Query 021210
Match_columns 316
No_of_seqs 370 out of 2428
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 08:28:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021210.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021210hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03596 GTPase_YlqF ribosome 100.0 1.1E-41 2.5E-46 316.8 24.3 214 100-313 1-214 (276)
2 PRK09563 rbgA GTPase YlqF; Rev 100.0 1.5E-41 3.2E-46 317.8 24.2 215 99-313 3-217 (287)
3 COG1161 Predicted GTPases [Gen 100.0 5.9E-38 1.3E-42 297.6 19.8 213 98-310 12-226 (322)
4 KOG2485 Conserved ATP/GTP bind 100.0 4E-36 8.7E-41 276.2 18.8 221 91-314 17-248 (335)
5 cd01856 YlqF YlqF. Proteins o 100.0 1.5E-32 3.2E-37 238.0 19.3 171 102-273 1-171 (171)
6 KOG2484 GTPase [General functi 100.0 6.3E-33 1.4E-37 261.6 14.4 287 21-310 26-344 (435)
7 cd01858 NGP_1 NGP-1. Autoanti 100.0 3.5E-30 7.5E-35 219.9 16.4 151 114-272 2-157 (157)
8 KOG1424 Predicted GTP-binding 100.0 1E-29 2.2E-34 246.1 12.5 214 66-279 113-376 (562)
9 COG1160 Predicted GTPases [Gen 100.0 1.9E-29 4.1E-34 243.1 9.7 221 79-308 32-269 (444)
10 cd01849 YlqF_related_GTPase Yl 100.0 1.4E-27 3E-32 203.5 16.8 151 122-272 1-155 (155)
11 cd01857 HSR1_MMR1 HSR1/MMR1. 100.0 1.4E-27 3.1E-32 200.4 16.2 136 111-275 2-141 (141)
12 cd04178 Nucleostemin_like Nucl 100.0 2.9E-27 6.4E-32 205.6 16.1 143 122-272 1-172 (172)
13 KOG2423 Nucleolar GTPase [Gene 99.9 9.3E-27 2E-31 219.3 13.3 167 102-276 195-366 (572)
14 cd01859 MJ1464 MJ1464. This f 99.9 2E-25 4.4E-30 189.8 17.5 151 112-272 3-156 (156)
15 cd01855 YqeH YqeH. YqeH is an 99.9 1E-25 2.2E-30 198.0 14.8 150 110-272 24-190 (190)
16 PRK13796 GTPase YqeH; Provisio 99.9 4.9E-26 1.1E-30 219.7 11.7 188 111-312 59-264 (365)
17 TIGR03597 GTPase_YqeH ribosome 99.9 4.1E-25 8.8E-30 212.9 11.5 154 108-275 51-217 (360)
18 PRK12289 GTPase RsgA; Reviewed 99.9 1.8E-24 3.9E-29 207.2 14.9 142 117-277 86-239 (352)
19 COG2895 CysN GTPases - Sulfate 99.9 2.2E-24 4.7E-29 201.3 7.8 128 63-191 51-192 (431)
20 TIGR00157 ribosome small subun 99.9 2E-23 4.3E-28 191.2 12.9 143 117-279 33-188 (245)
21 PRK12288 GTPase RsgA; Reviewed 99.9 4.8E-22 1E-26 190.4 14.9 145 115-279 115-274 (347)
22 TIGR03594 GTPase_EngA ribosome 99.9 2.4E-21 5.2E-26 190.3 18.6 170 100-275 51-233 (429)
23 PRK00098 GTPase RsgA; Reviewed 99.9 1E-21 2.2E-26 184.8 12.8 143 116-277 76-231 (298)
24 PRK00093 GTP-binding protein D 99.9 6.8E-21 1.5E-25 187.5 18.2 169 100-275 53-234 (435)
25 cd01854 YjeQ_engC YjeQ/EngC. 99.9 2.9E-21 6.3E-26 180.8 13.2 143 115-276 73-227 (287)
26 PRK03003 GTP-binding protein D 99.9 7.1E-21 1.5E-25 189.6 16.6 169 100-274 90-271 (472)
27 PRK09518 bifunctional cytidyla 99.8 5.2E-20 1.1E-24 191.7 17.6 171 100-274 327-510 (712)
28 COG1162 Predicted GTPases [Gen 99.8 9.2E-20 2E-24 169.2 14.1 141 118-277 77-231 (301)
29 PRK01889 GTPase RsgA; Reviewed 99.7 1.7E-17 3.6E-22 159.8 11.3 145 117-281 109-266 (356)
30 PF03193 DUF258: Protein of un 99.6 3.2E-16 7E-21 134.3 7.9 96 166-279 2-104 (161)
31 PF02421 FeoB_N: Ferrous iron 99.5 3.7E-14 8.1E-19 121.2 6.7 66 218-284 1-69 (156)
32 COG0486 ThdF Predicted GTPase 99.5 6.7E-14 1.5E-18 136.1 8.6 62 214-275 214-278 (454)
33 COG1084 Predicted GTPase [Gene 99.4 4E-13 8.6E-18 125.5 8.6 71 214-285 165-238 (346)
34 COG1159 Era GTPase [General fu 99.4 2E-13 4.4E-18 126.2 6.4 59 219-277 8-69 (298)
35 COG1160 Predicted GTPases [Gen 99.4 6.1E-14 1.3E-18 136.0 0.9 58 219-276 5-65 (444)
36 KOG1191 Mitochondrial GTPase [ 99.4 1.2E-12 2.6E-17 127.5 7.1 60 215-274 266-328 (531)
37 PF01926 MMR_HSR1: 50S ribosom 99.3 1.4E-12 3.1E-17 105.1 5.8 59 219-277 1-62 (116)
38 PF00009 GTP_EFTU: Elongation 99.3 1.4E-11 3.1E-16 107.8 12.6 129 72-201 42-186 (188)
39 COG5256 TEF1 Translation elong 99.3 7.9E-12 1.7E-16 119.9 8.7 125 67-192 54-201 (428)
40 COG0218 Predicted GTPase [Gene 99.3 5E-12 1.1E-16 111.2 6.2 59 218-276 25-84 (200)
41 COG2262 HflX GTPases [General 99.2 3.1E-12 6.7E-17 122.7 3.0 191 70-285 49-263 (411)
42 PLN00043 elongation factor 1-a 99.2 4.5E-11 9.8E-16 118.5 10.6 125 66-191 53-202 (447)
43 PRK05124 cysN sulfate adenylyl 99.2 1.4E-10 3E-15 115.9 12.6 128 66-194 75-217 (474)
44 TIGR02034 CysN sulfate adenyly 99.2 1.7E-10 3.6E-15 113.3 12.3 125 67-192 49-187 (406)
45 cd01852 AIG1 AIG1 (avrRpt2-ind 99.2 5E-11 1.1E-15 105.2 7.0 59 219-277 2-64 (196)
46 cd04166 CysN_ATPS CysN_ATPS su 99.2 2.3E-10 5E-15 102.0 11.1 130 62-192 41-184 (208)
47 TIGR00436 era GTP-binding prot 99.2 5.4E-11 1.2E-15 110.4 7.2 57 219-275 2-61 (270)
48 TIGR03156 GTP_HflX GTP-binding 99.2 9.9E-11 2.1E-15 112.7 9.1 184 70-274 46-249 (351)
49 PTZ00141 elongation factor 1- 99.2 1.6E-10 3.4E-15 114.7 10.4 127 65-192 52-203 (446)
50 cd01884 EF_Tu EF-Tu subfamily. 99.2 4.9E-10 1.1E-14 99.3 12.5 119 72-191 39-172 (195)
51 PRK05506 bifunctional sulfate 99.1 5E-10 1.1E-14 115.7 13.2 127 65-192 71-211 (632)
52 cd01853 Toc34_like Toc34-like 99.1 1.3E-10 2.7E-15 106.9 7.8 63 214-276 28-93 (249)
53 COG2262 HflX GTPases [General 99.1 5.5E-10 1.2E-14 107.3 10.4 149 47-202 190-356 (411)
54 KOG1423 Ras-like GTPase ERA [C 99.1 1.3E-10 2.8E-15 107.7 5.9 61 216-276 71-134 (379)
55 PRK12317 elongation factor 1-a 99.1 4.2E-10 9.2E-15 110.9 9.6 125 67-192 53-195 (425)
56 PRK05291 trmE tRNA modificatio 99.1 3.5E-10 7.6E-15 112.3 8.8 59 216-274 214-275 (449)
57 TIGR00483 EF-1_alpha translati 99.1 6.4E-10 1.4E-14 109.7 10.5 126 66-192 53-197 (426)
58 cd01889 SelB_euk SelB subfamil 99.1 2.2E-09 4.8E-14 94.1 12.8 127 73-200 29-184 (192)
59 PRK12298 obgE GTPase CgtA; Rev 99.1 2.2E-10 4.7E-15 111.8 6.8 57 219-276 161-221 (390)
60 PRK10512 selenocysteinyl-tRNA- 99.1 9.7E-10 2.1E-14 113.0 11.5 128 74-202 26-166 (614)
61 cd01883 EF1_alpha Eukaryotic e 99.1 8.7E-10 1.9E-14 99.2 9.8 124 67-191 46-194 (219)
62 cd04165 GTPBP1_like GTPBP1-lik 99.1 1.2E-09 2.5E-14 99.0 10.6 102 99-201 87-222 (224)
63 cd04171 SelB SelB subfamily. 99.0 2E-09 4.3E-14 90.5 11.2 99 100-199 55-163 (164)
64 TIGR00450 mnmE_trmE_thdF tRNA 99.0 3.8E-10 8.2E-15 111.8 7.7 61 215-275 201-264 (442)
65 PTZ00327 eukaryotic translatio 99.0 1.7E-09 3.7E-14 107.5 11.8 99 100-199 121-230 (460)
66 TIGR00475 selB selenocysteine- 99.0 1.5E-09 3.2E-14 111.1 11.1 128 77-205 29-169 (581)
67 PRK11058 GTPase HflX; Provisio 99.0 6.4E-10 1.4E-14 109.7 8.2 56 218-274 198-257 (426)
68 PTZ00258 GTP-binding protein; 99.0 3.2E-10 7E-15 110.1 5.9 58 217-275 21-98 (390)
69 PRK09601 GTP-binding protein Y 99.0 3.1E-10 6.7E-15 109.2 5.7 57 218-275 3-79 (364)
70 TIGR00991 3a0901s02IAP34 GTP-b 99.0 7.5E-10 1.6E-14 104.2 7.6 60 216-275 37-99 (313)
71 cd01900 YchF YchF subfamily. 99.0 4.4E-10 9.5E-15 104.6 5.9 55 220-275 1-75 (274)
72 PRK00454 engB GTP-binding prot 99.0 5.8E-10 1.3E-14 97.3 6.4 58 217-274 24-82 (196)
73 TIGR03598 GTPase_YsxC ribosome 99.0 1.2E-09 2.7E-14 94.7 8.3 59 217-275 18-77 (179)
74 COG1163 DRG Predicted GTPase [ 99.0 9.4E-10 2E-14 102.9 7.6 61 216-277 62-125 (365)
75 cd01888 eIF2_gamma eIF2-gamma 99.0 4.1E-09 8.8E-14 93.7 11.0 100 100-200 87-197 (203)
76 PRK12736 elongation factor Tu; 99.0 4.8E-09 1E-13 102.6 12.5 128 72-200 49-199 (394)
77 TIGR03680 eif2g_arch translati 99.0 4E-09 8.7E-14 103.5 11.6 100 100-200 84-194 (406)
78 PRK15494 era GTPase Era; Provi 99.0 1.3E-09 2.7E-14 104.6 7.6 59 217-275 52-113 (339)
79 PRK15467 ethanolamine utilizat 99.0 6.9E-09 1.5E-13 88.6 11.4 103 100-203 41-148 (158)
80 CHL00071 tufA elongation facto 99.0 5.9E-09 1.3E-13 102.4 12.3 117 72-189 49-180 (409)
81 PRK00089 era GTPase Era; Revie 99.0 1.2E-09 2.5E-14 102.3 6.6 58 219-276 7-67 (292)
82 TIGR00485 EF-Tu translation el 99.0 1.2E-08 2.5E-13 99.8 14.0 116 72-188 49-179 (394)
83 cd01890 LepA LepA subfamily. 98.9 9.3E-09 2E-13 88.3 11.8 122 77-199 41-174 (179)
84 cd00881 GTP_translation_factor 98.9 1.5E-08 3.2E-13 87.2 12.9 129 71-200 35-185 (189)
85 KOG1249 Predicted GTPases [Gen 98.9 9E-10 1.9E-14 108.5 5.6 122 101-238 94-234 (572)
86 PLN03127 Elongation factor Tu; 98.9 8.1E-09 1.8E-13 102.5 12.4 128 72-200 98-250 (447)
87 PRK04213 GTP-binding protein; 98.9 1.4E-09 3E-14 95.7 5.8 55 217-273 9-63 (201)
88 COG0370 FeoB Fe2+ transport sy 98.9 2E-09 4.2E-14 109.2 7.4 64 218-282 4-70 (653)
89 PF10662 PduV-EutP: Ethanolami 98.9 1.1E-08 2.4E-13 86.1 10.5 98 100-198 40-142 (143)
90 COG1159 Era GTPase [General fu 98.9 2.2E-08 4.8E-13 92.9 12.4 96 110-205 75-175 (298)
91 PRK12299 obgE GTPase CgtA; Rev 98.9 2E-09 4.4E-14 103.0 5.7 57 218-275 159-219 (335)
92 TIGR00436 era GTP-binding prot 98.9 3.8E-08 8.3E-13 91.3 14.1 92 111-203 70-165 (270)
93 TIGR02528 EutP ethanolamine ut 98.9 2.3E-08 5.1E-13 82.7 11.0 97 100-197 39-140 (142)
94 PRK12296 obgE GTPase CgtA; Rev 98.9 2E-09 4.4E-14 107.5 5.3 58 217-275 159-219 (500)
95 cd01898 Obg Obg subfamily. Th 98.9 2E-09 4.3E-14 91.4 4.6 55 219-274 2-60 (170)
96 cd04164 trmE TrmE (MnmE, ThdF, 98.9 3.6E-09 7.9E-14 88.0 6.1 58 218-275 2-62 (157)
97 PLN03126 Elongation factor Tu; 98.9 2.4E-08 5.1E-13 99.9 12.8 116 72-188 118-248 (478)
98 cd01894 EngA1 EngA1 subfamily. 98.9 2E-08 4.3E-13 83.6 10.4 97 100-199 49-155 (157)
99 TIGR00993 3a0901s04IAP86 chlor 98.9 6.5E-09 1.4E-13 105.7 8.8 64 214-277 115-181 (763)
100 PF04548 AIG1: AIG1 family; I 98.9 3.1E-09 6.7E-14 95.3 5.6 63 218-280 1-67 (212)
101 PRK12735 elongation factor Tu; 98.9 2.2E-08 4.8E-13 98.0 11.9 128 72-200 49-201 (396)
102 PRK04000 translation initiatio 98.8 1.6E-08 3.5E-13 99.5 10.9 100 100-200 89-199 (411)
103 PRK00049 elongation factor Tu; 98.8 2.5E-08 5.4E-13 97.6 12.0 128 72-200 49-201 (396)
104 PRK12297 obgE GTPase CgtA; Rev 98.8 3.3E-09 7.2E-14 104.4 5.8 55 219-274 160-218 (424)
105 PRK03003 GTP-binding protein D 98.8 4.3E-09 9.4E-14 105.2 6.6 57 217-273 38-97 (472)
106 KOG1490 GTP-binding protein CR 98.8 2E-09 4.3E-14 105.4 4.0 72 215-287 166-240 (620)
107 cd01878 HflX HflX subfamily. 98.8 1.2E-08 2.6E-13 90.0 8.3 58 217-275 41-102 (204)
108 cd01895 EngA2 EngA2 subfamily. 98.8 4.9E-09 1.1E-13 88.4 5.4 59 217-275 2-63 (174)
109 KOG0458 Elongation factor 1 al 98.8 6.7E-09 1.5E-13 103.3 6.9 124 69-193 226-373 (603)
110 COG3276 SelB Selenocysteine-sp 98.8 5.2E-08 1.1E-12 94.5 12.2 128 74-202 26-162 (447)
111 cd01897 NOG NOG1 is a nucleola 98.8 6.8E-09 1.5E-13 88.1 5.5 55 219-274 2-59 (168)
112 cd01891 TypA_BipA TypA (tyrosi 98.8 6.4E-08 1.4E-12 84.9 11.9 118 77-195 44-175 (194)
113 cd01894 EngA1 EngA1 subfamily. 98.8 4.8E-09 1E-13 87.4 4.4 55 221-275 1-58 (157)
114 cd01879 FeoB Ferrous iron tran 98.8 8.7E-09 1.9E-13 86.1 5.5 54 222-276 1-57 (158)
115 PRK09602 translation-associate 98.8 7.7E-09 1.7E-13 101.1 5.7 57 218-275 2-85 (396)
116 cd04163 Era Era subfamily. Er 98.8 1.3E-08 2.8E-13 84.9 6.3 59 217-275 3-64 (168)
117 TIGR02729 Obg_CgtA Obg family 98.8 7.5E-09 1.6E-13 98.9 5.4 57 218-275 158-218 (329)
118 TIGR03156 GTP_HflX GTP-binding 98.8 7.6E-08 1.6E-12 92.8 12.3 95 101-199 249-349 (351)
119 PRK09554 feoB ferrous iron tra 98.7 1.4E-08 3.1E-13 106.7 6.6 57 218-275 4-63 (772)
120 PRK09518 bifunctional cytidyla 98.7 1.3E-08 2.7E-13 106.7 6.1 57 218-274 276-335 (712)
121 PRK05433 GTP-binding protein L 98.7 1.2E-07 2.5E-12 97.5 13.1 129 71-201 42-183 (600)
122 TIGR01393 lepA GTP-binding pro 98.7 9.9E-08 2.1E-12 98.0 12.5 127 71-201 38-179 (595)
123 cd01876 YihA_EngB The YihA (En 98.7 1.6E-08 3.4E-13 84.6 5.4 55 220-274 2-57 (170)
124 cd01881 Obg_like The Obg-like 98.7 9.1E-09 2E-13 87.6 3.7 51 222-273 1-55 (176)
125 COG0050 TufB GTPases - transla 98.7 1.8E-07 3.9E-12 86.7 12.3 88 77-165 54-146 (394)
126 KOG0460 Mitochondrial translat 98.7 1.2E-07 2.7E-12 89.2 11.1 155 78-233 97-300 (449)
127 PRK15494 era GTPase Era; Provi 98.7 1.9E-07 4.1E-12 89.6 12.8 105 100-205 104-219 (339)
128 PRK00089 era GTPase Era; Revie 98.7 1.9E-07 4.1E-12 87.4 12.4 92 111-202 75-171 (292)
129 TIGR03594 GTPase_EngA ribosome 98.7 1.9E-07 4.1E-12 91.8 12.8 123 80-202 202-344 (429)
130 cd01896 DRG The developmentall 98.7 2.4E-08 5.3E-13 90.8 5.6 56 219-275 2-60 (233)
131 cd04160 Arfrp1 Arfrp1 subfamil 98.7 1.1E-07 2.4E-12 80.5 9.2 97 100-197 54-164 (167)
132 PRK09866 hypothetical protein; 98.7 1.4E-07 3E-12 96.0 11.2 100 100-199 234-350 (741)
133 cd01887 IF2_eIF5B IF2/eIF5B (i 98.7 2.2E-07 4.9E-12 78.4 10.7 102 100-202 54-166 (168)
134 TIGR01394 TypA_BipA GTP-bindin 98.7 1.6E-07 3.6E-12 96.2 11.5 128 72-200 38-189 (594)
135 cd04164 trmE TrmE (MnmE, ThdF, 98.7 1.6E-07 3.6E-12 77.9 9.5 84 112-200 72-155 (157)
136 cd01895 EngA2 EngA2 subfamily. 98.6 5.8E-07 1.3E-11 75.6 12.9 86 114-199 78-172 (174)
137 COG0012 Predicted GTPase, prob 98.6 2.3E-08 5E-13 95.5 4.6 58 217-275 2-80 (372)
138 TIGR02729 Obg_CgtA Obg family 98.6 1.1E-07 2.3E-12 91.0 9.2 101 100-200 209-327 (329)
139 cd01898 Obg Obg subfamily. Th 98.6 1.1E-07 2.3E-12 80.7 8.0 88 112-199 70-168 (170)
140 cd01899 Ygr210 Ygr210 subfamil 98.6 2.7E-08 6E-13 94.6 4.8 55 220-275 1-82 (318)
141 PRK12296 obgE GTPase CgtA; Rev 98.6 3.9E-07 8.5E-12 91.3 12.7 122 82-203 190-341 (500)
142 PRK00093 GTP-binding protein D 98.6 3.9E-07 8.5E-12 89.9 12.6 122 81-202 204-344 (435)
143 cd04171 SelB SelB subfamily. 98.6 5.4E-08 1.2E-12 81.7 5.5 55 219-273 2-62 (164)
144 cd04157 Arl6 Arl6 subfamily. 98.6 2.4E-07 5.3E-12 77.8 9.5 97 100-197 49-159 (162)
145 cd01879 FeoB Ferrous iron tran 98.6 2.8E-07 6.1E-12 76.9 9.7 80 119-200 73-155 (158)
146 TIGR00231 small_GTP small GTP- 98.6 8.8E-08 1.9E-12 78.6 6.4 55 218-273 2-61 (161)
147 cd04163 Era Era subfamily. Er 98.6 5.9E-07 1.3E-11 74.7 11.3 88 112-199 74-166 (168)
148 cd01851 GBP Guanylate-binding 98.6 9.6E-08 2.1E-12 86.5 6.9 60 219-278 9-76 (224)
149 COG3596 Predicted GTPase [Gene 98.6 2.6E-08 5.7E-13 91.5 3.2 63 216-279 38-104 (296)
150 PRK12299 obgE GTPase CgtA; Rev 98.6 2.2E-07 4.9E-12 89.0 9.8 103 100-202 210-328 (335)
151 cd04124 RabL2 RabL2 subfamily. 98.6 3.1E-07 6.8E-12 77.9 9.6 98 100-199 53-155 (161)
152 KOG0462 Elongation factor-type 98.6 1.2E-07 2.5E-12 94.1 7.6 132 67-199 91-232 (650)
153 cd04154 Arl2 Arl2 subfamily. 98.6 1.9E-07 4.2E-12 80.1 8.0 97 100-197 62-170 (173)
154 KOG1491 Predicted GTP-binding 98.6 4.1E-08 9E-13 92.4 4.0 59 216-275 19-97 (391)
155 KOG1489 Predicted GTP-binding 98.5 4.8E-08 1E-12 91.3 3.6 58 218-276 197-258 (366)
156 COG0486 ThdF Predicted GTPase 98.5 3.3E-07 7.1E-12 89.8 9.4 90 110-202 286-376 (454)
157 cd04151 Arl1 Arl1 subfamily. 98.5 3E-07 6.6E-12 77.5 7.9 98 100-198 47-156 (158)
158 cd04156 ARLTS1 ARLTS1 subfamil 98.5 2.9E-07 6.3E-12 77.3 7.8 98 100-198 48-158 (160)
159 cd04166 CysN_ATPS CysN_ATPS su 98.5 5E-08 1.1E-12 87.0 3.0 55 219-273 1-88 (208)
160 COG0536 Obg Predicted GTPase [ 98.5 7.2E-08 1.6E-12 91.0 4.1 56 219-275 161-220 (369)
161 cd04104 p47_IIGP_like p47 (47- 98.5 1.5E-07 3.3E-12 83.2 5.9 59 217-275 1-65 (197)
162 PRK05291 trmE tRNA modificatio 98.5 7E-07 1.5E-11 88.9 11.1 115 81-201 246-369 (449)
163 COG5257 GCD11 Translation init 98.5 5.1E-07 1.1E-11 84.7 9.0 101 100-201 90-201 (415)
164 cd04145 M_R_Ras_like M-Ras/R-R 98.5 6E-07 1.3E-11 75.5 8.8 98 100-198 54-160 (164)
165 cd04149 Arf6 Arf6 subfamily. 98.5 4.4E-07 9.5E-12 78.0 8.1 97 100-197 57-165 (168)
166 cd01862 Rab7 Rab7 subfamily. 98.5 7.7E-07 1.7E-11 75.5 9.4 100 100-200 53-165 (172)
167 cd01887 IF2_eIF5B IF2/eIF5B (i 98.5 1.6E-07 3.4E-12 79.4 5.1 54 219-273 2-61 (168)
168 cd01878 HflX HflX subfamily. 98.5 1.9E-06 4E-11 76.0 12.2 97 100-199 93-202 (204)
169 cd01897 NOG NOG1 is a nucleola 98.5 7.9E-07 1.7E-11 75.3 9.4 80 120-199 79-165 (168)
170 PRK12298 obgE GTPase CgtA; Rev 98.5 9.6E-07 2.1E-11 86.3 11.0 122 82-203 190-334 (390)
171 cd04150 Arf1_5_like Arf1-Arf5- 98.5 5.5E-07 1.2E-11 76.5 8.2 98 100-198 48-157 (159)
172 KOG0410 Predicted GTP binding 98.5 1.5E-07 3.2E-12 88.3 4.9 66 219-285 180-249 (410)
173 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.5 6.5E-07 1.4E-11 77.1 8.7 97 100-197 63-171 (174)
174 cd01861 Rab6 Rab6 subfamily. 98.5 2.2E-07 4.7E-12 78.1 5.3 54 219-273 2-60 (161)
175 cd04106 Rab23_lke Rab23-like s 98.5 9.2E-07 2E-11 74.3 9.1 98 100-198 55-159 (162)
176 smart00175 RAB Rab subfamily o 98.5 1E-06 2.2E-11 74.0 9.2 99 100-199 53-159 (164)
177 cd01886 EF-G Elongation factor 98.5 1.3E-06 2.8E-11 81.4 10.7 114 72-186 38-159 (270)
178 cd04101 RabL4 RabL4 (Rab-like4 98.5 1.2E-06 2.5E-11 74.0 9.5 99 100-199 56-161 (164)
179 cd01881 Obg_like The Obg-like 98.4 5.1E-07 1.1E-11 76.7 7.2 99 100-198 48-173 (176)
180 PRK00454 engB GTP-binding prot 98.4 2.4E-06 5.3E-11 74.3 11.6 83 119-201 105-193 (196)
181 cd00880 Era_like Era (E. coli 98.4 1.9E-06 4.1E-11 70.5 10.3 88 112-199 67-161 (163)
182 TIGR00487 IF-2 translation ini 98.4 1.2E-06 2.6E-11 89.8 10.9 146 44-199 82-247 (587)
183 cd04159 Arl10_like Arl10-like 98.4 9.6E-07 2.1E-11 73.0 8.5 99 100-199 48-158 (159)
184 cd04127 Rab27A Rab27a subfamil 98.4 1.1E-06 2.5E-11 75.4 9.2 99 100-199 67-174 (180)
185 TIGR00092 GTP-binding protein 98.4 2.9E-07 6.3E-12 88.8 5.9 58 218-275 3-80 (368)
186 TIGR03598 GTPase_YsxC ribosome 98.4 1.3E-06 2.9E-11 75.6 9.4 72 120-191 100-179 (179)
187 PRK05306 infB translation init 98.4 1.2E-06 2.6E-11 92.2 10.6 147 44-200 285-450 (787)
188 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.4 1.2E-06 2.6E-11 74.2 8.8 99 100-199 55-161 (166)
189 COG0532 InfB Translation initi 98.4 1.3E-06 2.8E-11 86.8 10.2 101 100-203 59-171 (509)
190 PF02421 FeoB_N: Ferrous iron 98.4 1.7E-07 3.6E-12 80.3 3.5 77 119-197 77-156 (156)
191 cd04158 ARD1 ARD1 subfamily. 98.4 7.8E-07 1.7E-11 76.2 7.6 99 100-199 47-158 (169)
192 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.4 1.3E-06 2.8E-11 76.0 8.8 100 100-200 56-168 (183)
193 cd00878 Arf_Arl Arf (ADP-ribos 98.4 1.1E-06 2.4E-11 73.8 8.1 98 100-198 47-156 (158)
194 cd01889 SelB_euk SelB subfamil 98.4 2.2E-07 4.7E-12 81.4 3.9 56 218-273 1-79 (192)
195 cd00154 Rab Rab family. Rab G 98.4 3.6E-07 7.9E-12 75.4 5.0 56 218-273 1-60 (159)
196 cd04119 RJL RJL (RabJ-Like) su 98.4 1.6E-06 3.4E-11 72.9 9.0 98 100-198 53-163 (168)
197 CHL00189 infB translation init 98.4 1.8E-06 4E-11 90.2 11.2 154 44-201 239-409 (742)
198 cd04112 Rab26 Rab26 subfamily. 98.4 1.8E-06 3.9E-11 75.5 9.6 102 100-202 54-163 (191)
199 PRK13768 GTPase; Provisional 98.4 1.3E-06 2.8E-11 80.6 9.0 100 102-201 103-246 (253)
200 cd04139 RalA_RalB RalA/RalB su 98.4 1.8E-06 3.8E-11 72.4 9.2 99 100-199 52-159 (164)
201 cd04138 H_N_K_Ras_like H-Ras/N 98.4 1.5E-06 3.4E-11 72.5 8.8 98 100-198 53-158 (162)
202 PLN03118 Rab family protein; P 98.4 5.7E-07 1.2E-11 80.0 6.3 58 217-274 14-74 (211)
203 cd01865 Rab3 Rab3 subfamily. 98.4 2.2E-06 4.8E-11 72.8 9.6 97 100-199 54-160 (165)
204 cd01860 Rab5_related Rab5-rela 98.4 6.7E-07 1.4E-11 75.3 6.3 56 218-273 2-61 (163)
205 PRK10218 GTP-binding protein; 98.4 1.7E-06 3.6E-11 89.0 10.3 118 71-189 41-172 (607)
206 TIGR00437 feoB ferrous iron tr 98.4 5.4E-07 1.2E-11 92.5 6.7 52 224-276 1-55 (591)
207 smart00177 ARF ARF-like small 98.4 1.5E-06 3.2E-11 75.1 8.5 99 100-199 61-171 (175)
208 cd01861 Rab6 Rab6 subfamily. 98.4 1.8E-06 3.9E-11 72.5 8.8 99 100-199 53-159 (161)
209 cd00154 Rab Rab family. Rab G 98.4 2E-06 4.3E-11 71.0 8.9 98 100-198 53-158 (159)
210 cd01893 Miro1 Miro1 subfamily. 98.4 1.6E-06 3.4E-11 73.9 8.4 100 100-200 51-162 (166)
211 cd01863 Rab18 Rab18 subfamily. 98.4 7.4E-07 1.6E-11 74.9 6.3 56 218-273 1-60 (161)
212 cd01867 Rab8_Rab10_Rab13_like 98.4 2.6E-06 5.5E-11 72.5 9.7 97 100-199 56-162 (167)
213 cd00880 Era_like Era (E. coli 98.4 3.9E-07 8.5E-12 74.7 4.5 56 222-277 1-60 (163)
214 cd01885 EF2 EF2 (for archaea a 98.4 2.1E-06 4.6E-11 77.7 9.4 90 70-160 35-138 (222)
215 cd01866 Rab2 Rab2 subfamily. 98.4 8.6E-07 1.9E-11 75.7 6.5 56 218-273 5-64 (168)
216 PLN00223 ADP-ribosylation fact 98.4 2.1E-06 4.4E-11 74.8 9.0 98 100-198 65-174 (181)
217 smart00178 SAR Sar1p-like memb 98.4 1.6E-06 3.5E-11 75.6 8.2 98 100-198 65-181 (184)
218 COG4917 EutP Ethanolamine util 98.4 3.4E-06 7.4E-11 69.1 9.3 100 100-200 41-144 (148)
219 cd01864 Rab19 Rab19 subfamily. 98.3 2.4E-06 5.3E-11 72.3 9.1 98 100-198 56-162 (165)
220 COG0481 LepA Membrane GTPase L 98.3 1.3E-06 2.9E-11 85.5 8.2 125 73-199 46-183 (603)
221 cd01868 Rab11_like Rab11-like. 98.3 9.5E-07 2.1E-11 74.7 6.4 55 218-273 4-63 (165)
222 smart00173 RAS Ras subfamily o 98.3 2.3E-06 4.9E-11 72.2 8.6 99 100-199 52-159 (164)
223 cd01850 CDC_Septin CDC/Septin. 98.3 8E-07 1.7E-11 83.0 6.3 59 216-274 3-75 (276)
224 PRK11058 GTPase HflX; Provisio 98.3 4.5E-06 9.7E-11 82.6 11.8 119 80-201 226-361 (426)
225 cd00877 Ran Ran (Ras-related n 98.3 1.4E-06 3E-11 74.5 7.3 99 100-199 53-156 (166)
226 PTZ00099 rab6; Provisional 98.3 2E-06 4.4E-11 74.9 8.4 101 100-201 33-141 (176)
227 cd04108 Rab36_Rab34 Rab34/Rab3 98.3 2.7E-06 5.9E-11 73.1 9.1 102 100-202 53-165 (170)
228 cd00879 Sar1 Sar1 subfamily. 98.3 2.1E-06 4.6E-11 74.5 8.5 99 100-199 67-188 (190)
229 cd04107 Rab32_Rab38 Rab38/Rab3 98.3 2.5E-06 5.4E-11 75.2 9.0 100 100-200 54-166 (201)
230 cd04154 Arl2 Arl2 subfamily. 98.3 7.9E-07 1.7E-11 76.3 5.6 55 217-273 14-69 (173)
231 cd04132 Rho4_like Rho4-like su 98.3 3.3E-06 7.1E-11 73.1 9.5 101 100-201 53-166 (187)
232 PRK12297 obgE GTPase CgtA; Rev 98.3 2.1E-06 4.5E-11 84.7 9.1 101 100-202 210-327 (424)
233 cd04110 Rab35 Rab35 subfamily. 98.3 2.7E-06 5.9E-11 75.0 8.9 98 100-200 59-165 (199)
234 cd04144 Ras2 Ras2 subfamily. 98.3 3.6E-06 7.7E-11 73.6 9.5 99 100-199 51-160 (190)
235 cd04109 Rab28 Rab28 subfamily. 98.3 3.2E-06 7E-11 75.5 9.3 100 100-200 54-164 (215)
236 TIGR00491 aIF-2 translation in 98.3 4.9E-06 1.1E-10 85.3 11.8 102 100-202 73-216 (590)
237 cd04122 Rab14 Rab14 subfamily. 98.3 3.8E-06 8.2E-11 71.3 9.3 95 100-197 55-159 (166)
238 cd04113 Rab4 Rab4 subfamily. 98.3 3.8E-06 8.2E-11 70.7 9.0 98 100-198 53-158 (161)
239 cd01868 Rab11_like Rab11-like. 98.3 3.9E-06 8.4E-11 70.9 9.1 96 100-198 56-161 (165)
240 cd04155 Arl3 Arl3 subfamily. 98.3 1.1E-06 2.3E-11 74.9 5.6 56 217-273 14-69 (173)
241 cd00881 GTP_translation_factor 98.3 5.7E-07 1.2E-11 77.2 3.9 56 219-274 1-74 (189)
242 cd04123 Rab21 Rab21 subfamily. 98.3 4.4E-06 9.6E-11 69.7 9.2 99 100-199 53-159 (162)
243 cd04156 ARLTS1 ARLTS1 subfamil 98.3 8.8E-07 1.9E-11 74.4 4.9 53 219-273 1-55 (160)
244 PRK12317 elongation factor 1-a 98.3 6.7E-07 1.5E-11 88.3 4.8 58 216-273 5-95 (425)
245 cd04136 Rap_like Rap-like subf 98.3 3.6E-06 7.9E-11 70.6 8.6 98 101-199 54-160 (163)
246 cd04121 Rab40 Rab40 subfamily. 98.3 4.1E-06 9E-11 73.8 9.2 98 101-199 60-164 (189)
247 smart00176 RAN Ran (Ras-relate 98.3 3.3E-06 7.1E-11 75.1 8.6 99 100-199 48-151 (200)
248 cd04140 ARHI_like ARHI subfami 98.3 3.5E-06 7.6E-11 71.6 8.4 100 100-200 53-163 (165)
249 cd04119 RJL RJL (RabJ-Like) su 98.3 1.1E-06 2.5E-11 73.8 5.3 55 218-273 1-60 (168)
250 KOG1145 Mitochondrial translat 98.3 4.6E-06 1E-10 83.0 10.2 155 40-202 144-316 (683)
251 PRK00007 elongation factor G; 98.3 5.7E-06 1.2E-10 86.6 11.6 116 70-187 47-171 (693)
252 cd01866 Rab2 Rab2 subfamily. 98.3 5.4E-06 1.2E-10 70.7 9.5 97 100-199 57-163 (168)
253 cd01860 Rab5_related Rab5-rela 98.3 5.2E-06 1.1E-10 69.7 9.2 98 101-199 55-160 (163)
254 cd04147 Ras_dva Ras-dva subfam 98.3 4.2E-06 9.1E-11 73.7 8.9 100 100-200 51-161 (198)
255 cd00876 Ras Ras family. The R 98.3 5.8E-06 1.3E-10 68.8 9.4 98 100-198 51-157 (160)
256 PRK12739 elongation factor G; 98.3 6E-06 1.3E-10 86.4 11.5 92 70-162 45-140 (691)
257 TIGR02836 spore_IV_A stage IV 98.3 1E-06 2.2E-11 85.7 5.2 59 217-275 17-104 (492)
258 cd04145 M_R_Ras_like M-Ras/R-R 98.3 1.2E-06 2.7E-11 73.6 5.1 54 218-273 3-61 (164)
259 cd04160 Arfrp1 Arfrp1 subfamil 98.3 9.2E-07 2E-11 74.8 4.2 56 219-274 1-62 (167)
260 PTZ00133 ADP-ribosylation fact 98.2 3.1E-06 6.7E-11 73.7 7.6 99 100-199 65-175 (182)
261 cd01863 Rab18 Rab18 subfamily. 98.2 5.2E-06 1.1E-10 69.7 8.8 98 100-198 53-158 (161)
262 cd04175 Rap1 Rap1 subgroup. T 98.2 4.8E-06 1E-10 70.4 8.6 98 100-198 53-159 (164)
263 cd00878 Arf_Arl Arf (ADP-ribos 98.2 1.3E-06 2.7E-11 73.4 5.0 54 219-274 1-55 (158)
264 PRK04213 GTP-binding protein; 98.2 1E-05 2.2E-10 71.0 11.0 83 117-200 87-190 (201)
265 smart00175 RAB Rab subfamily o 98.2 1.9E-06 4.1E-11 72.3 6.0 55 218-273 1-60 (164)
266 PTZ00369 Ras-like protein; Pro 98.2 4.1E-06 8.8E-11 73.2 8.2 99 100-199 57-164 (189)
267 PRK15467 ethanolamine utilizat 98.2 7.9E-07 1.7E-11 75.9 3.5 48 219-275 3-50 (158)
268 cd04157 Arl6 Arl6 subfamily. 98.2 1.4E-06 3E-11 73.1 5.0 55 219-274 1-57 (162)
269 cd04114 Rab30 Rab30 subfamily. 98.2 6.7E-06 1.5E-10 69.6 9.3 99 100-199 60-166 (169)
270 cd04113 Rab4 Rab4 subfamily. 98.2 2.2E-06 4.8E-11 72.1 6.0 56 218-273 1-60 (161)
271 PRK04004 translation initiatio 98.2 9.4E-06 2E-10 83.3 11.6 99 100-199 75-215 (586)
272 cd04118 Rab24 Rab24 subfamily. 98.2 5.1E-06 1.1E-10 72.4 8.4 99 102-201 56-165 (193)
273 cd04146 RERG_RasL11_like RERG/ 98.2 3.5E-06 7.5E-11 71.4 7.1 99 100-198 51-160 (165)
274 cd01867 Rab8_Rab10_Rab13_like 98.2 2.7E-06 5.8E-11 72.4 6.4 56 217-273 3-63 (167)
275 cd04118 Rab24 Rab24 subfamily. 98.2 2.2E-06 4.8E-11 74.7 5.9 55 218-273 1-61 (193)
276 cd04162 Arl9_Arfrp2_like Arl9/ 98.2 3.2E-06 6.9E-11 72.2 6.8 95 102-197 50-161 (164)
277 cd04167 Snu114p Snu114p subfam 98.2 8.4E-06 1.8E-10 72.8 9.8 90 70-160 38-136 (213)
278 cd04120 Rab12 Rab12 subfamily. 98.2 7.3E-06 1.6E-10 73.0 9.3 99 100-199 53-160 (202)
279 TIGR00484 EF-G translation elo 98.2 7.2E-06 1.6E-10 85.8 10.7 92 70-162 47-142 (689)
280 cd04138 H_N_K_Ras_like H-Ras/N 98.2 2.7E-06 5.8E-11 71.0 6.1 54 218-273 2-60 (162)
281 cd04128 Spg1 Spg1p. Spg1p (se 98.2 6.2E-06 1.4E-10 71.9 8.7 99 101-200 54-164 (182)
282 PRK14845 translation initiatio 98.2 7.9E-06 1.7E-10 88.2 11.0 102 100-202 530-673 (1049)
283 smart00178 SAR Sar1p-like memb 98.2 2.1E-06 4.5E-11 74.8 5.5 55 217-273 17-72 (184)
284 cd01864 Rab19 Rab19 subfamily. 98.2 2.9E-06 6.4E-11 71.8 6.3 56 218-273 4-63 (165)
285 cd01884 EF_Tu EF-Tu subfamily. 98.2 1.7E-06 3.7E-11 76.7 5.0 56 218-273 3-76 (195)
286 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.2 2.3E-06 4.9E-11 73.7 5.5 54 218-273 16-70 (174)
287 cd00157 Rho Rho (Ras homology) 98.2 2.5E-06 5.5E-11 72.2 5.7 98 100-198 52-169 (171)
288 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.2 2.4E-06 5.2E-11 72.4 5.5 55 218-273 3-62 (166)
289 cd01891 TypA_BipA TypA (tyrosi 98.2 1.6E-06 3.4E-11 76.1 4.5 56 219-274 4-77 (194)
290 cd04142 RRP22 RRP22 subfamily. 98.2 4.2E-06 9E-11 74.2 7.2 56 218-274 1-61 (198)
291 CHL00071 tufA elongation facto 98.2 2E-06 4.2E-11 84.7 5.6 58 216-273 11-86 (409)
292 cd01876 YihA_EngB The YihA (En 98.2 1.8E-05 3.9E-10 65.9 10.7 82 119-200 80-169 (170)
293 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.2 9.9E-06 2.1E-10 69.8 9.3 98 100-198 54-160 (172)
294 PF05049 IIGP: Interferon-indu 98.2 2.5E-06 5.5E-11 82.5 6.1 60 217-277 35-101 (376)
295 KOG1547 Septin CDC10 and relat 98.2 2.6E-06 5.6E-11 77.1 5.7 60 215-274 44-116 (336)
296 cd04168 TetM_like Tet(M)-like 98.2 1.1E-05 2.4E-10 73.6 9.9 88 73-161 39-130 (237)
297 PLN03118 Rab family protein; P 98.2 8E-06 1.7E-10 72.6 8.7 100 100-200 66-175 (211)
298 cd01865 Rab3 Rab3 subfamily. 98.2 3.8E-06 8.2E-11 71.4 6.3 55 218-273 2-61 (165)
299 cd01890 LepA LepA subfamily. 98.2 1.3E-06 2.9E-11 74.7 3.5 56 219-274 2-79 (179)
300 cd04126 Rab20 Rab20 subfamily. 98.2 7E-06 1.5E-10 74.2 8.3 99 100-199 48-187 (220)
301 cd04175 Rap1 Rap1 subgroup. T 98.2 2.3E-06 4.9E-11 72.4 4.9 54 218-273 2-60 (164)
302 cd04176 Rap2 Rap2 subgroup. T 98.2 6.7E-06 1.5E-10 69.3 7.8 97 101-198 54-159 (163)
303 smart00173 RAS Ras subfamily o 98.2 3.4E-06 7.3E-11 71.1 5.7 54 219-274 2-60 (164)
304 cd04159 Arl10_like Arl10-like 98.2 3.5E-06 7.5E-11 69.6 5.7 53 220-273 2-55 (159)
305 COG0218 Predicted GTPase [Gene 98.2 2.1E-05 4.6E-10 69.5 10.7 93 108-200 91-195 (200)
306 cd00879 Sar1 Sar1 subfamily. 98.2 3.2E-06 6.9E-11 73.4 5.6 55 217-273 19-74 (190)
307 TIGR02528 EutP ethanolamine ut 98.1 1.8E-06 3.9E-11 71.3 3.8 44 219-272 2-45 (142)
308 smart00174 RHO Rho (Ras homolo 98.1 5.7E-06 1.2E-10 70.5 7.0 98 101-199 51-169 (174)
309 cd04106 Rab23_lke Rab23-like s 98.1 3.3E-06 7.2E-11 70.9 5.5 55 218-273 1-62 (162)
310 cd04136 Rap_like Rap-like subf 98.1 2.4E-06 5.3E-11 71.7 4.6 55 218-274 2-61 (163)
311 COG2229 Predicted GTPase [Gene 98.1 1.7E-05 3.7E-10 69.0 9.8 95 101-196 73-172 (187)
312 KOG2486 Predicted GTPase [Gene 98.1 2.5E-06 5.4E-11 78.7 4.9 56 217-272 136-193 (320)
313 cd04112 Rab26 Rab26 subfamily. 98.1 3.8E-06 8.1E-11 73.5 5.9 54 219-272 2-60 (191)
314 cd04155 Arl3 Arl3 subfamily. 98.1 8.3E-06 1.8E-10 69.4 7.9 97 100-197 62-170 (173)
315 cd04139 RalA_RalB RalA/RalB su 98.1 2.4E-06 5.1E-11 71.6 4.4 53 219-273 2-59 (164)
316 cd04125 RabA_like RabA-like su 98.1 1.3E-05 2.8E-10 69.7 9.1 100 100-200 53-160 (188)
317 cd01893 Miro1 Miro1 subfamily. 98.1 2.3E-06 4.9E-11 72.9 4.2 54 218-273 1-58 (166)
318 KOG1486 GTP-binding protein DR 98.1 3.7E-06 8E-11 76.6 5.6 60 215-275 60-122 (364)
319 cd01862 Rab7 Rab7 subfamily. 98.1 5.1E-06 1.1E-10 70.4 6.2 55 218-273 1-60 (172)
320 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.1 4.7E-06 1E-10 72.5 6.0 55 217-273 3-63 (183)
321 cd04137 RheB Rheb (Ras Homolog 98.1 2.9E-06 6.3E-11 72.9 4.5 55 218-274 2-61 (180)
322 TIGR00231 small_GTP small GTP- 98.1 2.3E-06 5E-11 70.0 3.7 98 100-198 54-160 (161)
323 cd00876 Ras Ras family. The R 98.1 2.7E-06 5.8E-11 70.9 4.2 54 219-274 1-59 (160)
324 cd00882 Ras_like_GTPase Ras-li 98.1 1.3E-05 2.8E-10 64.5 8.1 97 100-197 49-155 (157)
325 cd04149 Arf6 Arf6 subfamily. 98.1 4.6E-06 1E-10 71.6 5.7 55 217-273 9-64 (168)
326 cd04130 Wrch_1 Wrch-1 subfamil 98.1 5.3E-06 1.2E-10 71.1 6.0 96 101-197 53-169 (173)
327 cd04125 RabA_like RabA-like su 98.1 5.4E-06 1.2E-10 72.1 6.0 56 218-273 1-60 (188)
328 cd00157 Rho Rho (Ras homology) 98.1 6.1E-06 1.3E-10 69.8 6.1 56 218-274 1-60 (171)
329 PLN03108 Rab family protein; P 98.1 2.6E-05 5.7E-10 69.5 10.4 100 100-200 59-167 (210)
330 cd04111 Rab39 Rab39 subfamily. 98.1 1.5E-05 3.3E-10 71.2 8.9 100 100-200 56-164 (211)
331 cd04151 Arl1 Arl1 subfamily. 98.1 4.6E-06 1E-10 70.2 5.2 53 219-273 1-54 (158)
332 cd04177 RSR1 RSR1 subgroup. R 98.1 6.4E-06 1.4E-10 70.1 6.1 55 218-274 2-61 (168)
333 cd04140 ARHI_like ARHI subfami 98.1 3.8E-06 8.2E-11 71.4 4.6 54 218-274 2-61 (165)
334 cd01892 Miro2 Miro2 subfamily. 98.1 4.3E-06 9.2E-11 71.8 5.0 86 115-200 72-164 (169)
335 KOG1144 Translation initiation 98.1 1.5E-05 3.2E-10 81.7 9.3 103 100-203 544-688 (1064)
336 cd01874 Cdc42 Cdc42 subfamily. 98.1 1.2E-05 2.5E-10 69.6 7.6 97 102-199 55-172 (175)
337 PRK12740 elongation factor G; 98.1 3.4E-05 7.4E-10 80.5 12.3 90 71-161 33-126 (668)
338 cd04123 Rab21 Rab21 subfamily. 98.1 5.4E-06 1.2E-10 69.2 5.3 55 218-273 1-60 (162)
339 PLN03071 GTP-binding nuclear p 98.1 1.1E-05 2.3E-10 72.6 7.4 98 100-198 66-168 (219)
340 cd04122 Rab14 Rab14 subfamily. 98.1 8.8E-06 1.9E-10 69.0 6.4 54 218-273 3-62 (166)
341 cd04169 RF3 RF3 subfamily. Pe 98.1 4.8E-05 1E-09 70.7 11.8 86 76-162 49-138 (267)
342 PRK05306 infB translation init 98.1 1.3E-05 2.8E-10 84.6 8.8 59 215-274 288-349 (787)
343 cd04142 RRP22 RRP22 subfamily. 98.1 2.1E-05 4.6E-10 69.6 8.9 84 115-198 75-170 (198)
344 cd04116 Rab9 Rab9 subfamily. 98.1 3.2E-05 6.8E-10 65.7 9.7 97 101-198 59-167 (170)
345 PRK09554 feoB ferrous iron tra 98.0 2E-05 4.4E-10 83.2 10.1 81 119-201 84-167 (772)
346 cd04135 Tc10 TC10 subfamily. 98.0 9E-06 1.9E-10 69.3 6.1 54 218-273 1-59 (174)
347 PRK12735 elongation factor Tu; 98.0 7E-06 1.5E-10 80.4 6.1 58 216-273 11-86 (396)
348 cd04116 Rab9 Rab9 subfamily. 98.0 9.8E-06 2.1E-10 68.9 6.2 56 217-273 5-65 (170)
349 cd04161 Arl2l1_Arl13_like Arl2 98.0 1.7E-05 3.8E-10 67.7 7.8 97 100-197 47-164 (167)
350 cd04161 Arl2l1_Arl13_like Arl2 98.0 7E-06 1.5E-10 70.2 5.1 52 220-273 2-54 (167)
351 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.0 3E-05 6.5E-10 70.7 9.4 98 101-199 66-185 (232)
352 cd01871 Rac1_like Rac1-like su 98.0 1.9E-05 4E-10 68.2 7.7 98 100-198 53-171 (174)
353 cd04124 RabL2 RabL2 subfamily. 98.0 9.9E-06 2.1E-10 68.6 5.9 56 218-273 1-60 (161)
354 TIGR00487 IF-2 translation ini 98.0 7.2E-06 1.6E-10 84.1 5.9 59 214-273 84-146 (587)
355 cd01870 RhoA_like RhoA-like su 98.0 1.7E-05 3.8E-10 67.5 7.4 99 100-199 53-172 (175)
356 cd04137 RheB Rheb (Ras Homolog 98.0 4.8E-05 1E-09 65.3 10.2 102 100-202 53-163 (180)
357 KOG0410 Predicted GTP binding 98.0 6.4E-06 1.4E-10 77.5 4.8 143 46-200 175-339 (410)
358 cd04135 Tc10 TC10 subfamily. 98.0 1.1E-05 2.4E-10 68.7 6.0 98 100-198 52-170 (174)
359 cd04110 Rab35 Rab35 subfamily. 98.0 1.2E-05 2.6E-10 70.9 6.4 56 217-273 6-66 (199)
360 PLN03110 Rab GTPase; Provision 98.0 4.5E-05 9.8E-10 68.3 10.0 97 101-200 66-172 (216)
361 cd04158 ARD1 ARD1 subfamily. 98.0 9.8E-06 2.1E-10 69.3 5.5 52 219-274 1-55 (169)
362 cd01886 EF-G Elongation factor 98.0 6.3E-06 1.4E-10 76.7 4.6 56 219-274 1-76 (270)
363 PF00735 Septin: Septin; Inte 98.0 6.4E-06 1.4E-10 77.1 4.6 58 217-274 4-75 (281)
364 cd04115 Rab33B_Rab33A Rab33B/R 98.0 1.3E-05 2.9E-10 68.4 6.2 55 218-273 3-62 (170)
365 cd04176 Rap2 Rap2 subgroup. T 98.0 1.3E-05 2.9E-10 67.4 6.0 54 218-273 2-60 (163)
366 COG1217 TypA Predicted membran 98.0 4.3E-05 9.2E-10 75.0 10.0 114 74-188 44-171 (603)
367 cd04132 Rho4_like Rho4-like su 98.0 1.2E-05 2.5E-10 69.6 5.7 55 218-273 1-60 (187)
368 cd04115 Rab33B_Rab33A Rab33B/R 98.0 4.3E-05 9.3E-10 65.2 9.1 101 100-201 55-165 (170)
369 cd01875 RhoG RhoG subfamily. 98.0 3E-05 6.5E-10 68.0 8.2 99 100-199 55-174 (191)
370 cd04133 Rop_like Rop subfamily 98.0 1.8E-05 3.8E-10 68.9 6.7 98 101-199 54-170 (176)
371 TIGR00437 feoB ferrous iron tr 98.0 1.5E-05 3.3E-10 81.9 7.2 80 119-200 71-153 (591)
372 KOG1489 Predicted GTP-binding 98.0 3.2E-05 7E-10 72.6 8.6 98 100-199 248-364 (366)
373 cd04144 Ras2 Ras2 subfamily. 98.0 1.1E-05 2.3E-10 70.6 5.2 53 219-273 1-58 (190)
374 cd00877 Ran Ran (Ras-related n 98.0 1.5E-05 3.2E-10 68.1 6.0 56 219-274 2-61 (166)
375 PLN03110 Rab GTPase; Provision 98.0 1.5E-05 3.3E-10 71.4 6.2 56 217-273 12-72 (216)
376 cd04109 Rab28 Rab28 subfamily. 98.0 1.2E-05 2.6E-10 71.8 5.5 54 218-272 1-60 (215)
377 cd04117 Rab15 Rab15 subfamily. 98.0 4E-05 8.7E-10 65.0 8.5 97 102-199 55-159 (161)
378 KOG1423 Ras-like GTPase ERA [C 98.0 7.6E-05 1.7E-09 69.9 10.8 93 112-204 147-273 (379)
379 cd04101 RabL4 RabL4 (Rab-like4 97.9 1.4E-05 3.1E-10 67.2 5.7 56 218-273 1-63 (164)
380 cd04127 Rab27A Rab27a subfamil 97.9 1.3E-05 2.9E-10 68.7 5.5 25 217-241 4-28 (180)
381 PLN03127 Elongation factor Tu; 97.9 1.2E-05 2.6E-10 80.1 5.9 59 216-274 60-136 (447)
382 cd04150 Arf1_5_like Arf1-Arf5- 97.9 1.4E-05 3E-10 67.8 5.3 54 218-273 1-55 (159)
383 cd04114 Rab30 Rab30 subfamily. 97.9 1.5E-05 3.3E-10 67.4 5.5 56 217-273 7-67 (169)
384 PTZ00133 ADP-ribosylation fact 97.9 1.5E-05 3.3E-10 69.3 5.7 55 217-273 17-72 (182)
385 TIGR00450 mnmE_trmE_thdF tRNA 97.9 5.9E-05 1.3E-09 75.0 10.3 95 100-199 255-357 (442)
386 cd04131 Rnd Rnd subfamily. Th 97.9 3.8E-05 8.2E-10 66.8 7.9 98 101-199 54-173 (178)
387 cd04107 Rab32_Rab38 Rab38/Rab3 97.9 1.6E-05 3.6E-10 70.0 5.7 55 218-273 1-61 (201)
388 PRK05506 bifunctional sulfate 97.9 6.2E-06 1.4E-10 85.4 3.3 27 217-243 24-50 (632)
389 cd04143 Rhes_like Rhes_like su 97.9 5.6E-05 1.2E-09 69.4 9.2 101 100-201 52-170 (247)
390 cd04177 RSR1 RSR1 subgroup. R 97.9 4.7E-05 1E-09 64.8 8.1 98 100-198 53-160 (168)
391 smart00177 ARF ARF-like small 97.9 2.1E-05 4.5E-10 67.9 5.8 55 217-273 13-68 (175)
392 KOG0461 Selenocysteine-specifi 97.9 7.7E-05 1.7E-09 70.8 9.9 98 100-199 74-190 (522)
393 KOG0459 Polypeptide release fa 97.9 9.5E-06 2.1E-10 78.2 3.8 125 69-194 128-278 (501)
394 cd04111 Rab39 Rab39 subfamily. 97.9 1.7E-05 3.8E-10 70.8 5.3 55 218-273 3-63 (211)
395 PF08477 Miro: Miro-like prote 97.9 1.8E-05 3.8E-10 63.3 4.8 57 219-275 1-63 (119)
396 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 97.9 5.9E-05 1.3E-09 65.9 8.5 97 102-199 59-177 (182)
397 cd04134 Rho3 Rho3 subfamily. 97.9 3.3E-05 7.1E-10 67.5 6.8 99 101-200 53-172 (189)
398 cd04146 RERG_RasL11_like RERG/ 97.9 1.6E-05 3.4E-10 67.3 4.6 54 219-274 1-59 (165)
399 cd04148 RGK RGK subfamily. Th 97.9 5.6E-05 1.2E-09 68.0 8.4 98 100-200 54-161 (221)
400 smart00174 RHO Rho (Ras homolo 97.9 2.2E-05 4.7E-10 66.9 5.4 53 220-273 1-57 (174)
401 cd04108 Rab36_Rab34 Rab34/Rab3 97.9 2.2E-05 4.8E-10 67.4 5.5 54 219-273 2-60 (170)
402 COG0536 Obg Predicted GTPase [ 97.9 5.7E-05 1.2E-09 71.7 8.4 104 100-204 211-335 (369)
403 PLN03108 Rab family protein; P 97.9 3.1E-05 6.7E-10 69.0 6.5 57 217-273 6-66 (210)
404 PRK00049 elongation factor Tu; 97.9 1.9E-05 4E-10 77.5 5.3 58 216-273 11-86 (396)
405 PTZ00369 Ras-like protein; Pro 97.8 3E-05 6.5E-10 67.6 6.0 56 217-274 5-65 (189)
406 cd04117 Rab15 Rab15 subfamily. 97.8 3.2E-05 7E-10 65.5 6.0 54 219-273 2-60 (161)
407 TIGR00475 selB selenocysteine- 97.8 2.1E-05 4.5E-10 80.8 5.4 54 219-272 2-60 (581)
408 cd04148 RGK RGK subfamily. Th 97.8 2.5E-05 5.4E-10 70.3 5.3 55 219-273 2-61 (221)
409 cd01870 RhoA_like RhoA-like su 97.8 3.7E-05 8.1E-10 65.5 6.1 53 219-273 3-60 (175)
410 cd04147 Ras_dva Ras-dva subfam 97.8 2.5E-05 5.5E-10 68.7 5.2 54 219-274 1-59 (198)
411 PRK12736 elongation factor Tu; 97.8 2.4E-05 5.2E-10 76.6 5.2 58 216-273 11-86 (394)
412 cd04170 EF-G_bact Elongation f 97.8 1.8E-05 3.8E-10 73.3 4.0 22 219-240 1-22 (268)
413 TIGR00484 EF-G translation elo 97.8 2.6E-05 5.7E-10 81.6 5.8 58 218-275 11-88 (689)
414 cd04170 EF-G_bact Elongation f 97.8 0.00025 5.5E-09 65.6 11.7 115 77-193 43-164 (268)
415 PRK00741 prfC peptide chain re 97.8 0.00013 2.8E-09 74.1 10.4 88 74-162 55-146 (526)
416 cd04168 TetM_like Tet(M)-like 97.8 2.1E-05 4.5E-10 71.9 4.2 56 219-274 1-76 (237)
417 PLN03071 GTP-binding nuclear p 97.8 5.1E-05 1.1E-09 68.2 6.6 59 216-274 12-74 (219)
418 PLN00223 ADP-ribosylation fact 97.8 4.1E-05 8.9E-10 66.6 5.8 54 217-272 17-71 (181)
419 TIGR00485 EF-Tu translation el 97.8 3.4E-05 7.3E-10 75.6 5.7 58 216-273 11-86 (394)
420 cd04130 Wrch_1 Wrch-1 subfamil 97.8 3.6E-05 7.8E-10 65.9 5.3 54 218-273 1-59 (173)
421 COG1100 GTPase SAR1 and relate 97.8 4.2E-05 9E-10 67.8 5.8 56 218-274 6-66 (219)
422 cd04105 SR_beta Signal recogni 97.8 4.1E-05 8.8E-10 68.1 5.5 54 219-274 2-60 (203)
423 TIGR00491 aIF-2 translation in 97.8 2.7E-05 5.8E-10 80.0 4.9 35 218-254 5-40 (590)
424 cd04141 Rit_Rin_Ric Rit/Rin/Ri 97.8 5.7E-05 1.2E-09 65.0 6.3 54 218-273 3-61 (172)
425 cd01896 DRG The developmentall 97.8 0.00016 3.5E-09 65.8 9.5 48 148-200 177-224 (233)
426 cd04126 Rab20 Rab20 subfamily. 97.8 3.7E-05 7.9E-10 69.5 5.2 55 218-274 1-56 (220)
427 CHL00189 infB translation init 97.7 2.8E-05 6E-10 81.5 4.7 58 215-273 242-306 (742)
428 cd01873 RhoBTB RhoBTB subfamil 97.7 8.8E-05 1.9E-09 65.6 7.3 82 117-198 84-192 (195)
429 PF10662 PduV-EutP: Ethanolami 97.7 2.6E-05 5.7E-10 65.7 3.7 45 219-273 3-47 (143)
430 cd01882 BMS1 Bms1. Bms1 is an 97.7 0.00023 4.9E-09 64.4 10.0 84 100-187 87-181 (225)
431 PRK07560 elongation factor EF- 97.7 0.00015 3.3E-09 76.4 10.0 90 70-160 55-152 (731)
432 PRK00007 elongation factor G; 97.7 3.4E-05 7.3E-10 80.9 5.0 57 218-274 11-87 (693)
433 cd04169 RF3 RF3 subfamily. Pe 97.7 5.8E-05 1.2E-09 70.2 5.7 22 219-240 4-25 (267)
434 cd00882 Ras_like_GTPase Ras-li 97.7 3.1E-05 6.7E-10 62.3 3.4 51 222-274 1-57 (157)
435 cd04134 Rho3 Rho3 subfamily. 97.7 8E-05 1.7E-09 65.0 6.2 54 219-273 2-59 (189)
436 PLN03126 Elongation factor Tu; 97.7 5.5E-05 1.2E-09 75.9 5.8 58 216-273 80-155 (478)
437 PF00025 Arf: ADP-ribosylation 97.7 3E-05 6.5E-10 67.2 3.3 83 116-198 77-172 (175)
438 cd01874 Cdc42 Cdc42 subfamily. 97.7 9.5E-05 2.1E-09 63.9 6.4 55 218-274 2-61 (175)
439 PRK12739 elongation factor G; 97.7 3.9E-05 8.5E-10 80.3 4.6 58 217-274 8-85 (691)
440 PTZ00416 elongation factor 2; 97.7 0.0001 2.2E-09 78.8 7.8 89 71-160 55-157 (836)
441 KOG0094 GTPase Rab6/YPT6/Ryh1, 97.7 0.00056 1.2E-08 60.2 10.8 102 102-203 76-186 (221)
442 cd04162 Arl9_Arfrp2_like Arl9/ 97.7 6.7E-05 1.5E-09 64.0 5.1 54 220-274 2-56 (164)
443 PRK13351 elongation factor G; 97.6 0.0004 8.7E-09 72.8 11.7 90 72-162 47-140 (687)
444 TIGR00503 prfC peptide chain r 97.6 0.00023 5E-09 72.3 9.5 88 73-161 55-146 (527)
445 COG0480 FusA Translation elong 97.6 0.00018 4E-09 74.9 8.8 92 70-162 47-143 (697)
446 PRK04004 translation initiatio 97.6 7E-05 1.5E-09 77.0 5.6 26 216-241 5-30 (586)
447 PLN00116 translation elongatio 97.6 0.00027 5.8E-09 75.7 10.1 89 71-160 55-163 (843)
448 PRK10512 selenocysteinyl-tRNA- 97.6 7.8E-05 1.7E-09 77.0 5.9 54 219-272 2-61 (614)
449 cd01882 BMS1 Bms1. Bms1 is an 97.6 8.6E-05 1.9E-09 67.2 5.3 57 215-273 37-94 (225)
450 KOG2655 Septin family protein 97.6 6.9E-05 1.5E-09 72.0 4.7 59 216-274 20-91 (366)
451 cd04143 Rhes_like Rhes_like su 97.6 9.8E-05 2.1E-09 67.8 5.4 54 219-274 2-60 (247)
452 KOG0084 GTPase Rab1/YPT1, smal 97.6 0.00048 1E-08 60.7 9.3 127 68-196 25-166 (205)
453 cd01892 Miro2 Miro2 subfamily. 97.6 0.00016 3.5E-09 61.9 6.4 56 217-273 4-65 (169)
454 PF00009 GTP_EFTU: Elongation 97.6 3.2E-05 6.9E-10 67.5 2.0 58 217-274 3-82 (188)
455 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 97.6 0.00036 7.7E-09 63.2 8.9 98 101-199 54-173 (222)
456 PF00350 Dynamin_N: Dynamin fa 97.6 7.6E-05 1.7E-09 63.4 4.2 31 220-250 1-31 (168)
457 PRK05124 cysN sulfate adenylyl 97.6 8.1E-05 1.7E-09 74.7 4.9 25 216-240 26-50 (474)
458 PTZ00132 GTP-binding nuclear p 97.6 0.00036 7.8E-09 62.1 8.5 98 100-198 62-164 (215)
459 KOG0078 GTP-binding protein SE 97.6 0.00041 8.9E-09 61.6 8.6 92 102-195 66-167 (207)
460 PRK09866 hypothetical protein; 97.5 0.00015 3.3E-09 74.2 6.4 56 218-274 70-129 (741)
461 cd04129 Rho2 Rho2 subfamily. 97.5 0.00023 5.1E-09 61.9 6.9 83 117-199 69-170 (187)
462 KOG0468 U5 snRNP-specific prot 97.5 0.00017 3.7E-09 73.4 6.6 90 70-160 164-262 (971)
463 cd01871 Rac1_like Rac1-like su 97.5 0.00014 3E-09 62.8 5.3 54 218-273 2-60 (174)
464 cd01883 EF1_alpha Eukaryotic e 97.5 8.2E-05 1.8E-09 66.8 4.0 55 219-273 1-88 (219)
465 KOG0466 Translation initiation 97.5 0.00018 3.9E-09 67.4 6.2 100 100-200 129-239 (466)
466 TIGR00483 EF-1_alpha translati 97.5 0.00013 2.7E-09 72.2 5.5 58 216-273 6-96 (426)
467 COG5019 CDC3 Septin family pro 97.5 0.00016 3.5E-09 69.2 5.8 59 216-274 22-94 (373)
468 PF00071 Ras: Ras family; Int 97.5 0.00024 5.2E-09 59.6 6.2 97 100-197 52-156 (162)
469 cd04128 Spg1 Spg1p. Spg1p (se 97.5 0.00023 5.1E-09 62.0 6.3 55 218-273 1-60 (182)
470 PTZ00132 GTP-binding nuclear p 97.4 0.00029 6.2E-09 62.7 6.3 57 217-273 9-69 (215)
471 cd04105 SR_beta Signal recogni 97.4 0.0004 8.7E-09 61.7 7.2 62 100-162 52-124 (203)
472 cd01885 EF2 EF2 (for archaea a 97.4 0.00022 4.8E-09 64.6 5.6 23 219-241 2-24 (222)
473 cd04167 Snu114p Snu114p subfam 97.4 8.8E-05 1.9E-09 66.2 2.8 23 219-241 2-24 (213)
474 cd04131 Rnd Rnd subfamily. Th 97.4 0.00034 7.4E-09 60.8 6.4 55 218-273 2-60 (178)
475 PF00071 Ras: Ras family; Int 97.4 0.00029 6.3E-09 59.0 5.7 54 219-273 1-59 (162)
476 TIGR02034 CysN sulfate adenyly 97.4 0.00013 2.8E-09 71.8 3.9 56 218-273 1-91 (406)
477 KOG0092 GTPase Rab5/YPT51 and 97.4 0.00019 4.2E-09 62.9 4.4 99 100-200 57-165 (200)
478 cd04121 Rab40 Rab40 subfamily. 97.3 0.00046 1E-08 60.7 6.4 56 217-273 6-66 (189)
479 cd04120 Rab12 Rab12 subfamily. 97.3 0.00041 9E-09 61.7 6.1 54 219-273 2-60 (202)
480 cd04102 RabL3 RabL3 (Rab-like3 97.3 0.00041 8.8E-09 61.9 5.9 56 218-273 1-65 (202)
481 COG0370 FeoB Fe2+ transport sy 97.3 0.00022 4.7E-09 73.1 4.3 82 119-202 80-164 (653)
482 cd04129 Rho2 Rho2 subfamily. 97.3 0.00052 1.1E-08 59.7 6.1 54 219-273 3-60 (187)
483 cd04103 Centaurin_gamma Centau 97.3 0.00076 1.7E-08 57.3 7.0 82 117-198 62-155 (158)
484 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 97.3 0.00055 1.2E-08 61.9 6.1 55 218-273 2-60 (222)
485 TIGR01393 lepA GTP-binding pro 97.2 0.00032 7E-09 72.3 4.9 57 219-275 5-83 (595)
486 TIGR00490 aEF-2 translation el 97.2 0.00059 1.3E-08 71.9 6.8 89 72-161 56-152 (720)
487 KOG1487 GTP-binding protein DR 97.2 0.00039 8.4E-09 63.9 4.4 57 218-275 60-119 (358)
488 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 97.2 0.00084 1.8E-08 58.6 6.4 56 217-273 5-64 (182)
489 PRK10218 GTP-binding protein; 97.2 0.00052 1.1E-08 70.8 5.7 58 218-275 6-81 (607)
490 KOG0075 GTP-binding ADP-ribosy 97.2 0.0049 1.1E-07 52.2 10.2 115 82-201 49-181 (186)
491 cd04133 Rop_like Rop subfamily 97.2 0.00073 1.6E-08 58.7 5.7 54 218-273 2-60 (176)
492 cd01875 RhoG RhoG subfamily. 97.1 0.0007 1.5E-08 59.2 5.4 56 217-273 3-62 (191)
493 KOG0093 GTPase Rab3, small G p 97.1 0.0013 2.9E-08 55.5 6.5 113 84-199 56-180 (193)
494 PF00025 Arf: ADP-ribosylation 97.1 0.00038 8.2E-09 60.2 3.5 56 216-273 13-69 (175)
495 KOG0090 Signal recognition par 97.1 0.0021 4.6E-08 57.5 8.0 113 46-162 35-160 (238)
496 cd01888 eIF2_gamma eIF2-gamma 97.1 0.0005 1.1E-08 60.9 4.2 23 218-240 1-23 (203)
497 smart00053 DYNc Dynamin, GTPas 97.1 0.0013 2.7E-08 60.4 6.7 70 219-288 28-151 (240)
498 TIGR03680 eif2g_arch translati 97.1 0.00046 1E-08 67.9 4.1 24 217-240 4-27 (406)
499 TIGR01394 TypA_BipA GTP-bindin 97.1 0.00069 1.5E-08 69.8 5.4 56 219-274 3-76 (594)
500 cd04103 Centaurin_gamma Centau 97.1 0.0012 2.5E-08 56.1 5.9 53 218-273 1-58 (158)
No 1
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=100.00 E-value=1.1e-41 Score=316.81 Aligned_cols=214 Identities=44% Similarity=0.765 Sum_probs=192.5
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHhcCceE
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKV 179 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~v 179 (316)
++||||||.+..+++.+.++++|+||+|+|+|.|.+..++.+.+++.++|+++|+||+||++..+...|.+++.+.+..+
T Consensus 1 ~~WfpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~v 80 (276)
T TIGR03596 1 IQWFPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRGNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKA 80 (276)
T ss_pred CccChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHCCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeE
Confidence 58999999999999999999999999999999999999999988888899999999999988776778888887666778
Q ss_pred EEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEE
Q 021210 180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR 259 (316)
Q Consensus 180 i~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~ 259 (316)
+++|++++.|+++|.+.+.++.+........++.....++++++|+||||||||||+|.+++.+.+++.||+|+..+++.
