-|..-+|..
T Consensus 62 rg~fT~eEe~~Ii~lH~~~GN-rWs~IA~~L----PGRTDNeIKN~Wnt~lkkk 110 (238)
T KOG0048|consen 62 RGNFSDEEEDLIIKLHALLGN-RWSLIAGRL----PGRTDNEVKNHWNTHLKKK 110 (238)
T ss_pred CCCCCHHHHHHHHHHHHHHCc-HHHHHHhhC----CCcCHHHHHHHHHHHHHHH
Confidence 568999999999999999997 999999874 7999999999998887644
No 14
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=96.84 E-value=0.0041 Score=47.15 Aligned_cols=53 Identities=21% Similarity=0.362 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHhhc-----CC-----------CChHHHHHHhcCCC-CCCChhhHHHHHHHHhhhh
Q 021209 187 RMWTLSEVMKLIDGISQF-----GV-----------GKWTDIKRLLFSSS-SHRTPIDLRDKWRNLLRAS 239 (316)
Q Consensus 187 r~WT~EEveaLv~GVeKy-----G~-----------G~W~~Il~~~f~~f-~~RT~VDLKDKWRNL~K~s 239 (316)
..||.+|.+.|++-|++| |. .-|..|...+-... ..||..+|+.+|.||....
T Consensus 3 ~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~ 72 (78)
T PF13873_consen 3 PNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKA 72 (78)
T ss_pred CCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 469999999999999998 31 24999999874332 4999999999999998643
No 15
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=96.74 E-value=0.0018 Score=59.58 Aligned_cols=63 Identities=16% Similarity=0.170 Sum_probs=53.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhcC--CCChHHHHHHhcCCC-CCCChhhHHHHHHHHhhhhhcccccC
Q 021209 184 KNQRMWTLSEVMKLIDGISQFG--VGKWTDIKRLLFSSS-SHRTPIDLRDKWRNLLRASYAHQKNK 246 (316)
Q Consensus 184 K~rr~WT~EEveaLv~GVeKyG--~G~W~~Il~~~f~~f-~~RT~VDLKDKWRNL~K~s~~~~~~r 246 (316)
..+-+||.+|++.|..+..... ...+.+|+..+.++| ..||+.+|.+.|+.|.++..++.+..
T Consensus 71 q~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL~DQ~v 136 (199)
T PF13325_consen 71 QSKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLLPDQSV 136 (199)
T ss_pred cccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchhhcccc
Confidence 3567899999999999887764 568999999998888 77999999999999999887766644
No 16
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=96.55 E-value=0.0027 Score=66.52 Aligned_cols=51 Identities=29% Similarity=0.642 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhhhc
Q 021209 185 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 241 (316)
Q Consensus 185 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s~~ 241 (316)
.+-.||+||++.|..-|.++|. .|+.|-+.. +|.+.+|+|+||+.++.+..
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~~l-----gr~P~~crd~wr~~~~~g~~ 433 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGKAL-----GRMPMDCRDRWRQYVKCGSK 433 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhcc-cHHHHHHHH-----ccCcHHHHHHHHHhhccccc
Confidence 4557999999999999999996 999999875 89999999999999998754
No 17
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=96.31 E-value=0.0054 Score=65.28 Aligned_cols=51 Identities=24% Similarity=0.559 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhh
Q 021209 185 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 239 (316)
Q Consensus 185 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s 239 (316)
++-+||.+|+..|+.+|++||.--|..|... |.+|+-.+|+|+|-|.+..+
T Consensus 359 khg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~----vPnRSdsQcR~RY~nvL~~s 409 (939)
T KOG0049|consen 359 KHGRWTDQEDVLLVCAVSRYGAKDWAKVRQA----VPNRSDSQCRERYTNVLNRS 409 (939)
T ss_pred cCCCCCCHHHHHHHHHHHHhCccchhhHHHh----cCCccHHHHHHHHHHHHHHh
Confidence 4668999999999999999999999999876 47999999999999887543
No 18
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=96.18 E-value=0.0057 Score=51.95 Aligned_cols=55 Identities=24% Similarity=0.487 Sum_probs=45.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCC---CChHHHHHHh-------cCC-CCCCChhhHHHHHHHHhhhh
Q 021209 185 NQRMWTLSEVMKLIDGISQFGV---GKWTDIKRLL-------FSS-SSHRTPIDLRDKWRNLLRAS 239 (316)
Q Consensus 185 ~rr~WT~EEveaLv~GVeKyG~---G~W~~Il~~~-------f~~-f~~RT~VDLKDKWRNL~K~s 239 (316)
..+.||.+|+..|+--|.+||. |.|..|+... |+. |..||+.+|..+-..|+++-
T Consensus 48 ~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i 113 (118)
T PF09111_consen 48 KKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI 113 (118)
T ss_dssp S-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence 3568999999999999999999 9999999873 443 49999999999999999863
No 19
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=95.96 E-value=0.0069 Score=64.51 Aligned_cols=54 Identities=30% Similarity=0.538 Sum_probs=44.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhh
Q 021209 182 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 239 (316)
Q Consensus 182 rRK~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s 239 (316)
++-+.-.||..|++.|+..|++||.|+|.+|...+ .+||..++..+-+-++.+.
