Query 021209
Match_columns 316
No_of_seqs 151 out of 393
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 14:20:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021209.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021209hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2aje_A Telomere repeat-binding 99.9 4.2E-26 1.4E-30 186.8 6.5 95 181-285 8-102 (105)
2 2roh_A RTBP1, telomere binding 99.9 2.4E-24 8.3E-29 180.5 8.8 95 180-284 25-119 (122)
3 2ckx_A NGTRF1, telomere bindin 99.9 3.4E-24 1.2E-28 168.6 6.6 81 187-277 1-81 (83)
4 2juh_A Telomere binding protei 99.9 1.6E-23 5.5E-28 175.4 7.3 95 179-283 10-104 (121)
5 1x58_A Hypothetical protein 49 99.7 2.1E-18 7E-23 130.5 6.8 55 183-239 5-59 (62)
6 3sjm_A Telomeric repeat-bindin 99.7 1.7E-16 5.8E-21 118.7 7.0 54 185-240 10-63 (64)
7 1w0t_A Telomeric repeat bindin 99.5 7.9E-15 2.7E-19 104.5 6.7 51 186-238 2-52 (53)
8 1ity_A TRF1; helix-turn-helix, 99.5 2E-14 6.7E-19 107.4 7.4 59 181-241 5-63 (69)
9 1guu_A C-MYB, MYB proto-oncoge 99.2 1.2E-11 4E-16 87.3 6.1 48 186-237 3-50 (52)
10 2d9a_A B-MYB, MYB-related prot 99.2 2.9E-11 1E-15 87.6 5.8 51 184-238 6-56 (60)
11 1gvd_A MYB proto-oncogene prot 99.2 3.8E-11 1.3E-15 84.8 5.5 48 186-237 3-50 (52)
12 1x41_A Transcriptional adaptor 99.1 9.3E-11 3.2E-15 85.6 6.5 50 185-238 7-56 (60)
13 2elk_A SPCC24B10.08C protein; 99.1 1.4E-10 4.7E-15 84.5 6.5 47 186-236 9-56 (58)
14 2dim_A Cell division cycle 5-l 99.1 1.5E-10 5.1E-15 86.3 5.9 50 185-238 8-57 (70)
15 2yus_A SWI/SNF-related matrix- 98.9 1.4E-09 4.7E-14 84.4 6.1 51 180-235 12-62 (79)
16 2cu7_A KIAA1915 protein; nucle 98.9 2E-09 7E-14 80.9 6.7 50 185-239 8-57 (72)
17 2din_A Cell division cycle 5-l 98.9 3E-09 1E-13 78.5 5.8 50 185-240 8-57 (66)
18 2yum_A ZZZ3 protein, zinc fing 98.8 3.4E-09 1.2E-13 79.8 5.6 50 185-238 7-61 (75)
19 1gv2_A C-MYB, MYB proto-oncoge 98.8 3.8E-09 1.3E-13 83.2 5.6 48 186-237 4-51 (105)
20 2k9n_A MYB24; R2R3 domain, DNA 98.8 7.8E-09 2.7E-13 82.4 6.1 47 187-237 2-48 (107)
21 2llk_A Cyclin-D-binding MYB-li 98.8 5.8E-09 2E-13 80.3 4.5 48 185-238 22-69 (73)
22 1h8a_C AMV V-MYB, MYB transfor 98.7 1.1E-08 3.7E-13 83.5 6.1 49 185-237 26-74 (128)
23 3osg_A MYB21; transcription-DN 98.7 1.4E-08 4.7E-13 83.2 6.3 50 183-237 8-57 (126)
24 3osg_A MYB21; transcription-DN 98.7 2.1E-08 7.2E-13 82.1 6.3 54 186-244 62-115 (126)
25 1gv2_A C-MYB, MYB proto-oncoge 98.7 2E-08 6.8E-13 79.1 5.6 49 185-238 55-103 (105)
26 2k9n_A MYB24; R2R3 domain, DNA 98.7 3.3E-08 1.1E-12 78.7 6.6 49 186-239 53-101 (107)
27 3zqc_A MYB3; transcription-DNA 98.6 1.6E-08 5.3E-13 83.2 4.3 48 186-237 2-49 (131)
28 3zqc_A MYB3; transcription-DNA 98.6 4.5E-08 1.5E-12 80.5 6.4 51 186-241 54-104 (131)
29 2cqr_A RSGI RUH-043, DNAJ homo 98.6 3.8E-08 1.3E-12 75.6 4.9 51 183-237 15-68 (73)
30 1h8a_C AMV V-MYB, MYB transfor 98.5 5.8E-08 2E-12 79.2 4.8 49 185-238 78-126 (128)
31 1h89_C C-MYB, MYB proto-oncoge 98.5 1.2E-07 4E-12 79.8 5.8 49 185-237 57-105 (159)
32 2ltp_A Nuclear receptor corepr 97.8 2.1E-08 7.3E-13 78.7 0.0 49 186-239 16-64 (89)
33 1h89_C C-MYB, MYB proto-oncoge 98.3 3.9E-07 1.3E-11 76.6 4.8 49 185-238 109-157 (159)
34 2cjj_A Radialis; plant develop 98.3 8.3E-07 2.8E-11 71.1 6.1 49 186-238 8-59 (93)
35 2eqr_A N-COR1, N-COR, nuclear 98.0 1.3E-05 4.3E-10 58.8 7.0 52 181-237 7-58 (61)
36 1ign_A Protein (RAP1); RAP1,ye 97.9 7.1E-06 2.4E-10 76.0 4.7 52 185-240 7-63 (246)
37 3hm5_A DNA methyltransferase 1 97.9 2.4E-05 8.4E-10 63.0 6.5 51 187-238 31-82 (93)
38 2cqq_A RSGI RUH-037, DNAJ homo 97.8 3.3E-05 1.1E-09 59.1 6.5 49 185-238 7-58 (72)
39 2ebi_A DNA binding protein GT- 97.4 6.1E-05 2.1E-09 57.8 2.7 55 185-239 3-66 (86)
40 4b4c_A Chromodomain-helicase-D 97.4 0.00022 7.6E-09 61.7 6.2 53 186-238 134-196 (211)
41 1wgx_A KIAA1903 protein; MYB D 97.2 0.00042 1.4E-08 53.6 5.5 49 186-238 8-59 (73)
42 2iw5_B Protein corest, REST co 97.2 0.00043 1.5E-08 63.8 6.1 50 183-237 130-179 (235)
43 4iej_A DNA methyltransferase 1 97.1 0.001 3.6E-08 53.7 6.4 50 187-237 31-81 (93)
44 2crg_A Metastasis associated p 97.0 0.0021 7.1E-08 48.5 7.4 55 183-241 5-59 (70)
45 2yqk_A Arginine-glutamic acid 96.9 0.0027 9.2E-08 46.8 7.1 50 184-237 7-56 (63)
46 2xb0_X Chromo domain-containin 96.6 0.00099 3.4E-08 62.1 3.5 30 187-216 169-198 (270)
47 1fex_A TRF2-interacting telome 96.6 0.0022 7.4E-08 47.2 4.4 49 186-237 2-58 (59)
48 1ofc_X ISWI protein; nuclear p 96.5 0.0018 6.2E-08 61.3 4.5 55 185-239 211-276 (304)
49 2y9y_A Imitation switch protei 95.8 0.0085 2.9E-07 58.4 5.1 54 186-239 228-292 (374)
50 4b4c_A Chromodomain-helicase-D 95.7 0.018 6.1E-07 49.7 6.3 55 183-239 4-60 (211)