T Consensus 81 i~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~ 160 (276)
T TIGR03596 81 LAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIK 160 (276)
T ss_pred EEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEE
Confidence 99999999999999988887765443333344444567899999999999999999999999899999999999999999
Q ss_pred eCCcEEEEeCCCcccCCCCCHHHHHHHHhcccccccCcchHHHHHHHHHHHHcC
Q 021210 260 FGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARI 313 (316)
Q Consensus 260 ~~~~~~liDTPGi~~~~~~~~~~~~~La~~~~i~~~~~~~~~v~~~ll~~L~~~ 313 (316)
++.++.|+||||+..+...+.+.+.+|++++++.+..++..+++.++++.|.++
T Consensus 161 ~~~~~~l~DtPG~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~~~~~~~~~l~~~ 214 (276)
T TIGR03596 161 LSDGLELLDTPGILWPKFEDQEVGLKLAATGAIKDEALDLEDVALFLLEYLLEH 214 (276)
T ss_pred eCCCEEEEECCCcccCCCCchHHHHHHHHhCCcccccCChHHHHHHHHHHHHhh
Confidence 988999999999999999999999999999999999999999999999999774
No 2
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=100.00 E-value=1.5e-41 Score=317.79 Aligned_cols=215 Identities=44% Similarity=0.817 Sum_probs=192.7
Q ss_pred ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHhcCce
Q 021210 99 PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTK 178 (316)
Q Consensus 99 ~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~ 178 (316)
.++||||||.+..+++++.++++|+||+|+|+|.|.+.++..+.+++.++|+++|+||+||++....++|.+++.+.+..
T Consensus 3 ~~~wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~ 82 (287)
T PRK09563 3 KIQWFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIGNKPRLLILNKSDLADPEVTKKWIEYFEEQGIK 82 (287)
T ss_pred cCcCcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhCCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCe
Confidence 38999999999999999999999999999999999999999898888899999999999998776677888888766777
Q ss_pred EEEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEE
Q 021210 179 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV 258 (316)
Q Consensus 179 vi~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~ 258 (316)
++++|++++.|+++|.+.+..+.+....+...++.....++++++|+||||||||||+|.+++.+.+++.||+|++.+++
T Consensus 83 vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~ 162 (287)
T PRK09563 83 ALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWI 162 (287)
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEE
Confidence 89999999999999998888776544333333444456789999999999999999999999989999999999999999
Q ss_pred EeCCcEEEEeCCCcccCCCCCHHHHHHHHhcccccccCcchHHHHHHHHHHHHcC
Q 021210 259 RFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARI 313 (316)
Q Consensus 259 ~~~~~~~liDTPGi~~~~~~~~~~~~~La~~~~i~~~~~~~~~v~~~ll~~L~~~ 313 (316)
.++.+++|+||||+..+...+.+.+.+|+++++|.+..++..+++.++++.|+++
T Consensus 163 ~~~~~~~l~DtPGi~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~ll~~l~~~ 217 (287)
T PRK09563 163 KLGKGLELLDTPGILWPKLEDQEVGLKLALTGAIKDEALDLEEVAIFALEYLSKH 217 (287)
T ss_pred EeCCcEEEEECCCcCCCCCCcHHHHHHHHHhCCcchhhcChHHHHHHHHHHHHhh
Confidence 9988999999999999888888999999999999999999999999999999764
No 3
>COG1161 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=5.9e-38 Score=297.60 Aligned_cols=213 Identities=38% Similarity=0.714 Sum_probs=192.7
Q ss_pred cccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHhc-C
Q 021210 98 RPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ-G 176 (316)
Q Consensus 98 ~~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~-g 176 (316)
..++|+||||.++.+++.+.++.+|+|++|+|||+|.+++++.+.+++.+++.++|+||+||++....++|.+++.+. +
T Consensus 12 ~~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~ 91 (322)
T COG1161 12 NKIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKEKPKLLVLNKADLAPKEVTKKWKKYFKKEEG 91 (322)
T ss_pred ccccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHccCCcEEEEehhhcCCHHHHHHHHHHHHhcCC
Confidence 369999999999999999999999999999999999999999999999999999999999999999999999999887 5
Q ss_pred ceEEEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE
Q 021210 177 TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK 256 (316)
Q Consensus 177 ~~vi~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~ 256 (316)
...++++++.+.+...+...+..+......+...++......++++||+||||||||||+|.+++.+.+|+.||+|++.+
T Consensus 92 ~~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q 171 (322)
T COG1161 92 IKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQ 171 (322)
T ss_pred CccEEEEeecccCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceE
Confidence 77899999999998888866555543322333445555667899999999999999999999999999999999999999
Q ss_pred EEEeCCcEEEEeCCCcccCCCCC-HHHHHHHHhcccccccCcchHHHHHHHHHHH
Q 021210 257 WVRFGKDLEFLDSPGIIPMRISD-QAAAIKLAICDDIGERSYDVADVAAILVQML 310 (316)
Q Consensus 257 ~~~~~~~~~liDTPGi~~~~~~~-~~~~~~La~~~~i~~~~~~~~~v~~~ll~~L 310 (316)
++.+...++|+||||++++...+ ...+.+++.+++|++.+++...++..++.++
T Consensus 172 ~i~~~~~i~LlDtPGii~~~~~~~~~v~~~l~~~~~Ik~~~~~~~~v~~~~~~~~ 226 (322)
T COG1161 172 WIKLDDGIYLLDTPGIIPPKFDDDELVLLKLAPKGEIKDPVLPADEVAERLLGGL 226 (322)
T ss_pred EEEcCCCeEEecCCCcCCCCccchHHHhhccccccccCccccChHHHHHHHHhhh
Confidence 99999999999999999998888 8889999999999999999999999999888
No 4
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=100.00 E-value=4e-36 Score=276.18 Aligned_cols=221 Identities=31% Similarity=0.509 Sum_probs=181.4
Q ss_pred EEEeccccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHH
Q 021210 91 YYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWAT 170 (316)
Q Consensus 91 ~~~~~~~~~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~ 170 (316)
+.|..--.+..||||||.++.|.+++.+...|+||+|.|||.|++++++.+.+.+..++.|+|+||+||.+..+.....+
T Consensus 17 ~~~~~~~~~~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~~k~riiVlNK~DLad~~~~k~~iq 96 (335)
T KOG2485|consen 17 VIFAKYNMPRRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLPPKPRIIVLNKMDLADPKEQKKIIQ 96 (335)
T ss_pred ccccccCCccccCchHHHHHHHHHHhhcccccEEEEeeccccCCccccHHHHHhcCCCceEEEEecccccCchhhhHHHH
Confidence 34455556799999999999999999999999999999999999999999999999999999999999999777777777
Q ss_pred HHHhcCc-eEEEeccccccc--hhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhc-----Ccc
Q 021210 171 YFAKQGT-KVIFSNGQLGMG--TMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK-----RRM 242 (316)
Q Consensus 171 ~~~~~g~-~vi~iSa~~g~g--i~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~-----~~~ 242 (316)
+++..+. .++..++....+ +..+...+..+..+....-+ -.+...+++|+|.||||||||||++.. ++.
T Consensus 97 ~~~~~~~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l~r~ir---t~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~ 173 (335)
T KOG2485|consen 97 YLEWQNLESYIKLDCNKDCNKQVSPLLKILTILSEELVRFIR---TLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKA 173 (335)
T ss_pred HHHhhcccchhhhhhhhhhhhccccHHHHHHHHHHHHHHhhc---ccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccc
Confidence 7775543 345555554433 56666655555443322111 123457899999999999999999863 467
Q ss_pred cccCCCCCceeeEEE-EEe--CCcEEEEeCCCcccCCCCCHHHHHHHHhcccccccCcchHHHHHHHHHHHHcCC
Q 021210 243 CPAAPRPGVTRVLKW-VRF--GKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIP 314 (316)
Q Consensus 243 ~~vs~~pgtT~~~~~-~~~--~~~~~liDTPGi~~~~~~~~~~~~~La~~~~i~~~~~~~~~v~~~ll~~L~~~~ 314 (316)
+.|++.||+|+.++. +++ ...++++||||+..+++.+.+.+++||+||+.+++.++.+.+++|+++.|++|-
T Consensus 174 a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e~~lKLAL~g~Vkd~~V~~~~~adylL~~lN~~~ 248 (335)
T KOG2485|consen 174 ARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVEDGLKLALCGLVKDHLVGEETIADYLLYLLNSHS 248 (335)
T ss_pred eeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHHHhhhhhhcccccccccCHHHHHHHHHHHHhccC
Confidence 789999999999864 555 446899999999999999999999999999999999999999999999999874
No 5
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=100.00 E-value=1.5e-32 Score=237.99 Aligned_cols=171 Identities=47% Similarity=0.907 Sum_probs=144.6
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEE
Q 021210 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIF 181 (316)
Q Consensus 102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~ 181 (316)
||||||+++.+++++.+++||+|++|+|++.+....+..+...+.+++.++|+||+|+.+..+...|.+++...+..+++
T Consensus 1 ~~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~ 80 (171)
T cd01856 1 WFPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLF 80 (171)
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHhcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEE
Confidence 99999999999999999999999999999998877777777777788999999999998766556677777666677899
Q ss_pred eccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeC
Q 021210 182 SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG 261 (316)
Q Consensus 182 iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~ 261 (316)
+|++++.|+++|.+.+.......... +..+..+...+++++|.+|||||||+|+|.+...+.+++.||||++.+.+.++
T Consensus 81 iSa~~~~gi~~L~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~ 159 (171)
T cd01856 81 VNAKSGKGVKKLLKAAKKLLKDIEKL-KAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS 159 (171)
T ss_pred EECCCcccHHHHHHHHHHHHHHHhhh-hhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec
Confidence 99999999999998877754322211 12233445678999999999999999999998888999999999999988887
Q ss_pred CcEEEEeCCCcc
Q 021210 262 KDLEFLDSPGII 273 (316)
Q Consensus 262 ~~~~liDTPGi~ 273 (316)
.++.++||||+.
T Consensus 160 ~~~~~iDtpG~~ 171 (171)
T cd01856 160 PGIYLLDTPGIL 171 (171)
T ss_pred CCEEEEECCCCC
Confidence 789999999984
No 6
>KOG2484 consensus GTPase [General function prediction only]
Probab=100.00 E-value=6.3e-33 Score=261.62 Aligned_cols=287 Identities=29% Similarity=0.393 Sum_probs=205.4
Q ss_pred cccccccCCCCC-ccccc--ccccccccCCCCCeeEE---ecC-CCCCcCCC------------CCCCCCCCcchhhhhh
Q 021210 21 FVHCKSKTKPST-TSLAS--SASLSSSLSSSAPIIQT---VGG-KQSSWHGG------------NSNNSNGSIEAYEEEC 81 (316)
Q Consensus 21 ~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~------------~~~~~~~~~g~~~e~e 81 (316)
+.||+.+.+... ++... ....|...++.|+..+| +|. +....... ..+...+ +...++.
T Consensus 26 ~~h~~k~~k~akk~~~~~s~~~kdp~ipns~p~k~~il~eve~~k~~~~e~re~rk~ark~e~~~~k~~~l--e~~~~~~ 103 (435)
T KOG2484|consen 26 REHHRKVRKYAKKNGAKKSRPRKDPGIPNSVPFKEQILPEVESKKMRIEEEREARKAARKEEAIERKKNGL--EANVDDK 103 (435)
T ss_pred HHhhhHhhhHhhhCcccccccccCCCCCCCCCChHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHhhhhhh--hhhhhHH
Confidence 456666666554 33333 36677888888888887 344 33322221 1110000 0011111
Q ss_pred cccc---CCcceEEEe-ccccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh----CCCCEEEE
Q 021210 82 DWAD---LDADLYYWT-KSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL----GNRKRILV 153 (316)
Q Consensus 82 ~~~~---~d~~~~~~~-~~~~~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l----~~k~~IlV 153 (316)
++.. .|.+...+. .......|++++...|.++++++++.+|+||+|+|||+|++++++++++++ ++|++|+|
T Consensus 104 ~~~~~~~~e~e~~~~~e~~~~~~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILV 183 (435)
T KOG2484|consen 104 DERIEPSPEEEEMLYAEEEYENALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILV 183 (435)
T ss_pred HHhcCCCcchHHHHHHHHHhhhhccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEE
Confidence 1111 244444443 456678899999999999999999999999999999999999999999987 46999999
Q ss_pred EEccCCCChHhHHHHHHHHHhcCceEEEeccccccch--hhhH--H-HHHHhhhhhhhhhcccCCCccceEEeEeccCCC
Q 021210 154 LNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGT--MKLS--R-LAKALASDVNVKRRSKGLLPRAVRAGIVGYPNV 228 (316)
Q Consensus 154 lNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi--~~L~--~-~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNv 228 (316)
+||+||++.+.+++|+.|+++.+..++|.++....+. ..+. . +-.+..-+........+..+..++++|||+|||
T Consensus 184 LNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast~~~~~~~~~~~~s~c~gae~l~~~lgny~~~~~lk~sIrvGViG~PNV 263 (435)
T KOG2484|consen 184 LNKIDLVPREVVEKWLVYLRREGPTVAFKASTQMQNSNSKNLQSSVCFGAETLMKVLGNYCRKGELKTSIRVGIIGYPNV 263 (435)
T ss_pred eehhccCCHHHHHHHHHHHHhhCCcceeecccccccccccccccchhhhHHHHHHHhcCcccccccCcceEeeeecCCCC
Confidence 9999999999999999999999988888766544332 1111 0 000011111112233445667899999999999
Q ss_pred CcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEEEeCCCcccCCCCCHHHHHHHHhcccccccCcchHHHHHHHHH
Q 021210 229 GKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQ 308 (316)
Q Consensus 229 GKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~~~~~~~~~~~~~La~~~~i~~~~~~~~~v~~~ll~ 308 (316)
||||+||+|..++.|.+++.||.|+.+++++++.++.|+|+||++.++..+.+ ++.|.-|..+....+++..+..+|-+
T Consensus 264 GKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk~i~llDsPgiv~~~~~~~~-~~~Lrn~~~i~~~~dp~~~v~~iL~~ 342 (435)
T KOG2484|consen 264 GKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDKKIRLLDSPGIVPPSIDEKD-ALALRNCIPIGKVADPVTPVSCILKR 342 (435)
T ss_pred ChhHHHHHHHHhccccCCCCccchhhhhheeccCCceeccCCceeecCCCccc-hhhhhcccccccccCccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999988887665 66677777777677777777776655
Q ss_pred HH
Q 021210 309 ML 310 (316)
Q Consensus 309 ~L 310 (316)
+.
T Consensus 343 ~~ 344 (435)
T KOG2484|consen 343 CS 344 (435)
T ss_pred hh
Confidence 44
No 7
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.97 E-value=3.5e-30 Score=219.88 Aligned_cols=151 Identities=31% Similarity=0.542 Sum_probs=128.0
Q ss_pred HHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC----CCCEEEEEEccCCCChHhHHHHHHHHHhcC-ceEEEecccccc
Q 021210 114 LKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQLGM 188 (316)
Q Consensus 114 l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~----~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g-~~vi~iSa~~g~ 188 (316)
+++.++++|+|++|+|+++|....+..+.+++. ++|+++|+||+|++++++...|.+++.+.. ..++++|++++.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccc
Confidence 577899999999999999998888888887775 389999999999998877777888876543 235789999999
Q ss_pred chhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEEEe
Q 021210 189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLD 268 (316)
Q Consensus 189 gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~liD 268 (316)
|+++|.+.+.++.... + .....+|+++|.||||||||||+|.+.+.+.+++.||+|++.+++.++.+++|+|
T Consensus 82 ~~~~L~~~l~~~~~~~---~-----~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liD 153 (157)
T cd01858 82 GKGSLIQLLRQFSKLH---S-----DKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLID 153 (157)
T ss_pred cHHHHHHHHHHHHhhh---c-----cccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEE
Confidence 9999988887764321 1 0124679999999999999999999999999999999999999999888899999
Q ss_pred CCCc
Q 021210 269 SPGI 272 (316)
Q Consensus 269 TPGi 272 (316)
|||+
T Consensus 154 tPGi 157 (157)
T cd01858 154 CPGV 157 (157)
T ss_pred CcCC
Confidence 9997
No 8
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.96 E-value=1e-29 Score=246.15 Aligned_cols=214 Identities=23% Similarity=0.357 Sum_probs=164.4
Q ss_pred CCCCCCCCcchhhhhhccccCCcceEEEeccccccc------ccc-chHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc
Q 021210 66 NSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQ------WYP-GHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH 138 (316)
Q Consensus 66 ~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~i~------~~P-gh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~ 138 (316)
.+..++.|+-....+++...-..++.-|.+.+...+ .+| .+..+++|+++.+++++|+|+.|||||+|+..+.
T Consensus 113 ~iPRRP~W~~~~s~eeLd~~EkeaFlewrr~L~~Lqe~e~l~lTpFErNLE~WRQLWRVlErSDivvqIVDARnPllfr~ 192 (562)
T KOG1424|consen 113 DIPRRPPWTLEMSKEELDRQEKEAFLEWRRKLASLQENEKLVLTPFERNLEIWRQLWRVLERSDIVVQIVDARNPLLFRS 192 (562)
T ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCeeechhhhCHHHHHHHHHHHhhcceEEEEeecCCccccCC
Confidence 466777787777777777766777777777766544 233 4567899999999999999999999999999999
Q ss_pred HHHHHHhC----CCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEecccc----ccc--hhhh----------HH---
Q 021210 139 PLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQL----GMG--TMKL----------SR--- 195 (316)
Q Consensus 139 ~~i~~~l~----~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~----g~g--i~~L----------~~--- 195 (316)
+.++.++. .|..++++||+||++..++.+|.+||.+.++.++|.||.. +++ +.+- ..
T Consensus 193 ~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~~at~~~~~~~~~e~~r~~d~~~~~~~~~~ 272 (562)
T KOG1424|consen 193 PDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSALAATEQLESKVLKEDRRSLDGVSRALGAIF 272 (562)
T ss_pred hhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEecccccccccccchhhhhhcccchhhhccccc
Confidence 99999976 4788999999999999999999999999999999999875 111 1110 00
Q ss_pred ------HHHHhhh---hhhhhhcc----------cC-CCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE
Q 021210 196 ------LAKALAS---DVNVKRRS----------KG-LLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL 255 (316)
Q Consensus 196 ------~L~~l~~---~~~~~r~~----------~~-~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~ 255 (316)
.+.+... ++..-... .+ ....-+.|++||||||||||+||+|.|.+...||..||-|+.+
T Consensus 273 ~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHF 352 (562)
T KOG1424|consen 273 VGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHF 352 (562)
T ss_pred cccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCccee
Confidence 0000000 00000000 00 0112488999999999999999999999999999999999999
Q ss_pred EEEEeCCcEEEEeCCCcccCCCCC
Q 021210 256 KWVRFGKDLEFLDSPGIIPMRISD 279 (316)
Q Consensus 256 ~~~~~~~~~~liDTPGi~~~~~~~ 279 (316)
|.+.+...+.|+||||+..+.+..
T Consensus 353 QTi~ls~~v~LCDCPGLVfPSf~~ 376 (562)
T KOG1424|consen 353 QTIFLSPSVCLCDCPGLVFPSFSP 376 (562)
T ss_pred EEEEcCCCceecCCCCccccCCCc
Confidence 999999999999999999777654
No 9
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.96 E-value=1.9e-29 Score=243.11 Aligned_cols=221 Identities=21% Similarity=0.257 Sum_probs=155.5
Q ss_pred hhhccccCCcceE--EEeccccccccccch--------HHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--
Q 021210 79 EECDWADLDADLY--YWTKSLRPVQWYPGH--------IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG-- 146 (316)
Q Consensus 79 e~e~~~~~d~~~~--~~~~~~~~i~~~Pgh--------~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~-- 146 (316)
++..+.|.|.-|. .|....-.+.++.|- ..+..++....+++||+||+|+|++.+++..+..++++|.
T Consensus 32 ~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~ 111 (444)
T COG1160 32 SDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRS 111 (444)
T ss_pred ecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 4445556665554 344332224555443 2345555666789999999999999999999999999986
Q ss_pred CCCEEEEEEccCCCChHhHHHHHHHHHhcC-ceEEEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEecc
Q 021210 147 NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGY 225 (316)
Q Consensus 147 ~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~ 225 (316)
++|+++|+||+|-...+ +....|.++| .+++++||.+|.|+.+|.+.+....+ ........+ ...+++|++||+
T Consensus 112 ~kpviLvvNK~D~~~~e---~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~-~~e~~~~~~-~~~~ikiaiiGr 186 (444)
T COG1160 112 KKPVILVVNKIDNLKAE---ELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP-PDEEEEEEE-ETDPIKIAIIGR 186 (444)
T ss_pred CCCEEEEEEcccCchhh---hhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC-Ccccccccc-cCCceEEEEEeC
Confidence 58999999999976332 2333466677 57899999999999999988777653 211111111 135799999999
Q ss_pred CCCCcchhHHhhhcCcccccCCCCCceeeEE---EEEeCCcEEEEeCCCcccC-CCCCHHHHHHHHhcccccccCcchHH
Q 021210 226 PNVGKSSLINRLLKRRMCPAAPRPGVTRVLK---WVRFGKDLEFLDSPGIIPM-RISDQAAAIKLAICDDIGERSYDVAD 301 (316)
Q Consensus 226 pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~---~~~~~~~~~liDTPGi~~~-~~~~~~~~~~La~~~~i~~~~~~~~~ 301 (316)
||||||||+|+|+++.++.+++.||||||.. +.+.++.+.++||+|++.. +.. +..++++...++ ++++.++
T Consensus 187 PNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~--e~~E~~Sv~rt~--~aI~~a~ 262 (444)
T COG1160 187 PNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKIT--ESVEKYSVARTL--KAIERAD 262 (444)
T ss_pred CCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccc--cceEEEeehhhH--hHHhhcC
Confidence 9999999999999999999999999999964 3334778999999999853 332 223344444444 3445555
Q ss_pred HHHHHHH
Q 021210 302 VAAILVQ 308 (316)
Q Consensus 302 v~~~ll~ 308 (316)
++.+++|
T Consensus 263 vvllviD 269 (444)
T COG1160 263 VVLLVID 269 (444)
T ss_pred EEEEEEE
Confidence 5544443
No 10
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.95 E-value=1.4e-27 Score=203.51 Aligned_cols=151 Identities=32% Similarity=0.512 Sum_probs=121.3
Q ss_pred CeEEEEEeCCCCCCCCcHHHH-HHh--CCCCEEEEEEccCCCChHhHHHHHHHHHhc-CceEEEeccccccchhhhHHHH
Q 021210 122 DVVIEVRDARIPLSTTHPLMD-QWL--GNRKRILVLNREDMISMADRNAWATYFAKQ-GTKVIFSNGQLGMGTMKLSRLA 197 (316)
Q Consensus 122 DlIl~VvDar~~~~~~~~~i~-~~l--~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~-g~~vi~iSa~~g~gi~~L~~~L 197 (316)
|++|+|+|+++|.+..+..+. ..+ .++|+++|+||+|+++.++..+|..++.+. +..++++|+++|.|+++|.+.+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i 80 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESAF 80 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHHHH
Confidence 899999999999888877776 343 378999999999999887777787666543 4668999999999999998876
Q ss_pred HHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEEEeCCCc
Q 021210 198 KALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGI 272 (316)
Q Consensus 198 ~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi 272 (316)
.+..........+++......+++++|.||||||||+|+|++...+.++..||||++.+++.++..+.|+|||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtPG~ 155 (155)
T cd01849 81 TKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLDNKIKLLDTPGI 155 (155)
T ss_pred HHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEecCCEEEEECCCC
Confidence 543211111112222234567899999999999999999999988899999999999999988888999999997
No 11
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.95 E-value=1.4e-27 Score=200.43 Aligned_cols=136 Identities=34% Similarity=0.617 Sum_probs=121.5
Q ss_pred HHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC----CCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEecccc
Q 021210 111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQL 186 (316)
Q Consensus 111 ~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~----~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~ 186 (316)
++++.+.++++|++++|+|++.|.+..+..+.+++. ++|+++|+||+||+++.+..+|.+++.+.+.+++++|+++
T Consensus 2 ~~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~ 81 (141)
T cd01857 2 WRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALK 81 (141)
T ss_pred HHHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecC
Confidence 467888999999999999999999888888888763 7899999999999987777788888888888899999987
Q ss_pred ccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEE
Q 021210 187 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEF 266 (316)
Q Consensus 187 g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~l 266 (316)
+.+ +++++|.||||||||+|+|++.....++..+|+|++.+.+.++.++.|
T Consensus 82 ~~~-----------------------------~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 132 (141)
T cd01857 82 ENA-----------------------------TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTPTITL 132 (141)
T ss_pred CCc-----------------------------EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCCCEEE
Confidence 754 389999999999999999999988889999999999999999888999
Q ss_pred EeCCCcccC
Q 021210 267 LDSPGIIPM 275 (316)
Q Consensus 267 iDTPGi~~~ 275 (316)
+|||||..+
T Consensus 133 ~DtpG~~~p 141 (141)
T cd01857 133 CDCPGLVFP 141 (141)
T ss_pred EECCCcCCC
Confidence 999999753
No 12
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.95 E-value=2.9e-27 Score=205.57 Aligned_cols=143 Identities=38% Similarity=0.661 Sum_probs=112.5
Q ss_pred CeEEEEEeCCCCCCCCcHHHHHH--h--CCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEeccccc----------
Q 021210 122 DVVIEVRDARIPLSTTHPLMDQW--L--GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLG---------- 187 (316)
Q Consensus 122 DlIl~VvDar~~~~~~~~~i~~~--l--~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g---------- 187 (316)
|+|++|+|+|.|.+..++.+.+. + .++|+|+|+||+||++++...+|.+++.+....+.+.|+...
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKSV 80 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhccc
Confidence 89999999999999999999888 3 368999999999999998889999999876544444443321
Q ss_pred ---------------cchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCce
Q 021210 188 ---------------MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 252 (316)
Q Consensus 188 ---------------~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT 252 (316)
.|.++|.+.++.+. .++....+++++++|+||||||||||+|++.+.+.+++.||+|
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T 152 (172)
T cd04178 81 KVEAASADLLRSSVCFGADCLLKLLKNYS--------RNKDIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVT 152 (172)
T ss_pred ccchhhhhhhhhccccCHHHHHHHHHHHh--------hccccccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeE
Confidence 11222222222211 1122344688999999999999999999999999999999999
Q ss_pred eeEEEEEeCCcEEEEeCCCc
Q 021210 253 RVLKWVRFGKDLEFLDSPGI 272 (316)
Q Consensus 253 ~~~~~~~~~~~~~liDTPGi 272 (316)
++.+++..+.++.|+||||+
T Consensus 153 ~~~~~~~~~~~~~l~DtPGi 172 (172)
T cd04178 153 KSMQEVHLDKKVKLLDSPGI 172 (172)
T ss_pred cceEEEEeCCCEEEEECcCC
Confidence 99999999888999999997
No 13
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=99.94 E-value=9.3e-27 Score=219.29 Aligned_cols=167 Identities=30% Similarity=0.517 Sum_probs=140.1
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC----CCCEEEEEEccCCCChHhHHHHHHHHHhcCc
Q 021210 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQGT 177 (316)
Q Consensus 102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~----~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~ 177 (316)
.--|...+.+.++.++++.+|+||.|+|||+|..+++..++++++ .|++|+|+|||||++......|...+.+...
T Consensus 195 f~kGQSkRIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyP 274 (572)
T KOG2423|consen 195 FSKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYP 274 (572)
T ss_pred HhccchhHHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCc
Confidence 345888899999999999999999999999999999999999987 5789999999999999999999998877654
Q ss_pred eEEEe-ccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE
Q 021210 178 KVIFS-NGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK 256 (316)
Q Consensus 178 ~vi~i-Sa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~ 256 (316)
.+.|- |-.+..|-..|.++|.++..-.. ....+.|+|||||||||||+||+|..++.|.|+++||-|+-.|
T Consensus 275 TiAfHAsi~nsfGKgalI~llRQf~kLh~--------dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQ 346 (572)
T KOG2423|consen 275 TIAFHASINNSFGKGALIQLLRQFAKLHS--------DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQ 346 (572)
T ss_pred ceeeehhhcCccchhHHHHHHHHHHhhcc--------CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHH
Confidence 33332 33444566677777777654221 1235679999999999999999999999999999999999988
Q ss_pred EEEeCCcEEEEeCCCcccCC
Q 021210 257 WVRFGKDLEFLDSPGIIPMR 276 (316)
Q Consensus 257 ~~~~~~~~~liDTPGi~~~~ 276 (316)
.+.+-+.++||||||+..+.
T Consensus 347 YItLmkrIfLIDcPGvVyps 366 (572)
T KOG2423|consen 347 YITLMKRIFLIDCPGVVYPS 366 (572)
T ss_pred HHHHHhceeEecCCCccCCC
Confidence 88888899999999998664
No 14
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.94 E-value=2e-25 Score=189.82 Aligned_cols=151 Identities=34% Similarity=0.549 Sum_probs=122.0
Q ss_pred HHHH-HHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEecccccc
Q 021210 112 KELK-DQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGM 188 (316)
Q Consensus 112 r~l~-~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g~ 188 (316)
+++. ..++++|++|+|+|++++....+..+..++ .++|+++|+||+|+.+..+...|..+....+.+++++||+++.
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~ 82 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERL 82 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccc
Confidence 3444 445669999999999998877777776654 3789999999999987655555554444455678999999999
Q ss_pred chhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEEEe
Q 021210 189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLD 268 (316)
Q Consensus 189 gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~liD 268 (316)
|+++|.+.+.++.+.. ....+++++|.+|||||||+|+|.+.....+++.+|+|+..+.+..+.++.++|
T Consensus 83 gi~~L~~~l~~~~~~~----------~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D 152 (156)
T cd01859 83 GTKILRRTIKELAKID----------GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLD 152 (156)
T ss_pred cHHHHHHHHHHHHhhc----------CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEE
Confidence 9999998887765421 134578999999999999999999888788999999999988888888899999
Q ss_pred CCCc
Q 021210 269 SPGI 272 (316)
Q Consensus 269 TPGi 272 (316)
|||+
T Consensus 153 tpGi 156 (156)
T cd01859 153 TPGV 156 (156)
T ss_pred CcCC
Confidence 9997
No 15
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.93 E-value=1e-25 Score=197.99 Aligned_cols=150 Identities=31% Similarity=0.384 Sum_probs=116.8
Q ss_pred HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHh----HHHHHH--HHHhcC---ceEE
Q 021210 110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMAD----RNAWAT--YFAKQG---TKVI 180 (316)
Q Consensus 110 ~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~----~~~~~~--~~~~~g---~~vi 180 (316)
+...+...++++|+|++|+|++++....+..+.....++|+++|+||+|+.+... ...|.+ .+...+ ..++
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 103 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVI 103 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEE
Confidence 3556667789999999999999887666666644445789999999999985432 223331 112223 2588
Q ss_pred EeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCc--------ccccCCCCCce
Q 021210 181 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR--------MCPAAPRPGVT 252 (316)
Q Consensus 181 ~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~--------~~~vs~~pgtT 252 (316)
++||++|.|+++|.+.+....+. ..+++++|.||||||||||+|++.. ...++..||||
T Consensus 104 ~vSA~~~~gi~eL~~~l~~~l~~-------------~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT 170 (190)
T cd01855 104 LISAKKGWGVEELINAIKKLAKK-------------GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTT 170 (190)
T ss_pred EEECCCCCCHHHHHHHHHHHhhc-------------CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCee
Confidence 99999999999998887765431 2368999999999999999999753 34678999999
Q ss_pred eeEEEEEeCCcEEEEeCCCc
Q 021210 253 RVLKWVRFGKDLEFLDSPGI 272 (316)
Q Consensus 253 ~~~~~~~~~~~~~liDTPGi 272 (316)
++.+.+.++.++.|+|||||
T Consensus 171 ~~~~~~~~~~~~~~~DtPG~ 190 (190)
T cd01855 171 LDLIKIPLGNGKKLYDTPGI 190 (190)
T ss_pred eeeEEEecCCCCEEEeCcCC
Confidence 99999998778999999997
No 16
>PRK13796 GTPase YqeH; Provisional
Probab=99.93 E-value=4.9e-26 Score=219.66 Aligned_cols=188 Identities=23% Similarity=0.323 Sum_probs=141.3
Q ss_pred HHHHHHHHhhcC-eEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCCh----HhHHHHHHHH-HhcCc---eEEE
Q 021210 111 EKELKDQLKLMD-VVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISM----ADRNAWATYF-AKQGT---KVIF 181 (316)
Q Consensus 111 ~r~l~~~i~~aD-lIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~----~~~~~~~~~~-~~~g~---~vi~ 181 (316)
.+++.+.+..+| +|++|+|+.+...+..+.+.++..++++++|+||+||.+. ++..+|.+.+ +..|+ ++++
T Consensus 59 ~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~ 138 (365)
T PRK13796 59 FLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVL 138 (365)
T ss_pred HHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEE
Confidence 344666666666 9999999999888888888888888999999999999864 2345565544 34454 5889
Q ss_pred eccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcC-----cccccCCCCCceeeEE
Q 021210 182 SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR-----RMCPAAPRPGVTRVLK 256 (316)
Q Consensus 182 iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~-----~~~~vs~~pgtT~~~~ 256 (316)
+||+++.|+++|.+.+.++.. ..++++||.||||||||||+|++. +...+|..||||++.+
T Consensus 139 vSAk~g~gI~eL~~~I~~~~~--------------~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~ 204 (365)
T PRK13796 139 ISAQKGHGIDELLEAIEKYRE--------------GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKI 204 (365)
T ss_pred EECCCCCCHHHHHHHHHHhcC--------------CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeE
Confidence 999999999999888766532 125899999999999999999854 3456899999999999
Q ss_pred EEEeCCcEEEEeCCCcccC-CCC---CHHHHHHHHhcccccccCcchHHHHHHHHHHHHc
Q 021210 257 WVRFGKDLEFLDSPGIIPM-RIS---DQAAAIKLAICDDIGERSYDVADVAAILVQMLAR 312 (316)
Q Consensus 257 ~~~~~~~~~liDTPGi~~~-~~~---~~~~~~~La~~~~i~~~~~~~~~v~~~ll~~L~~ 312 (316)
.+.++.+..|+|||||... .+. +.++...+...+.+++++|....-..+++..|.|
T Consensus 205 ~~~l~~~~~l~DTPGi~~~~~~~~~l~~~~l~~~~p~k~i~p~~~~l~~gq~l~~ggl~r 264 (365)
T PRK13796 205 EIPLDDGSFLYDTPGIIHRHQMAHYLSAKDLKIISPKKEIKPKTYQLNEEQTLFLGGLAR 264 (365)
T ss_pred EEEcCCCcEEEECCCccccchhhhcCCHHHHhhcCCCcccCceEEEECCCCEEEEeeEEE
Confidence 9999888899999999743 221 2344444555567777777665555555554443
No 17
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.92 E-value=4.1e-25 Score=212.92 Aligned_cols=154 Identities=26% Similarity=0.341 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChH----hHHHHHH-HHHhcCc---eE
Q 021210 108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA----DRNAWAT-YFAKQGT---KV 179 (316)
Q Consensus 108 ~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~----~~~~~~~-~~~~~g~---~v 179 (316)
.++.+.+......+|+|++|+|+.+...+..+++.+.+.++++++|+||+||+++. +..+|.+ ++++.|. ++
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i 130 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDI 130 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcE
Confidence 34555555666889999999999998888888998888889999999999998643 3445543 3455564 48
Q ss_pred EEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCc-----ccccCCCCCceee
Q 021210 180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR-----MCPAAPRPGVTRV 254 (316)
Q Consensus 180 i~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~-----~~~vs~~pgtT~~ 254 (316)
+++||++|.|+++|.+.+.++.. ..+++++|.||||||||||+|++.. .+.++..||||++
T Consensus 131 ~~vSAk~g~gv~eL~~~l~~~~~--------------~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~ 196 (360)
T TIGR03597 131 ILVSAKKGNGIDELLDKIKKARN--------------KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLD 196 (360)
T ss_pred EEecCCCCCCHHHHHHHHHHHhC--------------CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEee
Confidence 89999999999999888766532 1368999999999999999999753 4678999999999
Q ss_pred EEEEEeCCcEEEEeCCCcccC
Q 021210 255 LKWVRFGKDLEFLDSPGIIPM 275 (316)
Q Consensus 255 ~~~~~~~~~~~liDTPGi~~~ 275 (316)
.+.+.++.++.|+||||+...
T Consensus 197 ~~~~~~~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 197 LIEIPLDDGHSLYDTPGIINS 217 (360)
T ss_pred EEEEEeCCCCEEEECCCCCCh
Confidence 998888778899999999853
No 18
>PRK12289 GTPase RsgA; Reviewed
Probab=99.92 E-value=1.8e-24 Score=207.23 Aligned_cols=142 Identities=23% Similarity=0.321 Sum_probs=118.5
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEeccccccchh
Q 021210 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTM 191 (316)
Q Consensus 117 ~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~ 191 (316)
.++++|+|++|+|+.++... ...+.+++ .+.|+++|+||+||++..+...|.+.+...|+.++++||+++.|++
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~-~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI~ 164 (352)
T PRK12289 86 PVANADQILLVFALAEPPLD-PWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGLE 164 (352)
T ss_pred hhhcCCEEEEEEECCCCCCC-HHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCHH
Confidence 48999999999999865422 22444444 3789999999999998777778888888889999999999999998
Q ss_pred hhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCC-------ceeeEEEEEeCCcE
Q 021210 192 KLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKWVRFGKDL 264 (316)
Q Consensus 192 ~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pg-------tT~~~~~~~~~~~~ 264 (316)
+|.+.+.. + .++|+|.||||||||||+|++.....++.++| ||++.+++.+..+.
T Consensus 165 eL~~~L~~---k---------------i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~ 226 (352)
T PRK12289 165 ALLEQLRN---K---------------ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG 226 (352)
T ss_pred HHhhhhcc---c---------------eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc
Confidence 88766532 1 26999999999999999999988888888887 99999999986667
Q ss_pred EEEeCCCcccCCC
Q 021210 265 EFLDSPGIIPMRI 277 (316)
Q Consensus 265 ~liDTPGi~~~~~ 277 (316)
+|+|||||..+.+
T Consensus 227 ~liDTPG~~~~~l 239 (352)
T PRK12289 227 LLADTPGFNQPDL 239 (352)
T ss_pred EEEeCCCcccccc
Confidence 9999999997766
No 19
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.2e-24 Score=201.29 Aligned_cols=128 Identities=19% Similarity=0.297 Sum_probs=114.4
Q ss_pred CCCCCCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC---CCC
Q 021210 63 HGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL---STT 137 (316)
Q Consensus 63 ~~~~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~---~~~ 137 (316)
+.+.+|++++.||+++||||++|+|++||||++..|+ |+++||| ++|+|+|.+.++.||++|++||||.++ +.+
T Consensus 51 ~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~KRkFIiADTPGH-eQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrR 129 (431)
T COG2895 51 QGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEKRKFIIADTPGH-EQYTRNMATGASTADLAILLVDARKGVLEQTRR 129 (431)
T ss_pred CCCccchhhhhhhhHHHHhcCceEEEEeeecccccceEEEecCCcH-HHHhhhhhcccccccEEEEEEecchhhHHHhHH
Confidence 4478999999999999999999999999999999998 9999999 999999999999999999999999887 778
Q ss_pred cHHHHHHhCCCCEEEEEEccCCCChHh------HHHHHHHHHhcC---ceEEEeccccccchh
Q 021210 138 HPLMDQWLGNRKRILVLNREDMISMAD------RNAWATYFAKQG---TKVIFSNGQLGMGTM 191 (316)
Q Consensus 138 ~~~i~~~l~~k~~IlVlNK~DLv~~~~------~~~~~~~~~~~g---~~vi~iSa~~g~gi~ 191 (316)
|..|..+|+.+++++++|||||+++++ ..++..+..++| ..++|+||..|+|+.
T Consensus 130 Hs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 130 HSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHhCCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 999999999999999999999998764 233444445566 468999999999875
No 20
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.90 E-value=2e-23 Score=191.21 Aligned_cols=143 Identities=22% Similarity=0.285 Sum_probs=114.0
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCEEEEEEccCCCChHhH-HHHHHHHHhcCceEEEeccccccch
Q 021210 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADR-NAWATYFAKQGTKVIFSNGQLGMGT 190 (316)
Q Consensus 117 ~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~-~~~~~~~~~~g~~vi~iSa~~g~gi 190 (316)
.++++|.+++|+|+++|..+.+. +.+++ .+.++++|+||+||.+..+. .+|.+.+.+.|+.++.+||++|.|+
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~~-l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~gi 111 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLNQ-LDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGL 111 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHHH-HHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCchhH
Confidence 58899999999999987755432 44443 36899999999999865443 3677778778889999999999999
Q ss_pred hhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCC-------CceeeEEEEEeCCc
Q 021210 191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKWVRFGKD 263 (316)
Q Consensus 191 ~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p-------gtT~~~~~~~~~~~ 263 (316)
++|.+.+.. + .++++|.||||||||||+|++.....++.++ |||++.+++.+ .+
T Consensus 112 ~eLf~~l~~---~---------------~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~ 172 (245)
T TIGR00157 112 KELIEALQN---R---------------ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HG 172 (245)
T ss_pred HHHHhhhcC---C---------------EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CC
Confidence 888765432 1 3799999999999999999988766666543 59999999988 45
Q ss_pred EEEEeCCCcccCCCCC
Q 021210 264 LEFLDSPGIIPMRISD 279 (316)
Q Consensus 264 ~~liDTPGi~~~~~~~ 279 (316)
..|+|||||+...+.+
T Consensus 173 ~~liDtPG~~~~~l~~ 188 (245)
T TIGR00157 173 GLIADTPGFNEFGLWH 188 (245)
T ss_pred cEEEeCCCccccCCCC
Confidence 6899999999876654
No 21
>PRK12288 GTPase RsgA; Reviewed
Probab=99.88 E-value=4.8e-22 Score=190.40 Aligned_cols=145 Identities=24% Similarity=0.320 Sum_probs=113.9
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCEEEEEEccCCCChHh---HHHHHHHHHhcCceEEEecccc
Q 021210 115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQL 186 (316)
Q Consensus 115 ~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~---~~~~~~~~~~~g~~vi~iSa~~ 186 (316)
+-.++++|.+++|.+....++. ..+.+++ .+.+.++|+||+||++..+ ..+|.+.|.+.|++++++||++
T Consensus 115 q~iaANvD~vlIV~s~~p~~s~--~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~t 192 (347)
T PRK12288 115 KPIAANIDQIVIVSAVLPELSL--NIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHT 192 (347)
T ss_pred ceEEEEccEEEEEEeCCCCCCH--HHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 3357999999988886432222 2334443 2679999999999987542 4566777777889999999999
Q ss_pred ccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCC-------ceeeEEEEE
Q 021210 187 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKWVR 259 (316)
Q Consensus 187 g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pg-------tT~~~~~~~ 259 (316)
+.|+++|.+.+.. + .++|+|.||||||||||+|++.....++.+++ ||+..+++.
T Consensus 193 g~GideL~~~L~~---k---------------i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~ 254 (347)
T PRK12288 193 GEGLEELEAALTG---R---------------ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYH 254 (347)
T ss_pred CcCHHHHHHHHhh---C---------------CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEE
Confidence 9999998877542 1 26899999999999999999988888887764 899999999
Q ss_pred eCCcEEEEeCCCcccCCCCC
Q 021210 260 FGKDLEFLDSPGIIPMRISD 279 (316)
Q Consensus 260 ~~~~~~liDTPGi~~~~~~~ 279 (316)
++.+..|+|||||+...+.+
T Consensus 255 l~~~~~liDTPGir~~~l~~ 274 (347)
T PRK12288 255 FPHGGDLIDSPGVREFGLWH 274 (347)
T ss_pred ecCCCEEEECCCCCcccCCC
Confidence 97777899999999876643
No 22
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=2.4e-21 Score=190.25 Aligned_cols=170 Identities=25% Similarity=0.264 Sum_probs=130.2
Q ss_pred cccccch-------HHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHH
Q 021210 100 VQWYPGH-------IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWAT 170 (316)
Q Consensus 100 i~~~Pgh-------~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~ 170 (316)
+-++||+ ...+.+++...++.+|++++|+|++.+.+..+..+.+++. ++|+++|+||+|+.+.... ..
T Consensus 51 liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~---~~ 127 (429)
T TIGR03594 51 LIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAV---AA 127 (429)
T ss_pred EEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccccc---HH
Confidence 5667875 3556677778899999999999999988887777877775 7899999999998764431 12
Q ss_pred HHHhcCc-eEEEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCC
Q 021210 171 YFAKQGT-KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP 249 (316)
Q Consensus 171 ~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p 249 (316)
.+.++|. +++++||++|.|+.+|.+.+......... ........++++++|.+|+|||||+|+|++.....+++.|
T Consensus 128 ~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~---~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~ 204 (429)
T TIGR03594 128 EFYSLGFGEPIPISAEHGRGIGDLLDAILELLPEEEE---EEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIA 204 (429)
T ss_pred HHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCcccc---cccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCC
Confidence 2445664 78999999999999988877655432111 1111224589999999999999999999998888899999
Q ss_pred CceeeEEEEE---eCCcEEEEeCCCcccC
Q 021210 250 GVTRVLKWVR---FGKDLEFLDSPGIIPM 275 (316)
Q Consensus 250 gtT~~~~~~~---~~~~~~liDTPGi~~~ 275 (316)
|||++..... .+..+.++||||+...
T Consensus 205 gtt~~~~~~~~~~~~~~~~liDT~G~~~~ 233 (429)
T TIGR03594 205 GTTRDSIDIPFERNGKKYLLIDTAGIRRK 233 (429)
T ss_pred CceECcEeEEEEECCcEEEEEECCCcccc
Confidence 9999864332 2557899999999754
No 23
>PRK00098 GTPase RsgA; Reviewed
Probab=99.87 E-value=1e-21 Score=184.85 Aligned_cols=143 Identities=22% Similarity=0.285 Sum_probs=112.5
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCEEEEEEccCCC-ChHhHHHHHHHHHhcCceEEEeccccccc
Q 021210 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMI-SMADRNAWATYFAKQGTKVIFSNGQLGMG 189 (316)
Q Consensus 116 ~~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~IlVlNK~DLv-~~~~~~~~~~~~~~~g~~vi~iSa~~g~g 189 (316)
..++++|++++|+|+.++..... .+.+++ .+.|+++|+||+||. +.....+|.+.+.+.|++++++|++++.|
T Consensus 76 ~iaaniD~vllV~d~~~p~~~~~-~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~g 154 (298)
T PRK00098 76 LIAANVDQAVLVFAAKEPDFSTD-LLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEG 154 (298)
T ss_pred ceeecCCEEEEEEECCCCCCCHH-HHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence 35899999999999987654322 233332 268999999999997 34445567777777788999999999999
Q ss_pred hhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCC-------CceeeEEEEEeCC
Q 021210 190 TMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKWVRFGK 262 (316)
Q Consensus 190 i~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p-------gtT~~~~~~~~~~ 262 (316)
+++|.+.+. . -.++++|.+|||||||||+|++.....++.++ +||+..+++.++.
T Consensus 155 i~~L~~~l~---g---------------k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~ 216 (298)
T PRK00098 155 LDELKPLLA---G---------------KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG 216 (298)
T ss_pred HHHHHhhcc---C---------------ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC
Confidence 988876542 1 14799999999999999999988777776665 4999999988877
Q ss_pred cEEEEeCCCcccCCC
Q 021210 263 DLEFLDSPGIIPMRI 277 (316)
Q Consensus 263 ~~~liDTPGi~~~~~ 277 (316)
..+|+||||++...+
T Consensus 217 ~~~~~DtpG~~~~~~ 231 (298)
T PRK00098 217 GGLLIDTPGFSSFGL 231 (298)
T ss_pred CcEEEECCCcCccCC
Confidence 789999999996544
No 24
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=6.8e-21 Score=187.54 Aligned_cols=169 Identities=24% Similarity=0.223 Sum_probs=125.0
Q ss_pred cccccchHH-------HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHH
Q 021210 100 VQWYPGHIA-------KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~~-------~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~ 170 (316)
+.++||+.. ...++....+..+|++|+|+|++.+.+..+..+..++. ++|+++|+||+|+.+..+ .. .
T Consensus 53 liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~--~~-~ 129 (435)
T PRK00093 53 LIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEEA--DA-Y 129 (435)
T ss_pred EEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccchh--hH-H
Confidence 556777632 23344556789999999999999988777777777665 789999999999765321 12 2
Q ss_pred HHHhcCc-eEEEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCC
Q 021210 171 YFAKQGT-KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP 249 (316)
Q Consensus 171 ~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p 249 (316)
.+.+.|. +++++||++|.|+++|.+.+......... .......++|+++|.||+|||||+|+|++.....+++.|
T Consensus 130 ~~~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~~~~~~----~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~ 205 (435)
T PRK00093 130 EFYSLGLGEPYPISAEHGRGIGDLLDAILEELPEEEE----EDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIA 205 (435)
T ss_pred HHHhcCCCCCEEEEeeCCCCHHHHHHHHHhhCCcccc----ccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCC
Confidence 2345564 48999999999999988776653221110 001234689999999999999999999999888999999
Q ss_pred CceeeEEEEE---eCCcEEEEeCCCcccC
Q 021210 250 GVTRVLKWVR---FGKDLEFLDSPGIIPM 275 (316)
Q Consensus 250 gtT~~~~~~~---~~~~~~liDTPGi~~~ 275 (316)
|||++..... .+..+.++||||+...
T Consensus 206 gtt~~~~~~~~~~~~~~~~lvDT~G~~~~ 234 (435)
T PRK00093 206 GTTRDSIDTPFERDGQKYTLIDTAGIRRK 234 (435)
T ss_pred CceEEEEEEEEEECCeeEEEEECCCCCCC
Confidence 9999964332 2557899999999754
No 25
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.86 E-value=2.9e-21 Score=180.83 Aligned_cols=143 Identities=21% Similarity=0.251 Sum_probs=111.2
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEeccccccc
Q 021210 115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMG 189 (316)
Q Consensus 115 ~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g~g 189 (316)
+..++++|++++|+|++.+..+. ..+.+++ .++|+++|+||+||.+..+...|..++.+.|++++++|++++.|
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~-~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~g 151 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNP-RLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEG 151 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCH-HHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCcc
Confidence 34589999999999999876221 2334433 37899999999999876554556666666788999999999999
Q ss_pred hhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCC-------CCceeeEEEEEeCC
Q 021210 190 TMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR-------PGVTRVLKWVRFGK 262 (316)
Q Consensus 190 i~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~-------pgtT~~~~~~~~~~ 262 (316)
+++|...+.. -.++++|.+|||||||||+|++.....++.. .+||++.+.+.+..
T Consensus 152 i~~L~~~L~~------------------k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~ 213 (287)
T cd01854 152 LDELREYLKG------------------KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG 213 (287)
T ss_pred HHHHHhhhcc------------------ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC
Confidence 9888766432 1489999999999999999998765554433 45999999998876
Q ss_pred cEEEEeCCCcccCC
Q 021210 263 DLEFLDSPGIIPMR 276 (316)
Q Consensus 263 ~~~liDTPGi~~~~ 276 (316)
...|+||||+....
T Consensus 214 ~~~liDtPG~~~~~ 227 (287)
T cd01854 214 GGLLIDTPGFREFG 227 (287)
T ss_pred CCEEEECCCCCccC
Confidence 67899999997654
No 26
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=7.1e-21 Score=189.64 Aligned_cols=169 Identities=24% Similarity=0.219 Sum_probs=122.6
Q ss_pred cccccchH-------HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHH
Q 021210 100 VQWYPGHI-------AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~-------~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~ 170 (316)
+-++||+. ..+.++....+..+|++|+|+|++++.+..+..+..++. ++|+++|+||+|+..... +..+
T Consensus 90 l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~--~~~~ 167 (472)
T PRK03003 90 VVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEA--DAAA 167 (472)
T ss_pred EEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch--hhHH
Confidence 45678752 234555667789999999999999887766666666664 689999999999864321 1122
Q ss_pred HHHhcCc-eEEEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCC
Q 021210 171 YFAKQGT-KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP 249 (316)
Q Consensus 171 ~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p 249 (316)
+...|. .++++||++|.|+++|.+.+.....+... ........++|+++|.||||||||+|+|++.....+++.|
T Consensus 168 -~~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~~~~---~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~ 243 (472)
T PRK03003 168 -LWSLGLGEPHPVSALHGRGVGDLLDAVLAALPEVPR---VGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVA 243 (472)
T ss_pred -HHhcCCCCeEEEEcCCCCCcHHHHHHHHhhcccccc---cccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCC
Confidence 223442 46799999999999998776654322111 1111234689999999999999999999998877899999
Q ss_pred CceeeEEE--EEe-CCcEEEEeCCCccc
Q 021210 250 GVTRVLKW--VRF-GKDLEFLDSPGIIP 274 (316)
Q Consensus 250 gtT~~~~~--~~~-~~~~~liDTPGi~~ 274 (316)
|||++... +.. +..+.|+||||+..
T Consensus 244 gtT~d~~~~~~~~~~~~~~l~DTaG~~~ 271 (472)
T PRK03003 244 GTTVDPVDSLIELGGKTWRFVDTAGLRR 271 (472)
T ss_pred CccCCcceEEEEECCEEEEEEECCCccc
Confidence 99998532 222 55688999999863
No 27
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.84 E-value=5.2e-20 Score=191.67 Aligned_cols=171 Identities=25% Similarity=0.216 Sum_probs=124.1
Q ss_pred cccccchH-------HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHH
Q 021210 100 VQWYPGHI-------AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~-------~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~ 170 (316)
+-++||.. ..+.+++...++.+|++|+|+|++.++...+..+.+++. ++|+++|+||+|+...... ..
T Consensus 327 liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~---~~ 403 (712)
T PRK09518 327 LVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYD---AA 403 (712)
T ss_pred EEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhh---HH
Confidence 45667742 345666677889999999999999888777777777664 7899999999998653221 12
Q ss_pred HHHhcC-ceEEEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCC
Q 021210 171 YFAKQG-TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP 249 (316)
Q Consensus 171 ~~~~~g-~~vi~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p 249 (316)
.+..+| ..++++||++|.|+.+|.+.+......... ....-......+|+++|.||||||||+|+|++.+...+++.|
T Consensus 404 ~~~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~~~~-~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~ 482 (712)
T PRK09518 404 EFWKLGLGEPYPISAMHGRGVGDLLDEALDSLKVAEK-TSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLA 482 (712)
T ss_pred HHHHcCCCCeEEEECCCCCCchHHHHHHHHhcccccc-cccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCC
Confidence 233344 246899999999999998776654432110 000000123579999999999999999999999887889999
Q ss_pred CceeeEEE--E-EeCCcEEEEeCCCccc
Q 021210 250 GVTRVLKW--V-RFGKDLEFLDSPGIIP 274 (316)
Q Consensus 250 gtT~~~~~--~-~~~~~~~liDTPGi~~ 274 (316)
|||++... + .-+..+.|+||||+..
T Consensus 483 gtT~d~~~~~~~~~~~~~~liDTaG~~~ 510 (712)
T PRK09518 483 GTTRDPVDEIVEIDGEDWLFIDTAGIKR 510 (712)
T ss_pred CCCcCcceeEEEECCCEEEEEECCCccc
Confidence 99999642 2 2356788999999964
No 28
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=9.2e-20 Score=169.23 Aligned_cols=141 Identities=24% Similarity=0.321 Sum_probs=111.2
Q ss_pred HhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCEEEEEEccCCCChHhHH--HHHHHHHhcCceEEEeccccccch
Q 021210 118 LKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRN--AWATYFAKQGTKVIFSNGQLGMGT 190 (316)
Q Consensus 118 i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~--~~~~~~~~~g~~vi~iSa~~g~gi 190 (316)
+.+.|-+++|+-+-.|..+.. .+.++| .+...++++||+||++..+.. ++...+...|+.++++|+++++|+
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~-~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~ 155 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTN-LLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGL 155 (301)
T ss_pred ccccceEEEEEeccCCCCCHH-HHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccH
Confidence 455888888888877754432 344443 366778899999999876644 567778889999999999999999
Q ss_pred hhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCC-------CCceeeEEEEEeCCc
Q 021210 191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR-------PGVTRVLKWVRFGKD 263 (316)
Q Consensus 191 ~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~-------pgtT~~~~~~~~~~~ 263 (316)
++|.+.++ .+ ..+++|.+|||||||||+|.+.....++.+ -|||+...++.++.+
T Consensus 156 ~~l~~~l~---~~---------------~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g 217 (301)
T COG1162 156 EELAELLA---GK---------------ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG 217 (301)
T ss_pred HHHHHHhc---CC---------------eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC
Confidence 88877643 22 268999999999999999998665555443 369999999999877
Q ss_pred EEEEeCCCcccCCC
Q 021210 264 LEFLDSPGIIPMRI 277 (316)
Q Consensus 264 ~~liDTPGi~~~~~ 277 (316)
-+|+|||||....+
T Consensus 218 G~iiDTPGf~~~~l 231 (301)
T COG1162 218 GWIIDTPGFRSLGL 231 (301)
T ss_pred CEEEeCCCCCccCc
Confidence 89999999998776
No 29
>PRK01889 GTPase RsgA; Reviewed
Probab=99.73 E-value=1.7e-17 Score=159.84 Aligned_cols=145 Identities=19% Similarity=0.256 Sum_probs=105.0
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCEEEEEEccCCCChHh-HHHHHHHHHhcCceEEEeccccccch
Q 021210 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNGQLGMGT 190 (316)
Q Consensus 117 ~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~-~~~~~~~~~~~g~~vi~iSa~~g~gi 190 (316)
.++++|.+++|+++..++.. ..+.+++ .+.+.++|+||+||++..+ ..++...+ ..|++++++|++++.|+
T Consensus 109 iaANvD~vliV~s~~p~~~~--~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~-~~g~~Vi~vSa~~g~gl 185 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNL--RRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL-APGVPVLAVSALDGEGL 185 (356)
T ss_pred EEEeCCEEEEEEecCCCCCh--hHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh-CCCCcEEEEECCCCccH
Confidence 37899999999999633322 2444443 3678899999999987532 22233333 45788999999999999
Q ss_pred hhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCC-------CCceeeEEEEEeCCc
Q 021210 191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR-------PGVTRVLKWVRFGKD 263 (316)
Q Consensus 191 ~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~-------pgtT~~~~~~~~~~~ 263 (316)
++|...+.. .-+++++|.+|+|||||+|.|.+.....++.+ .++|+..+++.+..+
T Consensus 186 ~~L~~~L~~-----------------g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~ 248 (356)
T PRK01889 186 DVLAAWLSG-----------------GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSG 248 (356)
T ss_pred HHHHHHhhc-----------------CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCC
Confidence 888776531 12489999999999999999998665554432 347777777787767
Q ss_pred EEEEeCCCcccCCCCCHH
Q 021210 264 LEFLDSPGIIPMRISDQA 281 (316)
Q Consensus 264 ~~liDTPGi~~~~~~~~~ 281 (316)
..++||||+....+.+.+
T Consensus 249 ~~l~DtpG~~~~~l~~~~ 266 (356)
T PRK01889 249 GLLIDTPGMRELQLWDAE 266 (356)
T ss_pred CeecCCCchhhhcccCch
Confidence 789999999876665543
No 30
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.65 E-value=3.2e-16 Score=134.33 Aligned_cols=96 Identities=25% Similarity=0.320 Sum_probs=71.2
Q ss_pred HHHHHHHHhcCceEEEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCccccc
Q 021210 166 NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPA 245 (316)
Q Consensus 166 ~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~v 245 (316)
++|.+.|++.|++++.+|+++++|+++|++.++. + .++++|.+|||||||||+|++.....+
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~---k---------------~~vl~G~SGvGKSSLiN~L~~~~~~~t 63 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKG---K---------------TSVLLGQSGVGKSSLINALLPEAKQKT 63 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTT---S---------------EEEEECSTTSSHHHHHHHHHTSS----
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcC---C---------------EEEEECCCCCCHHHHHHHHHhhcchhh
Confidence 4678889999999999999999999988876433 1 379999999999999999998865555
Q ss_pred CCC-------CCceeeEEEEEeCCcEEEEeCCCcccCCCCC
Q 021210 246 APR-------PGVTRVLKWVRFGKDLEFLDSPGIIPMRISD 279 (316)
Q Consensus 246 s~~-------pgtT~~~~~~~~~~~~~liDTPGi~~~~~~~ 279 (316)
+.+ -+||+..+++.+..+..|||||||....+.+
T Consensus 64 ~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~~l~~ 104 (161)
T PF03193_consen 64 GEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSFGLWH 104 (161)
T ss_dssp S--------------SEEEEEETTSEEEECSHHHHT--GCC
T ss_pred hhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCcccccc
Confidence 432 3699999999998889999999999877663
No 31
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.49 E-value=3.7e-14 Score=121.21 Aligned_cols=66 Identities=33% Similarity=0.521 Sum_probs=49.7
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCcccCCCCCHHHHH
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRISDQAAAI 284 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~~~~~~~~~~~ 284 (316)
++|+++|.||||||||+|+|++.+ ..+++.||+|.+.....+ +..+.++||||+.+......++..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v 69 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERV 69 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHH
Confidence 479999999999999999999998 789999999999754332 567999999999876555555443
No 32
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.49 E-value=6.7e-14 Score=136.08 Aligned_cols=62 Identities=35% Similarity=0.485 Sum_probs=54.5
Q ss_pred CccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCcccC
Q 021210 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (316)
Q Consensus 214 ~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~~ 275 (316)
...+++++++|.||||||||+|+|++++++.|+++||||||+....+ |-.+.|+||+|++..
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet 278 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRET 278 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccC
Confidence 34578999999999999999999999999999999999999865443 557899999999953
No 33
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.42 E-value=4e-13 Score=125.46 Aligned_cols=71 Identities=28% Similarity=0.477 Sum_probs=57.6
Q ss_pred CccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCcccCCCCCHHHHHH
Q 021210 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRISDQAAAIK 285 (316)
Q Consensus 214 ~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~~~~~~~~~~~~ 285 (316)
.+...+|.+.|+||||||||+++|.+.+ ..++++|+||+++...++ +..+++|||||+++-.+++.++-.+
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~Ak-pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~ 238 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTAK-PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIER 238 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcCC-CccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHH
Confidence 3445689999999999999999999887 699999999999876655 3468999999999766655544444
No 34
>COG1159 Era GTPase [General function prediction only]
Probab=99.42 E-value=2e-13 Score=126.15 Aligned_cols=59 Identities=34% Similarity=0.591 Sum_probs=51.0
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE-EEEEe--CCcEEEEeCCCcccCCC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRF--GKDLEFLDSPGIIPMRI 277 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~-~~~~~--~~~~~liDTPGi~~~~~ 277 (316)
-|++||+||||||||+|+|.|.+.+.+|+.|.|||.. +.+.. +.++.++|||||..++.
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~ 69 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKH 69 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcch
Confidence 4899999999999999999999999999999999994 33333 45789999999997643
No 35
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.39 E-value=6.1e-14 Score=136.03 Aligned_cols=58 Identities=40% Similarity=0.611 Sum_probs=51.1
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE---EEeCCcEEEEeCCCcccCC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW---VRFGKDLEFLDSPGIIPMR 276 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~---~~~~~~~~liDTPGi~~~~ 276 (316)
.|++||+||||||||+|+|.+++.+.|++.||+|||... ...+..+.+|||+|+.+..
T Consensus 5 ~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~ 65 (444)
T COG1160 5 VVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGD 65 (444)
T ss_pred EEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCC
Confidence 599999999999999999999999999999999999643 3346779999999998544
No 36
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.2e-12 Score=127.50 Aligned_cols=60 Identities=37% Similarity=0.527 Sum_probs=53.2
Q ss_pred ccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCccc
Q 021210 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (316)
Q Consensus 215 ~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~ 274 (316)
..+++|+++|+||||||||+|+|.++.+..|++.||||||.....+ |..+.|+||+|++.
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe 328 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE 328 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEecccccc
Confidence 3468999999999999999999999999999999999999643333 66799999999997
No 37
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.34 E-value=1.4e-12 Score=105.13 Aligned_cols=59 Identities=37% Similarity=0.612 Sum_probs=49.7
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEE--Ee-CCcEEEEeCCCcccCCC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIPMRI 277 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~--~~-~~~~~liDTPGi~~~~~ 277 (316)
+|+++|.+|+|||||+|+|++.+...++..+++|+..... .. +..+.++||||+.+...
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~ 62 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGES 62 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccch
Confidence 5899999999999999999998888999999999998432 33 44678999999986543
No 38
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.34 E-value=1.4e-11 Score=107.82 Aligned_cols=129 Identities=22% Similarity=0.148 Sum_probs=96.1
Q ss_pred CCcchhhhhhccccCCcceEEEe--ccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC-
Q 021210 72 GSIEAYEEECDWADLDADLYYWT--KSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG- 146 (316)
Q Consensus 72 ~~~g~~~e~e~~~~~d~~~~~~~--~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~- 146 (316)
+.|....|++.+.+++.....+. ...+. +-++||| .++.+++...+..+|++|+|+|+..+......+....+.
T Consensus 42 ~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~-~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~ 120 (188)
T PF00009_consen 42 FLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH-EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRE 120 (188)
T ss_dssp HHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS-HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHH
T ss_pred cccccchhhhcccccccccccccccccccceeecccccc-cceeecccceecccccceeeeecccccccccccccccccc
Confidence 35666788888999999998877 44444 7789999 669999999999999999999999887655444444432
Q ss_pred -CCCEEEEEEccCCCChHh---HHHHHHHH-HhcC------ceEEEeccccccchhhhHHHHHHhh
Q 021210 147 -NRKRILVLNREDMISMAD---RNAWATYF-AKQG------TKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 147 -~k~~IlVlNK~DLv~~~~---~~~~~~~~-~~~g------~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
+.|+++|+||+|+..... .+++.+.+ +..+ .+++++||.+|.|+++|.+.+.++.
T Consensus 121 ~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 121 LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 678999999999983221 22233222 2221 4699999999999999998877653
No 39
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=7.9e-12 Score=119.92 Aligned_cols=125 Identities=20% Similarity=0.169 Sum_probs=102.4
Q ss_pred CCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCC----------C
Q 021210 67 SNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP----------L 134 (316)
Q Consensus 67 ~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~----------~ 134 (316)
+-++=..|-...|||.+.|+|.++..|.++... |-+.||| ..+.++|...+++||+.|+|+|++.+ .
T Consensus 54 f~fawvlD~tkeERerGvTi~~~~~~fet~k~~~tIiDaPGH-rdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQ 132 (428)
T COG5256 54 FKFAWVLDKTKEERERGVTIDVAHSKFETDKYNFTIIDAPGH-RDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQ 132 (428)
T ss_pred eEEEEEecCChhHHhcceEEEEEEEEeecCCceEEEeeCCch-HHHHHHhhcchhhccEEEEEEECCCCccccccccCCc
Confidence 456667888899999999999999999999884 8899998 89999999999999999999999876 3
Q ss_pred CCCcHHHHHHhCCCCEEEEEEccCCCChHh--HHH----HHHHHHhcC-----ceEEEeccccccchhh
Q 021210 135 STTHPLMDQWLGNRKRILVLNREDMISMAD--RNA----WATYFAKQG-----TKVIFSNGQLGMGTMK 192 (316)
Q Consensus 135 ~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~--~~~----~~~~~~~~g-----~~vi~iSa~~g~gi~~ 192 (316)
+.+|..+.+.++.+.+|+++||||+++.++ .++ .....+..| ..++|+|+..|+|+.+
T Consensus 133 trEH~~La~tlGi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 133 TREHAFLARTLGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred hhHHHHHHHhcCCceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 556778888889999999999999997543 111 222223344 4589999999999765
No 40
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.28 E-value=5e-12 Score=111.16 Aligned_cols=59 Identities=31% Similarity=0.543 Sum_probs=53.2
Q ss_pred eEEeEeccCCCCcchhHHhhhcCc-ccccCCCCCceeeEEEEEeCCcEEEEeCCCcccCC
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMR 276 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~-~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~~~~ 276 (316)
..|+|+|++|||||||||+|++++ .+.+|..||.|+.+..+.++..+.++|-||+--.+
T Consensus 25 ~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAk 84 (200)
T COG0218 25 PEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAK 84 (200)
T ss_pred cEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCccccc
Confidence 469999999999999999999965 58999999999999999998889999999996443
No 41
>COG2262 HflX GTPases [General function prediction only]
Probab=99.24 E-value=3.1e-12 Score=122.68 Aligned_cols=191 Identities=21% Similarity=0.227 Sum_probs=105.7
Q ss_pred CCCCcchhhhhhccc---cCCcceEEEeccccccccccchHHHHHHHHH-HHHhhcCeEEEEEeCCCCCCCCcHHHH--H
Q 021210 70 SNGSIEAYEEECDWA---DLDADLYYWTKSLRPVQWYPGHIAKTEKELK-DQLKLMDVVIEVRDARIPLSTTHPLMD--Q 143 (316)
Q Consensus 70 ~~~~~g~~~e~e~~~---~~d~~~~~~~~~~~~i~~~Pgh~~~~~r~l~-~~i~~aDlIl~VvDar~~~~~~~~~i~--~ 143 (316)
..|..|-++-+|... ..+++.++|.+.+.|.|.++ .++.+. +.+++..+||.++.-|...-....+++ +
T Consensus 49 p~~~iG~GK~eEi~~~v~~~~ad~VIf~~~LsP~Q~~N-----Le~~l~~kVIDRt~LILdIFa~RA~S~EgkLQVeLAq 123 (411)
T COG2262 49 PKTYIGSGKLEEIAEAVEETGADLVIFDHELSPSQLRN-----LEKELGVKVIDRTQLILDIFAQRARSREGKLQVELAQ 123 (411)
T ss_pred cceecCcchHHHHHHHHHhcCCCEEEECCcCCHHHHHH-----HHHHHCCEEEehHhHHHHHHHHHhccchhhhhhhHHh
Confidence 345567666666654 45778889998888766322 333332 345667777777765543222222221 1
Q ss_pred HhCCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEeccccccc--------------hhhhHHHHHHhhhhhhhhhc
Q 021210 144 WLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMG--------------TMKLSRLAKALASDVNVKRR 209 (316)
Q Consensus 144 ~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g~g--------------i~~L~~~L~~l~~~~~~~r~ 209 (316)
+--..|.+ ...| ..+.+.|..+ ...|-| +.+|++.++.+.......|+
T Consensus 124 L~Y~lpRl-------------~~~~-~~l~~~Gggi----G~rGpGE~~lE~drR~ir~rI~~i~~eLe~v~~~R~~~R~ 185 (411)
T COG2262 124 LRYELPRL-------------VGSG-SHLSRLGGGI----GFRGPGETQLETDRRRIRRRIAKLKRELENVEKAREPRRK 185 (411)
T ss_pred hhhhhhHh-------------Hhhh-hhcccccCCC----CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11011111 0001 1111111000 111222 22334444444333333333
Q ss_pred ccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe--CCcEEEEeCCCcccCCCCCHHHHHH
Q 021210 210 SKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF--GKDLEFLDSPGIIPMRISDQAAAIK 285 (316)
Q Consensus 210 ~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~--~~~~~liDTPGi~~~~~~~~~~~~~ 285 (316)
.+.. ..-..|+++||+|+|||||+|+|++.. ..+.+..++|.+... +.+ +..+.|.||.||+...+++..++++
T Consensus 186 ~R~~-~~~p~vaLvGYTNAGKSTL~N~LT~~~-~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFk 263 (411)
T COG2262 186 KRSR-SGIPLVALVGYTNAGKSTLFNALTGAD-VYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFK 263 (411)
T ss_pred hhcc-cCCCeEEEEeeccccHHHHHHHHhccC-eeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHH
Confidence 3221 223469999999999999999999765 577777787777433 333 4579999999999888878777777
No 42
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.23 E-value=4.5e-11 Score=118.54 Aligned_cols=125 Identities=18% Similarity=0.147 Sum_probs=95.5
Q ss_pred CCCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC---------
Q 021210 66 NSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL--------- 134 (316)
Q Consensus 66 ~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~--------- 134 (316)
.++++.+.|....|++.++|+|..+..|.+..+. +.+.||| .+|.+++...+..+|.+|+|+|+..+.
