Query 021210
Match_columns 316
No_of_seqs 370 out of 2428
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 14:21:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021210.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021210hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1puj_A YLQF, conserved hypothe 100.0 1E-41 3.5E-46 316.7 21.8 214 100-313 3-216 (282)
2 3cnl_A YLQF, putative uncharac 100.0 7.3E-36 2.5E-40 274.5 4.4 165 100-283 1-166 (262)
3 3ec1_A YQEH GTPase; atnos1, at 99.9 6E-25 2E-29 211.0 14.8 154 108-275 59-225 (369)
4 3h2y_A GTPase family protein; 99.9 1.5E-24 5.1E-29 208.2 13.4 155 108-276 57-225 (368)
5 1mky_A Probable GTP-binding pr 99.9 2E-22 6.9E-27 197.3 13.9 165 108-273 69-239 (439)
6 2hjg_A GTP-binding protein ENG 99.9 1E-22 3.4E-27 199.2 9.3 168 100-274 55-235 (436)
7 4dcu_A GTP-binding protein ENG 99.8 9.2E-21 3.1E-25 186.3 12.6 168 100-274 75-255 (456)
8 1t9h_A YLOQ, probable GTPase E 99.8 2.3E-21 7.8E-26 181.7 7.0 140 117-276 83-238 (307)
9 2yv5_A YJEQ protein; hydrolase 99.8 3.4E-19 1.2E-23 166.4 13.1 138 117-274 76-228 (302)
10 2rcn_A Probable GTPase ENGC; Y 99.8 4.5E-19 1.5E-23 169.3 10.6 144 114-277 124-283 (358)
11 1u0l_A Probable GTPase ENGC; p 99.7 8.8E-18 3E-22 156.7 10.2 140 117-276 81-235 (301)
12 2e87_A Hypothetical protein PH 99.5 1.1E-15 3.7E-20 145.5 -1.9 156 121-277 58-229 (357)
13 2qtf_A Protein HFLX, GTP-bindi 99.4 1.2E-14 3.9E-19 139.2 -4.8 186 66-275 36-239 (364)
14 3j2k_7 ERF3, eukaryotic polype 99.3 4.6E-12 1.6E-16 123.9 11.2 130 65-195 62-217 (439)
15 4a9a_A Ribosome-interacting GT 99.3 2.4E-12 8E-17 123.6 6.1 58 217-275 72-132 (376)
16 3p26_A Elongation factor 1 alp 99.3 1.3E-11 4.5E-16 122.0 10.0 127 65-192 78-227 (483)
17 1zun_B Sulfate adenylate trans 99.2 1.1E-11 3.8E-16 120.8 8.3 134 66-200 72-233 (434)
18 1wb1_A Translation elongation 99.1 1.5E-10 5.2E-15 114.4 10.4 130 71-201 46-187 (482)
19 1r5b_A Eukaryotic peptide chai 99.1 8E-11 2.7E-15 116.0 8.2 125 67-193 90-242 (467)
20 1kk1_A EIF2gamma; initiation o 99.1 5.7E-10 2E-14 107.8 10.8 125 75-200 37-197 (410)
21 1f60_A Elongation factor EEF1A 99.0 5.9E-11 2E-15 116.6 3.5 126 66-192 53-201 (458)
22 3sjy_A Translation initiation 99.0 1.1E-09 3.7E-14 105.7 11.4 100 100-200 79-189 (403)
23 3cb4_D GTP-binding protein LEP 99.0 8.7E-10 3E-14 111.7 10.6 160 71-240 39-216 (599)
24 3lxw_A GTPase IMAP family memb 99.0 2.2E-10 7.4E-15 103.4 5.2 60 216-275 20-83 (247)
25 1s0u_A EIF-2-gamma, translatio 99.0 4.2E-10 1.4E-14 108.8 7.5 100 100-200 85-195 (408)
26 1wf3_A GTP-binding protein; GT 99.0 2.7E-10 9.4E-15 106.0 5.8 58 218-275 8-68 (301)
27 1jny_A EF-1-alpha, elongation 99.0 3.1E-10 1.1E-14 110.7 6.3 122 70-192 56-202 (435)
28 3izq_1 HBS1P, elongation facto 99.0 1.5E-10 5.1E-15 117.7 4.1 128 65-193 212-362 (611)
29 1svi_A GTP-binding protein YSX 99.0 6.6E-10 2.3E-14 94.7 7.4 61 217-277 23-84 (195)
30 3gee_A MNME, tRNA modification 99.0 1.6E-10 5.3E-15 114.2 3.9 59 216-274 232-293 (476)
31 3pqc_A Probable GTP-binding pr 99.0 1.1E-09 3.6E-14 93.0 8.3 60 217-276 23-82 (195)
32 1x3s_A RAS-related protein RAB 99.0 6.5E-10 2.2E-14 94.4 6.7 119 100-232 68-194 (195)
33 1mky_A Probable GTP-binding pr 99.0 1.9E-10 6.4E-15 112.3 3.5 56 219-274 3-61 (439)
34 1xzp_A Probable tRNA modificat 99.0 1.3E-10 4.4E-15 115.0 2.3 57 217-273 243-302 (482)
35 2c78_A Elongation factor TU-A; 99.0 1.6E-09 5.4E-14 104.6 9.6 116 73-189 50-180 (405)
36 4dhe_A Probable GTP-binding pr 99.0 7.4E-10 2.5E-14 96.7 6.4 59 217-275 29-92 (223)
37 3i8s_A Ferrous iron transport 98.9 6.8E-10 2.3E-14 101.7 6.3 59 217-276 3-64 (274)
38 3lxx_A GTPase IMAP family memb 98.9 8.7E-10 3E-14 98.2 6.5 64 216-280 28-96 (239)
39 2gj8_A MNME, tRNA modification 98.9 6.7E-10 2.3E-14 93.9 5.5 59 217-275 4-65 (172)
40 3iev_A GTP-binding protein ERA 98.9 6.9E-10 2.3E-14 103.4 5.9 60 217-276 10-73 (308)
41 4dhe_A Probable GTP-binding pr 98.9 6.4E-09 2.2E-13 90.6 11.4 103 100-202 83-210 (223)
42 1d2e_A Elongation factor TU (E 98.9 1.4E-09 4.8E-14 104.7 7.6 127 73-200 41-192 (397)
43 3iby_A Ferrous iron transport 98.9 1.5E-09 5.1E-14 98.6 7.0 58 219-277 3-63 (256)
44 3mca_A HBS1, elongation factor 98.9 7.4E-11 2.5E-15 119.5 -2.1 136 65-201 222-395 (592)
45 3def_A T7I23.11 protein; chlor 98.9 2.7E-09 9.2E-14 96.7 8.1 62 216-277 35-99 (262)
46 1h65_A Chloroplast outer envel 98.9 1.8E-09 6.3E-14 98.2 6.8 60 217-276 39-101 (270)
47 3a1s_A Iron(II) transport prot 98.9 2.7E-09 9.4E-14 96.9 7.5 64 217-281 5-71 (258)
48 3b1v_A Ferrous iron uptake tra 98.9 3.3E-09 1.1E-13 97.3 7.9 60 217-277 3-64 (272)
49 3geh_A MNME, tRNA modification 98.9 7E-10 2.4E-14 109.2 3.0 59 216-274 223-284 (462)
50 2cxx_A Probable GTP-binding pr 98.9 4.2E-09 1.4E-13 89.0 7.4 56 218-275 2-57 (190)
51 1ega_A Protein (GTP-binding pr 98.9 1.5E-09 5.1E-14 100.8 5.0 56 218-273 9-67 (301)
52 2xtp_A GTPase IMAP family memb 98.8 2.9E-09 1E-13 95.8 6.5 62 216-277 21-86 (260)
53 3avx_A Elongation factor TS, e 98.8 1.2E-08 4.1E-13 109.3 12.0 128 72-200 333-483 (1289)
54 3k53_A Ferrous iron transport 98.8 4E-09 1.4E-13 96.0 7.2 64 217-281 3-69 (271)
55 1f5n_A Interferon-induced guan 98.8 2.5E-09 8.6E-14 108.0 5.7 57 217-275 38-104 (592)
56 2wji_A Ferrous iron transport 98.8 5.3E-09 1.8E-13 87.3 6.6 59 217-276 3-64 (165)
57 2elf_A Protein translation elo 98.8 1.6E-08 5.6E-13 96.6 10.2 119 81-202 43-179 (370)
58 3iev_A GTP-binding protein ERA 98.8 2.2E-08 7.5E-13 93.1 10.6 93 110-202 82-181 (308)
59 3t5d_A Septin-7; GTP-binding p 98.8 5E-09 1.7E-13 95.6 6.0 59 216-274 7-77 (274)
60 1wxq_A GTP-binding protein; st 98.8 1.8E-09 6.1E-14 104.3 3.1 56 218-274 1-83 (397)
61 1svi_A GTP-binding protein YSX 98.8 4E-08 1.4E-12 83.5 11.1 101 100-200 73-192 (195)
62 1pui_A ENGB, probable GTP-bind 98.8 4.2E-09 1.4E-13 91.0 4.8 58 217-274 26-84 (210)
63 2wjg_A FEOB, ferrous iron tran 98.8 1.5E-08 5E-13 85.7 8.0 59 217-276 7-68 (188)
64 2nzj_A GTP-binding protein REM 98.8 1E-08 3.4E-13 85.3 6.4 58 217-274 4-64 (175)
65 1jal_A YCHF protein; nucleotid 98.7 4.4E-09 1.5E-13 100.4 4.5 57 218-275 3-79 (363)
66 3t5g_A GTP-binding protein RHE 98.7 2.1E-09 7.1E-14 90.5 1.9 114 100-232 58-180 (181)
67 4bas_A ADP-ribosylation factor 98.7 6.5E-09 2.2E-13 88.6 5.0 101 100-201 67-187 (199)
68 3pqc_A Probable GTP-binding pr 98.7 6.2E-08 2.1E-12 81.9 10.8 82 119-200 103-191 (195)
69 2dyk_A GTP-binding protein; GT 98.7 5.3E-09 1.8E-13 85.8 4.0 57 218-274 2-61 (161)
70 2h57_A ADP-ribosylation factor 98.7 1E-08 3.6E-13 87.2 5.9 101 100-201 71-185 (190)