51 1irz_A ARR10-B; helix-turn-hel 95.5 0.05 1.7E-06 41.2 7.2 54 182-237 3-61 (64)
52 2xag_B REST corepressor 1; ami 95.2 0.022 7.7E-07 57.0 6.1 49 184-237 378-426 (482)
53 4a69_C Nuclear receptor corepr 94.6 0.047 1.6E-06 43.3 5.2 46 182-232 39-84 (94)
54 4eef_G F-HB80.4, designed hema 93.8 0.016 5.4E-07 45.3 0.8 43 186-232 20-65 (74)
55 2xb0_X Chromo domain-containin 90.2 0.57 1.9E-05 43.6 6.9 53 185-239 2-56 (270)
56 1ug2_A 2610100B20RIK gene prod 87.8 1.9 6.6E-05 35.0 7.5 54 182-239 29-84 (95)
57 1ign_A Protein (RAP1); RAP1,ye 81.1 2.1 7.3E-05 39.7 5.6 29 207-239 172-200 (246)
58 2lr8_A CAsp8-associated protei 80.4 0.39 1.3E-05 37.2 0.0 49 185-238 13-63 (70)
59 1ofc_X ISWI protein; nuclear p 57.5 12 0.00041 35.4 5.0 48 186-237 110-157 (304)
60 3ukx_C Bimax2 peptide; arm rep 55.9 6 0.0002 25.4 1.8 11 154-164 10-20 (28)
61 3ukw_C Bimax1 peptide; arm rep 55.5 6.9 0.00024 25.1 2.1 16 142-161 2-17 (28)
62 2xag_B REST corepressor 1; ami 49.1 3.6 0.00012 41.3 0.0 41 186-231 189-229 (482)
63 3lqv_P Splicing factor 3B subu 22.8 28 0.00094 24.2 0.9 14 185-198 19-32 (39)
No 1
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.92 E-value=4.2e-26 Score=186.79 Aligned_cols=95 Identities=26% Similarity=0.581 Sum_probs=81.2
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhhhcccccCCCCCccccccCCCH
Q 021209 181 DRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSLPK 260 (316)
Q Consensus 181 ~rRK~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s~~~~~~r~~~e~K~~~~~iP~ 260 (316)
..++++++||+||+++|++||++||.|+|+.|+..+|++|.+||.||||||||||++.+.+..+.+++ .+||+
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg-------~~~P~ 80 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRG-------EPVPQ 80 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTC-------CSCCC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccC-------CCCCH
Confidence 46788999999999999999999999999999999988899999999999999999977765443332 35999
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCccC
Q 021209 261 PVLCRIRELATIHPYPRVPYSKKCN 285 (316)
Q Consensus 261 ~lL~RVreLa~~~pyp~~~~~~~~~ 285 (316)
++|+||++ +|+||.+...+...
T Consensus 81 ~~l~rv~~---~~~~~~~~~~~~~~ 102 (105)
T 2aje_A 81 ELLNRVLN---AHGYWTQQQMQQLQ 102 (105)
T ss_dssp HHHHHHHH---HHHHHHHHTTTTSS
T ss_pred HHHHHHHH---HHHHHHHHHHHHHh
Confidence 99999999 67788877776543
No 2
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.90 E-value=2.4e-24 Score=180.54 Aligned_cols=95 Identities=28% Similarity=0.555 Sum_probs=81.8
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhhhcccccCCCCCccccccCCC
Q 021209 180 DDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSLP 259 (316)
Q Consensus 180 ~~rRK~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s~~~~~~r~~~e~K~~~~~iP 259 (316)
...||++++||.||+++|++||++||.|+|+.|+..+|.+|.+||++|||||||||++.+.+..+.++. .++|
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~-------~~~p 97 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRG-------APVP 97 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCC-------SSCC
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCC-------CCCC
Confidence 456888999999999999999999999999999999888899999999999999999977665443332 4589
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCcc
Q 021209 260 KPVLCRIRELATIHPYPRVPYSKKC 284 (316)
Q Consensus 260 ~~lL~RVreLa~~~pyp~~~~~~~~ 284 (316)
++|+++|++ +|.||.|++++.+
T Consensus 98 ~e~~~~v~~---~h~~~g~~~~~~~ 119 (122)
T 2roh_A 98 QELLDRVLA---AQAYWSVDSSGRI 119 (122)
T ss_dssp HHHHHHHHH---HHHHHHSSCSCCC
T ss_pred HHHHHHHHH---HHHHHhhHHhhhh
Confidence 999999998 7777888877754
No 3
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.90 E-value=3.4e-24 Score=168.61 Aligned_cols=81 Identities=30% Similarity=0.666 Sum_probs=69.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhhhcccccCCCCCccccccCCCHHHHHHH
Q 021209 187 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSLPKPVLCRI 266 (316)
Q Consensus 187 r~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s~~~~~~r~~~e~K~~~~~iP~~lL~RV 266 (316)
++||+||+++|++||++||.|+|++|+..+|..|.+||.+|||||||||++.+.++.+.+++ .|||+++++||
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~-------~~~p~~~~~rv 73 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG-------EPVPQDLLDRV 73 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCS-------SCCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccC-------CCCCHHHHHHH
Confidence 58999999999999999999999999999888889999999999999999988775543322 35999999999
Q ss_pred HHHHhhCCCCC
Q 021209 267 RELATIHPYPR 277 (316)
Q Consensus 267 reLa~~~pyp~ 277 (316)
++| |+||.