T Consensus 53 ~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh-~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~ 131 (447)
T PLN00043 53 SFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGH-RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDG 131 (447)
T ss_pred chhhhhhhcCCHhHHhcCceEEEEEEEecCCCEEEEEEECCCH-HHHHHHHHhhhhhccEEEEEEEcccCceecccCCCc
Confidence 4667788999999999999999999999887665 7799999 889999999999999999999998752
Q ss_pred -CCCcHHHHHHhCCCCEEEEEEccCCCCh----Hh----HHHHHHHHHhcC-----ceEEEeccccccchh
Q 021210 135 -STTHPLMDQWLGNRKRILVLNREDMISM----AD----RNAWATYFAKQG-----TKVIFSNGQLGMGTM 191 (316)
Q Consensus 135 -~~~~~~i~~~l~~k~~IlVlNK~DLv~~----~~----~~~~~~~~~~~g-----~~vi~iSa~~g~gi~ 191 (316)
+.++..+...++.+++|+++||+|+.+. .. .++..+++.+.| ..++++||.+|+|+.
T Consensus 132 qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 132 QTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI 202 (447)
T ss_pred hHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence 1122223333445567889999998732 11 233444555555 458999999999975
No 43
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.20 E-value=1.4e-10 Score=115.89 Aligned_cols=128 Identities=15% Similarity=0.180 Sum_probs=98.0
Q ss_pred CCCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC---CcHH
Q 021210 66 NSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST---THPL 140 (316)
Q Consensus 66 ~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~---~~~~ 140 (316)
..+++.+.|....|++.++|+|..+.+|...... +-++||| .++.+++...+..+|++++|+|+..+... .+..
T Consensus 75 ~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~~~i~~iDTPGh-~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~ 153 (474)
T PRK05124 75 KLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGH-EQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF 153 (474)
T ss_pred ccchhhhccCChHHhhcCCCeEeeEEEeccCCcEEEEEECCCc-HHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH
Confidence 3567889999999999999999999888776554 7789998 67888899899999999999999987643 4445
Q ss_pred HHHHhCCCCEEEEEEccCCCChHh--HHHHHHH----HHhcC----ceEEEeccccccchhhhH
Q 021210 141 MDQWLGNRKRILVLNREDMISMAD--RNAWATY----FAKQG----TKVIFSNGQLGMGTMKLS 194 (316)
Q Consensus 141 i~~~l~~k~~IlVlNK~DLv~~~~--~~~~~~~----~~~~g----~~vi~iSa~~g~gi~~L~ 194 (316)
+...++.+++|+++||+|+++..+ .++..+. +...+ .+++++||++|.|+.++.
T Consensus 154 l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 154 IATLLGIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred HHHHhCCCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 556666678899999999985322 2222222 22222 578999999999987643
No 44
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.19 E-value=1.7e-10 Score=113.25 Aligned_cols=125 Identities=17% Similarity=0.227 Sum_probs=95.3
Q ss_pred CCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc---HHH
Q 021210 67 SNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH---PLM 141 (316)
Q Consensus 67 ~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~---~~i 141 (316)
+.++.+.|-...|++.+.|+|..+.+|....+. +-++||| .++.+++...+..+|++|+|+|+..+..... ..+
T Consensus 49 ~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~~~liDtPGh-~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~ 127 (406)
T TIGR02034 49 IDLALLVDGLQAEREQGITIDVAYRYFSTDKRKFIVADTPGH-EQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYI 127 (406)
T ss_pred eeeeeeccCChHHhcCCcCeEeeeEEEccCCeEEEEEeCCCH-HHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHH
Confidence 556778899999999999999999998776554 7789999 7788899999999999999999998775443 344
Q ss_pred HHHhCCCCEEEEEEccCCCChHh--HH----HHHHHHHhcC---ceEEEeccccccchhh
Q 021210 142 DQWLGNRKRILVLNREDMISMAD--RN----AWATYFAKQG---TKVIFSNGQLGMGTMK 192 (316)
Q Consensus 142 ~~~l~~k~~IlVlNK~DLv~~~~--~~----~~~~~~~~~g---~~vi~iSa~~g~gi~~ 192 (316)
...++.+++++++||+|+.+..+ .+ ++.+++.+.+ .+++++||++|+|+++
T Consensus 128 ~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 128 ASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHcCCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 44555667899999999985322 11 2222233334 3589999999999875
No 45
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.17 E-value=5e-11 Score=105.17 Aligned_cols=59 Identities=25% Similarity=0.402 Sum_probs=47.8
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCC-CCCceeeEEEEE---eCCcEEEEeCCCcccCCC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAP-RPGVTRVLKWVR---FGKDLEFLDSPGIIPMRI 277 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~-~pgtT~~~~~~~---~~~~~~liDTPGi~~~~~ 277 (316)
+|+++|.||+|||||+|+|++++...++. .+++|++.+... .+..+.++||||+.....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~ 64 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSV 64 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccC
Confidence 68999999999999999999988766654 468888865443 256799999999987643
No 46
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.16 E-value=2.3e-10 Score=102.02 Aligned_cols=130 Identities=18% Similarity=0.191 Sum_probs=94.1
Q ss_pred cCCCCCCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH
Q 021210 62 WHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP 139 (316)
Q Consensus 62 ~~~~~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~ 139 (316)
..++.++.+.++|....|++.+.|+|.....|...-++ +-++||| .++.+.+...+..+|++|+|+|+..+......
T Consensus 41 ~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~liDTpG~-~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~ 119 (208)
T cd04166 41 TGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFIIADTPGH-EQYTRNMVTGASTADLAILLVDARKGVLEQTR 119 (208)
T ss_pred cCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEEEEECCcH-HHHHHHHHHhhhhCCEEEEEEECCCCccHhHH
Confidence 34456677788999999999999999999888666554 7789999 66777788889999999999999987644333
Q ss_pred HHHHH---hCCCCEEEEEEccCCCChHh--H----HHHHHHHHhcC---ceEEEeccccccchhh
Q 021210 140 LMDQW---LGNRKRILVLNREDMISMAD--R----NAWATYFAKQG---TKVIFSNGQLGMGTMK 192 (316)
Q Consensus 140 ~i~~~---l~~k~~IlVlNK~DLv~~~~--~----~~~~~~~~~~g---~~vi~iSa~~g~gi~~ 192 (316)
....+ ...+++|+|+||+|+....+ . .+..+.+...+ .+++++||++|.|+.+
T Consensus 120 ~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 120 RHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 33222 22345788999999975321 1 12222333444 3489999999999865
No 47
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.16 E-value=5.4e-11 Score=110.40 Aligned_cols=57 Identities=32% Similarity=0.537 Sum_probs=47.9
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE-EEEe--CCcEEEEeCCCcccC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK-WVRF--GKDLEFLDSPGIIPM 275 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~-~~~~--~~~~~liDTPGi~~~ 275 (316)
+|+++|+||||||||+|+|++.+...+++.|+||++.. .+.. +..+.++||||+...
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~ 61 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEK 61 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCC
Confidence 58999999999999999999999888999999999843 2222 345889999999754
No 48
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.16 E-value=9.9e-11 Score=112.74 Aligned_cols=184 Identities=20% Similarity=0.231 Sum_probs=102.0
Q ss_pred CCCCcchhhhhhccc---cCCcceEEEeccccccccccchHHHHHHHHH-HHHhhcCeEEEEEeCCCCCCCCcHHHHHH-
Q 021210 70 SNGSIEAYEEECDWA---DLDADLYYWTKSLRPVQWYPGHIAKTEKELK-DQLKLMDVVIEVRDARIPLSTTHPLMDQW- 144 (316)
Q Consensus 70 ~~~~~g~~~e~e~~~---~~d~~~~~~~~~~~~i~~~Pgh~~~~~r~l~-~~i~~aDlIl~VvDar~~~~~~~~~i~~~- 144 (316)
..+..|-++-+|... ..+++.++|.+.+.|.|. ....+.+. +.+++..+||.++..|........+++-.
T Consensus 46 ~~~~~g~gk~~e~~~~~~~~~~~~vi~~~~l~p~q~-----~nl~~~~~~~v~Dr~~lil~iF~~ra~t~e~klqv~la~ 120 (351)
T TIGR03156 46 PATYIGKGKVEEIAELVEELEADLVIFDHELSPSQE-----RNLEKALGCRVIDRTGLILDIFAQRARTHEGKLQVELAQ 120 (351)
T ss_pred CCeEecccHHHHHHHHHHhcCCCEEEECCCCCHHHH-----HHHHHHhCCcccchHHHHHHHHHHhccChHHHHHHHHHh
Confidence 445566677777665 568889999988877662 22333332 55788888888887776433323232221
Q ss_pred -hCCCCEEEEEEccCCCChHhHHHHHHHHHhcC--ceE-------EEecc-ccccchhhhHHHHHHhhhhhhhhhcccCC
Q 021210 145 -LGNRKRILVLNREDMISMADRNAWATYFAKQG--TKV-------IFSNG-QLGMGTMKLSRLAKALASDVNVKRRSKGL 213 (316)
Q Consensus 145 -l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g--~~v-------i~iSa-~~g~gi~~L~~~L~~l~~~~~~~r~~~~~ 213 (316)
-...|.+ ...|.. +.+++ +.+ +.++. .-..-+.+|++.++.+.......+..+ .
T Consensus 121 l~~~l~r~-------------~~~~~~-l~~~~~~i~~~g~gE~~~~~~~~~i~~ri~~l~~~L~~~~~~~~~~r~~r-~ 185 (351)
T TIGR03156 121 LKYLLPRL-------------VGGWTH-LSRQGGGIGTRGPGETQLETDRRLIRERIAQLKKELEKVEKQRERQRRRR-K 185 (351)
T ss_pred ccchhhhh-------------hhhHHH-HHhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-c
Confidence 1111211 111222 22211 111 00000 000012233333333332222112111 1
Q ss_pred CccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe--CCcEEEEeCCCccc
Q 021210 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF--GKDLEFLDSPGIIP 274 (316)
Q Consensus 214 ~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~--~~~~~liDTPGi~~ 274 (316)
.....+|+++|+||||||||+|+|++.. ..+++.+|+|++... +.+ +..+.|+||||+..
T Consensus 186 ~~~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~ 249 (351)
T TIGR03156 186 RADVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIR 249 (351)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccc
Confidence 1234789999999999999999999887 678889999998643 333 35789999999954
No 49
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.15 E-value=1.6e-10 Score=114.72 Aligned_cols=127 Identities=20% Similarity=0.209 Sum_probs=95.6
Q ss_pred CCCCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC--------
Q 021210 65 GNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-------- 134 (316)
Q Consensus 65 ~~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~-------- 134 (316)
+..+++.+.|....|++.+.++|..+..|...... +.+.||| .++.+++...+..+|++++|+|+..+.
T Consensus 52 ~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~i~lIDtPGh-~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~ 130 (446)
T PTZ00141 52 GSFKYAWVLDKLKAERERGITIDIALWKFETPKYYFTIIDAPGH-RDFIKNMITGTSQADVAILVVASTAGEFEAGISKD 130 (446)
T ss_pred cchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeEEEEEECCCh-HHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCC
Confidence 45667778999999999999999999888876554 7899999 789999999999999999999998764
Q ss_pred --CCCcHHHHHHhCCCCEEEEEEccC--CCCh--Hh----HHHHHHHHHhcC-----ceEEEeccccccchhh
Q 021210 135 --STTHPLMDQWLGNRKRILVLNRED--MISM--AD----RNAWATYFAKQG-----TKVIFSNGQLGMGTMK 192 (316)
Q Consensus 135 --~~~~~~i~~~l~~k~~IlVlNK~D--Lv~~--~~----~~~~~~~~~~~g-----~~vi~iSa~~g~gi~~ 192 (316)
+.++..+...++.+++|+++||+| +++. +. .++..+.+...| .+++++|+.+|+|+.+
T Consensus 131 ~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 131 GQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred ccHHHHHHHHHHcCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 223334444455566789999999 4332 22 223333444444 4589999999999864
No 50
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.15 E-value=4.9e-10 Score=99.34 Aligned_cols=119 Identities=18% Similarity=0.083 Sum_probs=87.8
Q ss_pred CCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--C
Q 021210 72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N 147 (316)
Q Consensus 72 ~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~ 147 (316)
..|-...|++.+.+++.....|...... +-++||| .++.+.+...+..+|++++|+|+..+.......+..++. +
T Consensus 39 ~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~-~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~ 117 (195)
T cd01884 39 EIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGH-ADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVG 117 (195)
T ss_pred cccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCH-HHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC
Confidence 3566678999999999988888765443 6789999 578888999999999999999999876655444444433 4
Q ss_pred CC-EEEEEEccCCCChHhHH-----HHHHHHHhcC-----ceEEEeccccccchh
Q 021210 148 RK-RILVLNREDMISMADRN-----AWATYFAKQG-----TKVIFSNGQLGMGTM 191 (316)
Q Consensus 148 k~-~IlVlNK~DLv~~~~~~-----~~~~~~~~~g-----~~vi~iSa~~g~gi~ 191 (316)
.| +|+++||+|+++..+.. +..+.+.+.| ..++++||++|.++.
T Consensus 118 ~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 118 VPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred CCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCC
Confidence 55 77999999997543322 2333344444 468999999998853
No 51
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.13 E-value=5e-10 Score=115.68 Aligned_cols=127 Identities=20% Similarity=0.223 Sum_probs=96.7
Q ss_pred CCCCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc---H
Q 021210 65 GNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH---P 139 (316)
Q Consensus 65 ~~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~---~ 139 (316)
+.++++.++|....|++.+.|+|..+..|...... +-++||| .++.+++...+..+|++++|+|+..+..... .
T Consensus 71 ~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~~~~liDtPG~-~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~ 149 (632)
T PRK05506 71 DEIDLALLVDGLAAEREQGITIDVAYRYFATPKRKFIVADTPGH-EQYTRNMVTGASTADLAIILVDARKGVLTQTRRHS 149 (632)
T ss_pred CcceeeeeccCCHHHHhCCcCceeeeeEEccCCceEEEEECCCh-HHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHH
Confidence 45778888999999999999999999888876554 7789999 6788889999999999999999988765443 3
Q ss_pred HHHHHhCCCCEEEEEEccCCCCh--HhHHHHH----HHHHhcC---ceEEEeccccccchhh
Q 021210 140 LMDQWLGNRKRILVLNREDMISM--ADRNAWA----TYFAKQG---TKVIFSNGQLGMGTMK 192 (316)
Q Consensus 140 ~i~~~l~~k~~IlVlNK~DLv~~--~~~~~~~----~~~~~~g---~~vi~iSa~~g~gi~~ 192 (316)
.+...++.+++++++||+|+++. +..++.. +++.+.+ ..++++||++|.|+.+
T Consensus 150 ~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 150 FIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHhCCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 34444555788999999999852 2222222 2223444 3589999999999874
No 52
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.13 E-value=1.3e-10 Score=106.94 Aligned_cols=63 Identities=27% Similarity=0.360 Sum_probs=52.9
Q ss_pred CccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCcccCC
Q 021210 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMR 276 (316)
Q Consensus 214 ~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~~~ 276 (316)
...+++|+++|.+|||||||+|+|++.....++..+++|+..+.+.. +..+.++||||+....
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~ 93 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESV 93 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcch
Confidence 34578999999999999999999999988888888888888765443 4568999999998653
No 53
>COG2262 HflX GTPases [General function prediction only]
Probab=99.08 E-value=5.5e-10 Score=107.35 Aligned_cols=149 Identities=21% Similarity=0.218 Sum_probs=104.8
Q ss_pred CCCCeeEEecCCCCCcCCCCCC-CCCCCcch-hhhhhccccCCcceE----------EEeccccccccccchHHHHHHHH
Q 021210 47 SSAPIIQTVGGKQSSWHGGNSN-NSNGSIEA-YEEECDWADLDADLY----------YWTKSLRPVQWYPGHIAKTEKEL 114 (316)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~-~~e~e~~~~~d~~~~----------~~~~~~~~i~~~Pgh~~~~~r~l 114 (316)
+.-|.|.++|-.-- |+.- +..+++.. ..++.++.|+|+..+ .++++..+|++.|.+...+++.+
T Consensus 190 ~~~p~vaLvGYTNA----GKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksT 265 (411)
T COG2262 190 SGIPLVALVGYTNA----GKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKST 265 (411)
T ss_pred cCCCeEEEEeeccc----cHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHH
Confidence 45578888885210 1111 22333333 457888888887654 45677889999999999999999
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCcHH----HHHHh--CCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEecccccc
Q 021210 115 KDQLKLMDVVIEVRDARIPLSTTHPL----MDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGM 188 (316)
Q Consensus 115 ~~~i~~aDlIl~VvDar~~~~~~~~~----i~~~l--~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g~ 188 (316)
.+.+..||++++|||+.+|....+.+ +..-+ ..+|.|+|+||+|++........ +.......+++||++|.
T Consensus 266 LEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~---~~~~~~~~v~iSA~~~~ 342 (411)
T COG2262 266 LEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEILAE---LERGSPNPVFISAKTGE 342 (411)
T ss_pred HHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhhhhh---hhhcCCCeEEEEeccCc
Confidence 99999999999999999984333222 11222 26899999999999876652221 22111258999999999
Q ss_pred chhhhHHHHHHhhh
Q 021210 189 GTMKLSRLAKALAS 202 (316)
Q Consensus 189 gi~~L~~~L~~l~~ 202 (316)
|++.|++.|.....
T Consensus 343 gl~~L~~~i~~~l~ 356 (411)
T COG2262 343 GLDLLRERIIELLS 356 (411)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999988877654
No 54
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.08 E-value=1.3e-10 Score=107.70 Aligned_cols=61 Identities=26% Similarity=0.522 Sum_probs=52.2
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCcccCC
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMR 276 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~~~ 276 (316)
..++|++||.||||||||.|.+.+.+.+.++..++|||.-..--+ ..++.++||||+....
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~ 134 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKK 134 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccc
Confidence 467899999999999999999999999999999999998544333 3468899999998653
No 55
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.08 E-value=4.2e-10 Score=110.91 Aligned_cols=125 Identities=15% Similarity=0.087 Sum_probs=92.1
Q ss_pred CCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCC--CCCCCcHH--
Q 021210 67 SNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARI--PLSTTHPL-- 140 (316)
Q Consensus 67 ~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~--~~~~~~~~-- 140 (316)
.+++.+.|....|++.+.|+|..+..|...... +-++||| .++.+++...+..+|++|+|+|+.+ +.......
T Consensus 53 ~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~i~liDtpG~-~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~ 131 (425)
T PRK12317 53 FKFAWVMDRLKEERERGVTIDLAHKKFETDKYYFTIVDCPGH-RDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHV 131 (425)
T ss_pred cchhhhhccCHhHhhcCccceeeeEEEecCCeEEEEEECCCc-ccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHH
Confidence 446677899999999999999999988776554 6789999 6788888888999999999999987 44333222
Q ss_pred -HHHHhCCCCEEEEEEccCCCChHh------HHHHHHHHHhcC-----ceEEEeccccccchhh
Q 021210 141 -MDQWLGNRKRILVLNREDMISMAD------RNAWATYFAKQG-----TKVIFSNGQLGMGTMK 192 (316)
Q Consensus 141 -i~~~l~~k~~IlVlNK~DLv~~~~------~~~~~~~~~~~g-----~~vi~iSa~~g~gi~~ 192 (316)
+...++.+++++++||+|+.+..+ .++..+.+...+ ..++++||++|.|+++
T Consensus 132 ~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 132 FLARTLGINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred HHHHHcCCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 222233457899999999985321 122333344444 3589999999999986
No 56
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.07 E-value=3.5e-10 Score=112.34 Aligned_cols=59 Identities=36% Similarity=0.486 Sum_probs=50.1
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEE--Ee-CCcEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~--~~-~~~~~liDTPGi~~ 274 (316)
.+++|+++|+||||||||+|+|++.+...+++.||||++.... .+ +..+.++||||+..
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~ 275 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRE 275 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCC
Confidence 4578999999999999999999998877899999999986432 33 45689999999974
No 57
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.07 E-value=6.4e-10 Score=109.73 Aligned_cols=126 Identities=15% Similarity=0.115 Sum_probs=93.8
Q ss_pred CCCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----
Q 021210 66 NSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH----- 138 (316)
Q Consensus 66 ~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~----- 138 (316)
...++.+.|....|++.+.|+|..+..|...... +-+.||| .++.+.+...+..+|++++|+|+.++.....
T Consensus 53 ~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~~i~iiDtpGh-~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~ 131 (426)
T TIGR00483 53 SFEFAWVMDRLKEERERGVTIDVAHWKFETDKYEVTIVDCPGH-RDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTRE 131 (426)
T ss_pred ccchhhhhccCHHHhhcCceEEEEEEEEccCCeEEEEEECCCH-HHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHH
Confidence 3556778899999999999999999988876554 6789998 6788888888999999999999988732211
Q ss_pred -HHHHHHhCCCCEEEEEEccCCCC--hHh----HHHHHHHHHhcC-----ceEEEeccccccchhh
Q 021210 139 -PLMDQWLGNRKRILVLNREDMIS--MAD----RNAWATYFAKQG-----TKVIFSNGQLGMGTMK 192 (316)
Q Consensus 139 -~~i~~~l~~k~~IlVlNK~DLv~--~~~----~~~~~~~~~~~g-----~~vi~iSa~~g~gi~~ 192 (316)
..+...+..+++++|+||+|+.+ .+. .+++.+++...+ ..++++||++|.|+.+
T Consensus 132 ~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 132 HAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHcCCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 12333344567899999999974 222 223334444444 4689999999999875
No 58
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.07 E-value=2.2e-09 Score=94.12 Aligned_cols=127 Identities=19% Similarity=0.177 Sum_probs=84.8
Q ss_pred CcchhhhhhccccCCcceEEEecc--------------cc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC
Q 021210 73 SIEAYEEECDWADLDADLYYWTKS--------------LR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST 136 (316)
Q Consensus 73 ~~g~~~e~e~~~~~d~~~~~~~~~--------------~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~ 136 (316)
.|....|++.+.|++.....+.-. .. .+-++||| ..+.+.+...+..+|.+++|+|++.+...
T Consensus 29 ~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~-~~~~~~~~~~~~~~d~vi~VvD~~~~~~~ 107 (192)
T cd01889 29 FDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGH-ASLIRTIIGGAQIIDLMLLVVDATKGIQT 107 (192)
T ss_pred hccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCc-HHHHHHHHHHHhhCCEEEEEEECCCCccH
Confidence 344455677777777766533322 11 26778999 56777777888899999999999876543
Q ss_pred CcHHHH--HHhCCCCEEEEEEccCCCChHhH----HHHHHHHH-------hcCceEEEeccccccchhhhHHHHHHh
Q 021210 137 THPLMD--QWLGNRKRILVLNREDMISMADR----NAWATYFA-------KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 137 ~~~~i~--~~l~~k~~IlVlNK~DLv~~~~~----~~~~~~~~-------~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
...... ....+.|+++|+||+|+....+. +++.+++. ..+.+++++||++|.|+++|++.+...
T Consensus 108 ~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~ 184 (192)
T cd01889 108 QTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNL 184 (192)
T ss_pred HHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhc
Confidence 322111 11236799999999999865432 22222221 124678999999999999988876653
No 59
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.06 E-value=2.2e-10 Score=111.77 Aligned_cols=57 Identities=28% Similarity=0.389 Sum_probs=47.7
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEE--eC--CcEEEEeCCCcccCC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--FG--KDLEFLDSPGIIPMR 276 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~--~~--~~~~liDTPGi~~~~ 276 (316)
.|+|||+||||||||+|+|.+.+ .+++++|+||+...... .+ ..+.++||||+....
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a 221 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGA 221 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccc
Confidence 59999999999999999999877 48999999999865433 23 358999999998543
No 60
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.05 E-value=9.7e-10 Score=112.95 Aligned_cols=128 Identities=18% Similarity=0.152 Sum_probs=92.6
Q ss_pred cchhhhhhccccCCcceEEEecccc---ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH---HHHHhCC
Q 021210 74 IEAYEEECDWADLDADLYYWTKSLR---PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL---MDQWLGN 147 (316)
Q Consensus 74 ~g~~~e~e~~~~~d~~~~~~~~~~~---~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~---i~~~l~~ 147 (316)
|....|.+.++|+|..+.+|...-. .+-+.||| .++.++|...+..+|++++|+|+..+......+ +...++.
T Consensus 26 dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh-e~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi 104 (614)
T PRK10512 26 DRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH-EKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGN 104 (614)
T ss_pred ccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH-HHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCC
Confidence 3344566678898888777754322 37799999 789999999999999999999999876543333 3333333
Q ss_pred CCEEEEEEccCCCChHhHH----HHHHHHHhcC---ceEEEeccccccchhhhHHHHHHhhh
Q 021210 148 RKRILVLNREDMISMADRN----AWATYFAKQG---TKVIFSNGQLGMGTMKLSRLAKALAS 202 (316)
Q Consensus 148 k~~IlVlNK~DLv~~~~~~----~~~~~~~~~g---~~vi~iSa~~g~gi~~L~~~L~~l~~ 202 (316)
.++++|+||+|+++.+..+ ++.+.+...+ .+++++||++|.|+++|.+.|..+..
T Consensus 105 ~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 105 PMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred CeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 4468999999998764432 2333343333 56899999999999999999887654
No 61
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.05 E-value=8.7e-10 Score=99.15 Aligned_cols=124 Identities=19% Similarity=0.156 Sum_probs=88.0
Q ss_pred CCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCC-------CC
Q 021210 67 SNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS-------TT 137 (316)
Q Consensus 67 ~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~-------~~ 137 (316)
++++-+.|-...|++.+.|+|.....|...-.+ +.++||| .++...+...+..+|++|+|+|+.++.. ..
T Consensus 46 ~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~liDtpG~-~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~ 124 (219)
T cd01883 46 FKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFTILDAPGH-RDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQ 124 (219)
T ss_pred hhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEEEEECCCh-HHHHHHHHHHhhhCCEEEEEEECCCCccccccccccc
Confidence 445567888899999999999999988765544 7789999 5677888888999999999999987421 11
Q ss_pred cH---HHHHHhCCCCEEEEEEccCCCC----hHhHHHHH----HHHHhcC-----ceEEEeccccccchh
Q 021210 138 HP---LMDQWLGNRKRILVLNREDMIS----MADRNAWA----TYFAKQG-----TKVIFSNGQLGMGTM 191 (316)
Q Consensus 138 ~~---~i~~~l~~k~~IlVlNK~DLv~----~~~~~~~~----~~~~~~g-----~~vi~iSa~~g~gi~ 191 (316)
.. .+...+..+|+++++||+|+.. ....++.. +.+...+ ..++++||++|.|++
T Consensus 125 ~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 125 TREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred hHHHHHHHHHcCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 11 1122233478899999999983 22222222 2344433 458999999999976
No 62
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.05 E-value=1.2e-09 Score=99.00 Aligned_cols=102 Identities=14% Similarity=-0.012 Sum_probs=77.6
Q ss_pred ccccccchHHHHHHHHHHHHh--hcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHH----
Q 021210 99 PVQWYPGHIAKTEKELKDQLK--LMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWAT---- 170 (316)
Q Consensus 99 ~i~~~Pgh~~~~~r~l~~~i~--~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~---- 170 (316)
.+.++||| .++.+.+...+. .+|++++|+|++.+....+..+..++. +.|+++|+||+|+++..+..+..+
T Consensus 87 ~liDtpG~-~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~~~l~~ 165 (224)
T cd04165 87 TFIDLAGH-ERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQETLKDLKR 165 (224)
T ss_pred EEEECCCc-HHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHHHHHHH
Confidence 37789999 778888887775 799999999999887766666655543 689999999999987655433333
Q ss_pred HHHhc--------------------------CceEEEeccccccchhhhHHHHHHhh
Q 021210 171 YFAKQ--------------------------GTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 171 ~~~~~--------------------------g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
.+... ..+++.+|+.+|+|++.|.++|..|.
T Consensus 166 ~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~lp 222 (224)
T cd04165 166 ILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLLP 222 (224)
T ss_pred HhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhcC
Confidence 22211 13678899999999999999987764
No 63
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.05 E-value=2e-09 Score=90.47 Aligned_cols=99 Identities=18% Similarity=0.204 Sum_probs=70.0
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH---HHHHhCCCCEEEEEEccCCCChHh----HHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL---MDQWLGNRKRILVLNREDMISMAD----RNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~---i~~~l~~k~~IlVlNK~DLv~~~~----~~~~~~~~ 172 (316)
+-++||+ .++.+.+...+..+|++++|+|++++....... +......+|+++|+||+|+.+... .+++.+.+
T Consensus 55 ~~DtpG~-~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~ 133 (164)
T cd04171 55 FIDVPGH-EKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELL 133 (164)
T ss_pred EEECCCh-HHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHH
Confidence 5578998 567777778889999999999998744322222 222233459999999999986532 23344444
Q ss_pred Hh---cCceEEEeccccccchhhhHHHHHH
Q 021210 173 AK---QGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 173 ~~---~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
.. .+.+++++||++|.|++++.+.+..
T Consensus 134 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 134 AGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 44 2467999999999999998877654
No 64
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.04 E-value=3.8e-10 Score=111.80 Aligned_cols=61 Identities=38% Similarity=0.478 Sum_probs=51.3
Q ss_pred ccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEE--e-CCcEEEEeCCCcccC
Q 021210 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIPM 275 (316)
Q Consensus 215 ~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~--~-~~~~~liDTPGi~~~ 275 (316)
..+++|+++|.||||||||+|+|++.....+++.||||++..... + +..+.++||||+...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~ 264 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREH 264 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccc
Confidence 456899999999999999999999988788999999999965332 2 446889999999753
No 65
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.03 E-value=1.7e-09 Score=107.49 Aligned_cols=99 Identities=14% Similarity=0.138 Sum_probs=76.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCC-C---CCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHH----HH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP-L---STTHPLMDQWLGNRKRILVLNREDMISMADRNAWA----TY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~-~---~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~----~~ 171 (316)
+.+.||| .++.++|...+..+|++++|+|+..+ . +.++..+...++.+++|+|+||+|+++.+...+.. ++
T Consensus 121 ~IDtPGH-~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~~~ei~~~ 199 (460)
T PTZ00327 121 FVDCPGH-DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQYEEIRNF 199 (460)
T ss_pred eeeCCCH-HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHHHHHHHHH
Confidence 7789999 78999999999999999999999875 2 33444555556677899999999999765433322 22
Q ss_pred HHh---cCceEEEeccccccchhhhHHHHHH
Q 021210 172 FAK---QGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 172 ~~~---~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
+.. ...+++++||++|.|++.|++.|.+
T Consensus 200 l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~ 230 (460)
T PTZ00327 200 VKGTIADNAPIIPISAQLKYNIDVVLEYICT 230 (460)
T ss_pred HHhhccCCCeEEEeeCCCCCCHHHHHHHHHh
Confidence 222 2467999999999999999998885
No 66
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.02 E-value=1.5e-09 Score=111.06 Aligned_cols=128 Identities=20% Similarity=0.192 Sum_probs=91.0
Q ss_pred hhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC---cHHHHHHhCCCCEE
Q 021210 77 YEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT---HPLMDQWLGNRKRI 151 (316)
Q Consensus 77 ~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~---~~~i~~~l~~k~~I 151 (316)
..|.+.++|+|..+.+|...-.. +-+.||| .++.+++...+..+|++++|+|+.++.... +..+...++.++++
T Consensus 29 ~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh-e~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iI 107 (581)
T TIGR00475 29 PEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH-EKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTI 107 (581)
T ss_pred hhHhcCCceEEeEEEEEEeCCEEEEEEECCCH-HHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEE
Confidence 34566788888877666554333 6789999 789999999999999999999999865332 22233333333499
Q ss_pred EEEEccCCCChHhHH----HHHHHHHhc----CceEEEeccccccchhhhHHHHHHhhhhhh
Q 021210 152 LVLNREDMISMADRN----AWATYFAKQ----GTKVIFSNGQLGMGTMKLSRLAKALASDVN 205 (316)
Q Consensus 152 lVlNK~DLv~~~~~~----~~~~~~~~~----g~~vi~iSa~~g~gi~~L~~~L~~l~~~~~ 205 (316)
+|+||+|+++.+..+ +..+.+... +.+++++|+++|.|++++.+.+..+.....
T Consensus 108 VVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~ 169 (581)
T TIGR00475 108 VVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESLD 169 (581)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCC
Confidence 999999998765322 222223332 367899999999999999988877765443
No 67
>PRK11058 GTPase HflX; Provisional
Probab=99.02 E-value=6.4e-10 Score=109.67 Aligned_cols=56 Identities=30% Similarity=0.406 Sum_probs=45.8
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-C-CcEEEEeCCCccc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-G-KDLEFLDSPGIIP 274 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~-~~~~liDTPGi~~ 274 (316)
.+|+++|+||||||||+|+|++.+.. +++.||+|++... +.+ + ..+.++||||+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r 257 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIR 257 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCcccc
Confidence 47999999999999999999988754 8889999998643 333 2 3678999999954
No 68
>PTZ00258 GTP-binding protein; Provisional
Probab=99.02 E-value=3.2e-10 Score=110.15 Aligned_cols=58 Identities=36% Similarity=0.497 Sum_probs=47.5
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe--------------------CCcEEEEeCCCcccC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--------------------GKDLEFLDSPGIIPM 275 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~--------------------~~~~~liDTPGi~~~ 275 (316)
.++|++||+||||||||+|+|.+.+ ..++++||||++.....+ +..+.++||||+...
T Consensus 21 ~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 21 NLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 5689999999999999999998776 699999999988543221 124899999999854
No 69
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.02 E-value=3.1e-10 Score=109.19 Aligned_cols=57 Identities=40% Similarity=0.541 Sum_probs=47.5
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEeC------------------CcEEEEeCCCcccC
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG------------------KDLEFLDSPGIIPM 275 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~~------------------~~~~liDTPGi~~~ 275 (316)
++|++||+||||||||+|+|++.+ ..++++||||++... +.+. ..+.++||||+...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~ 79 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKG 79 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCC
Confidence 579999999999999999999988 799999999988542 2222 24899999999864
No 70
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.00 E-value=7.5e-10 Score=104.21 Aligned_cols=60 Identities=25% Similarity=0.364 Sum_probs=47.9
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE---EEeCCcEEEEeCCCcccC
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW---VRFGKDLEFLDSPGIIPM 275 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~---~~~~~~~~liDTPGi~~~ 275 (316)
..++|+++|.+||||||++|+|+++..+.++...++|..... ...+..+.+|||||+.+.
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEG 99 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCch
Confidence 357899999999999999999999988788887766544322 123567999999999865
No 71
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.00 E-value=4.4e-10 Score=104.63 Aligned_cols=55 Identities=42% Similarity=0.538 Sum_probs=45.2
Q ss_pred EeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-CC-----------------cEEEEeCCCcccC
Q 021210 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GK-----------------DLEFLDSPGIIPM 275 (316)
Q Consensus 220 i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~~-----------------~~~liDTPGi~~~ 275 (316)
|++||+||||||||+|+|++.+. .++++||||++... +.+ +. .+.++||||+...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~ 75 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKG 75 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCC
Confidence 58999999999999999999886 89999999988543 222 11 3899999999854
No 72
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.00 E-value=5.8e-10 Score=97.28 Aligned_cols=58 Identities=33% Similarity=0.551 Sum_probs=50.9
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCc-ccccCCCCCceeeEEEEEeCCcEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~-~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~~ 274 (316)
..+|+++|.+|||||||+|+|.+.. ...+++.+|+|++...+..+.++.|+||||+..
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~ 82 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGY 82 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCC
Confidence 4689999999999999999999875 667888999999988777777899999999754
No 73
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.00 E-value=1.2e-09 Score=94.66 Aligned_cols=59 Identities=31% Similarity=0.524 Sum_probs=50.8
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCc-ccccCCCCCceeeEEEEEeCCcEEEEeCCCcccC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM 275 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~-~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~~~ 275 (316)
..+|+++|.+|+|||||+|+|.+.. ...+++.+|+|++...+..+.++.++||||+...
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~ 77 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYA 77 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccc
Confidence 4689999999999999999999875 5678889999999887776678999999998543
No 74
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.99 E-value=9.4e-10 Score=102.87 Aligned_cols=61 Identities=33% Similarity=0.475 Sum_probs=52.0
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE---EEEEeCCcEEEEeCCCcccCCC
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL---KWVRFGKDLEFLDSPGIIPMRI 277 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~---~~~~~~~~~~liDTPGi~~~~~ 277 (316)
...++++||+||||||||+|+|++.+ ..++.+|+||... .+.+.+..++|+|+|||+...-
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~-seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas 125 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTK-SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGAS 125 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCC-ccccccCceecccccceEeecCceEEEEcCcccccCcc
Confidence 35689999999999999999999887 6899999999985 3445578899999999986533
No 75
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.98 E-value=4.1e-09 Score=93.66 Aligned_cols=100 Identities=16% Similarity=0.162 Sum_probs=70.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC-CCC-cHHHHHH--hCCCCEEEEEEccCCCChHhHHH----HHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-STT-HPLMDQW--LGNRKRILVLNREDMISMADRNA----WATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~-~~~-~~~i~~~--l~~k~~IlVlNK~DLv~~~~~~~----~~~~ 171 (316)
+-++||| .++.+.+...+..+|++++|+|+..+. ... ...+..+ ...+|+++|+||+|+.+..+... ..+.
T Consensus 87 ~iDtPG~-~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~ 165 (203)
T cd01888 87 FVDCPGH-EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYEQIKKF 165 (203)
T ss_pred EEECCCh-HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHHHHHHH
Confidence 4578998 678888889999999999999998752 222 1222222 23457899999999987543322 2222
Q ss_pred HHh---cCceEEEeccccccchhhhHHHHHHh
Q 021210 172 FAK---QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 172 ~~~---~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
+.. .+..++++||++|+|+++|.+.+.+.
T Consensus 166 ~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~ 197 (203)
T cd01888 166 VKGTIAENAPIIPISAQLKYNIDVLLEYIVKK 197 (203)
T ss_pred HhccccCCCcEEEEeCCCCCCHHHHHHHHHHh
Confidence 322 24678999999999999998887653
No 76
>PRK12736 elongation factor Tu; Reviewed
Probab=98.98 E-value=4.8e-09 Score=102.56 Aligned_cols=128 Identities=16% Similarity=0.065 Sum_probs=92.3
Q ss_pred CCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--C
Q 021210 72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N 147 (316)
Q Consensus 72 ~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~ 147 (316)
+.|-...|++.+.|+|.....|.+..+. +-+.||| .++.+++...+..+|++++|+|+..+......+...++. +
T Consensus 49 ~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh-~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g 127 (394)
T PRK12736 49 SIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVG 127 (394)
T ss_pred hhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCH-HHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcC
Confidence 5677788999999999998888765443 7799999 688899999999999999999999876554444433332 4
Q ss_pred CC-EEEEEEccCCCChHhHH-----HHHHHHHhcC-----ceEEEecccccc--------chhhhHHHHHHh
Q 021210 148 RK-RILVLNREDMISMADRN-----AWATYFAKQG-----TKVIFSNGQLGM--------GTMKLSRLAKAL 200 (316)
Q Consensus 148 k~-~IlVlNK~DLv~~~~~~-----~~~~~~~~~g-----~~vi~iSa~~g~--------gi~~L~~~L~~l 200 (316)
.| +|+++||+|+++.++.. +..+++...+ .+++++||++|. ++..|.+.+...
T Consensus 128 ~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~ 199 (394)
T PRK12736 128 VPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEY 199 (394)
T ss_pred CCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHh
Confidence 56 67899999998544322 2333333334 468999999983 456666665554
No 77
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.97 E-value=4e-09 Score=103.50 Aligned_cols=100 Identities=17% Similarity=0.180 Sum_probs=73.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC-CC---CcHHHHHHhCCCCEEEEEEccCCCChHhHH----HHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-ST---THPLMDQWLGNRKRILVLNREDMISMADRN----AWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~-~~---~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~----~~~~~ 171 (316)
+-++||| .++.+++...+..+|++++|+|++.+. .. ++..+...++.+++++|+||+|+.+.+... +..+.
T Consensus 84 liDtPGh-~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~ 162 (406)
T TIGR03680 84 FVDAPGH-ETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEIKEF 162 (406)
T ss_pred EEECCCH-HHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHHHHhh
Confidence 6789999 788999999999999999999999765 22 222333334467899999999998754322 22222
Q ss_pred HHhc---CceEEEeccccccchhhhHHHHHHh
Q 021210 172 FAKQ---GTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 172 ~~~~---g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
+... +..++++||++|+|+++|.+.|...
T Consensus 163 l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~ 194 (406)
T TIGR03680 163 VKGTVAENAPIIPVSALHNANIDALLEAIEKF 194 (406)
T ss_pred hhhcccCCCeEEEEECCCCCChHHHHHHHHHh
Confidence 2221 3578999999999999999988764
No 78
>PRK15494 era GTPase Era; Provisional
Probab=98.96 E-value=1.3e-09 Score=104.65 Aligned_cols=59 Identities=31% Similarity=0.577 Sum_probs=49.2
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-CCcEEEEeCCCcccC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPM 275 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~~~~~liDTPGi~~~ 275 (316)
..+|+++|.||||||||+|+|++.+...+++.++||++... +.. +.++.++||||+...
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~ 113 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEP 113 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCC
Confidence 46899999999999999999999988888999999998542 222 457899999999643
No 79
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.96 E-value=6.9e-09 Score=88.62 Aligned_cols=103 Identities=19% Similarity=0.153 Sum_probs=76.1
Q ss_pred cccccch---HHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHhcC
Q 021210 100 VQWYPGH---IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQG 176 (316)
Q Consensus 100 i~~~Pgh---~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g 176 (316)
+-++||. ..+..+.+...+..+|++++|+|+..+.+.....+.....++|+++++||+|+.+. +.+.+.+++.+.+
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~~ 119 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDA-DVAATRKLLLETG 119 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhccCCCCeEEEEEccccCcc-cHHHHHHHHHHcC
Confidence 4567774 23466667777899999999999987765555555544446789999999998643 3344455555666
Q ss_pred --ceEEEeccccccchhhhHHHHHHhhhh
Q 021210 177 --TKVIFSNGQLGMGTMKLSRLAKALASD 203 (316)
Q Consensus 177 --~~vi~iSa~~g~gi~~L~~~L~~l~~~ 203 (316)
.+++++||++|.|+++|.+.+.++...
T Consensus 120 ~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 120 FEEPIFELNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred CCCCEEEEECCCccCHHHHHHHHHHhchh
Confidence 378999999999999999888776543
No 80
>CHL00071 tufA elongation factor Tu
Probab=98.96 E-value=5.9e-09 Score=102.41 Aligned_cols=117 Identities=17% Similarity=0.079 Sum_probs=87.1
Q ss_pred CCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--C
Q 021210 72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N 147 (316)
Q Consensus 72 ~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~ 147 (316)
..|-...|++.+.|+|.....|....+. +-++||| .++.+++...+..+|++++|+|++.+......++..++. +
T Consensus 49 ~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh-~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g 127 (409)
T CHL00071 49 EIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVG 127 (409)
T ss_pred cccCChhhhcCCEeEEccEEEEccCCeEEEEEECCCh-HHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcC
Confidence 4566678999999999998888765443 7799998 689999999999999999999999877554444444432 5
Q ss_pred CC-EEEEEEccCCCChHhH-----HHHHHHHHhcC-----ceEEEeccccccc
Q 021210 148 RK-RILVLNREDMISMADR-----NAWATYFAKQG-----TKVIFSNGQLGMG 189 (316)
Q Consensus 148 k~-~IlVlNK~DLv~~~~~-----~~~~~~~~~~g-----~~vi~iSa~~g~g 189 (316)
.| +|+++||+|+++..+. ++..+++...+ ..++++||.+|.+
T Consensus 128 ~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 128 VPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred CCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhccc
Confidence 56 6789999999875442 12333444433 4689999998863
No 81
>PRK00089 era GTPase Era; Reviewed
Probab=98.95 E-value=1.2e-09 Score=102.31 Aligned_cols=58 Identities=36% Similarity=0.601 Sum_probs=48.4
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE-EEe-C-CcEEEEeCCCcccCC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW-VRF-G-KDLEFLDSPGIIPMR 276 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~-~~~-~-~~~~liDTPGi~~~~ 276 (316)
.|+++|.||||||||+|+|++.+.+.+++.|+||++... +.. + .++.++||||+....
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~ 67 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK 67 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch
Confidence 589999999999999999999998899999999998532 222 2 478999999997543
No 82
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.95 E-value=1.2e-08 Score=99.82 Aligned_cols=116 Identities=17% Similarity=0.063 Sum_probs=84.2
Q ss_pred CCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CC
Q 021210 72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GN 147 (316)
Q Consensus 72 ~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~ 147 (316)
+.|-...|++.++|+|.....|.+..+. +-++||| .++.+++...+..+|.+++|+|++.+......+...++ .+
T Consensus 49 ~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~g 127 (394)
T TIGR00485 49 QIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVG 127 (394)
T ss_pred cccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCch-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC
Confidence 5677788999999999998888765443 7799999 67889999999999999999999987544333333332 24
Q ss_pred CCE-EEEEEccCCCChHhHH-----HHHHHHHhcC-----ceEEEecccccc
Q 021210 148 RKR-ILVLNREDMISMADRN-----AWATYFAKQG-----TKVIFSNGQLGM 188 (316)
Q Consensus 148 k~~-IlVlNK~DLv~~~~~~-----~~~~~~~~~g-----~~vi~iSa~~g~ 188 (316)
.|. |+++||+|+++.++.. +..+++...+ ++++++|+.+|.
T Consensus 128 i~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 128 VPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence 554 5789999998754321 2333344433 578999999874
No 83
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.95 E-value=9.3e-09 Score=88.26 Aligned_cols=122 Identities=17% Similarity=0.095 Sum_probs=77.6
Q ss_pred hhhhhccccCCcceE--EEe---cccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHH-Hh-CC
Q 021210 77 YEEECDWADLDADLY--YWT---KSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ-WL-GN 147 (316)
Q Consensus 77 ~~e~e~~~~~d~~~~--~~~---~~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~-~l-~~ 147 (316)
..|++.+.+.+.... .|. .... .+-++||| .++...+...+..+|++|+|+|+.++....+..... +. .+
T Consensus 41 ~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~ 119 (179)
T cd01890 41 DLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGH-VDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENN 119 (179)
T ss_pred hhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCC-hhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcC
Confidence 445566666554432 221 1111 15678999 667778888899999999999998765543332222 22 36
Q ss_pred CCEEEEEEccCCCChHhHHHHHHHHHhcCc---eEEEeccccccchhhhHHHHHH
Q 021210 148 RKRILVLNREDMISMADRNAWATYFAKQGT---KVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 148 k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~---~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
+|+++|+||+|+.+....+...+.....+. +++.+||++|.|+++|.+.+..
T Consensus 120 ~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 174 (179)
T cd01890 120 LEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVE 174 (179)
T ss_pred CCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHh
Confidence 799999999998643211111111122333 4889999999999998877654
No 84
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.94 E-value=1.5e-08 Score=87.17 Aligned_cols=129 Identities=16% Similarity=0.054 Sum_probs=86.3
Q ss_pred CCCcchhhhhhccccCCcceEEEecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--
Q 021210 71 NGSIEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG-- 146 (316)
Q Consensus 71 ~~~~g~~~e~e~~~~~d~~~~~~~~~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~-- 146 (316)
.+.+....+++...+++.......-... .+-++||+ .++.+.....+..+|.+++|+|+..+.......+...+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 113 (189)
T cd00881 35 TFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGH-EDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREG 113 (189)
T ss_pred ccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCc-HHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHC
Confidence 3445555666666666655443332222 25678998 456667778889999999999998876554444443433
Q ss_pred CCCEEEEEEccCCCChHhHHH----HHHHHHh--------------cCceEEEeccccccchhhhHHHHHHh
Q 021210 147 NRKRILVLNREDMISMADRNA----WATYFAK--------------QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 147 ~k~~IlVlNK~DLv~~~~~~~----~~~~~~~--------------~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
++|+++|+||+|+....+... ..+.+.. ...+++++|+++|.|++++.+.+...
T Consensus 114 ~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~ 185 (189)
T cd00881 114 GLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEH 185 (189)
T ss_pred CCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhh
Confidence 789999999999987433222 2222222 23678999999999999988776554
No 85
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=98.94 E-value=9e-10 Score=108.49 Aligned_cols=122 Identities=24% Similarity=0.318 Sum_probs=77.8
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHhc-----
Q 021210 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ----- 175 (316)
Q Consensus 101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~----- 175 (316)
...|+. +.+...+..++--++..|+|..+......+.+...+..+..++..||+|+.+.+....+.+.+...
T Consensus 94 ~v~~~~---y~k~~~~~~~~~~~~~~vvd~~d~p~~i~p~~~~~v~~~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~ 170 (572)
T KOG1249|consen 94 PVVPGE---YKKEKSEKQENPALARKVVDLSDEPCSIDPLLTNDVGSPRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGM 170 (572)
T ss_pred ccChhh---hhhhhhhhhhcccceEEeeecccCccccccchhhcccCCceEeeccccccccccccchHHHHHHhhcccce
Confidence 444544 666666666776678888898887778888888888877789999999999876533333333221
Q ss_pred ---C-----------ceEEEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhh
Q 021210 176 ---G-----------TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 238 (316)
Q Consensus 176 ---g-----------~~vi~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~ 238 (316)
+ ..+..++++.|.|+++|.-.+...-. -+| .+..+|++||||||++|.|+
T Consensus 171 vk~~~~en~~p~~~f~~~~~~r~ktgyg~eeLI~~lvd~~d-------f~G------df~lvg~tnvgks~~fn~ll 234 (572)
T KOG1249|consen 171 IKAGGGENLNPDFDFDHVDLIRAKTGYGIEELIVMLVDIVD-------FRG------DFYLVGATNVGKSTLFNALL 234 (572)
T ss_pred eecccccCCCcccchhhhhhhhhhhcccHHHHHHHhhheee-------ccC------ceeeeeecccchhhHHHHHh
Confidence 0 12345778888888887655433211 111 14555666666666666654
No 86
>PLN03127 Elongation factor Tu; Provisional
Probab=98.94 E-value=8.1e-09 Score=102.51 Aligned_cols=128 Identities=16% Similarity=0.057 Sum_probs=90.2
Q ss_pred CCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--C
Q 021210 72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N 147 (316)
Q Consensus 72 ~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~ 147 (316)
.+|-...|++.++|+|..+..|.+..+. +-++||| .++.+++...+..+|++++|+|++.+......++..++. +
T Consensus 98 ~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh-~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~g 176 (447)
T PLN03127 98 EIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGH-ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG 176 (447)
T ss_pred cccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCc-cchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcC
Confidence 4677778999999999999999876554 7799999 678999999999999999999999877555444444432 5
Q ss_pred CC-EEEEEEccCCCChHhHHH-----HHHHHHhcC-----ceEEEeccc---cccc-------hhhhHHHHHHh
Q 021210 148 RK-RILVLNREDMISMADRNA-----WATYFAKQG-----TKVIFSNGQ---LGMG-------TMKLSRLAKAL 200 (316)
Q Consensus 148 k~-~IlVlNK~DLv~~~~~~~-----~~~~~~~~g-----~~vi~iSa~---~g~g-------i~~L~~~L~~l 200 (316)
.| +|+++||+|+++..+..+ +.+.+...+ ..++++|+. +|.| +..|.+.+.++
T Consensus 177 ip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~ 250 (447)
T PLN03127 177 VPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY 250 (447)
T ss_pred CCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence 66 578999999986543222 222222222 457777765 4444 45566655554
No 87
>PRK04213 GTP-binding protein; Provisional
Probab=98.92 E-value=1.4e-09 Score=95.74 Aligned_cols=55 Identities=36% Similarity=0.550 Sum_probs=47.1
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~ 273 (316)
..+|+++|.+|||||||+|+|.+.. ..++..||+|++...+..+ ++.++||||+.
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~ 63 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHYDWG-DFILTDLPGFG 63 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEEeec-ceEEEeCCccc
Confidence 4689999999999999999999876 5688899999987666555 68999999973
No 88
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.92 E-value=2e-09 Score=109.24 Aligned_cols=64 Identities=31% Similarity=0.506 Sum_probs=52.6
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCcccCCCCCHHH
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRISDQAA 282 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~~~~~~~~~ 282 (316)
.+|+++|.||||||||+|+|+|.+ .+|++.||+|-+...-.+ ++.+.++|.||+.+......+|
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE 70 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDE 70 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC-ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchH
Confidence 459999999999999999999887 699999999988654333 5679999999998765544444
No 89
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.91 E-value=1.1e-08 Score=86.08 Aligned_cols=98 Identities=20% Similarity=0.212 Sum_probs=80.2
Q ss_pred cccccch---HHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCC-ChHhHHHHHHHHHhc
Q 021210 100 VQWYPGH---IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMI-SMADRNAWATYFAKQ 175 (316)
Q Consensus 100 i~~~Pgh---~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv-~~~~~~~~~~~~~~~ 175 (316)
+.++||. +..+.+.+.....+||+|++|.|+..+...+.+.+...+ .+|+|-|+||+|+. +.++.+.-.++++..
T Consensus 40 ~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f-~~pvIGVITK~Dl~~~~~~i~~a~~~L~~a 118 (143)
T PF10662_consen 40 TIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMF-NKPVIGVITKIDLPSDDANIERAKKWLKNA 118 (143)
T ss_pred EEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhccc-CCCEEEEEECccCccchhhHHHHHHHHHHc
Confidence 3677876 345677778888999999999999999888888888776 68999999999998 444555555667777
Q ss_pred Cc-eEEEeccccccchhhhHHHHH
Q 021210 176 GT-KVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 176 g~-~vi~iSa~~g~gi~~L~~~L~ 198 (316)
|. +++.+|+.+|+|+++|+++|+
T Consensus 119 G~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 119 GVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred CCCCeEEEECCCCcCHHHHHHHHh
Confidence 73 578899999999999998875
No 90
>COG1159 Era GTPase [General function prediction only]
Probab=98.88 E-value=2.2e-08 Score=92.92 Aligned_cols=96 Identities=18% Similarity=0.160 Sum_probs=77.5
Q ss_pred HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCC--CCEEEEEEccCCCChHh-HHHHHHHHHhcC--ceEEEecc
Q 021210 110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGN--RKRILVLNREDMISMAD-RNAWATYFAKQG--TKVIFSNG 184 (316)
Q Consensus 110 ~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~--k~~IlVlNK~DLv~~~~-~~~~~~~~~~~g--~~vi~iSa 184 (316)
..+..+..+..+|+|++|+|+..+++..+..+.+.+.. .|+++++||+|+++... +....+++.... .+++++||
T Consensus 75 m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA 154 (298)
T COG1159 75 MNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISA 154 (298)
T ss_pred HHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeec
Confidence 44555677899999999999999999988888887764 69999999999998766 455555555443 47899999
Q ss_pred ccccchhhhHHHHHHhhhhhh
Q 021210 185 QLGMGTMKLSRLAKALASDVN 205 (316)
Q Consensus 185 ~~g~gi~~L~~~L~~l~~~~~ 205 (316)
++|.|++.|.+.+....++..
T Consensus 155 ~~g~n~~~L~~~i~~~Lpeg~ 175 (298)
T COG1159 155 LKGDNVDTLLEIIKEYLPEGP 175 (298)
T ss_pred cccCCHHHHHHHHHHhCCCCC
Confidence 999999999999888765544
No 91
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.88 E-value=2e-09 Score=103.03 Aligned_cols=57 Identities=35% Similarity=0.443 Sum_probs=47.2
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe--CCcEEEEeCCCcccC
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF--GKDLEFLDSPGIIPM 275 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~--~~~~~liDTPGi~~~ 275 (316)
..|++||+||||||||+|+|.+.+ ..++++|+||++... +.. +..+.++||||+...
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~g 219 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEG 219 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCC
Confidence 359999999999999999999866 578999999999654 333 246899999999753
No 92
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.88 E-value=3.8e-08 Score=91.29 Aligned_cols=92 Identities=15% Similarity=0.089 Sum_probs=66.6
Q ss_pred HHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHHHHHh-cC-ceEEEecccc
Q 021210 111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAK-QG-TKVIFSNGQL 186 (316)
Q Consensus 111 ~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~~~~~-~g-~~vi~iSa~~ 186 (316)
.+.+...+..+|++++|+|++.+.... ..+...+. ++|+++|+||+|+.+..+..+..+.+.+ .+ .+++++||++
T Consensus 70 ~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~ 148 (270)
T TIGR00436 70 MKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALT 148 (270)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCC
Confidence 344567789999999999998765443 34444443 6899999999999866554433333332 22 3689999999
Q ss_pred ccchhhhHHHHHHhhhh
Q 021210 187 GMGTMKLSRLAKALASD 203 (316)
Q Consensus 187 g~gi~~L~~~L~~l~~~ 203 (316)
|.|+++|.+.+.+..+.
T Consensus 149 g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 149 GDNTSFLAAFIEVHLPE 165 (270)
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 99999999988776554
No 93
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.87 E-value=2.3e-08 Score=82.71 Aligned_cols=97 Identities=15% Similarity=0.069 Sum_probs=67.4
Q ss_pred cccccchH---HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHh-HHHHHHHHHhc
Q 021210 100 VQWYPGHI---AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMAD-RNAWATYFAKQ 175 (316)
Q Consensus 100 i~~~Pgh~---~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~-~~~~~~~~~~~ 175 (316)
+-++||.. ....+.+...++++|++++|+|+.++.+..+..+...+ .+|.++|+||+|+.+... .+...++++..
T Consensus 39 ~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~-~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~ 117 (142)
T TIGR02528 39 AIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPESRFPPGFASIF-VKPVIGLVTKIDLAEADVDIERAKELLETA 117 (142)
T ss_pred eecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHhc-cCCeEEEEEeeccCCcccCHHHHHHHHHHc
Confidence 44677762 12344454568999999999999988876665554443 469999999999975322 22223334444
Q ss_pred Cc-eEEEeccccccchhhhHHHH
Q 021210 176 GT-KVIFSNGQLGMGTMKLSRLA 197 (316)
Q Consensus 176 g~-~vi~iSa~~g~gi~~L~~~L 197 (316)
+. +++.+||++|.|++++.+.+
T Consensus 118 ~~~~~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 118 GAEPIFEISSVDEQGLEALVDYL 140 (142)
T ss_pred CCCcEEEEecCCCCCHHHHHHHH
Confidence 54 68899999999999887764
No 94
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.87 E-value=2e-09 Score=107.52 Aligned_cols=58 Identities=34% Similarity=0.483 Sum_probs=47.6
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEE--Ee-CCcEEEEeCCCcccC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIPM 275 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~--~~-~~~~~liDTPGi~~~ 275 (316)
-.+|++||+||||||||||+|.+.+ .+++++|+||++.... .. +..+.|+||||++..
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~ak-pkIadypfTTl~P~lGvv~~~~~~f~laDtPGlieg 219 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAK-PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPG 219 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCC-ccccccCcccccceEEEEEECCeEEEEEECCCCccc
Confidence 3579999999999999999999876 4789999999986543 22 346899999999753
No 95
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.87 E-value=2e-09 Score=91.41 Aligned_cols=55 Identities=35% Similarity=0.516 Sum_probs=43.5
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-CC-cEEEEeCCCccc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GK-DLEFLDSPGIIP 274 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~~-~~~liDTPGi~~ 274 (316)
+|+++|.+|||||||+|+|.+... .++..|++|++... +.. +. .+.++||||+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 60 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIE 60 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccC
Confidence 489999999999999999997653 77888998877532 222 33 788999999853
No 96
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.87 E-value=3.6e-09 Score=87.96 Aligned_cols=58 Identities=36% Similarity=0.483 Sum_probs=47.9
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEE--e-CCcEEEEeCCCcccC
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIPM 275 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~--~-~~~~~liDTPGi~~~ 275 (316)
++|+++|.+|+|||||+|+|.+.....+++.|++|++..... . +..+.++||||+...
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~ 62 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRET 62 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCC
Confidence 479999999999999999999988777888999998864332 2 336889999998754
No 97
>PLN03126 Elongation factor Tu; Provisional
Probab=98.86 E-value=2.4e-08 Score=99.92 Aligned_cols=116 Identities=16% Similarity=0.057 Sum_probs=84.7
Q ss_pred CCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CC
Q 021210 72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GN 147 (316)
Q Consensus 72 ~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~ 147 (316)
+.|-...|++.++++|....+|....+. +-+.||| .++.+++...+..+|++++|+|+..+......+...++ .+
T Consensus 118 ~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh-~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~g 196 (478)
T PLN03126 118 EIDAAPEERARGITINTATVEYETENRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVG 196 (478)
T ss_pred cccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCH-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC
Confidence 4677788999999999998888765443 7789999 77999999999999999999999987644333332222 24
Q ss_pred CC-EEEEEEccCCCChHhH-----HHHHHHHHhcC-----ceEEEecccccc
Q 021210 148 RK-RILVLNREDMISMADR-----NAWATYFAKQG-----TKVIFSNGQLGM 188 (316)
Q Consensus 148 k~-~IlVlNK~DLv~~~~~-----~~~~~~~~~~g-----~~vi~iSa~~g~ 188 (316)
.| +++++||+|+++.++. ++..+++.+.| ..++++|+.+|.
T Consensus 197 i~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 197 VPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred CCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccc
Confidence 55 7789999999875432 12333444433 468899998874
No 98
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.86 E-value=2e-08 Score=83.60 Aligned_cols=97 Identities=23% Similarity=0.224 Sum_probs=71.7
Q ss_pred cccccchHHH-------HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHH
Q 021210 100 VQWYPGHIAK-------TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~~~-------~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~ 170 (316)
+-++||+-.. ..+.....+..+|++++|+|++.+....+..+..++. +.|+++|+||+|+.+.... .+
T Consensus 49 i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~~ 125 (157)
T cd01894 49 LIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE---AA 125 (157)
T ss_pred EEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH---HH
Confidence 5567877321 2334456688999999999999887777766666664 6899999999999876543 23
Q ss_pred HHHhcCc-eEEEeccccccchhhhHHHHHH
Q 021210 171 YFAKQGT-KVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 171 ~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
.+.+.+. +++++|+++|.|++++.+.+.+
T Consensus 126 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 155 (157)
T cd01894 126 EFYSLGFGEPIPISAEHGRGIGDLLDAILE 155 (157)
T ss_pred HHHhcCCCCeEEEecccCCCHHHHHHHHHh
Confidence 3444554 6899999999999998877653
No 99
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.86 E-value=6.5e-09 Score=105.74 Aligned_cols=64 Identities=23% Similarity=0.310 Sum_probs=50.3
Q ss_pred CccceEEeEeccCCCCcchhHHhhhcCcccccCCC-CCceeeEEEE--EeCCcEEEEeCCCcccCCC
Q 021210 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR-PGVTRVLKWV--RFGKDLEFLDSPGIIPMRI 277 (316)
Q Consensus 214 ~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~-pgtT~~~~~~--~~~~~~~liDTPGi~~~~~ 277 (316)
....++|+++|.|||||||++|+|++++.+.++.. ++||+..... ..+..+.+|||||+.....
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~ 181 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSAS 181 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCcccc
Confidence 34567899999999999999999999987787775 6777643332 2256799999999997644
No 100
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.85 E-value=3.1e-09 Score=95.26 Aligned_cols=63 Identities=27% Similarity=0.394 Sum_probs=42.4
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCC-CCCceeeEEEEE---eCCcEEEEeCCCcccCCCCCH
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAP-RPGVTRVLKWVR---FGKDLEFLDSPGIIPMRISDQ 280 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~-~pgtT~~~~~~~---~~~~~~liDTPGi~~~~~~~~ 280 (316)
++|+++|.+|+||||++|+|+++....++. ...+|+..+... -+..+.+|||||+.+....+.
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~ 67 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDE 67 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHH
Confidence 479999999999999999999998776653 334666554332 266799999999987766443
No 101
>PRK12735 elongation factor Tu; Reviewed
Probab=98.85 E-value=2.2e-08 Score=98.01 Aligned_cols=128 Identities=18% Similarity=0.081 Sum_probs=90.1
Q ss_pred CCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CC
Q 021210 72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GN 147 (316)
Q Consensus 72 ~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~ 147 (316)
..|-...|++.++|+|.....|....+. +-++||| .++.+++...+..+|++++|+|+..+......+...++ .+
T Consensus 49 ~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh-~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~g 127 (396)
T PRK12735 49 QIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127 (396)
T ss_pred hccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCH-HHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcC
Confidence 4566678899999999988888665443 6799999 68889999999999999999999986544333333332 25
Q ss_pred CCEE-EEEEccCCCChHhHH-----HHHHHHHhcC-----ceEEEecccccc----------chhhhHHHHHHh
Q 021210 148 RKRI-LVLNREDMISMADRN-----AWATYFAKQG-----TKVIFSNGQLGM----------GTMKLSRLAKAL 200 (316)
Q Consensus 148 k~~I-lVlNK~DLv~~~~~~-----~~~~~~~~~g-----~~vi~iSa~~g~----------gi~~L~~~L~~l 200 (316)
.|.+ +++||+|+++.++.. +..+++...+ +.++++|+.+|. ++..|.+.+..+
T Consensus 128 i~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 128 VPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred CCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 6655 679999998643321 2223333332 568999999984 556677666654
No 102
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.85 E-value=1.6e-08 Score=99.47 Aligned_cols=100 Identities=17% Similarity=0.131 Sum_probs=71.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC-CCCcHHHHH---HhCCCCEEEEEEccCCCChHhHH----HHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-STTHPLMDQ---WLGNRKRILVLNREDMISMADRN----AWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~-~~~~~~i~~---~l~~k~~IlVlNK~DLv~~~~~~----~~~~~ 171 (316)
+-++||| .++.+++...+..+|++++|+|++.+. ......... .+..+++++|+||+|+.+.++.. +..+.
T Consensus 89 liDtPG~-~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~ 167 (411)
T PRK04000 89 FVDAPGH-ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYEQIKEF 167 (411)
T ss_pred EEECCCH-HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHHHHHHHH
Confidence 6688999 678888989999999999999999875 232222222 23346789999999998754322 22222
Q ss_pred HHh---cCceEEEeccccccchhhhHHHHHHh
Q 021210 172 FAK---QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 172 ~~~---~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
+.. .+.+++++||++|.|+++|.+.|...
T Consensus 168 l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~ 199 (411)
T PRK04000 168 VKGTVAENAPIIPVSALHKVNIDALIEAIEEE 199 (411)
T ss_pred hccccCCCCeEEEEECCCCcCHHHHHHHHHHh
Confidence 222 13678999999999999999887764
No 103
>PRK00049 elongation factor Tu; Reviewed
Probab=98.84 E-value=2.5e-08 Score=97.65 Aligned_cols=128 Identities=18% Similarity=0.086 Sum_probs=91.8
Q ss_pred CCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--C
Q 021210 72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N 147 (316)
Q Consensus 72 ~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~ 147 (316)
+.|-...|++.+.|+|.....|.+..+. +-++||| .++.+++...+..+|++++|+|++.+.......+..++. +
T Consensus 49 ~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~-~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g 127 (396)
T PRK00049 49 QIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG 127 (396)
T ss_pred hccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCH-HHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcC
Confidence 4666778999999999998888765443 6799999 689999999999999999999999876655444444432 5
Q ss_pred CCEE-EEEEccCCCChHhHH-----HHHHHHHhcC-----ceEEEecccccc----------chhhhHHHHHHh
Q 021210 148 RKRI-LVLNREDMISMADRN-----AWATYFAKQG-----TKVIFSNGQLGM----------GTMKLSRLAKAL 200 (316)
Q Consensus 148 k~~I-lVlNK~DLv~~~~~~-----~~~~~~~~~g-----~~vi~iSa~~g~----------gi~~L~~~L~~l 200 (316)
.|.+ +++||+|+++..+.. +..+.+...+ ..++++||.+|. |+..|.+.|..+
T Consensus 128 ~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 128 VPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred CCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 6765 689999998643321 2333344333 467899999875 345666666553
No 104
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.84 E-value=3.3e-09 Score=104.36 Aligned_cols=55 Identities=33% Similarity=0.484 Sum_probs=46.9
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe----CCcEEEEeCCCccc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIP 274 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~----~~~~~liDTPGi~~ 274 (316)
.|++||+||||||||||+|.+.+ .+++++|+||+......+ +..+.++||||+..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak-~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGlie 218 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAK-PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIE 218 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCC-CccccCCcceeceEEEEEEEeCCceEEEEECCCCcc
Confidence 69999999999999999999876 578899999998764433 45799999999975
No 105
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.84 E-value=4.3e-09 Score=105.20 Aligned_cols=57 Identities=39% Similarity=0.530 Sum_probs=48.6
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~ 273 (316)
..+|+++|.||||||||+|+|++.....+++.||+|++...... +..+.|+||||+.