T Consensus 408 ~s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~L----p~~t~~q~~rrR~R~~~~k 461 (939)
T KOG0049|consen 408 RSAKVERWTLVEDEQLLYAVKVYGKGNWAKCAMLL----PKKTSRQLRRRRLRLIAAK 461 (939)
T ss_pred HhhccCceeecchHHHHHHHHHHccchHHHHHHHc----cccchhHHHHHHHHHHHHH
Confidence 34456679999999999999999999999998754 7999988877776666543
No 20
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=95.57 E-value=0.062 Score=53.60 Aligned_cols=48 Identities=23% Similarity=0.590 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhh
Q 021209 188 MWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 239 (316)
Q Consensus 188 ~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s 239 (316)
-|+..|+-.|++|.+..|.|||.+|.+.. ..|+.-++|+.|-.+.--+
T Consensus 65 ~WgadEEllli~~~~TlGlGNW~dIadyi----Gsr~kee~k~HylK~y~es 112 (432)
T COG5114 65 GWGADEELLLIECLDTLGLGNWEDIADYI----GSRAKEEIKSHYLKMYDES 112 (432)
T ss_pred CcCchHHHHHHHHHHhcCCCcHHHHHHHH----hhhhhHHHHHHHHHHHhhc
Confidence 49999999999999999999999999864 4799999999998777533
No 21
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=93.64 E-value=0.12 Score=57.50 Aligned_cols=55 Identities=20% Similarity=0.425 Sum_probs=47.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHh-------cCC-CCCCChhhHHHHHHHHhhhh
Q 021209 185 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLL-------FSS-SSHRTPIDLRDKWRNLLRAS 239 (316)
Q Consensus 185 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~-------f~~-f~~RT~VDLKDKWRNL~K~s 239 (316)
+.+.||.+|+..|+-.+.+||.|+|..|+... |+. |..||+.+|+.+-..|++.-
T Consensus 925 ~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~~~ 987 (1033)
T PLN03142 925 KGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIRLI 987 (1033)
T ss_pred CCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHHHH
Confidence 35679999999999999999999999998763 444 49999999999999999864
No 22
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=92.70 E-value=0.24 Score=47.35 Aligned_cols=54 Identities=24% Similarity=0.449 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHhhc----CCCC-----hHHHHHHhcCCCCCCChhhHHHHHHHHhhhh
Q 021209 186 QRMWTLSEVMKLIDGISQF----GVGK-----WTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 239 (316)
Q Consensus 186 rr~WT~EEveaLv~GVeKy----G~G~-----W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s 239 (316)
...|+.+|+.+||+...+. ..|+ |..|.......=-.||+++||.||.||.+..