T Consensus 74 ~~~---~a~~~ 81 (83)
T 2ckx_A 74 LAA---HAYWS 81 (83)
T ss_dssp HHH---HHHHH
T ss_pred HHH---HHHHh
Confidence 995 45553
No 4
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.89 E-value=1.6e-23 Score=175.39 Aligned_cols=95 Identities=27% Similarity=0.581 Sum_probs=82.4
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhhhcccccCCCCCccccccCC
Q 021209 179 IDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSL 258 (316)
Q Consensus 179 ~~~rRK~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s~~~~~~r~~~e~K~~~~~i 258 (316)
....++++++||.||+++|++||++||.|+|+.|+..+|.+|.+||.+|||||||||++.+.++.+.++. +++
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg-------~~~ 82 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG-------EPV 82 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCC-------SCC
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCC-------CCC
Confidence 3457888999999999999999999999999999999988899999999999999999987774443332 459
Q ss_pred CHHHHHHHHHHHhhCCCCCCCCCCc
Q 021209 259 PKPVLCRIRELATIHPYPRVPYSKK 283 (316)
Q Consensus 259 P~~lL~RVreLa~~~pyp~~~~~~~ 283 (316)
|++++++|++ +|.||.|+.++.
T Consensus 83 p~e~~~rv~~---~h~~~gn~~~~~ 104 (121)
T 2juh_A 83 PQDLLDRVLA---AHAYWSQQQGKQ 104 (121)
T ss_dssp CHHHHHHHHH---HHHHHHHHHCCS
T ss_pred CHHHHHHHHH---HHHHHccchhcc
Confidence 9999999998 778888888884
No 5
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=2.1e-18 Score=130.49 Aligned_cols=55 Identities=24% Similarity=0.425 Sum_probs=50.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhh
Q 021209 183 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 239 (316)
Q Consensus 183 RK~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s 239 (316)
.+.+++||.||+++|++||++||. +|++|+..|. .|.+||.||||||||||.|..
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~-f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFP-FQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSC-CCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCC-CccCcccchHHHHHHHHHhcc
Confidence 357889999999999999999999 9999999883 379999999999999999854
No 6
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.65 E-value=1.7e-16 Score=118.66 Aligned_cols=54 Identities=26% Similarity=0.633 Sum_probs=49.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhhh
Q 021209 185 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 240 (316)
Q Consensus 185 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s~ 240 (316)
++.+||+||+++|+++|++||.|+|+.|...++ |.+||++||+|+|+||+|.+.
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~--~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYP--FVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC--CSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHccCCCchHHHHhhcC--CCCCCHHHHHHHHHHHhccCC
Confidence 456899999999999999999999999998864 579999999999999998753
No 7
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.55 E-value=7.9e-15 Score=104.52 Aligned_cols=51 Identities=27% Similarity=0.644 Sum_probs=46.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 021209 186 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 238 (316)
Q Consensus 186 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~ 238 (316)
+.+||+||+++|+++|++||.|+|+.|...+. |.+||++||+++|+|++|+
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~--~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK--FNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC--CSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC--CCCCCHHHHHHHHHHHHcc
Confidence 56899999999999999999999999999763 4589999999999999985
No 8
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.52 E-value=2e-14 Score=107.38 Aligned_cols=59 Identities=25% Similarity=0.598 Sum_probs=51.9
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhhhc
Q 021209 181 DRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 241 (316)
Q Consensus 181 ~rRK~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s~~ 241 (316)
..++++.+||+||+++|+++|++||.|+|+.|...+. |.+||.+||+++|+|+++....
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~--~~~Rt~~qcr~Rw~~~l~p~i~ 63 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK--FNNRTSVMLKDRWRTMKKLKLI 63 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSC--CSSCCHHHHHHHHHHHHHTSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcC--cCCCCHHHHHHHHHHHcCCCCC
Confidence 3566788999999999999999999999999998763 4599999999999999987644
No 9
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.23 E-value=1.2e-11 Score=87.27 Aligned_cols=48 Identities=29% Similarity=0.566 Sum_probs=44.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 021209 186 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 237 (316)
Q Consensus 186 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K 237 (316)
+.+||.||++.|+++|++||.++|+.|...+ .+||..+|+++|.|++.
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYL----PNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTS----TTCCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc----CCCCHHHHHHHHHHHcC
Confidence 5689999999999999999999999998763 69999999999999874
No 10
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.17 E-value=2.9e-11 Score=87.61 Aligned_cols=51 Identities=24% Similarity=0.429 Sum_probs=45.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 021209 184 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 238 (316)
Q Consensus 184 K~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~ 238 (316)
..+.+||+||++.|+++|++||.++|+.|...+ .+||..+|+++|.|+++-
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~l~p 56 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHF----PNRTDQQCQYRWLRVLSG 56 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHC----SSSCHHHHHHHHHHTSCS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc----cCCCHHHHHHHHHHHcCC
Confidence 346689999999999999999999999999874 689999999999998863
No 11
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.15 E-value=3.8e-11 Score=84.79 Aligned_cols=48 Identities=27% Similarity=0.559 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 021209 186 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 237 (316)
Q Consensus 186 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K 237 (316)
+.+||.||++.|+++|++||.++|..|... |.+||..+|+++|.|++.
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~----~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKH----LKGRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTT----STTCCHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHH----cCCCCHHHHHHHHHHHcC
Confidence 568999999999999999999999999875 379999999999999874
No 12
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.12 E-value=9.3e-11 Score=85.58 Aligned_cols=50 Identities=20% Similarity=0.529 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 021209 185 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 238 (316)
Q Consensus 185 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~ 238 (316)
.+.+||+||++.|+++|++||.++|..|...+ .+||..+|+++|.+++.-
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~----~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGFGNWQDVANQM----CTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHH----TTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHh----CCCCHHHHHHHHHHHccC
Confidence 45689999999999999999999999999876 689999999999998753
No 13
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.10 E-value=1.4e-10 Score=84.48 Aligned_cols=47 Identities=30% Similarity=0.601 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCC-CCChhhHHHHHHHHh
Q 021209 186 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSS-HRTPIDLRDKWRNLL 236 (316)
Q Consensus 186 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~-~RT~VDLKDKWRNL~ 236 (316)
+.+||++|++.|+++|++||.++|..|.... . +||..+|+++|.|+.