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~ 97 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWE 97 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcC
Confidence 45799999999999999999999877788999999998654432 5568899999986
No 106
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.84 E-value=2e-09 Score=105.43 Aligned_cols=72 Identities=26% Similarity=0.366 Sum_probs=56.8
Q ss_pred ccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeC---CcEEEEeCCCcccCCCCCHHHHHHHH
Q 021210 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG---KDLEFLDSPGIIPMRISDQAAAIKLA 287 (316)
Q Consensus 215 ~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~---~~~~liDTPGi~~~~~~~~~~~~~La 287 (316)
+..-+..++|+|||||||++|.+...+ ..+.++++||+..-..+++ ...+++|||||++...++...-.+.+
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtrad-vevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqs 240 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRAD-DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQI 240 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccc-cccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHH
Confidence 345578999999999999999999766 6899999999996544443 34679999999988777766555544
No 107
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.83 E-value=1.2e-08 Score=90.02 Aligned_cols=58 Identities=28% Similarity=0.296 Sum_probs=43.6
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-CC-cEEEEeCCCcccC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GK-DLEFLDSPGIIPM 275 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~~-~~~liDTPGi~~~ 275 (316)
.++|+++|.+|||||||+|+|.+.. ..+.+.+++|.+... +.. +. .+.++||||+...
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 102 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGAD-VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRD 102 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcch-hccCCccceeccceeEEEEecCCceEEEeCCCccccC
Confidence 4689999999999999999999875 355566677766432 222 33 6889999999643
No 108
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.82 E-value=4.9e-09 Score=88.37 Aligned_cols=59 Identities=37% Similarity=0.485 Sum_probs=48.0
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EE-eCCcEEEEeCCCcccC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VR-FGKDLEFLDSPGIIPM 275 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~-~~~~~~liDTPGi~~~ 275 (316)
+++|+++|.+|+|||||+|+|.+......++.|++|++... +. .+..+.++||||+...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~ 63 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRK 63 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccc
Confidence 56899999999999999999998876777888999988632 22 2456899999998643
No 109
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=6.7e-09 Score=103.31 Aligned_cols=124 Identities=21% Similarity=0.223 Sum_probs=95.8
Q ss_pred CCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC----------CC
Q 021210 69 NSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL----------ST 136 (316)
Q Consensus 69 ~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~----------~~ 136 (316)
.+=..|+...|||.+.|.|+..-+|.+.... +-++||| ..+..+|...+..||+.++|+|+..+. +.
T Consensus 226 yawiLDeT~eERerGvTm~v~~~~fes~~~~~tliDaPGh-kdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtr 304 (603)
T KOG0458|consen 226 YAWILDETKEERERGVTMDVKTTWFESKSKIVTLIDAPGH-KDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTR 304 (603)
T ss_pred eeEEeccchhhhhcceeEEeeeEEEecCceeEEEecCCCc-cccchhhhccccccceEEEEEECCcchhhhccCCCCchH
Confidence 3345688899999999999999999866553 8899998 889999999999999999999996432 33
Q ss_pred CcHHHHHHhCCCCEEEEEEccCCCChHh-----HHHHHH-HH-HhcC-----ceEEEeccccccchhhh
Q 021210 137 THPLMDQWLGNRKRILVLNREDMISMAD-----RNAWAT-YF-AKQG-----TKVIFSNGQLGMGTMKL 193 (316)
Q Consensus 137 ~~~~i~~~l~~k~~IlVlNK~DLv~~~~-----~~~~~~-~~-~~~g-----~~vi~iSa~~g~gi~~L 193 (316)
.+..+.+.++...+|+++||+|+++.++ +...+. ++ +..| ..++|+|+..|+|+-+.
T Consensus 305 Eha~llr~Lgi~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 305 EHALLLRSLGISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred HHHHHHHHcCcceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 4556677788889999999999997653 222222 33 2334 47899999999986543
No 110
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=5.2e-08 Score=94.53 Aligned_cols=128 Identities=22% Similarity=0.195 Sum_probs=102.0
Q ss_pred cchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC---CCCcHHHHHHhCCC
Q 021210 74 IEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL---STTHPLMDQWLGNR 148 (316)
Q Consensus 74 ~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~---~~~~~~i~~~l~~k 148 (316)
|=+..|.+.++|+|-.++||...-.. +.+.||| .++.++|...+.-+|.+++|||+.+++ +.++..+.++++.+
T Consensus 26 d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh-~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~ 104 (447)
T COG3276 26 DRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGH-PDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIK 104 (447)
T ss_pred ccchhhhhcCceEeeeeEeccCCCCceEEeeCCCc-HHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCC
Confidence 34456777788999999998877554 7788999 889999999999999999999997665 55677778888888
Q ss_pred CEEEEEEccCCCChHhHHHHHHHHHh-c---CceEEEeccccccchhhhHHHHHHhhh
Q 021210 149 KRILVLNREDMISMADRNAWATYFAK-Q---GTKVIFSNGQLGMGTMKLSRLAKALAS 202 (316)
Q Consensus 149 ~~IlVlNK~DLv~~~~~~~~~~~~~~-~---g~~vi~iSa~~g~gi~~L~~~L~~l~~ 202 (316)
..++|+||+|+++...+++..+.+.. . ..+++.+|++.|+|+++|++.|..+..
T Consensus 105 ~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 105 NGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred ceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence 89999999999987654444333221 1 145688999999999999999998874
No 111
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.80 E-value=6.8e-09 Score=88.08 Aligned_cols=55 Identities=40% Similarity=0.609 Sum_probs=44.1
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCccc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~ 274 (316)
+|+++|.+|||||||+|+|.+.. ..+++.|++|++...... +.++.++||||+..
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 59 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAK-PEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLD 59 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCC-CccCCCCCcccceeEEEEccCceEEEEEECCCcCC
Confidence 58999999999999999999876 356677888887654332 34789999999853
No 112
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.80 E-value=6.4e-08 Score=84.94 Aligned_cols=118 Identities=19% Similarity=0.109 Sum_probs=77.2
Q ss_pred hhhhhccccCCcceEEEecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEE
Q 021210 77 YEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRIL 152 (316)
Q Consensus 77 ~~e~e~~~~~d~~~~~~~~~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~Il 152 (316)
..|.+.+.+++.....+..... .+-++||| .++...+...+..+|.+++|+|+.++.......+...+ .+.|+++
T Consensus 44 ~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~-~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~ii 122 (194)
T cd01891 44 DLERERGITILAKNTAVTYKDTKINIVDTPGH-ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIV 122 (194)
T ss_pred hhHHhcccccccceeEEEECCEEEEEEECCCc-HHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEE
Confidence 3455566666655443333222 36788999 66777888889999999999999875433222222222 3679999
Q ss_pred EEEccCCCChH---hHHHHHHHHHh-------cCceEEEeccccccchhhhHH
Q 021210 153 VLNREDMISMA---DRNAWATYFAK-------QGTKVIFSNGQLGMGTMKLSR 195 (316)
Q Consensus 153 VlNK~DLv~~~---~~~~~~~~~~~-------~g~~vi~iSa~~g~gi~~L~~ 195 (316)
|+||+|+.... ..+++.+.+.. .++.++++||++|.|+.++..
T Consensus 123 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~~ 175 (194)
T cd01891 123 VINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLED 175 (194)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccccc
Confidence 99999996432 13344444422 246789999999999866543
No 113
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.79 E-value=4.8e-09 Score=87.38 Aligned_cols=55 Identities=45% Similarity=0.663 Sum_probs=45.1
Q ss_pred eEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCcccC
Q 021210 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (316)
Q Consensus 221 ~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~~ 275 (316)
+++|.+|||||||+|+|.+.....++..+++|++...... +..+.++||||+...
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~ 58 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPD 58 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCc
Confidence 4799999999999999998877778888999987654332 456889999999754
No 114
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.78 E-value=8.7e-09 Score=86.13 Aligned_cols=54 Identities=41% Similarity=0.655 Sum_probs=43.2
Q ss_pred EeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-CCcEEEEeCCCcccCC
Q 021210 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPMR 276 (316)
Q Consensus 222 ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~~~~~liDTPGi~~~~ 276 (316)
++|.+|||||||+|+|.+.. ..++..||+|++... +.. +.++.++||||+....
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 57 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLS 57 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccC
Confidence 58999999999999999876 678888999988642 333 4568999999997543
No 115
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.77 E-value=7.7e-09 Score=101.12 Aligned_cols=57 Identities=30% Similarity=0.373 Sum_probs=45.4
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-------------------------CCcEEEEeCC
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-------------------------GKDLEFLDSP 270 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-------------------------~~~~~liDTP 270 (316)
++|++||.||||||||+|+|++.+ ..++++|+||++... ... ...++++|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~-~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD-VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc-ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 579999999999999999999876 577999999987532 110 1246799999
Q ss_pred CcccC
Q 021210 271 GIIPM 275 (316)
Q Consensus 271 Gi~~~ 275 (316)
|+...
T Consensus 81 Gl~~g 85 (396)
T PRK09602 81 GLVPG 85 (396)
T ss_pred CcCCC
Confidence 99754
No 116
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.77 E-value=1.3e-08 Score=84.85 Aligned_cols=59 Identities=36% Similarity=0.565 Sum_probs=46.9
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCcccC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~~ 275 (316)
..+|+++|.+|+|||||+|+|++.....+++.+++|+....... +..+.++||||+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 64 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKP 64 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcc
Confidence 35799999999999999999999887777777888877543222 245889999998644
No 117
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.77 E-value=7.5e-09 Score=98.90 Aligned_cols=57 Identities=35% Similarity=0.496 Sum_probs=46.7
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEeC--CcEEEEeCCCcccC
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG--KDLEFLDSPGIIPM 275 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~~--~~~~liDTPGi~~~ 275 (316)
..|++||+||||||||+|+|.+.+ ..++++|+||+.... +..+ ..+.|+||||+...
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~ 218 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEG 218 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccC
Confidence 369999999999999999999865 578999999988543 3332 47899999999753
No 118
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.76 E-value=7.6e-08 Score=92.81 Aligned_cols=95 Identities=17% Similarity=0.228 Sum_probs=65.6
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH----HHHHHhC--CCCEEEEEEccCCCChHhHHHHHHHHHh
Q 021210 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP----LMDQWLG--NRKRILVLNREDMISMADRNAWATYFAK 174 (316)
Q Consensus 101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~----~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~~~~~ 174 (316)
...|.+..+..+.+.+.+.+||++|+|+|+.++....+. .+...+. ++|+++|+||+|+.+..+... +..
T Consensus 249 ~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~----~~~ 324 (351)
T TIGR03156 249 RDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIER----LEE 324 (351)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHHH----HHh
Confidence 333444445566677789999999999999987654332 1222233 689999999999986543322 112
Q ss_pred cCceEEEeccccccchhhhHHHHHH
Q 021210 175 QGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 175 ~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
...+++++||++|.|+++|.+.+.+
T Consensus 325 ~~~~~i~iSAktg~GI~eL~~~I~~ 349 (351)
T TIGR03156 325 GYPEAVFVSAKTGEGLDLLLEAIAE 349 (351)
T ss_pred CCCCEEEEEccCCCCHHHHHHHHHh
Confidence 2245799999999999999887654
No 119
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.73 E-value=1.4e-08 Score=106.73 Aligned_cols=57 Identities=32% Similarity=0.522 Sum_probs=47.8
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCcccC
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~~ 275 (316)
.+|+++|.||||||||+|+|++.+ ..+++.||+|.+.....+ +..+.++||||+.+.
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~-~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl 63 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGAR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSL 63 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCceEeeEEEEEEcCceEEEEEECCCcccc
Confidence 579999999999999999999876 489999999998653332 446899999999754
No 120
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.73 E-value=1.3e-08 Score=106.70 Aligned_cols=57 Identities=42% Similarity=0.578 Sum_probs=49.1
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCccc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~ 274 (316)
.+|+++|.||||||||+|+|++.+...+++.||+|++...... +..+.++||||+..
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~ 335 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA 335 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCC
Confidence 5799999999999999999999887889999999999765433 45789999999863
No 121
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.73 E-value=1.2e-07 Score=97.49 Aligned_cols=129 Identities=15% Similarity=0.070 Sum_probs=88.8
Q ss_pred CCCcchhhhhhccccCCcceE--EEec--c-cc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHH-
Q 021210 71 NGSIEAYEEECDWADLDADLY--YWTK--S-LR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMD- 142 (316)
Q Consensus 71 ~~~~g~~~e~e~~~~~d~~~~--~~~~--~-~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~- 142 (316)
.+.|-...|++.+++++.... .|.. . .. .+-++||| .++...+...++.+|.+|+|+|+..+.........
T Consensus 42 ~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh-~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~ 120 (600)
T PRK05433 42 QVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH-VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 120 (600)
T ss_pred ccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc-HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH
Confidence 455666779999999987655 3331 1 11 26689999 67888888899999999999999987654332222
Q ss_pred HHh-CCCCEEEEEEccCCCChHhHHHHHHHHH-hcCc---eEEEeccccccchhhhHHHHHHhh
Q 021210 143 QWL-GNRKRILVLNREDMISMADRNAWATYFA-KQGT---KVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 143 ~~l-~~k~~IlVlNK~DLv~~~~~~~~~~~~~-~~g~---~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
.+. .+.|+++|+||+|+..... ....+.+. ..+. +++++||++|.|+++|.+.+....
T Consensus 121 ~~~~~~lpiIvViNKiDl~~a~~-~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~l 183 (600)
T PRK05433 121 LALENDLEIIPVLNKIDLPAADP-ERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERI 183 (600)
T ss_pred HHHHCCCCEEEEEECCCCCcccH-HHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhC
Confidence 222 3678999999999864321 11112222 1333 489999999999999988876543
No 122
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.73 E-value=9.9e-08 Score=97.95 Aligned_cols=127 Identities=15% Similarity=0.108 Sum_probs=88.8
Q ss_pred CCCcchhhhhhccccCCcceEE--Ee--cc-cc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH-HH
Q 021210 71 NGSIEAYEEECDWADLDADLYY--WT--KS-LR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MD 142 (316)
Q Consensus 71 ~~~~g~~~e~e~~~~~d~~~~~--~~--~~-~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~-i~ 142 (316)
.+.|-...|++.+++++..... |. +. .. .+-++||| .++...+...++.+|.+|+|+|+.++....... +.
T Consensus 38 ~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~-~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~ 116 (595)
T TIGR01393 38 QVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH-VDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVY 116 (595)
T ss_pred cccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCc-HHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHH
Confidence 4566666789999999876653 32 11 11 26789999 678888889999999999999999876544322 22
Q ss_pred HHh-CCCCEEEEEEccCCCChHh---HHHHHHHHHhcCc---eEEEeccccccchhhhHHHHHHhh
Q 021210 143 QWL-GNRKRILVLNREDMISMAD---RNAWATYFAKQGT---KVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 143 ~~l-~~k~~IlVlNK~DLv~~~~---~~~~~~~~~~~g~---~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
.++ .+.|+++|+||+|+.+... .+++.+. .+. +++++||++|.|+++|.+.+.+..
T Consensus 117 ~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~---lg~~~~~vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 117 LALENDLEIIPVINKIDLPSADPERVKKEIEEV---IGLDASEAILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred HHHHcCCCEEEEEECcCCCccCHHHHHHHHHHH---hCCCcceEEEeeccCCCCHHHHHHHHHHhC
Confidence 222 3679999999999864321 1222222 232 479999999999999988876543
No 123
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.72 E-value=1.6e-08 Score=84.63 Aligned_cols=55 Identities=31% Similarity=0.564 Sum_probs=46.8
Q ss_pred EeEeccCCCCcchhHHhhhc-CcccccCCCCCceeeEEEEEeCCcEEEEeCCCccc
Q 021210 220 AGIVGYPNVGKSSLINRLLK-RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP 274 (316)
Q Consensus 220 i~ivG~pNvGKSTLiN~L~~-~~~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~~ 274 (316)
|+++|.+|+|||||+|+|.+ ......++.+++|.....+..+..+.++||||+..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~ 57 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGY 57 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccc
Confidence 79999999999999999994 44456778889998887777777899999999864
No 124
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.71 E-value=9.1e-09 Score=87.59 Aligned_cols=51 Identities=39% Similarity=0.583 Sum_probs=41.5
Q ss_pred EeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe--CCcEEEEeCCCcc
Q 021210 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF--GKDLEFLDSPGII 273 (316)
Q Consensus 222 ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~--~~~~~liDTPGi~ 273 (316)
++|.+|||||||+|+|.+... .++..+++|++... +.. +..+.++||||+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~ 55 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLI 55 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccc
Confidence 589999999999999998775 67888999987532 222 4678999999985
No 125
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=1.8e-07 Score=86.73 Aligned_cols=88 Identities=23% Similarity=0.206 Sum_probs=74.5
Q ss_pred hhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC---CCCcHHHHHHhCCCCEE
Q 021210 77 YEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL---STTHPLMDQWLGNRKRI 151 (316)
Q Consensus 77 ~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~---~~~~~~i~~~l~~k~~I 151 (316)
-.|++.++|++.+++.+.+..|. --++||| ..|.++|...+.++|-.|+|+.|.+++ +..|..+.+..+-..++
T Consensus 54 PeEk~rGITIntahveyet~~rhyahVDcPGH-aDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~iv 132 (394)
T COG0050 54 PEEKARGITINTAHVEYETANRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIV 132 (394)
T ss_pred chHhhcCceeccceeEEecCCceEEeccCCCh-HHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEE
Confidence 45888999999999999988886 5589999 899999999999999999999988765 55566666667677889
Q ss_pred EEEEccCCCChHhH
Q 021210 152 LVLNREDMISMADR 165 (316)
Q Consensus 152 lVlNK~DLv~~~~~ 165 (316)
+++||+|+++..++
T Consensus 133 vflnK~Dmvdd~el 146 (394)
T COG0050 133 VFLNKVDMVDDEEL 146 (394)
T ss_pred EEEecccccCcHHH
Confidence 99999999986553
No 126
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=1.2e-07 Score=89.25 Aligned_cols=155 Identities=23% Similarity=0.273 Sum_probs=107.5
Q ss_pred hhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC---CCCcHHHHHHhCCCCEEE
Q 021210 78 EEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL---STTHPLMDQWLGNRKRIL 152 (316)
Q Consensus 78 ~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~---~~~~~~i~~~l~~k~~Il 152 (316)
.|...++|+.++++.+.+..|. =.++||| +.|.++|....++.|..|+||.|.++. +.+|..+++.++-+.+++
T Consensus 97 EEkaRGITIn~aHveYeTa~RhYaH~DCPGH-ADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivv 175 (449)
T KOG0460|consen 97 EEKARGITINAAHVEYETAKRHYAHTDCPGH-ADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVV 175 (449)
T ss_pred hhhhccceEeeeeeeeeccccccccCCCCch-HHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEE
Confidence 3666789999999999999887 5689999 899999999999999999999988765 556777788888889999
Q ss_pred EEEccCCCChHhHHHH-----HHHHHhcC-----ceEEEec---ccccc----chhhhHHHHHHhhhhhhh---------
Q 021210 153 VLNREDMISMADRNAW-----ATYFAKQG-----TKVIFSN---GQLGM----GTMKLSRLAKALASDVNV--------- 206 (316)
Q Consensus 153 VlNK~DLv~~~~~~~~-----~~~~~~~g-----~~vi~iS---a~~g~----gi~~L~~~L~~l~~~~~~--------- 206 (316)
.+||.|+++..+.-+. .+.+...| .++|.=| |..|+ |.+.+.+++..+-..+..
T Consensus 176 fiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~~pF 255 (449)
T KOG0460|consen 176 FINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLDKPF 255 (449)
T ss_pred EEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccccCCCc
Confidence 9999999966543322 23333444 3455544 44553 333344433333221110
Q ss_pred ------------------hhcccCCCccceEEeEeccCCCCcchh
Q 021210 207 ------------------KRRSKGLLPRAVRAGIVGYPNVGKSSL 233 (316)
Q Consensus 207 ------------------~r~~~~~~~~~~~i~ivG~pNvGKSTL 233 (316)
-+-++|..+..-++=++|+.-.=|||.
T Consensus 256 l~pie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lkttv 300 (449)
T KOG0460|consen 256 LLPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLKTTV 300 (449)
T ss_pred eeehhheeeecCCceEEEEEEeecccccCCEEEEeccCcceeeEe
Confidence 022455556666788999887777764
No 127
>PRK15494 era GTPase Era; Provisional
Probab=98.70 E-value=1.9e-07 Score=89.63 Aligned_cols=105 Identities=16% Similarity=0.086 Sum_probs=73.4
Q ss_pred cccccchH-------HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHH
Q 021210 100 VQWYPGHI-------AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~-------~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~ 170 (316)
+-++||.. ..+.+.....+..+|++|+|+|+..++...+..+...+. +.+.++|+||+|+.+. ...+..+
T Consensus 104 ~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-~~~~~~~ 182 (339)
T PRK15494 104 LYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-YLNDIKA 182 (339)
T ss_pred EEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-cHHHHHH
Confidence 44667763 123444556688999999999998876655555554443 5688999999999754 2334444
Q ss_pred HHHhcC--ceEEEeccccccchhhhHHHHHHhhhhhh
Q 021210 171 YFAKQG--TKVIFSNGQLGMGTMKLSRLAKALASDVN 205 (316)
Q Consensus 171 ~~~~~g--~~vi~iSa~~g~gi~~L~~~L~~l~~~~~ 205 (316)
++...+ ..++++||++|.|+++|.+.+....+..+
T Consensus 183 ~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~ 219 (339)
T PRK15494 183 FLTENHPDSLLFPISALSGKNIDGLLEYITSKAKISP 219 (339)
T ss_pred HHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCCC
Confidence 444433 46899999999999999998887665433
No 128
>PRK00089 era GTPase Era; Reviewed
Probab=98.70 E-value=1.9e-07 Score=87.38 Aligned_cols=92 Identities=18% Similarity=0.177 Sum_probs=70.1
Q ss_pred HHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCC-ChHhHHHHHHHHHhc-C-ceEEEeccc
Q 021210 111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI-SMADRNAWATYFAKQ-G-TKVIFSNGQ 185 (316)
Q Consensus 111 ~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv-~~~~~~~~~~~~~~~-g-~~vi~iSa~ 185 (316)
.+.....+..+|++++|+|+..+.+.....+...+. ++|+++|+||+|+. +..+.....+.+.+. + .+++++||+
T Consensus 75 ~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~ 154 (292)
T PRK00089 75 NKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISAL 154 (292)
T ss_pred HHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCC
Confidence 345556789999999999999876666666666654 57999999999998 545555555555442 2 568999999
Q ss_pred cccchhhhHHHHHHhhh
Q 021210 186 LGMGTMKLSRLAKALAS 202 (316)
Q Consensus 186 ~g~gi~~L~~~L~~l~~ 202 (316)
+|.|+++|.+.+....+
T Consensus 155 ~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 155 KGDNVDELLDVIAKYLP 171 (292)
T ss_pred CCCCHHHHHHHHHHhCC
Confidence 99999999988877654
No 129
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.69 E-value=1.9e-07 Score=91.84 Aligned_cols=123 Identities=15% Similarity=0.146 Sum_probs=81.4
Q ss_pred hhccccCCcceEEEeccccc--cccccchH---------HHHH-HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC-
Q 021210 80 ECDWADLDADLYYWTKSLRP--VQWYPGHI---------AKTE-KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG- 146 (316)
Q Consensus 80 ~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~---------~~~~-r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~- 146 (316)
+..+.+.|.-...+...-.. +-++||+. +.+. ......+..+|++|+|+|+..+.+..+..+...+.
T Consensus 202 ~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~ 281 (429)
T TIGR03594 202 DIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILE 281 (429)
T ss_pred CCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH
Confidence 34455555544444322222 56788852 1111 23345789999999999999888776666655543
Q ss_pred -CCCEEEEEEccCCC-ChHhHHHHHHHHHhc-----CceEEEeccccccchhhhHHHHHHhhh
Q 021210 147 -NRKRILVLNREDMI-SMADRNAWATYFAKQ-----GTKVIFSNGQLGMGTMKLSRLAKALAS 202 (316)
Q Consensus 147 -~k~~IlVlNK~DLv-~~~~~~~~~~~~~~~-----g~~vi~iSa~~g~gi~~L~~~L~~l~~ 202 (316)
++|+++|+||+|++ +....++..+.+... +.+++++||++|.|++++.+.+..+..
T Consensus 282 ~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 282 AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999998 443333443333321 257899999999999999888776543
No 130
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.68 E-value=2.4e-08 Score=90.83 Aligned_cols=56 Identities=34% Similarity=0.517 Sum_probs=45.3
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--E-EeCCcEEEEeCCCcccC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--V-RFGKDLEFLDSPGIIPM 275 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~-~~~~~~~liDTPGi~~~ 275 (316)
+++++|.||+|||||+|+|.+.. ..++..|++|.+... + ..+..+.++||||+...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~-~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~ 60 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEG 60 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ccccCCCCccccceEEEEEECCeEEEEEECCCcccc
Confidence 58999999999999999999876 567889999977532 2 22557899999998753
No 131
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.67 E-value=1.1e-07 Score=80.49 Aligned_cols=97 Identities=11% Similarity=0.060 Sum_probs=64.5
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~ 172 (316)
+-++||| .++.......++.+|++++|+|+.++.+.. ...+..++ .+.|+++++||+|+.+.....+..+.+
T Consensus 54 l~Dt~G~-~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~ 132 (167)
T cd04160 54 FWDLGGQ-ESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVF 132 (167)
T ss_pred EEECCCC-hhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHh
Confidence 5567998 445555667789999999999997653211 11222222 257999999999987543222222322
Q ss_pred Hh-------cCceEEEeccccccchhhhHHHH
Q 021210 173 AK-------QGTKVIFSNGQLGMGTMKLSRLA 197 (316)
Q Consensus 173 ~~-------~g~~vi~iSa~~g~gi~~L~~~L 197 (316)
.. .+.+++.+||++|.|++++.+.|
T Consensus 133 ~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l 164 (167)
T cd04160 133 QDKAEEIGRRDCLVLPVSALEGTGVREGIEWL 164 (167)
T ss_pred ccccccccCCceEEEEeeCCCCcCHHHHHHHH
Confidence 21 12468999999999998887665
No 132
>PRK09866 hypothetical protein; Provisional
Probab=98.67 E-value=1.4e-07 Score=96.00 Aligned_cols=100 Identities=15% Similarity=0.059 Sum_probs=74.6
Q ss_pred cccccchHH----HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--C--CCEEEEEEccCCCCh-----HhHH
Q 021210 100 VQWYPGHIA----KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N--RKRILVLNREDMISM-----ADRN 166 (316)
Q Consensus 100 i~~~Pgh~~----~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~--k~~IlVlNK~DLv~~-----~~~~ 166 (316)
+-++||-+. ...+.|.+.+.++|+||+|+|+..+.+..+..+.+.+. + .|+++|+||+|+.+. +...
T Consensus 234 FVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreeddkE~Ll 313 (741)
T PRK09866 234 LLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVR 313 (741)
T ss_pred EEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccchHHHHH
Confidence 557888754 14557788999999999999999887777777777665 3 399999999999752 2333
Q ss_pred HHHHH-HHhcC---ceEEEeccccccchhhhHHHHHH
Q 021210 167 AWATY-FAKQG---TKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 167 ~~~~~-~~~~g---~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
++.+. +.+.+ .+++++||+.|.|++.|.+.+..
T Consensus 314 e~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 314 ALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 33322 22222 36899999999999999988776
No 133
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.66 E-value=2.2e-07 Score=78.45 Aligned_cols=102 Identities=18% Similarity=0.088 Sum_probs=67.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCChHh--HHHHHHHHH--
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD--RNAWATYFA-- 173 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~~~~-- 173 (316)
+-++||+ ..+.......+..+|++++|+|+..+..........++ .++|+++|+||+|+..... ..+....+.
T Consensus 54 iiDtpG~-~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~ 132 (168)
T cd01887 54 FIDTPGH-EAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQ 132 (168)
T ss_pred EEeCCCc-HHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhcc
Confidence 6678998 34544445678899999999999876533222222222 3789999999999974321 111111111
Q ss_pred ---hc--CceEEEeccccccchhhhHHHHHHhhh
Q 021210 174 ---KQ--GTKVIFSNGQLGMGTMKLSRLAKALAS 202 (316)
Q Consensus 174 ---~~--g~~vi~iSa~~g~gi~~L~~~L~~l~~ 202 (316)
.. ...++++|+++|.|+++|.+.+.++..
T Consensus 133 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 133 GEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred ccccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence 11 256899999999999999988776543
No 134
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.65 E-value=1.6e-07 Score=96.25 Aligned_cols=128 Identities=18% Similarity=0.078 Sum_probs=89.8
Q ss_pred CCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CC
Q 021210 72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GN 147 (316)
Q Consensus 72 ~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~ 147 (316)
+.|-...|++.++|+......+...-.+ +-++||| .++..++...++.+|.+++|+|+..+.......+...+ .+
T Consensus 38 ~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh-~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ 116 (594)
T TIGR01394 38 VMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGH-ADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELG 116 (594)
T ss_pred cccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCH-HHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCC
Confidence 6677778999999998876644433333 7789999 77888899999999999999999876543333333332 26
Q ss_pred CCEEEEEEccCCCCh--Hh-HHHHHHHHHhc-------CceEEEecccccc----------chhhhHHHHHHh
Q 021210 148 RKRILVLNREDMISM--AD-RNAWATYFAKQ-------GTKVIFSNGQLGM----------GTMKLSRLAKAL 200 (316)
Q Consensus 148 k~~IlVlNK~DLv~~--~~-~~~~~~~~~~~-------g~~vi~iSa~~g~----------gi~~L~~~L~~l 200 (316)
.|.++|+||+|+.+. .+ .++..+.+.+. .++++++||++|. |+..|.+.+...
T Consensus 117 ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~ 189 (594)
T TIGR01394 117 LKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRH 189 (594)
T ss_pred CCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHh
Confidence 789999999998643 12 23344444322 3468899999996 677776665544
No 135
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.65 E-value=1.6e-07 Score=77.88 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=65.5
Q ss_pred HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEeccccccchh
Q 021210 112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTM 191 (316)
Q Consensus 112 r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~ 191 (316)
+.....+.++|++++|+|+..+.+..+..+......+|+++|+||+|+.+.... .....+.+++.+|++++.|++
T Consensus 72 ~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 72 ERAREAIEEADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLLPDSEL-----LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcCCcccc-----ccccCCCceEEEECCCCCCHH
Confidence 345567889999999999998777766666555568999999999999876543 223334678999999999999
Q ss_pred hhHHHHHHh
Q 021210 192 KLSRLAKAL 200 (316)
Q Consensus 192 ~L~~~L~~l 200 (316)
+|.+.+...
T Consensus 147 ~l~~~l~~~ 155 (157)
T cd04164 147 ELKEALLEL 155 (157)
T ss_pred HHHHHHHHh
Confidence 988876653
No 136
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.65 E-value=5.8e-07 Score=75.62 Aligned_cols=86 Identities=16% Similarity=0.224 Sum_probs=63.4
Q ss_pred HHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCCh--HhHHHHHHHHHh-c----CceEEEecc
Q 021210 114 LKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM--ADRNAWATYFAK-Q----GTKVIFSNG 184 (316)
Q Consensus 114 l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~--~~~~~~~~~~~~-~----g~~vi~iSa 184 (316)
....+..+|++++|+|+..+.+.....+...+ .++|+++++||+|+.+. ...+.+.+.+.+ . ..+++++|+
T Consensus 78 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (174)
T cd01895 78 TLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISA 157 (174)
T ss_pred HHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEec
Confidence 34567899999999999988776655555444 37899999999999866 334444444432 1 256899999
Q ss_pred ccccchhhhHHHHHH
Q 021210 185 QLGMGTMKLSRLAKA 199 (316)
Q Consensus 185 ~~g~gi~~L~~~L~~ 199 (316)
+++.|++++.+.+.+
T Consensus 158 ~~~~~i~~~~~~l~~ 172 (174)
T cd01895 158 LTGQGVDKLFDAIDE 172 (174)
T ss_pred cCCCCHHHHHHHHHH
Confidence 999999998877654
No 137
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=2.3e-08 Score=95.52 Aligned_cols=58 Identities=38% Similarity=0.497 Sum_probs=46.9
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-------------------CCcEEEEeCCCcccC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-------------------GKDLEFLDSPGIIPM 275 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-------------------~~~~~liDTPGi~~~ 275 (316)
.++++|||.||||||||+|+|++.. +.++++|+||.+... +.+ ...+.++|.+|+.+.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 4679999999999999999999887 889999999998421 111 123789999999864
No 138
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.64 E-value=1.1e-07 Score=90.97 Aligned_cols=101 Identities=18% Similarity=0.220 Sum_probs=70.0
Q ss_pred cccccchHH------HHHHHHHHHHhhcCeEEEEEeCCCCCCC-----Cc---HHHHHH---hCCCCEEEEEEccCCCCh
Q 021210 100 VQWYPGHIA------KTEKELKDQLKLMDVVIEVRDARIPLST-----TH---PLMDQW---LGNRKRILVLNREDMISM 162 (316)
Q Consensus 100 i~~~Pgh~~------~~~r~l~~~i~~aDlIl~VvDar~~~~~-----~~---~~i~~~---l~~k~~IlVlNK~DLv~~ 162 (316)
+.++||... ....+..+.++++|++|+|+|+...... .. .++..+ +.++|+++|+||+|+.+.
T Consensus 209 i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~ 288 (329)
T TIGR02729 209 IADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE 288 (329)
T ss_pred EEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence 678898742 2344556678899999999999864111 11 112111 236899999999999876
Q ss_pred HhHHHHHHHHH-hcCceEEEeccccccchhhhHHHHHHh
Q 021210 163 ADRNAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 163 ~~~~~~~~~~~-~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
.+.+++.+.+. +.+.+++++||+++.|+++|.+.+.++
T Consensus 289 ~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~ 327 (329)
T TIGR02729 289 EELAELLKELKKALGKPVFPISALTGEGLDELLYALAEL 327 (329)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHH
Confidence 55555555554 345679999999999999988876543
No 139
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.63 E-value=1.1e-07 Score=80.74 Aligned_cols=88 Identities=17% Similarity=0.193 Sum_probs=60.9
Q ss_pred HHHHHHHhhcCeEEEEEeCCCC-CCCCc-HH----HHHHh---CCCCEEEEEEccCCCChHhHHHHHHHHHhc--CceEE
Q 021210 112 KELKDQLKLMDVVIEVRDARIP-LSTTH-PL----MDQWL---GNRKRILVLNREDMISMADRNAWATYFAKQ--GTKVI 180 (316)
Q Consensus 112 r~l~~~i~~aDlIl~VvDar~~-~~~~~-~~----i~~~l---~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~--g~~vi 180 (316)
+.....+..+|++++|+|+.++ .+..+ .. +.... ..+|+++|+||+|+.+.....++.+.+... +..++
T Consensus 70 ~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 149 (170)
T cd01898 70 HRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVF 149 (170)
T ss_pred HHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEE
Confidence 3444567789999999999876 22111 11 21211 257899999999998776655555444333 46789
Q ss_pred EeccccccchhhhHHHHHH
Q 021210 181 FSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 181 ~iSa~~g~gi~~L~~~L~~ 199 (316)
++|++.+.|++++.+.+.+
T Consensus 150 ~~Sa~~~~gi~~l~~~i~~ 168 (170)
T cd01898 150 PISALTGEGLDELLRKLAE 168 (170)
T ss_pred EEecCCCCCHHHHHHHHHh
Confidence 9999999999998877654
No 140
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.63 E-value=2.7e-08 Score=94.57 Aligned_cols=55 Identities=29% Similarity=0.338 Sum_probs=43.6
Q ss_pred EeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-------------------------CCcEEEEeCCCc
Q 021210 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-------------------------GKDLEFLDSPGI 272 (316)
Q Consensus 220 i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-------------------------~~~~~liDTPGi 272 (316)
|+++|.||||||||+|+|++.. ..++++|+||++... ... ...+.++||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~-~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD-VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC-CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 5799999999999999999876 589999999987432 111 124789999999
Q ss_pred ccC
Q 021210 273 IPM 275 (316)
Q Consensus 273 ~~~ 275 (316)
...
T Consensus 80 v~g 82 (318)
T cd01899 80 VPG 82 (318)
T ss_pred CCC
Confidence 754
No 141
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.62 E-value=3.9e-07 Score=91.27 Aligned_cols=122 Identities=20% Similarity=0.215 Sum_probs=78.0
Q ss_pred ccccCCcceEEEeccc-c-ccccccchHH------HHHHHHHHHHhhcCeEEEEEeCCCCC------CCCc---HHHHHH
Q 021210 82 DWADLDADLYYWTKSL-R-PVQWYPGHIA------KTEKELKDQLKLMDVVIEVRDARIPL------STTH---PLMDQW 144 (316)
Q Consensus 82 ~~~~~d~~~~~~~~~~-~-~i~~~Pgh~~------~~~r~l~~~i~~aDlIl~VvDar~~~------~~~~---~~i~~~ 144 (316)
.+.|++...-.+.-.- + .+.+.||... ....+....++++|++|+|+|+.... ...+ .++..+
T Consensus 190 pfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y 269 (500)
T PRK12296 190 PFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAY 269 (500)
T ss_pred CcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHh
Confidence 4556665544333221 2 2778898532 12234556789999999999996432 1111 123222
Q ss_pred ------------hCCCCEEEEEEccCCCChHhHHHH-HHHHHhcCceEEEeccccccchhhhHHHHHHhhhh
Q 021210 145 ------------LGNRKRILVLNREDMISMADRNAW-ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASD 203 (316)
Q Consensus 145 ------------l~~k~~IlVlNK~DLv~~~~~~~~-~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~~~ 203 (316)
+..+|.|+|+||+|+.+..+..++ .+.+.+.+..++++||+++.|+++|...+.++...
T Consensus 270 ~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 270 APALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred hhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 236899999999999765443333 33455557789999999999999998877666543
No 142
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.62 E-value=3.9e-07 Score=89.90 Aligned_cols=122 Identities=15% Similarity=0.108 Sum_probs=82.1
Q ss_pred hccccCCcceEEEecccc--ccccccchH---------HHHH-HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--
Q 021210 81 CDWADLDADLYYWTKSLR--PVQWYPGHI---------AKTE-KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG-- 146 (316)
Q Consensus 81 e~~~~~d~~~~~~~~~~~--~i~~~Pgh~---------~~~~-r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~-- 146 (316)
..+.|.|.-...|...-. .+-++||+. ..+. ......+..+|++|+|+|+..+.+..+..+..++.
T Consensus 204 ~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~ 283 (435)
T PRK00093 204 IAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEA 283 (435)
T ss_pred CCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc
Confidence 344455543333332222 266788852 2211 23345789999999999999988777766666553
Q ss_pred CCCEEEEEEccCCCChHhHHHHHHHHHhc-----CceEEEeccccccchhhhHHHHHHhhh
Q 021210 147 NRKRILVLNREDMISMADRNAWATYFAKQ-----GTKVIFSNGQLGMGTMKLSRLAKALAS 202 (316)
Q Consensus 147 ~k~~IlVlNK~DLv~~~~~~~~~~~~~~~-----g~~vi~iSa~~g~gi~~L~~~L~~l~~ 202 (316)
++|+++|+||+|+.+....+++.+.+... ..+++++||++|.|++++.+.+.....
T Consensus 284 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 284 GRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999998665544444444321 257899999999999999887766543
No 143
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.61 E-value=5.4e-08 Score=81.70 Aligned_cols=55 Identities=31% Similarity=0.434 Sum_probs=40.0
Q ss_pred EEeEeccCCCCcchhHHhhhcCccccc--CCCCCceeeEEEE--Ee--CCcEEEEeCCCcc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPA--APRPGVTRVLKWV--RF--GKDLEFLDSPGII 273 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~v--s~~pgtT~~~~~~--~~--~~~~~liDTPGi~ 273 (316)
.|+++|.+|||||||+|+|.+...... ...+++|.+.... .. +..+.++||||..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~ 62 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE 62 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH
Confidence 589999999999999999997542222 2346788775432 22 3468899999974
No 144
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.61 E-value=2.4e-07 Score=77.75 Aligned_cols=97 Identities=14% Similarity=0.070 Sum_probs=63.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-------CCCCEEEEEEccCCCChHhHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-------GNRKRILVLNREDMISMADRNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-------~~k~~IlVlNK~DLv~~~~~~~~~~ 170 (316)
+-++||+ .++.......+..+|.+|+|+|+.++.+.. ...+..++ .+.|+++|+||+|+.+.....++.+
T Consensus 49 l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~ 127 (162)
T cd04157 49 AFDMSGQ-GKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQ 127 (162)
T ss_pred EEECCCC-HhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHH
Confidence 5567898 455555567789999999999998764321 11222221 2579999999999975433223322
Q ss_pred HHH--h---cCceEEEeccccccchhhhHHHH
Q 021210 171 YFA--K---QGTKVIFSNGQLGMGTMKLSRLA 197 (316)
Q Consensus 171 ~~~--~---~g~~vi~iSa~~g~gi~~L~~~L 197 (316)
.+. . ....++.+||++|.|++++.+.|
T Consensus 128 ~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l 159 (162)
T cd04157 128 LLGLENIKDKPWHIFASNALTGEGLDEGVQWL 159 (162)
T ss_pred HhCCccccCceEEEEEeeCCCCCchHHHHHHH
Confidence 221 1 11347889999999999987765
No 145
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.61 E-value=2.8e-07 Score=76.92 Aligned_cols=80 Identities=18% Similarity=0.103 Sum_probs=56.4
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCChHhHHHHHHHH-HhcCceEEEeccccccchhhhHH
Q 021210 119 KLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSR 195 (316)
Q Consensus 119 ~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~~~~~~~~~~~-~~~g~~vi~iSa~~g~gi~~L~~ 195 (316)
..+|++++|+|+..+.. ...+...+ .++|+++|+||+|+.+......+.+.+ ...+.+++++|+.+|.|++++.+
T Consensus 73 ~~~d~vi~v~d~~~~~~--~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~ 150 (158)
T cd01879 73 EKPDLIVNVVDATNLER--NLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKD 150 (158)
T ss_pred CCCcEEEEEeeCCcchh--HHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHH
Confidence 58999999999987432 22222222 378999999999997654333333333 33467899999999999999887
Q ss_pred HHHHh
Q 021210 196 LAKAL 200 (316)
Q Consensus 196 ~L~~l 200 (316)
.+..+
T Consensus 151 ~l~~~ 155 (158)
T cd01879 151 AIAEL 155 (158)
T ss_pred HHHHH
Confidence 76654
No 146
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.60 E-value=8.8e-08 Score=78.56 Aligned_cols=55 Identities=38% Similarity=0.562 Sum_probs=44.5
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEeC---CcEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG---KDLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~~---~~~~liDTPGi~ 273 (316)
+||+++|.+|+|||||+|+|.+.. ...+..+++|++... +..+ ..+.++||||..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 61 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE 61 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcc
Confidence 579999999999999999999887 677778888888654 3333 346789999954
No 147
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.60 E-value=5.9e-07 Score=74.72 Aligned_cols=88 Identities=23% Similarity=0.229 Sum_probs=67.8
Q ss_pred HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCC-ChHhHHHHHHHHHhcC--ceEEEecccc
Q 021210 112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI-SMADRNAWATYFAKQG--TKVIFSNGQL 186 (316)
Q Consensus 112 r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv-~~~~~~~~~~~~~~~g--~~vi~iSa~~ 186 (316)
+.....+..+|++++|+|+..+.......+...+. +.|.++|+||+|+. ...+..++.+.+.... .+++.+|+++
T Consensus 74 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 153 (168)
T cd04163 74 KAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALK 153 (168)
T ss_pred HHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEecc
Confidence 34456789999999999999886655556655554 47999999999998 4555566666666544 5789999999
Q ss_pred ccchhhhHHHHHH
Q 021210 187 GMGTMKLSRLAKA 199 (316)
Q Consensus 187 g~gi~~L~~~L~~ 199 (316)
+.|++++.+.+.+
T Consensus 154 ~~~~~~l~~~l~~ 166 (168)
T cd04163 154 GENVDELLEEIVK 166 (168)
T ss_pred CCChHHHHHHHHh
Confidence 9999998887654
No 148
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.59 E-value=9.6e-08 Score=86.47 Aligned_cols=60 Identities=18% Similarity=0.159 Sum_probs=45.2
Q ss_pred EEeEeccCCCCcchhHHhhhcC--cccccCCCCCceeeEEEEEe------CCcEEEEeCCCcccCCCC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKR--RMCPAAPRPGVTRVLKWVRF------GKDLEFLDSPGIIPMRIS 278 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~--~~~~vs~~pgtT~~~~~~~~------~~~~~liDTPGi~~~~~~ 278 (316)
-|+++|.+++|||||+|.|++. ........+.||+.+..... +..+.++||||+......
T Consensus 9 vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~ 76 (224)
T cd01851 9 VVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERG 76 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccC
Confidence 5899999999999999999988 43334445789998643221 256899999999866443
No 149
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.59 E-value=2.6e-08 Score=91.53 Aligned_cols=63 Identities=27% Similarity=0.310 Sum_probs=48.4
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee----EEEEEeCCcEEEEeCCCcccCCCCC
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV----LKWVRFGKDLEFLDSPGIIPMRISD 279 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~----~~~~~~~~~~~liDTPGi~~~~~~~ 279 (316)
.+++|.++|.+|+|||||||+|+......++..+-+|+. .+.+. ++.+.|.||||+-+.+-.|
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~-~~~l~lwDtPG~gdg~~~D 104 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYD-GENLVLWDTPGLGDGKDKD 104 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcc-ccceEEecCCCcccchhhh
Confidence 478899999999999999999998777777766544433 22222 5789999999998765555
No 150
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.59 E-value=2.2e-07 Score=88.99 Aligned_cols=103 Identities=20% Similarity=0.243 Sum_probs=69.4
Q ss_pred cccccchHH------HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHH-------hCCCCEEEEEEccCCCChHhH
Q 021210 100 VQWYPGHIA------KTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQW-------LGNRKRILVLNREDMISMADR 165 (316)
Q Consensus 100 i~~~Pgh~~------~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~i~~~-------l~~k~~IlVlNK~DLv~~~~~ 165 (316)
+.+.||... ....+..+.++++|++|+|+|+.+..+..+. .+... +.++|+++|+||+|+.+..+.
T Consensus 210 i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~ 289 (335)
T PRK12299 210 IADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEE 289 (335)
T ss_pred EEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhH
Confidence 778898642 2344566778999999999999865321111 12111 136899999999999865432
Q ss_pred H-H-HHHHHHhcCceEEEeccccccchhhhHHHHHHhhh
Q 021210 166 N-A-WATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (316)
Q Consensus 166 ~-~-~~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~~ 202 (316)
. + ...++...+..++++||+++.|+++|.+.+.+...
T Consensus 290 ~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 290 REKRAALELAALGGPVFLISAVTGEGLDELLRALWELLE 328 (335)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 2 1 22223344567899999999999999888766543
No 151
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.59 E-value=3.1e-07 Score=77.92 Aligned_cols=98 Identities=14% Similarity=0.053 Sum_probs=66.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh----CCCCEEEEEEccCCCChHhHHHHHHHHHh
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL----GNRKRILVLNREDMISMADRNAWATYFAK 174 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~i~~~l----~~k~~IlVlNK~DLv~~~~~~~~~~~~~~ 174 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+. .+...+ .+.|+++|.||+|+.... ..+..++...
T Consensus 53 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~ 130 (161)
T cd04124 53 FWDTAGQ-ERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV-TQKKFNFAEK 130 (161)
T ss_pred EEeCCCc-hhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH-HHHHHHHHHH
Confidence 3356887 55666666789999999999998776543221 121212 267999999999985432 2223333334
Q ss_pred cCceEEEeccccccchhhhHHHHHH
Q 021210 175 QGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 175 ~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
.+.+++.+||++|.|++++.+.+.+
T Consensus 131 ~~~~~~~~Sa~~~~gv~~l~~~l~~ 155 (161)
T cd04124 131 HNLPLYYVSAADGTNVVKLFQDAIK 155 (161)
T ss_pred cCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 4577899999999999998876654
No 152
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=1.2e-07 Score=94.09 Aligned_cols=132 Identities=18% Similarity=0.112 Sum_probs=95.6
Q ss_pred CCCCCCCcchhhhhhccccCCcceE-EEecc----ccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-H
Q 021210 67 SNNSNGSIEAYEEECDWADLDADLY-YWTKS----LRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L 140 (316)
Q Consensus 67 ~~~~~~~~g~~~e~e~~~~~d~~~~-~~~~~----~~~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~ 140 (316)
..-..+.|-++-|||.++|+....- +|... +-.+.++||| ..+.-+....++-+|-+|+||||..++...-. .
T Consensus 91 ~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH-vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~an 169 (650)
T KOG0462|consen 91 IGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH-VDFSGEVSRSLAACDGALLVVDASQGVQAQTVAN 169 (650)
T ss_pred CchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc-ccccceehehhhhcCceEEEEEcCcCchHHHHHH
Confidence 3356778999999999999887665 44444 2248899999 88888899999999999999999987643221 1
Q ss_pred HHHHh-CCCCEEEEEEccCCCCh--HhHHH-HHHHHHhcCceEEEeccccccchhhhHHHHHH
Q 021210 141 MDQWL-GNRKRILVLNREDMISM--ADRNA-WATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 141 i~~~l-~~k~~IlVlNK~DLv~~--~~~~~-~~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
+...+ .+-.+|.|+||+|+-.. +.+.. ..+.|.....+++.+||+.|.|+++|.+.+-+
T Consensus 170 f~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~ 232 (650)
T KOG0462|consen 170 FYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIR 232 (650)
T ss_pred HHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHh
Confidence 12222 36788999999999633 33222 23334334467999999999999998776544
No 153
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.58 E-value=1.9e-07 Score=80.09 Aligned_cols=97 Identities=11% Similarity=0.110 Sum_probs=64.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~ 172 (316)
+-++||+ .++.......+..+|++++|+|+.++.+.. ...+..++ .+.|+++|+||+|+......++..+.+
T Consensus 62 l~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~ 140 (173)
T cd04154 62 IWDVGGQ-KTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREAL 140 (173)
T ss_pred EEECCCC-HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHh
Confidence 4567888 444445556789999999999998753221 12233322 367999999999997543323333333
Q ss_pred H-----hcCceEEEeccccccchhhhHHHH
Q 021210 173 A-----KQGTKVIFSNGQLGMGTMKLSRLA 197 (316)
Q Consensus 173 ~-----~~g~~vi~iSa~~g~gi~~L~~~L 197 (316)
. ..+.+++.+||++|.|++++.+.+
T Consensus 141 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 170 (173)
T cd04154 141 ELDKISSHHWRIQPCSAVTGEGLLQGIDWL 170 (173)
T ss_pred CccccCCCceEEEeccCCCCcCHHHHHHHH
Confidence 2 223578999999999999887664
No 154
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.57 E-value=4.1e-08 Score=92.38 Aligned_cols=59 Identities=36% Similarity=0.416 Sum_probs=47.8
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe--------------------CCcEEEEeCCCcccC
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--------------------GKDLEFLDSPGIIPM 275 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~--------------------~~~~~liDTPGi~~~ 275 (316)
..++++|||.|||||||++|+|++... .++++|+||.+...-++ ...+.++|.+|+.+.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a-~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKA-GAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCC-CccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 456899999999999999999998875 49999999998532221 124789999999864
No 155
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.54 E-value=4.8e-08 Score=91.27 Aligned_cols=58 Identities=31% Similarity=0.360 Sum_probs=47.7
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEE----EeCCcEEEEeCCCcccCC
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV----RFGKDLEFLDSPGIIPMR 276 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~----~~~~~~~liDTPGi~~~~ 276 (316)
..|++||+||+|||||+|+|.+.+. +++++++||.....- .....+.+-|-|||+...
T Consensus 197 advGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GA 258 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGA 258 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccc
Confidence 4589999999999999999998885 999999999885432 223458999999998653
No 156
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.54 E-value=3.3e-07 Score=89.79 Aligned_cols=90 Identities=24% Similarity=0.297 Sum_probs=71.8
Q ss_pred HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-CCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEecccccc
Q 021210 110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGM 188 (316)
Q Consensus 110 ~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l-~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g~ 188 (316)
..++.++.+++||+||+|+|++.+.+..+..+...+ .++|+++|+||+||.+....... + ...+..++.+|+++|+
T Consensus 286 GIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~~~~~~~~-~--~~~~~~~i~iSa~t~~ 362 (454)
T COG0486 286 GIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKADLVSKIELESE-K--LANGDAIISISAKTGE 362 (454)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechhcccccccchh-h--ccCCCceEEEEecCcc
Confidence 566778889999999999999998888888777733 47899999999999987653322 1 1123468999999999
Q ss_pred chhhhHHHHHHhhh
Q 021210 189 GTMKLSRLAKALAS 202 (316)
Q Consensus 189 gi~~L~~~L~~l~~ 202 (316)
|++.|++.+..+..
T Consensus 363 Gl~~L~~~i~~~~~ 376 (454)
T COG0486 363 GLDALREAIKQLFG 376 (454)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999998887754
No 157
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.53 E-value=3e-07 Score=77.49 Aligned_cols=98 Identities=12% Similarity=0.029 Sum_probs=63.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~ 172 (316)
+-++||+ .++.......++.+|++|+|+|+.++.+.. ...+..++ .++|+++|+||+|+.+.....+..+.+
T Consensus 47 i~Dt~G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~ 125 (158)
T cd04151 47 VWDLGGQ-TSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKL 125 (158)
T ss_pred EEECCCC-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHh
Confidence 5567888 344444456689999999999987643211 12233222 267999999999997533222332222
Q ss_pred H-----hcCceEEEeccccccchhhhHHHHH
Q 021210 173 A-----KQGTKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 173 ~-----~~g~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
. ..+.+++++||++|.|++++.+.+.
T Consensus 126 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 156 (158)
T cd04151 126 GLSELKDRTWSIFKTSAIKGEGLDEGMDWLV 156 (158)
T ss_pred CccccCCCcEEEEEeeccCCCCHHHHHHHHh
Confidence 1 1124689999999999999877653
No 158
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.53 E-value=2.9e-07 Score=77.33 Aligned_cols=98 Identities=17% Similarity=0.100 Sum_probs=63.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~--~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~ 172 (316)
+-++||+ .++.......+..+|++++|+|++++.+. ....+...+ .+.|+++|+||+|+......++....+
T Consensus 48 i~D~~G~-~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~ 126 (160)
T cd04156 48 VWDVGGQ-EKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRF 126 (160)
T ss_pred EEECCCC-HhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHc
Confidence 3446776 44555555678999999999999876422 122233332 367999999999986432222222222
Q ss_pred H------hcCceEEEeccccccchhhhHHHHH
Q 021210 173 A------KQGTKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 173 ~------~~g~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
. +.+.+++++||++|.|++++.+.|.
T Consensus 127 ~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~ 158 (160)
T cd04156 127 KLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLA 158 (160)
T ss_pred CCcccCCCCcEEEEecccccCCChHHHHHHHh
Confidence 1 1224578899999999999877654
No 159
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.52 E-value=5e-08 Score=86.97 Aligned_cols=55 Identities=29% Similarity=0.347 Sum_probs=40.6
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccC------------------------------CCCCceeeEEEEEe---CCcEE
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAA------------------------------PRPGVTRVLKWVRF---GKDLE 265 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs------------------------------~~pgtT~~~~~~~~---~~~~~ 265 (316)
+|+++|.+|+|||||+|+|+......++ ...|+|++.....+ +..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 4899999999999999999865433221 12688988643333 55789
Q ss_pred EEeCCCcc
Q 021210 266 FLDSPGII 273 (316)
Q Consensus 266 liDTPGi~ 273 (316)
|+||||..
T Consensus 81 liDTpG~~ 88 (208)
T cd04166 81 IADTPGHE 88 (208)
T ss_pred EEECCcHH
Confidence 99999974
No 160
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.52 E-value=7.2e-08 Score=90.99 Aligned_cols=56 Identities=36% Similarity=0.510 Sum_probs=47.3
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEe--CCcEEEEeCCCcccC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF--GKDLEFLDSPGIIPM 275 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~--~~~~~liDTPGi~~~ 275 (316)
.|++||+||+|||||||++...+ .+++++|+||.... .++. .+.+.+-|-||++..
T Consensus 161 DVGLVG~PNaGKSTlls~vS~Ak-PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEG 220 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAK-PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEG 220 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcC-CcccCCccccccCcccEEEecCCCcEEEecCcccccc
Confidence 48999999999999999999776 69999999999853 3333 456999999999865
No 161
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.52 E-value=1.5e-07 Score=83.18 Aligned_cols=59 Identities=22% Similarity=0.149 Sum_probs=40.6
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccC----CCCCceeeEEEEEe--CCcEEEEeCCCcccC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAA----PRPGVTRVLKWVRF--GKDLEFLDSPGIIPM 275 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs----~~pgtT~~~~~~~~--~~~~~liDTPGi~~~ 275 (316)
+++|+++|.+|||||||+|+|++......+ ....+|+....+.. ..++.++||||+...
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~ 65 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGST 65 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcc
Confidence 368999999999999999999985432211 12234555444432 246899999999754
No 162
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.51 E-value=7e-07 Score=88.86 Aligned_cols=115 Identities=22% Similarity=0.175 Sum_probs=75.8
Q ss_pred hccccCCcceEEEecccc--ccccccchHH-----H--HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEE
Q 021210 81 CDWADLDADLYYWTKSLR--PVQWYPGHIA-----K--TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRI 151 (316)
Q Consensus 81 e~~~~~d~~~~~~~~~~~--~i~~~Pgh~~-----~--~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~I 151 (316)
..+.|.|.....+.-.-. .+.++||+.. + ..+.....+..+|++++|+|+.++.+..+..+.....++|++
T Consensus 246 ~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~~~~~pii 325 (449)
T PRK05291 246 IAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEELKDKPVI 325 (449)
T ss_pred CCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHhcCCCCcE
Confidence 344555554433322212 2566777621 1 124456678999999999999887655444333334578999
Q ss_pred EEEEccCCCChHhHHHHHHHHHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210 152 LVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 152 lVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
+|+||+|+.+..... ...+..++++||++|.|+++|.+.+.+..
T Consensus 326 iV~NK~DL~~~~~~~------~~~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 326 VVLNKADLTGEIDLE------EENGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred EEEEhhhccccchhh------hccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 999999997654322 22345689999999999999988876654
No 163
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=5.1e-07 Score=84.66 Aligned_cols=101 Identities=19% Similarity=0.179 Sum_probs=79.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCC----CCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHH----HHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP----LSTTHPLMDQWLGNRKRILVLNREDMISMADRNAW----ATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~----~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~----~~~ 171 (316)
+-+.||| +-.+..|...++-.|-+|+|++|..+ .+.+|....+.++.+++|+|=||+||+++++..+- .++
T Consensus 90 fVDaPGH-e~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~AlE~y~qIk~F 168 (415)
T COG5257 90 FVDAPGH-ETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALENYEQIKEF 168 (415)
T ss_pred EeeCCch-HHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHHHHHHHHHHHHHH
Confidence 5688999 66788888899999999999999754 46667777777889999999999999988753332 222
Q ss_pred HHh---cCceEEEeccccccchhhhHHHHHHhh
Q 021210 172 FAK---QGTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 172 ~~~---~g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
.+. .+.+++++||.++.|++.|.+++.+.-
T Consensus 169 vkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I 201 (415)
T COG5257 169 VKGTVAENAPIIPISAQHKANIDALIEAIEKYI 201 (415)
T ss_pred hcccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence 221 235799999999999999999887764
No 164
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.50 E-value=6e-07 Score=75.51 Aligned_cols=98 Identities=12% Similarity=-0.055 Sum_probs=66.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh--CCCCEEEEEEccCCCChHh--HHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISMAD--RNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~ 170 (316)
+-++||+ .++.......+..+|.+++|+|+.++.+.... .+.+.. .+.|+++|.||+|+.+... .+...+
T Consensus 54 i~Dt~G~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~ 132 (164)
T cd04145 54 ILDTAGQ-EEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQE 132 (164)
T ss_pred EEECCCC-cchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHH
Confidence 4567887 55666666778999999999999875432111 111111 2569999999999965421 122233
Q ss_pred HHHhcCceEEEeccccccchhhhHHHHH
Q 021210 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
.....+..++.+||++|.|++++.+.+.
T Consensus 133 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 133 LARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred HHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 3444567889999999999999877654
No 165
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.49 E-value=4.4e-07 Score=77.95 Aligned_cols=97 Identities=12% Similarity=0.003 Sum_probs=62.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~ 172 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+.. ...+.+.+ .+.|+++|.||+|+......++..+++
T Consensus 57 l~Dt~G~-~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~ 135 (168)
T cd04149 57 VWDVGGQ-DKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKL 135 (168)
T ss_pred EEECCCC-HHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHc
Confidence 4457888 555555556789999999999998753221 12232333 247999999999986432222222222
Q ss_pred -----HhcCceEEEeccccccchhhhHHHH
Q 021210 173 -----AKQGTKVIFSNGQLGMGTMKLSRLA 197 (316)
Q Consensus 173 -----~~~g~~vi~iSa~~g~gi~~L~~~L 197 (316)
......++++||++|.|++++.+.|
T Consensus 136 ~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l 165 (168)
T cd04149 136 GLTRIRDRNWYVQPSCATSGDGLYEGLTWL 165 (168)
T ss_pred CCCccCCCcEEEEEeeCCCCCChHHHHHHH
Confidence 1112357889999999998877665
No 166
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.49 E-value=7.7e-07 Score=75.45 Aligned_cols=100 Identities=10% Similarity=-0.017 Sum_probs=66.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhC-----CCCEEEEEEccCCCChH--hHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-----NRKRILVLNREDMISMA--DRNA 167 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~-----~k~~IlVlNK~DLv~~~--~~~~ 167 (316)
+-++||+ ..+.......++.+|.+|+|+|+.++.+..+. .+..... +.|+++|+||+|+.... ..+.
T Consensus 53 ~~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~ 131 (172)
T cd01862 53 IWDTAGQ-ERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKK 131 (172)
T ss_pred EEeCCCh-HHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHH
Confidence 3467887 44555555778999999999999876532211 1122222 57999999999998321 1222
Q ss_pred HHHHHHhcC-ceEEEeccccccchhhhHHHHHHh
Q 021210 168 WATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 168 ~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
...+....+ ..++.+|+++|.|++++.+.+.+.
T Consensus 132 ~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~ 165 (172)
T cd01862 132 AQQWCQSNGNIPYFETSAKEAINVEQAFETIARK 165 (172)
T ss_pred HHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 223334444 678999999999999988776654
No 167
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.49 E-value=1.6e-07 Score=79.42 Aligned_cols=54 Identities=22% Similarity=0.423 Sum_probs=40.4
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe------CCcEEEEeCCCcc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF------GKDLEFLDSPGII 273 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~------~~~~~liDTPGi~ 273 (316)
.|+++|.+|+|||||+|+|.+... .....+++|.+...... +..+.++||||..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~ 61 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNV-AAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHE 61 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccc-ccccCCCeEEeeccEEEecccCCcceEEEEeCCCcH
Confidence 389999999999999999997653 34455677877543222 3468899999974
No 168
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.49 E-value=1.9e-06 Score=75.99 Aligned_cols=97 Identities=20% Similarity=0.259 Sum_probs=65.2
Q ss_pred cccccchHH-------HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHH---hC--CCCEEEEEEccCCCChHhHH
Q 021210 100 VQWYPGHIA-------KTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQW---LG--NRKRILVLNREDMISMADRN 166 (316)
Q Consensus 100 i~~~Pgh~~-------~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~i~~~---l~--~k~~IlVlNK~DLv~~~~~~ 166 (316)
+-++||+.. +..+.+...+..+|++++|+|++++....+. .+..+ +. ++|+++|+||+|+.+.....
T Consensus 93 i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~ 172 (204)
T cd01878 93 LTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE 172 (204)
T ss_pred EeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH
Confidence 445677622 2233344557789999999999987654432 12222 22 57999999999998765433
Q ss_pred HHHHHHHhcCceEEEeccccccchhhhHHHHHH
Q 021210 167 AWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 167 ~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
..+...+.+++++||++|.|++++.+.|..
T Consensus 173 ---~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~ 202 (204)
T cd01878 173 ---ERLEAGRPDAVFISAKTGEGLDELLEAIEE 202 (204)
T ss_pred ---HHhhcCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 223334467899999999999998776543
No 169
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.49 E-value=7.9e-07 Score=75.30 Aligned_cols=80 Identities=18% Similarity=0.137 Sum_probs=53.7
Q ss_pred hcCeEEEEEeCCCCCCC-CcH--HHHHHh----CCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEeccccccchhh
Q 021210 120 LMDVVIEVRDARIPLST-THP--LMDQWL----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMK 192 (316)
Q Consensus 120 ~aDlIl~VvDar~~~~~-~~~--~i~~~l----~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~ 192 (316)
.+|++|+|+|+.+..+. .+. .+...+ .+.|+++|+||+|+.+..+..+..++....+..++++||++|.|+++
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDE 158 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHH
Confidence 46899999999875432 111 122222 26899999999999876554432222222346789999999999999
Q ss_pred hHHHHHH
Q 021210 193 LSRLAKA 199 (316)
Q Consensus 193 L~~~L~~ 199 (316)
+.+.+.+
T Consensus 159 l~~~l~~ 165 (168)
T cd01897 159 VKNKACE 165 (168)
T ss_pred HHHHHHH
Confidence 8876544
No 170
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.48 E-value=9.6e-07 Score=86.31 Aligned_cols=122 Identities=18% Similarity=0.196 Sum_probs=78.7
Q ss_pred ccccCCcceEEEecc-cc--ccccccchHHH------HHHHHHHHHhhcCeEEEEEeCCCCC--CC-C-cHHHHHHh---
Q 021210 82 DWADLDADLYYWTKS-LR--PVQWYPGHIAK------TEKELKDQLKLMDVVIEVRDARIPL--ST-T-HPLMDQWL--- 145 (316)
Q Consensus 82 ~~~~~d~~~~~~~~~-~~--~i~~~Pgh~~~------~~r~l~~~i~~aDlIl~VvDar~~~--~~-~-~~~i~~~l--- 145 (316)
.+.|++...-++... .+ .+.++||.... ...++.+.++++|++++|+|+.... .. . ...+.+.+
T Consensus 190 p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~ 269 (390)
T PRK12298 190 PFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKY 269 (390)
T ss_pred CCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhh
Confidence 455666655554433 12 26788987432 3445667899999999999987221 11 1 11222221
Q ss_pred ----CCCCEEEEEEccCCCChHhHHHHHHHHHh-cC--ceEEEeccccccchhhhHHHHHHhhhh
Q 021210 146 ----GNRKRILVLNREDMISMADRNAWATYFAK-QG--TKVIFSNGQLGMGTMKLSRLAKALASD 203 (316)
Q Consensus 146 ----~~k~~IlVlNK~DLv~~~~~~~~~~~~~~-~g--~~vi~iSa~~g~gi~~L~~~L~~l~~~ 203 (316)
..+|.++|+||+|+.+..+..+..+.+.+ .+ ..++++||+++.|+++|.+.+.++...
T Consensus 270 ~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 270 SPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred hhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 25899999999999876655444444433 23 368999999999999998887766543
No 171
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.48 E-value=5.5e-07 Score=76.49 Aligned_cols=98 Identities=11% Similarity=0.042 Sum_probs=62.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~--~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~ 172 (316)
+-++||+ .++.......++.+|++|+|+|+.+..+. ....+..++ .+.|++++.||+|+.+....++..+.+
T Consensus 48 l~D~~G~-~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~ 126 (159)
T cd04150 48 VWDVGGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKL 126 (159)
T ss_pred EEECCCC-HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHh
Confidence 3446887 45555556778999999999999764321 112233332 247999999999996432222222222
Q ss_pred H-----hcCceEEEeccccccchhhhHHHHH
Q 021210 173 A-----KQGTKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 173 ~-----~~g~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
. ..+..++.+||++|.|++++.+.|.
T Consensus 127 ~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 127 GLHSLRNRNWYIQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred CccccCCCCEEEEEeeCCCCCCHHHHHHHHh
Confidence 1 1123466899999999998876653
No 172
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.48 E-value=1.5e-07 Score=88.31 Aligned_cols=66 Identities=29% Similarity=0.252 Sum_probs=46.7
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE----EEEeCCcEEEEeCCCcccCCCCCHHHHHH
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK----WVRFGKDLEFLDSPGIIPMRISDQAAAIK 285 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~----~~~~~~~~~liDTPGi~~~~~~~~~~~~~ 285 (316)
-|++|||+|+|||||||+|++.. ....+.-+-|.|.. ...-+..+.+.||-||++..+.....++.
T Consensus 180 viavVGYTNaGKsTLikaLT~Aa-l~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ 249 (410)
T KOG0410|consen 180 VIAVVGYTNAGKSTLIKALTKAA-LYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQ 249 (410)
T ss_pred eEEEEeecCccHHHHHHHHHhhh-cCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHH
Confidence 49999999999999999999433 34445555555532 22335668899999999766555555544
No 173
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.48 E-value=6.5e-07 Score=77.08 Aligned_cols=97 Identities=11% Similarity=0.017 Sum_probs=63.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~ 172 (316)
+-+.||+ .++.+.....+..+|++++|+|+.++.... ...+..++ .+.|+++++||+|+......++..+.+
T Consensus 63 l~D~~G~-~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l 141 (174)
T cd04153 63 MWDIGGQ-ESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESL 141 (174)
T ss_pred EEECCCC-HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHh
Confidence 4457887 445555556789999999999998653221 12233333 247999999999986532222222222
Q ss_pred H-----hcCceEEEeccccccchhhhHHHH
Q 021210 173 A-----KQGTKVIFSNGQLGMGTMKLSRLA 197 (316)
Q Consensus 173 ~-----~~g~~vi~iSa~~g~gi~~L~~~L 197 (316)
. ..+..++++||++|.|++++.+.|
T Consensus 142 ~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l 171 (174)
T cd04153 142 GLTSIRDHTWHIQGCCALTGEGLPEGLDWI 171 (174)
T ss_pred CcccccCCceEEEecccCCCCCHHHHHHHH
Confidence 1 223468899999999999887765
No 174
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.47 E-value=2.2e-07 Score=78.09 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=39.9
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEeCC---cEEEEeCCCcc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFGK---DLEFLDSPGII 273 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~~~---~~~liDTPGi~ 273 (316)
||+++|.+|||||||+|+|++.+. ..+..|++|.+... +..+. .+.++||||-.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~ 60 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTF-DNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQE 60 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CccCCCceeeeEEEEEEEECCEEEEEEEEECCCcH
Confidence 689999999999999999998764 34556777766432 22222 37899999953
No 175
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.46 E-value=9.2e-07 Score=74.31 Aligned_cols=98 Identities=11% Similarity=0.003 Sum_probs=67.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-H----HHHHhCCCCEEEEEEccCCCChHh--HHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWLGNRKRILVLNREDMISMAD--RNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~----i~~~l~~k~~IlVlNK~DLv~~~~--~~~~~~~~ 172 (316)
+-++||+ .++.......++.+|.+++|+|+.++.+.... . +.....+.|+++|.||+|+.+..+ .++..+..
T Consensus 55 i~D~~G~-~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~ 133 (162)
T cd04106 55 LWDTAGQ-EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALA 133 (162)
T ss_pred EeeCCch-HHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHH
Confidence 3456887 55666666788999999999998765432211 1 111123679999999999975432 12233344
Q ss_pred HhcCceEEEeccccccchhhhHHHHH
Q 021210 173 AKQGTKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 173 ~~~g~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
...+.+++.+|+++|.|++++.+.+.
