BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021210
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 171 bits (434), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 134/211 (63%)
Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
+QW+PGH+AK +E+ ++LKL+D+V E+ DARIP+S+ +P+++ L N+ RI++LN+ D
Sbjct: 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADK 62
Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
A W +F QG + + N G G ++ +K + + + R+KG+ PRA+R
Sbjct: 63 ADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIR 122
Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279
A I+G PNVGKS+LINRL K+ + RPG+T +WV+ GK+LE LD+PGI+ + D
Sbjct: 123 ALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFED 182
Query: 280 QAAAIKLAICDDIGERSYDVADVAAILVQML 310
+ ++LA+ I + ++ DVA ++ L
Sbjct: 183 ELVGLRLAVTGAIKDSIINLQDVAVFGLRFL 213
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 103/193 (53%), Gaps = 19/193 (9%)
Query: 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDM 159
+ WYPGHI K ++++KD L+L++ V+EVRDAR P +T+ +D ++ I++LN+ D+
Sbjct: 1 MSWYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD--FSRKETIILLNKVDI 58
Query: 160 ISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219
W +F KQG +VI ++ K V +K+ S R R
Sbjct: 59 ADEKTTKKWVEFFKKQGKRVITTH--------------KGEPRKVLLKKLS---FDRLAR 101
Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279
IVG PN GKS++IN+L +R +PG+T+ ++W ++ LD+PGI+ I
Sbjct: 102 VLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVKILDTPGILYKNIFS 161
Query: 280 QAAAIKLAICDDI 292
+ A KL + +
Sbjct: 162 EDLAAKLLLVGSL 174
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 26/35 (74%)
Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK 256
IVG PNVGKSSL NRLLK+R A PGVTR LK
Sbjct: 6 IVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLK 40
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 50/107 (46%), Gaps = 18/107 (16%)
Query: 212 GLLPRAVRAG-----IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-----VLKWVRFG 261
GL+PR G IVG PNVGKS++ NR+ R+ PGVTR +W+ +
Sbjct: 13 GLVPRGSHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNY- 71
Query: 262 KDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQ 308
D +D+ GI I D+ LA E + D ADV +V
Sbjct: 72 -DFNLIDTGGI---DIGDEPF---LAQIRQQAEIAMDEADVIIFMVN 111
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
++G PNVGKSSL+N +L + G TR
Sbjct: 200 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTR 231
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV----LKWVRFGKDLEFLDSPGIIPM 275
IVG PNVGKS+L+N LL ++ +P+ G TR+ +K + + FLD+PGI
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 71
Query: 276 RISDQAAAIKLAICDDIGERSYDVADVAAILV 307
+ SD + +I ++S + ADV ++
Sbjct: 72 KKSDVLGHSMV----EIAKQSLEEADVILFMI 99
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Query: 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV----LKWVRFGKDLEFLDSPGIIPM 275
IVG PNVGKS+L+N LL ++ +P+ G TR+ +K + + FLD+PGI
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 72
Query: 276 RISDQAAAIKLAICDDIGERSYDVADVAAILV 307
+ SD + +I ++S + ADV ++
Sbjct: 73 KKSDVLGHSMV----EIAKQSLEEADVILFMI 100
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 7/57 (12%)
Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-----VLKWVRFGKDLEFLDSPGI 272
IVG PNVGKS+L+N LL ++ P +PRP TR +L R + + F+D+PG+
Sbjct: 11 AIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGL 65
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 28/149 (18%)
Query: 139 PLMDQWLGNRKRILVLNREDMISMADRN----AWATYFAKQ-GTK---VIFSNGQLGMGT 190
P + +++GN K +LV N+ D+I + ++ W Y AKQ G K V + G G
Sbjct: 88 PGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWXRYSAKQLGLKPEDVFLISAAKGQGI 147
Query: 191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK------RRMCP 244
+L A + R K + +VG NVGKS+ INR +K +
Sbjct: 148 AEL-------ADAIEYYRGGKDVY-------VVGCTNVGKSTFINRXIKEFSDETENVIT 193
Query: 245 AAPRPGVTRVLKWVRFGKDLEFLDSPGII 273
+ PG T L + ++ D+PGII
Sbjct: 194 TSHFPGTTLDLIDIPLDEESSLYDTPGII 222
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 192 KLSRLAKALASDVNVKRRSKG-LLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG 250
+L R+ + L ++ K+ G LL R +R IVG PNVGKS+L+NRLL PG