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Y 116 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKY 116 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 6789999999999887643 4455 9999985432236899999999999999743
No 23
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=92.18 E-value=0.19 Score=52.03 Aligned_cols=48 Identities=19% Similarity=0.401 Sum_probs=42.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHh
Q 021209 184 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 236 (316)
Q Consensus 184 K~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~ 236 (316)
.....||..|.-.|++||++||. .|.+|..+- ..||.-||=.|+..|=
T Consensus 251 ~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hV----g~ks~eqCI~kFL~LP 298 (506)
T KOG1279|consen 251 SARPNWTEQETLLLLEAIEMYGD-DWNKVADHV----GTKSQEQCILKFLRLP 298 (506)
T ss_pred cCCCCccHHHHHHHHHHHHHhcc-cHHHHHhcc----CCCCHHHHHHHHHhcC
Confidence 45678999999999999999997 999998875 5999999999998764
No 24
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=91.01 E-value=0.26 Score=51.02 Aligned_cols=46 Identities=22% Similarity=0.517 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHh
Q 021209 186 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 236 (316)
Q Consensus 186 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~ 236 (316)
-.+||.+|.-.|++||+.||. .|.+|..+. ..+|.-||=-++-+|=
T Consensus 279 dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HV----gtKt~EqCIl~FL~LP 324 (531)
T COG5259 279 DKNWSRQELLLLLEGIEMYGD-DWDKVARHV----GTKTKEQCILHFLQLP 324 (531)
T ss_pred cccccHHHHHHHHHHHHHhhh-hHHHHHHHh----CCCCHHHHHHHHHcCC
Confidence 458999999999999999997 999999875 5899999987776653
No 25
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=90.74 E-value=0.2 Score=52.47 Aligned_cols=47 Identities=23% Similarity=0.580 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 021209 187 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 237 (316)
Q Consensus 187 r~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K 237 (316)
--|+..|++.|..+|.+||...|+.|...| +.-|+-+|+-+|--.+-
T Consensus 8 gvwrntEdeilkaav~kyg~nqws~i~sll----~~kt~rqC~~rw~e~ld 54 (617)
T KOG0050|consen 8 GVWRNTEDEVLKAAVMKYGKNQWSRIASLL----NRKTARQCKARWEEWLD 54 (617)
T ss_pred ceecccHHHHHHHHHHHcchHHHHHHHHHH----hhcchhHHHHHHHHHhC
Confidence 469999999999999999999999999886 67899999999975543
No 26
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=90.64 E-value=0.13 Score=53.30 Aligned_cols=50 Identities=34% Similarity=0.683 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhhh
Q 021209 185 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 240 (316)
Q Consensus 185 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s~ 240 (316)
.+..||.+|+..|..-|.++|. .|+.|.... +|-+.||.|+||+.++.+.
T Consensus 290 ~~~~wt~e~~~eL~~~~~~~~~-~w~~ig~~~-----~rmp~~crd~wr~~~~~g~ 339 (512)
T COG5147 290 QRGKWTKEEEQELAKLVVEHGG-SWTEIGKLL-----GRMPNDCRDRWRDYVKCGD 339 (512)
T ss_pred hhccCccccccccccccccccc-hhhHhhhhh-----ccCcHHHHHHHhhhccccC
Confidence 3456999999999999999995 999998864 8999999999999999873
No 27
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=89.79 E-value=0.48 Score=49.31 Aligned_cols=78 Identities=18% Similarity=0.259 Sum_probs=59.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhhhcccccCCCCCccccccCCCHHHH
Q 021209 184 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSLPKPVL 263 (316)
Q Consensus 184 K~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s~~~~~~r~~~e~K~~~~~iP~~lL 263 (316)
+..-.|+..|++.|.-+|++||..+|+.|...| ..+|+-|++-+|-|.+. |+..++. .-.+..
T Consensus 18 ~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~----~~~~~kq~~~rw~~~ln----p~lk~~~---------~~~eed 80 (512)
T COG5147 18 RKGGSWKRTEDEDLKALVKKLGPNNWSKVASLL----ISSTGKQSSNRWNNHLN----PQLKKKN---------WSEEED 80 (512)
T ss_pred ecCCCCCCcchhHHHHHHhhcccccHHHHHHHh----cccccccccchhhhhhc----hhccccc---------ccHHHH
Confidence 344589999999999999999999999999876 45999999999944332 2222322 356778
Q ss_pred HHHHHHHhhCCC-CCC
Q 021209 264 CRIRELATIHPY-PRV 278 (316)
Q Consensus 264 ~RVreLa~~~py-p~~ 278 (316)
.++..|+..+++ |..