71 3t1o_A Gliding protein MGLA; G 98.7 8.8E-09 3E-13 87.3 5.4 100 100-200 78-189 (198)
72 2qu8_A Putative nucleolar GTP- 98.7 9.9E-09 3.4E-13 90.4 5.4 58 216-274 28-88 (228)
73 2aka_B Dynamin-1; fusion prote 98.7 3.2E-09 1.1E-13 97.1 2.2 35 216-250 25-64 (299)
74 1r8s_A ADP-ribosylation factor 98.7 1.8E-08 6.2E-13 83.0 6.6 100 100-200 48-159 (164)
75 3bc1_A RAS-related protein RAB 98.7 1.8E-08 6.2E-13 84.9 6.6 101 100-201 74-183 (195)
76 1u8z_A RAS-related protein RAL 98.7 2.8E-08 9.4E-13 81.6 7.2 99 100-199 56-163 (168)
77 2ohf_A Protein OLA1, GTP-bindi 98.7 7.6E-09 2.6E-13 99.8 4.3 60 215-275 20-99 (396)
78 1zd9_A ADP-ribosylation factor 98.7 4.8E-08 1.6E-12 83.1 8.9 100 100-200 71-182 (188)
79 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 1.5E-08 5.2E-13 97.6 6.3 61 215-275 18-98 (392)
80 1upt_A ARL1, ADP-ribosylation 98.7 1E-08 3.4E-13 85.0 4.4 100 100-200 55-166 (171)
81 4dcu_A GTP-binding protein ENG 98.7 5.7E-08 2E-12 95.0 10.4 122 81-202 226-368 (456)
82 2x2e_A Dynamin-1; nitration, h 98.7 1.7E-08 6E-13 95.5 6.1 34 217-250 31-69 (353)
83 1zj6_A ADP-ribosylation factor 98.7 2.2E-08 7.4E-13 85.0 6.0 101 100-201 64-176 (187)
84 2ywe_A GTP-binding protein LEP 98.7 4.5E-08 1.5E-12 99.1 9.3 129 71-201 41-182 (600)
85 1ksh_A ARF-like protein 2; sma 98.7 2E-08 6.8E-13 84.9 5.6 101 100-201 66-178 (186)
86 1z0j_A RAB-22, RAS-related pro 98.7 2.9E-08 1E-12 81.9 6.5 59 216-274 5-67 (170)
87 1xzp_A Probable tRNA modificat 98.7 4.4E-08 1.5E-12 96.8 8.7 88 112-200 315-402 (482)
88 2f7s_A C25KG, RAS-related prot 98.7 6.8E-08 2.3E-12 83.8 8.8 98 100-200 88-196 (217)
89 2g6b_A RAS-related protein RAB 98.6 2.8E-08 9.4E-13 83.1 5.9 100 100-200 64-171 (180)
90 3q72_A GTP-binding protein RAD 98.6 2E-08 6.8E-13 82.9 4.8 57 218-274 3-61 (166)
91 2a9k_A RAS-related protein RAL 98.6 3.7E-08 1.3E-12 82.6 6.6 100 100-200 70-178 (187)
92 2dyk_A GTP-binding protein; GT 98.6 3E-08 1E-12 81.3 5.7 97 100-199 53-158 (161)
93 1z0f_A RAB14, member RAS oncog 98.6 3.6E-08 1.2E-12 82.1 6.3 99 100-199 68-174 (179)
94 2efe_B Small GTP-binding prote 98.6 2.6E-08 9E-13 83.3 5.3 101 100-201 65-173 (181)
95 3tr5_A RF-3, peptide chain rel 98.6 7.6E-08 2.6E-12 96.1 9.5 88 74-162 58-149 (528)
96 3cph_A RAS-related protein SEC 98.6 3.2E-08 1.1E-12 85.3 5.9 101 100-201 73-180 (213)
97 1wf3_A GTP-binding protein; GT 98.6 5E-08 1.7E-12 90.6 7.2 91 110-201 76-171 (301)
98 2b6h_A ADP-ribosylation factor 98.6 3.7E-08 1.3E-12 84.5 5.9 99 100-199 77-187 (192)
99 1jwy_B Dynamin A GTPase domain 98.6 3.2E-08 1.1E-12 91.2 5.9 26 217-242 24-49 (315)
100 1kao_A RAP2A; GTP-binding prot 98.6 4.3E-08 1.5E-12 80.4 5.6 100 100-200 55-163 (167)
101 2h17_A ADP-ribosylation factor 98.6 1.5E-08 5.2E-13 85.6 2.8 98 100-198 69-178 (181)
102 2hjg_A GTP-binding protein ENG 98.6 1.5E-07 5E-12 91.6 10.1 122 81-202 206-348 (436)
103 2erx_A GTP-binding protein DI- 98.6 7.7E-08 2.6E-12 79.4 6.7 101 100-201 55-165 (172)
104 1r2q_A RAS-related protein RAB 98.6 3.1E-08 1E-12 81.6 4.2 100 100-200 59-166 (170)
105 2y8e_A RAB-protein 6, GH09086P 98.6 4.9E-08 1.7E-12 81.2 5.3 100 100-200 67-174 (179)
106 1ek0_A Protein (GTP-binding pr 98.6 6.8E-08 2.3E-12 79.5 6.1 57 217-273 3-63 (170)
107 1kao_A RAP2A; GTP-binding prot 98.6 9.5E-08 3.2E-12 78.3 6.8 55 217-273 3-62 (167)
108 3tw8_B RAS-related protein RAB 98.6 2E-08 7E-13 83.7 2.7 102 100-202 62-170 (181)
109 3kkq_A RAS-related protein M-R 98.6 7E-08 2.4E-12 81.1 6.0 100 100-200 70-179 (183)
110 2il1_A RAB12; G-protein, GDP, 98.5 9.5E-08 3.2E-12 81.6 6.7 99 100-199 79-186 (192)
111 3clv_A RAB5 protein, putative; 98.5 7E-08 2.4E-12 81.7 5.7 100 100-200 97-201 (208)
112 1moz_A ARL1, ADP-ribosylation 98.5 2.4E-08 8E-13 83.9 2.7 101 100-201 66-178 (183)
113 1fzq_A ADP-ribosylation factor 98.5 1.3E-07 4.4E-12 80.1 7.3 100 100-200 64-175 (181)
114 2j69_A Bacterial dynamin-like 98.5 9.4E-08 3.2E-12 98.5 7.6 35 217-251 69-103 (695)
115 1z2a_A RAS-related protein RAB 98.5 4.5E-08 1.6E-12 80.6 4.3 99 100-199 58-163 (168)
116 2ged_A SR-beta, signal recogni 98.5 4.6E-08 1.6E-12 83.1 4.4 82 186-276 22-105 (193)
117 2g6b_A RAS-related protein RAB 98.5 1.2E-07 4E-12 79.3 6.8 58 216-273 9-71 (180)
118 2bov_A RAla, RAS-related prote 98.5 1.2E-07 4.3E-12 81.0 7.1 100 100-200 66-174 (206)
119 1z0j_A RAB-22, RAS-related pro 98.5 7.6E-08 2.6E-12 79.4 5.4 100 100-200 59-166 (170)
120 1c1y_A RAS-related protein RAP 98.5 9.4E-08 3.2E-12 78.6 5.9 99 100-199 55-163 (167)
121 2fg5_A RAB-22B, RAS-related pr 98.5 8.8E-08 3E-12 81.7 5.9 58 216-273 22-83 (192)
122 2lkc_A Translation initiation 98.5 3.1E-08 1.1E-12 82.6 2.9 57 216-273 7-66 (178)
123 3r7w_A Gtpase1, GTP-binding pr 98.5 5.9E-08 2E-12 90.1 5.0 58 217-274 3-64 (307)
124 1ek0_A Protein (GTP-binding pr 98.5 6.6E-08 2.3E-12 79.6 4.8 99 100-199 56-165 (170)
125 3bwd_D RAC-like GTP-binding pr 98.5 3.5E-08 1.2E-12 82.6 3.1 99 100-199 60-177 (182)
126 1r2q_A RAS-related protein RAB 98.5 1.1E-07 3.7E-12 78.3 6.0 59 216-274 5-67 (170)
127 2dby_A GTP-binding protein; GD 98.5 2.8E-08 9.6E-13 95.0 2.8 57 218-275 2-82 (368)
128 2fg5_A RAB-22B, RAS-related pr 98.5 6.4E-08 2.2E-12 82.6 4.7 101 100-201 76-184 (192)
129 4dsu_A GTPase KRAS, isoform 2B 98.5 1.9E-07 6.6E-12 78.4 7.6 101 100-201 56-164 (189)
130 1upt_A ARL1, ADP-ribosylation 98.5 7.7E-08 2.6E-12 79.6 5.0 56 216-273 6-62 (171)
131 2hup_A RAS-related protein RAB 98.5 1.7E-07 5.9E-12 80.8 7.5 100 100-200 82-190 (201)
132 3tkl_A RAS-related protein RAB 98.5 9.3E-08 3.2E-12 81.1 5.7 100 100-200 69-176 (196)
133 3gee_A MNME, tRNA modification 98.5 1.4E-07 4.8E-12 93.1 7.7 99 100-201 285-396 (476)
134 2lkc_A Translation initiation 98.5 3.3E-08 1.1E-12 82.5 2.7 101 100-202 59-170 (178)
135 2qpt_A EH domain-containing pr 98.5 6.9E-08 2.4E-12 96.9 5.5 39 216-254 64-104 (550)
136 2gf0_A GTP-binding protein DI- 98.5 1.7E-07 5.8E-12 79.7 7.2 101 100-201 60-169 (199)
137 3qq5_A Small GTP-binding prote 98.5 5.6E-08 1.9E-12 94.5 4.5 59 217-275 34-96 (423)
138 1z0f_A RAB14, member RAS oncog 98.5 1.5E-07 5.1E-12 78.3 6.5 59 216-274 14-76 (179)
139 2fu5_C RAS-related protein RAB 98.5 7.7E-08 2.6E-12 80.9 4.8 99 100-201 61-169 (183)
140 4dsu_A GTPase KRAS, isoform 2B 98.5 1.6E-07 5.5E-12 78.9 6.7 56 217-274 4-64 (189)
141 2hxs_A RAB-26, RAS-related pro 98.5 8E-08 2.7E-12 80.1 4.8 100 100-200 60-170 (178)
142 2j1l_A RHO-related GTP-binding 98.5 1.8E-07 6.2E-12 81.4 7.2 101 100-201 86-207 (214)
143 2fn4_A P23, RAS-related protei 98.5 7.7E-08 2.6E-12 80.2 4.6 101 100-201 61-170 (181)
144 2x77_A ADP-ribosylation factor 98.5 1.6E-08 5.5E-13 85.8 0.4 101 100-201 70-182 (189)