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~----~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIADYV----GNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHHHHH----CSSCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHH----CCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999999999875 5 899999999999874
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1.5e-10 Score=86.35 Aligned_cols=50 Identities=20% Similarity=0.517 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 021209 185 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 238 (316)
Q Consensus 185 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~ 238 (316)
++.+||.||++.|+++|++||.++|..|...+ .+||..+|+++|.|+++-
T Consensus 8 k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l----~~Rt~~qcr~Rw~~~L~p 57 (70)
T 2dim_A 8 KGGVWRNTEDEILKAAVMKYGKNQWSRIASLL----HRKSAKQCKARWYEWLDP 57 (70)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHS----TTCCHHHHHHHHHHTSCS
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHh----cCCCHHHHHHHHHHHcCC
Confidence 45689999999999999999999999999874 699999999999998864
No 15
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.92 E-value=1.4e-09 Score=84.40 Aligned_cols=51 Identities=18% Similarity=0.388 Sum_probs=45.5
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHH
Q 021209 180 DDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNL 235 (316)
Q Consensus 180 ~~rRK~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL 235 (316)
+..+....+||.||++.|++||++|| ++|..|.... .+||..+|+.+|.++
T Consensus 12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v----~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 12 SKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHV----GSRTQDECILHFLRL 62 (79)
T ss_dssp CCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHH----SSCCHHHHHHHHTTS
T ss_pred ccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHc----CCCCHHHHHHHHHHh
Confidence 44556678999999999999999999 8999999875 589999999999988
No 16
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.92 E-value=2e-09 Score=80.87 Aligned_cols=50 Identities=26% Similarity=0.592 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhh
Q 021209 185 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 239 (316)
Q Consensus 185 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s 239 (316)
.+.+||.||++.|+++|++||. +|+.|...+ .+||..+||++|.++++..
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~----~~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGR-RWTKISKLI----GSRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHH----SSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHc----CCCCHHHHHHHHHHHHHHH
Confidence 4568999999999999999999 999999854 6999999999999999754
No 17
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=3e-09 Score=78.49 Aligned_cols=50 Identities=20% Similarity=0.333 Sum_probs=44.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhhh
Q 021209 185 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 240 (316)
Q Consensus 185 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s~ 240 (316)
.+.+||.||++.|+++|+.||. +|..|.. + .+||..+|+++|.++++-..
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~----~gRt~~qcr~Rw~~~l~~~~ 57 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPT-QWRTIAP-I----IGRTAAQCLEHYEFLLDKAA 57 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-H----HSSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-c----cCcCHHHHHHHHHHHhChHh
Confidence 3568999999999999999998 9999998 4 37999999999999997543
No 18
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=3.4e-09 Score=79.77 Aligned_cols=50 Identities=20% Similarity=0.407 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCC-----CChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 021209 185 NQRMWTLSEVMKLIDGISQFGV-----GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 238 (316)
Q Consensus 185 ~rr~WT~EEveaLv~GVeKyG~-----G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~ 238 (316)
.+.+||.||++.|+++|++||. ++|..|...+ .+||..||+++|.+++..
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~----~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADEL----GNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHH----SSSCHHHHHHHHHHHHGG
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHh----CCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999996 7999999875 689999999999888854
No 19
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.82 E-value=3.8e-09 Score=83.22 Aligned_cols=48 Identities=25% Similarity=0.544 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 021209 186 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 237 (316)
Q Consensus 186 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K 237 (316)
+.+||+||++.|+.+|++||.++|..|... +.+||..+|+++|.|++.
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~----l~~Rt~~qcr~Rw~~~l~ 51 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKH----LKGRIGKQCRERWHNHLN 51 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTTCHHHHHTT----STTCCHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcHHHHhhh----hcCCCHHHHHHHHHhccC
Confidence 468999999999999999999999999874 479999999999999864
No 20
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.78 E-value=7.8e-09 Score=82.36 Aligned_cols=47 Identities=28% Similarity=0.601 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 021209 187 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 237 (316)
Q Consensus 187 r~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K 237 (316)
.+||+||++.|+.+|++||.++|..|.... .+||+.+|+++|.|.+.
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~L~ 48 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLM----ITRNPRQCRERWNNYIN 48 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHT----TTSCHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhc----CCCCHHHHHHHHHHHHc
Confidence 479999999999999999999999998864 69999999999999875
No 21
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.76 E-value=5.8e-09 Score=80.30 Aligned_cols=48 Identities=21% Similarity=0.301 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 021209 185 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 238 (316)
Q Consensus 185 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~ 238 (316)
.+.+||+||++.|++.|++||. +|+.|.+. | +||..+||++|+.|.+.
T Consensus 22 ~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~----l-gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKHGN-DWATIGAA----L-GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHHSS-CHHHHHHH----H-TSCHHHHHHHHHHCSCC
T ss_pred CCCCCCHHHHHHHHHHHHHHCC-CHHHHHHH----h-CCCHHHHHHHHHHHHHH
Confidence 4568999999999999999997 69999886 4 89999999999987653
No 22
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.75 E-value=1.1e-08 Score=83.52 Aligned_cols=49 Identities=31% Similarity=0.687 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 021209 185 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 237 (316)
Q Consensus 185 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K 237 (316)
.+.+||.||++.|+++|++||.++|..|...+ .+||..+|+++|.|++.
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l----~~Rt~~qcr~Rw~~~l~ 74 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHL----KGRIGKQCRERWHNHLN 74 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHS----SSCCHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHh----cCCcHHHHHHHHHHhcc
Confidence 35689999999999999999999999998864 69999999999999874
No 23
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.73 E-value=1.4e-08 Score=83.20 Aligned_cols=50 Identities=26% Similarity=0.456 Sum_probs=44.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 021209 183 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 237 (316)
Q Consensus 183 RK~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K 237 (316)
..++.+||+||++.|+.+|++||. +|..|... +.+||..+|+++|+|.+.
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~----~~~Rt~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAAT----FPNRNARQCRDRWKNYLA 57 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHT----CTTCCHHHHHHHHHHHTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHH----cCCCCHHHHHHHHhhhcc
Confidence 344678999999999999999998 99999875 469999999999999884
No 24
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.69 E-value=2.1e-08 Score=82.08 Aligned_cols=54 Identities=24% Similarity=0.501 Sum_probs=45.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhhhcccc
Q 021209 186 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQK 244 (316)
Q Consensus 186 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s~~~~~ 244 (316)
+.+||.||++.|+++|++||. +|+.|... |.+||..+|+++|.+|++.-.+|..