T Consensus 81 ~~li~l~~~~~~~wst 96 (512)
T COG5147 81 EQLIDLDKELGTQWST 96 (512)
T ss_pred HHHHHHHHhcCchhhh
Confidence 888888888777 553
No 28
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=88.54 E-value=1 Score=34.75 Aligned_cols=49 Identities=22% Similarity=0.415 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHHHHHhhc---C---CCC--hHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 021209 186 QRMWTLSEVMKLIDGISQF---G---VGK--WTDIKRLLFSSSSHRTPIDLRDKWRNLLR 237 (316)
Q Consensus 186 rr~WT~EEveaLv~GVeKy---G---~G~--W~~Il~~~f~~f~~RT~VDLKDKWRNL~K 237 (316)
|.+||.+|+.+|++-|.++ | .|+ |.++...+ ...+|-.-++|+|+--++
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~---~t~HtwQSwR~Ry~K~L~ 58 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKH---PTRHTWQSWRDRYLKHLR 58 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS----SSS--SHHHHHHHHHHT-
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc---CCCCCHHHHHHHHHHHHh
Confidence 5689999999999999654 3 243 77776655 248999999999976654
No 29
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=86.93 E-value=1.6 Score=46.39 Aligned_cols=55 Identities=29% Similarity=0.553 Sum_probs=44.2
Q ss_pred CCCCCCCHHHHHHHHHHHh-------hc------------------CCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh-
Q 021209 184 KNQRMWTLSEVMKLIDGIS-------QF------------------GVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR- 237 (316)
Q Consensus 184 K~rr~WT~EEveaLv~GVe-------Ky------------------G~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K- 237 (316)
+.+.+||.||++.|++.|+ .| -.-+|+.|-... ..|+.++|+-||-.|+.
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~----~TR~~~qCr~Kw~kl~~~ 509 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEML----GTRSRIQCRYKWYKLTTS 509 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhh----cCCCcchHHHHHHHHHhh
Confidence 4678899999999999996 44 123899998854 69999999999999996
Q ss_pred hhhcc
Q 021209 238 ASYAH 242 (316)
Q Consensus 238 ~s~~~ 242 (316)
.++..
T Consensus 510 ~s~n~ 514 (607)
T KOG0051|consen 510 PSFNK 514 (607)
T ss_pred HHhhc
Confidence 33443
No 30
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=85.66 E-value=1.5 Score=33.83 Aligned_cols=50 Identities=26% Similarity=0.496 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHhhc---C----CC-----ChHHHHHHhcCCC-CCCChhhHHHHHHHHhh
Q 021209 188 MWTLSEVMKLIDGISQF---G----VG-----KWTDIKRLLFSSS-SHRTPIDLRDKWRNLLR 237 (316)
Q Consensus 188 ~WT~EEveaLv~GVeKy---G----~G-----~W~~Il~~~f~~f-~~RT~VDLKDKWRNL~K 237 (316)
.||++++..|++.+... | .| .|..|...+...+ ..-|..+|+.||..|.+
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 49999999999988544 1 22 4888888864433 55678999999999987
No 31
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=84.26 E-value=0.63 Score=47.44 Aligned_cols=52 Identities=27% Similarity=0.416 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhcC-CC-CCCChhhHHHHH----HHHhhhh
Q 021209 187 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFS-SS-SHRTPIDLRDKW----RNLLRAS 239 (316)
Q Consensus 187 r~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~-~f-~~RT~VDLKDKW----RNL~K~s 239 (316)
..||-+|.+.|-+-.++|-. +|--|.+.|-. .| ..||--||||+| |+|+++.