145 2yc2_C IFT27, small RAB-relate 98.5 1.2E-07 4.1E-12 81.1 5.7 100 100-200 77-189 (208)
146 3dz8_A RAS-related protein RAB 98.5 2.4E-07 8.1E-12 78.9 7.5 100 100-200 76-183 (191)
147 3tw8_B RAS-related protein RAB 98.5 1.2E-07 4.3E-12 78.9 5.7 58 216-274 8-70 (181)
148 1g16_A RAS-related protein SEC 98.5 7.1E-08 2.4E-12 79.6 4.1 101 100-201 56-163 (170)
149 3con_A GTPase NRAS; structural 98.5 1.9E-07 6.7E-12 79.0 6.9 101 100-201 73-181 (190)
150 1mh1_A RAC1; GTP-binding, GTPa 98.5 4.3E-08 1.5E-12 82.2 2.7 101 100-201 57-178 (186)
151 2j0v_A RAC-like GTP-binding pr 98.5 3.6E-08 1.2E-12 85.3 2.2 101 100-201 61-178 (212)
152 4djt_A GTP-binding nuclear pro 98.5 8.4E-08 2.9E-12 83.3 4.6 101 100-201 65-173 (218)
153 1zbd_A Rabphilin-3A; G protein 98.5 1.7E-07 5.8E-12 80.3 6.4 100 100-200 61-168 (203)
154 2ce2_X GTPase HRAS; signaling 98.5 1.9E-07 6.6E-12 76.1 6.5 100 100-200 55-162 (166)
155 1u8z_A RAS-related protein RAL 98.5 2.3E-07 7.8E-12 76.0 6.8 55 217-273 4-63 (168)
156 2oil_A CATX-8, RAS-related pro 98.5 2E-07 6.9E-12 79.2 6.6 60 215-274 23-86 (193)
157 1wms_A RAB-9, RAB9, RAS-relate 98.5 1.8E-07 6.1E-12 77.9 6.2 56 217-273 7-67 (177)
158 3gj0_A GTP-binding nuclear pro 98.5 3.1E-08 1.1E-12 86.4 1.5 100 100-200 68-172 (221)
159 2www_A Methylmalonic aciduria 98.5 4.1E-08 1.4E-12 93.1 2.4 24 216-239 73-96 (349)
160 2atx_A Small GTP binding prote 98.5 7.2E-08 2.4E-12 82.1 3.6 99 100-199 70-189 (194)
161 3q72_A GTP-binding protein RAD 98.5 2.4E-07 8.4E-12 76.2 6.8 100 100-200 53-161 (166)
162 1z2a_A RAS-related protein RAB 98.5 2.3E-07 7.9E-12 76.3 6.5 58 216-274 4-66 (168)
163 1fzq_A ADP-ribosylation factor 98.5 8.5E-08 2.9E-12 81.3 4.0 57 216-274 15-72 (181)
164 2h17_A ADP-ribosylation factor 98.5 1.1E-07 3.8E-12 80.2 4.6 58 216-274 20-77 (181)
165 3o47_A ADP-ribosylation factor 98.5 1.8E-07 6.1E-12 87.8 6.4 116 84-200 195-324 (329)
166 1ksh_A ARF-like protein 2; sma 98.5 1.4E-07 4.7E-12 79.6 5.1 56 216-273 17-73 (186)
167 3gj0_A GTP-binding nuclear pro 98.5 1.4E-07 4.7E-12 82.3 5.3 60 216-275 14-77 (221)
168 2qu8_A Putative nucleolar GTP- 98.5 8.6E-07 2.9E-11 77.9 10.5 89 113-201 101-203 (228)
169 2gf9_A RAS-related protein RAB 98.5 3.1E-07 1.1E-11 77.9 7.3 58 216-273 21-82 (189)
170 2bme_A RAB4A, RAS-related prot 98.4 1.4E-07 4.8E-12 79.3 5.1 100 100-200 63-170 (186)
171 2p5s_A RAS and EF-hand domain 98.4 1.7E-07 5.7E-12 80.4 5.6 99 100-199 81-193 (199)
172 1lnz_A SPO0B-associated GTP-bi 98.4 5.5E-08 1.9E-12 92.0 2.8 55 219-274 160-218 (342)
173 2oil_A CATX-8, RAS-related pro 98.4 1.8E-07 6.1E-12 79.5 5.6 100 100-200 78-185 (193)
174 2efe_B Small GTP-binding prote 98.4 2.7E-07 9.1E-12 77.1 6.5 59 216-274 11-73 (181)
175 1ky3_A GTP-binding protein YPT 98.4 2.4E-07 8.3E-12 77.1 6.2 100 100-200 62-175 (182)
176 1moz_A ARL1, ADP-ribosylation 98.4 1.2E-07 4E-12 79.6 4.3 57 216-274 17-74 (183)
177 1z08_A RAS-related protein RAB 98.4 2.7E-07 9.1E-12 76.2 6.3 57 216-273 5-66 (170)
178 2gco_A H9, RHO-related GTP-bin 98.4 1.3E-07 4.3E-12 81.4 4.5 100 100-200 77-197 (201)
179 2p5s_A RAS and EF-hand domain 98.4 1.9E-07 6.6E-12 80.1 5.6 58 216-273 27-88 (199)
180 1z06_A RAS-related protein RAB 98.4 4.5E-07 1.6E-11 76.8 7.9 97 100-197 73-182 (189)
181 1f6b_A SAR1; gtpases, N-termin 98.4 1.1E-07 3.9E-12 81.9 4.1 99 100-199 73-195 (198)
182 1z06_A RAS-related protein RAB 98.4 3E-07 1E-11 78.0 6.7 58 216-273 19-80 (189)
183 3reg_A RHO-like small GTPase; 98.4 7.4E-08 2.5E-12 82.1 2.9 100 100-200 75-185 (194)
184 1g16_A RAS-related protein SEC 98.4 2E-07 6.7E-12 76.8 5.4 58 217-275 3-65 (170)
185 1z08_A RAS-related protein RAB 98.4 1E-07 3.4E-12 78.8 3.6 98 101-199 60-165 (170)
186 2a5j_A RAS-related protein RAB 98.4 1E-07 3.4E-12 81.2 3.6 100 100-200 74-181 (191)
187 1c1y_A RAS-related protein RAP 98.4 2.6E-07 9E-12 75.8 6.1 56 217-274 3-63 (167)
188 2y8e_A RAB-protein 6, GH09086P 98.4 2.7E-07 9.1E-12 76.7 6.1 57 217-274 14-75 (179)
189 1zbd_A Rabphilin-3A; G protein 98.4 3.6E-07 1.2E-11 78.2 7.1 58 216-273 7-68 (203)
190 1zj6_A ADP-ribosylation factor 98.4 1.7E-07 5.7E-12 79.4 4.9 57 217-274 16-72 (187)
191 2nzj_A GTP-binding protein REM 98.4 3.3E-07 1.1E-11 76.0 6.6 101 100-200 56-166 (175)
192 2h57_A ADP-ribosylation factor 98.4 2.8E-07 9.4E-12 78.2 6.2 58 216-273 20-78 (190)
193 2o52_A RAS-related protein RAB 98.4 1.4E-07 4.7E-12 81.2 4.3 100 100-200 78-185 (200)
194 1ega_A Protein (GTP-binding pr 98.4 1.4E-07 4.9E-12 87.4 4.6 101 100-201 60-173 (301)
195 1lnz_A SPO0B-associated GTP-bi 98.4 2.8E-07 9.5E-12 87.2 6.7 121 81-202 188-329 (342)
196 3llu_A RAS-related GTP-binding 98.4 1.9E-07 6.4E-12 80.1 5.0 97 100-198 73-192 (196)
197 2x77_A ADP-ribosylation factor 98.4 2E-07 6.9E-12 78.9 5.1 56 216-273 21-77 (189)
198 2il1_A RAB12; G-protein, GDP, 98.4 2.7E-07 9.3E-12 78.7 5.9 58 216-273 25-86 (192)
199 3q85_A GTP-binding protein REM 98.4 5.8E-07 2E-11 74.2 7.6 99 100-199 55-163 (169)
200 2ce2_X GTPase HRAS; signaling 98.4 4.4E-07 1.5E-11 74.0 6.8 56 217-274 3-63 (166)
201 1m2o_B GTP-binding protein SAR 98.4 8.7E-08 3E-12 81.9 2.6 98 100-198 71-187 (190)
202 2fh5_B SR-beta, signal recogni 98.4 5.7E-07 1.9E-11 77.7 7.9 99 100-199 58-212 (214)
203 2gf9_A RAS-related protein RAB 98.4 8.5E-08 2.9E-12 81.4 2.6 100 100-200 75-182 (189)
204 2erx_A GTP-binding protein DI- 98.4 1.5E-07 5.2E-12 77.5 4.0 56 217-274 3-63 (172)
205 3th5_A RAS-related C3 botulinu 97.8 3.4E-08 1.2E-12 85.1 0.0 98 100-198 82-200 (204)
206 3t5g_A GTP-binding protein RHE 98.4 3.6E-07 1.2E-11 76.5 6.3 56 217-274 6-66 (181)
207 1x3s_A RAS-related protein RAB 98.4 3.5E-07 1.2E-11 77.3 6.3 58 217-274 15-76 (195)
208 2a5j_A RAS-related protein RAB 98.4 3E-07 1E-11 78.2 5.8 59 216-274 20-82 (191)
209 2a9k_A RAS-related protein RAL 98.4 4.6E-07 1.6E-11 75.8 6.8 56 217-274 18-78 (187)
210 2fn4_A P23, RAS-related protei 98.4 2.9E-07 9.9E-12 76.6 5.5 57 216-274 8-69 (181)
211 2bme_A RAB4A, RAS-related prot 98.4 4.1E-07 1.4E-11 76.4 6.4 57 216-273 9-70 (186)
212 2ew1_A RAS-related protein RAB 98.4 2.2E-07 7.4E-12 80.6 4.7 100 100-200 79-186 (201)
213 3cph_A RAS-related protein SEC 98.4 4.3E-07 1.5E-11 78.1 6.6 58 216-274 19-81 (213)
214 3tkl_A RAS-related protein RAB 98.4 4E-07 1.4E-11 77.2 6.2 58 216-274 15-77 (196)
215 1wms_A RAB-9, RAB9, RAS-relate 98.4 3.9E-07 1.3E-11 75.8 6.0 100 100-200 60-171 (177)
216 3clv_A RAB5 protein, putative; 98.4 4.2E-07 1.4E-11 76.8 6.3 26 216-241 6-31 (208)
217 2q3h_A RAS homolog gene family 98.4 1.2E-07 4E-12 81.2 2.8 100 100-200 72-192 (201)