T Consensus 134 ~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 134 KRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred HHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 45677889999999999998877654
No 176
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.45 E-value=1e-06 Score=73.98 Aligned_cols=99 Identities=11% Similarity=-0.000 Sum_probs=68.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HH-HHH---h-CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LM-DQW---L-GNRKRILVLNREDMISMAD--RNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~i-~~~---l-~~k~~IlVlNK~DLv~~~~--~~~~~~~ 171 (316)
+-++||+ .++.......++.+|++++|+|++++.+.... .+ ..+ . .+.|+++|.||+|+....+ .+...+.
T Consensus 53 l~D~~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~ 131 (164)
T smart00175 53 IWDTAGQ-ERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAF 131 (164)
T ss_pred EEECCCh-HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHH
Confidence 4567887 55666667788999999999999876543221 11 111 1 2579999999999875321 2223333
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHH
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
....+.+++.+|+++|.|++++.+.+.+
T Consensus 132 ~~~~~~~~~e~Sa~~~~~i~~l~~~i~~ 159 (164)
T smart00175 132 AEEHGLPFFETSAKTNTNVEEAFEELAR 159 (164)
T ss_pred HHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 4455678999999999999998877654
No 177
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.45 E-value=1.3e-06 Score=81.36 Aligned_cols=114 Identities=13% Similarity=0.018 Sum_probs=77.4
Q ss_pred CCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--C
Q 021210 72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N 147 (316)
Q Consensus 72 ~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~ 147 (316)
.+|-...|++.+++++.....|.-.-.. +-++||| .++..++...+..+|++|+|+|+..+.......+.+.+. +
T Consensus 38 ~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~-~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~ 116 (270)
T cd01886 38 TMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGH-VDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYN 116 (270)
T ss_pred ccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCc-HHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3555556888889999877766544333 6789999 567788889999999999999999877555445544433 6
Q ss_pred CCEEEEEEccCCCChH--h-HHHHHHHHHhcC-ceEEEecccc
Q 021210 148 RKRILVLNREDMISMA--D-RNAWATYFAKQG-TKVIFSNGQL 186 (316)
Q Consensus 148 k~~IlVlNK~DLv~~~--~-~~~~~~~~~~~g-~~vi~iSa~~ 186 (316)
+|+++++||+|+.... . .++..+.+...- ...+++|+..
T Consensus 117 ~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~Pisa~~ 159 (270)
T cd01886 117 VPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLPIGEED 159 (270)
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEeccccCC
Confidence 8999999999987432 2 122222222111 2356787753
No 178
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.45 E-value=1.2e-06 Score=73.96 Aligned_cols=99 Identities=14% Similarity=0.046 Sum_probs=65.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh----CCCCEEEEEEccCCCChHhHH--HHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL----GNRKRILVLNREDMISMADRN--AWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-~~i~~~l----~~k~~IlVlNK~DLv~~~~~~--~~~~~~ 172 (316)
+-++||+ .++.......++++|++++|+|..++.+..+ ..+...+ .+.|.++|.||+|+.+..+.. ....+.
T Consensus 56 i~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 134 (164)
T cd04101 56 IFDSAGQ-ELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFA 134 (164)
T ss_pred EEECCCH-HHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHH
Confidence 3356776 5555656677899999999999876532211 1111111 257999999999997653221 122223
Q ss_pred HhcCceEEEeccccccchhhhHHHHHH
Q 021210 173 AKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 173 ~~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
...+..++.+||++|.|++++.+.+.+
T Consensus 135 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 161 (164)
T cd04101 135 QANQLKFFKTSALRGVGYEEPFESLAR 161 (164)
T ss_pred HHcCCeEEEEeCCCCCChHHHHHHHHH
Confidence 344567899999999999998876544
No 179
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.45 E-value=5.1e-07 Score=76.72 Aligned_cols=99 Identities=19% Similarity=0.212 Sum_probs=64.2
Q ss_pred cccccchHHH------HHHHHHHHHhhcCeEEEEEeCCCCC-----CCCc------HHHHHH--------hCCCCEEEEE
Q 021210 100 VQWYPGHIAK------TEKELKDQLKLMDVVIEVRDARIPL-----STTH------PLMDQW--------LGNRKRILVL 154 (316)
Q Consensus 100 i~~~Pgh~~~------~~r~l~~~i~~aDlIl~VvDar~~~-----~~~~------~~i~~~--------l~~k~~IlVl 154 (316)
+-++||+... ..+++...+..+|++++|+|+.++. ...+ ..+... +.++|+++|+
T Consensus 48 i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 127 (176)
T cd01881 48 VADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVL 127 (176)
T ss_pred EEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEE
Confidence 4556776221 1224456678899999999998763 1111 111111 2368999999
Q ss_pred EccCCCChHhHHHHH--HHHHhcCceEEEeccccccchhhhHHHHH
Q 021210 155 NREDMISMADRNAWA--TYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 155 NK~DLv~~~~~~~~~--~~~~~~g~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
||+|+.+......+. ......+..++++|++++.|++++.+.+.
T Consensus 128 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~ 173 (176)
T cd01881 128 NKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIY 173 (176)
T ss_pred EchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHH
Confidence 999998766555441 22222346789999999999998877654
No 180
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.44 E-value=2.4e-06 Score=74.31 Aligned_cols=83 Identities=19% Similarity=0.234 Sum_probs=59.7
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHH----HHHHhcCceEEEeccccccchhh
Q 021210 119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWA----TYFAKQGTKVIFSNGQLGMGTMK 192 (316)
Q Consensus 119 ~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~----~~~~~~g~~vi~iSa~~g~gi~~ 192 (316)
+.++++++|+|+..+....+..+.+++. +.|+++++||+|+.+..+.+... +.+......++++||+++.|+++
T Consensus 105 ~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~ 184 (196)
T PRK00454 105 ENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDE 184 (196)
T ss_pred ccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHH
Confidence 3457899999998876655545555443 67899999999998765433322 23332246789999999999999
Q ss_pred hHHHHHHhh
Q 021210 193 LSRLAKALA 201 (316)
Q Consensus 193 L~~~L~~l~ 201 (316)
+.+.+..+.
T Consensus 185 l~~~i~~~~ 193 (196)
T PRK00454 185 LRAAIAKWL 193 (196)
T ss_pred HHHHHHHHh
Confidence 998887654
No 181
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.44 E-value=1.9e-06 Score=70.53 Aligned_cols=88 Identities=18% Similarity=0.206 Sum_probs=64.6
Q ss_pred HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH--hCCCCEEEEEEccCCCChHhHHHHHH-----HHHhcCceEEEecc
Q 021210 112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW--LGNRKRILVLNREDMISMADRNAWAT-----YFAKQGTKVIFSNG 184 (316)
Q Consensus 112 r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~--l~~k~~IlVlNK~DLv~~~~~~~~~~-----~~~~~g~~vi~iSa 184 (316)
+.+...+..+|++++|+|+..+.......+... ..+.|.++|+||+|+........+.+ .....+.+++++|+
T Consensus 67 ~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa 146 (163)
T cd00880 67 ELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSA 146 (163)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEee
Confidence 456677899999999999998776665542222 24789999999999998766555421 11122367899999
Q ss_pred ccccchhhhHHHHHH
Q 021210 185 QLGMGTMKLSRLAKA 199 (316)
Q Consensus 185 ~~g~gi~~L~~~L~~ 199 (316)
+++.|++++.+.+..
T Consensus 147 ~~~~~v~~l~~~l~~ 161 (163)
T cd00880 147 LTGEGIDELREALIE 161 (163)
T ss_pred eccCCHHHHHHHHHh
Confidence 999999998877654
No 182
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.44 E-value=1.2e-06 Score=89.78 Aligned_cols=146 Identities=16% Similarity=0.084 Sum_probs=89.7
Q ss_pred ccCCCCCeeEEecCC-C------CCcCCCCCCCCCCCcchhhhhhccccCCcceEEEecccc---ccccccchHHHHHHH
Q 021210 44 SLSSSAPIIQTVGGK-Q------SSWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLR---PVQWYPGHIAKTEKE 113 (316)
Q Consensus 44 ~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~---~i~~~Pgh~~~~~r~ 113 (316)
.+...+|.+.|+|.. . ....+..+ .. .+..++|.+.....+...-. .+-++||| .++...
T Consensus 82 ~~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v-----~~----~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGh-e~F~~~ 151 (587)
T TIGR00487 82 LLVERPPVVTIMGHVDHGKTSLLDSIRKTKV-----AQ----GEAGGITQHIGAYHVENEDGKMITFLDTPGH-EAFTSM 151 (587)
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHhCCc-----cc----ccCCceeecceEEEEEECCCcEEEEEECCCC-cchhhH
Confidence 355677899999872 2 12222211 11 12234566655443332211 26789999 566666
Q ss_pred HHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCCh--HhHHHHHHHH----HhcC--ceEEEec
Q 021210 114 LKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM--ADRNAWATYF----AKQG--TKVIFSN 183 (316)
Q Consensus 114 l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~--~~~~~~~~~~----~~~g--~~vi~iS 183 (316)
....+..+|++++|+|+.++......+..... .+.|+++++||+|+.+. ++...+...+ ...+ ..++++|
T Consensus 152 r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iS 231 (587)
T TIGR00487 152 RARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVS 231 (587)
T ss_pred HHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEE
Confidence 66789999999999999887644333333332 36799999999999642 2222222111 0111 3589999
Q ss_pred cccccchhhhHHHHHH
Q 021210 184 GQLGMGTMKLSRLAKA 199 (316)
Q Consensus 184 a~~g~gi~~L~~~L~~ 199 (316)
|++|.|+++|.+.+..
T Consensus 232 AktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 232 ALTGDGIDELLDMILL 247 (587)
T ss_pred CCCCCChHHHHHhhhh
Confidence 9999999999887654
No 183
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.44 E-value=9.6e-07 Score=73.01 Aligned_cols=99 Identities=8% Similarity=-0.007 Sum_probs=66.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~ 172 (316)
+.++||+ .++.+.....+..+|++++|+|+.+..... ...+..++ .++|+++|+||+|+.+.....+..+.+
T Consensus 48 ~~D~~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~ 126 (159)
T cd04159 48 VWDLGGQ-PRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQM 126 (159)
T ss_pred EEECCCC-HhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHh
Confidence 5567887 556666677889999999999997643211 11222222 257999999999987654433333332
Q ss_pred H-----hcCceEEEeccccccchhhhHHHHHH
Q 021210 173 A-----KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 173 ~-----~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
. .....++.+|+++|.|++++.+.+.+
T Consensus 127 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 127 NLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred CcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 1 11246789999999999998877654
No 184
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.43 E-value=1.1e-06 Score=75.36 Aligned_cols=99 Identities=11% Similarity=-0.004 Sum_probs=66.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh--CCCCEEEEEEccCCCChHh--HHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISMAD--RNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~ 170 (316)
+-++||+ .++.......++.+|++++|+|+.++.+..+. .+.... .+.|+++|.||+|+.+... .++..+
T Consensus 67 i~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~ 145 (180)
T cd04127 67 LWDTAGQ-ERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKA 145 (180)
T ss_pred EEeCCCh-HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHH
Confidence 4456887 56666667788999999999999865433221 111111 2568999999999975321 122233
Q ss_pred HHHhcCceEEEeccccccchhhhHHHHHH
Q 021210 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
+..+.+.+++.+||++|.|++++.+.+.+
T Consensus 146 ~~~~~~~~~~e~Sak~~~~v~~l~~~l~~ 174 (180)
T cd04127 146 LADKYGIPYFETSAATGTNVEKAVERLLD 174 (180)
T ss_pred HHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 34445678899999999999998877654
No 185
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.43 E-value=2.9e-07 Score=88.83 Aligned_cols=58 Identities=34% Similarity=0.366 Sum_probs=47.0
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-C-----------------CcEEEEeCCCcccC
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-G-----------------KDLEFLDSPGIIPM 275 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~-----------------~~~~liDTPGi~~~ 275 (316)
+++++||.||||||||+|+|++.+...++++|+||.+... +.. + ..+.++|.||+...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g 80 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG 80 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence 5799999999999999999998885488999999988532 222 2 24789999999864
No 186
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.43 E-value=1.3e-06 Score=75.58 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=52.9
Q ss_pred hcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhH----HHHHHHHHhcC--ceEEEeccccccchh
Q 021210 120 LMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADR----NAWATYFAKQG--TKVIFSNGQLGMGTM 191 (316)
Q Consensus 120 ~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~----~~~~~~~~~~g--~~vi~iSa~~g~gi~ 191 (316)
.+|.+++|+|++.+.+..+..+.+++. ++|+++|+||+|+.+..+. +++.+.+...+ .+++++||++|+|++
T Consensus 100 ~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 100 NLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred hhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 468999999999877766665555553 6799999999999865432 33444444433 379999999999974
No 187
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.42 E-value=1.2e-06 Score=92.25 Aligned_cols=147 Identities=14% Similarity=0.090 Sum_probs=90.5
Q ss_pred ccCCCCCeeEEecC-CCC------CcCCCCCCCCCCCcchhhhhhccccCCcceEEEecccc--ccccccchHHHHHHHH
Q 021210 44 SLSSSAPIIQTVGG-KQS------SWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKEL 114 (316)
Q Consensus 44 ~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~--~i~~~Pgh~~~~~r~l 114 (316)
.+...+|.|.|+|. ..+ ...++.+ ..| +..++|.+...+.+...-. .+-++||| ..+....
T Consensus 285 ~~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v-----~~~----e~~GIT~~iga~~v~~~~~~ItfiDTPGh-e~F~~m~ 354 (787)
T PRK05306 285 DLVPRPPVVTIMGHVDHGKTSLLDAIRKTNV-----AAG----EAGGITQHIGAYQVETNGGKITFLDTPGH-EAFTAMR 354 (787)
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHhCCc-----ccc----ccCceeeeccEEEEEECCEEEEEEECCCC-ccchhHH
Confidence 34667888888886 221 1111111 111 2234555555444332222 26688999 5676666
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCCh--HhHHHHHHHH----HhcC--ceEEEecc
Q 021210 115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM--ADRNAWATYF----AKQG--TKVIFSNG 184 (316)
Q Consensus 115 ~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~--~~~~~~~~~~----~~~g--~~vi~iSa 184 (316)
...+..+|++|+|+|+.++......+...+. .+.|+|+++||+|+... ......+..+ ...| ..++++||
T Consensus 355 ~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSA 434 (787)
T PRK05306 355 ARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSA 434 (787)
T ss_pred HhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeC
Confidence 6788999999999999987644333333332 36899999999999642 2221111111 1122 56899999
Q ss_pred ccccchhhhHHHHHHh
Q 021210 185 QLGMGTMKLSRLAKAL 200 (316)
Q Consensus 185 ~~g~gi~~L~~~L~~l 200 (316)
++|.|+++|.+.+...
T Consensus 435 ktG~GI~eLle~I~~~ 450 (787)
T PRK05306 435 KTGEGIDELLEAILLQ 450 (787)
T ss_pred CCCCCchHHHHhhhhh
Confidence 9999999998877644
No 188
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.42 E-value=1.2e-06 Score=74.24 Aligned_cols=99 Identities=12% Similarity=0.061 Sum_probs=66.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HH---HHHh-CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LM---DQWL-GNRKRILVLNREDMISMAD--RNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i---~~~l-~~k~~IlVlNK~DLv~~~~--~~~~~~~ 171 (316)
+-++||+ .++.......+..+|.+|+|+|+.++.+..+. .+ ..+. .+.|+++|.||+|+..... .++...+
T Consensus 55 i~D~~G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~ 133 (166)
T cd01869 55 IWDTAGQ-ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEF 133 (166)
T ss_pred EEECCCc-HhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHH
Confidence 4467998 45666666778999999999999765422111 11 1111 2579999999999865432 1222233
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHH
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
....+.+++++||++|.|++++.+.+.+
T Consensus 134 ~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 134 ADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred HHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 3445678999999999999998776543
No 189
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=1.3e-06 Score=86.81 Aligned_cols=101 Identities=16% Similarity=0.101 Sum_probs=72.0
Q ss_pred cccccchHHHHHHHHH-HHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHHHHHhcC
Q 021210 100 VQWYPGHIAKTEKELK-DQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQG 176 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~-~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g 176 (316)
+-++||| + ++-.|+ ...+-+|++++|||+.+++.....+-.+.++ +-|+++++||+|..+... ......+.+.|
T Consensus 59 FiDTPGH-e-AFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np-~~v~~el~~~g 135 (509)
T COG0532 59 FIDTPGH-E-AFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANP-DKVKQELQEYG 135 (509)
T ss_pred EEcCCcH-H-HHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCH-HHHHHHHHHcC
Confidence 6689999 3 344455 6688999999999999988665544444443 789999999999975432 11222233333
Q ss_pred ---------ceEEEeccccccchhhhHHHHHHhhhh
Q 021210 177 ---------TKVIFSNGQLGMGTMKLSRLAKALASD 203 (316)
Q Consensus 177 ---------~~vi~iSa~~g~gi~~L~~~L~~l~~~ 203 (316)
..++++||++|+|+.+|...+.-+++.
T Consensus 136 l~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~aev 171 (509)
T COG0532 136 LVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAEV 171 (509)
T ss_pred CCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHHH
Confidence 358899999999999999887665543
No 190
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.42 E-value=1.7e-07 Score=80.31 Aligned_cols=77 Identities=21% Similarity=0.151 Sum_probs=54.4
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCChHhHH-HHHHHHHhcCceEEEeccccccchhhhHH
Q 021210 119 KLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRN-AWATYFAKQGTKVIFSNGQLGMGTMKLSR 195 (316)
Q Consensus 119 ~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~~~~~-~~~~~~~~~g~~vi~iSa~~g~gi~~L~~ 195 (316)
++.|+++.|+|++.. .++..+...+ .++|+++|+||+|++.+.... .....-+.+|.+++++||++++|+++|++
T Consensus 77 ~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~ 154 (156)
T PF02421_consen 77 EKPDLIIVVVDATNL--ERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELKD 154 (156)
T ss_dssp TSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHH
T ss_pred cCCCEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHHh
Confidence 689999999999862 3344443333 389999999999987654321 11122234578999999999999999887
Q ss_pred HH
Q 021210 196 LA 197 (316)
Q Consensus 196 ~L 197 (316)
.+
T Consensus 155 ~I 156 (156)
T PF02421_consen 155 AI 156 (156)
T ss_dssp HH
T ss_pred hC
Confidence 53
No 191
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.42 E-value=7.8e-07 Score=76.16 Aligned_cols=99 Identities=14% Similarity=0.089 Sum_probs=63.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHhC-----CCCEEEEEEccCCCChHhHHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~--~~~~i~~~l~-----~k~~IlVlNK~DLv~~~~~~~~~~~~ 172 (316)
+-++||+ .++.......+..+|.+++|+|+.++.+. ....+..++. +.|+++|.||+|+......++..+++
T Consensus 47 l~Dt~G~-~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~ 125 (169)
T cd04158 47 IWDVGGK-HKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELL 125 (169)
T ss_pred EEECCCC-hhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHh
Confidence 4467887 44555556778999999999999765322 2223333332 46899999999996432222222222
Q ss_pred H--hc----CceEEEeccccccchhhhHHHHHH
Q 021210 173 A--KQ----GTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 173 ~--~~----g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
. +. ...++.+||++|.|++++.+.|.+
T Consensus 126 ~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~ 158 (169)
T cd04158 126 SLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSR 158 (169)
T ss_pred CCccccCCCcEEEEeCcCCCCCCHHHHHHHHHH
Confidence 1 11 125677899999999998877653
No 192
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.40 E-value=1.3e-06 Score=75.98 Aligned_cols=100 Identities=11% Similarity=0.005 Sum_probs=61.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~ 172 (316)
+-++||+ .++.......++.+|++++|+|+.++.+..+ ..+..+. .++|+++|+||+|+......++..+.+
T Consensus 56 l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~ 134 (183)
T cd04152 56 FWDVGGQ-EKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLL 134 (183)
T ss_pred EEECCCc-HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHh
Confidence 3446777 4444444456789999999999987532211 1122221 268999999999986432222222211
Q ss_pred --Hhc----CceEEEeccccccchhhhHHHHHHh
Q 021210 173 --AKQ----GTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 173 --~~~----g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
... +..++++||++|.|++++.+.+.+.
T Consensus 135 ~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~ 168 (183)
T cd04152 135 ALHELSASTPWHVQPACAIIGEGLQEGLEKLYEM 168 (183)
T ss_pred CccccCCCCceEEEEeecccCCCHHHHHHHHHHH
Confidence 111 2357889999999999887765543
No 193
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.40 E-value=1.1e-06 Score=73.75 Aligned_cols=98 Identities=12% Similarity=0.007 Sum_probs=64.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~ 172 (316)
+-++||+ .++.......+..+|++++|+|+..+.+..+ ..+...+ .+.|+++|+||+|+......++..+.+
T Consensus 47 i~D~~G~-~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~ 125 (158)
T cd00878 47 VWDVGGQ-DKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKL 125 (158)
T ss_pred EEECCCC-hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhh
Confidence 4557888 4444555567799999999999987632211 1222222 267999999999998644222332322
Q ss_pred Hh-----cCceEEEeccccccchhhhHHHHH
Q 021210 173 AK-----QGTKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 173 ~~-----~g~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
.. ...+++.+|+++|.|++++.+.|.
T Consensus 126 ~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~ 156 (158)
T cd00878 126 GLEKILGRRWHIQPCSAVTGDGLDEGLDWLL 156 (158)
T ss_pred ChhhccCCcEEEEEeeCCCCCCHHHHHHHHh
Confidence 21 124688999999999998876653
No 194
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.40 E-value=2.2e-07 Score=81.43 Aligned_cols=56 Identities=27% Similarity=0.439 Sum_probs=40.4
Q ss_pred eEEeEeccCCCCcchhHHhhhcC------cccccCCCCCceeeEEEE--Ee---------------CCcEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKR------RMCPAAPRPGVTRVLKWV--RF---------------GKDLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~------~~~~vs~~pgtT~~~~~~--~~---------------~~~~~liDTPGi~ 273 (316)
++|+++|.+|+|||||+|+|.+. .....+..+|+|.+.... .. +..+.++||||..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 79 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA 79 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH
Confidence 36999999999999999999863 222334457888875321 11 3368899999974
No 195
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.40 E-value=3.6e-07 Score=75.43 Aligned_cols=56 Identities=23% Similarity=0.335 Sum_probs=38.6
Q ss_pred eEEeEeccCCCCcchhHHhhhcCccccc-CCCCCceeeEEEEEeC---CcEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFG---KDLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~v-s~~pgtT~~~~~~~~~---~~~~liDTPGi~ 273 (316)
+||+++|.+|+|||||+|+|.+...... .+..+.+.....+... ..+.++||||..
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE 60 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChH
Confidence 3699999999999999999997764443 2223333333333332 347899999974
No 196
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.40 E-value=1.6e-06 Score=72.87 Aligned_cols=98 Identities=16% Similarity=0.046 Sum_probs=65.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh------CCCCEEEEEEccCCCChH--hHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL------GNRKRILVLNREDMISMA--DRN 166 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l------~~k~~IlVlNK~DLv~~~--~~~ 166 (316)
+-++||+ .++.......+..+|++|+|+|.+++.+..+ ..+.+.. .+.|+++|.||+|+.+.. ..+
T Consensus 53 i~Dt~G~-~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 131 (168)
T cd04119 53 FFDLSGH-PEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSED 131 (168)
T ss_pred EEECCcc-HHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHH
Confidence 4467887 4555555567899999999999987533211 1122222 246899999999997322 122
Q ss_pred HHHHHHHhcCceEEEeccccccchhhhHHHHH
Q 021210 167 AWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 167 ~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
+..++..+.+..++.+||++|.|++++.+.+.
T Consensus 132 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 163 (168)
T cd04119 132 EGRLWAESKGFKYFETSACTGEGVNEMFQTLF 163 (168)
T ss_pred HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 23333444567889999999999999887654
No 197
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.40 E-value=1.8e-06 Score=90.21 Aligned_cols=154 Identities=16% Similarity=0.086 Sum_probs=91.9
Q ss_pred ccCCCCCeeEEecCCCCCcCCCCCCCCCCCcchhh-hhhccccCCcceEEEecc----cc--ccccccchHHHHHHHHHH
Q 021210 44 SLSSSAPIIQTVGGKQSSWHGGNSNNSNGSIEAYE-EECDWADLDADLYYWTKS----LR--PVQWYPGHIAKTEKELKD 116 (316)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-e~e~~~~~d~~~~~~~~~----~~--~i~~~Pgh~~~~~r~l~~ 116 (316)
.+...+|.|.|+|...--. +.-+..+..+... .+..++|.+...+.+... .. .+-++||| ..+...+..
T Consensus 239 ~l~~r~p~V~IvGhvdvGK---TSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh-e~F~~mr~r 314 (742)
T CHL00189 239 NSINRPPIVTILGHVDHGK---TTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH-EAFSSMRSR 314 (742)
T ss_pred hhcccCCEEEEECCCCCCH---HHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcH-HHHHHHHHH
Confidence 3556778899988721100 0000111111111 222345555544433221 12 26688999 667777778
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCChH--hHHHHHHHH----HhcC--ceEEEecccc
Q 021210 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA--DRNAWATYF----AKQG--TKVIFSNGQL 186 (316)
Q Consensus 117 ~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~~--~~~~~~~~~----~~~g--~~vi~iSa~~ 186 (316)
.+..+|++|+|+|+.++......+....+ .+.|+|+++||+|+.... +....+..+ ...| ..++++||++
T Consensus 315 g~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt 394 (742)
T CHL00189 315 GANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQ 394 (742)
T ss_pred HHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence 89999999999999887544333333333 267999999999997532 222222111 1123 5689999999
Q ss_pred ccchhhhHHHHHHhh
Q 021210 187 GMGTMKLSRLAKALA 201 (316)
Q Consensus 187 g~gi~~L~~~L~~l~ 201 (316)
|.|+++|.+.+..+.
T Consensus 395 G~GIdeLle~I~~l~ 409 (742)
T CHL00189 395 GTNIDKLLETILLLA 409 (742)
T ss_pred CCCHHHHHHhhhhhh
Confidence 999999988876654
No 198
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.40 E-value=1.8e-06 Score=75.51 Aligned_cols=102 Identities=10% Similarity=0.043 Sum_probs=67.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhC-CCCEEEEEEccCCCChHh--HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG-NRKRILVLNREDMISMAD--RNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~-~k~~IlVlNK~DLv~~~~--~~~~~~~ 171 (316)
+-++||+ .++.......+..+|++|+|+|+....+..+ ..+..... ..|+++|.||+|+....+ .++..+.
T Consensus 54 i~Dt~G~-~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l 132 (191)
T cd04112 54 IWDTAGQ-ERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERL 132 (191)
T ss_pred EEeCCCc-HHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHH
Confidence 4478997 4455555567889999999999976532211 11222222 568999999999964321 1222233
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHHhhh
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~~ 202 (316)
....+..++.+||++|.|+++|...+.+...
T Consensus 133 ~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~ 163 (191)
T cd04112 133 AKEYGVPFMETSAKTGLNVELAFTAVAKELK 163 (191)
T ss_pred HHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3445678899999999999999887765543
No 199
>PRK13768 GTPase; Provisional
Probab=98.40 E-value=1.3e-06 Score=80.56 Aligned_cols=100 Identities=20% Similarity=0.231 Sum_probs=67.5
Q ss_pred cccchHHH-----HHHHHHHHHhh--cCeEEEEEeCCCCCCCCcHHHHHH-------hCCCCEEEEEEccCCCChHhHHH
Q 021210 102 WYPGHIAK-----TEKELKDQLKL--MDVVIEVRDARIPLSTTHPLMDQW-------LGNRKRILVLNREDMISMADRNA 167 (316)
Q Consensus 102 ~~Pgh~~~-----~~r~l~~~i~~--aDlIl~VvDar~~~~~~~~~i~~~-------l~~k~~IlVlNK~DLv~~~~~~~ 167 (316)
++||.+.- ..+.+.+.+.. ++++++|+|++.+....+.....+ ..++|+++|+||+|+++..+.+.
T Consensus 103 d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~~~~~~ 182 (253)
T PRK13768 103 DTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSEEELER 182 (253)
T ss_pred eCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCchhHHH
Confidence 45665332 23444455555 899999999987665544433332 23789999999999997765433
Q ss_pred HHHHH----------------------------HhcC--ceEEEeccccccchhhhHHHHHHhh
Q 021210 168 WATYF----------------------------AKQG--TKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 168 ~~~~~----------------------------~~~g--~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
..+++ ++.+ .+++++|++++.|+++|.+.+.+..
T Consensus 183 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 183 ILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred HHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 32222 2223 5789999999999999998887654
No 200
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.39 E-value=1.8e-06 Score=72.41 Aligned_cols=99 Identities=14% Similarity=-0.019 Sum_probs=67.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCEEEEEEccCCCCh--HhHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISM--ADRNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~IlVlNK~DLv~~--~~~~~~~~ 170 (316)
+-++||+ ..+.......++.+|.+++|+|..++.+.. ...+..+. .+.|+++|+||+|+.+. .......+
T Consensus 52 i~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~ 130 (164)
T cd04139 52 ILDTAGQ-EDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAAN 130 (164)
T ss_pred EEECCCh-hhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHH
Confidence 3456777 455566667889999999999987653221 12222222 26899999999999762 12233333
Q ss_pred HHHhcCceEEEeccccccchhhhHHHHHH
Q 021210 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
.....+.+++.+|+++|.|++++.+.+.+
T Consensus 131 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 131 LARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred HHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 44455678999999999999998876543
No 201
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.39 E-value=1.5e-06 Score=72.48 Aligned_cols=98 Identities=10% Similarity=-0.018 Sum_probs=65.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh--CCCCEEEEEEccCCCChHh-HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL--GNRKRILVLNREDMISMAD-RNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l--~~k~~IlVlNK~DLv~~~~-~~~~~~~ 171 (316)
+-++||+ .++.......++.+|.+++|+|..+..+..+ ..+.++. .+.|+++|.||+|+..... ..+..+.
T Consensus 53 i~Dt~G~-~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~ 131 (162)
T cd04138 53 ILDTAGQ-EEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDL 131 (162)
T ss_pred EEECCCC-cchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHH
Confidence 3466777 4455555567889999999999876432211 1122221 2579999999999975332 2223333
Q ss_pred HHhcCceEEEeccccccchhhhHHHHH
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
....+..++.+||++|.|++++.+.+.
T Consensus 132 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 132 AKSYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred HHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence 445567889999999999999876654
No 202
>PLN03118 Rab family protein; Provisional
Probab=98.39 E-value=5.7e-07 Score=80.04 Aligned_cols=58 Identities=28% Similarity=0.389 Sum_probs=41.8
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCC---cEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~---~~~liDTPGi~~ 274 (316)
.++|+++|.+|||||||+|+|++......++..|++.....+.++. .+.|+||||...
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 74 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER 74 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchh
Confidence 5789999999999999999999876544444444444444444432 468999999753
No 203
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.39 E-value=2.2e-06 Score=72.81 Aligned_cols=97 Identities=13% Similarity=0.055 Sum_probs=65.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH---h-----CCCCEEEEEEccCCCChHh--HHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW---L-----GNRKRILVLNREDMISMAD--RNAWA 169 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~---l-----~~k~~IlVlNK~DLv~~~~--~~~~~ 169 (316)
+-++||+ .++.......++.+|.+++|+|..++.+.. .+..+ + ...|+++|.||+||.+... .++..
T Consensus 54 l~Dt~g~-~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~ 130 (165)
T cd01865 54 IWDTAGQ-ERYRTITTAYYRGAMGFILMYDITNEESFN--AVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGR 130 (165)
T ss_pred EEECCCh-HHHHHHHHHHccCCcEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHH
Confidence 4467887 455555567789999999999987643221 12222 1 2568999999999975432 12223
Q ss_pred HHHHhcCceEEEeccccccchhhhHHHHHH
Q 021210 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
+.....+..++.+||++|.|+++|.+.+..
T Consensus 131 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (165)
T cd01865 131 QLADQLGFEFFEASAKENINVKQVFERLVD 160 (165)
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 334456678999999999999998776544
No 204
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.38 E-value=6.7e-07 Score=75.26 Aligned_cols=56 Identities=25% Similarity=0.372 Sum_probs=39.3
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccc-cCCCCCceeeEEEEEeC---CcEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFG---KDLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~-vs~~pgtT~~~~~~~~~---~~~~liDTPGi~ 273 (316)
+||+++|.+|+|||||+|+|++..... ..+..|.+.....+..+ ..+.++||||-.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~ 61 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE 61 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchH
Confidence 579999999999999999999876433 34444543333333333 246799999953
No 205
>PRK10218 GTP-binding protein; Provisional
Probab=98.38 E-value=1.7e-06 Score=88.99 Aligned_cols=118 Identities=16% Similarity=0.056 Sum_probs=83.1
Q ss_pred CCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--C
Q 021210 71 NGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--G 146 (316)
Q Consensus 71 ~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~ 146 (316)
...|-...|++.+++++.....+.....+ +-++||| .++...+...++.+|.+|+|+|+..+.......+...+ .
T Consensus 41 ~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~-~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~ 119 (607)
T PRK10218 41 RVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGH-ADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY 119 (607)
T ss_pred eeeccccccccCceEEEEEEEEEecCCEEEEEEECCCc-chhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc
Confidence 44566666888888888777665544333 6789999 67888888999999999999999887654443333332 3
Q ss_pred CCCEEEEEEccCCCCh---HhHHHHHHHHHhc-------CceEEEeccccccc
Q 021210 147 NRKRILVLNREDMISM---ADRNAWATYFAKQ-------GTKVIFSNGQLGMG 189 (316)
Q Consensus 147 ~k~~IlVlNK~DLv~~---~~~~~~~~~~~~~-------g~~vi~iSa~~g~g 189 (316)
+.|.++++||+|+... ...++..+.|... ..+++++||++|.+
T Consensus 120 gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~ 172 (607)
T PRK10218 120 GLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIA 172 (607)
T ss_pred CCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcc
Confidence 6789999999998632 2234444444332 25589999999983
No 206
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.38 E-value=5.4e-07 Score=92.51 Aligned_cols=52 Identities=44% Similarity=0.661 Sum_probs=42.7
Q ss_pred ccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEE--e-CCcEEEEeCCCcccCC
Q 021210 224 GYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIPMR 276 (316)
Q Consensus 224 G~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~--~-~~~~~liDTPGi~~~~ 276 (316)
|.||||||||+|+|.+.+ ..+++.||+|.+..... . +..+.++||||.....
T Consensus 1 G~pNvGKSSL~N~Ltg~~-~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~ 55 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN-QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLT 55 (591)
T ss_pred CCCCCCHHHHHHHHhCCC-CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccC
Confidence 899999999999999876 58999999999865332 2 4568999999997543
No 207
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.38 E-value=1.5e-06 Score=75.11 Aligned_cols=99 Identities=11% Similarity=0.018 Sum_probs=62.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~--~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~ 172 (316)
+-++||+ .++.......++.+|++|+|+|+.++.+. ....+..++ .+.|+++|.||+||.+.....+..+.+
T Consensus 61 l~D~~G~-~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~ 139 (175)
T smart00177 61 VWDVGGQ-DKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKL 139 (175)
T ss_pred EEECCCC-hhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHh
Confidence 4556777 45555555668999999999998765322 122233332 246899999999996432222222221
Q ss_pred H-----hcCceEEEeccccccchhhhHHHHHH
Q 021210 173 A-----KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 173 ~-----~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
. .....++++||++|.|++++.+.|.+
T Consensus 140 ~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 171 (175)
T smart00177 140 GLHSIRDRNWYIQPTCATSGDGLYEGLTWLSN 171 (175)
T ss_pred CccccCCCcEEEEEeeCCCCCCHHHHHHHHHH
Confidence 1 11124667999999999998877654
No 208
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.38 E-value=1.8e-06 Score=72.46 Aligned_cols=99 Identities=14% Similarity=0.086 Sum_probs=67.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhC----CCCEEEEEEccCCCChHh--HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG----NRKRILVLNREDMISMAD--RNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l~----~k~~IlVlNK~DLv~~~~--~~~~~~~ 171 (316)
+-++||+ .++.......+..+|++++|+|+.++.+..+ ..+..+.. +.|+++|+||+|+....+ .++....
T Consensus 53 ~~D~~G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~ 131 (161)
T cd01861 53 LWDTAGQ-ERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKK 131 (161)
T ss_pred EEECCCc-HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHH
Confidence 4567887 5566667778999999999999976543221 11222211 378999999999954321 2222333
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHH
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
....+..++.+|++++.|++++.+.+.+
T Consensus 132 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 132 AKELNAMFIETSAKAGHNVKELFRKIAS 159 (161)
T ss_pred HHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 3345677899999999999998887654
No 209
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.38 E-value=2e-06 Score=70.97 Aligned_cols=98 Identities=15% Similarity=0.022 Sum_probs=66.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh-----CCCCEEEEEEccCCC-ChH-hHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMI-SMA-DRNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-~~i~~~l-----~~k~~IlVlNK~DLv-~~~-~~~~~~~~ 171 (316)
+-++||+ ..+.......++++|++++|+|+.++.+... ..+...+ ...|+++++||+|+. +.. ..++..+.
T Consensus 53 l~D~~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~ 131 (159)
T cd00154 53 IWDTAGQ-ERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQF 131 (159)
T ss_pred EEecCCh-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHH
Confidence 4567888 4566666778899999999999986432111 1111111 247999999999996 222 22333344
Q ss_pred HHhcCceEEEeccccccchhhhHHHHH
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
..+.+.+++.+|++.+.|++++.+.+.
T Consensus 132 ~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 132 AKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred HHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 445567899999999999999877653
No 210
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.37 E-value=1.6e-06 Score=73.89 Aligned_cols=100 Identities=10% Similarity=0.017 Sum_probs=64.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH----hCCCCEEEEEEccCCCChHhH---HHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW----LGNRKRILVLNREDMISMADR---NAWAT 170 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~----l~~k~~IlVlNK~DLv~~~~~---~~~~~ 170 (316)
+-++||+ .++...+...+..+|++++|+|+.++.+... ..+... ..+.|+++|.||+|+.+.... ++...
T Consensus 51 i~Dt~G~-~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~ 129 (166)
T cd01893 51 IVDTSSR-PQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEML 129 (166)
T ss_pred EEeCCCc-hhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHH
Confidence 4456777 3455556667899999999999987654433 112221 236799999999999764331 12111
Q ss_pred HH-HhcC--ceEEEeccccccchhhhHHHHHHh
Q 021210 171 YF-AKQG--TKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 171 ~~-~~~g--~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
.+ .+.. ..++.+||++|.|++++.+.+...
T Consensus 130 ~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~ 162 (166)
T cd01893 130 PIMNEFREIETCVECSAKTLINVSEVFYYAQKA 162 (166)
T ss_pred HHHHHHhcccEEEEeccccccCHHHHHHHHHHH
Confidence 11 1111 368899999999999988766543
No 211
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.37 E-value=7.4e-07 Score=74.95 Aligned_cols=56 Identities=29% Similarity=0.370 Sum_probs=39.9
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccc-cCCCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~-vs~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (316)
+||+++|.+|+|||||+|+|.+..... ..+.++.+.....+..+. .+.++||||..
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCch
Confidence 379999999999999999999765422 444455554444344432 47899999964
No 212
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.37 E-value=2.6e-06 Score=72.54 Aligned_cols=97 Identities=14% Similarity=0.085 Sum_probs=66.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------CCCCEEEEEEccCCCChHh--HHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMAD--RNAWA 169 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--------~~k~~IlVlNK~DLv~~~~--~~~~~ 169 (316)
+-++||+ .++.......++++|++++|+|+.++.+.. .+..++ .+.|+++|.||+|+.+..+ .++..
T Consensus 56 l~D~~g~-~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~ 132 (167)
T cd01867 56 IWDTAGQ-ERFRTITTAYYRGAMGIILVYDITDEKSFE--NIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGE 132 (167)
T ss_pred EEeCCch-HHHHHHHHHHhCCCCEEEEEEECcCHHHHH--hHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHH
Confidence 4467887 456666667789999999999997654321 222221 2468999999999975321 22233
Q ss_pred HHHHhcCceEEEeccccccchhhhHHHHHH
Q 021210 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
+.....+..++.+||++|.|++++.+.+.+
T Consensus 133 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 162 (167)
T cd01867 133 ALADEYGIKFLETSAKANINVEEAFFTLAK 162 (167)
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 344455677899999999999998766543
No 213
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.37 E-value=3.9e-07 Score=74.66 Aligned_cols=56 Identities=32% Similarity=0.413 Sum_probs=45.0
Q ss_pred EeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe----CCcEEEEeCCCcccCCC
Q 021210 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIPMRI 277 (316)
Q Consensus 222 ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~----~~~~~liDTPGi~~~~~ 277 (316)
++|.+|+|||||+|+|.+......+..+++|........ ...+.++||||+.....
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~ 60 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGG 60 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCcccc
Confidence 589999999999999998877768888888887654333 44789999999975443
No 214
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.36 E-value=2.1e-06 Score=77.69 Aligned_cols=90 Identities=19% Similarity=0.168 Sum_probs=69.5
Q ss_pred CCCCcchhhhhhccccCCcceE--EEecc--------cc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC
Q 021210 70 SNGSIEAYEEECDWADLDADLY--YWTKS--------LR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT 137 (316)
Q Consensus 70 ~~~~~g~~~e~e~~~~~d~~~~--~~~~~--------~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~ 137 (316)
..++|-...|++.+++++.... .|... .. .+-++||| .++..++...+..+|.+++|+|+..+....
T Consensus 35 ~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTPG~-~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~ 113 (222)
T cd01885 35 ARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSPGH-VDFSSEVTAALRLCDGALVVVDAVEGVCVQ 113 (222)
T ss_pred eeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCCCc-cccHHHHHHHHHhcCeeEEEEECCCCCCHH
Confidence 3477888899999999998744 56532 11 26789999 678889999999999999999999887655
Q ss_pred cHHHHHHh--CCCCEEEEEEccCCC
Q 021210 138 HPLMDQWL--GNRKRILVLNREDMI 160 (316)
Q Consensus 138 ~~~i~~~l--~~k~~IlVlNK~DLv 160 (316)
...+.+.. .+.|+++|+||+|+.
T Consensus 114 t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 114 TETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCcc
Confidence 44444433 267999999999986
No 215
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.36 E-value=8.6e-07 Score=75.66 Aligned_cols=56 Identities=25% Similarity=0.357 Sum_probs=38.8
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccC-CCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs-~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (316)
.+|+++|.+|||||||+|++.+....... ...|.+.....+..+. .+.++||||-.
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 64 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 64 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 68999999999999999999976543332 2234444333344432 57899999953
No 216
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.36 E-value=2.1e-06 Score=74.85 Aligned_cols=98 Identities=11% Similarity=0.034 Sum_probs=63.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~ 172 (316)
+-++||+ .++.......++.+|++|+|+|+.+..+.. ...+..++ .+.|+++|.||+|+....+.++..+.+
T Consensus 65 i~D~~Gq-~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l 143 (181)
T PLN00223 65 VWDVGGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL 143 (181)
T ss_pred EEECCCC-HHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHh
Confidence 4456887 555555556789999999999998654221 12333333 357899999999986544333333322
Q ss_pred HhcC-----ceEEEeccccccchhhhHHHHH
Q 021210 173 AKQG-----TKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 173 ~~~g-----~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
.-.. ..++.+||++|+|++++.+.|.
T Consensus 144 ~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 174 (181)
T PLN00223 144 GLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
T ss_pred CccccCCCceEEEeccCCCCCCHHHHHHHHH
Confidence 1111 1245689999999988877654
No 217
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.35 E-value=1.6e-06 Score=75.55 Aligned_cols=98 Identities=14% Similarity=0.075 Sum_probs=64.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~--~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~ 172 (316)
+-++||+ .++.......++.+|.+++|+|+.++... ....+.+++ .+.|+++|+||+|+......++..+.+
T Consensus 65 ~~D~~G~-~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l 143 (184)
T smart00178 65 TFDLGGH-QQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYAL 143 (184)
T ss_pred EEECCCC-HHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHc
Confidence 4567887 44555556778999999999999875322 122333333 367999999999985322222233222
Q ss_pred H--h----------cCceEEEeccccccchhhhHHHHH
Q 021210 173 A--K----------QGTKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 173 ~--~----------~g~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
. . .-..++++||++|.|++++.+.|.
T Consensus 144 ~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~ 181 (184)
T smart00178 144 GLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLS 181 (184)
T ss_pred CCCcccccccccCCceeEEEEeecccCCChHHHHHHHH
Confidence 1 0 013588999999999999887764
No 218
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.35 E-value=3.4e-06 Score=69.09 Aligned_cols=100 Identities=22% Similarity=0.177 Sum_probs=79.0
Q ss_pred cccccchH---HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHhcC
Q 021210 100 VQWYPGHI---AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQG 176 (316)
Q Consensus 100 i~~~Pgh~---~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g 176 (316)
..+.||.- .+....+.....++|++++|..+.++.+...+.+.... .+|+|-|++|+||....+++...+++.+.|
T Consensus 41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~~-~k~vIgvVTK~DLaed~dI~~~~~~L~eaG 119 (148)
T COG4917 41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPPGFLDIG-VKKVIGVVTKADLAEDADISLVKRWLREAG 119 (148)
T ss_pred ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCCccccccc-ccceEEEEecccccchHhHHHHHHHHHHcC
Confidence 45677762 34445577778999999999999999888887765544 456999999999998777776677777778
Q ss_pred -ceEEEeccccccchhhhHHHHHHh
Q 021210 177 -TKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 177 -~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
.+++.+|+.++.|+++|.++|..+
T Consensus 120 a~~IF~~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 120 AEPIFETSAVDNQGVEELVDYLASL 144 (148)
T ss_pred CcceEEEeccCcccHHHHHHHHHhh
Confidence 457789999999999999987654
No 219
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.35 E-value=2.4e-06 Score=72.35 Aligned_cols=98 Identities=14% Similarity=0.043 Sum_probs=65.0
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh-----CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMISMAD--RNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-~~i~~~l-----~~k~~IlVlNK~DLv~~~~--~~~~~~~ 171 (316)
+-++||+ .++.......+..+|++++|+|+.++.+... ..+...+ .+.|+++|.||+|+....+ .+...+.
T Consensus 56 i~D~~G~-~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 134 (165)
T cd01864 56 IWDTAGQ-ERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTL 134 (165)
T ss_pred EEECCCh-HHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 4578998 5566666677889999999999987643221 1121111 1468999999999975432 1222223
Q ss_pred HHhcC-ceEEEeccccccchhhhHHHHH
Q 021210 172 FAKQG-TKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 172 ~~~~g-~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
.+..+ ..++.+||++|.|++++.+.+.
T Consensus 135 ~~~~~~~~~~e~Sa~~~~~v~~~~~~l~ 162 (165)
T cd01864 135 AEKNGMLAVLETSAKESQNVEEAFLLMA 162 (165)
T ss_pred HHHcCCcEEEEEECCCCCCHHHHHHHHH
Confidence 33334 3678999999999998876654
No 220
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.35 E-value=1.3e-06 Score=85.52 Aligned_cols=125 Identities=17% Similarity=0.097 Sum_probs=86.0
Q ss_pred CcchhhhhhccccCCcceE-EEecccc------ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHH
Q 021210 73 SIEAYEEECDWADLDADLY-YWTKSLR------PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQW 144 (316)
Q Consensus 73 ~~g~~~e~e~~~~~d~~~~-~~~~~~~------~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~i~~~ 144 (316)
.|-.--|+|.++|+....+ ...+... ...++||| ..+.-+.-..++-+.-+|+||||..+...... ..+..
T Consensus 46 LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH-VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlA 124 (603)
T COG0481 46 LDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH-VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLA 124 (603)
T ss_pred hhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc-cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHH
Confidence 4444559999999998877 3333221 27789999 77887888889999999999999987643211 11122
Q ss_pred h-CCCCEEEEEEccCCCChHhHHHHHHHHHh-cC---ceEEEeccccccchhhhHHHHHH
Q 021210 145 L-GNRKRILVLNREDMISMADRNAWATYFAK-QG---TKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 145 l-~~k~~IlVlNK~DLv~~~~~~~~~~~~~~-~g---~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
+ .+-.++-|+||+||-..+ .+...+.+.. .| .+.+.+||++|.|++++.+.+..
T Consensus 125 le~~LeIiPViNKIDLP~Ad-pervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~ 183 (603)
T COG0481 125 LENNLEIIPVLNKIDLPAAD-PERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVE 183 (603)
T ss_pred HHcCcEEEEeeecccCCCCC-HHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHh
Confidence 2 267889999999985332 2223333332 34 35789999999999998776554
No 221
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.34 E-value=9.5e-07 Score=74.67 Aligned_cols=55 Identities=16% Similarity=0.350 Sum_probs=38.2
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (316)
++|+++|.+|||||||+|+|.+.+. .....|.++.+. ..+..+. .+.++||||..
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 63 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEF-NLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQE 63 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCChH
Confidence 5799999999999999999997653 233334444332 2233332 46799999975
No 222
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.34 E-value=2.3e-06 Score=72.17 Aligned_cols=99 Identities=9% Similarity=-0.072 Sum_probs=65.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhC--CCCEEEEEEccCCCChHh--HHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMISMAD--RNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~--~k~~IlVlNK~DLv~~~~--~~~~~~ 170 (316)
+-++||+ .++.......+..+|.+++|+|+.++.+... ..+.+... +.|+++|.||+|+.+... .+...+
T Consensus 52 i~Dt~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~ 130 (164)
T smart00173 52 ILDTAGQ-EEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKE 130 (164)
T ss_pred EEECCCc-ccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHH
Confidence 4467887 4455555567889999999999987543211 11122111 579999999999975321 122222
Q ss_pred HHHhcCceEEEeccccccchhhhHHHHHH
Q 021210 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
.....+..++.+||++|.|++++.+.+.+
T Consensus 131 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 131 LARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred HHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 33344577899999999999998876543
No 223
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.34 E-value=8e-07 Score=82.98 Aligned_cols=59 Identities=24% Similarity=0.345 Sum_probs=40.3
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCC--------CCCce-eeEEEEEe---C--CcEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP--------RPGVT-RVLKWVRF---G--KDLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~--------~pgtT-~~~~~~~~---~--~~~~liDTPGi~~ 274 (316)
..++|+++|.+|+|||||+|+|++......+. .+.|+ .......+ + -.+.++||||+-.
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd 75 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGD 75 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccc
Confidence 35789999999999999999999877554432 23332 22222222 2 2488999999964
No 224
>PRK11058 GTPase HflX; Provisional
Probab=98.34 E-value=4.5e-06 Score=82.56 Aligned_cols=119 Identities=15% Similarity=0.121 Sum_probs=73.1
Q ss_pred hhccccCCcceEEEecc-c--cccccccch-------HHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH----HHHHHh
Q 021210 80 ECDWADLDADLYYWTKS-L--RPVQWYPGH-------IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP----LMDQWL 145 (316)
Q Consensus 80 ~e~~~~~d~~~~~~~~~-~--~~i~~~Pgh-------~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~----~i~~~l 145 (316)
+..+.|+|...+.+.-. . --+.++||. ..+..+.+.+.+..||++|+|+|+.++....+. .+...+
T Consensus 226 ~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el 305 (426)
T PRK11058 226 DQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEI 305 (426)
T ss_pred cCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHh
Confidence 44556666654322211 1 125556665 223345566778999999999999887544332 112222
Q ss_pred C--CCCEEEEEEccCCCChHhHHHHHHHHHhcCce-EEEeccccccchhhhHHHHHHhh
Q 021210 146 G--NRKRILVLNREDMISMADRNAWATYFAKQGTK-VIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 146 ~--~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~-vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
. ++|+++|+||+|+.+.... . .+. ...+.. ++++||++|.|+++|.+.+....
T Consensus 306 ~~~~~pvIiV~NKiDL~~~~~~-~-~~~-~~~~~~~~v~ISAktG~GIdeL~e~I~~~l 361 (426)
T PRK11058 306 DAHEIPTLLVMNKIDMLDDFEP-R-IDR-DEENKPIRVWLSAQTGAGIPLLFQALTERL 361 (426)
T ss_pred ccCCCCEEEEEEcccCCCchhH-H-HHH-HhcCCCceEEEeCCCCCCHHHHHHHHHHHh
Confidence 2 5899999999999754221 1 111 122333 57899999999999988876543
No 225
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.34 E-value=1.4e-06 Score=74.52 Aligned_cols=99 Identities=13% Similarity=-0.038 Sum_probs=64.0
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHh
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLGNRKRILVLNREDMISMADRNAWATYFAK 174 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~ 174 (316)
+-++||+ .++.......+..+|++|+|+|..++.+..+. .+.+...+.|+++|.||+|+.......+..++...
T Consensus 53 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~ 131 (166)
T cd00877 53 VWDTAGQ-EKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRK 131 (166)
T ss_pred EEECCCC-hhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHH
Confidence 4556776 33333334567889999999999876443221 12222236899999999999733211111223333
Q ss_pred cCceEEEeccccccchhhhHHHHHH
Q 021210 175 QGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 175 ~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
.+.+++.+||++|.|++++.+.+.+
T Consensus 132 ~~~~~~e~Sa~~~~~v~~~f~~l~~ 156 (166)
T cd00877 132 KNLQYYEISAKSNYNFEKPFLWLAR 156 (166)
T ss_pred cCCEEEEEeCCCCCChHHHHHHHHH
Confidence 4567999999999999998877653
No 226
>PTZ00099 rab6; Provisional
Probab=98.34 E-value=2e-06 Score=74.86 Aligned_cols=101 Identities=14% Similarity=0.023 Sum_probs=67.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh----CCCCEEEEEEccCCCChH--hHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMA--DRNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l----~~k~~IlVlNK~DLv~~~--~~~~~~~~ 171 (316)
+-++||+ .++.......+..||++|+|+|..++.+..+ ..+..++ ...|+++|.||+||.... ..++....
T Consensus 33 iwDt~G~-e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~e~~~~ 111 (176)
T PTZ00099 33 LWDTAGQ-ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQK 111 (176)
T ss_pred EEECCCh-HHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCCHHHHHHH
Confidence 4456887 5666666678999999999999877543222 2222222 245789999999996421 12222333
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
....+..++.+||++|.|++++.+.+....
T Consensus 112 ~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l 141 (176)
T PTZ00099 112 AQEYNTMFHETSAKAGHNIKVLFKKIAAKL 141 (176)
T ss_pred HHHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 344456678899999999999887766544
No 227
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.33 E-value=2.7e-06 Score=73.15 Aligned_cols=102 Identities=16% Similarity=0.020 Sum_probs=66.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhC-----CCCEEEEEEccCCCChHhH---HH-H
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNREDMISMADR---NA-W 168 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l~-----~k~~IlVlNK~DLv~~~~~---~~-~ 168 (316)
+-++||. .++.......+..+|++++|+|+.+..+... ..+..++. ..|+++|.||+|+.+..+. ++ .
T Consensus 53 i~Dt~G~-~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~ 131 (170)
T cd04108 53 LWDTAGQ-ERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDA 131 (170)
T ss_pred EEeCCCh-HHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHH
Confidence 4456777 5565555677899999999999976432221 11222221 2358999999999754321 11 1
Q ss_pred HHHHHhcCceEEEeccccccchhhhHHHHHHhhh
Q 021210 169 ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (316)
Q Consensus 169 ~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~~ 202 (316)
.+...+.+.+++.+||++|.|++++.+.+..+..
T Consensus 132 ~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 132 IKLAAEMQAEYWSVSALSGENVREFFFRVAALTF 165 (170)
T ss_pred HHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 1223344567889999999999999888766654
No 228
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.33 E-value=2.1e-06 Score=74.50 Aligned_cols=99 Identities=16% Similarity=0.130 Sum_probs=63.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~--~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~ 172 (316)
+-+.||+ .++.+.....+..+|.+++|+|+.+..+. ....+...+ .+.|+++++||+|+......++..+++
T Consensus 67 l~D~~G~-~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~ 145 (190)
T cd00879 67 TFDLGGH-EQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQAL 145 (190)
T ss_pred EEECCCC-HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHh
Confidence 4567887 44545455678999999999999864221 112233333 257999999999996432222233322
Q ss_pred Hh----------------cCceEEEeccccccchhhhHHHHHH
Q 021210 173 AK----------------QGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 173 ~~----------------~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
.. ....++.+||++|.|++++.+.+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~ 188 (190)
T cd00879 146 GLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQ 188 (190)
T ss_pred CcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHh
Confidence 11 1135789999999999998877654
No 229
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.33 E-value=2.5e-06 Score=75.23 Aligned_cols=100 Identities=13% Similarity=0.060 Sum_probs=67.0
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh-----CCCCEEEEEEccCCCCh--HhHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-----GNRKRILVLNREDMISM--ADRNA 167 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l-----~~k~~IlVlNK~DLv~~--~~~~~ 167 (316)
+-++||+ .++.......+.++|.+|+|+|..++.+..+. .+...+ ...|+++|.||+|+.+. ...++
T Consensus 54 l~Dt~G~-~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~ 132 (201)
T cd04107 54 LWDIAGQ-ERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQ 132 (201)
T ss_pred EEECCCc-hhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHH
Confidence 4457887 45555556778999999999998876443221 222221 24689999999999632 12223
Q ss_pred HHHHHHhcC-ceEEEeccccccchhhhHHHHHHh
Q 021210 168 WATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 168 ~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
..++....+ ..++.+||++|.|++++.+.+.+.
T Consensus 133 ~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~ 166 (201)
T cd04107 133 MDQFCKENGFIGWFETSAKEGINIEEAMRFLVKN 166 (201)
T ss_pred HHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHH
Confidence 334444555 578999999999999987766543
No 230
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.33 E-value=7.9e-07 Score=76.25 Aligned_cols=55 Identities=25% Similarity=0.436 Sum_probs=38.5
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (316)
.++|+++|.+|||||||+|+|.+.......+..|.... .+.. +..+.++||||..
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~--~~~~~~~~l~l~D~~G~~ 69 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIK--TLEYEGYKLNIWDVGGQK 69 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEECCEEEEEEECCCCH
Confidence 46899999999999999999998754334443343222 2222 3357899999975
No 231
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.32 E-value=3.3e-06 Score=73.13 Aligned_cols=101 Identities=13% Similarity=-0.036 Sum_probs=65.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH--HHHH----hCCCCEEEEEEccCCCChH------hHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW----LGNRKRILVLNREDMISMA------DRNA 167 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~--i~~~----l~~k~~IlVlNK~DLv~~~------~~~~ 167 (316)
+-++||+ .++.......++.+|++|+|+|..+..+..+.. +... ..+.|+++|.||+||.+.. ...+
T Consensus 53 i~Dt~G~-~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~ 131 (187)
T cd04132 53 LWDTAGQ-EEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQ 131 (187)
T ss_pred EEECCCc-hhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHH
Confidence 4456786 445544445678999999999998754432221 1111 1367999999999996532 1122
Q ss_pred HHHHHHhcCc-eEEEeccccccchhhhHHHHHHhh
Q 021210 168 WATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 168 ~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
..+.....+. .++.+||++|.|++++...+....
T Consensus 132 ~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 166 (187)
T cd04132 132 AESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEA 166 (187)
T ss_pred HHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 2223344555 789999999999999877665543
No 232
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.32 E-value=2.1e-06 Score=84.73 Aligned_cols=101 Identities=20% Similarity=0.211 Sum_probs=65.4
Q ss_pred cccccchHH------HHHHHHHHHHhhcCeEEEEEeCCCCCC--CC--cHHHHHH-------hCCCCEEEEEEccCCCCh
Q 021210 100 VQWYPGHIA------KTEKELKDQLKLMDVVIEVRDARIPLS--TT--HPLMDQW-------LGNRKRILVLNREDMISM 162 (316)
Q Consensus 100 i~~~Pgh~~------~~~r~l~~~i~~aDlIl~VvDar~~~~--~~--~~~i~~~-------l~~k~~IlVlNK~DLv~~ 162 (316)
+.+.||... .........++++|++|+|+|+..... .. ...+... +.++|.++|+||+||...
T Consensus 210 laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~ 289 (424)
T PRK12297 210 MADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA 289 (424)
T ss_pred EEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC
Confidence 778898632 123445566889999999999864311 10 1112222 236899999999998533
Q ss_pred HhHHHHHHHHHhcCceEEEeccccccchhhhHHHHHHhhh
Q 021210 163 ADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (316)
Q Consensus 163 ~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~~ 202 (316)
.+ .+.++....+..++++||+++.|+++|.+.+.++..
T Consensus 290 ~e--~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~ 327 (424)
T PRK12297 290 EE--NLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLE 327 (424)
T ss_pred HH--HHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 22 222223333467899999999999999888766543
No 233
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.32 E-value=2.7e-06 Score=75.04 Aligned_cols=98 Identities=13% Similarity=0.094 Sum_probs=67.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH-------hCCCCEEEEEEccCCCChHh--HHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW-------LGNRKRILVLNREDMISMAD--RNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~-------l~~k~~IlVlNK~DLv~~~~--~~~~~~ 170 (316)
+-++||+ .++.......+..+|.+++|+|+.++.+.. .+..+ ....|+++|.||+|+.+... .++..+
T Consensus 59 l~D~~G~-~~~~~~~~~~~~~a~~iilv~D~~~~~s~~--~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~ 135 (199)
T cd04110 59 IWDTAGQ-ERFRTITSTYYRGTHGVIVVYDVTNGESFV--NVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYK 135 (199)
T ss_pred EEeCCCc-hhHHHHHHHHhCCCcEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHH
Confidence 4578888 555555567789999999999998754322 12222 22568999999999975432 122333
Q ss_pred HHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
+....+..++.+|+++|.|++++.+.+...
T Consensus 136 ~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~ 165 (199)
T cd04110 136 FAGQMGISLFETSAKENINVEEMFNCITEL 165 (199)
T ss_pred HHHHcCCEEEEEECCCCcCHHHHHHHHHHH
Confidence 344556788999999999999988776553
No 234
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.31 E-value=3.6e-06 Score=73.58 Aligned_cols=99 Identities=10% Similarity=-0.002 Sum_probs=64.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHH----HHHh----CCCCEEEEEEccCCCChHh--HHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLM----DQWL----GNRKRILVLNREDMISMAD--RNAW 168 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-~~i----~~~l----~~k~~IlVlNK~DLv~~~~--~~~~ 168 (316)
+-++||+ .++.......+..+|++|+|+|..+..+..+ ..+ .... .+.|+++|.||+|+....+ ..+.
T Consensus 51 i~Dt~G~-~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~ 129 (190)
T cd04144 51 VLDTAGQ-EEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEG 129 (190)
T ss_pred EEECCCc-hhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHH
Confidence 3467887 4555555567899999999999876543221 111 1111 2468999999999964322 1112
Q ss_pred HHHHHhcCceEEEeccccccchhhhHHHHHH
Q 021210 169 ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 169 ~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
.+.....+..++.+||++|.|++++.+.+.+
T Consensus 130 ~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~ 160 (190)
T cd04144 130 AALARRLGCEFIEASAKTNVNVERAFYTLVR 160 (190)
T ss_pred HHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence 2223344677899999999999998776554
No 235
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.31 E-value=3.2e-06 Score=75.51 Aligned_cols=100 Identities=18% Similarity=0.096 Sum_probs=65.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhC----CCCEEEEEEccCCCChHh--HHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG----NRKRILVLNREDMISMAD--RNAW 168 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~----~k~~IlVlNK~DLv~~~~--~~~~ 168 (316)
+-++||+ ..+.......+..+|++|+|+|..++.+..+. .+.+... +.|+++|.||+||..... .++.
T Consensus 54 i~Dt~G~-~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~ 132 (215)
T cd04109 54 VWDIGGQ-SIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKH 132 (215)
T ss_pred EEECCCc-HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHH
Confidence 4467787 55555566778999999999999876433221 1222221 236889999999974321 1122
Q ss_pred HHHHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 169 ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 169 ~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
.++....+..++.+||++|+|++++.+.+...
T Consensus 133 ~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~ 164 (215)
T cd04109 133 ARFAQANGMESCLVSAKTGDRVNLLFQQLAAE 164 (215)
T ss_pred HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 22333456678899999999999988776554
No 236
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.31 E-value=4.9e-06 Score=85.33 Aligned_cols=102 Identities=18% Similarity=0.102 Sum_probs=69.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHh-------------
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD------------- 164 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~------------- 164 (316)
+-++||| ..+.......++.+|++++|+|+.++......+...++. +.|+++++||+|+.+...
T Consensus 73 ~iDTpG~-e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak 151 (590)
T TIGR00491 73 FIDTPGH-EAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSK 151 (590)
T ss_pred EEECCCc-HhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHh
Confidence 5578999 566666667789999999999999876544444433333 679999999999974210
Q ss_pred ----H-HHHH-------HHHHhc-------------C--ceEEEeccccccchhhhHHHHHHhhh
Q 021210 165 ----R-NAWA-------TYFAKQ-------------G--TKVIFSNGQLGMGTMKLSRLAKALAS 202 (316)
Q Consensus 165 ----~-~~~~-------~~~~~~-------------g--~~vi~iSa~~g~gi~~L~~~L~~l~~ 202 (316)
. ..+. ..+.+. + ..++++||++|+|+++|...+..+..
T Consensus 152 ~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 152 QEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 0 0000 011111 1 46899999999999999987765443
No 237
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.31 E-value=3.8e-06 Score=71.32 Aligned_cols=95 Identities=13% Similarity=0.109 Sum_probs=64.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------CCCCEEEEEEccCCCChHh--HHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMAD--RNAWA 169 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--------~~k~~IlVlNK~DLv~~~~--~~~~~ 169 (316)
+-++||+ .++.......++.+|.+|+|+|..++.+.. .+..++ .+.|+++|.||+|+....+ .++..
T Consensus 55 i~Dt~G~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~ 131 (166)
T cd04122 55 IWDTAGQ-ERFRAVTRSYYRGAAGALMVYDITRRSTYN--HLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAK 131 (166)
T ss_pred EEECCCc-HHHHHHHHHHhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHH
Confidence 3467887 556666667889999999999998754322 122222 2468999999999965432 12222
Q ss_pred HHHHhcCceEEEeccccccchhhhHHHH
Q 021210 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (316)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~L 197 (316)
+...+.+..++.+||++|.|++++...+
T Consensus 132 ~~~~~~~~~~~e~Sa~~~~~i~e~f~~l 159 (166)
T cd04122 132 QFADENGLLFLECSAKTGENVEDAFLET 159 (166)
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 3334456788999999999998875443
No 238
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.30 E-value=3.8e-06 Score=70.68 Aligned_cols=98 Identities=13% Similarity=0.037 Sum_probs=67.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH--h--CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW--L--GNRKRILVLNREDMISMAD--RNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~--l--~~k~~IlVlNK~DLv~~~~--~~~~~~~ 171 (316)
+-++||| .++.......++.+|.+++|+|+.++.+..+ ..+... + .+.|+++|.||+|+....+ .++....
T Consensus 53 l~D~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~ 131 (161)
T cd04113 53 IWDTAGQ-ERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRF 131 (161)
T ss_pred EEECcch-HHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHH
Confidence 5567888 5666666777899999999999987543322 111211 1 2578999999999975322 2233334
Q ss_pred HHhcCceEEEeccccccchhhhHHHHH
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
....+..++.+|++++.|++++.+.+.
T Consensus 132 ~~~~~~~~~~~Sa~~~~~i~~~~~~~~ 158 (161)
T cd04113 132 AQENGLLFLETSALTGENVEEAFLKCA 158 (161)
T ss_pred HHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 455667899999999999998876543
No 239
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.30 E-value=3.9e-06 Score=70.90 Aligned_cols=96 Identities=15% Similarity=0.112 Sum_probs=65.0
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-------C-CCCEEEEEEccCCCChHh--HHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------G-NRKRILVLNREDMISMAD--RNAWA 169 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l-------~-~k~~IlVlNK~DLv~~~~--~~~~~ 169 (316)
+-+.||+ .++.......+..+|.+|+|+|+.++.+.. .+..++ . +.|+++|.||+|+....+ .++..
T Consensus 56 l~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~ 132 (165)
T cd01868 56 IWDTAGQ-ERYRAITSAYYRGAVGALLVYDITKKQTFE--NVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAK 132 (165)
T ss_pred EEeCCCh-HHHHHHHHHHHCCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHH
Confidence 4467876 455555567789999999999998654322 122221 1 478999999999975322 22233
Q ss_pred HHHHhcCceEEEeccccccchhhhHHHHH
Q 021210 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
++....+..++.+||++|.|++++.+.+.
T Consensus 133 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 133 AFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred HHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 33444567789999999999998877654
No 240
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.29 E-value=1.1e-06 Score=74.94 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=40.1
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~ 273 (316)
..+|+++|.+|+|||||+|+|.+.......+..|.+.....+ .+..+.++||||..
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~-~~~~~~~~D~~G~~ 69 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQS-DGFKLNVWDIGGQR 69 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEE-CCEEEEEEECCCCH
Confidence 578999999999999999999987544444444544332211 24568899999974
No 241
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.29 E-value=5.7e-07 Score=77.21 Aligned_cols=56 Identities=29% Similarity=0.401 Sum_probs=38.9
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccC---------------CCCCceeeEEEEEe---CCcEEEEeCCCccc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAA---------------PRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs---------------~~pgtT~~~~~~~~---~~~~~liDTPGi~~ 274 (316)
+|+++|.+|+|||||+|+|.+....... ...|+|.+...... ...+.++||||...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHED 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHH
Confidence 3899999999999999999876543321 22456655432222 34688999999753
No 242
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.29 E-value=4.4e-06 Score=69.70 Aligned_cols=99 Identities=18% Similarity=0.064 Sum_probs=65.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhC-CCCEEEEEEccCCCChHh--HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-NRKRILVLNREDMISMAD--RNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~-~k~~IlVlNK~DLv~~~~--~~~~~~~ 171 (316)
+-+.||+ ..+.......+..+|.+++|+|..++.+.... .+..... +.|+++|+||+|+....+ .++..+.
T Consensus 53 ~~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~ 131 (162)
T cd04123 53 IWDTAGQ-ERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEY 131 (162)
T ss_pred EEECCch-HHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHH
Confidence 3456776 44444444567899999999998765432111 1222222 578999999999975332 2233344
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHH
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
....+..++++|+++|.|++++.+.+..
T Consensus 132 ~~~~~~~~~~~s~~~~~gi~~~~~~l~~ 159 (162)
T cd04123 132 AKSVGAKHFETSAKTGKGIEELFLSLAK 159 (162)
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 4555677899999999999998877643
No 243
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.29 E-value=8.8e-07 Score=74.40 Aligned_cols=53 Identities=21% Similarity=0.357 Sum_probs=37.2
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeC--CcEEEEeCCCcc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG--KDLEFLDSPGII 273 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~--~~~~liDTPGi~ 273 (316)
+|+++|.+|||||||+|++.+.......+..|.+. ..+..+ ..+.++||||..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~l~i~D~~G~~ 55 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNV--EMLQLEKHLSLTVWDVGGQE 55 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcce--EEEEeCCceEEEEEECCCCH
Confidence 47999999999999999999876544433333332 222232 358899999975
No 244
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.29 E-value=6.7e-07 Score=88.26 Aligned_cols=58 Identities=28% Similarity=0.371 Sum_probs=43.8
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCccccc------------------------------CCCCCceeeEEEEEe---CC
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA------------------------------APRPGVTRVLKWVRF---GK 262 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~v------------------------------s~~pgtT~~~~~~~~---~~ 262 (316)
..++|+++|.+|+|||||+|+|+....... ...+|+|++.....+ +.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 357899999999999999999985432211 115899999765554 44
Q ss_pred cEEEEeCCCcc
Q 021210 263 DLEFLDSPGII 273 (316)
Q Consensus 263 ~~~liDTPGi~ 273 (316)
.+.|+||||..