T Consensus 131 n~WskeETD~LF~lck~fDL-Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr 188 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFDL-RFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKAR 188 (445)
T ss_pred ccccHHHHHHHHHHHHhcCe-eEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHcc
Confidence 46999999999999999998 99999998721 24 469999999999 6666654
No 32
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.23 E-value=1 Score=41.23 Aligned_cols=47 Identities=26% Similarity=0.592 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHh-cCCC--CCCC------hhhHHHHH
Q 021209 186 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLL-FSSS--SHRT------PIDLRDKW 232 (316)
Q Consensus 186 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~-f~~f--~~RT------~VDLKDKW 232 (316)
..-|-..-+-.|+.||-.||-|+|.+|.++- |.++ +=++ ..++|.|+
T Consensus 3 ~~iw~r~hdywll~gi~~hgy~rwqdi~nd~~f~IiNEPFk~e~~kgnfle~KNkF 58 (173)
T PF08074_consen 3 YEIWHRRHDYWLLAGIVKHGYGRWQDIQNDPRFAIINEPFKTESQKGNFLEMKNKF 58 (173)
T ss_pred hhhhhhhhhHHHHhHHhhccchhHHHHhcCCceeeecccccccccccchHHHHHHH
Confidence 4457777888899999999999999999984 4442 1122 25888776
No 33
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=81.02 E-value=3.7 Score=33.68 Aligned_cols=54 Identities=22% Similarity=0.368 Sum_probs=37.9
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCCC---hHHHHHHhcCCC-CCCChhhHHHHHHHHhhh
Q 021209 185 NQRMWTLSEVMKLIDGISQF----GVGK---WTDIKRLLFSSS-SHRTPIDLRDKWRNLLRA 238 (316)
Q Consensus 185 ~rr~WT~EEveaLv~GVeKy----G~G~---W~~Il~~~f~~f-~~RT~VDLKDKWRNL~K~ 238 (316)
-.|-||.+++-.|++|+-.| |.+. |..........+ .+=+..||.||-|.|.+.
T Consensus 3 ~qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~K 64 (98)
T PF04504_consen 3 FQRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKK 64 (98)
T ss_pred CcCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 35679999999999999877 7554 444443322222 233778999999999963
No 34
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=75.25 E-value=1.6 Score=49.97 Aligned_cols=55 Identities=20% Similarity=0.200 Sum_probs=40.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCC--------CCChhhHHHHHHHHhhhh
Q 021209 185 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSS--------HRTPIDLRDKWRNLLRAS 239 (316)
Q Consensus 185 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~--------~RT~VDLKDKWRNL~K~s 239 (316)
.---|..+++..|+-||-+||.|+|..|+.+-.--|. .=.+++|.-+=.-|++..
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp~L~l~dKi~~~e~~P~a~~L~~R~~yLls~~ 1194 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIRLDPDLGLTDKIFLVETVPQAKHLQRRADYLLSLL 1194 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhccCccccchhhhcccccCCchHHHHHHHHHHHHHH
Confidence 3456999999999999999999999999987421122 334577777766666543
No 35
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=69.57 E-value=8.5 Score=39.71 Aligned_cols=55 Identities=18% Similarity=0.391 Sum_probs=46.6
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 021209 178 KIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 238 (316)
Q Consensus 178 ~~~~rRK~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~ 238 (316)
+.++ ++..-+||.+|.+.+..++..+|. -++.|...| ++|...++|-||.+--|.
T Consensus 358 t~g~-~~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~lf----P~R~RkqIKaKfi~Eek~ 412 (507)
T COG5118 358 TFGK-KKGALRWSKKEIEKFYKALSIWGT-DFSLISSLF----PNRERKQIKAKFIKEEKV 412 (507)
T ss_pred cccC-CCCCCcccHHHHHHHHHHHHHhcc-hHHHHHHhc----CchhHHHHHHHHHHHhhh
Confidence 3444 566789999999999999999998 899998765 799999999999887764
No 36
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=48.83 E-value=22 Score=38.00 Aligned_cols=45 Identities=22% Similarity=0.409 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 021209 187 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 237 (316)
Q Consensus 187 r~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K 237 (316)
--|+.+|++.|+....-+-. .|..|.... +||+-+|-.++-||+-
T Consensus 60 tews~eederlLhlakl~p~-qwrtIa~i~-----gr~~~qc~eRy~~ll~ 104 (617)
T KOG0050|consen 60 TEWSREEDERLLHLAKLEPT-QWRTIADIM-----GRTSQQCLERYNNLLD 104 (617)
T ss_pred hhhhhhHHHHHHHHHHhcCC-ccchHHHHh-----hhhHHHHHHHHHHHHH
Confidence 36999999999999888876 999999865 8999999999999985
No 37
>smart00595 MADF subfamily of SANT domain.