218 4gzl_A RAS-related C3 botulinu 98.4 1.2E-07 4.1E-12 82.0 2.8 99 100-199 82-201 (204)
219 2bov_A RAla, RAS-related prote 98.4 5.2E-07 1.8E-11 77.0 6.8 57 216-274 13-74 (206)
220 4bas_A ADP-ribosylation factor 98.4 3.9E-07 1.3E-11 77.4 6.0 57 216-274 16-75 (199)
221 4djt_A GTP-binding nuclear pro 98.4 3E-07 1E-11 79.7 5.4 60 216-275 10-74 (218)
222 2fh5_B SR-beta, signal recogni 98.4 3.5E-07 1.2E-11 79.1 5.7 55 217-273 7-65 (214)
223 3con_A GTPase NRAS; structural 98.4 5.1E-07 1.8E-11 76.3 6.6 55 217-273 21-80 (190)
224 1m2o_B GTP-binding protein SAR 98.4 2.6E-07 8.7E-12 79.0 4.6 56 217-274 23-79 (190)
225 1vg8_A RAS-related protein RAB 98.4 7E-08 2.4E-12 82.7 1.0 101 100-201 61-173 (207)
226 3vqt_A RF-3, peptide chain rel 98.4 1E-06 3.6E-11 88.3 9.7 90 71-161 73-166 (548)
227 2bcg_Y Protein YP2, GTP-bindin 98.4 1.5E-07 5.1E-12 81.0 3.0 100 100-200 61-168 (206)
228 1vg8_A RAS-related protein RAB 98.4 4.5E-07 1.5E-11 77.6 6.0 56 217-273 8-68 (207)
229 2hxs_A RAB-26, RAS-related pro 98.4 3.9E-07 1.3E-11 75.8 5.4 59 216-274 5-68 (178)
230 1f6b_A SAR1; gtpases, N-termin 98.4 2.2E-07 7.4E-12 80.0 3.9 56 217-274 25-81 (198)
231 2gj8_A MNME, tRNA modification 98.3 3.1E-07 1.1E-11 77.3 4.7 84 113-201 76-164 (172)
232 3j25_A Tetracycline resistance 98.3 3.8E-07 1.3E-11 93.0 6.1 89 71-160 40-132 (638)
233 1r8s_A ADP-ribosylation factor 98.3 3.7E-07 1.2E-11 75.0 4.9 55 218-274 1-56 (164)
234 2o52_A RAS-related protein RAB 98.3 4.7E-07 1.6E-11 77.8 5.7 58 215-273 23-85 (200)
235 3kkq_A RAS-related protein M-R 98.3 7.8E-07 2.7E-11 74.6 7.0 57 216-274 17-78 (183)
236 3lvq_E ARF-GAP with SH3 domain 98.3 2.6E-07 9E-12 90.9 4.6 118 84-202 352-483 (497)
237 2atv_A RERG, RAS-like estrogen 98.3 7.2E-07 2.4E-11 76.1 6.8 99 100-200 80-188 (196)
238 3izy_P Translation initiation 98.3 2.3E-08 8E-13 100.0 -3.0 134 100-234 56-211 (537)
239 3qq5_A Small GTP-binding prote 98.3 3.7E-07 1.3E-11 88.8 5.4 146 49-201 34-194 (423)
240 1zd9_A ADP-ribosylation factor 98.3 5.3E-07 1.8E-11 76.5 5.8 58 215-273 20-78 (188)
241 3j2k_7 ERF3, eukaryotic polype 98.3 3.5E-07 1.2E-11 89.2 5.2 58 216-273 16-106 (439)
242 2bcg_Y Protein YP2, GTP-bindin 98.3 6.7E-07 2.3E-11 76.8 6.4 58 216-274 7-69 (206)
243 1ky3_A GTP-binding protein YPT 98.3 3.7E-07 1.3E-11 76.0 4.6 56 217-273 8-69 (182)
244 3geh_A MNME, tRNA modification 98.3 2.4E-07 8.3E-12 91.0 3.8 99 100-201 276-382 (462)
245 2atv_A RERG, RAS-like estrogen 98.3 9.3E-07 3.2E-11 75.4 7.0 57 217-274 28-88 (196)
246 2fv8_A H6, RHO-related GTP-bin 98.3 2.3E-07 8E-12 80.1 3.2 100 100-200 77-197 (207)
247 3bc1_A RAS-related protein RAB 98.3 7.3E-07 2.5E-11 74.9 6.1 57 216-273 10-81 (195)
248 4gzl_A RAS-related C3 botulinu 98.3 7.2E-07 2.5E-11 77.0 6.1 57 216-274 29-90 (204)
249 2iwr_A Centaurin gamma 1; ANK 98.3 6.4E-07 2.2E-11 74.8 5.6 56 217-273 7-65 (178)
250 2yc2_C IFT27, small RAB-relate 98.3 2.9E-07 1E-11 78.6 3.5 58 216-273 19-84 (208)
251 2q3h_A RAS homolog gene family 98.3 7E-07 2.4E-11 76.3 5.9 57 216-274 19-80 (201)
252 3oes_A GTPase rhebl1; small GT 98.3 5.7E-07 1.9E-11 77.2 5.1 57 216-274 23-84 (201)
253 3cpj_B GTP-binding protein YPT 98.3 7.1E-07 2.4E-11 78.0 5.8 58 216-273 12-73 (223)
254 2gf0_A GTP-binding protein DI- 98.3 1.1E-06 3.9E-11 74.5 6.8 58 216-274 7-68 (199)
255 3iby_A Ferrous iron transport 98.3 2.8E-07 9.7E-12 83.5 3.2 80 119-200 82-164 (256)
256 1g7s_A Translation initiation 98.3 3.2E-07 1.1E-11 92.9 3.8 102 100-202 74-217 (594)
257 3q85_A GTP-binding protein REM 98.3 7.9E-07 2.7E-11 73.3 5.6 56 218-274 3-63 (169)
258 3cpj_B GTP-binding protein YPT 98.3 1.3E-07 4.3E-12 82.9 0.7 100 100-200 66-173 (223)
259 3q3j_B RHO-related GTP-binding 98.3 2.5E-07 8.6E-12 80.7 2.6 101 100-201 79-201 (214)
260 2iwr_A Centaurin gamma 1; ANK 98.3 1.8E-06 6.1E-11 72.0 7.6 95 100-200 58-166 (178)
261 2ew1_A RAS-related protein RAB 98.3 9.9E-07 3.4E-11 76.4 6.2 57 216-273 25-86 (201)
262 3l0i_B RAS-related protein RAB 98.3 3.6E-07 1.2E-11 78.3 3.2 57 216-273 32-93 (199)
263 3zvr_A Dynamin-1; hydrolase, D 98.3 1.5E-06 5E-11 90.1 8.2 63 182-246 18-80 (772)
264 2fv8_A H6, RHO-related GTP-bin 98.3 9.4E-07 3.2E-11 76.3 5.8 57 217-274 25-85 (207)
265 2j1l_A RHO-related GTP-binding 98.3 1.2E-06 4E-11 76.2 6.4 56 216-273 33-93 (214)
266 2cxx_A Probable GTP-binding pr 98.2 7E-06 2.4E-10 68.9 10.9 91 108-201 66-182 (190)
267 3c5c_A RAS-like protein 12; GD 98.2 9.4E-07 3.2E-11 75.1 5.5 58 216-275 20-82 (187)
268 2dy1_A Elongation factor G; tr 98.2 4.5E-06 1.5E-10 85.5 11.5 88 72-160 48-139 (665)
269 3dz8_A RAS-related protein RAB 98.2 2.9E-07 9.9E-12 78.3 2.2 58 216-273 22-83 (191)
270 3oes_A GTPase rhebl1; small GT 98.2 2E-07 7E-12 80.0 1.3 101 100-201 76-185 (201)
271 2fu5_C RAS-related protein RAB 98.2 2.8E-07 9.7E-12 77.3 2.1 56 217-273 8-68 (183)
272 1mh1_A RAC1; GTP-binding, GTPa 98.2 8.6E-07 2.9E-11 74.1 5.0 56 217-274 5-65 (186)
273 2gco_A H9, RHO-related GTP-bin 98.2 1.3E-06 4.4E-11 75.1 6.0 57 216-273 24-84 (201)
274 3l0i_B RAS-related protein RAB 98.2 5.4E-08 1.9E-12 83.5 -2.7 99 100-199 86-192 (199)
275 3reg_A RHO-like small GTPase; 98.2 1.2E-06 4.2E-11 74.4 5.7 56 216-273 22-82 (194)
276 2e87_A Hypothetical protein PH 98.2 6E-06 2.1E-10 78.0 11.0 85 118-202 244-335 (357)
277 3cbq_A GTP-binding protein REM 98.2 6.4E-07 2.2E-11 77.0 3.8 57 217-274 23-84 (195)
278 2hup_A RAS-related protein RAB 98.2 1.2E-06 4.1E-11 75.4 5.5 57 216-273 28-89 (201)
279 3izq_1 HBS1P, elongation facto 98.2 3.7E-07 1.3E-11 92.7 2.7 58 216-273 166-256 (611)
280 3p32_A Probable GTPase RV1496/ 98.2 1E-06 3.5E-11 83.4 5.6 85 116-202 188-283 (355)
281 2cjw_A GTP-binding protein GEM 98.2 7.2E-07 2.5E-11 76.5 4.1 57 217-273 6-67 (192)
282 2b6h_A ADP-ribosylation factor 98.2 8.1E-07 2.8E-11 75.9 4.3 57 216-274 28-85 (192)
283 1zo1_I IF2, translation initia 98.2 9.9E-08 3.4E-12 94.7 -1.9 99 100-199 55-163 (501)
284 1nrj_B SR-beta, signal recogni 98.2 5.2E-07 1.8E-11 78.2 2.9 55 217-275 12-68 (218)
285 3ihw_A Centg3; RAS, centaurin, 98.2 2.2E-06 7.4E-11 72.8 6.8 94 101-200 72-177 (184)
286 3p26_A Elongation factor 1 alp 98.2 5.4E-07 1.8E-11 88.8 3.3 58 217-274 33-123 (483)
287 3cbq_A GTP-binding protein REM 98.2 3.8E-06 1.3E-10 72.1 8.2 97 102-199 78-184 (195)
288 2qtf_A Protein HFLX, GTP-bindi 98.2 6.3E-06 2.2E-10 78.5 10.4 103 100-202 237-353 (364)
289 2wkq_A NPH1-1, RAS-related C3 98.2 6E-07 2E-11 82.6 3.1 100 100-200 207-327 (332)
290 3i8s_A Ferrous iron transport 98.2 6E-07 2.1E-11 81.9 3.1 82 118-201 83-167 (274)