Sbjct: 219 RLERIKEKLTEEL--KKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPG 276
Query: 251 VTR 253
TR
Sbjct: 277 TTR 279
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRP 249
MK+++ ++ + S V ++ +G LP + G NVGKSS IN L+ R+ + + +P
Sbjct: 1 MKVTK-SEIVISAVKPEQYPEGGLPEI---ALAGRSNVGKSSFINSLINRKNLARTSSKP 56
Query: 250 GVTRVLKWVRFGKDLEFLDSPG 271
G T+ L + +L F+D PG
Sbjct: 57 GKTQTLNFYIINDELHFVDVPG 78
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 210 SKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
SK + A++ IVG PNVGKS+L N +L + +P PG TR
Sbjct: 173 SKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTR 216
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-----VLKWVRFGKDLEFLDSPGII 273
IVG PNVGKS+L N+L+K++ GVTR ++W +GK + +D+ G+
Sbjct: 6 IVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEW--YGKTFKLVDTCGVF 60
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%)
Query: 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP 274
P VG NVGKSSL+N L R++ + PG TR + + F+D PG
Sbjct: 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGY 80
Query: 275 MRISDQAAAIKLAICDD 291
++S + + + +D
Sbjct: 81 AKVSKKERMLWKRLVED 97
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-----VLKWVRFGKDLEFLDSPGI 272
IVG PNVGKS++ NR+ R+ PGVTR +W+ + D +D+ GI
Sbjct: 8 IVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNY--DFNLIDTGGI 61
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
++G PNVGKSSL+N L + G TR
Sbjct: 180 LIGRPNVGKSSLVNAXLGEERVIVSNVAGTTR 211
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 209 RSKG-LLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL---KWVRFGKDL 264
+ KG LL ++ IVG PNVGKSSL+N + PG TR + + V G +
Sbjct: 215 KDKGELLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPV 274
Query: 265 EFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILV 307
+ LD+ GI SDQ I + ERS A+ A +++
Sbjct: 275 QVLDTAGI--RETSDQVEKIGV-------ERSRQAANTADLVL 308
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT--RVLKWVRFGKDLEFLDSPGIIPM 275
++G PN GK+SL N L+ PGVT R V+ KDLE D PGI M
Sbjct: 7 ALIGNPNSGKTSLFN-LITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSM 62
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT--RVLKWVRFGKDLEFLDSPGIIPM 275
++G PN GK+SL N L+ PGVT R V+ KDLE D PGI M
Sbjct: 7 ALIGNPNSGKTSLFN-LITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSM 62
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT--RVLKWVRFGKDLEFLDSPGIIPM 275
++G PN GK+SL N L+ PGVT R V+ KDLE D PGI M
Sbjct: 7 ALIGNPNSGKTSLFN-LITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSM 62
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAA-PRPGVTRVLKWVRFGKDLEFLDSPGIIPM 275
++G PN GK+SL N + P V R V+ KDLE D PGI M
Sbjct: 7 ALIGNPNSGKTSLFNLITGHNQRVGNWPGVAVERKSGLVKKNKDLEIQDLPGIYSM 62
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAA-PRPGVTRVLKWVRFGKDLEFLDSPGIIPM 275
++G PN GK+SL N + P V R V+ KDLE D PGI M
Sbjct: 7 ALIGNPNSGKTSLFNLITGHNQRVGNWPGVSVERKSGLVKKNKDLEIQDLPGIYSM 62
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
IVG PNVGKS+L+N+LL +++ + + TR
Sbjct: 13 IVGRPNVGKSTLLNKLLGQKISITSRKAQTTR 44
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 199 ALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR--RMCP-----AAPRPGV 251
A A + KRR + L G+VGYPN GKSSL+ + + ++ P +P GV
Sbjct: 139 AEAGEEGEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGV 198
Query: 252 TRVLKWVRFGKDLEFLDSPGII 273
V + RF D PGII
Sbjct: 199 VEVSEEERF----TLADIPGII 216
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
IVG PNVGKS+L+N+LL +++ + + TR
Sbjct: 10 IVGRPNVGKSTLLNKLLGQKISITSRKAQTTR 41
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 213 LLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253
++ V I G PN GKS+L+N LL + + PG TR
Sbjct: 229 IVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTR 269
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 217 AVRAGIVGYPNVGKSSLINRLLKRRM-------CPAAPRPGV 251
+ GIVG PNVGKS+L N L K + C P GV
Sbjct: 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGV 43
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 12/60 (20%)
Query: 221 GIVGYPNVGKSSLINRLL-------KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 273
G VG+P+VGKS+L+++L + PGV R G ++ LD PGII