T Consensus 85 ~i~liDtpG~~ 95 (425)
T PRK12317 85 YFTIVDCPGHR 95 (425)
T ss_pred EEEEEECCCcc
Confidence 68999999964
No 245
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.28 E-value=3.6e-06 Score=70.63 Aligned_cols=98 Identities=11% Similarity=-0.085 Sum_probs=62.6
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh--CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISMAD--RNAWATY 171 (316)
Q Consensus 101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~~ 171 (316)
-++||. .++.......+..+|.+++|+|..++.+..+. .+.+.. .+.|+++|.||+|+.+... .++..+.
T Consensus 54 ~Dt~G~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 132 (163)
T cd04136 54 LDTAGT-EQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQAL 132 (163)
T ss_pred EECCCc-cccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHH
Confidence 356776 44444445667899999999998765432211 111111 2579999999999975322 1111222
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHH
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
.+..+.+++.+||++|.|++++.+.+.+
T Consensus 133 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 133 ARQWGCPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred HHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 2334567899999999999988776543
No 246
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.28 E-value=4.1e-06 Score=73.76 Aligned_cols=98 Identities=13% Similarity=0.012 Sum_probs=67.2
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhCCCCEEEEEEccCCCChHh--HHHHHHHHH
Q 021210 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLGNRKRILVLNREDMISMAD--RNAWATYFA 173 (316)
Q Consensus 101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~~k~~IlVlNK~DLv~~~~--~~~~~~~~~ 173 (316)
-+++|+ .++..........+|.+|+|+|..++.+..+. ++.....+.|+++|.||+||....+ .++..++.+
T Consensus 60 wDt~G~-~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~ 138 (189)
T cd04121 60 WDTSGQ-GRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAE 138 (189)
T ss_pred EeCCCc-HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHH
Confidence 345777 55666556778999999999999876543321 2222223679999999999964221 222333344
Q ss_pred hcCceEEEeccccccchhhhHHHHHH
Q 021210 174 KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 174 ~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
+.+..++.+||++|.|++++.+.+..
T Consensus 139 ~~~~~~~e~SAk~g~~V~~~F~~l~~ 164 (189)
T cd04121 139 RNGMTFFEVSPLCNFNITESFTELAR 164 (189)
T ss_pred HcCCEEEEecCCCCCCHHHHHHHHHH
Confidence 56778999999999999998776554
No 247
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.28 E-value=3.3e-06 Score=75.13 Aligned_cols=99 Identities=12% Similarity=-0.058 Sum_probs=66.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHh
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLGNRKRILVLNREDMISMADRNAWATYFAK 174 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~ 174 (316)
+-+++|+ .++..........+|++|+|+|..+..+..+. ++.+...+.|+++|.||+||.......+..++...
T Consensus 48 iwDt~G~-e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~ 126 (200)
T smart00176 48 VWDTAGQ-EKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRK 126 (200)
T ss_pred EEECCCc-hhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHH
Confidence 4456787 55555555678999999999999876443221 12222236799999999998643211122233344
Q ss_pred cCceEEEeccccccchhhhHHHHHH
Q 021210 175 QGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 175 ~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
.+..++.+||+.|.|++++...+..
T Consensus 127 ~~~~~~e~SAk~~~~v~~~F~~l~~ 151 (200)
T smart00176 127 KNLQYYDISAKSNYNFEKPFLWLAR 151 (200)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 5678899999999999988776543
No 248
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.28 E-value=3.5e-06 Score=71.57 Aligned_cols=100 Identities=12% Similarity=-0.026 Sum_probs=64.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HH----HHHHh----CCCCEEEEEEccCCCChHhH--HHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PL----MDQWL----GNRKRILVLNREDMISMADR--NAW 168 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-~~----i~~~l----~~k~~IlVlNK~DLv~~~~~--~~~ 168 (316)
+-++||+ .++.......+..+|.+|+|+|..++.+..+ .. +.+.. .+.|+++|.||+|+....+. ++.
T Consensus 53 i~Dt~G~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~ 131 (165)
T cd04140 53 ITDTTGS-HQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEG 131 (165)
T ss_pred EEECCCC-CcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHH
Confidence 4456776 3344434456789999999999987654322 11 21221 24699999999999753221 111
Q ss_pred HHHHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 169 ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 169 ~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
..+....+..++.+||++|.|++++.+.+.++
T Consensus 132 ~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 132 AACATEWNCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred HHHHHHhCCcEEEeecCCCCCHHHHHHHHHhc
Confidence 22233345678999999999999988876554
No 249
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.28 E-value=1.1e-06 Score=73.76 Aligned_cols=55 Identities=25% Similarity=0.342 Sum_probs=36.8
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeC---CcEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFG---KDLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~---~~~~liDTPGi~ 273 (316)
++|+++|.+|||||||+|+|.+..... ...|.++.+ ...+..+ -.+.++||||..
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVS-KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCeEEEEEEEECCccH
Confidence 479999999999999999999776322 333333322 2223322 247899999963
No 250
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=4.6e-06 Score=82.99 Aligned_cols=155 Identities=16% Similarity=0.096 Sum_probs=92.7
Q ss_pred ccccccCCCCCeeEEecC-CCCCcCCCCCC-CCCCCcchhhhhhcccc--CCcceEEEeccccc--cccccchHHHHHHH
Q 021210 40 SLSSSLSSSAPIIQTVGG-KQSSWHGGNSN-NSNGSIEAYEEECDWAD--LDADLYYWTKSLRP--VQWYPGHIAKTEKE 113 (316)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~g~~~e~e~~~~--~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~ 113 (316)
+.|..+-.+||-+.|.|- .++--- -+| +++-+. -+.|-=++| +.+=.+-+. .-++ +-++|||+ ++..
T Consensus 144 a~p~~l~~RpPVVTiMGHVDHGKTT--LLD~lRks~V--AA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHa--AF~a 216 (683)
T KOG1145|consen 144 ADPKLLEPRPPVVTIMGHVDHGKTT--LLDALRKSSV--AAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHA--AFSA 216 (683)
T ss_pred cCHhhcCCCCCeEEEeecccCChhh--HHHHHhhCce--ehhhcCCccceeceEEEecC-CCCEEEEecCCcHH--HHHH
Confidence 345667789999999886 432100 011 111100 112222333 222122222 2222 45789995 3444
Q ss_pred HH-HHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHHHHHhcC---------ceEEE
Q 021210 114 LK-DQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQG---------TKVIF 181 (316)
Q Consensus 114 l~-~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g---------~~vi~ 181 (316)
|+ ..+.-+|+|++||.+.++....-.+.....+ +.|+++++||||.-... .+.....+...| ..+++
T Consensus 217 MRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~-pekv~~eL~~~gi~~E~~GGdVQvip 295 (683)
T KOG1145|consen 217 MRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGAN-PEKVKRELLSQGIVVEDLGGDVQVIP 295 (683)
T ss_pred HHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCC-HHHHHHHHHHcCccHHHcCCceeEEE
Confidence 55 6688899999999999988665444333333 78999999999965332 233333343333 46899
Q ss_pred eccccccchhhhHHHHHHhhh
Q 021210 182 SNGQLGMGTMKLSRLAKALAS 202 (316)
Q Consensus 182 iSa~~g~gi~~L~~~L~~l~~ 202 (316)
+||++|+|++.|.+.+.-++.
T Consensus 296 iSAl~g~nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 296 ISALTGENLDLLEEAILLLAE 316 (683)
T ss_pred eecccCCChHHHHHHHHHHHH
Confidence 999999999999887765544
No 251
>PRK00007 elongation factor G; Reviewed
Probab=98.27 E-value=5.7e-06 Score=86.60 Aligned_cols=116 Identities=13% Similarity=0.010 Sum_probs=82.7
Q ss_pred CCCCcchhhhhhccccCCcceEEEecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC-
Q 021210 70 SNGSIEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG- 146 (316)
Q Consensus 70 ~~~~~g~~~e~e~~~~~d~~~~~~~~~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~- 146 (316)
..++|-...|++.+++++.....|...-. .+-++||| .++..++...+..+|++++|+|+..+.......+..++.
T Consensus 47 ~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~-~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~ 125 (693)
T PRK00007 47 AATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGH-VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADK 125 (693)
T ss_pred cccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCc-HHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHH
Confidence 45777778899999999987775544333 37789999 457778889999999999999999887766666655543
Q ss_pred -CCCEEEEEEccCCCChHhHHHHHHHHHh-cC----ceEEEeccccc
Q 021210 147 -NRKRILVLNREDMISMADRNAWATYFAK-QG----TKVIFSNGQLG 187 (316)
Q Consensus 147 -~k~~IlVlNK~DLv~~~~~~~~~~~~~~-~g----~~vi~iSa~~g 187 (316)
++|.++++||+|+.+.. .....+.+++ .+ ...+++|+..+
T Consensus 126 ~~~p~iv~vNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 126 YKVPRIAFVNKMDRTGAD-FYRVVEQIKDRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred cCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCeeeEEecCccCCc
Confidence 68999999999998543 2222233322 22 23456776554
No 252
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.27 E-value=5.4e-06 Score=70.67 Aligned_cols=97 Identities=11% Similarity=0.073 Sum_probs=66.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------CCCCEEEEEEccCCCChHh--HHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMAD--RNAWA 169 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--------~~k~~IlVlNK~DLv~~~~--~~~~~ 169 (316)
+-++||+ .++.......++.+|++++|+|+.++.+.. .+..++ .+.|+++|.||+|+.+... .++..
T Consensus 57 i~Dt~G~-~~~~~~~~~~~~~~d~il~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~ 133 (168)
T cd01866 57 IWDTAGQ-ESFRSITRSYYRGAAGALLVYDITRRETFN--HLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGE 133 (168)
T ss_pred EEECCCc-HHHHHHHHHHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHH
Confidence 4556887 556665667789999999999998644322 222222 2568999999999974322 22233
Q ss_pred HHHHhcCceEEEeccccccchhhhHHHHHH
Q 021210 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
.+..+.+..++++|++.+.|++++...+.+
T Consensus 134 ~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~ 163 (168)
T cd01866 134 AFAKEHGLIFMETSAKTASNVEEAFINTAK 163 (168)
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 344556778899999999999987765543
No 253
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.27 E-value=5.2e-06 Score=69.75 Aligned_cols=98 Identities=15% Similarity=0.017 Sum_probs=65.1
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHH-HHHh----CCCCEEEEEEccCCCChH--hHHHHHHHH
Q 021210 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLM-DQWL----GNRKRILVLNREDMISMA--DRNAWATYF 172 (316)
Q Consensus 101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-~~i-~~~l----~~k~~IlVlNK~DLv~~~--~~~~~~~~~ 172 (316)
-++||+ .++.......++.+|.+++|+|+.++.+... ..+ ..+. ...|++++.||+|+.+.. ..++..+..
T Consensus 55 ~D~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~ 133 (163)
T cd01860 55 WDTAGQ-ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYA 133 (163)
T ss_pred EeCCch-HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHH
Confidence 357887 4455555567889999999999986542211 111 1111 245799999999987432 223333444
Q ss_pred HhcCceEEEeccccccchhhhHHHHHH
Q 021210 173 AKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 173 ~~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
...+..++.+|+++|.|+.++.+.+.+
T Consensus 134 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 134 DENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred HHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 555678999999999999998776543
No 254
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.27 E-value=4.2e-06 Score=73.69 Aligned_cols=100 Identities=9% Similarity=-0.068 Sum_probs=63.5
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh--CCCCEEEEEEccCCCCh-Hh--HHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISM-AD--RNAWA 169 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l--~~k~~IlVlNK~DLv~~-~~--~~~~~ 169 (316)
+-+.||+ .++.......+..+|++|+|+|+.++.+..+. .+.... .+.|+++|+||+|+.+. .. .....
T Consensus 51 i~D~~G~-~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~ 129 (198)
T cd04147 51 ILDTSGS-YSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDAL 129 (198)
T ss_pred EEECCCc-hhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHH
Confidence 4456887 33443334567899999999998765332211 122222 25799999999999753 21 11112
Q ss_pred HHHH-hcCceEEEeccccccchhhhHHHHHHh
Q 021210 170 TYFA-KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 170 ~~~~-~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
+.+. ..+..++.+||++|.|++++.+.+...
T Consensus 130 ~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 161 (198)
T cd04147 130 STVELDWNCGFVETSAKDNENVLEVFKELLRQ 161 (198)
T ss_pred HHHHhhcCCcEEEecCCCCCCHHHHHHHHHHH
Confidence 2222 234567899999999999998876553
No 255
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.27 E-value=5.8e-06 Score=68.83 Aligned_cols=98 Identities=12% Similarity=-0.004 Sum_probs=66.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhC--CCCEEEEEEccCCCChHh--HHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMISMAD--RNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~--~k~~IlVlNK~DLv~~~~--~~~~~~ 170 (316)
+-++||+ .++.......++.+|++++|+|..++.+..+ ..+..... ..|+++|+||+|+.+... .+...+
T Consensus 51 l~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~ 129 (160)
T cd00876 51 ILDTAGQ-EEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKA 129 (160)
T ss_pred EEECCCh-HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHH
Confidence 5678998 4455556677899999999999876532211 11222222 689999999999976321 122233
Q ss_pred HHHhcCceEEEeccccccchhhhHHHHH
Q 021210 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
...+.+..++.+|++.+.|++++.+.|.
T Consensus 130 ~~~~~~~~~~~~S~~~~~~i~~l~~~l~ 157 (160)
T cd00876 130 LAKEWGCPFIETSAKDNINIDEVFKLLV 157 (160)
T ss_pred HHHHcCCcEEEeccCCCCCHHHHHHHHH
Confidence 3444557789999999999999877654
No 256
>PRK12739 elongation factor G; Reviewed
Probab=98.27 E-value=6e-06 Score=86.41 Aligned_cols=92 Identities=16% Similarity=0.098 Sum_probs=73.2
Q ss_pred CCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC-
Q 021210 70 SNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG- 146 (316)
Q Consensus 70 ~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~- 146 (316)
..++|-...|++.+++++.....|...-.. +-++|||. ++..++...+..+|++|+|+|+..+.......+..++.
T Consensus 45 ~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~-~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~ 123 (691)
T PRK12739 45 AATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV-DFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADK 123 (691)
T ss_pred ccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH-HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 456777788999999999988866554443 67899994 57778889999999999999999887665555555443
Q ss_pred -CCCEEEEEEccCCCCh
Q 021210 147 -NRKRILVLNREDMISM 162 (316)
Q Consensus 147 -~k~~IlVlNK~DLv~~ 162 (316)
++|.|+++||+|+...
T Consensus 124 ~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 124 YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred cCCCEEEEEECCCCCCC
Confidence 6899999999999854
No 257
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.26 E-value=1e-06 Score=85.71 Aligned_cols=59 Identities=20% Similarity=0.392 Sum_probs=47.7
Q ss_pred ceEEeEeccCCCCcchhHHhhhcC----ccc-----------ccCCCCC---ceeeEEE-------EEeC----CcEEEE
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKR----RMC-----------PAAPRPG---VTRVLKW-------VRFG----KDLEFL 267 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~----~~~-----------~vs~~pg---tT~~~~~-------~~~~----~~~~li 267 (316)
.+.|+++|..|+|||||||++.+. +.. .++..+| ||++..+ +... .++.|+
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 578999999999999999999987 555 5788899 8988654 2223 468999
Q ss_pred eCCCcccC
Q 021210 268 DSPGIIPM 275 (316)
Q Consensus 268 DTPGi~~~ 275 (316)
||+|+...
T Consensus 97 DcvG~~v~ 104 (492)
T TIGR02836 97 DCVGYTVK 104 (492)
T ss_pred ECCCcccC
Confidence 99999743
No 258
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.26 E-value=1.2e-06 Score=73.60 Aligned_cols=54 Identities=22% Similarity=0.233 Sum_probs=37.7
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (316)
+||+++|.+|||||||+|++.+... ++..+.++.+. ....++. .+.++||||..
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 61 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQE 61 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCc
Confidence 6899999999999999999987542 34444555432 1222322 36789999965
No 259
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.25 E-value=9.2e-07 Score=74.81 Aligned_cols=56 Identities=21% Similarity=0.205 Sum_probs=36.3
Q ss_pred EEeEeccCCCCcchhHHhhhcCccc---ccCCCCCceeeE--EEEEe-CCcEEEEeCCCccc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMC---PAAPRPGVTRVL--KWVRF-GKDLEFLDSPGIIP 274 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~---~vs~~pgtT~~~--~~~~~-~~~~~liDTPGi~~ 274 (316)
+|+++|.+|+|||||+|+|.+.... .......+|... ..+.. +..+.++||||...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 62 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQES 62 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChh
Confidence 4799999999999999999864321 111122334332 22333 34688999999753
No 260
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.25 E-value=3.1e-06 Score=73.74 Aligned_cols=99 Identities=10% Similarity=0.013 Sum_probs=63.0
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~--~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~ 172 (316)
+-++||+ .++.......+..+|++|+|+|+.+..+. ....+.+.+ .+.|+++|.||+|+.......+..+.+
T Consensus 65 l~D~~G~-~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l 143 (182)
T PTZ00133 65 MWDVGGQ-DKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKL 143 (182)
T ss_pred EEECCCC-HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHh
Confidence 4567887 45555556678999999999999764321 122333333 247899999999986432222222222
Q ss_pred Hh-----cCceEEEeccccccchhhhHHHHHH
Q 021210 173 AK-----QGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 173 ~~-----~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
.. ....++.+||++|.|++++.+.|.+
T Consensus 144 ~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~ 175 (182)
T PTZ00133 144 GLHSVRQRNWYIQGCCATTAQGLYEGLDWLSA 175 (182)
T ss_pred CCCcccCCcEEEEeeeCCCCCCHHHHHHHHHH
Confidence 11 1123456899999999998877654
No 261
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.25 E-value=5.2e-06 Score=69.74 Aligned_cols=98 Identities=14% Similarity=0.048 Sum_probs=64.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh--CCCCEEEEEEccCCCChH-hHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISMA-DRNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l--~~k~~IlVlNK~DLv~~~-~~~~~~~~ 171 (316)
+-++||+ .++.......++.+|.+++|+|+.++.+.... .+..+. .+.|+++|.||+|+.... ..++..+.
T Consensus 53 l~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~ 131 (161)
T cd01863 53 IWDTAGQ-ERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKF 131 (161)
T ss_pred EEECCCc-hhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHH
Confidence 3467886 45555556678899999999998765432211 111221 256899999999997332 22223333
Q ss_pred HHhcCceEEEeccccccchhhhHHHHH
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
....+..++++|+++|.|++++.+.+.
T Consensus 132 ~~~~~~~~~~~Sa~~~~gi~~~~~~~~ 158 (161)
T cd01863 132 ARKHNMLFIETSAKTRDGVQQAFEELV 158 (161)
T ss_pred HHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence 344567799999999999998876643
No 262
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.25 E-value=4.8e-06 Score=70.38 Aligned_cols=98 Identities=12% Similarity=-0.009 Sum_probs=64.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh-----CCCCEEEEEEccCCCChHh--HHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNREDMISMAD--RNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~l-----~~k~~IlVlNK~DLv~~~~--~~~~~~ 170 (316)
+-++||+ .++.......+..+|.+++|+|..+..+..+. .+..+. .+.|+++|.||+|+.+... .+...+
T Consensus 53 i~Dt~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 131 (164)
T cd04175 53 ILDTAGT-EQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN 131 (164)
T ss_pred EEECCCc-ccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHH
Confidence 4466887 45555555678999999999998754332211 111111 2579999999999975321 111122
Q ss_pred HHHhcCceEEEeccccccchhhhHHHHH
Q 021210 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
..++.+.+++.+||++|.|++++...+.
T Consensus 132 ~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 132 LARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred HHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 2344567899999999999999877654
No 263
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.25 E-value=1.3e-06 Score=73.39 Aligned_cols=54 Identities=20% Similarity=0.314 Sum_probs=38.5
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCccc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP 274 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~~ 274 (316)
||+++|.+|||||||+|++.+.......+..|.+... +.. +..+.++||||...
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~D~~G~~~ 55 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVET--VEYKNVSFTVWDVGGQDK 55 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEE--EEECCEEEEEEECCCChh
Confidence 4899999999999999999987643333334444332 222 34689999999754
No 264
>PRK04213 GTP-binding protein; Provisional
Probab=98.25 E-value=1e-05 Score=71.00 Aligned_cols=83 Identities=14% Similarity=0.077 Sum_probs=52.3
Q ss_pred HHhhcCeEEEEEeCCCCCCC-----------CcHHHHHHh--CCCCEEEEEEccCCCChH--hHHHHHHHHHhc------
Q 021210 117 QLKLMDVVIEVRDARIPLST-----------THPLMDQWL--GNRKRILVLNREDMISMA--DRNAWATYFAKQ------ 175 (316)
Q Consensus 117 ~i~~aDlIl~VvDar~~~~~-----------~~~~i~~~l--~~k~~IlVlNK~DLv~~~--~~~~~~~~~~~~------ 175 (316)
.+..+|++++|+|+...... .+..+...+ .+.|+++|+||+|+.+.. ...++.+.+.-.
T Consensus 87 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 166 (201)
T PRK04213 87 NADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQW 166 (201)
T ss_pred hhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcHHHHHHHHHHHhcCCcccccc
Confidence 34567899999998653211 112223332 378999999999997544 222333222110
Q ss_pred CceEEEeccccccchhhhHHHHHHh
Q 021210 176 GTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 176 g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
+..++++||++| |++++.+.|...
T Consensus 167 ~~~~~~~SA~~g-gi~~l~~~l~~~ 190 (201)
T PRK04213 167 QDIIAPISAKKG-GIEELKEAIRKR 190 (201)
T ss_pred CCcEEEEecccC-CHHHHHHHHHHh
Confidence 124789999999 999988876553
No 265
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.25 E-value=1.9e-06 Score=72.31 Aligned_cols=55 Identities=22% Similarity=0.333 Sum_probs=36.9
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeCC---cEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~~---~~~liDTPGi~ 273 (316)
+||+++|.+|+|||||+|++.+.+. .....+.++.+ ...+..+. .+.++||||..
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 60 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF-SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH
Confidence 4799999999999999999997753 22223333322 22333332 46799999953
No 266
>PTZ00369 Ras-like protein; Provisional
Probab=98.24 E-value=4.1e-06 Score=73.15 Aligned_cols=99 Identities=10% Similarity=-0.062 Sum_probs=64.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhC--CCCEEEEEEccCCCChHh--HHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMISMAD--RNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~--~k~~IlVlNK~DLv~~~~--~~~~~~ 170 (316)
+-++||+ .++.......+..+|++++|+|..++.+..+ ..+.+... +.|+++|.||+|+.+... ..+..+
T Consensus 57 i~Dt~G~-~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~ 135 (189)
T PTZ00369 57 ILDTAGQ-EEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQE 135 (189)
T ss_pred EEeCCCC-ccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH
Confidence 3467887 4555555567889999999999987643211 11222222 568999999999864321 112222
Q ss_pred HHHhcCceEEEeccccccchhhhHHHHHH
Q 021210 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
.....+.+++.+||++|.|++++.+.+.+
T Consensus 136 ~~~~~~~~~~e~Sak~~~gi~~~~~~l~~ 164 (189)
T PTZ00369 136 LAKSFGIPFLETSAKQRVNVDEAFYELVR 164 (189)
T ss_pred HHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence 33344567899999999999988766543
No 267
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.24 E-value=7.9e-07 Score=75.87 Aligned_cols=48 Identities=25% Similarity=0.346 Sum_probs=32.8
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEEEeCCCcccC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM 275 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~~~ 275 (316)
+|+++|.+|||||||+|+|.+.... ...|....+ ... .++||||....
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-----~~~~~~v~~---~~~-~~iDtpG~~~~ 50 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-----ARKTQAVEF---NDK-GDIDTPGEYFS 50 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-----CccceEEEE---CCC-CcccCCccccC
Confidence 5899999999999999999876421 123333322 111 27999998543
No 268
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.24 E-value=1.4e-06 Score=73.15 Aligned_cols=55 Identities=22% Similarity=0.205 Sum_probs=37.0
Q ss_pred EEeEeccCCCCcchhHHhhhcCcc--cccCCCCCceeeEEEEEeCCcEEEEeCCCccc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP 274 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~--~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~~ 274 (316)
+|+++|.+|||||||+|+|.+... ....+..|.+.... ...+..+.++||||...
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~-~~~~~~~~l~Dt~G~~~ 57 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESF-EKGNLSFTAFDMSGQGK 57 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEE-EECCEEEEEEECCCCHh
Confidence 479999999999999999997642 22334445443221 11233578999999753
No 269
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.24 E-value=6.7e-06 Score=69.60 Aligned_cols=99 Identities=16% Similarity=0.085 Sum_probs=65.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHH----HHHhC-CCCEEEEEEccCCCChHhH-HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLM----DQWLG-NRKRILVLNREDMISMADR-NAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-~~i----~~~l~-~k~~IlVlNK~DLv~~~~~-~~~~~~~ 172 (316)
+.++||+ ..+.......+..+|++++|+|..++.+... ..+ ..+.. +.|.++|.||+|+.+..+. ....+.+
T Consensus 60 ~~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~ 138 (169)
T cd04114 60 IWDTAGQ-ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEF 138 (169)
T ss_pred EEECCCc-HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHH
Confidence 4577888 5566666788999999999999986543211 111 11122 4678999999999754331 2222333
Q ss_pred Hh-cCceEEEeccccccchhhhHHHHHH
Q 021210 173 AK-QGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 173 ~~-~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
.+ ....++.+|+++|.|++++.+.+..
T Consensus 139 ~~~~~~~~~~~Sa~~~~gv~~l~~~i~~ 166 (169)
T cd04114 139 SDAQDMYYLETSAKESDNVEKLFLDLAC 166 (169)
T ss_pred HHHcCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 33 2356889999999999988776553
No 270
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.22 E-value=2.2e-06 Score=72.09 Aligned_cols=56 Identities=27% Similarity=0.396 Sum_probs=36.0
Q ss_pred eEEeEeccCCCCcchhHHhhhcCccccc-CCCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~v-s~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (316)
+||+++|.+|||||||+|+|++...... .+..+.......+.++. .+.++||||..
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~ 60 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchH
Confidence 3799999999999999999997653221 12222222222233322 46799999974
No 271
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.22 E-value=9.4e-06 Score=83.34 Aligned_cols=99 Identities=17% Similarity=0.116 Sum_probs=67.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCChHh-------------
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD------------- 164 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~~~------------- 164 (316)
+-++||| ..+.......+..+|++++|+|++++..........++ .+.|+++++||+|+.+...
T Consensus 75 ~iDTPG~-e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~ 153 (586)
T PRK04004 75 FIDTPGH-EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEK 153 (586)
T ss_pred EEECCCh-HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhh
Confidence 5678999 66776666788999999999999986544333333333 2688999999999863110
Q ss_pred -----HH-------HHHHHHHhcC---------------ceEEEeccccccchhhhHHHHHH
Q 021210 165 -----RN-------AWATYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 165 -----~~-------~~~~~~~~~g---------------~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
.. +...++.+.| ..++++||.+|.|+++|.+.+..
T Consensus 154 ~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 154 QSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 00 0111222222 45899999999999988876644
No 272
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.22 E-value=5.1e-06 Score=72.38 Aligned_cols=99 Identities=12% Similarity=-0.005 Sum_probs=63.5
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh----CCCCEEEEEEccCCCChHh------HHHHHH
Q 021210 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL----GNRKRILVLNREDMISMAD------RNAWAT 170 (316)
Q Consensus 102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-~~i~~~l----~~k~~IlVlNK~DLv~~~~------~~~~~~ 170 (316)
++||. .++.......+..+|++++|+|..++.+..+ ..+...+ .+.|+++|.||+|+.+..+ ..+..+
T Consensus 56 D~~G~-~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~ 134 (193)
T cd04118 56 DTAGS-ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQD 134 (193)
T ss_pred ECCCc-hhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHH
Confidence 45676 3343333455779999999999976533221 1112222 2579999999999864321 122223
Q ss_pred HHHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
+....+..++.+||++|.|+++|.+.+.+..
T Consensus 135 ~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 135 FADEIKAQHFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred HHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3344457788999999999999988776543
No 273
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.22 E-value=3.5e-06 Score=71.41 Aligned_cols=99 Identities=13% Similarity=0.070 Sum_probs=63.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh---CCCCEEEEEEccCCCChHh--HHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL---GNRKRILVLNREDMISMAD--RNAWA 169 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l---~~k~~IlVlNK~DLv~~~~--~~~~~ 169 (316)
+-++||+...........+..+|++|+|+|+.++.+..+ ..+.... .+.|+++|.||+|+..... .++..
T Consensus 51 i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~ 130 (165)
T cd04146 51 ILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGE 130 (165)
T ss_pred EEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHH
Confidence 456788743223345567889999999999987643221 1122221 2678999999999854321 12222
Q ss_pred HHHHhcCceEEEeccccc-cchhhhHHHHH
Q 021210 170 TYFAKQGTKVIFSNGQLG-MGTMKLSRLAK 198 (316)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g-~gi~~L~~~L~ 198 (316)
+..+..+..++.+|+++| .|++++.+.+.
T Consensus 131 ~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~ 160 (165)
T cd04146 131 KLASELGCLFFEVSAAEDYDGVHSVFHELC 160 (165)
T ss_pred HHHHHcCCEEEEeCCCCCchhHHHHHHHHH
Confidence 333345677899999999 48888876554
No 274
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.22 E-value=2.7e-06 Score=72.42 Aligned_cols=56 Identities=18% Similarity=0.275 Sum_probs=37.5
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCC--ceeeEEEEEeCC---cEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG--VTRVLKWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pg--tT~~~~~~~~~~---~~~liDTPGi~ 273 (316)
.+||+++|.+|||||||+|++.+... .....|. ++.....+..+. .+.++||||..
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~ 63 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSF-NPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcC-CcccccCccceEEEEEEEECCEEEEEEEEeCCchH
Confidence 36899999999999999999997652 2222332 322223333332 46799999964
No 275
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.21 E-value=2.2e-06 Score=74.68 Aligned_cols=55 Identities=27% Similarity=0.448 Sum_probs=37.0
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee---EEEEEeCC---cEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV---LKWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~---~~~~~~~~---~~~liDTPGi~ 273 (316)
+||+++|.+|||||||+|++.+... ..+....|+.. ...+.++. .+.++||||..
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~ 61 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRF-LVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCc-CCcCcccceeeEEEEEEEEECCEEEEEEEEECCCch
Confidence 3799999999999999999997653 33333333322 22334432 35699999974
No 276
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.21 E-value=3.2e-06 Score=72.22 Aligned_cols=95 Identities=13% Similarity=-0.036 Sum_probs=60.5
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh---CCCCEEEEEEccCCCChHhHHHHHHH-----
Q 021210 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL---GNRKRILVLNREDMISMADRNAWATY----- 171 (316)
Q Consensus 102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l---~~k~~IlVlNK~DLv~~~~~~~~~~~----- 171 (316)
++||+ .++.......+..+|.+|+|+|+.++.+.. ...+..++ .+.|+++|.||+|+.......+..+.
T Consensus 50 Dt~G~-~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~ 128 (164)
T cd04162 50 EIGGS-QNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEP 128 (164)
T ss_pred ECCCC-cchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChh
Confidence 56777 445554556799999999999998754221 11233333 36799999999998654332222211
Q ss_pred H-HhcCceEEEecccc------ccchhhhHHHH
Q 021210 172 F-AKQGTKVIFSNGQL------GMGTMKLSRLA 197 (316)
Q Consensus 172 ~-~~~g~~vi~iSa~~------g~gi~~L~~~L 197 (316)
+ .+.+..++.+||+. ++|++++.+.+
T Consensus 129 ~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~ 161 (164)
T cd04162 129 IARGRRWILQGTSLDDDGSPSRMEAVKDLLSQL 161 (164)
T ss_pred hcCCCceEEEEeeecCCCChhHHHHHHHHHHHH
Confidence 2 23346677788877 88887776654
No 277
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.21 E-value=8.4e-06 Score=72.76 Aligned_cols=90 Identities=17% Similarity=0.115 Sum_probs=63.5
Q ss_pred CCCCcchhhhhhccccCCcceEEE--ec---ccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHH
Q 021210 70 SNGSIEAYEEECDWADLDADLYYW--TK---SLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMD 142 (316)
Q Consensus 70 ~~~~~g~~~e~e~~~~~d~~~~~~--~~---~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~ 142 (316)
+.+.|-...|++.+.+++.....+ .. ... .+-++||| .++...+...+..+|.+++|+|+..+.......+.
T Consensus 38 ~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~-~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~ 116 (213)
T cd04167 38 LRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH-VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLI 116 (213)
T ss_pred eeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC-cchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHH
Confidence 345566667788888877666543 21 111 26688999 56777888889999999999999877654333333
Q ss_pred HHh--CCCCEEEEEEccCCC
Q 021210 143 QWL--GNRKRILVLNREDMI 160 (316)
Q Consensus 143 ~~l--~~k~~IlVlNK~DLv 160 (316)
+.. .++|.++|+||+|++
T Consensus 117 ~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 117 RHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred HHHHHcCCCEEEEEECcccC
Confidence 332 368999999999986
No 278
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.21 E-value=7.3e-06 Score=72.99 Aligned_cols=99 Identities=10% Similarity=0.051 Sum_probs=64.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh-CCCCEEEEEEccCCCChHhH--HHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-GNRKRILVLNREDMISMADR--NAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l-~~k~~IlVlNK~DLv~~~~~--~~~~~~ 171 (316)
+-+++|+ .++.......++.+|.+|+|+|..++.+..+. .+.... .+.|+++|.||+||.+..++ .+-.++
T Consensus 53 iwDtaGq-e~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~ 131 (202)
T cd04120 53 IWDTAGQ-ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKF 131 (202)
T ss_pred EEeCCCc-hhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 3455776 56666566788999999999999876543321 111111 25789999999999643321 111222
Q ss_pred HHhc-CceEEEeccccccchhhhHHHHHH
Q 021210 172 FAKQ-GTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 172 ~~~~-g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
..+. +..++.+||++|.|++++.+.+..
T Consensus 132 a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 132 AQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred HHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 2232 567889999999999988765543
No 279
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.21 E-value=7.2e-06 Score=85.82 Aligned_cols=92 Identities=15% Similarity=0.051 Sum_probs=71.5
Q ss_pred CCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC-
Q 021210 70 SNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG- 146 (316)
Q Consensus 70 ~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~- 146 (316)
..++|-...|++.++|++.....|...... +-++||| .++...+...++.+|++++|+|+..+.......+..++.
T Consensus 47 ~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~-~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~ 125 (689)
T TIGR00484 47 AATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGH-VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANR 125 (689)
T ss_pred ccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCC-cchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHH
Confidence 356677788999999999888766554443 6688999 456667888999999999999999877665555555443
Q ss_pred -CCCEEEEEEccCCCCh
Q 021210 147 -NRKRILVLNREDMISM 162 (316)
Q Consensus 147 -~k~~IlVlNK~DLv~~ 162 (316)
+.|+++++||+|+...
T Consensus 126 ~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 126 YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred cCCCEEEEEECCCCCCC
Confidence 6799999999999853
No 280
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.21 E-value=2.7e-06 Score=71.02 Aligned_cols=54 Identities=26% Similarity=0.275 Sum_probs=36.0
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (316)
+||+++|.+|||||||+|++.+... ......|+.+. ..+.++. .+.++||||-.
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 60 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 60 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--cCCcCCcchheEEEEEEECCEEEEEEEEECCCCc
Confidence 4799999999999999999997652 22233333332 1222332 25689999964
No 281
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.21 E-value=6.2e-06 Score=71.92 Aligned_cols=99 Identities=13% Similarity=0.024 Sum_probs=61.8
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh---CCCCEEEEEEccCCCC---hHh---HHH-H
Q 021210 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL---GNRKRILVLNREDMIS---MAD---RNA-W 168 (316)
Q Consensus 101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l---~~k~~IlVlNK~DLv~---~~~---~~~-~ 168 (316)
-+++|+ .++.......+..+|++++|+|..++.+..+ ..+.... .....++|.||+||.. ..+ ..+ .
T Consensus 54 wDt~G~-~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~ 132 (182)
T cd04128 54 WDLGGQ-REFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQA 132 (182)
T ss_pred EeCCCc-hhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHH
Confidence 345666 4455444566899999999999977644322 1122221 2233478999999962 111 111 2
Q ss_pred HHHHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 169 ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 169 ~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
.++....+..++.+||++|.|++++.+.+.+.
T Consensus 133 ~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~ 164 (182)
T cd04128 133 RKYAKAMKAPLIFCSTSHSINVQKIFKIVLAK 164 (182)
T ss_pred HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 22333456778999999999999988766543
No 282
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.21 E-value=7.9e-06 Score=88.19 Aligned_cols=102 Identities=18% Similarity=0.134 Sum_probs=69.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHh-------------
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD------------- 164 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~------------- 164 (316)
+-++||| ..+..........+|++++|+|+.+++..........+. +.|+++|+||+|+.+...
T Consensus 530 fiDTPGh-e~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~ 608 (1049)
T PRK14845 530 FIDTPGH-EAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNE 608 (1049)
T ss_pred EEECCCc-HHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhh
Confidence 5678999 556555556678899999999998876554443333332 679999999999974211
Q ss_pred -----HHHHH-------HHHHhcC---------------ceEEEeccccccchhhhHHHHHHhhh
Q 021210 165 -----RNAWA-------TYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAKALAS 202 (316)
Q Consensus 165 -----~~~~~-------~~~~~~g---------------~~vi~iSa~~g~gi~~L~~~L~~l~~ 202 (316)
..+.. ..+.+.| ..++++||++|+|+++|...+..+.+
T Consensus 609 q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 609 QDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred hHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 01110 0112221 46899999999999999988765544
No 283
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.20 E-value=2.1e-06 Score=74.83 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=38.1
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (316)
..+|+++|.+|||||||+|++.+.....+.+..+.|.. .+.. +..+.++||||..
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~G~~ 72 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSE--ELAIGNIKFTTFDLGGHQ 72 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceE--EEEECCEEEEEEECCCCH
Confidence 46799999999999999999998654333332233322 2222 3467899999975
No 284
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.20 E-value=2.9e-06 Score=71.84 Aligned_cols=56 Identities=21% Similarity=0.344 Sum_probs=36.3
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccC-CCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs-~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (316)
.||+++|.+|+|||||+|++......... ...|+......+..+. .+.++||||-.
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~ 63 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQE 63 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChH
Confidence 57999999999999999999865432211 1112222223344433 57899999953
No 285
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.20 E-value=1.7e-06 Score=76.69 Aligned_cols=56 Identities=25% Similarity=0.427 Sum_probs=40.9
Q ss_pred eEEeEeccCCCCcchhHHhhhcC------ccc---------ccCCCCCceeeEEEEEe---CCcEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKR------RMC---------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~------~~~---------~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~ 273 (316)
++|+++|.+|+|||||+++|+.. ... ......|+|.+.....+ +..+.++||||..
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~ 76 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA 76 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH
Confidence 67999999999999999999853 110 01124688888654444 4468999999974
No 286
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.19 E-value=2.3e-06 Score=73.69 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=38.4
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (316)
.+|+++|.+|||||||+|+|.........+..|.+. ..+.. +..+.++||||..
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~D~~G~~ 70 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNV--EEIVYKNIRFLMWDIGGQE 70 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCCCcCCccccce--EEEEECCeEEEEEECCCCH
Confidence 579999999999999999998765444443334332 22222 3468899999974
No 287
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.19 E-value=2.5e-06 Score=72.16 Aligned_cols=98 Identities=13% Similarity=-0.005 Sum_probs=61.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHH----HhCCCCEEEEEEccCCCChHhH--------
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQ----WLGNRKRILVLNREDMISMADR-------- 165 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~----~l~~k~~IlVlNK~DLv~~~~~-------- 165 (316)
+-++||+. ++.......+..+|++++|+|+.++.+.... .+.. ...+.|+++|.||+|+.+....
T Consensus 52 ~~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 130 (171)
T cd00157 52 LWDTAGQE-EYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGK 130 (171)
T ss_pred EEeCCCcc-cccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCC
Confidence 34567763 3323223446889999999999865432221 1111 1236899999999999755432
Q ss_pred -----HHHHHHHHhcCc-eEEEeccccccchhhhHHHHH
Q 021210 166 -----NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 166 -----~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~L~ 198 (316)
++..+.....+. .++.+|+++|.|++++.+.+.
T Consensus 131 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 169 (171)
T cd00157 131 EPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAI 169 (171)
T ss_pred CccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHh
Confidence 111223334444 789999999999999887654
No 288
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.19 E-value=2.4e-06 Score=72.39 Aligned_cols=55 Identities=18% Similarity=0.275 Sum_probs=37.5
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (316)
.||+++|.+|||||||+|++.+... .....|.++.+. ..+..+. .+.++||||..
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 62 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 62 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 5799999999999999999997653 223344444332 2233322 47899999964
No 289
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.19 E-value=1.6e-06 Score=76.13 Aligned_cols=56 Identities=23% Similarity=0.367 Sum_probs=37.7
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccC---------------CCCCceeeEEEEEe---CCcEEEEeCCCccc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAA---------------PRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs---------------~~pgtT~~~~~~~~---~~~~~liDTPGi~~ 274 (316)
+|+++|.+|||||||+|+|+........ ...|+|.......+ ...+.++||||...
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~ 77 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHAD 77 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHH
Confidence 6899999999999999999963211111 12466655432222 34688999999753
No 290
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.19 E-value=4.2e-06 Score=74.16 Aligned_cols=56 Identities=30% Similarity=0.504 Sum_probs=38.3
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCccc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~ 274 (316)
++|+++|.+|||||||+|++.+..... ...|.++.+. ..+..+. .+.|+||||...
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~-~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~ 61 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPE-EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQR 61 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCc-ccCCccccccceeEEEECCEEEEEEEEeCCCccc
Confidence 369999999999999999999765322 2345554342 2233333 367999999864
No 291
>CHL00071 tufA elongation factor Tu
Probab=98.19 E-value=2e-06 Score=84.68 Aligned_cols=58 Identities=22% Similarity=0.384 Sum_probs=42.4
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCccc---------------ccCCCCCceeeEEEEEe---CCcEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC---------------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~---------------~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~ 273 (316)
..++|+++|.+|+|||||+|+|++.... .....+|+|++.....+ +..+.|+||||..
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH
Confidence 4688999999999999999999964211 11123789988644333 3468899999953
No 292
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.19 E-value=1.8e-05 Score=65.89 Aligned_cols=82 Identities=17% Similarity=0.200 Sum_probs=58.2
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHHH----HH--hcCceEEEeccccccch
Q 021210 119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATY----FA--KQGTKVIFSNGQLGMGT 190 (316)
Q Consensus 119 ~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~~----~~--~~g~~vi~iSa~~g~gi 190 (316)
+..+++++|+|...+.......+.+++. +.|+++|+||+|+.+..+....... +. ....+++++|++++.|+
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~ 159 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGI 159 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCH
Confidence 4568899999998776555555555554 5789999999999866543332222 21 12256889999999999
Q ss_pred hhhHHHHHHh
Q 021210 191 MKLSRLAKAL 200 (316)
Q Consensus 191 ~~L~~~L~~l 200 (316)
+++.+.+.++
T Consensus 160 ~~l~~~l~~~ 169 (170)
T cd01876 160 DELRALIEKW 169 (170)
T ss_pred HHHHHHHHHh
Confidence 9998887654
No 293
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.19 E-value=9.9e-06 Score=69.77 Aligned_cols=98 Identities=10% Similarity=-0.070 Sum_probs=65.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH-----HHHHh--CCCCEEEEEEccCCCChHh--HHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNREDMISMAD--RNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~-----i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~ 170 (316)
+-++||. .++.......+..+|.+++|+|..++.+..+.. +.+.. .+.|+++|.||+|+....+ .++..+
T Consensus 54 i~Dt~G~-~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~ 132 (172)
T cd04141 54 ILDTAGQ-AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRN 132 (172)
T ss_pred EEeCCCc-hhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHH
Confidence 3456776 455554556788999999999998765543321 22221 2579999999999864321 112222
Q ss_pred HHHhcCceEEEeccccccchhhhHHHHH
Q 021210 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
..++.+..++.+||++|.|++++.+.+.
T Consensus 133 ~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 133 LAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred HHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 3344567889999999999998876654
No 294
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.18 E-value=2.5e-06 Score=82.48 Aligned_cols=60 Identities=23% Similarity=0.234 Sum_probs=38.9
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCc-----ccccCCCCCceeeEEEEEeC--CcEEEEeCCCcccCCC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRR-----MCPAAPRPGVTRVLKWVRFG--KDLEFLDSPGIIPMRI 277 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~-----~~~vs~~pgtT~~~~~~~~~--~~~~liDTPGi~~~~~ 277 (316)
+++|+|+|-+|+|||||||+|.|-. .+.++. ..||.....|.-. .++.++|.||+-.+.+
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv-~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f 101 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGV-VETTMEPTPYPHPKFPNVTLWDLPGIGTPNF 101 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSS-HSCCTS-EEEE-SS-TTEEEEEE--GGGSS-
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCC-CcCCCCCeeCCCCCCCCCeEEeCCCCCCCCC
Confidence 6889999999999999999998732 223332 2466666655543 4799999999975554
No 295
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.18 E-value=2.6e-06 Score=77.12 Aligned_cols=60 Identities=28% Similarity=0.426 Sum_probs=40.0
Q ss_pred ccceEEeEeccCCCCcchhHHhhhcCcccccC-------CCCCceee-E--EEEEe---CCcEEEEeCCCccc
Q 021210 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAA-------PRPGVTRV-L--KWVRF---GKDLEFLDSPGIIP 274 (316)
Q Consensus 215 ~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs-------~~pgtT~~-~--~~~~~---~~~~~liDTPGi~~ 274 (316)
++..+|++||.+|.|||||+|+|...+....+ ++|.||-= . +.+.- .-++.+||||||-+
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGD 116 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGD 116 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCccc
Confidence 35688999999999999999999976654432 23333321 1 11111 12578999999964
No 296
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.18 E-value=1.1e-05 Score=73.63 Aligned_cols=88 Identities=17% Similarity=0.082 Sum_probs=64.9
Q ss_pred CcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCC
Q 021210 73 SIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNR 148 (316)
Q Consensus 73 ~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k 148 (316)
.|-...|++.+.+++.....+.....+ +-++||| .++...+...+..+|.+++|+|+..+.......+.+.+ .+.
T Consensus 39 ~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~-~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~ 117 (237)
T cd04168 39 TDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGH-MDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNI 117 (237)
T ss_pred CCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCc-cchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCC
Confidence 344455777788887777655544443 6688999 66778888999999999999999987654334444443 278
Q ss_pred CEEEEEEccCCCC
Q 021210 149 KRILVLNREDMIS 161 (316)
Q Consensus 149 ~~IlVlNK~DLv~ 161 (316)
|+++++||+|+..
T Consensus 118 P~iivvNK~D~~~ 130 (237)
T cd04168 118 PTIIFVNKIDRAG 130 (237)
T ss_pred CEEEEEECccccC
Confidence 9999999999874
No 297
>PLN03118 Rab family protein; Provisional
Probab=98.17 E-value=8e-06 Score=72.63 Aligned_cols=100 Identities=13% Similarity=0.005 Sum_probs=67.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH--HHHHh------CCCCEEEEEEccCCCChHh--HHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL------GNRKRILVLNREDMISMAD--RNAWA 169 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~--i~~~l------~~k~~IlVlNK~DLv~~~~--~~~~~ 169 (316)
+-++||+ .++.......+..+|.+|+|+|+.++.+..+.. +...+ .+.++++|.||+|+..... .++..
T Consensus 66 l~Dt~G~-~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~ 144 (211)
T PLN03118 66 IWDTAGQ-ERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGM 144 (211)
T ss_pred EEECCCc-hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHH
Confidence 5578887 556555567789999999999998654322211 11111 2458899999999974322 12223
Q ss_pred HHHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
+.....+..++.+||++|.|++++.+.+...
T Consensus 145 ~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~ 175 (211)
T PLN03118 145 ALAKEHGCLFLECSAKTRENVEQCFEELALK 175 (211)
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 3334456778999999999999988776544
No 298
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.17 E-value=3.8e-06 Score=71.36 Aligned_cols=55 Identities=25% Similarity=0.244 Sum_probs=36.1
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCce--eeEEEEEeC---CcEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT--RVLKWVRFG---KDLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT--~~~~~~~~~---~~~~liDTPGi~ 273 (316)
+||+++|.+|||||||+|+|.+.+... ...|.++ .....+..+ -.+.++||||..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~ 61 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTS-AFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQE 61 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCChH
Confidence 579999999999999999999766322 2223222 222222222 247899999964
No 299
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.17 E-value=1.3e-06 Score=74.75 Aligned_cols=56 Identities=29% Similarity=0.369 Sum_probs=37.1
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccc--------------cCCCCCceeeEEEEEe--------CCcEEEEeCCCccc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCP--------------AAPRPGVTRVLKWVRF--------GKDLEFLDSPGIIP 274 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~--------------vs~~pgtT~~~~~~~~--------~~~~~liDTPGi~~ 274 (316)
+|+++|.+|||||||+|+|++..... .....|+|...+.... ...+.++||||...
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD 79 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh
Confidence 48999999999999999998743211 1112356655432221 22367999999864
No 300
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.17 E-value=7e-06 Score=74.15 Aligned_cols=99 Identities=10% Similarity=-0.045 Sum_probs=62.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----CCCCEEEEEEccCCCCh-----------
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISM----------- 162 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~l----~~k~~IlVlNK~DLv~~----------- 162 (316)
+-++||+ .++.......+..+|++|+|+|..+..+..+. .+..+. .+.|+|+|.||+||.+.
T Consensus 48 iwDt~G~-e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~ 126 (220)
T cd04126 48 IWDTAGR-EQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAG 126 (220)
T ss_pred EEeCCCc-ccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccccccccccccc
Confidence 3445676 44544445678899999999999876443322 122222 24689999999999751
Q ss_pred --------Hh--HHHHHHHHHhcC--------------ceEEEeccccccchhhhHHHHHH
Q 021210 163 --------AD--RNAWATYFAKQG--------------TKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 163 --------~~--~~~~~~~~~~~g--------------~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
.+ .++..++.++.+ ..++.+||++|.|++++...+.+
T Consensus 127 ~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~ 187 (220)
T cd04126 127 DRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFN 187 (220)
T ss_pred ccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHH
Confidence 10 122223333333 46889999999999998766554
No 301
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.17 E-value=2.3e-06 Score=72.36 Aligned_cols=54 Identities=24% Similarity=0.223 Sum_probs=37.1
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (316)
.||+++|.+|||||||+|++.... .....+.|+.+. ..+.++. .+.++||||..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE 60 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC--CCcccCCcchheEEEEEEECCEEEEEEEEECCCcc
Confidence 479999999999999999998543 233444555442 1233332 35689999974
No 302
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.17 E-value=6.7e-06 Score=69.28 Aligned_cols=97 Identities=12% Similarity=-0.094 Sum_probs=62.3
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-H----HHHHh--CCCCEEEEEEccCCCChHhH--HHHHHH
Q 021210 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWL--GNRKRILVLNREDMISMADR--NAWATY 171 (316)
Q Consensus 101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~----i~~~l--~~k~~IlVlNK~DLv~~~~~--~~~~~~ 171 (316)
-++||+ .++.......+..+|.+++|+|..++.+..+. . +.+.. .+.|+++|.||+|+.+.... .+....
T Consensus 54 ~Dt~G~-~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~ 132 (163)
T cd04176 54 LDTAGT-EQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRAL 132 (163)
T ss_pred EECCCc-ccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHH
Confidence 456775 44555455668899999999999775432211 1 11111 36799999999998653221 111222
Q ss_pred HHhcCceEEEeccccccchhhhHHHHH
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
....+..++++||++|.|++++...+.
T Consensus 133 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 133 AEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred HHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 233456789999999999998876653
No 303
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.16 E-value=3.4e-06 Score=71.11 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=36.3
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCccc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~ 274 (316)
||+++|.+|||||||+|++.+.... .....|+.+. .....+. .+.++||||...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~ 60 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFV--DDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEE 60 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCccc
Confidence 6999999999999999999976532 2233344332 1222322 467899999754
No 304
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.16 E-value=3.5e-06 Score=69.63 Aligned_cols=53 Identities=25% Similarity=0.299 Sum_probs=36.4
Q ss_pred EeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (316)
Q Consensus 220 i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (316)
|+++|.+|||||||+|+|.+... .....|.+..+...+.. +..+.++||||..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 55 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF-SEDTIPTVGFNMRKVTKGNVTLKVWDLGGQP 55 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC-CcCccCCCCcceEEEEECCEEEEEEECCCCH
Confidence 79999999999999999998653 23334443333322222 2357899999964
No 305
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.15 E-value=2.1e-05 Score=69.53 Aligned_cols=93 Identities=22% Similarity=0.198 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHh---hcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHHHHH-hcC----c
Q 021210 108 AKTEKELKDQLK---LMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFA-KQG----T 177 (316)
Q Consensus 108 ~~~~r~l~~~i~---~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~~~~-~~g----~ 177 (316)
++..+.+.+.+. +-..+++|+|+|+++...+.++.+++. +.|+++|+||+|.++..+..+...... .++ .
T Consensus 91 e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~ 170 (200)
T COG0218 91 EKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPD 170 (200)
T ss_pred HHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCc
Confidence 334444445553 356799999999999998989888876 789999999999999876544333333 221 2
Q ss_pred e--EEEeccccccchhhhHHHHHHh
Q 021210 178 K--VIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 178 ~--vi~iSa~~g~gi~~L~~~L~~l 200 (316)
. +++.|+..+.|+++|++.|.+.
T Consensus 171 ~~~~~~~ss~~k~Gi~~l~~~i~~~ 195 (200)
T COG0218 171 DQWVVLFSSLKKKGIDELKAKILEW 195 (200)
T ss_pred cceEEEEecccccCHHHHHHHHHHH
Confidence 2 7888999999999998877654
No 306
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.15 E-value=3.2e-06 Score=73.39 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=37.1
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (316)
..+|+++|.+|||||||+|+|.+.......+..+.+. ..+.. +..+.++||||-.
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~--~~i~~~~~~~~l~D~~G~~ 74 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTS--EELTIGNIKFKTFDLGGHE 74 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcce--EEEEECCEEEEEEECCCCH
Confidence 4579999999999999999999765433222222222 12222 3467899999954
No 307
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.15 E-value=1.8e-06 Score=71.34 Aligned_cols=44 Identities=23% Similarity=0.400 Sum_probs=31.5
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEEEeCCCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGI 272 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi 272 (316)
||+++|.+|||||||+|+|.+.... .+ .|....+ .. .++||||.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~-~t~~~~~---~~--~~iDt~G~ 45 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YK-KTQAVEY---ND--GAIDTPGE 45 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----cc-cceeEEE---cC--eeecCchh
Confidence 5899999999999999999977531 11 1222222 22 68999997
No 308
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.15 E-value=5.7e-06 Score=70.48 Aligned_cols=98 Identities=14% Similarity=0.030 Sum_probs=61.9
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH------HHHHHhCCCCEEEEEEccCCCChHh----------
Q 021210 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDMISMAD---------- 164 (316)
Q Consensus 101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~------~i~~~l~~k~~IlVlNK~DLv~~~~---------- 164 (316)
-++||. .++.......++.+|++|+|+|..++.+..+. .+.....+.|+++|.||+|+.+...
T Consensus 51 ~Dt~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 129 (174)
T smart00174 51 WDTAGQ-EDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQ 129 (174)
T ss_pred EECCCC-cccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccC
Confidence 356776 33433333457899999999999865433221 1111223689999999999965221
Q ss_pred ----HHHHHHHHHhcCc-eEEEeccccccchhhhHHHHHH
Q 021210 165 ----RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 165 ----~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
.++..+..++.+. .++.+||++|.|++++.+.+..
T Consensus 130 ~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~ 169 (174)
T smart00174 130 EPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIR 169 (174)
T ss_pred CCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 0111123334453 7889999999999998776543
No 309
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.15 E-value=3.3e-06 Score=70.88 Aligned_cols=55 Identities=27% Similarity=0.349 Sum_probs=35.9
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeC-----CcEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG-----KDLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~-----~~~~liDTPGi~ 273 (316)
++|+++|.+|+|||||+|++.+.... ....|..+.+. ..+.+. -.+.++||||..
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 62 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFT-KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQE 62 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchH
Confidence 36999999999999999999976432 12223333332 112222 247899999953
No 310
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.15 E-value=2.4e-06 Score=71.68 Aligned_cols=55 Identities=22% Similarity=0.256 Sum_probs=36.8
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCccc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~ 274 (316)
.+|+++|.+|||||||+|++..... +...+.|+.+. ..+..+. .+.|+||||...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQ 61 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCccc
Confidence 4799999999999999999996542 23333444332 2222332 356899999753
No 311
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.14 E-value=1.7e-05 Score=68.96 Aligned_cols=95 Identities=14% Similarity=0.112 Sum_probs=72.9
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--C-CCEEEEEEccCCCChHhHHHHHHHHHhc--
Q 021210 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N-RKRILVLNREDMISMADRNAWATYFAKQ-- 175 (316)
Q Consensus 101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~-k~~IlVlNK~DLv~~~~~~~~~~~~~~~-- 175 (316)
=.+||| .++...+....+.++-+|+++|.+.+.+.....+.+++. + .|+++++||.||-+....++..+++...
T Consensus 73 fgtPGq-~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~ 151 (187)
T COG2229 73 FGTPGQ-ERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLELL 151 (187)
T ss_pred ecCCCc-HHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhccC
Confidence 457999 777777777788999999999999988876666777765 4 6899999999998654444555555543
Q ss_pred CceEEEeccccccchhhhHHH
Q 021210 176 GTKVIFSNGQLGMGTMKLSRL 196 (316)
Q Consensus 176 g~~vi~iSa~~g~gi~~L~~~ 196 (316)
..+++.+++..++|..+....
T Consensus 152 ~~~vi~~~a~e~~~~~~~L~~ 172 (187)
T COG2229 152 SVPVIEIDATEGEGARDQLDV 172 (187)
T ss_pred CCceeeeecccchhHHHHHHH
Confidence 578999999999987664443
No 312
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.14 E-value=2.5e-06 Score=78.67 Aligned_cols=56 Identities=30% Similarity=0.458 Sum_probs=48.7
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccc--cCCCCCceeeEEEEEeCCcEEEEeCCCc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCP--AAPRPGVTRVLKWVRFGKDLEFLDSPGI 272 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~--vs~~pgtT~~~~~~~~~~~~~liDTPGi 272 (316)
..++++.|.+|||||||||.++..+... .+..+|-|+.++.+..+..++++|.||+
T Consensus 136 ~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~ 193 (320)
T KOG2486|consen 136 RPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGY 193 (320)
T ss_pred CceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCc
Confidence 4679999999999999999999765433 3448999999999999999999999994
No 313
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.14 E-value=3.8e-06 Score=73.50 Aligned_cols=54 Identities=22% Similarity=0.270 Sum_probs=35.6
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGI 272 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi 272 (316)
||+++|.+|||||||+|++.+.........+.++.+. ..+.++. .+.|+||||-
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 60 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQ 60 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCc
Confidence 6999999999999999999876532212223222232 2233332 4789999995
No 314
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.14 E-value=8.3e-06 Score=69.40 Aligned_cols=97 Identities=13% Similarity=0.084 Sum_probs=62.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~ 172 (316)
+-++||+ .++.......++.+|.+++|+|+.+..... ...+...+ .+.|+++++||+|+....+.++..+.+
T Consensus 62 ~~D~~G~-~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l 140 (173)
T cd04155 62 VWDIGGQ-RAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEAL 140 (173)
T ss_pred EEECCCC-HHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHc
Confidence 3456776 445555556789999999999997642211 11222222 257999999999997654333333333
Q ss_pred HhcC-----ceEEEeccccccchhhhHHHH
Q 021210 173 AKQG-----TKVIFSNGQLGMGTMKLSRLA 197 (316)
Q Consensus 173 ~~~g-----~~vi~iSa~~g~gi~~L~~~L 197 (316)
.-.. ..++.+||++|.|++++.+.+
T Consensus 141 ~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 170 (173)
T cd04155 141 NLHDLRDRTWHIQACSAKTGEGLQEGMNWV 170 (173)
T ss_pred CCcccCCCeEEEEEeECCCCCCHHHHHHHH
Confidence 2111 246789999999999887765
No 315
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.14 E-value=2.4e-06 Score=71.61 Aligned_cols=53 Identities=25% Similarity=0.263 Sum_probs=36.1
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeC---CcEEEEeCCCcc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG---KDLEFLDSPGII 273 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~---~~~~liDTPGi~ 273 (316)
||+++|.+|||||||+|++..... +....+++.+. .....+ ..+.++||||..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 59 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQE 59 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--ccccCCcchhhEEEEEEECCEEEEEEEEECCChh
Confidence 689999999999999999996542 23444444332 112222 247899999964
No 316
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.14 E-value=1.3e-05 Score=69.71 Aligned_cols=100 Identities=11% Similarity=0.057 Sum_probs=64.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhC-CCCEEEEEEccCCCChHhH--HHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-NRKRILVLNREDMISMADR--NAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~-~k~~IlVlNK~DLv~~~~~--~~~~~~ 171 (316)
+-++||+ .++.......++.+|++|+|+|..++.+..+. .+..+.. ..|+++|.||+|+.+.... .....+
T Consensus 53 i~Dt~g~-~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~ 131 (188)
T cd04125 53 IWDTNGQ-ERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSF 131 (188)
T ss_pred EEECCCc-HHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHH
Confidence 3456776 45555566778999999999999765432211 1111112 4689999999999743221 111222
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
....+..++.+||++|.|++++.+.+...
T Consensus 132 ~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 132 CDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred HHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 33456789999999999999887765443
No 317
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.14 E-value=2.3e-06 Score=72.89 Aligned_cols=54 Identities=28% Similarity=0.244 Sum_probs=35.5
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCc----eeeEEEEEeCCcEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGV----TRVLKWVRFGKDLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgt----T~~~~~~~~~~~~~liDTPGi~ 273 (316)
+||+++|.+|||||||+|++.+.... +..|.+ |.........-.+.++||||..
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 58 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFP--ENVPRVLPEITIPADVTPERVPTTIVDTSSRP 58 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC--ccCCCcccceEeeeeecCCeEEEEEEeCCCch
Confidence 37999999999999999999976532 223332 2221111112247899999975
No 318
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.13 E-value=3.7e-06 Score=76.62 Aligned_cols=60 Identities=30% Similarity=0.473 Sum_probs=47.5
Q ss_pred ccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE---EEEeCCcEEEEeCCCcccC
Q 021210 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK---WVRFGKDLEFLDSPGIIPM 275 (316)
Q Consensus 215 ~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~---~~~~~~~~~liDTPGi~~~ 275 (316)
....+|++||+|.||||||+..|+... ...+.+-+||.... ..+.+..++++|-|||+..
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~-SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieG 122 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTH-SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEG 122 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcch-hhhhceeeeEEEeecceEEecCceEEEecCcccccc
Confidence 345789999999999999999999765 46666778887642 2334778999999999864
No 319
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.13 E-value=5.1e-06 Score=70.36 Aligned_cols=55 Identities=24% Similarity=0.397 Sum_probs=35.2
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (316)
+||+++|.+|||||||+|+|.+... .....+..+.+. ..+..+. .+.++||||..
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 60 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQE 60 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CcCcCCccceEEEEEEEEECCEEEEEEEEeCCChH
Confidence 3799999999999999999997653 222222222222 2222222 35689999964
No 320
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.12 E-value=4.7e-06 Score=72.48 Aligned_cols=55 Identities=22% Similarity=0.350 Sum_probs=37.0
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCC--CceeeEEEEEe----CCcEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVRF----GKDLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p--gtT~~~~~~~~----~~~~~liDTPGi~ 273 (316)
.++|+++|.+|||||||+|++...... ...| |.+.....+.. +-.+.++||||..
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 63 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV--NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQE 63 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC--CcCCccccceeEEEeeccCCCceEEEEEECCCcH
Confidence 468999999999999999999876533 2233 32222222221 2257899999974
No 321
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.12 E-value=2.9e-06 Score=72.92 Aligned_cols=55 Identities=24% Similarity=0.322 Sum_probs=35.9
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeC---CcEEEEeCCCccc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFG---KDLEFLDSPGIIP 274 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~---~~~~liDTPGi~~ 274 (316)
.+|+++|.+|||||||+|++++... . .....++.. ...+..+ -.+.++||||...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 61 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF-V-ESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDE 61 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-c-cccCcchhhhEEEEEEECCEEEEEEEEECCChHh
Confidence 3699999999999999999997652 2 222233322 1122222 2367999999753
No 322
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.12 E-value=2.3e-06 Score=70.03 Aligned_cols=98 Identities=16% Similarity=0.086 Sum_probs=59.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCC-------CCcHHHHHHhC-CCCEEEEEEccCCCChHhHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS-------TTHPLMDQWLG-NRKRILVLNREDMISMADRNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~-------~~~~~i~~~l~-~k~~IlVlNK~DLv~~~~~~~~~~~ 171 (316)
+-++||+ .++.........+++.++.++|...... .....+..... +.|+++++||+|+..........+.
T Consensus 54 ~~D~~G~-~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 132 (161)
T TIGR00231 54 LLDTAGQ-EDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFL 132 (161)
T ss_pred EEECCCc-ccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHH
Confidence 4567887 3333333344556666666666554421 11222333333 6799999999999865433333334
Q ss_pred HHhcC-ceEEEeccccccchhhhHHHHH
Q 021210 172 FAKQG-TKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 172 ~~~~g-~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
+...+ ..++++||++|.|+.++.+.++
T Consensus 133 ~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 133 FAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred HhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 44333 5689999999999999887654
No 323
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.11 E-value=2.7e-06 Score=70.87 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=37.8
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeC---CcEEEEeCCCccc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG---KDLEFLDSPGIIP 274 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~---~~~~liDTPGi~~ 274 (316)
||+++|.+|||||||+|+|++.. ..+....+|.+.. .+..+ -.+.++||||...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 59 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE 59 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH
Confidence 48999999999999999999765 3444445554432 22333 2467999999753
No 324
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.11 E-value=1.3e-05 Score=64.52 Aligned_cols=97 Identities=15% Similarity=-0.068 Sum_probs=65.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHH-----H--HhCCCCEEEEEEccCCCChHhHHHH---H
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMD-----Q--WLGNRKRILVLNREDMISMADRNAW---A 169 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~-----~--~l~~k~~IlVlNK~DLv~~~~~~~~---~ 169 (316)
+-++||+. .........+..+|.+++|+|+..+....+.... . ...++|+++++||+|+.+....... .
T Consensus 49 l~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~ 127 (157)
T cd00882 49 IWDTAGQE-RFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAE 127 (157)
T ss_pred EEecCChH-HHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHH
Confidence 55678873 3444556778999999999999876543332211 1 1237899999999999866543332 1
Q ss_pred HHHHhcCceEEEeccccccchhhhHHHH
Q 021210 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (316)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~L 197 (316)
......+..++.+|+.++.|++++.+.+
T Consensus 128 ~~~~~~~~~~~~~s~~~~~~i~~~~~~l 155 (157)
T cd00882 128 QLAKELGVPYFETSAKTGENVEELFEEL 155 (157)
T ss_pred HHHhhcCCcEEEEecCCCCChHHHHHHH
Confidence 1222334678999999999998887765
No 325
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.11 E-value=4.6e-06 Score=71.56 Aligned_cols=55 Identities=18% Similarity=0.267 Sum_probs=37.8
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (316)
.++|+++|.+|||||||+++|...... ...|.++.+...+.. ...+.++||||..
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~--~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~ 64 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV--TTIPTVGFNVETVTYKNVKFNVWDVGGQD 64 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc--cccCCcccceEEEEECCEEEEEEECCCCH
Confidence 468999999999999999999865432 223433333322222 3358899999985
No 326
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.11 E-value=5.3e-06 Score=71.06 Aligned_cols=96 Identities=15% Similarity=-0.043 Sum_probs=61.2
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHH----hCCCCEEEEEEccCCCChHh----------
Q 021210 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMISMAD---------- 164 (316)
Q Consensus 101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~----l~~k~~IlVlNK~DLv~~~~---------- 164 (316)
-++||+ .++.......++.+|.+|+|+|..++.+..+. .+... ..+.|+++|.||+|+.+...
T Consensus 53 ~Dt~G~-~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 131 (173)
T cd04130 53 CDTAGQ-DEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGE 131 (173)
T ss_pred EECCCC-hhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCC
Confidence 445666 33433333467899999999999876443221 12211 13579999999999974321
Q ss_pred ----HHHHHHHHHhcCc-eEEEeccccccchhhhHHHH
Q 021210 165 ----RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLA 197 (316)
Q Consensus 165 ----~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~L 197 (316)
.++..++.++.+. .++.+||++|.|++++.+.+
T Consensus 132 ~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~ 169 (173)
T cd04130 132 KPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTA 169 (173)
T ss_pred CCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHH
Confidence 1122233344454 78999999999999987653
No 327
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.10 E-value=5.4e-06 Score=72.11 Aligned_cols=56 Identities=29% Similarity=0.375 Sum_probs=37.1
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccc-cCCCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~-vs~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (316)
++|+++|.+|||||||+|++.+..... ..+..|.+.....+.++. .+.++||||..
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~ 60 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQE 60 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH
Confidence 369999999999999999999765322 222223333333344432 35799999964
No 328
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.10 E-value=6.1e-06 Score=69.80 Aligned_cols=56 Identities=23% Similarity=0.296 Sum_probs=35.8
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee-EEEEEeC---CcEEEEeCCCccc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LKWVRFG---KDLEFLDSPGIIP 274 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~-~~~~~~~---~~~~liDTPGi~~ 274 (316)
+||+++|.+|||||||+|+|.+.+. .....|..... ....... -.+.++||||...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~ 60 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKF-PTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEE 60 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCccc
Confidence 4799999999999999999997763 22222221111 1111111 2478999999763
No 329
>PLN03108 Rab family protein; Provisional
Probab=98.09 E-value=2.6e-05 Score=69.47 Aligned_cols=100 Identities=10% Similarity=0.032 Sum_probs=64.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMAD--RNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~l----~~k~~IlVlNK~DLv~~~~--~~~~~~~ 171 (316)
+-++||+ ..+.......+..+|.+++|+|+.++.+..+. .+.... ...|+++|.||+||..... .++..++
T Consensus 59 l~Dt~G~-~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~ 137 (210)
T PLN03108 59 IWDTAGQ-ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQF 137 (210)
T ss_pred EEeCCCc-HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHH
Confidence 4456776 45555556778899999999999765433221 111111 2578999999999975321 2222333
Q ss_pred HHhcCceEEEeccccccchhhhHH-HHHHh
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSR-LAKAL 200 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~-~L~~l 200 (316)
.+..+..++.+||+++.|++++.+ +++.+
T Consensus 138 ~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 138 AKEHGLIFMEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 445567889999999999998654 33343
No 330
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.09 E-value=1.5e-05 Score=71.17 Aligned_cols=100 Identities=17% Similarity=0.043 Sum_probs=65.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhC--CCCEEEEEEccCCCChHh--HHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMISMAD--RNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~--~k~~IlVlNK~DLv~~~~--~~~~~~ 170 (316)
+-++||+ .++.......+.++|.+|+|+|..++.+..+ ..+..... ..++++|.||+|+.+..+ .++..+
T Consensus 56 i~Dt~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~ 134 (211)
T cd04111 56 LWDTAGQ-ERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEK 134 (211)
T ss_pred EEeCCcc-hhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHH
Confidence 3466887 4555555577899999999999987643222 11111121 345788999999975322 112222
Q ss_pred HHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
+.+..+..++.+||++|.|++++.+.+.+.