T Consensus 62 ~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~l~~k~~~p~~ 115 (126)
T 3osg_A 62 HTPWTAEEDALLVQKIQEYGR-QWAIIAKF----FPGRTDIHIKNRWVTISNKLGIPQT 115 (126)
T ss_dssp CSCCCHHHHHHHHHHHHHHCS-CHHHHHTT----STTCCHHHHHHHHHHHHHHTTC---
T ss_pred cccCCHHHHHHHHHHHHHHCc-CHHHHHHH----cCCCCHHHHHHHHHHHHHhcCCCCC
Confidence 458999999999999999995 99999874 4799999999999999986555543
No 25
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.68 E-value=2e-08 Score=79.11 Aligned_cols=49 Identities=22% Similarity=0.552 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 021209 185 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 238 (316)
Q Consensus 185 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~ 238 (316)
.+.+||.||++.|+.+|++||. +|+.|... |.+||..+|+++|.++++.
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAKL----LPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSS-CHHHHHTT----CTTCCHHHHHHHHHHHTC-
T ss_pred cccCCCHHHHHHHHHHHHHhCC-CHHHHHHH----cCCCCHHHHHHHHHHHHhc
Confidence 3568999999999999999996 99999864 4799999999999999864
No 26
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.67 E-value=3.3e-08 Score=78.69 Aligned_cols=49 Identities=27% Similarity=0.621 Sum_probs=44.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhh
Q 021209 186 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 239 (316)
Q Consensus 186 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s 239 (316)
+.+||.||++.|+.+|.+||. +|+.|...+ .+||..+|+++|.+|++..
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l----~gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGP-KWNKISKFL----KNRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCS-CHHHHHHHH----SSSCHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCc-CHHHHHHHC----CCCCHHHHHHHHHHHHhhH
Confidence 569999999999999999997 999999854 6999999999999999753
No 27
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.65 E-value=1.6e-08 Score=83.21 Aligned_cols=48 Identities=23% Similarity=0.423 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 021209 186 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 237 (316)
Q Consensus 186 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K 237 (316)
+.+||.||++.|+.+|++||.++|..|... +.+||..+|+++|.|.+.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~----~~~Rt~~qcr~Rw~~~l~ 49 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSF----LPNRSPKQCRERWFNHLD 49 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTS----CTTSCHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHH----HCCCCHHHHHHHHhhccC
Confidence 357999999999999999999999999764 479999999999999885
No 28
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.62 E-value=4.5e-08 Score=80.46 Aligned_cols=51 Identities=22% Similarity=0.511 Sum_probs=45.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhhhc
Q 021209 186 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 241 (316)
Q Consensus 186 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s~~ 241 (316)
+.+||.||++.|+++|.+||. +|+.|... |.+||..+|+++|.++++....
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~~l~~~~~ 104 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKLGS-KWSVIAKL----IPGRTDNAIKNRWNSSISKRIS 104 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHSCS-CHHHHTTT----STTCCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCHHHHHHHHHHHHHHCc-CHHHHHHH----cCCCCHHHHHHHHHHHHHHHhh
Confidence 458999999999999999995 99999863 4799999999999999976544
No 29
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.60 E-value=3.8e-08 Score=75.63 Aligned_cols=51 Identities=20% Similarity=0.369 Sum_probs=45.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCC---CChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 021209 183 RKNQRMWTLSEVMKLIDGISQFGV---GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 237 (316)
Q Consensus 183 RK~rr~WT~EEveaLv~GVeKyG~---G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K 237 (316)
.-...+||.+|+.+|+.+|++||. .+|..|.... .+||..+|+.+|.+|+.
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~v----pGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV----PSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC----SSSCHHHHHHHHHHHHS
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc----CCCCHHHHHHHHHHHHH
Confidence 445678999999999999999994 5899998764 69999999999999986
No 30
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.54 E-value=5.8e-08 Score=79.22 Aligned_cols=49 Identities=22% Similarity=0.546 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 021209 185 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 238 (316)
Q Consensus 185 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~ 238 (316)
.+.+||.||++.|+++|++||. +|+.|... |.+||..+|+++|.++++.
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~----l~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAKL----LPGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHGGG----STTCCHHHHHHHHHTTTTC
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHHHH----CCCCCHHHHHHHHHHHHhc
Confidence 3568999999999999999996 99999864 4799999999999999864
No 31
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.50 E-value=1.2e-07 Score=79.82 Aligned_cols=49 Identities=24% Similarity=0.514 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 021209 185 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 237 (316)
Q Consensus 185 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K 237 (316)
.+.+||.||++.|+.+|++||.++|..|... |.+||..+|+++|.|++.
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~----l~~Rt~~qcr~Rw~~~l~ 105 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKH----LKGRIGKQCRERWHNHLN 105 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHHT----STTCCHHHHHHHHHHTTC
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHHH----cCCCCHHHHHHHHHHHhC
Confidence 3568999999999999999999899999874 479999999999999874
No 32
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=97.83 E-value=2.1e-08 Score=78.67 Aligned_cols=49 Identities=20% Similarity=0.382 Sum_probs=44.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhh
Q 021209 186 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 239 (316)
Q Consensus 186 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s 239 (316)
+.+||.||++.|+++|++||. +|..|... |.+||..+|+.+|.++++..
T Consensus 16 ~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~----l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 16 FQGWTEEEMGTAKKGLLEHGR-NWSAIARM----VGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 458999999999999999998 89999875 47999999999999999754
No 33
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.33 E-value=3.9e-07 Score=76.65 Aligned_cols=49 Identities=22% Similarity=0.552 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 021209 185 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 238 (316)
Q Consensus 185 ~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~ 238 (316)
.+.+||.||++.|+++|++||. +|+.|... |.+||..+||.+|..|++.