Sbjct: 76 GFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYK-----GAKIQMLDLPGII 130
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
Length = 272
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT--RVLKWVRFGKDLEFLDSPGIIPM 275
++G P GK+SL N L+ PGVT R V+ KDLE D PGI M
Sbjct: 7 ALIGNPASGKTSLFN-LITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSM 62
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274
V+ + G PNVGK+SL N L + A PGVT K F G + +D PG
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYS 64
Query: 275 MRIS 278
+ S
Sbjct: 65 LGYS 68
>pdb|1OO3|A Chain A, P395s Mutant Of The P85 Regulatory Subunit Of The N-
Terminal Src Homology 2 Domain Of Pi3-Kinase
pdb|1OO4|A Chain A, P395s Mutant Of The P85 Regulatory Subunit Of The N-
Terminal Src Homology 2 Domain Of Pi3-Kinase Complexed
To A Peptide Derived From Pdgfr
Length = 111
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 96 SLRPVQWYPGHIAKTE--KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILV 153
SL+ +WY G I++ E ++L+D D VRDA + + L + GN K I +
Sbjct: 7 SLQDAEWYWGDISREEVNEKLRDT---ADGTFLVRDASTKMHGDYTLTLRKGGNNKSIKI 63
Query: 154 LNREDMISMAD 164
+R+ +D
Sbjct: 64 FHRDGKYGFSD 74
>pdb|1FU5|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of
Pi3- Kinase Complexed To A Doubly Phosphorylated Peptide
Derived From Polyomavirus Middle T Antigen
pdb|1FU6|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of
Pi3- Kinase
Length = 111
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 96 SLRPVQWYPGHIAKTE--KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILV 153
SL+ +WY G I++ E ++L+D D VRDA + + L + GN K I +
Sbjct: 7 SLQDAEWYWGDISREEVNEKLRDT---ADGTFLVRDASTKMHGDYTLTLRKGGNNKSIKI 63
Query: 154 LNREDMISMAD 164
+R+ +D
Sbjct: 64 FHRDGKYGFSD 74
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 213 LLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-VLKWVRF--GKDLEFLDS 269
LL ++ I G PN GKSSL+N L R G TR VL+ G L +D+
Sbjct: 3 LLREGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDT 62
Query: 270 PGI 272
G+
Sbjct: 63 AGL 65
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274
V+ + G PNVGK+SL N L + A PGVT K F G + +D PG
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYS 64
Query: 275 MRIS 278
+ S
Sbjct: 65 LGYS 68
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274
V+ + G PNVGK+SL N L + A PGVT K F G + +D PG
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYS 64
Query: 275 MRIS 278
+ S
Sbjct: 65 LGYS 68
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR----VLKWVRFGKDLEFLDS 269
+PR+ I+G+ + GK++L+++L K ++ A G+T+ L + G+ + FLD+
Sbjct: 1 IPRSPVVTIMGHVDHGKTTLLDKLRKTQVA-AMEAGGITQHIGAFLVSLPSGEKITFLDT 59
Query: 270 PG 271
PG
Sbjct: 60 PG 61
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGI 272
++ ++G PNVGKS++ N L + PGVT K F G+ + +D PG+
Sbjct: 2 KSYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 60
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGI 272
++ ++G PNVGKS++ N L + PGVT K F G+ + +D PG+
Sbjct: 3 KSYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 61
Query: 273 IPM 275
+
Sbjct: 62 YSL 64
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGI 272
++ ++G PNVGKS++ N L + PGVT K F G+ + +D PG+
Sbjct: 6 KSYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 64
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGI 272
++ ++G PNVGKS++ N L + PGVT K F G+ + +D PG+
Sbjct: 2 KSYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 60
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 221 GIVGYPNVGKSSLINRLLK 239
GIVG PNVGKS+L N L +
Sbjct: 5 GIVGLPNVGKSTLFNALTR 23
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 222 IVGYPNVGKSSLINRLL-----KRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 273
+VG NVGKS+ INR++ K + + PG T + + D+PGII
Sbjct: 167 VVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGII 223
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 221 GIVGYPNVGKSSLINRLLK 239
GIVG PNVGKS+L N L +
Sbjct: 5 GIVGLPNVGKSTLFNALTR 23
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKD---LEFLDSPGIIPMRIS 278
I G+PNVGKS+L+ L + A P TR + +F + +D+PG++ IS
Sbjct: 172 IAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPIS 230
Query: 279 DQAAAIKLAIC 289
++ K AI