291 3mca_A HBS1, elongation factor 98.2 2.8E-07 9.7E-12 93.2 0.9 58 216-273 176-266 (592)
292 2zej_A Dardarin, leucine-rich 98.2 1.5E-06 5.1E-11 73.5 5.2 56 218-273 3-67 (184)
293 3c5c_A RAS-like protein 12; GD 98.2 1.2E-06 4E-11 74.5 4.5 98 100-199 73-182 (187)
294 2f7s_A C25KG, RAS-related prot 98.2 7E-07 2.4E-11 77.3 2.9 27 215-241 23-49 (217)
295 3llu_A RAS-related GTP-binding 98.2 1.8E-06 6.2E-11 73.8 5.4 59 216-274 19-81 (196)
296 1m7b_A RND3/RHOE small GTP-bin 98.2 7E-07 2.4E-11 75.4 2.7 100 100-200 59-180 (184)
297 2g3y_A GTP-binding protein GEM 98.2 1.3E-06 4.5E-11 76.7 4.5 57 217-273 37-98 (211)
298 1m7b_A RND3/RHOE small GTP-bin 98.1 2.7E-06 9.2E-11 71.7 6.1 57 216-273 6-66 (184)
299 3lvq_E ARF-GAP with SH3 domain 98.1 1.3E-06 4.4E-11 86.0 4.6 55 216-274 321-378 (497)
300 2h5e_A Peptide chain release f 98.1 3.9E-06 1.3E-10 83.8 7.8 86 77-163 61-150 (529)
301 3c5h_A Glucocorticoid receptor 98.1 4.1E-06 1.4E-10 75.4 7.2 80 120-199 162-251 (255)
302 3bwd_D RAC-like GTP-binding pr 98.1 7.3E-07 2.5E-11 74.5 2.1 56 217-274 8-68 (182)
303 2atx_A Small GTP binding prote 98.1 2.6E-06 9E-11 72.2 5.6 56 217-274 18-78 (194)
304 2j0v_A RAC-like GTP-binding pr 98.1 2.8E-06 9.7E-11 73.2 5.9 57 216-274 8-69 (212)
305 1gwn_A RHO-related GTP-binding 98.1 8.9E-07 3.1E-11 76.8 2.6 100 100-200 80-201 (205)
306 3th5_A RAS-related C3 botulinu 97.4 3.5E-07 1.2E-11 78.6 0.0 56 217-274 30-90 (204)
307 1dar_A EF-G, elongation factor 98.1 7.8E-06 2.7E-10 84.1 10.0 87 74-161 53-143 (691)
308 3q5d_A Atlastin-1; G protein, 98.1 1E-06 3.5E-11 86.2 2.9 22 219-240 69-90 (447)
309 3t34_A Dynamin-related protein 98.1 3.7E-06 1.3E-10 79.4 6.4 24 219-242 36-59 (360)
310 3dpu_A RAB family protein; roc 98.1 1.4E-06 4.7E-11 86.9 3.5 99 100-201 102-206 (535)
311 3t5d_A Septin-7; GTP-binding p 98.1 7.9E-06 2.7E-10 74.2 8.2 80 121-200 116-201 (274)
312 2f9l_A RAB11B, member RAS onco 98.1 5.5E-06 1.9E-10 70.9 6.6 58 217-274 5-66 (199)
313 3ihw_A Centg3; RAS, centaurin, 98.1 4.6E-06 1.6E-10 70.8 5.8 56 216-273 19-78 (184)
314 3o47_A ADP-ribosylation factor 98.0 2.3E-06 8E-11 80.1 4.3 54 216-273 164-220 (329)
315 1udx_A The GTP-binding protein 98.0 2.4E-06 8.3E-11 82.8 4.4 55 219-274 159-217 (416)
316 3t1o_A Gliding protein MGLA; G 98.0 4.1E-06 1.4E-10 70.6 5.2 25 217-241 14-38 (198)
317 3r7w_A Gtpase1, GTP-binding pr 98.0 1.5E-05 5.1E-10 73.8 9.3 112 80-193 33-171 (307)
318 4dkx_A RAS-related protein RAB 98.0 3.9E-06 1.3E-10 74.0 5.1 98 101-199 67-172 (216)
319 3izy_P Translation initiation 98.0 4.9E-07 1.7E-11 90.4 -1.0 57 216-273 3-63 (537)
320 1gwn_A RHO-related GTP-binding 98.0 7.1E-06 2.4E-10 71.1 6.5 56 217-273 28-87 (205)
321 2rdo_7 EF-G, elongation factor 98.0 2.8E-05 9.4E-10 80.2 11.7 89 72-161 49-148 (704)
322 1oix_A RAS-related protein RAB 98.0 7.8E-06 2.7E-10 69.8 6.4 57 217-274 29-90 (191)
323 3q3j_B RHO-related GTP-binding 98.0 6.5E-06 2.2E-10 71.6 5.9 56 216-273 26-86 (214)
324 2qag_A Septin-2, protein NEDD5 98.0 3.3E-06 1.1E-10 80.2 4.2 58 216-273 36-106 (361)
325 2aka_B Dynamin-1; fusion prote 98.0 3.9E-06 1.3E-10 76.4 4.4 91 109-199 150-249 (299)
326 2wji_A Ferrous iron transport 98.0 1E-05 3.5E-10 67.1 6.5 79 119-199 80-161 (165)
327 2elf_A Protein translation elo 98.0 3.1E-06 1.1E-10 80.7 3.4 47 219-274 23-72 (370)
328 1yrb_A ATP(GTP)binding protein 98.0 1.6E-05 5.6E-10 70.8 7.8 102 100-202 113-256 (262)
329 1f60_A Elongation factor EEF1A 98.0 1.1E-06 3.9E-11 86.0 0.2 57 217-273 7-96 (458)
330 2wkq_A NPH1-1, RAS-related C3 97.9 8.7E-06 3E-10 74.8 6.0 56 217-274 155-215 (332)
331 1d2e_A Elongation factor TU (E 97.9 4.3E-06 1.5E-10 80.2 4.1 57 217-273 3-77 (397)
332 3dpu_A RAB family protein; roc 97.9 1.3E-05 4.5E-10 79.7 7.7 53 187-241 13-65 (535)
333 2zej_A Dardarin, leucine-rich 97.9 7.1E-06 2.4E-10 69.3 4.8 99 102-201 62-176 (184)
334 1wb1_A Translation elongation 97.9 2.7E-06 9.1E-11 84.0 2.3 57 217-273 19-84 (482)
335 1jwy_B Dynamin A GTPase domain 97.9 1.1E-05 3.7E-10 74.1 6.2 103 100-202 135-261 (315)
336 3a1s_A Iron(II) transport prot 97.9 1.6E-05 5.5E-10 71.9 7.1 81 119-201 82-165 (258)
337 1zun_B Sulfate adenylate trans 97.9 5.1E-06 1.7E-10 80.7 4.0 25 217-241 24-48 (434)
338 1zo1_I IF2, translation initia 97.9 1.8E-06 6E-11 85.7 0.8 58 216-274 3-63 (501)
339 2xex_A Elongation factor G; GT 97.9 2.2E-05 7.7E-10 80.7 8.9 85 77-162 54-142 (693)
340 3zvr_A Dynamin-1; hydrolase, D 97.9 9.8E-06 3.4E-10 84.0 5.7 90 110-199 176-274 (772)
341 1kk1_A EIF2gamma; initiation o 97.9 7.1E-06 2.4E-10 79.0 4.4 40 216-255 9-50 (410)
342 2c78_A Elongation factor TU-A; 97.9 3.8E-06 1.3E-10 80.7 2.5 58 217-274 11-87 (405)
343 1pui_A ENGB, probable GTP-bind 97.9 7E-05 2.4E-09 64.1 10.2 84 119-202 107-198 (210)
344 3tr5_A RF-3, peptide chain rel 97.9 2E-06 6.9E-11 85.9 0.2 58 218-275 14-95 (528)
345 3k53_A Ferrous iron transport 97.8 1.2E-05 4.2E-10 72.7 5.0 81 119-201 80-164 (271)
346 4fn5_A EF-G 1, elongation fact 97.8 3E-05 1E-09 79.9 8.4 91 71-162 51-152 (709)
347 3b1v_A Ferrous iron uptake tra 97.8 2.5E-06 8.6E-11 78.0 0.1 81 119-201 79-162 (272)
348 1jny_A EF-1-alpha, elongation 97.8 5.1E-06 1.7E-10 80.7 2.2 58 217-274 6-96 (435)
349 2qm8_A GTPase/ATPase; G protei 97.8 8.2E-06 2.8E-10 76.8 3.4 23 217-239 55-77 (337)
350 1s0u_A EIF-2-gamma, translatio 97.8 1.4E-05 4.7E-10 76.9 4.8 39 217-255 8-48 (408)
351 2p67_A LAO/AO transport system 97.8 2.9E-05 1E-09 73.0 6.7 96 100-201 153-259 (341)
352 4dkx_A RAS-related protein RAB 97.8 2.1E-05 7.3E-10 69.2 5.3 56 217-273 13-73 (216)
353 2g3y_A GTP-binding protein GEM 97.8 3.1E-05 1.1E-09 67.8 6.3 82 118-199 109-199 (211)
354 2p67_A LAO/AO transport system 97.7 1.5E-05 5.1E-10 75.0 3.8 23 217-239 56-78 (341)
355 1nrj_B SR-beta, signal recogni 97.7 1.1E-05 3.7E-10 69.7 2.6 89 100-189 59-170 (218)
356 3sjy_A Translation initiation 97.7 8.4E-06 2.9E-10 78.3 1.9 26 216-241 7-32 (403)
357 2j69_A Bacterial dynamin-like 97.7 7E-05 2.4E-09 77.1 8.7 101 100-200 178-322 (695)
358 3lxx_A GTPase IMAP family memb 97.7 8.9E-05 3E-09 65.4 8.0 100 100-200 82-211 (239)
359 2xex_A Elongation factor G; GT 97.7 1.2E-05 3.9E-10 82.9 2.5 59 217-275 10-88 (693)
360 2h5e_A Peptide chain release f 97.7 1.8E-05 6E-10 79.0 3.5 59 217-275 13-95 (529)
361 2xtp_A GTPase IMAP family memb 97.7 3.7E-05 1.3E-09 68.7 5.2 101 100-202 75-207 (260)
362 2wjg_A FEOB, ferrous iron tran 97.7 3.7E-05 1.2E-09 64.5 4.9 83 119-202 84-168 (188)
363 3p32_A Probable GTPase RV1496/ 97.7 2.2E-05 7.4E-10 74.2 3.9 22 217-238 79-100 (355)
364 1udx_A The GTP-binding protein 97.7 7.5E-05 2.6E-09 72.3 7.6 88 115-202 230-324 (416)