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~-~W~~Ia~~----l~gRt~~~~knr~~~~~r~ 157 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAKL----LPGRTDNAIKNHWNSTMRR 157 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHHTT----STTCCHHHHHHHHHTTTCC
T ss_pred cccCCChHHHHHHHHHHHHHCC-CHHHHHHH----CCCCCHHHHHHHHHHHHhc
Confidence 3568999999999999999996 99999874 4799999999999999864
No 34
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.31 E-value=8.3e-07 Score=71.06 Aligned_cols=49 Identities=18% Similarity=0.514 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHhhcC---CCChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 021209 186 QRMWTLSEVMKLIDGISQFG---VGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 238 (316)
Q Consensus 186 rr~WT~EEveaLv~GVeKyG---~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~ 238 (316)
..+||.||+..|+.+|.+|| ..+|..|.... .+||..+|+.+|.+|+.-
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~v----pGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAV----EGRTPEEVKKHYEILVED 59 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHS----TTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc----CCCCHHHHHHHHHHHHHH
Confidence 45899999999999999998 45799999875 699999999999999853
No 35
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=1.3e-05 Score=58.80 Aligned_cols=52 Identities=15% Similarity=0.073 Sum_probs=44.9
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 021209 181 DRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 237 (316)
Q Consensus 181 ~rRK~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K 237 (316)
+.|+...+||++|.+.+++|+.+||. +|..|... +.+||..||...|-...|
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~----l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASY----LERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHH----CTTSCHHHHHHHHHHHTC
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHH----cCCCCHHHHHHHHHHhcC
Confidence 45677889999999999999999996 99999854 479999999999876554
No 36
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.91 E-value=7.1e-06 Score=75.99 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=45.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCC-----hHHHHHHhcCCCCCCChhhHHHHHHHHhhhhh
Q 021209 185 NQRMWTLSEVMKLIDGISQFGVGK-----WTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 240 (316)
Q Consensus 185 ~rr~WT~EEveaLv~GVeKyG~G~-----W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s~ 240 (316)
.+.+||.||++.|++.|++||..+ |+.|... +.+||.-+||++|+++++...
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~----LpGRT~nsIRnRw~~~L~~~l 63 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHY----VPNHTGNSIRHRFRVYLSKRL 63 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTT----STTSCHHHHHHHHHHTTGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHH----cCCCCHHHHHHHHHHHHhhhc
Confidence 345899999999999999998753 9999874 589999999999999998654
No 37
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.87 E-value=2.4e-05 Score=63.00 Aligned_cols=51 Identities=20% Similarity=0.336 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhc-CCCCCCChhhHHHHHHHHhhh
Q 021209 187 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLF-SSSSHRTPIDLRDKWRNLLRA 238 (316)
Q Consensus 187 r~WT~EEveaLv~GVeKyG~G~W~~Il~~~f-~~f~~RT~VDLKDKWRNL~K~ 238 (316)
.+||.||++.|.+-+++||. +|..|.+.|- ..+..||..|||++|-.+++.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~ 82 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAK 82 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999997 9999999873 234689999999999988874
No 38
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.84 E-value=3.3e-05 Score=59.06 Aligned_cols=49 Identities=24% Similarity=0.466 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCC---CChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 021209 185 NQRMWTLSEVMKLIDGISQFGV---GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 238 (316)
Q Consensus 185 ~rr~WT~EEveaLv~GVeKyG~---G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~ 238 (316)
....||.||...|..+|.+|+. .+|..|.... +||..|++.+|..|...
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-----gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-----GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-----TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-----CCCHHHHHHHHHHHHHh
Confidence 3558999999999999999995 5799999874 69999999999999875
No 39
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.43 E-value=6.1e-05 Score=57.78 Aligned_cols=55 Identities=27% Similarity=0.413 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcC----C-----CChHHHHHHhcCCCCCCChhhHHHHHHHHhhhh
Q 021209 185 NQRMWTLSEVMKLIDGISQFG----V-----GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 239 (316)
Q Consensus 185 ~rr~WT~EEveaLv~GVeKyG----~-----G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s 239 (316)
....||.+|+.+|+.....+- . ..|..|.......=-.||+.+|++||.||.+.-
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 356799999999999987532 1 269999887421102799999999999999853
No 40
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.40 E-value=0.00022 Score=61.69 Aligned_cols=53 Identities=21% Similarity=0.341 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhc---------CC-CCCCChhhHHHHHHHHhhh
Q 021209 186 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLF---------SS-SSHRTPIDLRDKWRNLLRA 238 (316)
Q Consensus 186 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f---------~~-f~~RT~VDLKDKWRNL~K~ 238 (316)
...||.+|+..|+.||.+||.|+|..|+++-. +. ...++++.|..+--.|++.
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 45699999999999999999999999999741 11 2456788888887777764
No 41
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.24 E-value=0.00042 Score=53.59 Aligned_cols=49 Identities=20% Similarity=0.449 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCC---CChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 021209 186 QRMWTLSEVMKLIDGISQFGV---GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 238 (316)
Q Consensus 186 rr~WT~EEveaLv~GVeKyG~---G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~ 238 (316)
...||.+|+.+|..++..|+. ++|..|.... .+||..+|+.+|.-|++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V----~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAV----GSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHT----TTSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHc----CCCCHHHHHHHHHHHHhc
Confidence 357999999999999999986 6899999864 689999999999998654
No 42
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.20 E-value=0.00043 Score=63.84 Aligned_cols=50 Identities=18% Similarity=0.464 Sum_probs=44.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 021209 183 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 237 (316)
Q Consensus 183 RK~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K 237 (316)
.+...+||.+|.+.+++|+.+||. +|..|.+.. ..||..++|.-|.+..|
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~V----gTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVI----GNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHH----SSCCHHHHHHHHHHTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHc----CCCCHHHHHHHHHHHHH
Confidence 456779999999999999999997 899998874 68999999999987775
No 43
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.07 E-value=0.001 Score=53.71 Aligned_cols=50 Identities=20% Similarity=0.345 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhc-CCCCCCChhhHHHHHHHHhh