T Consensus 135 ~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~ 164 (211)
T cd04111 135 LAKDLGMKYIETSARTGDNVEEAFELLTQE 164 (211)
T ss_pred HHHHhCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 333456788999999999999988876653
No 331
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.09 E-value=4.6e-06 Score=70.22 Aligned_cols=53 Identities=23% Similarity=0.340 Sum_probs=34.9
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (316)
||+++|.+|||||||+|+|....... ..|.+..+...+.. +..+.++||||..
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~i~Dt~G~~ 54 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT--TIPTIGFNVETVTYKNLKFQVWDLGGQT 54 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC--cCCccCcCeEEEEECCEEEEEEECCCCH
Confidence 48999999999999999997655332 22321111212222 3457899999975
No 332
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.09 E-value=6.4e-06 Score=70.14 Aligned_cols=55 Identities=25% Similarity=0.302 Sum_probs=36.4
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeC---CcEEEEeCCCccc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG---KDLEFLDSPGIIP 274 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~---~~~~liDTPGi~~ 274 (316)
.+|+++|.+|||||||+|++.+.... .....|+.+. ..+..+ ..+.++||||...
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 61 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI--ESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQ 61 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEeCCCccc
Confidence 47999999999999999999866532 2222333221 222232 2467999999754
No 333
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.09 E-value=3.8e-06 Score=71.35 Aligned_cols=54 Identities=28% Similarity=0.336 Sum_probs=35.4
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCC---CceeeEEEEEeC---CcEEEEeCCCccc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP---GVTRVLKWVRFG---KDLEFLDSPGIIP 274 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p---gtT~~~~~~~~~---~~~~liDTPGi~~ 274 (316)
++|+++|.+|||||||+|++++.... ....| .+++. .+..+ ..+.++||||...
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~--~~~~~~~~~~l~i~Dt~G~~~ 61 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFR-ESYIPTIEDTYRQ--VISCSKNICTLQITDTTGSHQ 61 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-CCcCCcchheEEE--EEEECCEEEEEEEEECCCCCc
Confidence 57999999999999999999976532 12122 22221 11221 2477999999853
No 334
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.09 E-value=4.3e-06 Score=71.78 Aligned_cols=86 Identities=19% Similarity=0.151 Sum_probs=55.4
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh---CCCCEEEEEEccCCCChHhH--HHHHHHHHhcCc-eEEEeccccc
Q 021210 115 KDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL---GNRKRILVLNREDMISMADR--NAWATYFAKQGT-KVIFSNGQLG 187 (316)
Q Consensus 115 ~~~i~~aDlIl~VvDar~~~~~~~-~~i~~~l---~~k~~IlVlNK~DLv~~~~~--~~~~~~~~~~g~-~vi~iSa~~g 187 (316)
...++++|++|+|+|+.++.+..+ ..+...+ .+.|+++|+||+|+.+.... .+..++.+..+. .++.+||++|
T Consensus 72 ~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (169)
T cd01892 72 DAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLG 151 (169)
T ss_pred hhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccC
Confidence 345789999999999976533211 1222222 25799999999999654321 111222233443 3689999999
Q ss_pred cchhhhHHHHHHh
Q 021210 188 MGTMKLSRLAKAL 200 (316)
Q Consensus 188 ~gi~~L~~~L~~l 200 (316)
.|++++.+.+.+.
T Consensus 152 ~~v~~lf~~l~~~ 164 (169)
T cd01892 152 DSSNELFTKLATA 164 (169)
T ss_pred ccHHHHHHHHHHH
Confidence 9999987776554
No 335
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=1.5e-05 Score=81.72 Aligned_cols=103 Identities=25% Similarity=0.214 Sum_probs=72.5
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCC------hH--------
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS------MA-------- 163 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~------~~-------- 163 (316)
+.++||| ..|+..=....+.||++|+|+|..+++...-.+-.++|+ +.|+|+++||+|.+= ..
T Consensus 544 vIdtpgh-EsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkk 622 (1064)
T KOG1144|consen 544 VIDTPGH-ESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKK 622 (1064)
T ss_pred EecCCCc-hhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHH
Confidence 7789999 556655457789999999999999887654433344454 679999999999651 11
Q ss_pred ----hHHHHH-------HHHHhcC---------------ceEEEeccccccchhhhHHHHHHhhhh
Q 021210 164 ----DRNAWA-------TYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAKALASD 203 (316)
Q Consensus 164 ----~~~~~~-------~~~~~~g---------------~~vi~iSa~~g~gi~~L~~~L~~l~~~ 203 (316)
-++++. -.|..+| +.++|+||..|+|+-+|.-+|.++.+.
T Consensus 623 Q~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk 688 (1064)
T KOG1144|consen 623 QKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQK 688 (1064)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHH
Confidence 012222 1233333 246899999999999999988887653
No 336
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.08 E-value=1.2e-05 Score=69.56 Aligned_cols=97 Identities=11% Similarity=-0.061 Sum_probs=61.5
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHH----hCCCCEEEEEEccCCCChHhH----------
Q 021210 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMISMADR---------- 165 (316)
Q Consensus 102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~----l~~k~~IlVlNK~DLv~~~~~---------- 165 (316)
+++|+ .++.......+..+|++|+|+|..++.+..+. .+... ..+.|+++|.||+|+.+..+.
T Consensus 55 Dt~G~-~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~ 133 (175)
T cd01874 55 DTAGQ-EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQK 133 (175)
T ss_pred ECCCc-cchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCC
Confidence 45666 44444334567899999999999876543322 12222 235799999999998654221
Q ss_pred ----HHHHHHHHhcC-ceEEEeccccccchhhhHHHHHH
Q 021210 166 ----NAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 166 ----~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
++-.+..++.+ ..++.+||++|.|++++.+.+..
T Consensus 134 ~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 134 PITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred CcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 11111222344 57899999999999988766543
No 337
>PRK12740 elongation factor G; Reviewed
Probab=98.07 E-value=3.4e-05 Score=80.46 Aligned_cols=90 Identities=16% Similarity=0.028 Sum_probs=67.7
Q ss_pred CCCcchhhhhhccccCCcceEEEecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--C
Q 021210 71 NGSIEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--G 146 (316)
Q Consensus 71 ~~~~g~~~e~e~~~~~d~~~~~~~~~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~ 146 (316)
.+.|-...|++.+++++.....+..... .+-++||| .++...+...+..+|++++|+|+..+.......+...+ .
T Consensus 33 ~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~-~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~ 111 (668)
T PRK12740 33 TTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGH-VDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKY 111 (668)
T ss_pred ccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCc-HHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc
Confidence 4566677899999999887775554433 36789999 55777788889999999999999887654443333333 2
Q ss_pred CCCEEEEEEccCCCC
Q 021210 147 NRKRILVLNREDMIS 161 (316)
Q Consensus 147 ~k~~IlVlNK~DLv~ 161 (316)
+.|.++|+||+|+..
T Consensus 112 ~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 112 GVPRIIFVNKMDRAG 126 (668)
T ss_pred CCCEEEEEECCCCCC
Confidence 689999999999863
No 338
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.07 E-value=5.4e-06 Score=69.15 Aligned_cols=55 Identities=25% Similarity=0.388 Sum_probs=35.8
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (316)
+||+++|.+|||||||+|+|.+..... ...+.++... ..+.... .+.++||||-.
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 60 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCEEEEEEEEECCchH
Confidence 369999999999999999999765322 2222232222 2222222 47799999953
No 339
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.07 E-value=1.1e-05 Score=72.61 Aligned_cols=98 Identities=12% Similarity=-0.051 Sum_probs=63.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHh
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLGNRKRILVLNREDMISMADRNAWATYFAK 174 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~ 174 (316)
+-+++|. .++..........+|.+|+|+|..+..+..+. .+.....+.|+++|.||+|+.+.....+..++...
T Consensus 66 i~Dt~G~-~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~ 144 (219)
T PLN03071 66 CWDTAGQ-EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK 144 (219)
T ss_pred EEECCCc-hhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHh
Confidence 3456776 44444334567899999999999875433221 11122236799999999998643211111233344
Q ss_pred cCceEEEeccccccchhhhHHHHH
Q 021210 175 QGTKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 175 ~g~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
.+..++.+||++|.|++++...+.
T Consensus 145 ~~~~~~e~SAk~~~~i~~~f~~l~ 168 (219)
T PLN03071 145 KNLQYYEISAKSNYNFEKPFLYLA 168 (219)
T ss_pred cCCEEEEcCCCCCCCHHHHHHHHH
Confidence 557789999999999998876554
No 340
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.06 E-value=8.8e-06 Score=69.05 Aligned_cols=54 Identities=22% Similarity=0.350 Sum_probs=36.5
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCcee---eEEEEEeCC---cEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR---VLKWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~---~~~~~~~~~---~~~liDTPGi~ 273 (316)
+||+++|.+|||||||+|++.+... ....+.|+. ....+..+. .+.++||||..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 62 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE 62 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCCCCcccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 5799999999999999999987643 223333322 122333432 46899999964
No 341
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.06 E-value=4.8e-05 Score=70.72 Aligned_cols=86 Identities=14% Similarity=0.043 Sum_probs=62.7
Q ss_pred hhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEE
Q 021210 76 AYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRI 151 (316)
Q Consensus 76 ~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~I 151 (316)
...|++.+.++......|.....+ +-++||| .++...+...+..+|.+|+|+|+..+.......+.++. .+.|++
T Consensus 49 ~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~-~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~i 127 (267)
T cd04169 49 MEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH-EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPII 127 (267)
T ss_pred cHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc-hHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEE
Confidence 456777777777776655554433 6678999 56777788889999999999999877543333343333 378999
Q ss_pred EEEEccCCCCh
Q 021210 152 LVLNREDMISM 162 (316)
Q Consensus 152 lVlNK~DLv~~ 162 (316)
+++||+|+...
T Consensus 128 ivvNK~D~~~a 138 (267)
T cd04169 128 TFINKLDREGR 138 (267)
T ss_pred EEEECCccCCC
Confidence 99999998644
No 342
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.06 E-value=1.3e-05 Score=84.59 Aligned_cols=59 Identities=31% Similarity=0.509 Sum_probs=45.7
Q ss_pred ccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCccc
Q 021210 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (316)
Q Consensus 215 ~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~ 274 (316)
.++..|+++|.+|+|||||+++|.+... ..+..+|+|.+...+.+ +..+.|+||||...
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v-~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~ 349 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNV-AAGEAGGITQHIGAYQVETNGGKITFLDTPGHEA 349 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCc-cccccCceeeeccEEEEEECCEEEEEEECCCCcc
Confidence 4567899999999999999999987553 44556788887654433 45689999999754
No 343
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.05 E-value=2.1e-05 Score=69.60 Aligned_cols=84 Identities=14% Similarity=-0.008 Sum_probs=54.6
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCcH-H----HHHHh----CCCCEEEEEEccCCCChHh--HHHHHHHHH-hcCceEEEe
Q 021210 115 KDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWL----GNRKRILVLNREDMISMAD--RNAWATYFA-KQGTKVIFS 182 (316)
Q Consensus 115 ~~~i~~aDlIl~VvDar~~~~~~~~-~----i~~~l----~~k~~IlVlNK~DLv~~~~--~~~~~~~~~-~~g~~vi~i 182 (316)
...++.+|++|+|+|+.++.+..+. . +.+.. .+.|+++|.||+|+..... .++..+... ..+..++++
T Consensus 75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~ 154 (198)
T cd04142 75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLEC 154 (198)
T ss_pred HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEe
Confidence 3457899999999999876433221 1 11111 3579999999999964321 111112222 235678999
Q ss_pred ccccccchhhhHHHHH
Q 021210 183 NGQLGMGTMKLSRLAK 198 (316)
Q Consensus 183 Sa~~g~gi~~L~~~L~ 198 (316)
||++|.|+++|.+.+.
T Consensus 155 Sak~g~~v~~lf~~i~ 170 (198)
T cd04142 155 SAKYNWHILLLFKELL 170 (198)
T ss_pred cCCCCCCHHHHHHHHH
Confidence 9999999998876544
No 344
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.05 E-value=3.2e-05 Score=65.71 Aligned_cols=97 Identities=7% Similarity=-0.061 Sum_probs=63.4
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHH---HHh-----CCCCEEEEEEccCCCChHh-HHHHH
Q 021210 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD---QWL-----GNRKRILVLNREDMISMAD-RNAWA 169 (316)
Q Consensus 101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~---~~l-----~~k~~IlVlNK~DLv~~~~-~~~~~ 169 (316)
-++||+ .++.......+..+|.+++|+|..++.+.... .+. ... .+.|+++|.||+|+..... .++..
T Consensus 59 ~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 137 (170)
T cd04116 59 WDTAGQ-ERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQ 137 (170)
T ss_pred EeCCCh-HHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHH
Confidence 367887 55655556778999999999998765432221 111 111 1358999999999864321 22233
Q ss_pred HHHHhcC-ceEEEeccccccchhhhHHHHH
Q 021210 170 TYFAKQG-TKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 170 ~~~~~~g-~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
++..+.+ ..++.+||++|.|+.++.+.+.
T Consensus 138 ~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~ 167 (170)
T cd04116 138 AWCRENGDYPYFETSAKDATNVAAAFEEAV 167 (170)
T ss_pred HHHHHCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3344455 4688999999999988776543
No 345
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.05 E-value=2e-05 Score=83.21 Aligned_cols=81 Identities=21% Similarity=0.084 Sum_probs=57.9
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCChHhHHHHHHHH-HhcCceEEEeccccccchhhhHH
Q 021210 119 KLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSR 195 (316)
Q Consensus 119 ~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~~~~~~~~~~~-~~~g~~vi~iSa~~g~gi~~L~~ 195 (316)
..+|+++.|+|+.+.. ++..+...+ .++|+++|+||+|+.++.......+.+ +++|.+++++|+++|+|+++|++
T Consensus 84 ~~aD~vI~VvDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~ 161 (772)
T PRK09554 84 GDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALKL 161 (772)
T ss_pred cCCCEEEEEecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHHH
Confidence 4799999999998642 233332222 278999999999987543322222223 34678899999999999999998
Q ss_pred HHHHhh
Q 021210 196 LAKALA 201 (316)
Q Consensus 196 ~L~~l~ 201 (316)
.+.+..
T Consensus 162 ~I~~~~ 167 (772)
T PRK09554 162 AIDRHQ 167 (772)
T ss_pred HHHHhh
Confidence 877654
No 346
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.04 E-value=9e-06 Score=69.27 Aligned_cols=54 Identities=20% Similarity=0.185 Sum_probs=35.4
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (316)
+||+++|.+|+|||||+|++.+... ......++.+. ..+.++. .+.++||||-.
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 59 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE 59 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcc
Confidence 3799999999999999999987653 22222233322 1223332 25689999974
No 347
>PRK12735 elongation factor Tu; Reviewed
Probab=98.04 E-value=7e-06 Score=80.43 Aligned_cols=58 Identities=22% Similarity=0.361 Sum_probs=42.3
Q ss_pred cceEEeEeccCCCCcchhHHhhhcC------cccc---------cCCCCCceeeEEEEEe---CCcEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKR------RMCP---------AAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~------~~~~---------vs~~pgtT~~~~~~~~---~~~~~liDTPGi~ 273 (316)
..++|+++|.+|+|||||+|+|++. .... -....|+|.+...... +..+.|+||||..
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~ 86 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA 86 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH
Confidence 4688999999999999999999852 1110 1124689988754444 3468999999963
No 348
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.03 E-value=9.8e-06 Score=68.85 Aligned_cols=56 Identities=23% Similarity=0.306 Sum_probs=36.2
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (316)
.++|+++|.+|||||||+|++.+... .....+..+.+. ..+..+. .+.|+||||-.
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~ 65 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKF-DTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE 65 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC-CcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChH
Confidence 47899999999999999999986542 222223222221 2223322 36789999953
No 349
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.03 E-value=1.7e-05 Score=67.75 Aligned_cols=97 Identities=10% Similarity=0.035 Sum_probs=61.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~ 172 (316)
+-++||+ .++.......+..+|++++|+|+.+..+..+ ..+..++ .++|+++|+||+|+.......+..+.+
T Consensus 47 i~D~~G~-~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~ 125 (167)
T cd04161 47 IFDLGGG-ANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYL 125 (167)
T ss_pred EEECCCc-HHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhc
Confidence 5667888 4455555678899999999999987542211 1222222 257999999999986543222232221
Q ss_pred -----H-hcC--ceEEEeccccc------cchhhhHHHH
Q 021210 173 -----A-KQG--TKVIFSNGQLG------MGTMKLSRLA 197 (316)
Q Consensus 173 -----~-~~g--~~vi~iSa~~g------~gi~~L~~~L 197 (316)
. +.+ ..++.+||++| .|+.+-.+.|
T Consensus 126 ~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl 164 (167)
T cd04161 126 SLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWL 164 (167)
T ss_pred CcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHH
Confidence 1 112 35677999998 6766655554
No 350
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.02 E-value=7e-06 Score=70.23 Aligned_cols=52 Identities=27% Similarity=0.294 Sum_probs=36.6
Q ss_pred EeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (316)
Q Consensus 220 i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (316)
|+++|.+|||||||+|+|.+.......+..|.++. .+.. +..+.++||||-.
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~--~~~~~~~~~~i~D~~G~~ 54 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPT--KLRLDKYEVCIFDLGGGA 54 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCccccCcccceEE--EEEECCEEEEEEECCCcH
Confidence 78999999999999999997633333444454432 2222 3457899999964
No 351
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.02 E-value=3e-05 Score=70.65 Aligned_cols=98 Identities=11% Similarity=0.004 Sum_probs=64.9
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH------HHHHHhCCCCEEEEEEccCCCCh------------
Q 021210 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDMISM------------ 162 (316)
Q Consensus 101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~------~i~~~l~~k~~IlVlNK~DLv~~------------ 162 (316)
-+++|. .++.......+..+|++|+|+|..+..+..+. .+.....+.|+++|.||+||...
T Consensus 66 wDTaG~-e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~ 144 (232)
T cd04174 66 WDTSGS-PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQ 144 (232)
T ss_pred EeCCCc-hhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccC
Confidence 345675 55555455678999999999999876544321 12222236789999999998531
Q ss_pred H--hHHHHHHHHHhcCc-eEEEecccccc-chhhhHHHHHH
Q 021210 163 A--DRNAWATYFAKQGT-KVIFSNGQLGM-GTMKLSRLAKA 199 (316)
Q Consensus 163 ~--~~~~~~~~~~~~g~-~vi~iSa~~g~-gi~~L~~~L~~ 199 (316)
. ..++..++.++.+. .++.+||++|. |++++...+..
T Consensus 145 ~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~ 185 (232)
T cd04174 145 APISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASL 185 (232)
T ss_pred CcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHH
Confidence 0 12233344455676 58899999997 79988766543
No 352
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.02 E-value=1.9e-05 Score=68.23 Aligned_cols=98 Identities=15% Similarity=-0.012 Sum_probs=62.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----CCCCEEEEEEccCCCChHh---------
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMAD--------- 164 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~l----~~k~~IlVlNK~DLv~~~~--------- 164 (316)
+-++||. .++.......+..+|++|+|+|..++.+..+. .+...+ .+.|+++|.||+||.+...
T Consensus 53 i~Dt~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~ 131 (174)
T cd01871 53 LWDTAGQ-EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 131 (174)
T ss_pred EEECCCc-hhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhcc
Confidence 4456776 44444444567899999999999876443321 121211 2579999999999964211
Q ss_pred -----HHHHHHHHHhcC-ceEEEeccccccchhhhHHHHH
Q 021210 165 -----RNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 165 -----~~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
.++-.+..++.+ ..++.+||++|.|++++.+.+.
T Consensus 132 ~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~ 171 (174)
T cd01871 132 LTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAI 171 (174)
T ss_pred CCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHH
Confidence 111112233444 4788999999999999876653
No 353
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.02 E-value=9.9e-06 Score=68.65 Aligned_cols=56 Identities=29% Similarity=0.393 Sum_probs=34.5
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccC-CCCCceeeEEEEEeC-C--cEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRPGVTRVLKWVRFG-K--DLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs-~~pgtT~~~~~~~~~-~--~~~liDTPGi~ 273 (316)
++|+++|.+|||||||++++.+....... +..+.+........+ . .+.++||||-.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 60 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCch
Confidence 47999999999999999999865432111 111112111122222 2 36799999964
No 354
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.01 E-value=7.2e-06 Score=84.13 Aligned_cols=59 Identities=25% Similarity=0.411 Sum_probs=45.4
Q ss_pred CccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CC-cEEEEeCCCcc
Q 021210 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GK-DLEFLDSPGII 273 (316)
Q Consensus 214 ~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~-~~~liDTPGi~ 273 (316)
..++.+|+++|.+|+|||||+|+|.+... ..+..+|+|.+...+.+ +. .+.|+||||-.
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v-~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe 146 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKV-AQGEAGGITQHIGAYHVENEDGKMITFLDTPGHE 146 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCc-ccccCCceeecceEEEEEECCCcEEEEEECCCCc
Confidence 34567899999999999999999997653 44556788888644332 33 79999999964
No 355
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.01 E-value=1.7e-05 Score=67.54 Aligned_cols=99 Identities=15% Similarity=0.073 Sum_probs=61.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH------HHHHHhCCCCEEEEEEccCCCChHhH--------
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDMISMADR-------- 165 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~------~i~~~l~~k~~IlVlNK~DLv~~~~~-------- 165 (316)
+-++||+ .++.......+..+|++++|+|..+..+..+. .+.....+.|+++|.||+|+.+....
T Consensus 53 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~ 131 (175)
T cd01870 53 LWDTAGQ-EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMK 131 (175)
T ss_pred EEeCCCc-hhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhcc
Confidence 3356776 33443333557899999999998765322111 11112247899999999998753221
Q ss_pred ------HHHHHHHHhcC-ceEEEeccccccchhhhHHHHHH
Q 021210 166 ------NAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 166 ------~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
.+-.+.....+ ..++.+||++|.|++++.+.+..
T Consensus 132 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~ 172 (175)
T cd01870 132 QEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATR 172 (175)
T ss_pred CCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHH
Confidence 11111122233 46899999999999998877653
No 356
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.01 E-value=4.8e-05 Score=65.30 Aligned_cols=102 Identities=12% Similarity=-0.044 Sum_probs=65.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh--CCCCEEEEEEccCCCChHh--HHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL--GNRKRILVLNREDMISMAD--RNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~ 170 (316)
+-++||+ .++...-......+|.+++|+|..+..+... ..+.+.. .+.|+++|.||+|+....+ ......
T Consensus 53 l~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~ 131 (180)
T cd04137 53 IVDTAGQ-DEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKE 131 (180)
T ss_pred EEECCCh-HhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHH
Confidence 4467887 4444444467788999999999876432111 1112212 2569999999999874322 122223
Q ss_pred HHHhcCceEEEeccccccchhhhHHHHHHhhh
Q 021210 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (316)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~~ 202 (316)
.....+..++.+||+++.|+.++...+.+...
T Consensus 132 ~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (180)
T cd04137 132 LAESWGAAFLESSARENENVEEAFELLIEEIE 163 (180)
T ss_pred HHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 33444567899999999999998877665443
No 357
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.01 E-value=6.4e-06 Score=77.49 Aligned_cols=143 Identities=17% Similarity=0.160 Sum_probs=97.9
Q ss_pred CCCCCeeEEecCCCCCcCCCC-CCCCCCCc-chhhhhhccccCCcc----------eEEEeccccccccccchHHHHHHH
Q 021210 46 SSSAPIIQTVGGKQSSWHGGN-SNNSNGSI-EAYEEECDWADLDAD----------LYYWTKSLRPVQWYPGHIAKTEKE 113 (316)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-g~~~e~e~~~~~d~~----------~~~~~~~~~~i~~~Pgh~~~~~r~ 113 (316)
..+.|.|.++|-.-. |+ .-...+++ -+..++.++.|+|+. ...|++...++++.|-|...+++.
T Consensus 175 ~~s~pviavVGYTNa----GKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~A 250 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNA----GKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQA 250 (410)
T ss_pred cCCCceEEEEeecCc----cHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHH
Confidence 345668899885211 11 11222332 125678888888864 468899999999999999999999
Q ss_pred HHHHHhhcCeEEEEEeCCCCCCCCcHH-HHHHhC--C---C----CEEEEEEccCCCChHhHHHHHHHHHhcCceEEEec
Q 021210 114 LKDQLKLMDVVIEVRDARIPLSTTHPL-MDQWLG--N---R----KRILVLNREDMISMADRNAWATYFAKQGTKVIFSN 183 (316)
Q Consensus 114 l~~~i~~aDlIl~VvDar~~~~~~~~~-i~~~l~--~---k----~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iS 183 (316)
+.+.+..||++|+|+|..+|....+.. +..-+. + . ..+=|-||+|..+... .......+.+|
T Consensus 251 TLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~--------e~E~n~~v~is 322 (410)
T KOG0410|consen 251 TLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV--------EEEKNLDVGIS 322 (410)
T ss_pred HHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC--------ccccCCccccc
Confidence 999999999999999999987654432 222222 1 1 2456788888654321 11112368999
Q ss_pred cccccchhhhHHHHHHh
Q 021210 184 GQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 184 a~~g~gi~~L~~~L~~l 200 (316)
|+.|+|.+++.+.+..-
T Consensus 323 altgdgl~el~~a~~~k 339 (410)
T KOG0410|consen 323 ALTGDGLEELLKAEETK 339 (410)
T ss_pred cccCccHHHHHHHHHHH
Confidence 99999999988776543
No 358
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.01 E-value=1.1e-05 Score=68.72 Aligned_cols=98 Identities=12% Similarity=-0.007 Sum_probs=60.5
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHH----HhCCCCEEEEEEccCCCChHhH--------
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQ----WLGNRKRILVLNREDMISMADR-------- 165 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~----~l~~k~~IlVlNK~DLv~~~~~-------- 165 (316)
+-++||+ .++...-......+|++++|+|..++.+..+. .+.. ...+.|+++|.||+|+.+....
T Consensus 52 i~Dt~G~-~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~ 130 (174)
T cd04135 52 LYDTAGQ-EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMK 130 (174)
T ss_pred EEeCCCc-ccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhcc
Confidence 3456776 33333333457889999999998765432211 1111 2236899999999998643211
Q ss_pred ------HHHHHHHHhcC-ceEEEeccccccchhhhHHHHH
Q 021210 166 ------NAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 166 ------~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
++-.+..++.+ ..++.+||++|.|++++.+.+.
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~ 170 (174)
T cd04135 131 EKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAI 170 (174)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHH
Confidence 11112233445 3688999999999998876543
No 359
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.01 E-value=1.2e-05 Score=70.93 Aligned_cols=56 Identities=23% Similarity=0.302 Sum_probs=36.3
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeCC---cEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~~---~~~liDTPGi~ 273 (316)
.++|+++|.+|||||||++++.+... .....|..+.+ ...+..+. .+.|+||||-.
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~ 66 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTF-SGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE 66 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-CCCcCccccceeEEEEEEECCEEEEEEEEeCCCch
Confidence 46899999999999999999987652 11222222222 22222222 46799999954
No 360
>PLN03110 Rab GTPase; Provisional
Probab=98.00 E-value=4.5e-05 Score=68.31 Aligned_cols=97 Identities=11% Similarity=0.044 Sum_probs=65.5
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------CCCCEEEEEEccCCCChHhH--HHHHH
Q 021210 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMADR--NAWAT 170 (316)
Q Consensus 101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--------~~k~~IlVlNK~DLv~~~~~--~~~~~ 170 (316)
-++||+ .++.......+..+|.+|+|+|..++.+..+ +..++ .+.|+++|.||+||....+. +....
T Consensus 66 ~Dt~G~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~ 142 (216)
T PLN03110 66 WDTAGQ-ERYRAITSAYYRGAVGALLVYDITKRQTFDN--VQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQA 142 (216)
T ss_pred EECCCc-HHHHHHHHHHhCCCCEEEEEEECCChHHHHH--HHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHH
Confidence 356787 5566666677899999999999987543322 22222 25789999999998643221 11222
Q ss_pred HHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
.....+..++.+||++|.|++++.+.+...
T Consensus 143 l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~ 172 (216)
T PLN03110 143 LAEKEGLSFLETSALEATNVEKAFQTILLE 172 (216)
T ss_pred HHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 223346789999999999999988766443
No 361
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=97.99 E-value=9.8e-06 Score=69.31 Aligned_cols=52 Identities=19% Similarity=0.276 Sum_probs=35.6
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEe-CCcEEEEeCCCccc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRF-GKDLEFLDSPGIIP 274 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~-~~~~~liDTPGi~~ 274 (316)
||+++|.+|||||||+|+|.+... .. +..|... ..+.. +..+.++||||...
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~--~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~ 55 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQ--PIPTIGFNVETVEYKNLKFTIWDVGGKHK 55 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CC--cCCcCceeEEEEEECCEEEEEEECCCChh
Confidence 489999999999999999987632 22 2334332 22222 33578999999753
No 362
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.99 E-value=6.3e-06 Score=76.73 Aligned_cols=56 Identities=20% Similarity=0.296 Sum_probs=38.8
Q ss_pred EEeEeccCCCCcchhHHhhhcCcc-----cccC------------CCCCceeeEEEEE---eCCcEEEEeCCCccc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRM-----CPAA------------PRPGVTRVLKWVR---FGKDLEFLDSPGIIP 274 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~-----~~vs------------~~pgtT~~~~~~~---~~~~~~liDTPGi~~ 274 (316)
+|+++|.+|+|||||+|+|+.... ..+. ...|+|++..... .+..+.++||||...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH
Confidence 489999999999999999973211 1111 2347887753332 255788999999864
No 363
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.99 E-value=6.4e-06 Score=77.13 Aligned_cols=58 Identities=24% Similarity=0.416 Sum_probs=34.5
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccC-CCC------CceeeE--EEEEe-----CCcEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRP------GVTRVL--KWVRF-----GKDLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs-~~p------gtT~~~--~~~~~-----~~~~~liDTPGi~~ 274 (316)
.++|+++|.+|+|||||||+|.+....... ..+ ..|..+ ....+ .-++.++||||+-.
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd 75 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGD 75 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccc
Confidence 578999999999999999999987644432 111 011112 11222 12578999999864
No 364
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.99 E-value=1.3e-05 Score=68.40 Aligned_cols=55 Identities=22% Similarity=0.372 Sum_probs=35.8
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (316)
++|+++|.+|||||||+|++..... .....+..+.+. ..+..+. .+.++||||..
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 62 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRF-PERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCccccceeEEEEEEEEEECCeEEEEEEEeCCChH
Confidence 5799999999999999999986542 111222222221 2233322 47899999964
No 365
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.98 E-value=1.3e-05 Score=67.43 Aligned_cols=54 Identities=22% Similarity=0.283 Sum_probs=35.3
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (316)
++|+++|.+|||||||++++...... .....|+.+. ..+.++. .+.|+||||..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 60 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCchhheEEEEEEECCEEEEEEEEECCCcc
Confidence 47999999999999999999865432 2222233221 2233322 36789999964
No 366
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.98 E-value=4.3e-05 Score=75.02 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=83.1
Q ss_pred cchhhhhhccccCCcce--EEEeccccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHH-HhC-CCC
Q 021210 74 IEAYEEECDWADLDADL--YYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ-WLG-NRK 149 (316)
Q Consensus 74 ~g~~~e~e~~~~~d~~~--~~~~~~~~~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~-~l~-~k~ 149 (316)
|-.--|+|.++|+=+.. +.|....=-|-++||| +.+--+....++..|-++++|||..++...-.++.+ .+. +-+
T Consensus 44 DSnDlEkERGITILaKnTav~~~~~~INIvDTPGH-ADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~ 122 (603)
T COG1217 44 DSNDLEKERGITILAKNTAVNYNGTRINIVDTPGH-ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLK 122 (603)
T ss_pred CccchhhhcCcEEEeccceeecCCeEEEEecCCCc-CCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCC
Confidence 33344888898865543 4666544458899999 888889999999999999999999988766555543 333 667
Q ss_pred EEEEEEccCCCCh---HhHHHHHHHHHhcC-------ceEEEecccccc
Q 021210 150 RILVLNREDMISM---ADRNAWATYFAKQG-------TKVIFSNGQLGM 188 (316)
Q Consensus 150 ~IlVlNK~DLv~~---~~~~~~~~~~~~~g-------~~vi~iSa~~g~ 188 (316)
.|+|+||+|..+. +.+++..+.|.+++ .++++-|++.|.
T Consensus 123 PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~ 171 (603)
T COG1217 123 PIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGT 171 (603)
T ss_pred cEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCce
Confidence 8999999998642 23455555565554 578899998774
No 367
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.98 E-value=1.2e-05 Score=69.64 Aligned_cols=55 Identities=22% Similarity=0.271 Sum_probs=35.3
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE-EEEEeC--C--cEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFG--K--DLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~-~~~~~~--~--~~~liDTPGi~ 273 (316)
++|+++|.+|||||||+|++.+... .....|.+..+. ..+... . .+.++||||..
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~-~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~ 60 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKF-PEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQE 60 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcC-CCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCch
Confidence 3799999999999999999997653 222222222221 122222 2 36799999953
No 368
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.97 E-value=4.3e-05 Score=65.21 Aligned_cols=101 Identities=15% Similarity=0.082 Sum_probs=59.9
Q ss_pred cccccchHHHHHHH-HHHHHhhcCeEEEEEeCCCCCCCCcH-HH----HHHh--CCCCEEEEEEccCCCChHhH--HHHH
Q 021210 100 VQWYPGHIAKTEKE-LKDQLKLMDVVIEVRDARIPLSTTHP-LM----DQWL--GNRKRILVLNREDMISMADR--NAWA 169 (316)
Q Consensus 100 i~~~Pgh~~~~~r~-l~~~i~~aDlIl~VvDar~~~~~~~~-~i----~~~l--~~k~~IlVlNK~DLv~~~~~--~~~~ 169 (316)
+-+.||+ .++.+. ....+.++|.+++|+|+.++.+..+. .+ .... .+.|+++|.||+|+....+. +...
T Consensus 55 i~Dt~G~-~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~ 133 (170)
T cd04115 55 LWDTAGQ-ERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQ 133 (170)
T ss_pred EEeCCCh-HHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHH
Confidence 4456777 444433 44567899999999999876433221 11 1111 25799999999998643321 1112
Q ss_pred HHHHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
+........++.+||+++.+...+.+.+..+.
T Consensus 134 ~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~ 165 (170)
T cd04115 134 RFADAHSMPLFETSAKDPSENDHVEAIFMTLA 165 (170)
T ss_pred HHHHHcCCcEEEEeccCCcCCCCHHHHHHHHH
Confidence 22233346788999999444444444444444
No 369
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=97.97 E-value=3e-05 Score=67.96 Aligned_cols=99 Identities=14% Similarity=0.002 Sum_probs=63.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH--HHH----HhCCCCEEEEEEccCCCChHh---------
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQ----WLGNRKRILVLNREDMISMAD--------- 164 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~--i~~----~l~~k~~IlVlNK~DLv~~~~--------- 164 (316)
+-+++|+ .++..........+|++|+|+|..++.+..+.. +.. ...+.|+++|.||+||.+...
T Consensus 55 i~Dt~G~-e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~ 133 (191)
T cd01875 55 LWDTAGQ-EEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQG 133 (191)
T ss_pred EEECCCc-hhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhcc
Confidence 3446777 555544445678999999999998765433221 111 123679999999999964321
Q ss_pred -----HHHHHHHHHhcC-ceEEEeccccccchhhhHHHHHH
Q 021210 165 -----RNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 165 -----~~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
.++-.++..+.+ ..++.+||++|.|++++.+.+.+
T Consensus 134 ~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~ 174 (191)
T cd01875 134 QAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVR 174 (191)
T ss_pred CCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHH
Confidence 011112223445 47889999999999988776554
No 370
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.97 E-value=1.8e-05 Score=68.93 Aligned_cols=98 Identities=12% Similarity=-0.070 Sum_probs=64.0
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----CCCCEEEEEEccCCCChH-----------
Q 021210 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMA----------- 163 (316)
Q Consensus 101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~l----~~k~~IlVlNK~DLv~~~----------- 163 (316)
-+++|+ .++.......+..+|.+|+|+|..+..+..+. .+...+ .+.|+++|.||+||.+..
T Consensus 54 ~Dt~G~-~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~ 132 (176)
T cd04133 54 WDTAGQ-EDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASP 132 (176)
T ss_pred EECCCC-ccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCC
Confidence 355666 44555455678999999999999876554332 111212 356899999999995431
Q ss_pred -hHHHHHHHHHhcCc-eEEEeccccccchhhhHHHHHH
Q 021210 164 -DRNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 164 -~~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
..++-.++.++.+. .++.+||++|.|++++.+.+.+
T Consensus 133 v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~ 170 (176)
T cd04133 133 ITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIK 170 (176)
T ss_pred CCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHH
Confidence 11222233334455 5889999999999988776554
No 371
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=97.97 E-value=1.5e-05 Score=81.91 Aligned_cols=80 Identities=21% Similarity=0.136 Sum_probs=55.5
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHH-HHh-CCCCEEEEEEccCCCChHhHHHHHHH-HHhcCceEEEeccccccchhhhHH
Q 021210 119 KLMDVVIEVRDARIPLSTTHPLMD-QWL-GNRKRILVLNREDMISMADRNAWATY-FAKQGTKVIFSNGQLGMGTMKLSR 195 (316)
Q Consensus 119 ~~aDlIl~VvDar~~~~~~~~~i~-~~l-~~k~~IlVlNK~DLv~~~~~~~~~~~-~~~~g~~vi~iSa~~g~gi~~L~~ 195 (316)
+.+|+++.|+|+.+.. ++..+. ... .++|+++|+||+|+.+........+. -+..|.+++++||++|.|++++.+
T Consensus 71 ~~aDvvI~VvDat~le--r~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~ 148 (591)
T TIGR00437 71 EKPDLVVNVVDASNLE--RNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKD 148 (591)
T ss_pred cCCCEEEEEecCCcch--hhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHH
Confidence 4799999999998632 222222 222 37899999999998654322211222 234578899999999999999988
Q ss_pred HHHHh
Q 021210 196 LAKAL 200 (316)
Q Consensus 196 ~L~~l 200 (316)
.+.+.
T Consensus 149 ~i~~~ 153 (591)
T TIGR00437 149 AIRKA 153 (591)
T ss_pred HHHHH
Confidence 87654
No 372
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.96 E-value=3.2e-05 Score=72.61 Aligned_cols=98 Identities=15% Similarity=0.139 Sum_probs=63.7
Q ss_pred cccccchHHHH------HHHHHHHHhhcCeEEEEEeCCCCCCCC---cH-----HHHH---HhCCCCEEEEEEccCCCCh
Q 021210 100 VQWYPGHIAKT------EKELKDQLKLMDVVIEVRDARIPLSTT---HP-----LMDQ---WLGNRKRILVLNREDMISM 162 (316)
Q Consensus 100 i~~~Pgh~~~~------~r~l~~~i~~aDlIl~VvDar~~~~~~---~~-----~i~~---~l~~k~~IlVlNK~DLv~~ 162 (316)
+++.||-+..+ --+..+.+++++.+++|+|...+.... .. +++. -+..+|.++|+||+|+.+.
T Consensus 248 VADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea 327 (366)
T KOG1489|consen 248 VADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA 327 (366)
T ss_pred eccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH
Confidence 67788754322 225667899999999999998763211 10 1111 1347899999999998532
Q ss_pred HhHHHHHHHH-HhcC-ceEEEeccccccchhhhHHHHHH
Q 021210 163 ADRNAWATYF-AKQG-TKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 163 ~~~~~~~~~~-~~~g-~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
++ ..++.+ +.+. ..++++||+.++|+..|++.+..
T Consensus 328 e~--~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 328 EK--NLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred HH--HHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence 22 222222 2222 45899999999999998877654
No 373
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.96 E-value=1.1e-05 Score=70.55 Aligned_cols=53 Identities=25% Similarity=0.242 Sum_probs=34.6
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeC-C--cEEEEeCCCcc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG-K--DLEFLDSPGII 273 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~-~--~~~liDTPGi~ 273 (316)
+|+++|.+|||||||+|++..... ....+.|+.+. ....++ . .+.|+||||..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 58 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF--VETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQE 58 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchHhhEEEEEEECCEEEEEEEEECCCch
Confidence 489999999999999999986542 22233443321 122232 2 36789999964
No 374
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=97.96 E-value=1.5e-05 Score=68.12 Aligned_cols=56 Identities=18% Similarity=0.174 Sum_probs=34.6
Q ss_pred EEeEeccCCCCcchhHHhhhcCcc-cccCCCCCceeeEEEEEeC---CcEEEEeCCCccc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFG---KDLEFLDSPGIIP 274 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~-~~vs~~pgtT~~~~~~~~~---~~~~liDTPGi~~ 274 (316)
||+++|.+|||||||+|+++.... ....+..+.......+... -.+.++||||...
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEK 61 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChh
Confidence 689999999999999999985432 1112222222221112221 2478999999753
No 375
>PLN03110 Rab GTPase; Provisional
Probab=97.96 E-value=1.5e-05 Score=71.37 Aligned_cols=56 Identities=14% Similarity=0.279 Sum_probs=38.1
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeCC---cEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~~---~~~liDTPGi~ 273 (316)
.+||+++|.+|||||||+++|.+... .....|.+..+ ...+.++. .+.|+||||-.
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~-~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~ 72 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEF-CLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcH
Confidence 47899999999999999999997653 22223332222 23333433 57899999964
No 376
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=97.96 E-value=1.2e-05 Score=71.83 Aligned_cols=54 Identities=24% Similarity=0.290 Sum_probs=36.5
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC----cEEEEeCCCc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK----DLEFLDSPGI 272 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~----~~~liDTPGi 272 (316)
+||+++|.+|||||||+|+|.+... .....|.++.+. ..+.++. .+.|+||||-
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~-~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~ 60 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGF-GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQ 60 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCc
Confidence 3689999999999999999987542 233334444343 2233322 4679999995
No 377
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.96 E-value=4e-05 Score=64.97 Aligned_cols=97 Identities=11% Similarity=0.028 Sum_probs=62.6
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-H-HH---HHhC-CCCEEEEEEccCCCChHhH--HHHHHHHH
Q 021210 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MD---QWLG-NRKRILVLNREDMISMADR--NAWATYFA 173 (316)
Q Consensus 102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~-i~---~~l~-~k~~IlVlNK~DLv~~~~~--~~~~~~~~ 173 (316)
+++|. .++..........+|++++|+|..+..+..+. . +. .... +.|+++|.||+||.....+ ++-....+
T Consensus 55 D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~ 133 (161)
T cd04117 55 DTAGQ-ERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAK 133 (161)
T ss_pred eCCCc-HhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHH
Confidence 45665 45655566778999999999998765332211 1 11 1111 4689999999999644321 12222233
Q ss_pred hcCceEEEeccccccchhhhHHHHHH
Q 021210 174 KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 174 ~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
..+..++.+||++|.|++++...|.+
T Consensus 134 ~~~~~~~e~Sa~~~~~v~~~f~~l~~ 159 (161)
T cd04117 134 EYGMDFFETSACTNSNIKESFTRLTE 159 (161)
T ss_pred HcCCEEEEEeCCCCCCHHHHHHHHHh
Confidence 34567899999999999988776543
No 378
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.95 E-value=7.6e-05 Score=69.90 Aligned_cols=93 Identities=23% Similarity=0.280 Sum_probs=67.0
Q ss_pred HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC---CCCEEEEEEccCCCChHh-----------------HHHHHHH
Q 021210 112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG---NRKRILVLNREDMISMAD-----------------RNAWATY 171 (316)
Q Consensus 112 r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~---~k~~IlVlNK~DLv~~~~-----------------~~~~~~~ 171 (316)
.+-+..+.+||+|+.|+|+.++-...++.+...+. +.|-++|+||+|...... ..+|.+.
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~ 226 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEK 226 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHH
Confidence 35567799999999999998765666776655543 678999999999765321 1234444
Q ss_pred HHhc----------C----ceEEEeccccccchhhhHHHHHHhhhhh
Q 021210 172 FAKQ----------G----TKVIFSNGQLGMGTMKLSRLAKALASDV 204 (316)
Q Consensus 172 ~~~~----------g----~~vi~iSa~~g~gi~~L~~~L~~l~~~~ 204 (316)
|... | .+++++||++|+|+++|+++|...++..
T Consensus 227 f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 227 FTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG 273 (379)
T ss_pred hccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence 4221 1 2589999999999999999987765443
No 379
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=97.95 E-value=1.4e-05 Score=67.21 Aligned_cols=56 Identities=25% Similarity=0.274 Sum_probs=34.8
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCce-eeE--EEEEe--C--CcEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT-RVL--KWVRF--G--KDLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT-~~~--~~~~~--~--~~~~liDTPGi~ 273 (316)
++|+++|.+|||||||+++|.............|+ -+. ..+.. + -.+.++||||..
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 63 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE 63 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH
Confidence 47999999999999999999854221222222222 121 12222 1 247899999964
No 380
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=97.95 E-value=1.3e-05 Score=68.68 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.3
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.+||+++|.+|||||||+|++.+..
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~ 28 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNK 28 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999998654
No 381
>PLN03127 Elongation factor Tu; Provisional
Probab=97.95 E-value=1.2e-05 Score=80.07 Aligned_cols=59 Identities=22% Similarity=0.351 Sum_probs=43.1
Q ss_pred cceEEeEeccCCCCcchhHHhhhcC------cccc---------cCCCCCceeeEEEEEe---CCcEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKR------RMCP---------AAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~------~~~~---------vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~ 274 (316)
..++|+++|..|+|||||+++|.+. .... ....+|+|++.....+ +..+.++||||...
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence 3678999999999999999999732 1111 1223799999765544 34689999999853
No 382
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=97.94 E-value=1.4e-05 Score=67.78 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=35.8
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (316)
+||+++|.+|||||||++++...... +..|.+..+...+.. ...+.++||||..
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~--~~~pt~g~~~~~~~~~~~~~~l~D~~G~~ 55 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVETVEYKNISFTVWDVGGQD 55 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--ccCCCCCcceEEEEECCEEEEEEECCCCH
Confidence 36999999999999999999654432 233322222222222 2357899999974
No 383
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.93 E-value=1.5e-05 Score=67.42 Aligned_cols=56 Identities=20% Similarity=0.329 Sum_probs=36.3
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeCC---cEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~~---~~~liDTPGi~ 273 (316)
..+++++|.+|||||||++++.+... .....+.++.+.. .+..+. .+.++||||..
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 67 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH
Confidence 36899999999999999999986542 2222233333321 223322 36789999974
No 384
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=97.93 E-value=1.5e-05 Score=69.31 Aligned_cols=55 Identities=20% Similarity=0.301 Sum_probs=36.3
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (316)
.++|+++|.+|||||||++++........ .|.+..+...+.. +-.+.++||||..
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~~--~~T~~~~~~~~~~~~~~~~l~D~~G~~ 72 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVTT--IPTIGFNVETVEYKNLKFTMWDVGGQD 72 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcccc--CCccccceEEEEECCEEEEEEECCCCH
Confidence 46899999999999999999975443222 2322222222222 3357899999974
No 385
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=97.93 E-value=5.9e-05 Score=75.03 Aligned_cols=95 Identities=20% Similarity=0.142 Sum_probs=61.2
Q ss_pred cccccchHH--H-----HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-CCCCEEEEEEccCCCChHhHHHHHHH
Q 021210 100 VQWYPGHIA--K-----TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-GNRKRILVLNREDMISMADRNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~--~-----~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l-~~k~~IlVlNK~DLv~~~~~~~~~~~ 171 (316)
+-++||... . ..+.....++++|++++|+|+..+.+..+..+.... .++|+++|+||+|+... +... +
T Consensus 255 l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piIlV~NK~Dl~~~-~~~~---~ 330 (442)
T TIGR00450 255 LLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVLNKIDLKIN-SLEF---F 330 (442)
T ss_pred EeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEEEEEECccCCCc-chhh---h
Confidence 566777621 1 123345678999999999999887655443222222 36899999999999754 2222 2
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHH
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
....+..++.+|+++ .|++++.+.+..
T Consensus 331 ~~~~~~~~~~vSak~-~gI~~~~~~L~~ 357 (442)
T TIGR00450 331 VSSKVLNSSNLSAKQ-LKIKALVDLLTQ 357 (442)
T ss_pred hhhcCCceEEEEEec-CCHHHHHHHHHH
Confidence 233455678899997 577776655444
No 386
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.92 E-value=3.8e-05 Score=66.76 Aligned_cols=98 Identities=12% Similarity=-0.008 Sum_probs=62.5
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHH----HHhCCCCEEEEEEccCCCCh------------
Q 021210 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD----QWLGNRKRILVLNREDMISM------------ 162 (316)
Q Consensus 101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~----~~l~~k~~IlVlNK~DLv~~------------ 162 (316)
-+++|+ .++..........+|++|+|+|..++.+..+. .+. +...+.|+++|.||+||.+.
T Consensus 54 wDt~G~-~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~ 132 (178)
T cd04131 54 WDTSGS-PYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQ 132 (178)
T ss_pred EECCCc-hhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCC
Confidence 345665 44544444567899999999999876544331 111 12236789999999998531
Q ss_pred --HhHHHHHHHHHhcCc-eEEEeccccccc-hhhhHHHHHH
Q 021210 163 --ADRNAWATYFAKQGT-KVIFSNGQLGMG-TMKLSRLAKA 199 (316)
Q Consensus 163 --~~~~~~~~~~~~~g~-~vi~iSa~~g~g-i~~L~~~L~~ 199 (316)
-..++-.++.++.+. .++.+||++|.| ++++...+..
T Consensus 133 ~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 133 APVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred CCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHH
Confidence 011222333445564 688999999995 9888765544
No 387
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.92 E-value=1.6e-05 Score=69.99 Aligned_cols=55 Identities=20% Similarity=0.336 Sum_probs=35.8
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeC--C--cEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG--K--DLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~--~--~~~liDTPGi~ 273 (316)
+||+++|.+|||||||+|++.+... .....|....+. ..+..+ . .+.++||||-.
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~-~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~ 61 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIF-SQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE 61 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCch
Confidence 3699999999999999999997542 112223222222 223333 2 36899999964
No 388
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.91 E-value=6.2e-06 Score=85.45 Aligned_cols=27 Identities=37% Similarity=0.369 Sum_probs=23.4
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMC 243 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~ 243 (316)
.++|+++|.+|+|||||+|+|+.....
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~ 50 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDSKM 50 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHhCC
Confidence 578999999999999999999975443
No 389
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.91 E-value=5.6e-05 Score=69.45 Aligned_cols=101 Identities=12% Similarity=-0.063 Sum_probs=63.5
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHH----------hCCCCEEEEEEccCCCChH-
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQW----------LGNRKRILVLNREDMISMA- 163 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~----------l~~k~~IlVlNK~DLv~~~- 163 (316)
+-+++|+ ..+...-...+..+|++|+|+|..+..+..+. ++... ..+.|+++|.||+|+....
T Consensus 52 I~Dt~G~-~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~ 130 (247)
T cd04143 52 ILDTSGN-HPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE 130 (247)
T ss_pred EEECCCC-hhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccc
Confidence 4456776 33333223357899999999998865432211 11111 1257999999999997422
Q ss_pred -hHHHHHHHHHh-cCceEEEeccccccchhhhHHHHHHhh
Q 021210 164 -DRNAWATYFAK-QGTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 164 -~~~~~~~~~~~-~g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
..++..+.+.. .+..++.+||++|.|++++.+.+..+.
T Consensus 131 v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 131 VQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred cCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 12223333322 245789999999999999988877654
No 390
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=97.91 E-value=4.7e-05 Score=64.79 Aligned_cols=98 Identities=11% Similarity=-0.043 Sum_probs=63.0
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh--CCCCEEEEEEccCCCChHh--HHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL--GNRKRILVLNREDMISMAD--RNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~ 170 (316)
+-++||+ .++.......+..+|.+++|+|..++.+... ..+.+.. .+.|++++.||+|+.+... .++..+
T Consensus 53 i~Dt~G~-~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~ 131 (168)
T cd04177 53 ILDTAGT-EQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVS 131 (168)
T ss_pred EEeCCCc-ccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHH
Confidence 4467887 4455555567889999999999876532211 1121211 2579999999999865332 112222
Q ss_pred HHHhcC-ceEEEeccccccchhhhHHHHH
Q 021210 171 YFAKQG-TKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 171 ~~~~~g-~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
..++.+ ..++.+||++|.|++++.+.+.
T Consensus 132 ~~~~~~~~~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 132 LSQQWGNVPFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred HHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence 223344 5789999999999988766543
No 391
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=97.90 E-value=2.1e-05 Score=67.87 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=37.2
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (316)
.++|+++|.+|||||||++++..... ....|.+..+...+.. ...+.++||||..
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~ 68 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGES--VTTIPTIGFNVETVTYKNISFTVWDVGGQD 68 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC--CCcCCccccceEEEEECCEEEEEEECCCCh
Confidence 46899999999999999999964432 2233433333332332 2357899999974
No 392
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=7.7e-05 Score=70.85 Aligned_cols=98 Identities=18% Similarity=0.234 Sum_probs=69.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCC---CCcHHHHHHhCCCCEEEEEEccCCCChHhHH----HHH---
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS---TTHPLMDQWLGNRKRILVLNREDMISMADRN----AWA--- 169 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~---~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~----~~~--- 169 (316)
..++||| ....|.+.....-.|+.++|+|+..+.- .++..| ..+.-+++++|+||+|+.++.+.. +..
T Consensus 74 lvDCPGH-asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLii-g~~~c~klvvvinkid~lpE~qr~ski~k~~kk~ 151 (522)
T KOG0461|consen 74 LVDCPGH-ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLII-GELLCKKLVVVINKIDVLPENQRASKIEKSAKKV 151 (522)
T ss_pred EEeCCCc-HHHHHHHHhhhheeeeeeEEEehhcccccccchhhhh-hhhhccceEEEEeccccccchhhhhHHHHHHHHH
Confidence 5689999 7788888888888999999999987653 333333 333357889999999998875422 222
Q ss_pred -HHHHhcC----ceEEEeccccc----cchhhhHHHHHH
Q 021210 170 -TYFAKQG----TKVIFSNGQLG----MGTMKLSRLAKA 199 (316)
Q Consensus 170 -~~~~~~g----~~vi~iSa~~g----~gi~~L~~~L~~ 199 (316)
+.+++.+ .+++.+|+..| +++.+|++.+.+
T Consensus 152 ~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s 190 (522)
T KOG0461|consen 152 RKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALES 190 (522)
T ss_pred HHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHH
Confidence 2233333 46899999999 777777777654
No 393
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=9.5e-06 Score=78.19 Aligned_cols=125 Identities=16% Similarity=0.186 Sum_probs=96.3
Q ss_pred CCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCC----------CCC
Q 021210 69 NSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP----------LST 136 (316)
Q Consensus 69 ~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~----------~~~ 136 (316)
++-+.|-...||+.+.|.++..-||.+..+. |-+.||| ..+-.+|...+++||+.++|+.||.+ .+.
T Consensus 128 lsW~ldtn~EeR~kgKtvEvGrA~FEte~~~ftiLDApGH-k~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTR 206 (501)
T KOG0459|consen 128 LSWALDTNGEERDKGKTVEVGRAYFETENKRFTILDAPGH-KSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTR 206 (501)
T ss_pred EEEEEcCchhhhhccceeeeeeEEEEecceeEEeeccCcc-cccchhhccccchhhhhhhhhhhhhchhhcccccccchh
Confidence 5566677777899999999999999998775 8899999 88999999999999999999999754 355
Q ss_pred CcHHHHHHhCCCCEEEEEEccCCCChH-------hH-HHHHHHHHhcC------ceEEEeccccccchhhhH
Q 021210 137 THPLMDQWLGNRKRILVLNREDMISMA-------DR-NAWATYFAKQG------TKVIFSNGQLGMGTMKLS 194 (316)
Q Consensus 137 ~~~~i~~~l~~k~~IlVlNK~DLv~~~-------~~-~~~~~~~~~~g------~~vi~iSa~~g~gi~~L~ 194 (316)
.|..+.+.++.++.|+++||||--..+ +. .+...+++.+| ..++++|...|.++++..
T Consensus 207 Eha~Lakt~gv~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 207 EHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred HHHHHHHhhccceEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 567777778889999999999964221 11 11222334344 357899999999887654
No 394
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.89 E-value=1.7e-05 Score=70.78 Aligned_cols=55 Identities=29% Similarity=0.457 Sum_probs=37.0
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEe--CC--cEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF--GK--DLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~--~~--~~~liDTPGi~ 273 (316)
.||+++|.+|||||||+|++.+....... .|.++.+.. .+.+ +. .+.++||||-.
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~-~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~ 63 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVS-DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC-CceeceEEEEEEEEECCCCEEEEEEEeCCcch
Confidence 57999999999999999999976543332 233333321 2222 22 47799999964
No 395
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.88 E-value=1.8e-05 Score=63.31 Aligned_cols=57 Identities=25% Similarity=0.311 Sum_probs=36.6
Q ss_pred EEeEeccCCCCcchhHHhhhcCccc---ccCCCCCceeeEEEEEeC---CcEEEEeCCCcccC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMC---PAAPRPGVTRVLKWVRFG---KDLEFLDSPGIIPM 275 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~---~vs~~pgtT~~~~~~~~~---~~~~liDTPGi~~~ 275 (316)
||+++|.+||||||||++|.+.... ......+.|......... ..+.+.|++|-...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~ 63 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEF 63 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCcccee
Confidence 5899999999999999999987654 122233444433332221 23678999998643
No 396
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=97.88 E-value=5.9e-05 Score=65.94 Aligned_cols=97 Identities=14% Similarity=0.043 Sum_probs=62.3
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHH----HHhCCCCEEEEEEccCCCCh-------------
Q 021210 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD----QWLGNRKRILVLNREDMISM------------- 162 (316)
Q Consensus 102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~----~~l~~k~~IlVlNK~DLv~~------------- 162 (316)
+++|. .++.......+..+|++|+|+|..++.+..+. .+. ....+.|+++|.||+||.+.
T Consensus 59 DtaG~-e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~ 137 (182)
T cd04172 59 DTSGS-PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQT 137 (182)
T ss_pred ECCCc-hhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCC
Confidence 34554 44544444568899999999998876443321 111 22235789999999998531
Q ss_pred -HhHHHHHHHHHhcCc-eEEEeccccccc-hhhhHHHHHH
Q 021210 163 -ADRNAWATYFAKQGT-KVIFSNGQLGMG-TMKLSRLAKA 199 (316)
Q Consensus 163 -~~~~~~~~~~~~~g~-~vi~iSa~~g~g-i~~L~~~L~~ 199 (316)
-..++-.++.++.+. .++.+||++|.| ++++...+..
T Consensus 138 ~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 138 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred CCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHH
Confidence 011223334445664 789999999998 9988765443
No 397
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.88 E-value=3.3e-05 Score=67.48 Aligned_cols=99 Identities=12% Similarity=0.029 Sum_probs=61.5
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH------HHHHHhCCCCEEEEEEccCCCChHhHH--------
Q 021210 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDMISMADRN-------- 166 (316)
Q Consensus 101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~------~i~~~l~~k~~IlVlNK~DLv~~~~~~-------- 166 (316)
-+++|+ .++..........+|++++|+|..++.+..+. .+.....+.|+++|.||+||....+..
T Consensus 53 ~Dt~G~-~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~ 131 (189)
T cd04134 53 WDTAGQ-EEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGK 131 (189)
T ss_pred EECCCC-hhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccC
Confidence 355666 33322223456889999999998776433221 111112367999999999997543211
Q ss_pred ------HHHHHHHhcC-ceEEEeccccccchhhhHHHHHHh
Q 021210 167 ------AWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 167 ------~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
+-.+...+.+ ..++.+||++|.|++++.+.+.+.
T Consensus 132 ~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~ 172 (189)
T cd04134 132 HTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARV 172 (189)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHH
Confidence 1112223334 568899999999999988766544
No 398
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.88 E-value=1.6e-05 Score=67.32 Aligned_cols=54 Identities=28% Similarity=0.421 Sum_probs=36.2
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeCC---cEEEEeCCCccc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~~---~~~liDTPGi~~ 274 (316)
+|+++|.+|||||||+++++.... .+..+.++.. ...+.++. .+.++||||...
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 59 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQ 59 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEECCEEEEEEEEECCCCcc
Confidence 489999999999999999986432 3334444422 12223332 367999999874
No 399
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.87 E-value=5.6e-05 Score=68.01 Aligned_cols=98 Identities=15% Similarity=-0.024 Sum_probs=61.2
Q ss_pred cccccchHHHHHHHHHHHHh-hcCeEEEEEeCCCCCCCCc-HHHHHHh------CCCCEEEEEEccCCCChHh--HHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLK-LMDVVIEVRDARIPLSTTH-PLMDQWL------GNRKRILVLNREDMISMAD--RNAWA 169 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~-~aDlIl~VvDar~~~~~~~-~~i~~~l------~~k~~IlVlNK~DLv~~~~--~~~~~ 169 (316)
+-++||.. ...+ ...+. .+|++++|+|+.++.+..+ ..+...+ .+.|+++|.||+|+....+ .++..
T Consensus 54 i~Dt~G~~-~~~~--~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~ 130 (221)
T cd04148 54 VIDHWEQE-MWTE--DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGR 130 (221)
T ss_pred EEeCCCcc-hHHH--hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHH
Confidence 44567763 1111 12344 8999999999987643221 1111111 2579999999999975432 11122
Q ss_pred HHHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
+.....+..++.+||++|.|++++.+.+...
T Consensus 131 ~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~ 161 (221)
T cd04148 131 ACAVVFDCKFIETSAGLQHNVDELLEGIVRQ 161 (221)
T ss_pred HHHHHcCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 2233446778999999999999988776543
No 400
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.87 E-value=2.2e-05 Score=66.89 Aligned_cols=53 Identities=25% Similarity=0.276 Sum_probs=33.8
Q ss_pred EeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE-EEEEeCC---cEEEEeCCCcc
Q 021210 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 220 i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~-~~~~~~~---~~~liDTPGi~ 273 (316)
|+++|.+|||||||+|++.+... .....|.+.... ..+.++. .+.++||||..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 57 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF-PEDYVPTVFENYSADVEVDGKPVELGLWDTAGQE 57 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC-CCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCc
Confidence 57999999999999999997653 222223221111 1222322 37899999964
No 401
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.87 E-value=2.2e-05 Score=67.45 Aligned_cols=54 Identities=24% Similarity=0.294 Sum_probs=35.8
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeC---CcEEEEeCCCcc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG---KDLEFLDSPGII 273 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~---~~~~liDTPGi~ 273 (316)
+|+++|.+|||||||+|++.+... .-...|.+..+.. .+..+ ..+.++||||..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-DKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQE 60 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChH
Confidence 589999999999999999997642 2222233323332 22222 257899999974
No 402
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.86 E-value=5.7e-05 Score=71.67 Aligned_cols=104 Identities=21% Similarity=0.275 Sum_probs=71.0
Q ss_pred cccccchHHHHH------HHHHHHHhhcCeEEEEEeCCCCCCCCcH---------HHHHH---hCCCCEEEEEEccCCC-
Q 021210 100 VQWYPGHIAKTE------KELKDQLKLMDVVIEVRDARIPLSTTHP---------LMDQW---LGNRKRILVLNREDMI- 160 (316)
Q Consensus 100 i~~~Pgh~~~~~------r~l~~~i~~aDlIl~VvDar~~~~~~~~---------~i~~~---l~~k~~IlVlNK~DLv- 160 (316)
+++.||-++.+. -+..+.++++-++++|+|...... +++ ++..+ |.+||.++|+||+|+.
T Consensus 211 ~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~-~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~ 289 (369)
T COG0536 211 VADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDG-RDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPL 289 (369)
T ss_pred EecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccC-CCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCc
Confidence 788887754333 246677999999999999863221 111 12222 3489999999999954
Q ss_pred ChHhHHHHHHHHHhc-CceE-EEeccccccchhhhHHHHHHhhhhh
Q 021210 161 SMADRNAWATYFAKQ-GTKV-IFSNGQLGMGTMKLSRLAKALASDV 204 (316)
Q Consensus 161 ~~~~~~~~~~~~~~~-g~~v-i~iSa~~g~gi~~L~~~L~~l~~~~ 204 (316)
+.++.++..+++.+. +... .++|+.+++|++.|...+.++....
T Consensus 290 ~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 290 DEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred CHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence 556666666666654 3332 3399999999999988877765543
No 403
>PLN03108 Rab family protein; Provisional
Probab=97.86 E-value=3.1e-05 Score=69.02 Aligned_cols=57 Identities=25% Similarity=0.355 Sum_probs=37.6
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccC-CCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs-~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (316)
.+||+++|.+|||||||+|+|.+....... +..|.+.....+.++. .+.++||||..
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~ 66 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 368999999999999999999976532221 1223333232333322 46799999964
No 404
>PRK00049 elongation factor Tu; Reviewed
Probab=97.85 E-value=1.9e-05 Score=77.46 Aligned_cols=58 Identities=22% Similarity=0.342 Sum_probs=42.7
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCc------ccc---------cCCCCCceeeEEEEEe---CCcEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRR------MCP---------AAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~------~~~---------vs~~pgtT~~~~~~~~---~~~~~liDTPGi~ 273 (316)
..++|+++|.+|+|||||+++|++.. ... -....|+|++...... +..+.++||||..
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~ 86 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA 86 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH
Confidence 45789999999999999999998631 001 1125789998765544 4468899999963
No 405
>PTZ00369 Ras-like protein; Provisional
Probab=97.85 E-value=3e-05 Score=67.64 Aligned_cols=56 Identities=21% Similarity=0.239 Sum_probs=35.6
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee-E-EEEEeCC---cEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-L-KWVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~-~-~~~~~~~---~~~liDTPGi~~ 274 (316)
.++|+++|.+|||||||++++.+.... .....|+.. . ..+.++. .+.++||||...
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 65 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFI--DEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEE 65 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC--cCcCCchhhEEEEEEEECCEEEEEEEEeCCCCcc
Confidence 468999999999999999999975432 112112111 1 1122322 366899999753
No 406
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.84 E-value=3.2e-05 Score=65.54 Aligned_cols=54 Identities=19% Similarity=0.303 Sum_probs=35.7
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (316)
+|+++|.+|||||||++++..... .....|....+. ..+..+. .+.++||||-.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 60 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEF-HSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 689999999999999999987653 222233333322 2233332 46799999964
No 407
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.83 E-value=2.1e-05 Score=80.81 Aligned_cols=54 Identities=28% Similarity=0.422 Sum_probs=40.2
Q ss_pred EEeEeccCCCCcchhHHhhhcCcc--cccCCCCCceeeEEEEEe---CCcEEEEeCCCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVLKWVRF---GKDLEFLDSPGI 272 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~--~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi 272 (316)
.|+++|.+|+|||||+|+|.+... ......+|+|.+.....+ +..+.++||||.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh 60 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH 60 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH
Confidence 589999999999999999997542 222335788988654333 346789999995
No 408
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.83 E-value=2.5e-05 Score=70.33 Aligned_cols=55 Identities=25% Similarity=0.227 Sum_probs=34.7
Q ss_pred EEeEeccCCCCcchhHHhhhcCccc-ccCCCCC-ceeeEEEEEe---CCcEEEEeCCCcc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPG-VTRVLKWVRF---GKDLEFLDSPGII 273 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~-~vs~~pg-tT~~~~~~~~---~~~~~liDTPGi~ 273 (316)
||+++|.+|||||||+|++...... .....++ .......+.+ ...+.++||||..
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~ 61 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE 61 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc
Confidence 6999999999999999999755432 1111111 1111222232 2347899999986
No 409
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.83 E-value=3.7e-05 Score=65.47 Aligned_cols=53 Identities=21% Similarity=0.198 Sum_probs=34.2
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeC-C--cEEEEeCCCcc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFG-K--DLEFLDSPGII 273 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~-~--~~~liDTPGi~ 273 (316)
||+++|.+|||||||++++.+.... .....|+.+ ...+.++ . .+.++||||..
T Consensus 3 ki~iiG~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFSKDQFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQE 60 (175)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccccceEEEEEECCEEEEEEEEeCCCch
Confidence 6999999999999999999975422 112112211 1122232 2 46799999964
No 410
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.82 E-value=2.5e-05 Score=68.68 Aligned_cols=54 Identities=28% Similarity=0.390 Sum_probs=36.1
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCccc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~ 274 (316)
||+++|.+|||||||+|++++.... ..+..|+.+. ..+.++. .+.++||||...
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~ 59 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYS 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCEEEEEEEEECCCchh
Confidence 4899999999999999999876532 2233333322 1233322 578999999753
No 411
>PRK12736 elongation factor Tu; Reviewed
Probab=97.81 E-value=2.4e-05 Score=76.62 Aligned_cols=58 Identities=22% Similarity=0.348 Sum_probs=42.6
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCc------ccc---------cCCCCCceeeEEEEEe---CCcEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRR------MCP---------AAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~------~~~---------vs~~pgtT~~~~~~~~---~~~~~liDTPGi~ 273 (316)
..++|+++|.+++|||||+++|++.. ... -....|+|.+...... +..+.++||||..
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH
Confidence 46889999999999999999998631 111 1115689998765444 3468899999953
No 412
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.80 E-value=1.8e-05 Score=73.29 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.7
Q ss_pred EEeEeccCCCCcchhHHhhhcC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKR 240 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~ 240 (316)
+|+++|.+|+|||||+|+|+..
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~ 22 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYA 22 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 3799999999999999999853
No 413
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.80 E-value=2.6e-05 Score=81.61 Aligned_cols=58 Identities=21% Similarity=0.291 Sum_probs=41.0
Q ss_pred eEEeEeccCCCCcchhHHhhhcCccc-----ccCC------------CCCceeeEEEE---EeCCcEEEEeCCCcccC
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMC-----PAAP------------RPGVTRVLKWV---RFGKDLEFLDSPGIIPM 275 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~-----~vs~------------~pgtT~~~~~~---~~~~~~~liDTPGi~~~ 275 (316)
.+|+++|.+|+|||||+|+|+..... .+.+ ..|+|.+.... +.+..+.++||||....