Probab=39.81 E-value=32 Score=26.23 Aligned_cols=25 Identities=24% Similarity=0.541 Sum_probs=20.7
Q ss_pred ChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 021209 208 KWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 237 (316)
Q Consensus 208 ~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K 237 (316)
-|..|..... -|..+|+-||.||-.
T Consensus 29 aW~~Ia~~l~-----~~~~~~~~kw~~LR~ 53 (89)
T smart00595 29 AWEEIAEELG-----LSVEECKKRWKNLRD 53 (89)
T ss_pred HHHHHHHHHC-----cCHHHHHHHHHHHHH
Confidence 4999988763 299999999999974
No 38
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=39.26 E-value=73 Score=28.01 Aligned_cols=52 Identities=23% Similarity=0.182 Sum_probs=40.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHh
Q 021209 184 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 236 (316)
Q Consensus 184 K~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~ 236 (316)
+..++=|..|++.+..-|++||. .+..+..+-.-+.-..|.-+|+-+.+.+.
T Consensus 112 ~~~~~ls~~e~~~i~~Li~KhGd-Dy~aMarD~KLN~~Q~T~~qlrrki~~~k 163 (164)
T PF09420_consen 112 KKPRRLSEREIEYIEYLIEKHGD-DYKAMARDRKLNYMQHTPGQLRRKIRKYK 163 (164)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-cHHHHhccCCCCcccCCHHHHHHHHHHhc
Confidence 45677899999999999999995 77777766442345789999998877654
No 39
>cd01187 INT_SG4 INT_SG4, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 4, N- and C-terminal domains. The CD contains mainly predicted bacterial integrase/recombinases for which not much biochemical characterization is available.
Probab=36.23 E-value=1.2e+02 Score=27.22 Aligned_cols=82 Identities=16% Similarity=0.153 Sum_probs=47.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCC------ChHHHHHHhcCCCCCCChhhHHHHHHHHhhh-hhcc-cccCCCCCcccccc
Q 021209 185 NQRMWTLSEVMKLIDGISQFGVG------KWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA-SYAH-QKNKGEVDPKHAMR 256 (316)
Q Consensus 185 ~rr~WT~EEveaLv~GVeKyG~G------~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~-s~~~-~~~r~~~e~K~~~~ 256 (316)
..+.||.+|+.+|++++..++.. .|..|...... ..-|.+-=+.=+|..+--. +.+. ...++ .+....
T Consensus 98 ~~~~lt~~e~~~l~~~~~~~~~~~~~~~~~~~~~i~ll~~-tGlR~~E~~~L~~~did~~~~~i~i~~~K~---~~~r~v 173 (299)
T cd01187 98 TPYIYTDEEIQRLLAAALQLPPTSGLRPWTYRTLFGLLAV-TGLRLGEALRLRLSDVDLDSGILTVRDSKF---GKSRLV 173 (299)
T ss_pred CCccCCHHHHHHHHHHHHhCCCCCCchhhHHHHHHHHHHH-hCCcHHHHHhCcHHhcCCCCCeEEEEecCC---CCccEE
Confidence 34569999999999999877643 24455443211 2456665555556554321 1111 11121 123468
Q ss_pred CCCHHHHHHHHHHH
Q 021209 257 SLPKPVLCRIRELA 270 (316)
Q Consensus 257 ~iP~~lL~RVreLa 270 (316)
|||+++.+-+.+..