Q 021209 187 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLF-SSSSHRTPIDLRDKWRNLLR 237 (316)
Q Consensus 187 r~WT~EEveaLv~GVeKyG~G~W~~Il~~~f-~~f~~RT~VDLKDKWRNL~K 237 (316)
..||.||+..|.+-+++|+. +|-.|.+.|. ..+..||--|||++|-.+++
T Consensus 31 ~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 36999999999999999997 9999999873 33568999999999977765
No 44
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.03 E-value=0.0021 Score=48.50 Aligned_cols=55 Identities=11% Similarity=0.257 Sum_probs=46.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhhhc
Q 021209 183 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 241 (316)
Q Consensus 183 RK~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s~~ 241 (316)
|.....||++|...+.+|+.+||. +|..|...+ +..||..||-.-+-...|...+
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~---v~~Kt~~~~v~fYY~wKkt~~y 59 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGK-DFNDIRQDF---LPWKSLTSIIEYYYMWKTTDRY 59 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTT---CSSSCHHHHHHHHHHHHTCCSS
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHH---cCCCCHHHHHHHHHhhcCCchH
Confidence 567789999999999999999999 899998744 4799999999888866654444
No 45
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.93 E-value=0.0027 Score=46.85 Aligned_cols=50 Identities=20% Similarity=0.413 Sum_probs=41.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 021209 184 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 237 (316)
Q Consensus 184 K~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K 237 (316)
-....||+||...+.+|+.+||. +|..|...+ +..||..||..-+-...|
T Consensus 7 ~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~---v~~Kt~~~~v~fYY~wKk 56 (63)
T 2yqk_A 7 GIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKEL---LPNKETGELITFYYYWKK 56 (63)
T ss_dssp CCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHS---CTTSCHHHHHHHHHHHHC
T ss_pred cCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHH---cCCCcHHHHHHHHhcccC
Confidence 34568999999999999999999 899998754 479999999876654443
No 46
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=96.65 E-value=0.00099 Score=62.08 Aligned_cols=30 Identities=37% Similarity=0.675 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHh
Q 021209 187 RMWTLSEVMKLIDGISQFGVGKWTDIKRLL 216 (316)
Q Consensus 187 r~WT~EEveaLv~GVeKyG~G~W~~Il~~~ 216 (316)
-.|+.+|+..|+.||.+||.|+|..|+.+-
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~Dp 198 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDDP 198 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHCT
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcCc
Confidence 359999999999999999999999999985
No 47
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=96.61 E-value=0.0022 Score=47.19 Aligned_cols=49 Identities=16% Similarity=0.336 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHhhc--------CCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 021209 186 QRMWTLSEVMKLIDGISQF--------GVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 237 (316)
Q Consensus 186 rr~WT~EEveaLv~GVeKy--------G~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K 237 (316)
+.+||+||+.+|++-|.+| |.--|++|... .+..+|-..++|+|+.-++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~---~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKS---SLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHS---CSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHh---HCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 44469888772 2479999999999998654
No 48
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.53 E-value=0.0018 Score=61.35 Aligned_cols=55 Identities=16% Similarity=0.303 Sum_probs=47.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCC---CChHHHHHHh-------cCC-CCCCChhhHHHHHHHHhhhh
Q 021209 185 NQRMWTLSEVMKLIDGISQFGV---GKWTDIKRLL-------FSS-SSHRTPIDLRDKWRNLLRAS 239 (316)
Q Consensus 185 ~rr~WT~EEveaLv~GVeKyG~---G~W~~Il~~~-------f~~-f~~RT~VDLKDKWRNL~K~s 239 (316)
+.+.||.+|+..|+-++.+||. |+|..|+.+. |+. |..||+++|..+-..|+++-
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~i 276 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLI 276 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 4568999999999999999999 9999998552 343 48999999999999999853
No 49
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.79 E-value=0.0085 Score=58.37 Aligned_cols=54 Identities=17% Similarity=0.303 Sum_probs=47.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCC---CChHHHHHHh-------cCC-CCCCChhhHHHHHHHHhhhh
Q 021209 186 QRMWTLSEVMKLIDGISQFGV---GKWTDIKRLL-------FSS-SSHRTPIDLRDKWRNLLRAS 239 (316)
Q Consensus 186 rr~WT~EEveaLv~GVeKyG~---G~W~~Il~~~-------f~~-f~~RT~VDLKDKWRNL~K~s 239 (316)
.+.||.+|+..|+-+|.+||. |+|..|+.+. |+. |..||+++|..+-..|+++-
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~I 292 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCL 292 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 457999999999999999999 9999998872 343 48999999999999999864
No 50
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.69 E-value=0.018 Score=49.71 Aligned_cols=55 Identities=20% Similarity=0.279 Sum_probs=44.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcC--CCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhh
Q 021209 183 RKNQRMWTLSEVMKLIDGISQFG--VGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 239 (316)
Q Consensus 183 RK~rr~WT~EEveaLv~GVeKyG--~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s 239 (316)
+.....||..|...|+.|+.+|| .++|..|..+.. |.++|..++++=...++..+
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~--L~~Ks~~~v~~y~~~f~~~c 60 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAE--LVDKSETDLRRLGELVHNGC 60 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTT--CTTSCHHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHH
Confidence 44567899999999999999999 689999999753 68999999998777766543
No 51
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=95.47 E-value=0.05 Score=41.15 Aligned_cols=54 Identities=22% Similarity=0.348 Sum_probs=43.2
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCC--ChHHHHHHhcCCCCCCChhhHH---HHHHHHhh
Q 021209 182 RRKNQRMWTLSEVMKLIDGISQFGVG--KWTDIKRLLFSSSSHRTPIDLR---DKWRNLLR 237 (316)
Q Consensus 182 rRK~rr~WT~EEveaLv~GVeKyG~G--~W~~Il~~~f~~f~~RT~VDLK---DKWRNL~K 237 (316)
.++++-.||+|.-+.++++|+++|.. .|+.|++... ..+.|..+++ .|||..++
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~--v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMN--VDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcC--CCCCCHHHHHHHHHHHHHHHH
Confidence 36678899999999999999999953 3889998764 3688988888 56666553
No 52
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=95.25 E-value=0.022 Score=57.00 Aligned_cols=49 Identities=18% Similarity=0.464 Sum_probs=42.3
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 021209 184 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 237 (316)
Q Consensus 184 K~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K 237 (316)
+..-+||.+|.+.+++||.+||. +|..|.... ..||..+++.-|.+..+
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~V----gTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVI----GNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHH----SSCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHh----CCCCHHHHHHHHHHHHH
Confidence 45678999999999999999998 999999875 58999999988765443
No 53