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 37999999999999999999743221 1211 35788775332 22557899999999753
No 414
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.80 E-value=0.00025 Score=65.55 Aligned_cols=115 Identities=15% Similarity=0.040 Sum_probs=70.9
Q ss_pred hhhhhccccCCcceEEEecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEE
Q 021210 77 YEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRIL 152 (316)
Q Consensus 77 ~~e~e~~~~~d~~~~~~~~~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~Il 152 (316)
..|++.+.++......+.-.-. .+-++||| .++...+...+..+|.+++|+|+..+.......+.+.+ .+.|.++
T Consensus 43 ~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~-~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~ii 121 (268)
T cd04170 43 PEEIKRKMSISTSVAPLEWKGHKINLIDTPGY-ADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRII 121 (268)
T ss_pred HHHHhhcccccceeEEEEECCEEEEEEECcCH-HHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEE
Confidence 3455666666665544432222 36789999 56777888899999999999999887654433333333 2679999
Q ss_pred EEEccCCCChHhHHHHHHHHHh-cCceEEE--eccccccchhhh
Q 021210 153 VLNREDMISMADRNAWATYFAK-QGTKVIF--SNGQLGMGTMKL 193 (316)
Q Consensus 153 VlNK~DLv~~~~~~~~~~~~~~-~g~~vi~--iSa~~g~gi~~L 193 (316)
++||+|+.... ..+..+.+++ .+..+++ +....|.++..+
T Consensus 122 vvNK~D~~~~~-~~~~~~~l~~~~~~~~~~~~ip~~~~~~~~~~ 164 (268)
T cd04170 122 FINKMDRERAD-FDKTLAALQEAFGRPVVPLQLPIGEGDDFKGV 164 (268)
T ss_pred EEECCccCCCC-HHHHHHHHHHHhCCCeEEEEecccCCCceeEE
Confidence 99999987542 2222333332 3434443 334555554443
No 415
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.79 E-value=0.00013 Score=74.15 Aligned_cols=88 Identities=13% Similarity=0.022 Sum_probs=63.6
Q ss_pred cchhhhhhccccCCcceEEEecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCC
Q 021210 74 IEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK 149 (316)
Q Consensus 74 ~g~~~e~e~~~~~d~~~~~~~~~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~ 149 (316)
|-...|++.++++......|..... .+-++||| .++...+...+..+|.+|+|+|+..+.......+.+.. .+.|
T Consensus 55 D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~-~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iP 133 (526)
T PRK00741 55 DWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH-EDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTP 133 (526)
T ss_pred CCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc-hhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCC
Confidence 3345577778887777665554333 36789999 66778888899999999999999887644333343333 3789
Q ss_pred EEEEEEccCCCCh
Q 021210 150 RILVLNREDMISM 162 (316)
Q Consensus 150 ~IlVlNK~DLv~~ 162 (316)
+++++||+|+...
T Consensus 134 iiv~iNK~D~~~a 146 (526)
T PRK00741 134 IFTFINKLDRDGR 146 (526)
T ss_pred EEEEEECCccccc
Confidence 9999999998643
No 416
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.79 E-value=2.1e-05 Score=71.85 Aligned_cols=56 Identities=21% Similarity=0.337 Sum_probs=36.2
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccc-----cCC------------CCCceeeEEEEE---eCCcEEEEeCCCccc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCP-----AAP------------RPGVTRVLKWVR---FGKDLEFLDSPGIIP 274 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~-----vs~------------~pgtT~~~~~~~---~~~~~~liDTPGi~~ 274 (316)
+|+++|.+|+|||||+|+|+...... +.. .-|+|.+..... .+.++.++||||...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~ 76 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMD 76 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccc
Confidence 37999999999999999998642211 111 123343332222 245789999999864
No 417
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.79 E-value=5.1e-05 Score=68.19 Aligned_cols=59 Identities=20% Similarity=0.166 Sum_probs=39.2
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcc-cccCCCCCceeeEEEEEeC---CcEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFG---KDLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~-~~vs~~pgtT~~~~~~~~~---~~~~liDTPGi~~ 274 (316)
..+||+++|.+|||||||++++..... ....+..|++.....+..+ -.+.++||||...
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 74 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchh
Confidence 457899999999999999999875432 2233344444433223222 2578999999753
No 418
>PLN00223 ADP-ribosylation factor; Provisional
Probab=97.79 E-value=4.1e-05 Score=66.62 Aligned_cols=54 Identities=19% Similarity=0.312 Sum_probs=36.4
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGI 272 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi 272 (316)
.++|+++|.+|||||||++++....... ..|.+..+...+.. +-.+.++||||-
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~--~~pt~g~~~~~~~~~~~~~~i~D~~Gq 71 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNVETVEYKNISFTVWDVGGQ 71 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCcc--ccCCcceeEEEEEECCEEEEEEECCCC
Confidence 3689999999999999999998644322 22322222222332 335889999995
No 419
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.78 E-value=3.4e-05 Score=75.56 Aligned_cols=58 Identities=21% Similarity=0.343 Sum_probs=42.4
Q ss_pred cceEEeEeccCCCCcchhHHhhhcC------cccc---------cCCCCCceeeEEEEEe---CCcEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKR------RMCP---------AAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~------~~~~---------vs~~pgtT~~~~~~~~---~~~~~liDTPGi~ 273 (316)
..++|+++|..|+|||||+++|++. .... -....|+|.+.....+ +..+.|+||||..
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence 3578999999999999999999842 1111 1123799999765555 3458899999974
No 420
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=97.78 E-value=3.6e-05 Score=65.88 Aligned_cols=54 Identities=22% Similarity=0.136 Sum_probs=36.7
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeCC---cEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~~---~~~liDTPGi~ 273 (316)
+|++++|.+|+|||||++++.+.. .....+.|+.+.. .+.++. .+.++||||..
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 59 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNG--YPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQD 59 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCceeeeeeEEEEECCEEEEEEEEECCCCh
Confidence 468999999999999999998654 2333444544421 122322 46789999974
No 421
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=97.77 E-value=4.2e-05 Score=67.80 Aligned_cols=56 Identities=23% Similarity=0.337 Sum_probs=37.2
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee-EEEEEeCC----cEEEEeCCCccc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LKWVRFGK----DLEFLDSPGIIP 274 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~-~~~~~~~~----~~~liDTPGi~~ 274 (316)
.+|+++|.+|||||||+|+|.+........ |..+.. ........ .+.++||+|...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~ 66 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYP-PTIGNLDPAKTIEPYRRNIKLQLWDTAGQEE 66 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCC-CceeeeeEEEEEEeCCCEEEEEeecCCCHHH
Confidence 689999999999999999999765433222 222222 22222222 378999999864
No 422
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.76 E-value=4.1e-05 Score=68.08 Aligned_cols=54 Identities=19% Similarity=0.331 Sum_probs=36.6
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-----CCcEEEEeCCCccc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-----GKDLEFLDSPGIIP 274 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-----~~~~~liDTPGi~~ 274 (316)
+|+++|.+|+|||||++.|....... ..+.++.....+.. +..+.|+||||-..
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~--t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~ 60 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRS--TVTSIEPNVATFILNSEGKGKKFRLVDVPGHPK 60 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCC--ccCcEeecceEEEeecCCCCceEEEEECCCCHH
Confidence 48999999999999999999764322 22223333222222 34689999999764
No 423
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.76 E-value=2.7e-05 Score=79.97 Aligned_cols=35 Identities=20% Similarity=0.404 Sum_probs=26.5
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCC-ceee
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-VTRV 254 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pg-tT~~ 254 (316)
.-|+++|.+|+|||||+|+|.+... +...|| +|++
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v--~~~e~ggiTq~ 40 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAV--AKREAGGITQH 40 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccc--ccccCCceecc
Confidence 3599999999999999999998753 233344 6654
No 424
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.76 E-value=5.7e-05 Score=65.01 Aligned_cols=54 Identities=20% Similarity=0.266 Sum_probs=35.0
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee-EE-EEEeCC---cEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LK-WVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~-~~-~~~~~~---~~~liDTPGi~ 273 (316)
++|+++|.+|||||||++++...... .....|+.+ .. .+.++. .+.|+||||..
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 61 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFP--DYHDPTIEDAYKQQARIDNEPALLDILDTAGQA 61 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC--CCcCCcccceEEEEEEECCEEEEEEEEeCCCch
Confidence 57999999999999999999865432 111122221 11 222322 36799999964
No 425
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=97.76 E-value=0.00016 Score=65.76 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=36.8
Q ss_pred CCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 148 RKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 148 k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
.|.++|+||+|+++.++...+. + ...++++||++|.|+++|.+.+.+.
T Consensus 177 ~p~iiV~NK~Dl~~~~~~~~~~----~-~~~~~~~SA~~g~gi~~l~~~i~~~ 224 (233)
T cd01896 177 IPCLYVYNKIDLISIEELDLLA----R-QPNSVVISAEKGLNLDELKERIWDK 224 (233)
T ss_pred eeEEEEEECccCCCHHHHHHHh----c-CCCEEEEcCCCCCCHHHHHHHHHHH
Confidence 3889999999998877655332 2 2458899999999999988876553
No 426
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=97.76 E-value=3.7e-05 Score=69.48 Aligned_cols=55 Identities=24% Similarity=0.384 Sum_probs=35.8
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCccc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP 274 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~~ 274 (316)
++|+++|.+|||||||++++....... ..|-+..+...... .-.+.|+||||-..
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~--~~~Tig~~~~~~~~~~~~l~iwDt~G~e~ 56 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD--TVSTVGGAFYLKQWGPYNISIWDTAGREQ 56 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC--CCCccceEEEEEEeeEEEEEEEeCCCccc
Confidence 368999999999999999999766422 22211112211111 22578999999753
No 427
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.74 E-value=2.8e-05 Score=81.53 Aligned_cols=58 Identities=26% Similarity=0.477 Sum_probs=43.0
Q ss_pred ccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEE--e-----CCcEEEEeCCCcc
Q 021210 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-----GKDLEFLDSPGII 273 (316)
Q Consensus 215 ~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~--~-----~~~~~liDTPGi~ 273 (316)
.++..|+++|.+|+|||||+++|.+... ..+..+|+|.+...+. . +..+.|+||||..
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~-~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe 306 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQI-AQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE 306 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccC-ccccCCccccccceEEEEEEecCCceEEEEEECCcHH
Confidence 4567899999999999999999987653 3455577887643222 1 2468999999974
No 428
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=97.74 E-value=8.8e-05 Score=65.58 Aligned_cols=82 Identities=15% Similarity=-0.039 Sum_probs=55.9
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcH--HHHHH----hCCCCEEEEEEccCCCCh-------------------H--hHHHHH
Q 021210 117 QLKLMDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMISM-------------------A--DRNAWA 169 (316)
Q Consensus 117 ~i~~aDlIl~VvDar~~~~~~~~--~i~~~----l~~k~~IlVlNK~DLv~~-------------------~--~~~~~~ 169 (316)
....+|++|+|+|..+..+..+. .+... ..+.|+++|.||+||.+. . ..++..
T Consensus 84 ~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~ 163 (195)
T cd01873 84 AYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGR 163 (195)
T ss_pred cCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHH
Confidence 57899999999999876543322 12121 235689999999998631 0 112233
Q ss_pred HHHHhcCceEEEeccccccchhhhHHHHH
Q 021210 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
+..++.|..++.+||++|.|++++.+.+.
T Consensus 164 ~~a~~~~~~~~E~SAkt~~~V~e~F~~~~ 192 (195)
T cd01873 164 AVAKELGIPYYETSVVTQFGVKDVFDNAI 192 (195)
T ss_pred HHHHHhCCEEEEcCCCCCCCHHHHHHHHH
Confidence 34455677889999999999998876554
No 429
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.74 E-value=2.6e-05 Score=65.70 Aligned_cols=45 Identities=24% Similarity=0.408 Sum_probs=32.0
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEEEeCCCcc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 273 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~ 273 (316)
||++||.+++|||||+++|.+... ...-|..+.. .. .+|||||=.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~-----~~~KTq~i~~---~~--~~IDTPGEy 47 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI-----RYKKTQAIEY---YD--NTIDTPGEY 47 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC-----CcCccceeEe---cc--cEEECChhh
Confidence 589999999999999999998652 1223433332 22 359999964
No 430
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.73 E-value=0.00023 Score=64.39 Aligned_cols=84 Identities=21% Similarity=0.228 Sum_probs=56.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCE-EEEEEccCCCChHh-HHHHHHH----
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKR-ILVLNREDMISMAD-RNAWATY---- 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~-IlVlNK~DLv~~~~-~~~~~~~---- 171 (316)
+-++||+. ..+.+.++.+|++++|+|+..+....+..+...+. +.|. ++|+||+|+++..+ .++..+.
T Consensus 87 ~vDtPg~~----~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~ 162 (225)
T cd01882 87 FIECPNDI----NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHR 162 (225)
T ss_pred EEeCCchH----HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHH
Confidence 44778874 55667789999999999999877766666666553 4565 45999999984322 2222222
Q ss_pred HH-h--cCceEEEeccccc
Q 021210 172 FA-K--QGTKVIFSNGQLG 187 (316)
Q Consensus 172 ~~-~--~g~~vi~iSa~~g 187 (316)
+. + .+.+++++||++.
T Consensus 163 ~~~~~~~~~ki~~iSa~~~ 181 (225)
T cd01882 163 FWTEVYQGAKLFYLSGIVH 181 (225)
T ss_pred HHHhhCCCCcEEEEeeccC
Confidence 22 1 1357899998865
No 431
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.72 E-value=0.00015 Score=76.43 Aligned_cols=90 Identities=18% Similarity=0.096 Sum_probs=67.7
Q ss_pred CCCCcchhhhhhccccCCcceE--EEec--ccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHH
Q 021210 70 SNGSIEAYEEECDWADLDADLY--YWTK--SLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ 143 (316)
Q Consensus 70 ~~~~~g~~~e~e~~~~~d~~~~--~~~~--~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~ 143 (316)
+.+.|-...|++.+++++.... .|.. ... .+-++||| .++..++...+..+|.+|+|+|+..+.......+.+
T Consensus 55 ~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~-~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~ 133 (731)
T PRK07560 55 QLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH-VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR 133 (731)
T ss_pred ceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc-cChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHH
Confidence 4467777889999999998765 4421 111 26789999 557888999999999999999999887665544444
Q ss_pred H-h-CCCCEEEEEEccCCC
Q 021210 144 W-L-GNRKRILVLNREDMI 160 (316)
Q Consensus 144 ~-l-~~k~~IlVlNK~DLv 160 (316)
. . .+.|.|+++||+|+.
T Consensus 134 ~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 134 QALRERVKPVLFINKVDRL 152 (731)
T ss_pred HHHHcCCCeEEEEECchhh
Confidence 3 2 256889999999986
No 432
>PRK00007 elongation factor G; Reviewed
Probab=97.72 E-value=3.4e-05 Score=80.88 Aligned_cols=57 Identities=19% Similarity=0.269 Sum_probs=41.0
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcc-----cccC------------CCCCceeeEEE---EEeCCcEEEEeCCCccc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRM-----CPAA------------PRPGVTRVLKW---VRFGKDLEFLDSPGIIP 274 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~-----~~vs------------~~pgtT~~~~~---~~~~~~~~liDTPGi~~ 274 (316)
.+|+++|.+|+|||||+|+|+.... ..++ ...|+|++... .+.+..+.|+||||...
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 4799999999999999999973211 1122 25688887533 23366799999999864
No 433
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.70 E-value=5.8e-05 Score=70.17 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.0
Q ss_pred EEeEeccCCCCcchhHHhhhcC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKR 240 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~ 240 (316)
+|+++|.+|+|||||+|+|+..
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~ 25 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLF 25 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 5899999999999999999853
No 434
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.69 E-value=3.1e-05 Score=62.26 Aligned_cols=51 Identities=31% Similarity=0.382 Sum_probs=32.5
Q ss_pred EeccCCCCcchhHHhhhcCcccccCCCCCce-eeEEEE--Ee---CCcEEEEeCCCccc
Q 021210 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVT-RVLKWV--RF---GKDLEFLDSPGIIP 274 (316)
Q Consensus 222 ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT-~~~~~~--~~---~~~~~liDTPGi~~ 274 (316)
++|.+|+|||||+|+|.+..... .. ..+| .+.... .. ...+.++||||...
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~-~~-~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 57 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP-EE-YETTIIDFYSKTIEVDGKKVKLQIWDTAGQER 57 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC-cc-cccchhheeeEEEEECCEEEEEEEEecCChHH
Confidence 58999999999999999766421 11 1122 222111 11 33578999999764
No 435
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.69 E-value=8e-05 Score=65.00 Aligned_cols=54 Identities=20% Similarity=0.253 Sum_probs=34.4
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE-EEEEeC---CcEEEEeCCCcc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFG---KDLEFLDSPGII 273 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~-~~~~~~---~~~~liDTPGi~ 273 (316)
+|+++|.+|||||||++++.+..... ...|...... ..+..+ ..+.|+||||-.
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~ 59 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQ-VYEPTVFENYVHDIFVDGLHIELSLWDTAGQE 59 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-ccCCcceeeeEEEEEECCEEEEEEEEECCCCh
Confidence 68999999999999999998765322 1112211111 122222 247899999974
No 436
>PLN03126 Elongation factor Tu; Provisional
Probab=97.69 E-value=5.5e-05 Score=75.88 Aligned_cols=58 Identities=24% Similarity=0.369 Sum_probs=41.9
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCccc---------------ccCCCCCceeeEEEEEe---CCcEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC---------------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~---------------~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~ 273 (316)
..++++++|.+|+|||||+++|+..... .-....|+|.+.....+ +..+.|+||||..
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~ 155 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA 155 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHH
Confidence 4678999999999999999999953211 11223588887644333 4578999999963
No 437
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=97.68 E-value=3e-05 Score=67.18 Aligned_cols=83 Identities=16% Similarity=0.182 Sum_probs=55.1
Q ss_pred HHHhhcCeEEEEEeCCCCCC--CCcHHHHHHhC-----CCCEEEEEEccCCCChHhHHHHHHHHH--h----cCceEEEe
Q 021210 116 DQLKLMDVVIEVRDARIPLS--TTHPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFA--K----QGTKVIFS 182 (316)
Q Consensus 116 ~~i~~aDlIl~VvDar~~~~--~~~~~i~~~l~-----~k~~IlVlNK~DLv~~~~~~~~~~~~~--~----~g~~vi~i 182 (316)
.....+|.+|+|+|+.+... .....+..++. +.|+++++||.|+.+....++..+.+. + ....++.+
T Consensus 77 ~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~ 156 (175)
T PF00025_consen 77 SYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSC 156 (175)
T ss_dssp GGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEE
T ss_pred eeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEee
Confidence 45788999999999986431 11223344433 579999999999865433333333331 1 22568889
Q ss_pred ccccccchhhhHHHHH
Q 021210 183 NGQLGMGTMKLSRLAK 198 (316)
Q Consensus 183 Sa~~g~gi~~L~~~L~ 198 (316)
|+.+|+|+.+..+.|.
T Consensus 157 sa~~g~Gv~e~l~WL~ 172 (175)
T PF00025_consen 157 SAKTGEGVDEGLEWLI 172 (175)
T ss_dssp BTTTTBTHHHHHHHHH
T ss_pred eccCCcCHHHHHHHHH
Confidence 9999999888776654
No 438
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.68 E-value=9.5e-05 Score=63.86 Aligned_cols=55 Identities=20% Similarity=0.258 Sum_probs=36.0
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee-EE-EEEeCC---cEEEEeCCCccc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LK-WVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~-~~-~~~~~~---~~~liDTPGi~~ 274 (316)
+||+++|.+|||||||++++..... ......|+.+ .. .+..+. .+.|+||+|-..
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 61 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccc
Confidence 5799999999999999999986542 1222223322 21 222332 467999999753
No 439
>PRK12739 elongation factor G; Reviewed
Probab=97.67 E-value=3.9e-05 Score=80.34 Aligned_cols=58 Identities=21% Similarity=0.346 Sum_probs=41.2
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCc-----ccccC------------CCCCceeeEEEE---EeCCcEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRR-----MCPAA------------PRPGVTRVLKWV---RFGKDLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~-----~~~vs------------~~pgtT~~~~~~---~~~~~~~liDTPGi~~ 274 (316)
..+|+++|.+|+|||||+|+|+... ...+. ...|+|.+.... +.+..+.++||||...
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 3479999999999999999997421 11122 246888875432 2255789999999864
No 440
>PTZ00416 elongation factor 2; Provisional
Probab=97.67 E-value=0.0001 Score=78.78 Aligned_cols=89 Identities=15% Similarity=0.117 Sum_probs=69.3
Q ss_pred CCCcchhhhhhccccCCcce--EEEecc--------cc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc
Q 021210 71 NGSIEAYEEECDWADLDADL--YYWTKS--------LR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH 138 (316)
Q Consensus 71 ~~~~g~~~e~e~~~~~d~~~--~~~~~~--------~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~ 138 (316)
.++|-...|++.+++++... ..|... -. .+.++||| .++..++...+..+|.+|+|+|+..++....
T Consensus 55 ~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~-~~f~~~~~~al~~~D~ailVvda~~g~~~~t 133 (836)
T PTZ00416 55 RFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDSPGH-VDFSSEVTAALRVTDGALVVVDCVEGVCVQT 133 (836)
T ss_pred eecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcCCCH-HhHHHHHHHHHhcCCeEEEEEECCCCcCccH
Confidence 35677778999999998653 456522 11 26789999 6688889999999999999999999887666
Q ss_pred HHHHHHhC--CCCEEEEEEccCCC
Q 021210 139 PLMDQWLG--NRKRILVLNREDMI 160 (316)
Q Consensus 139 ~~i~~~l~--~k~~IlVlNK~DLv 160 (316)
..+.+.+. ++|+++++||+|+.
T Consensus 134 ~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 134 ETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred HHHHHHHHHcCCCEEEEEEChhhh
Confidence 55555543 67999999999987
No 441
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.00056 Score=60.24 Aligned_cols=102 Identities=14% Similarity=0.082 Sum_probs=71.1
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhC-----CCCEEEEEEccCCCChHhHH--HHHHHH
Q 021210 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNREDMISMADRN--AWATYF 172 (316)
Q Consensus 102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l~-----~k~~IlVlNK~DLv~~~~~~--~~~~~~ 172 (316)
|.-...+++.--+...+.+++++|.|.|..+-.+..+ ..|..... ..-+++|.||.||+++.+.. +-....
T Consensus 76 WDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kA 155 (221)
T KOG0094|consen 76 WDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKA 155 (221)
T ss_pred EecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHH
Confidence 3333348888888899999999999999987655433 22333332 12457899999999886522 222334
Q ss_pred HhcCceEEEeccccccchhhhHHHHHHhhhh
Q 021210 173 AKQGTKVIFSNGQLGMGTMKLSRLAKALASD 203 (316)
Q Consensus 173 ~~~g~~vi~iSa~~g~gi~~L~~~L~~l~~~ 203 (316)
++++..++.+||+.|.|+++|.+.+.....+
T Consensus 156 kel~a~f~etsak~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 156 KELNAEFIETSAKAGENVKQLFRRIAAALPG 186 (221)
T ss_pred HHhCcEEEEecccCCCCHHHHHHHHHHhccC
Confidence 5567788999999999999888776655443
No 442
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.66 E-value=6.7e-05 Score=63.97 Aligned_cols=54 Identities=20% Similarity=0.189 Sum_probs=34.2
Q ss_pred EeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCccc
Q 021210 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP 274 (316)
Q Consensus 220 i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~~ 274 (316)
|+++|.+|||||||++++.+... .....|-+..+...+.. +..+.++||||-..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~-~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~ 56 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERS-LESVVPTTGFNSVAIPTQDAIMELLEIGGSQN 56 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC-cccccccCCcceEEEeeCCeEEEEEECCCCcc
Confidence 78999999999999999997642 11112211112212222 33578999999753
No 443
>PRK13351 elongation factor G; Reviewed
Probab=97.65 E-value=0.0004 Score=72.76 Aligned_cols=90 Identities=14% Similarity=0.103 Sum_probs=65.7
Q ss_pred CCcchhhhhhccccCCcceEEEecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--C
Q 021210 72 GSIEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N 147 (316)
Q Consensus 72 ~~~g~~~e~e~~~~~d~~~~~~~~~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~ 147 (316)
+.|-...|++.+++++.....+.-... .+-++||| .++...+...+..+|.+++|+|+..+.......+...+. +
T Consensus 47 ~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~-~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~ 125 (687)
T PRK13351 47 VTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGH-IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYG 125 (687)
T ss_pred cCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCc-HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 345555678888888876664433333 36688999 567788889999999999999998876544444433332 6
Q ss_pred CCEEEEEEccCCCCh
Q 021210 148 RKRILVLNREDMISM 162 (316)
Q Consensus 148 k~~IlVlNK~DLv~~ 162 (316)
.|+++++||+|+...
T Consensus 126 ~p~iiviNK~D~~~~ 140 (687)
T PRK13351 126 IPRLIFINKMDRVGA 140 (687)
T ss_pred CCEEEEEECCCCCCC
Confidence 899999999998754
No 444
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.64 E-value=0.00023 Score=72.32 Aligned_cols=88 Identities=15% Similarity=0.029 Sum_probs=64.1
Q ss_pred CcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCC
Q 021210 73 SIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNR 148 (316)
Q Consensus 73 ~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k 148 (316)
.|-...|++.++++......|...... +-++||| ..+...+...+..+|.+|+|+|+..+.......+.+.. .+.
T Consensus 55 ~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~-~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~ 133 (527)
T TIGR00503 55 SDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGH-EDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDT 133 (527)
T ss_pred CCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCCh-hhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 344456777888887776655543333 6689999 67888888999999999999999876544333343333 368
Q ss_pred CEEEEEEccCCCC
Q 021210 149 KRILVLNREDMIS 161 (316)
Q Consensus 149 ~~IlVlNK~DLv~ 161 (316)
|+++++||+|+..
T Consensus 134 PiivviNKiD~~~ 146 (527)
T TIGR00503 134 PIFTFMNKLDRDI 146 (527)
T ss_pred CEEEEEECccccC
Confidence 9999999999863
No 445
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00018 Score=74.95 Aligned_cols=92 Identities=17% Similarity=0.167 Sum_probs=75.4
Q ss_pred CCCCcchhhhhhccccCCcceE--EEec-cccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC
Q 021210 70 SNGSIEAYEEECDWADLDADLY--YWTK-SLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG 146 (316)
Q Consensus 70 ~~~~~g~~~e~e~~~~~d~~~~--~~~~-~~~~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~ 146 (316)
+-++|-.-.|++.++|+..+.. +|.. ..=.+.++||| ..+..++...+.-+|.++.|+|+..+....-..+.+...
T Consensus 47 ~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH-VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~ 125 (697)
T COG0480 47 AATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH-VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD 125 (697)
T ss_pred CccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc-cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh
Confidence 5567777889999999988877 5553 33348899999 889999999999999999999999988776666655544
Q ss_pred --CCCEEEEEEccCCCCh
Q 021210 147 --NRKRILVLNREDMISM 162 (316)
Q Consensus 147 --~k~~IlVlNK~DLv~~ 162 (316)
+.|+++++||+|.+..
T Consensus 126 ~~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 126 KYGVPRILFVNKMDRLGA 143 (697)
T ss_pred hcCCCeEEEEECcccccc
Confidence 5699999999998754
No 446
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.63 E-value=7e-05 Score=76.95 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=22.7
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
++..|+++|.+|+|||||+|+|.+..
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~ 30 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTA 30 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcc
Confidence 45569999999999999999998664
No 447
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.62 E-value=0.00027 Score=75.73 Aligned_cols=89 Identities=15% Similarity=0.127 Sum_probs=68.8
Q ss_pred CCCcchhhhhhccccCCcce--EEEecc--------------cc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCC
Q 021210 71 NGSIEAYEEECDWADLDADL--YYWTKS--------------LR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARI 132 (316)
Q Consensus 71 ~~~~g~~~e~e~~~~~d~~~--~~~~~~--------------~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~ 132 (316)
.+.|-...|++.+++++... ..|... .. .+-++||| ..+..++...+..+|.+|+|+|+..
T Consensus 55 ~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliDtPGh-~dF~~e~~~al~~~D~ailVvda~~ 133 (843)
T PLN00116 55 RMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYLINLIDSPGH-VDFSSEVTAALRITDGALVVVDCIE 133 (843)
T ss_pred eeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCceEEEEECCCCH-HHHHHHHHHHHhhcCEEEEEEECCC
Confidence 45677788999999988654 355310 11 26789999 7899999999999999999999999
Q ss_pred CCCCCcHHHHHHh--CCCCEEEEEEccCCC
Q 021210 133 PLSTTHPLMDQWL--GNRKRILVLNREDMI 160 (316)
Q Consensus 133 ~~~~~~~~i~~~l--~~k~~IlVlNK~DLv 160 (316)
+.......+.+.. .++|+++++||+|+.
T Consensus 134 Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 134 GVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred CCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 8866555544443 268999999999987
No 448
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=97.62 E-value=7.8e-05 Score=77.02 Aligned_cols=54 Identities=26% Similarity=0.458 Sum_probs=40.7
Q ss_pred EEeEeccCCCCcchhHHhhhcCcc--cccCCCCCceeeEEEEEe----CCcEEEEeCCCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVLKWVRF----GKDLEFLDSPGI 272 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~--~~vs~~pgtT~~~~~~~~----~~~~~liDTPGi 272 (316)
-|+++|.+|+|||||+|+|.+.+. .......|+|.+.....+ +..+.++||||.
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh 61 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH 61 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH
Confidence 379999999999999999997542 233345699988754333 345789999996
No 449
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.61 E-value=8.6e-05 Score=67.17 Aligned_cols=57 Identities=28% Similarity=0.447 Sum_probs=39.3
Q ss_pred ccceEEeEeccCCCCcchhHHhhhcC-cccccCCCCCceeeEEEEEeCCcEEEEeCCCcc
Q 021210 215 PRAVRAGIVGYPNVGKSSLINRLLKR-RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 273 (316)
Q Consensus 215 ~~~~~i~ivG~pNvGKSTLiN~L~~~-~~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~ 273 (316)
..+..|+++|.+|+|||||+|+|.+. ....++...|+. .+ ....+..+.++||||..
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i-~i-~~~~~~~i~~vDtPg~~ 94 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI-TV-VTGKKRRLTFIECPNDI 94 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE-EE-EecCCceEEEEeCCchH
Confidence 44667999999999999999999875 223344445532 11 11235678999999954
No 450
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=6.9e-05 Score=71.97 Aligned_cols=59 Identities=27% Similarity=0.346 Sum_probs=38.9
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccc------cCCCCCceeeEEE--EEe-C----CcEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP------AAPRPGVTRVLKW--VRF-G----KDLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~------vs~~pgtT~~~~~--~~~-~----~~~~liDTPGi~~ 274 (316)
..++++++|.+|.|||||||+|+...... .+..+.-|..+.. ..+ . -++.++||||+-+
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD 91 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGD 91 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcc
Confidence 46789999999999999999999763221 2223333433322 222 1 1478999999954
No 451
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.58 E-value=9.8e-05 Score=67.83 Aligned_cols=54 Identities=26% Similarity=0.431 Sum_probs=36.4
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCccc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~ 274 (316)
+|+++|.+|||||||+|++.+.... .....|+.+. ..+.++. .+.|+||+|...
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~--~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~ 60 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFE--EQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHP 60 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCC--CCCCCChhHhEEEEEEECCEEEEEEEEECCCChh
Confidence 6899999999999999999865422 2333344332 2333432 367999999753
No 452
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.00048 Score=60.65 Aligned_cols=127 Identities=14% Similarity=0.101 Sum_probs=82.5
Q ss_pred CCCCCCcchhhhhhccccCCcceEEEecccc----ccc-c-ccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--
Q 021210 68 NNSNGSIEAYEEECDWADLDADLYYWTKSLR----PVQ-W-YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-- 139 (316)
Q Consensus 68 ~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~----~i~-~-~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-- 139 (316)
-+-+|++|...|+ +..|+.++...=+-.+. ++| | +-|. +++...+....+.|+-||+|.|...-.+..+.
T Consensus 25 L~~Rf~~~~f~e~-~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQ-ERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~ 102 (205)
T KOG0084|consen 25 LLLRFKDDTFTES-YISTIGVDFKIRTVELDGKTIKLQIWDTAGQ-ERFRTITSSYYRGAHGIIFVYDITKQESFNNVKR 102 (205)
T ss_pred hhhhhccCCcchh-hcceeeeEEEEEEeeecceEEEEEeeecccc-HHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHH
Confidence 3567788877654 55667776664433322 222 3 4454 88888888999999999999999764433221
Q ss_pred ---HHHHHhC-CCCEEEEEEccCCCChHhH--HHHHHHHHhcCce-EEEeccccccchhhhHHH
Q 021210 140 ---LMDQWLG-NRKRILVLNREDMISMADR--NAWATYFAKQGTK-VIFSNGQLGMGTMKLSRL 196 (316)
Q Consensus 140 ---~i~~~l~-~k~~IlVlNK~DLv~~~~~--~~~~~~~~~~g~~-vi~iSa~~g~gi~~L~~~ 196 (316)
++.++.. +.+.++|.||+|+.+.... ++-.++..+.+.. +..+||+.+.++++....
T Consensus 103 Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~ 166 (205)
T KOG0084|consen 103 WIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLT 166 (205)
T ss_pred HHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHH
Confidence 2222222 4599999999999765431 1122333456666 888999999998775543
No 453
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.58 E-value=0.00016 Score=61.95 Aligned_cols=56 Identities=16% Similarity=0.106 Sum_probs=37.2
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee---EEEEEeCC---cEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV---LKWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~---~~~~~~~~---~~~liDTPGi~ 273 (316)
.++|+++|.+|||||||+|++.+... .+..+..|+.. ...+..+. .+.+.||+|-.
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f-~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~ 65 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSF-SLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDE 65 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCC-CcccCCCccCcceEEEEEEECCeEEEEEEEecCCcc
Confidence 46899999999999999999997653 22333344322 12233322 35688999864
No 454
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.58 E-value=3.2e-05 Score=67.55 Aligned_cols=58 Identities=22% Similarity=0.402 Sum_probs=39.7
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccc-----------------cCCCCCceeeEEEEE-----eCCcEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCP-----------------AAPRPGVTRVLKWVR-----FGKDLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~-----------------vs~~pgtT~~~~~~~-----~~~~~~liDTPGi~~ 274 (316)
-++|+++|..++|||||+++|+...... .....|.|.+..... ....+.++||||...
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 3579999999999999999999543211 011246666643322 345689999999753
No 455
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=97.58 E-value=0.00036 Score=63.15 Aligned_cols=98 Identities=13% Similarity=0.021 Sum_probs=61.1
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHH----HHhCCCCEEEEEEccCCCChHh----------
Q 021210 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD----QWLGNRKRILVLNREDMISMAD---------- 164 (316)
Q Consensus 101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~----~~l~~k~~IlVlNK~DLv~~~~---------- 164 (316)
-+++|. .++.+.....+..+|++|+|+|..++.+..+. .+. ....+.|+++|.||+||.+...
T Consensus 54 wDt~G~-e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~ 132 (222)
T cd04173 54 WDTSGS-SYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRL 132 (222)
T ss_pred EeCCCc-HHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccC
Confidence 345666 44554444567999999999999876433221 111 1123679999999999964210
Q ss_pred ----HHHHHHHHHhcC-ceEEEeccccccc-hhhhHHHHHH
Q 021210 165 ----RNAWATYFAKQG-TKVIFSNGQLGMG-TMKLSRLAKA 199 (316)
Q Consensus 165 ----~~~~~~~~~~~g-~~vi~iSa~~g~g-i~~L~~~L~~ 199 (316)
.++-.+..++.| ..++.+||+++.+ ++++...+..
T Consensus 133 ~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~ 173 (222)
T cd04173 133 IPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATV 173 (222)
T ss_pred CccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHH
Confidence 111112223445 4788999999884 9888765443
No 456
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.57 E-value=7.6e-05 Score=63.37 Aligned_cols=31 Identities=42% Similarity=0.608 Sum_probs=25.8
Q ss_pred EeEeccCCCCcchhHHhhhcCcccccCCCCC
Q 021210 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPG 250 (316)
Q Consensus 220 i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pg 250 (316)
|+++|..++|||||||+|+|.....++..|.
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~ 31 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPC 31 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSST
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCccccccc
Confidence 6899999999999999999987766666553
No 457
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.56 E-value=8.1e-05 Score=74.69 Aligned_cols=25 Identities=40% Similarity=0.466 Sum_probs=22.3
Q ss_pred cceEEeEeccCCCCcchhHHhhhcC
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~ 240 (316)
..++|+++|.+|+|||||+++|+..
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~ 50 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHD 50 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHh
Confidence 3589999999999999999999854
No 458
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.56 E-value=0.00036 Score=62.09 Aligned_cols=98 Identities=13% Similarity=-0.042 Sum_probs=62.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHh
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLGNRKRILVLNREDMISMADRNAWATYFAK 174 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~ 174 (316)
+.+++|+ .++..........+|.+++|+|.....+..+ ..+.....+.|++++.||+|+.+.....+..++...
T Consensus 62 ~~Dt~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~ 140 (215)
T PTZ00132 62 VWDTAGQ-EKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRK 140 (215)
T ss_pred EEECCCc-hhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHH
Confidence 3445776 4444434456778999999999876543211 111122246788999999998654322222334445
Q ss_pred cCceEEEeccccccchhhhHHHHH
Q 021210 175 QGTKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 175 ~g~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
.+..++.+|+++|.|+++....+.
T Consensus 141 ~~~~~~e~Sa~~~~~v~~~f~~ia 164 (215)
T PTZ00132 141 KNLQYYDISAKSNYNFEKPFLWLA 164 (215)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHH
Confidence 567789999999999887665443
No 459
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.00041 Score=61.60 Aligned_cols=92 Identities=13% Similarity=0.126 Sum_probs=66.6
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--------CCCEEEEEEccCCCChHh--HHHHHHH
Q 021210 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--------NRKRILVLNREDMISMAD--RNAWATY 171 (316)
Q Consensus 102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--------~k~~IlVlNK~DLv~~~~--~~~~~~~ 171 (316)
|.-+-+.++..-+..+...|+-|++|.|..+..+..+ +..|+. ..+.+||-||+|+..+.+ .+.-.++
T Consensus 66 WDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfen--i~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~l 143 (207)
T KOG0078|consen 66 WDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFEN--IRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEAL 143 (207)
T ss_pred EEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHH--HHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHH
Confidence 4444447788888899999999999999987665544 223432 468999999999976432 1222334
Q ss_pred HHhcCceEEEeccccccchhhhHH
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSR 195 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~ 195 (316)
..+.|..++.+||+.|.|+++...
T Consensus 144 A~e~G~~F~EtSAk~~~NI~eaF~ 167 (207)
T KOG0078|consen 144 AREYGIKFFETSAKTNFNIEEAFL 167 (207)
T ss_pred HHHhCCeEEEccccCCCCHHHHHH
Confidence 456789999999999999887543
No 460
>PRK09866 hypothetical protein; Provisional
Probab=97.53 E-value=0.00015 Score=74.25 Aligned_cols=56 Identities=23% Similarity=0.297 Sum_probs=43.0
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe----CCcEEEEeCCCccc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIP 274 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~----~~~~~liDTPGi~~ 274 (316)
+.++++|.+|+|||||+|+|.|.....+++.+.||.-. ++.. .....+.||-|++.
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~lpT-~i~~~pg~re~~L~~dtvgfI~ 129 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPT-LIRHTPGQKEPVLHFSHVAPID 129 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccccE-EEEecCCcCceeeecCCccchH
Confidence 57999999999999999999999988888887766632 3222 22355678888875
No 461
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=97.53 E-value=0.00023 Score=61.87 Aligned_cols=83 Identities=17% Similarity=0.039 Sum_probs=53.0
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcH--HHHH----HhCCCCEEEEEEccCCCChHh------------HHHHHHHHHhcC-c
Q 021210 117 QLKLMDVVIEVRDARIPLSTTHP--LMDQ----WLGNRKRILVLNREDMISMAD------------RNAWATYFAKQG-T 177 (316)
Q Consensus 117 ~i~~aDlIl~VvDar~~~~~~~~--~i~~----~l~~k~~IlVlNK~DLv~~~~------------~~~~~~~~~~~g-~ 177 (316)
.+..+|.++++.|..+..+..+. .+.. ...+.|+++|.||+|+.+... .++.....++.+ .
T Consensus 69 ~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (187)
T cd04129 69 SYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAK 148 (187)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCc
Confidence 46889999999998654322211 1111 223679999999999854210 111122223445 3
Q ss_pred eEEEeccccccchhhhHHHHHH
Q 021210 178 KVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 178 ~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
.++.+||++|.|++++.+.+.+
T Consensus 149 ~~~e~Sa~~~~~v~~~f~~l~~ 170 (187)
T cd04129 149 KYMECSALTGEGVDDVFEAATR 170 (187)
T ss_pred EEEEccCCCCCCHHHHHHHHHH
Confidence 6889999999999998876654
No 462
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.00017 Score=73.43 Aligned_cols=90 Identities=17% Similarity=0.143 Sum_probs=71.3
Q ss_pred CCCCcchhhhhhccccCCcceE--EEeccccc-----cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHH
Q 021210 70 SNGSIEAYEEECDWADLDADLY--YWTKSLRP-----VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMD 142 (316)
Q Consensus 70 ~~~~~g~~~e~e~~~~~d~~~~--~~~~~~~~-----i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~ 142 (316)
-.|+|.+..|.|.+-.+...-. ..++...+ +-++||| ..+..++...+..+|.+++|+|+..++...-..+.
T Consensus 164 lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGH-VnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~i 242 (971)
T KOG0468|consen 164 LRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGH-VNFSDETTASLRLSDGVVLVVDVAEGVMLNTERII 242 (971)
T ss_pred ccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCc-ccchHHHHHHhhhcceEEEEEEcccCceeeHHHHH
Confidence 4799999999999987766554 44444433 6789999 77999999999999999999999999876655554
Q ss_pred HH-hC-CCCEEEEEEccCCC
Q 021210 143 QW-LG-NRKRILVLNREDMI 160 (316)
Q Consensus 143 ~~-l~-~k~~IlVlNK~DLv 160 (316)
+. +. ..++.+|+||+|.+
T Consensus 243 khaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 243 KHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred HHHHhccCcEEEEEehhHHH
Confidence 43 33 67999999999964
No 463
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.53 E-value=0.00014 Score=62.75 Aligned_cols=54 Identities=22% Similarity=0.268 Sum_probs=34.0
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (316)
++++++|.+|||||||+.++..... .....| |+.+. ..+..+. .+.++||||-.
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f-~~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIP-TVFDNYSANVMVDGKPVNLGLWDTAGQE 60 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCcCCC-cceeeeEEEEEECCEEEEEEEEECCCch
Confidence 5799999999999999999886432 111122 22111 1122222 46799999964
No 464
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.53 E-value=8.2e-05 Score=66.83 Aligned_cols=55 Identities=25% Similarity=0.300 Sum_probs=39.3
Q ss_pred EEeEeccCCCCcchhHHhhhcCccc------------------------------ccCCCCCceeeEEEEEe---CCcEE
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMC------------------------------PAAPRPGVTRVLKWVRF---GKDLE 265 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~------------------------------~vs~~pgtT~~~~~~~~---~~~~~ 265 (316)
+|+++|.+++|||||+.+|+..... ......|+|++.....+ +..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 3799999999999999999632100 01123589998654443 55789
Q ss_pred EEeCCCcc
Q 021210 266 FLDSPGII 273 (316)
Q Consensus 266 liDTPGi~ 273 (316)
++||||..
T Consensus 81 liDtpG~~ 88 (219)
T cd01883 81 ILDAPGHR 88 (219)
T ss_pred EEECCChH
Confidence 99999974
No 465
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.00018 Score=67.37 Aligned_cols=100 Identities=15% Similarity=0.180 Sum_probs=75.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCC----CCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHH----HHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARI----PLSTTHPLMDQWLGNRKRILVLNREDMISMADRNA----WATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~----~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~----~~~~ 171 (316)
.-++||| .-.+..|...++-.|.+++++.+.. |.+++|....+.+.-|+++++-||+||+.+++..+ ..++
T Consensus 129 fVDCPGH-DiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiDli~e~~A~eq~e~I~kF 207 (466)
T KOG0466|consen 129 FVDCPGH-DILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKESQALEQHEQIQKF 207 (466)
T ss_pred eccCCch-HHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhhhhhHHHHHHHHHHHHHH
Confidence 5689999 5566677888888999999998763 45677777677777899999999999998765333 2233
Q ss_pred HHh---cCceEEEeccccccchhhhHHHHHHh
Q 021210 172 FAK---QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 172 ~~~---~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
+.. .|.+++++||.-+.|++.+.+++.+.
T Consensus 208 i~~t~ae~aPiiPisAQlkyNId~v~eyivkk 239 (466)
T KOG0466|consen 208 IQGTVAEGAPIIPISAQLKYNIDVVCEYIVKK 239 (466)
T ss_pred HhccccCCCceeeehhhhccChHHHHHHHHhc
Confidence 322 23579999999999999998887653
No 466
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.51 E-value=0.00013 Score=72.20 Aligned_cols=58 Identities=22% Similarity=0.343 Sum_probs=41.5
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccc------------------------------cCCCCCceeeEEEEEe---CC
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP------------------------------AAPRPGVTRVLKWVRF---GK 262 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~------------------------------vs~~pgtT~~~~~~~~---~~ 262 (316)
..++|+++|..++|||||+++|+...... .....|+|.+.....+ +.
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~ 85 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY 85 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence 35789999999999999999998421110 0123589988765444 34
Q ss_pred cEEEEeCCCcc
Q 021210 263 DLEFLDSPGII 273 (316)
Q Consensus 263 ~~~liDTPGi~ 273 (316)
.+.|+||||..
T Consensus 86 ~i~iiDtpGh~ 96 (426)
T TIGR00483 86 EVTIVDCPGHR 96 (426)
T ss_pred EEEEEECCCHH
Confidence 68899999953
No 467
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.50 E-value=0.00016 Score=69.17 Aligned_cols=59 Identities=22% Similarity=0.326 Sum_probs=38.4
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccC---CC-CC---ceeeEEE--EEe-C----CcEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAA---PR-PG---VTRVLKW--VRF-G----KDLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs---~~-pg---tT~~~~~--~~~-~----~~~~liDTPGi~~ 274 (316)
.+++|+++|.+|.||||+||+|++....... +. +. .|..+.. ..+ + -++.+||||||-+
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD 94 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGD 94 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccc
Confidence 4688999999999999999999987322211 11 22 2222222 122 1 2478999999965
No 468
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.49 E-value=0.00024 Score=59.58 Aligned_cols=97 Identities=12% Similarity=0.055 Sum_probs=64.0
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhC-CCCEEEEEEccCCCChHh--HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-NRKRILVLNREDMISMAD--RNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~-~k~~IlVlNK~DLv~~~~--~~~~~~~ 171 (316)
+-+++|+ .++.......+.++|.+|+++|..+..+..+. .+..... ..|+++|.||+|+.+..+ .++..++
T Consensus 52 i~D~~g~-~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~ 130 (162)
T PF00071_consen 52 IWDTSGQ-ERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEF 130 (162)
T ss_dssp EEEETTS-GGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHH
T ss_pred ccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHH
Confidence 4456776 34544445678999999999998765432221 1222223 478999999999876322 2233344
Q ss_pred HHhcCceEEEeccccccchhhhHHHH
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLA 197 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L 197 (316)
..+.+..++.+|++++.|+.++...+
T Consensus 131 ~~~~~~~~~e~Sa~~~~~v~~~f~~~ 156 (162)
T PF00071_consen 131 AKELGVPYFEVSAKNGENVKEIFQEL 156 (162)
T ss_dssp HHHTTSEEEEEBTTTTTTHHHHHHHH
T ss_pred HHHhCCEEEEEECCCCCCHHHHHHHH
Confidence 55566889999999999998865543
No 469
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.49 E-value=0.00023 Score=61.95 Aligned_cols=55 Identities=16% Similarity=0.261 Sum_probs=35.6
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (316)
+||+++|.+|||||||++++...... -...|.+..+. ..+..+. .+.++||+|-.
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~-~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~ 60 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFD-EDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCCch
Confidence 37899999999999999999865422 11223222222 2233332 46899999964
No 470
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.44 E-value=0.00029 Score=62.71 Aligned_cols=57 Identities=21% Similarity=0.204 Sum_probs=34.4
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcc-cccCCCCCceeeEEEEEeC---CcEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFG---KDLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~-~~vs~~pgtT~~~~~~~~~---~~~~liDTPGi~ 273 (316)
.+|++++|.+|||||||+++++.... ....+..|.......+..+ -.+.++||+|-.
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~ 69 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCch
Confidence 57899999999999999986653321 1122222332222222222 246799999963
No 471
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.44 E-value=0.0004 Score=61.69 Aligned_cols=62 Identities=19% Similarity=0.262 Sum_probs=44.4
Q ss_pred cccccchHHHHHHHHHHHHhhc-CeEEEEEeCCCCCCCCc---HHHHHHh-------CCCCEEEEEEccCCCCh
Q 021210 100 VQWYPGHIAKTEKELKDQLKLM-DVVIEVRDARIPLSTTH---PLMDQWL-------GNRKRILVLNREDMISM 162 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~a-DlIl~VvDar~~~~~~~---~~i~~~l-------~~k~~IlVlNK~DLv~~ 162 (316)
+-++||| .++...+...+..+ +.+|+|+|+........ ..+..++ .+.|+++|.||+|+...
T Consensus 52 l~D~pG~-~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 52 LVDVPGH-PKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred EEECCCC-HHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 6678999 56777777888898 99999999987532111 1222221 26799999999998754
No 472
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.43 E-value=0.00022 Score=64.55 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.5
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
+|+++|..+.|||||+++|+...
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~ 24 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASA 24 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998643
No 473
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.43 E-value=8.8e-05 Score=66.18 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.4
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
+|+++|.+++|||||+++|+...
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~ 24 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQT 24 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Confidence 48999999999999999998643
No 474
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.42 E-value=0.00034 Score=60.75 Aligned_cols=55 Identities=22% Similarity=0.317 Sum_probs=34.9
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE-EEEEeCC---cEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~-~~~~~~~---~~~liDTPGi~ 273 (316)
+||+++|.+|||||||++++.+... .....|.+..+. ..+.++. .+.|+||+|-.
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~ 60 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY-PETYVPTVFENYTASFEIDEQRIELSLWDTSGSP 60 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-CCCcCCceEEEEEEEEEECCEEEEEEEEECCCch
Confidence 4799999999999999999986542 222222211111 1222322 36799999963
No 475
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.41 E-value=0.00029 Score=59.04 Aligned_cols=54 Identities=37% Similarity=0.545 Sum_probs=34.8
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCC--CceeeEEEEEeCC---cEEEEeCCCcc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p--gtT~~~~~~~~~~---~~~liDTPGi~ 273 (316)
||+++|.++||||||++++.+... .-...| |.......+..+. .+.|+||+|-.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 59 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-PENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQE 59 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-TSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSG
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-ccccccccccccccccccccccccccccccccccc
Confidence 589999999999999999997642 222222 2222222233322 47899999964
No 476
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.40 E-value=0.00013 Score=71.78 Aligned_cols=56 Identities=29% Similarity=0.351 Sum_probs=38.4
Q ss_pred eEEeEeccCCCCcchhHHhhhcCccccc--------------C------------------CCCCceeeEEEEEe---CC
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPA--------------A------------------PRPGVTRVLKWVRF---GK 262 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~v--------------s------------------~~pgtT~~~~~~~~---~~ 262 (316)
++|+++|..++|||||+++|+....... + ..-|+|++.....+ +.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 3689999999999999999974321110 0 12367777654433 44
Q ss_pred cEEEEeCCCcc
Q 021210 263 DLEFLDSPGII 273 (316)
Q Consensus 263 ~~~liDTPGi~ 273 (316)
.+.|+||||..
T Consensus 81 ~~~liDtPGh~ 91 (406)
T TIGR02034 81 KFIVADTPGHE 91 (406)
T ss_pred EEEEEeCCCHH
Confidence 68999999953
No 477
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.00019 Score=62.86 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=68.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh----C--CCC--EEEEEEccCCCChH--hHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL----G--NRK--RILVLNREDMISMA--DRNAWA 169 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l----~--~k~--~IlVlNK~DLv~~~--~~~~~~ 169 (316)
..|.-+-.++|..-.....+.|+.+|+|.|..+..+.. .+..|+ . ... +.+|.||+||...- +.++-.
T Consensus 57 eIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~--~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~ 134 (200)
T KOG0092|consen 57 EIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFE--KAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQ 134 (200)
T ss_pred EEEEcCCcccccccccceecCCcEEEEEEecccHHHHH--HHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHH
Confidence 45555444676666667889999999999998654332 222232 1 222 34699999998732 344455
Q ss_pred HHHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
.|..+.|.-++.+||++|.|+++|...|.+.
T Consensus 135 ~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~ 165 (200)
T KOG0092|consen 135 AYAESQGLLFFETSAKTGENVNEIFQAIAEK 165 (200)
T ss_pred HHHHhcCCEEEEEecccccCHHHHHHHHHHh
Confidence 6677788889999999999999987665543
No 478
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=97.35 E-value=0.00046 Score=60.73 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=36.7
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (316)
.+||+++|..+||||||++++..... .....|..+.+. ..+.++. .+.++||||-.
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~ 66 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGST-ESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG 66 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 47899999999999999999986432 111112233332 2233332 46799999975
No 479
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=97.34 E-value=0.00041 Score=61.73 Aligned_cols=54 Identities=30% Similarity=0.384 Sum_probs=35.3
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (316)
.|+++|.+|||||||++++..... .....|.++.+. ..+.++. .+.++||+|-.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f-~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe 60 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTF-CEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQE 60 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC-CCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCch
Confidence 589999999999999999986542 211123223332 2233332 46899999964
No 480
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=97.33 E-value=0.00041 Score=61.86 Aligned_cols=56 Identities=30% Similarity=0.338 Sum_probs=35.5
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccc-cCCCCCceeeEEEEEeC------C--cEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFG------K--DLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~-vs~~pgtT~~~~~~~~~------~--~~~liDTPGi~ 273 (316)
+||+++|.++||||||++++.+..... ..+..|++.....+..+ . .+.|+||+|-.
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e 65 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE 65 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch
Confidence 479999999999999999999764221 11111222222223321 2 36899999964
No 481
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.30 E-value=0.00022 Score=73.10 Aligned_cols=82 Identities=22% Similarity=0.140 Sum_probs=57.6
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHH-Hh-CCCCEEEEEEccCCCChHhHHH-HHHHHHhcCceEEEeccccccchhhhHH
Q 021210 119 KLMDVVIEVRDARIPLSTTHPLMDQ-WL-GNRKRILVLNREDMISMADRNA-WATYFAKQGTKVIFSNGQLGMGTMKLSR 195 (316)
Q Consensus 119 ~~aDlIl~VvDar~~~~~~~~~i~~-~l-~~k~~IlVlNK~DLv~~~~~~~-~~~~~~~~g~~vi~iSa~~g~gi~~L~~ 195 (316)
.+.|+|+.|+||.+- +++..+.- ++ .++|.++++|++|...+...+- ..+.-+.+|.++++++|++|+|+++|++
T Consensus 80 ~~~D~ivnVvDAtnL--eRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~ 157 (653)
T COG0370 80 GKPDLIVNVVDATNL--ERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKR 157 (653)
T ss_pred CCCCEEEEEcccchH--HHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHHH
Confidence 567999999999753 33433322 22 3889999999999876532111 1122235789999999999999999988
Q ss_pred HHHHhhh
Q 021210 196 LAKALAS 202 (316)
Q Consensus 196 ~L~~l~~ 202 (316)
.+.+..+
T Consensus 158 ~i~~~~~ 164 (653)
T COG0370 158 AIIELAE 164 (653)
T ss_pred HHHHhcc
Confidence 7766543
No 482
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=97.30 E-value=0.00052 Score=59.69 Aligned_cols=54 Identities=24% Similarity=0.231 Sum_probs=33.3
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE-EEEeC---CcEEEEeCCCcc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK-WVRFG---KDLEFLDSPGII 273 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~-~~~~~---~~~~liDTPGi~ 273 (316)
|++++|.+|+|||||+|++....... ...+.+..... .+.++ ..+.++||||..
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~ 60 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPE-EYHPTVFENYVTDCRVDGKPVQLALWDTAGQE 60 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCc-ccCCcccceEEEEEEECCEEEEEEEEECCCCh
Confidence 69999999999999999998443211 11221111111 12222 236789999974
No 483
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=97.30 E-value=0.00076 Score=57.29 Aligned_cols=82 Identities=17% Similarity=0.037 Sum_probs=51.9
Q ss_pred HHhhcCeEEEEEeCCCCCCCCc-HHH-HHHh-----CCCCEEEEEEccCCCC--hHhH-HHHHHHH-Hhc-CceEEEecc
Q 021210 117 QLKLMDVVIEVRDARIPLSTTH-PLM-DQWL-----GNRKRILVLNREDMIS--MADR-NAWATYF-AKQ-GTKVIFSNG 184 (316)
Q Consensus 117 ~i~~aDlIl~VvDar~~~~~~~-~~i-~~~l-----~~k~~IlVlNK~DLv~--~~~~-~~~~~~~-~~~-g~~vi~iSa 184 (316)
....+|.+++|+|..+..+..+ ..+ ..+. .+.|+++|.||+||.. ..++ .+..+.+ ++. +..++.+||
T Consensus 62 ~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 141 (158)
T cd04103 62 FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCA 141 (158)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEec
Confidence 3467999999999987654433 111 1111 2458999999999842 1111 1111222 233 367899999
Q ss_pred ccccchhhhHHHHH
Q 021210 185 QLGMGTMKLSRLAK 198 (316)
Q Consensus 185 ~~g~gi~~L~~~L~ 198 (316)
++|.|++++...+.
T Consensus 142 k~~~~i~~~f~~~~ 155 (158)
T cd04103 142 TYGLNVERVFQEAA 155 (158)
T ss_pred CCCCCHHHHHHHHH
Confidence 99999998876543
No 484
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=97.26 E-value=0.00055 Score=61.91 Aligned_cols=55 Identities=24% Similarity=0.366 Sum_probs=35.1
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE-EEEEeCC---cEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~-~~~~~~~---~~~liDTPGi~ 273 (316)
+||+++|.+|||||||++++.+... .....|.+.-+. ..+.++. .+.|+||+|-.
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f-~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e 60 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY-PGSYVPTVFENYTASFEIDKRRIELNMWDTSGSS 60 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCccCCccccceEEEEEECCEEEEEEEEeCCCcH
Confidence 4799999999999999999987542 222223221111 1223322 36789999963
No 485
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=97.25 E-value=0.00032 Score=72.28 Aligned_cols=57 Identities=28% Similarity=0.387 Sum_probs=39.2
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccc--------cC------CCCCceeeEEEEEe-----C---CcEEEEeCCCcccC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCP--------AA------PRPGVTRVLKWVRF-----G---KDLEFLDSPGIIPM 275 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~--------vs------~~pgtT~~~~~~~~-----~---~~~~liDTPGi~~~ 275 (316)
+++++|.+|+|||||+++|+...... +. ...|+|.+...+.+ + ..+.|+||||....
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 68999999999999999998642111 11 12477776543322 2 24789999999753
No 486
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=97.23 E-value=0.00059 Score=71.90 Aligned_cols=89 Identities=16% Similarity=0.038 Sum_probs=64.2
Q ss_pred CCcchhhhhhccccCCcceEE--E--ecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh
Q 021210 72 GSIEAYEEECDWADLDADLYY--W--TKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL 145 (316)
Q Consensus 72 ~~~g~~~e~e~~~~~d~~~~~--~--~~~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l 145 (316)
+.|-...|++.++|++..... | ..... .+-++||| .++...+...+..+|.+|+|+|+..+.......+.+..
T Consensus 56 ~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~-~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~ 134 (720)
T TIGR00490 56 YLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH-VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQA 134 (720)
T ss_pred ecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc-cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHH
Confidence 345556678888888876543 2 11111 26789999 45777888999999999999999988766555554443
Q ss_pred --CCCCEEEEEEccCCCC
Q 021210 146 --GNRKRILVLNREDMIS 161 (316)
Q Consensus 146 --~~k~~IlVlNK~DLv~ 161 (316)
.+.|.++++||+|...
T Consensus 135 ~~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 135 LKENVKPVLFINKVDRLI 152 (720)
T ss_pred HHcCCCEEEEEEChhccc
Confidence 2568899999999863
No 487
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.21 E-value=0.00039 Score=63.91 Aligned_cols=57 Identities=35% Similarity=0.509 Sum_probs=44.0
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE-EE-E-EeCCcEEEEeCCCcccC
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KW-V-RFGKDLEFLDSPGIIPM 275 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~-~~-~-~~~~~~~liDTPGi~~~ 275 (316)
.+++++|+|.|||||+++.|.+.. ..+..+-|||--. +. + ..+.+++|.|-|||+..
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~-s~vasyefttl~~vpG~~~y~gaKiqlldlpgiieg 119 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTF-SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEG 119 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCC-CccccccceeEEEecceEeccccceeeecCcchhcc
Confidence 489999999999999999999764 5666666776543 21 2 23678999999999864
No 488
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=97.20 E-value=0.00084 Score=58.62 Aligned_cols=56 Identities=21% Similarity=0.324 Sum_probs=35.4
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE-EEEEeCC---cEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~-~~~~~~~---~~~liDTPGi~ 273 (316)
.+||+++|.++||||||++++..... .....|.+.-+. ..+.++. .+.|+||+|-.
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f-~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e 64 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYTASFEIDTQRIELSLWDTSGSP 64 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC-CCccCCceeeeeEEEEEECCEEEEEEEEECCCch
Confidence 46899999999999999999986542 111112111111 1223332 37899999963
No 489
>PRK10218 GTP-binding protein; Provisional
Probab=97.19 E-value=0.00052 Score=70.81 Aligned_cols=58 Identities=21% Similarity=0.353 Sum_probs=40.3
Q ss_pred eEEeEeccCCCCcchhHHhhhcCccccc---------------CCCCCceeeEEEEEe---CCcEEEEeCCCcccC
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPA---------------APRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~v---------------s~~pgtT~~~~~~~~---~~~~~liDTPGi~~~ 275 (316)
-+|+++|..++|||||+++|+....... ....|+|.......+ +..+.++||||....
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df 81 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADF 81 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchh
Confidence 3699999999999999999996321111 123567766543333 446899999998653
No 490
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=97.17 E-value=0.0049 Score=52.15 Aligned_cols=115 Identities=10% Similarity=0.012 Sum_probs=74.5
Q ss_pred ccccCCcceEEEeccccc--cccccchHHHHHHHHH-HHHhhcCeEEEEEeCCCCC--CCCcHHHHHHhC-----CCCEE
Q 021210 82 DWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELK-DQLKLMDVVIEVRDARIPL--STTHPLMDQWLG-----NRKRI 151 (316)
Q Consensus 82 ~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~-~~i~~aDlIl~VvDar~~~--~~~~~~i~~~l~-----~k~~I 151 (316)
-.++..++.+-.+..-.. +=+.||. . ..+.++ .....+++|+++|||.++. +....++..++. +.|++
T Consensus 49 miptvGfnmrk~tkgnvtiklwD~gGq-~-rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~L 126 (186)
T KOG0075|consen 49 MIPTVGFNMRKVTKGNVTIKLWDLGGQ-P-RFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLL 126 (186)
T ss_pred hcccccceeEEeccCceEEEEEecCCC-c-cHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEE
Confidence 345666666655544333 2234555 3 345555 4568899999999998864 223345555553 67999
Q ss_pred EEEEccCCCChHhHHHHHHHHHhcC--------ceEEEeccccccchhhhHHHHHHhh
Q 021210 152 LVLNREDMISMADRNAWATYFAKQG--------TKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 152 lVlNK~DLv~~~~~~~~~~~~~~~g--------~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
++.||.|+-+.-...+. ..+.| +-++.+|++...+++.+.+.+.+..
T Consensus 127 VLGnK~d~~~AL~~~~l---i~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 127 VLGNKIDLPGALSKIAL---IERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred EecccccCcccccHHHH---HHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHh
Confidence 99999998654322222 22333 3467899999999999888876543
No 491
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.17 E-value=0.00073 Score=58.71 Aligned_cols=54 Identities=20% Similarity=0.285 Sum_probs=34.8
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee-E-EEEEeCC---cEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-L-KWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~-~-~~~~~~~---~~~liDTPGi~ 273 (316)
+|++++|.++||||||++++..... .-...| |..+ . ..+..+. ++.++||+|-.
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f-~~~~~~-Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~ 60 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIP-TVFDNFSANVSVDGNTVNLGLWDTAGQE 60 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC-CCCCCC-cceeeeEEEEEECCEEEEEEEEECCCCc
Confidence 4799999999999999999996542 222222 2111 1 1122222 46899999964
No 492
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=97.15 E-value=0.0007 Score=59.25 Aligned_cols=56 Identities=21% Similarity=0.283 Sum_probs=34.6
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE-EEEeCC---cEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK-WVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~-~~~~~~---~~~liDTPGi~ 273 (316)
.++|+++|.+|||||||++++..... .-...|....... .+.++. .+.++||+|-.
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e 62 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAF-PKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQE 62 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCC-CcCCCCceEeeeEEEEEECCEEEEEEEEECCCch
Confidence 36899999999999999999986542 1111121111111 122332 37899999963
No 493
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.0013 Score=55.49 Aligned_cols=113 Identities=15% Similarity=0.117 Sum_probs=73.7
Q ss_pred ccCCcceEEEecccc-ccc-cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------CCCCEEEE
Q 021210 84 ADLDADLYYWTKSLR-PVQ-WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILV 153 (316)
Q Consensus 84 ~~~d~~~~~~~~~~~-~i~-~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--------~~k~~IlV 153 (316)
+.+.+..+ |....| ++| |.-..++++..-+-.++..|+.+|++.|..+..+.. .+..|. .+.++|+|
T Consensus 56 idFKvKTv-yr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~--svqdw~tqIktysw~naqvilv 132 (193)
T KOG0093|consen 56 IDFKVKTV-YRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFN--SVQDWITQIKTYSWDNAQVILV 132 (193)
T ss_pred eeEEEeEe-eecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHH--HHHHHHHHheeeeccCceEEEE
Confidence 33444433 333333 344 334445777777778899999999999987643221 233332 16799999
Q ss_pred EEccCCCChHh--HHHHHHHHHhcCceEEEeccccccchhhhHHHHHH
Q 021210 154 LNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 154 lNK~DLv~~~~--~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
.||||+-++.. .+.-.....++|.+++..|++.+.|++++.+.+..
T Consensus 133 gnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~ 180 (193)
T KOG0093|consen 133 GNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVD 180 (193)
T ss_pred ecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHH
Confidence 99999976532 22334455678889999999999999887665443
No 494
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=97.13 E-value=0.00038 Score=60.23 Aligned_cols=56 Identities=25% Similarity=0.485 Sum_probs=38.1
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (316)
...+|+++|..|+||||+++.|.......+.+.-|.. ...+.. +..+.++|.+|=.
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~--~~~i~~~~~~~~~~d~gG~~ 69 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFN--IEEIKYKGYSLTIWDLGGQE 69 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEE--EEEEEETTEEEEEEEESSSG
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccccCcccccc--cceeeeCcEEEEEEeccccc
Confidence 3578999999999999999999876544433322322 222333 3367899998853
No 495
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.0021 Score=57.46 Aligned_cols=113 Identities=16% Similarity=0.153 Sum_probs=64.6
Q ss_pred CCCCCeeEEecCCCCCcCCCCCCCCCCCcchhhhhhccccCCcceEEEeccccccccccchHHHHHHHHHHHHh---hcC
Q 021210 46 SSSAPIIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLK---LMD 122 (316)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~i~~~Pgh~~~~~r~l~~~i~---~aD 122 (316)
+|.++++-++|.. ..+-+.-+-.+.+|....----++...+.++.-.....+-++||| .+..+++.+... ++-
T Consensus 35 rs~~~~Vll~Gl~---dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH-~rlR~kl~e~~~~~~~ak 110 (238)
T KOG0090|consen 35 RSKQNAVLLVGLS---DSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGH-SRLRRKLLEYLKHNYSAK 110 (238)
T ss_pred hccCCcEEEEecC---CCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCc-HHHHHHHHHHccccccce
Confidence 3444677777652 222233333444442111111122222222222233468899999 888889999888 899
Q ss_pred eEEEEEeCCCCCCCCc---HHHHHHhC-------CCCEEEEEEccCCCCh
Q 021210 123 VVIEVRDARIPLSTTH---PLMDQWLG-------NRKRILVLNREDMISM 162 (316)
Q Consensus 123 lIl~VvDar~~~~~~~---~~i~~~l~-------~k~~IlVlNK~DLv~~ 162 (316)
.|++|||+........ ..++..+. ..|++++.||-|+...
T Consensus 111 aiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 111 AIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred eEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 9999999875432221 22233222 3589999999999743
No 496
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=97.12 E-value=0.0005 Score=60.91 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.5
Q ss_pred eEEeEeccCCCCcchhHHhhhcC
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKR 240 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~ 240 (316)
++|+++|..++|||||+.+|.+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~ 23 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV 23 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999754
No 497
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.10 E-value=0.0013 Score=60.37 Aligned_cols=70 Identities=29% Similarity=0.426 Sum_probs=0.0
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCcee---------------------------------------------
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR--------------------------------------------- 253 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~--------------------------------------------- 253 (316)
+++++|..++||||++|+|.+......+....|.+
T Consensus 28 ~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~ 107 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGTN 107 (240)
T ss_pred eEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhcCCC
Q ss_pred -----eEEEEEe----CCcEEEEeCCCcccCCCCCHHHHHHHHh
Q 021210 254 -----VLKWVRF----GKDLEFLDSPGIIPMRISDQAAAIKLAI 288 (316)
Q Consensus 254 -----~~~~~~~----~~~~~liDTPGi~~~~~~~~~~~~~La~ 288 (316)
+...+++ ..++.|+||||+......++...+.-.+
T Consensus 108 ~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i 151 (240)
T smart00053 108 KGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQI 151 (240)
T ss_pred CcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHH
No 498
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=97.09 E-value=0.00046 Score=67.86 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.7
Q ss_pred ceEEeEeccCCCCcchhHHhhhcC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~ 240 (316)
.++|+++|.+|+|||||+++|.+.
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~ 27 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGV 27 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCe
Confidence 478999999999999999999753
No 499
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.08 E-value=0.00069 Score=69.80 Aligned_cols=56 Identities=25% Similarity=0.396 Sum_probs=38.5
Q ss_pred EEeEeccCCCCcchhHHhhhcCccc-----cc----------CCCCCceeeEEE---EEeCCcEEEEeCCCccc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMC-----PA----------APRPGVTRVLKW---VRFGKDLEFLDSPGIIP 274 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~-----~v----------s~~pgtT~~~~~---~~~~~~~~liDTPGi~~ 274 (316)
+|+++|..++|||||+++|+..... .+ ...-|+|..... .+.+..+.|+||||..+
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~D 76 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHAD 76 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHH
Confidence 5899999999999999999853211 11 112467766432 22355789999999854
No 500
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=97.08 E-value=0.0012 Score=56.13 Aligned_cols=53 Identities=28% Similarity=0.263 Sum_probs=33.4
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeCC---cEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~~---~~~liDTPGi~ 273 (316)
++|+++|.+|||||||++++........ .+ +|.. ...+.++. .+.+.||+|-.
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~--~~-~~~~~~~~~i~~~~~~~~l~i~D~~g~~ 58 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQL--ES-PEGGRFKKEVLVDGQSHLLLIRDEGGAP 58 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCC--CC-CCccceEEEEEECCEEEEEEEEECCCCC
Confidence 3689999999999999999875432111 11 1111 11233322 36789999984
Done!