365 3sop_A Neuronal-specific septi 97.7 2.7E-05 9.4E-10 71.0 4.2 58 217-274 2-72 (270)
366 1r5b_A Eukaryotic peptide chai 97.6 1.1E-05 3.6E-10 79.3 1.2 58 217-274 43-133 (467)
367 2www_A Methylmalonic aciduria 97.6 0.00013 4.4E-09 68.8 8.2 84 116-201 183-277 (349)
368 2qag_B Septin-6, protein NEDD5 97.6 5.9E-05 2E-09 73.2 5.9 57 218-274 43-107 (427)
369 1g7s_A Translation initiation 97.6 1.6E-05 5.4E-10 80.4 1.8 56 217-274 5-82 (594)
370 2qnr_A Septin-2, protein NEDD5 97.6 3.5E-05 1.2E-09 71.3 3.9 58 216-273 17-87 (301)
371 1tq4_A IIGP1, interferon-induc 97.6 9.9E-05 3.4E-09 71.4 7.2 57 218-274 70-132 (413)
372 3lxw_A GTPase IMAP family memb 97.6 0.00017 6E-09 64.4 8.0 102 100-202 74-207 (247)
373 2cjw_A GTP-binding protein GEM 97.5 0.00021 7.1E-09 60.9 7.2 83 117-199 77-168 (192)
374 2wsm_A Hydrogenase expression/ 97.5 9.7E-05 3.3E-09 63.9 5.1 80 120-201 129-212 (221)
375 1wxq_A GTP-binding protein; st 97.5 3.7E-05 1.3E-09 74.0 2.4 48 147-194 214-261 (397)
376 1dar_A EF-G, elongation factor 97.4 5.8E-05 2E-09 77.6 3.4 58 217-274 12-89 (691)
377 3avx_A Elongation factor TS, e 97.4 5.4E-05 1.8E-09 81.5 3.0 58 216-273 295-370 (1289)
378 2qag_C Septin-7; cell cycle, c 97.4 5.4E-05 1.9E-09 73.4 2.7 60 215-274 29-100 (418)
379 1n0u_A EF-2, elongation factor 97.4 7E-05 2.4E-09 78.7 3.3 24 218-241 20-43 (842)
380 3cb4_D GTP-binding protein LEP 97.4 6.7E-05 2.3E-09 75.9 2.8 58 218-275 5-84 (599)
381 2wsm_A Hydrogenase expression/ 97.4 1.9E-05 6.6E-10 68.4 -1.1 24 217-240 30-53 (221)
382 2x2e_A Dynamin-1; nitration, h 97.3 7.3E-05 2.5E-09 70.4 2.8 91 109-199 155-254 (353)
383 3c5h_A Glucocorticoid receptor 97.3 0.00016 5.6E-09 64.8 4.9 25 216-240 18-51 (255)
384 1n0u_A EF-2, elongation factor 97.3 0.00011 3.6E-09 77.3 4.2 88 72-160 56-163 (842)
385 2qag_A Septin-2, protein NEDD5 97.3 0.00023 7.9E-09 67.4 5.8 80 122-201 147-232 (361)
386 2f9l_A RAB11B, member RAS onco 97.3 0.00022 7.5E-09 60.7 4.7 99 102-201 60-166 (199)
387 2rdo_7 EF-G, elongation factor 97.3 0.00019 6.4E-09 74.0 4.9 58 217-274 10-94 (704)
388 2ywe_A GTP-binding protein LEP 97.2 7.3E-05 2.5E-09 75.6 1.4 59 217-275 6-86 (600)
389 3r7w_B Gtpase2, GTP-binding pr 97.2 0.00026 9E-09 66.4 4.8 57 219-275 1-59 (331)
390 3ney_A 55 kDa erythrocyte memb 97.1 3.1E-05 1.1E-09 67.5 -2.1 55 219-273 21-77 (197)
391 2j37_W Signal recognition part 97.1 0.00023 7.7E-09 70.6 3.5 23 216-238 100-122 (504)
392 2qpt_A EH domain-containing pr 97.1 0.00066 2.3E-08 67.9 6.3 73 100-172 158-243 (550)
393 1yrb_A ATP(GTP)binding protein 97.0 8.4E-05 2.9E-09 66.1 -0.4 34 217-250 14-52 (262)
394 3t34_A Dynamin-related protein 97.0 0.00024 8.2E-09 66.9 2.3 87 111-197 163-255 (360)
395 2hf9_A Probable hydrogenase ni 96.9 0.0017 5.7E-08 56.1 6.8 78 121-200 140-221 (226)
396 1ko7_A HPR kinase/phosphatase; 96.9 0.0014 4.7E-08 61.1 6.3 96 140-241 72-168 (314)
397 2hf9_A Probable hydrogenase ni 96.8 0.0001 3.4E-09 64.0 -1.7 24 217-240 38-61 (226)
398 3l82_B F-box only protein 4; T 96.8 0.0021 7.2E-08 56.8 6.5 131 66-197 70-217 (227)
399 2dy1_A Elongation factor G; tr 96.8 0.00087 3E-08 68.5 4.5 58 217-274 9-86 (665)
400 2ged_A SR-beta, signal recogni 96.7 0.00032 1.1E-08 58.9 0.9 57 114-170 112-179 (193)
401 2qm8_A GTPase/ATPase; G protei 96.7 0.0018 6.1E-08 60.7 6.1 82 117-202 165-260 (337)
402 1cip_A Protein (guanine nucleo 96.7 0.00043 1.5E-08 65.5 1.6 98 102-200 199-341 (353)
403 3r7w_B Gtpase2, GTP-binding pr 96.7 0.0023 8E-08 60.0 6.3 79 115-194 67-165 (331)
404 4ido_A Atlastin-1; GTPase, GTP 96.6 0.0028 9.7E-08 61.8 6.5 60 219-278 69-156 (457)
405 1zcb_A G alpha I/13; GTP-bindi 96.6 0.00077 2.6E-08 64.0 2.2 99 101-200 206-350 (362)
406 1kgd_A CASK, peripheral plasma 96.5 0.00071 2.4E-08 57.2 1.4 37 219-255 7-44 (180)
407 2v3c_C SRP54, signal recogniti 96.4 0.0009 3.1E-08 65.0 1.9 23 217-239 99-121 (432)
408 2qnr_A Septin-2, protein NEDD5 96.3 0.0044 1.5E-07 57.0 5.9 77 121-198 127-209 (301)
409 1oix_A RAS-related protein RAB 96.1 0.0081 2.8E-07 50.7 6.2 84 116-199 97-188 (191)
410 2qag_C Septin-7; cell cycle, c 96.1 0.0054 1.8E-07 59.3 5.6 76 121-196 139-220 (418)
411 1ex7_A Guanylate kinase; subst 96.0 0.00083 2.8E-08 57.9 -0.7 36 220-255 4-40 (186)
412 3l2o_B F-box only protein 4; s 96.0 0.0057 2E-07 56.4 4.7 132 66-198 155-303 (312)
413 3vqt_A RF-3, peptide chain rel 95.9 0.0074 2.5E-07 60.3 5.5 58 219-276 33-114 (548)
414 3szr_A Interferon-induced GTP- 95.7 0.0095 3.2E-07 60.2 5.6 23 219-241 47-69 (608)
415 1h65_A Chloroplast outer envel 95.7 0.024 8.2E-07 50.7 7.4 64 100-163 91-170 (270)
416 3ohm_A Guanine nucleotide-bind 95.5 0.0047 1.6E-07 57.8 2.2 96 103-199 174-314 (327)
417 1ye8_A Protein THEP1, hypothet 95.4 0.0049 1.7E-07 52.3 1.8 23 219-241 2-24 (178)
418 2qor_A Guanylate kinase; phosp 95.4 0.0033 1.1E-07 53.9 0.7 24 218-241 13-36 (204)
419 3dm5_A SRP54, signal recogniti 95.4 0.028 9.5E-07 54.7 7.3 23 216-238 99-121 (443)
420 3tau_A Guanylate kinase, GMP k 95.4 0.0059 2E-07 52.7 2.2 23 219-241 10-32 (208)
421 3c8u_A Fructokinase; YP_612366 95.4 0.011 3.6E-07 50.9 3.8 24 217-240 22-45 (208)
422 2xtz_A Guanine nucleotide-bind 95.3 0.0038 1.3E-07 59.0 0.9 96 103-199 190-341 (354)
423 1lvg_A Guanylate kinase, GMP k 95.3 0.0051 1.7E-07 52.8 1.6 22 219-240 6-27 (198)
424 3j25_A Tetracycline resistance 95.2 0.0042 1.4E-07 63.2 0.6 57 219-275 4-80 (638)
425 4fid_A G protein alpha subunit 95.1 0.015 5.2E-07 54.6 4.3 59 102-161 167-242 (340)
426 2dby_A GTP-binding protein; GD 95.1 0.022 7.6E-07 54.0 5.3 49 147-195 201-254 (368)
427 1azs_C GS-alpha; complex (lyas 95.0 0.0094 3.2E-07 57.3 2.6 57 103-160 224-297 (402)
428 1zp6_A Hypothetical protein AT 95.0 0.011 3.7E-07 49.6 2.6 23 218-240 10-32 (191)
429 1s96_A Guanylate kinase, GMP k 95.0 0.0074 2.5E-07 53.0 1.5 23 219-241 18-40 (219)
430 1znw_A Guanylate kinase, GMP k 94.9 0.0079 2.7E-07 51.7 1.6 23 219-241 22-44 (207)
431 3tr0_A Guanylate kinase, GMP k 94.8 0.0088 3E-07 50.6 1.6 22 219-240 9-30 (205)
432 1z6g_A Guanylate kinase; struc 94.7 0.0095 3.2E-07 51.9 1.6 23 219-241 25-47 (218)
433 3a00_A Guanylate kinase, GMP k 94.7 0.0099 3.4E-07 50.1 1.6 21 220-240 4-24 (186)
434 3def_A T7I23.11 protein; chlor 94.5 0.06 2.1E-06 47.9 6.5 63 100-162 88-166 (262)
435 3tif_A Uncharacterized ABC tra 94.4 0.014 4.9E-07 51.6 1.9 23 219-241 33-55 (235)
436 2pcj_A ABC transporter, lipopr 94.3 0.014 4.9E-07 51.2 1.9 23 219-241 32-54 (224)
437 3asz_A Uridine kinase; cytidin 94.3 0.017 5.7E-07 49.3 2.2 24 217-240 6-29 (211)