Sbjct: 231 ERNEIEKQAIL 241
>pdb|2QM7|A Chain A, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
pdb|2QM7|B Chain B, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
Length = 337
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 216 RAVRAGIVGYPNVGKSSLINRL 237
RA+R GI G P VGKS+ I+ L
Sbjct: 54 RAIRVGITGVPGVGKSTTIDAL 75
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 16/107 (14%)
Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-VLKWVRF--GKDLEFLDSPGIIPMRIS 278
I G PN GKSSL+N L R G TR VL+ G L +D+ G+ S
Sbjct: 9 IAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGXPLHIIDTAGL--REAS 66
Query: 279 DQAAAIKLA-----------ICDDIGERSYDVADVAAILVQMLARIP 314
D+ I + + + + D D A I + +AR+P
Sbjct: 67 DEVERIGIERAWQEIEQADRVLFXVDGTTTDAVDPAEIWPEFIARLP 113
>pdb|2QM8|A Chain A, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide Free
Form
pdb|2QM8|B Chain B, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide Free
Form
Length = 337
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 216 RAVRAGIVGYPNVGKSSLINRL 237
RA+R GI G P VGKS+ I+ L
Sbjct: 54 RAIRVGITGVPGVGKSTTIDAL 75
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 212 GLLPRAVRAGIVGYPNVGKSSLINRL 237
G +++ GIVG PNVGKS+ N L
Sbjct: 17 GRFGTSLKIGIVGLPNVGKSTFFNVL 42
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-VLKWVRF--GKDLEFLDSPGI 272
I G PN GKSSL+N L R G TR VL+ G L +D+ G+
Sbjct: 9 IAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGL 62
>pdb|1NI3|A Chain A, Structure Of The Schizosaccharomyces Pombe Ychf Gtpase
Length = 392
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 252
++ GIVG PNVGKS+ + K + A P T
Sbjct: 21 LKTGIVGXPNVGKSTFFRAITKSVLGNPANYPYAT 55
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 19/70 (27%)
Query: 184 GQLGMGTM-----------KLSRLAKALAS-----DVNVKRRSKGLLPRAVRAGIVGYPN 227
G LG GT ++++L K L S + +++ + +P GIVGY N
Sbjct: 133 GPLGAGTYGVESTIKFYKRRINKLMKELESIKIFKEKSIESNKRNNIPSI---GIVGYTN 189
Query: 228 VGKSSLINRL 237
GK+SL N L
Sbjct: 190 SGKTSLFNSL 199
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 19/70 (27%)
Query: 184 GQLGMGTM-----------KLSRLAKALAS-----DVNVKRRSKGLLPRAVRAGIVGYPN 227
G LG GT ++++L K L S + +++ + +P GIVGY N
Sbjct: 133 GPLGAGTYGVESTIKFYKRRINKLMKELESIKIFKEKSIESNKRNNIPSI---GIVGYTN 189
Query: 228 VGKSSLINRL 237
GK+SL N L
Sbjct: 190 SGKTSLFNSL 199
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 19/70 (27%)
Query: 184 GQLGMGTM-----------KLSRLAKALAS-----DVNVKRRSKGLLPRAVRAGIVGYPN 227
G LG GT ++++L K L S + +++ + +P GIVGY N
Sbjct: 133 GPLGAGTYGVESTIKFYKRRINKLMKELESIKIFKEKSIESNKRNNIPSI---GIVGYTN 189
Query: 228 VGKSSLINRL 237
GK+SL N L
Sbjct: 190 SGKTSLFNSL 199
>pdb|1U0L|A Chain A, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|B Chain B, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|C Chain C, Crystal Structure Of Yjeq From Thermotoga Maritima
Length = 301
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 37/175 (21%)
Query: 121 MDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD----RNAWATY 171
+D VI V ++P ++T+ ++D++L + ++V+N+ D+ D R Y
Sbjct: 85 VDQVILVVTVKMPETSTY-IIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIY 143
Query: 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKS 231
++ ++ + GMG +L K S + AG+ G VGKS
Sbjct: 144 SGLY--PIVKTSAKTGMGIEELKEYLKGKISTM---------------AGLSG---VGKS 183
Query: 232 SLINRL---LKRRMCPAAPR----PGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279
SL+N + LK R+ + + T + ++F +D+PG + I+D
Sbjct: 184 SLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEIND 238
>pdb|3TRI|A Chain A, Structure Of A Pyrroline-5-Carboxylate Reductase (Proc)
From Coxiella Burnetii
pdb|3TRI|B Chain B, Structure Of A Pyrroline-5-Carboxylate Reductase (Proc)
From Coxiella Burnetii
Length = 280
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRIL 152
P I +ELKD L +++ + + T PL+++WLG RI+
Sbjct: 73 PHQIKXVCEELKDILSETKILV----ISLAVGVTTPLIEKWLGKASRIV 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,087,428
Number of Sequences: 62578
Number of extensions: 298086
Number of successful extensions: 831
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 790
Number of HSP's gapped (non-prelim): 57
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)