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=94.61 E-value=0.047 Score=43.26 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=38.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHH
Q 021209 182 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKW 232 (316)
Q Consensus 182 rRK~rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKW 232 (316)
.|.....||++|.+.+.+|+..||. +|..|.. + +..||..||-.=+
T Consensus 39 ~r~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~-~---l~~Kt~~~cV~~Y 84 (94)
T 4a69_C 39 DRQVMNMWSEQEKETFREKFMQHPK-NFGLIAS-F---LERKTVAECVLYY 84 (94)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHSTT-CHHHHHH-T---CTTCCHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHHcCC-CHHHHHH-H---cCCCCHHHHHHHH
Confidence 3456788999999999999999998 8999954 3 5899999987544
No 54
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=93.77 E-value=0.016 Score=45.27 Aligned_cols=43 Identities=21% Similarity=0.505 Sum_probs=36.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCC---ChHHHHHHhcCCCCCCChhhHHHHH
Q 021209 186 QRMWTLSEVMKLIDGISQFGVG---KWTDIKRLLFSSSSHRTPIDLRDKW 232 (316)
Q Consensus 186 rr~WT~EEveaLv~GVeKyG~G---~W~~Il~~~f~~f~~RT~VDLKDKW 232 (316)
-..||.+|..+|..++.+|+.+ +|..|.... .+||..+++..+
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~V----pGKT~eEVk~hY 65 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYV----KGRTPEEVKKHY 65 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGS----CSSCHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHc----CCCCHHHHHHHH
Confidence 4579999999999999999976 899998754 689999988654
No 55
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=90.23 E-value=0.57 Score=43.61 Aligned_cols=53 Identities=15% Similarity=0.121 Sum_probs=45.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcC--CCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhh
Q 021209 185 NQRMWTLSEVMKLIDGISQFG--VGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 239 (316)
Q Consensus 185 ~rr~WT~EEveaLv~GVeKyG--~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s 239 (316)
+++.||..|+..|+.++.+|| .++|..|..+. .|..+...+|+.=+..|+..+
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA--~L~~ks~~~i~~~~~~li~~c 56 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGNLKEILDELIADG--TLPVKSFEKYGETYDEMMEAA 56 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTT--SSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhc--ccccCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999 48999999875 378999999998887777544
No 56
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=87.82 E-value=1.9 Score=35.01 Aligned_cols=54 Identities=17% Similarity=0.389 Sum_probs=46.4
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCC--CChHHHHHHhcCCCCCCChhhHHHHHHHHhhhh
Q 021209 182 RRKNQRMWTLSEVMKLIDGISQFGV--GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 239 (316)
Q Consensus 182 rRK~rr~WT~EEveaLv~GVeKyG~--G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s 239 (316)
.-..-..||.||+..++...++-|. -.|+.|...+ .+|+.-+++++++.|++.-
T Consensus 29 ~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L----~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQL----GNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHH----SSCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHH----ccCCHHHHHHHHHHHHHHH
Confidence 3445678999999999999999986 4799998875 6899999999999999853
No 57
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=81.08 E-value=2.1 Score=39.74 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=24.4
Q ss_pred CChHHHHHHhcCCCCCCChhhHHHHHHHHhhhh
Q 021209 207 GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 239 (316)
Q Consensus 207 G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~s 239 (316)
+.|..|...+ .+||.+..+|+|+.+++..
T Consensus 172 ~~fk~ia~~~----P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 172 EFFKHFAEEH----AAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp THHHHHHHHT----TTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHC----CCCChhhHHHHHHHHHhhc
Confidence 3699998764 7999999999999998744
No 58
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=80.38 E-value=0.39 Score=37.15 Aligned_cols=49 Identities=10% Similarity=0.266 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCC--CChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 021209 185 NQRMWTLSEVMKLIDGISQFGV--GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 238 (316)
Q Consensus 185 ~rr~WT~EEveaLv~GVeKyG~--G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K~ 238 (316)
.-..||.||+..++...++-|. -.|+.|... + +|++-+++++++.|++.
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~----L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAK----L-DKNPNQVSERFQQLMKL 63 (70)
Confidence 3457999999999999999986 367777654 4 89999999999999874
No 59
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=57.48 E-value=12 Score=35.41 Aligned_cols=48 Identities=15% Similarity=0.284 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 021209 186 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 237 (316)
Q Consensus 186 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDKWRNL~K 237 (316)
--.||..+-.+++.|+.+||...|..|.... .+.|..+++.=...+..
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev----~~Kt~eEV~~Y~~vFw~ 157 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDV----EGKTPEEVIEYNAVFWE 157 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSS----TTCCHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHh----cCCCHHHHHHHHHHHHH
Confidence 4469999999999999999999999998765 57999999877766664
No 60
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=55.87 E-value=6 Score=25.43 Aligned_cols=11 Identities=36% Similarity=0.002 Sum_probs=8.0
Q ss_pred ccccCCCCCCC
Q 021209 154 LGFESDDDIFS 164 (316)
Q Consensus 154 ~~~E~dd~~d~ 164 (316)
++-||||++|+
T Consensus 10 rkrewdddddp 20 (28)
T 3ukx_C 10 RKREWDDDDDP 20 (28)
T ss_dssp CCCCCCCSSSC
T ss_pred hhcccccCCCc
Confidence 46899997553
No 61
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=55.53 E-value=6.9 Score=25.13 Aligned_cols=16 Identities=38% Similarity=0.407 Sum_probs=8.9
Q ss_pred cccCCCCCCCCcccccCCCC
Q 021209 142 LRGGRLKKRSPILGFESDDD 161 (316)
Q Consensus 142 ~R~~r~~kn~s~~~~E~dd~ 161 (316)
.|+.||++ +.+|||.+
T Consensus 2 srrrrprk----rplewded 17 (28)
T 3ukw_C 2 SRRRRPRK----RPLEWDED 17 (28)
T ss_dssp -----CCC----CCCCCCGG
T ss_pred cccccccc----CCcccccc
Confidence 35566776 78999875
No 62
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=49.14 E-value=3.6 Score=41.33 Aligned_cols=41 Identities=15% Similarity=0.285 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHH
Q 021209 186 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDK 231 (316)
Q Consensus 186 rr~WT~EEveaLv~GVeKyG~G~W~~Il~~~f~~f~~RT~VDLKDK 231 (316)
...||.+|...+.+|+..||. +|..|... +.+||.-+|=.-
T Consensus 189 ~d~WT~eE~~lFe~al~~yGK-dF~~I~~~----lp~Ksv~e~V~y 229 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGK-TFHRIQQM----LPDKSIASLVKF 229 (482)
T ss_dssp ----------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCc-cHHHHHHH----cCCCCHHHHHHH
Confidence 347999999999999999998 89999853 467887777544
No 63
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=22.75 E-value=28 Score=24.21 Aligned_cols=14 Identities=14% Similarity=0.147 Sum_probs=11.8
Q ss_pred CCCCCCHHHHHHHH
Q 021209 185 NQRMWTLSEVMKLI 198 (316)
Q Consensus 185 ~rr~WT~EEveaLv 198 (316)
+.++||.||.++++
T Consensus 19 RNrpltDEeLD~mL 32 (39)
T 3lqv_P 19 RNRPLSDEELDAMF 32 (39)
T ss_dssp TTCCCCHHHHHHTC
T ss_pred hcCCCCHHHHHHhC
Confidence 46799999999875
Done!