438 2j37_W Signal recognition part 94.3 0.034 1.1E-06 55.0 4.6 76 120-200 213-310 (504)
439 4gp7_A Metallophosphoesterase; 94.3 0.015 5.2E-07 48.5 1.8 20 219-238 11-30 (171)
440 4fn5_A EF-G 1, elongation fact 94.3 0.034 1.1E-06 57.1 4.7 57 219-275 15-98 (709)
441 2j41_A Guanylate kinase; GMP, 94.2 0.018 6.1E-07 48.7 2.1 24 218-241 7-30 (207)
442 3lnc_A Guanylate kinase, GMP k 94.2 0.014 4.9E-07 50.8 1.5 22 219-240 29-51 (231)
443 1np6_A Molybdopterin-guanine d 94.1 0.016 5.3E-07 49.1 1.6 22 219-240 8-29 (174)
444 2cbz_A Multidrug resistance-as 94.1 0.019 6.6E-07 50.8 2.1 23 219-241 33-55 (237)
445 2bdt_A BH3686; alpha-beta prot 94.0 0.017 5.9E-07 48.4 1.6 21 219-239 4-24 (189)
446 1mv5_A LMRA, multidrug resista 94.0 0.02 6.9E-07 50.8 2.1 23 219-241 30-52 (243)
447 2v9p_A Replication protein E1; 94.0 0.018 6.1E-07 53.3 1.8 22 219-240 128-149 (305)
448 1g6h_A High-affinity branched- 93.9 0.019 6.6E-07 51.4 1.9 23 219-241 35-57 (257)
449 1kag_A SKI, shikimate kinase I 93.9 0.018 6.2E-07 47.4 1.6 22 219-240 6-27 (173)
450 1b0u_A Histidine permease; ABC 93.9 0.02 6.7E-07 51.6 1.9 23 219-241 34-56 (262)
451 2onk_A Molybdate/tungstate ABC 93.9 0.02 6.7E-07 51.0 1.9 23 219-241 26-48 (240)
452 3b85_A Phosphate starvation-in 93.9 0.024 8E-07 49.3 2.4 28 219-247 24-51 (208)
453 2ff7_A Alpha-hemolysin translo 93.9 0.021 7.3E-07 50.9 2.1 23 219-241 37-59 (247)
454 4g1u_C Hemin import ATP-bindin 93.8 0.021 7.2E-07 51.6 1.9 23 219-241 39-61 (266)
455 2pze_A Cystic fibrosis transme 93.8 0.023 7.9E-07 50.0 2.1 23 219-241 36-58 (229)
456 1sgw_A Putative ABC transporte 93.8 0.022 7.4E-07 49.9 1.9 23 219-241 37-59 (214)
457 3gfo_A Cobalt import ATP-bindi 93.8 0.022 7.4E-07 51.8 1.9 23 219-241 36-58 (275)
458 4eun_A Thermoresistant glucoki 93.7 0.024 8.1E-07 48.3 2.0 21 219-239 31-51 (200)
459 1ly1_A Polynucleotide kinase; 93.7 0.028 9.6E-07 46.2 2.3 22 218-239 3-24 (181)
460 1ji0_A ABC transporter; ATP bi 93.7 0.023 8E-07 50.3 1.9 23 219-241 34-56 (240)
461 2ghi_A Transport protein; mult 93.7 0.025 8.5E-07 50.8 2.1 23 219-241 48-70 (260)
462 2olj_A Amino acid ABC transpor 93.7 0.023 8E-07 51.2 1.9 23 219-241 52-74 (263)
463 2d2e_A SUFC protein; ABC-ATPas 93.6 0.023 8E-07 50.6 1.9 22 219-240 31-52 (250)
464 2bbw_A Adenylate kinase 4, AK4 93.6 0.027 9.1E-07 49.6 2.2 21 218-238 28-48 (246)
465 2qi9_C Vitamin B12 import ATP- 93.6 0.027 9.1E-07 50.4 2.1 23 219-241 28-50 (249)
466 2ixe_A Antigen peptide transpo 93.6 0.027 9.1E-07 51.0 2.1 23 219-241 47-69 (271)
467 2i3b_A HCR-ntpase, human cance 93.6 0.022 7.4E-07 48.8 1.5 22 219-240 3-24 (189)
468 1vpl_A ABC transporter, ATP-bi 93.5 0.025 8.6E-07 50.8 1.9 23 219-241 43-65 (256)
469 2zu0_C Probable ATP-dependent 93.5 0.025 8.6E-07 51.0 1.9 22 219-240 48-69 (267)
470 2eyu_A Twitching motility prot 93.5 0.024 8.1E-07 51.0 1.7 22 219-240 27-48 (261)
471 2ihy_A ABC transporter, ATP-bi 93.4 0.028 9.7E-07 51.1 2.1 23 219-241 49-71 (279)
472 2f1r_A Molybdopterin-guanine d 93.4 0.013 4.5E-07 49.5 -0.2 22 219-240 4-25 (171)
473 1cke_A CK, MSSA, protein (cyti 93.4 0.028 9.7E-07 48.3 1.9 23 218-240 6-28 (227)
474 3nh6_A ATP-binding cassette SU 93.3 0.019 6.6E-07 53.0 0.8 23 219-241 82-104 (306)
475 3lw7_A Adenylate kinase relate 93.3 0.028 9.7E-07 45.6 1.8 19 219-237 3-21 (179)
476 2nq2_C Hypothetical ABC transp 93.3 0.028 9.6E-07 50.3 1.8 23 219-241 33-55 (253)
477 2yz2_A Putative ABC transporte 93.3 0.031 1.1E-06 50.4 2.1 23 219-241 35-57 (266)
478 3uie_A Adenylyl-sulfate kinase 93.3 0.034 1.2E-06 47.3 2.3 23 218-240 26-48 (200)
479 2rhm_A Putative kinase; P-loop 93.3 0.037 1.3E-06 46.2 2.4 23 217-239 5-27 (193)
480 3kb2_A SPBC2 prophage-derived 93.2 0.032 1.1E-06 45.5 2.0 22 219-240 3-24 (173)
481 1knq_A Gluconate kinase; ALFA/ 93.2 0.037 1.3E-06 45.7 2.2 22 218-239 9-30 (175)
482 2if2_A Dephospho-COA kinase; a 93.1 0.032 1.1E-06 47.3 1.8 21 219-239 3-23 (204)
483 1htw_A HI0065; nucleotide-bind 93.1 0.031 1.1E-06 46.4 1.6 23 219-241 35-57 (158)
484 3ec2_A DNA replication protein 93.0 0.049 1.7E-06 45.2 2.8 22 219-240 40-61 (180)
485 1jal_A YCHF protein; nucleotid 93.0 0.075 2.5E-06 50.3 4.3 44 147-190 199-244 (363)
486 1qhx_A CPT, protein (chloramph 93.0 0.041 1.4E-06 45.4 2.2 22 219-240 5-26 (178)
487 4a9a_A Ribosome-interacting GT 92.9 0.071 2.4E-06 50.7 4.1 81 79-159 100-194 (376)
488 2jaq_A Deoxyguanosine kinase; 92.9 0.036 1.2E-06 46.6 1.8 21 219-239 2-22 (205)
489 1jjv_A Dephospho-COA kinase; P 92.9 0.043 1.5E-06 46.6 2.3 22 218-239 3-24 (206)
490 2pjz_A Hypothetical protein ST 92.9 0.038 1.3E-06 49.8 2.1 23 219-241 32-54 (263)
491 2qag_B Septin-6, protein NEDD5 92.9 0.06 2E-06 52.1 3.5 62 123-184 151-217 (427)
492 3aez_A Pantothenate kinase; tr 92.9 0.04 1.4E-06 50.9 2.3 25 216-240 89-113 (312)
493 2qt1_A Nicotinamide riboside k 92.9 0.048 1.7E-06 46.4 2.6 24 217-240 21-44 (207)
494 1odf_A YGR205W, hypothetical 3 92.9 0.078 2.7E-06 48.4 4.1 25 216-240 30-54 (290)
495 4a74_A DNA repair and recombin 92.8 0.034 1.2E-06 47.6 1.6 21 219-239 27-47 (231)
496 3t61_A Gluconokinase; PSI-biol 92.8 0.033 1.1E-06 47.2 1.5 23 218-240 19-41 (202)
497 3tui_C Methionine import ATP-b 92.8 0.036 1.2E-06 52.5 1.9 23 219-241 56-78 (366)
498 3cm0_A Adenylate kinase; ATP-b 92.7 0.045 1.5E-06 45.5 2.2 23 217-239 4-26 (186)
499 2bbs_A Cystic fibrosis transme 92.7 0.042 1.4E-06 50.3 2.1 23 219-241 66-88 (290)
500 1kht_A Adenylate kinase; phosp 92.7 0.044 1.5E-06 45.4 2.1 22 218-239 4-25 (192)
No 1
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=100.00 E-value=1e-41 Score=316.71 Aligned_cols=214 Identities=38% Similarity=0.708 Sum_probs=175.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHhcCceE
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKV 179 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~v 179 (316)
||||||||.++.+++.+.++++|+|++|+|+|+|.+.+++.+.+++.++|.++|+||+||++....+.|.+++.+.|+++
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~ 82 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRS 82 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCE
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHHCCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcE
Confidence 89999999999999999999999999999999999999999999999999999999999999877888999998778889
Q ss_pred EEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEE
Q 021210 180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR 259 (316)
Q Consensus 180 i~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~ 259 (316)
+++||+++.|+++|.+.+.++..........++..+.+++++++|+||||||||||+|.+.+.+.+++.||||++.+++.