T Consensus 174 pl~~~l~~~l~~~~ 187 (299)
T cd01187 174 PLHASTRAALRDYL 187 (299)
T ss_pred eCCHHHHHHHHHHH
Confidence 99999888777653
No 40
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=28.87 E-value=40 Score=35.90 Aligned_cols=53 Identities=17% Similarity=0.375 Sum_probs=38.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 021209 185 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 238 (316)
Q Consensus 185 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~ 238 (316)
.---||..|...+-++++|||. ...+|..+|.+--+-+.-|.-.=-|..--+|
T Consensus 284 emEEWSasEanLFEeALeKyGK-DFndIrqdfLPWKSl~sIveyYYmwKttdRY 336 (693)
T KOG3554|consen 284 EMEEWSASEANLFEEALEKYGK-DFNDIRQDFLPWKSLTSIVEYYYMWKTTDRY 336 (693)
T ss_pred hhhhccchhhHHHHHHHHHhcc-cHHHHHHhhcchHHHHHHHHHHHHHhhhhHH
Confidence 3456999999999999999998 8999999885433444455555445444443
No 41
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=28.05 E-value=72 Score=28.53 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=17.0
Q ss_pred cCCCHHHHHHHHHHHhhCCC
Q 021209 256 RSLPKPVLCRIRELATIHPY 275 (316)
Q Consensus 256 ~~iP~~lL~RVreLa~~~py 275 (316)
..+|.++|++|..+|+..=+
T Consensus 87 VtVPA~lLe~vl~~A~~~L~ 106 (139)
T PF07128_consen 87 VTVPADLLERVLRLAEQALW 106 (139)
T ss_pred ccccHHHHHHHHHHHHHHHh
Confidence 35899999999999987655
No 42
>cd02135 Arsenite_oxidase Nitroreductase-like family which includes NADH oxidase and arsenite oxidiase. NADH oxidase catalyses the oxidation of NAD(P)H and accepts a wide broad range of compounds as electron acceptors, such as nitrocompound. Arsenite oxidase in a beta-proteobacterial strain is able to oxidize arsenite to arsenate.
Probab=26.89 E-value=76 Score=26.04 Aligned_cols=35 Identities=17% Similarity=0.007 Sum_probs=28.2
Q ss_pred ccccccCCCHHHHHHHHHHHhhCCCCCCCCCCccC
Q 021209 251 PKHAMRSLPKPVLCRIRELATIHPYPRVPYSKKCN 285 (316)
Q Consensus 251 ~K~~~~~iP~~lL~RVreLa~~~pyp~~~~~~~~~ 285 (316)
|+....+||.+.|.+|.+.|...|-+.|.+.-.|.
T Consensus 11 R~f~~~~v~~e~l~~il~aA~~APs~~n~Qpw~f~ 45 (160)
T cd02135 11 KKLTLPAPDREQLEQILEAAARAPDHGKLEPWRFI 45 (160)
T ss_pred hhcCCCCCCHHHHHHHHHHHHhCCCcCCccCeEEE
Confidence 34445679999999999999999988887776664
No 43
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=23.34 E-value=87 Score=22.93 Aligned_cols=27 Identities=30% Similarity=0.560 Sum_probs=20.1
Q ss_pred ChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 021209 208 KWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 237 (316)
Q Consensus 208 ~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K 237 (316)
-|..|...+.. .-+..+|+.+|.+|-.
T Consensus 28 aw~~Ia~~l~~---~~~~~~~~~~w~~Lr~ 54 (85)
T PF10545_consen 28 AWQEIARELGK---EFSVDDCKKRWKNLRD 54 (85)
T ss_pred HHHHHHHHHcc---chhHHHHHHHHHHHHH
Confidence 48888887632 3457789999999885
No 44
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=20.67 E-value=1.9e+02 Score=30.88 Aligned_cols=47 Identities=19% Similarity=0.419 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 021209 186 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 237 (316)
Q Consensus 186 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K 237 (316)
+..||.||...|-.+.+.||. +...|...+ .+|+--.|-.=|-++.|
T Consensus 187 ~d~WT~Ed~vlFe~aF~~~GK-~F~kIrq~L----P~rsLaSlvqyYy~~KK 233 (534)
T KOG1194|consen 187 PDEWTAEDIVLFEQAFQFFGK-DFHKIRQAL----PHRSLASLVQYYYSWKK 233 (534)
T ss_pred cccchHHHHHHHHHHHHHhcc-cHHHHHHHc----cCccHHHHHHHHHHHHH
Confidence 456999999999999999998 999999875 56666655555555444
Done!