T Consensus 83 i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~ 162 (282)
T 1puj_A 83 LSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK 162 (282)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEE
T ss_pred EEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEE
Confidence 99999999999999988877655433222334445567899999999999999999999999899999999999998888
Q ss_pred eCCcEEEEeCCCcccCCCCCHHHHHHHHhcccccccCcchHHHHHHHHHHHHcC
Q 021210 260 FGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARI 313 (316)
Q Consensus 260 ~~~~~~liDTPGi~~~~~~~~~~~~~La~~~~i~~~~~~~~~v~~~ll~~L~~~ 313 (316)
++.++.|+||||+..+...+.+.+.++++++++.+..++.++++.++++.|+++
T Consensus 163 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~ 216 (282)
T 1puj_A 163 VGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEH 216 (282)
T ss_dssp ETTTEEEEECCCCCCSCCCCHHHHHHHHHHTSSCTTSSCHHHHHHHHHHHHHHH
T ss_pred eCCCEEEEECcCcCCCCCCCHHHHHHHHHhCCcchhhCCHHHHHHHHHHHHHHh
Confidence 888999999999999888888889999999999999999999999999998753
No 2
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=100.00 E-value=7.3e-36 Score=274.54 Aligned_cols=165 Identities=36% Similarity=0.687 Sum_probs=129.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHhcCceE
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKV 179 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~v 179 (316)
+|||||||.++.+++.+.++++|+|++|+|+|+|.+.+++.+. ++ ++|.++|+||+||++....+.|.+++++.|+++
T Consensus 1 ~~w~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v 78 (262)
T 3cnl_A 1 MSWYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV 78 (262)
T ss_dssp --------CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE
T ss_pred CCCCchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE
Confidence 3899999999999999999999999999999999999887777 66 999999999999999877888999998888888
Q ss_pred EEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEE
Q 021210 180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR 259 (316)
Q Consensus 180 i~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~ 259 (316)
++||+++.|+++|.+.+.... .+++++|.||||||||+|+|.+...+.+++.||+|+..+++.
T Consensus 79 -~iSa~~~~gi~~L~~~l~~~~----------------~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~ 141 (262)
T 3cnl_A 79 -ITTHKGEPRKVLLKKLSFDRL----------------ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS 141 (262)
T ss_dssp -EECCTTSCHHHHHHHHCCCTT----------------CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEE
T ss_pred -EEECCCCcCHHHHHHHHHHhh----------------hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEE
Confidence 999999999888766543221 469999999999999999999998888999999999998888
Q ss_pred eCCcEEEEeCCCcccCCC-CCHHHH
Q 021210 260 FGKDLEFLDSPGIIPMRI-SDQAAA 283 (316)
Q Consensus 260 ~~~~~~liDTPGi~~~~~-~~~~~~ 283 (316)
++.++.|+||||+..+.+ .+.+.+
T Consensus 142 ~~~~~~l~DtpG~~~~~~~~~~~~~ 166 (262)
T 3cnl_A 142 LENGVKILDTPGILYKNIFSEDLAA 166 (262)
T ss_dssp CTTSCEEESSCEECCCCCCSHHHHH
T ss_pred eCCCEEEEECCCcccCcCCCChhhc
Confidence 888899999999998877 555444
No 3
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.92 E-value=6e-25 Score=211.03 Aligned_cols=154 Identities=21% Similarity=0.280 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChH----hHHHHHHH-HHhcCc---eE
Q 021210 108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA----DRNAWATY-FAKQGT---KV 179 (316)
Q Consensus 108 ~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~----~~~~~~~~-~~~~g~---~v 179 (316)
.++.+.+.+....+|++++|+|++++.....+.+.+++.++|+++|+||+||++.. ...+|... +++.|. ++
T Consensus 59 e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v 138 (369)
T 3ec1_A 59 DDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDV 138 (369)
T ss_dssp CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEE
T ss_pred HHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccE
Confidence 45666666777899999999999999888888899998899999999999998753 34556543 556665 78
Q ss_pred EEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcC-----cccccCCCCCceee
Q 021210 180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR-----RMCPAAPRPGVTRV 254 (316)
Q Consensus 180 i~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~-----~~~~vs~~pgtT~~ 254 (316)
+++||++|.|+++|.+.+.++... .+++++|.||||||||+|+|++. ....+++.||||++
T Consensus 139 ~~iSA~~g~gi~~L~~~I~~~~~~--------------~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~ 204 (369)
T 3ec1_A 139 CLVSAAKGIGMAKVMEAINRYREG--------------GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD 204 (369)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHTT--------------SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE
T ss_pred EEEECCCCCCHHHHHHHHHhhccc--------------CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe
Confidence 999999999999999887765421 25899999999999999999987 56788999999999
Q ss_pred EEEEEeCCcEEEEeCCCcccC
Q 021210 255 LKWVRFGKDLEFLDSPGIIPM 275 (316)
Q Consensus 255 ~~~~~~~~~~~liDTPGi~~~ 275 (316)
...+.++.++.++||||+...
T Consensus 205 ~~~~~~~~~~~liDtPG~~~~ 225 (369)
T 3ec1_A 205 MIEIPLESGATLYDTPGIINH 225 (369)
T ss_dssp EEEEECSTTCEEEECCSCCCC
T ss_pred eEEEEeCCCeEEEeCCCcCcH
Confidence 988888888999999999854
No 4
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.91 E-value=1.5e-24 Score=208.22 Aligned_cols=155 Identities=26% Similarity=0.361 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChH----hHHHHHHH-HHhcCc---eE
Q 021210 108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA----DRNAWATY-FAKQGT---KV 179 (316)
Q Consensus 108 ~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~----~~~~~~~~-~~~~g~---~v 179 (316)
.++.+.+.+..+.+|++++|+|++++.....+.+.+++.++|+++|+||+||.+.. +..+|... +++.|+ ++
T Consensus 57 e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v 136 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDV 136 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEE
T ss_pred HHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccE
Confidence 45666666677788899999999988777777888888899999999999998654 35556543 455676 78
Q ss_pred EEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCc------ccccCCCCCcee
Q 021210 180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR------MCPAAPRPGVTR 253 (316)
Q Consensus 180 i~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~------~~~vs~~pgtT~ 253 (316)
+++||++|.|+++|.+.+.++... .+++++|.||||||||+|+|++.. ...++..||||+
T Consensus 137 ~~iSA~~g~gi~~L~~~l~~~~~~--------------~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~ 202 (368)
T 3h2y_A 137 FLISAAKGQGIAELADAIEYYRGG--------------KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTL 202 (368)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHTT--------------SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----
T ss_pred EEEeCCCCcCHHHHHhhhhhhccc--------------ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeec
Confidence 999999999999998887765321 358999999999999999999853 456899999999
Q ss_pred eEEEEEeCCcEEEEeCCCcccCC
Q 021210 254 VLKWVRFGKDLEFLDSPGIIPMR 276 (316)
Q Consensus 254 ~~~~~~~~~~~~liDTPGi~~~~ 276 (316)
+...+.++.++.++||||+....
T Consensus 203 ~~~~~~~~~~~~liDtPG~~~~~ 225 (368)
T 3h2y_A 203 DLIDIPLDEESSLYDTPGIINHH 225 (368)
T ss_dssp CEEEEESSSSCEEEECCCBCCTT
T ss_pred ceEEEEecCCeEEEeCCCcCcHH
Confidence 99988888789999999998653
No 5
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.88 E-value=2e-22 Score=197.26 Aligned_cols=165 Identities=23% Similarity=0.328 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHHHHHhcCc-eEEEecc
Q 021210 108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGT-KVIFSNG 184 (316)
Q Consensus 108 ~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~-~vi~iSa 184 (316)
.++.++....+++||++|+|+|++.+.+..+..+..++. ++|+++|+||+|+....+...+.+ +.++|. +++++||
T Consensus 69 ~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~-~~~lg~~~~~~iSA 147 (439)
T 1mky_A 69 QKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPE-LYSLGFGEPIPVSA 147 (439)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHH-HGGGSSCSCEECBT
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHH-HHhcCCCCEEEEec
Confidence 345666778899999999999999988877777777765 789999999999854311111123 445665 6899999
Q ss_pred ccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEe-C
Q 021210 185 QLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-G 261 (316)
Q Consensus 185 ~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~-~ 261 (316)
++|.|+++|.+.+............+.......++++++|.||||||||+|+|++.....+++.||||++.. .+.. +
T Consensus 148 ~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g 227 (439)
T 1mky_A 148 EHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG 227 (439)
T ss_dssp TTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT
T ss_pred cCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC
Confidence 999999999887755433211000010012346899999999999999999999998888999999999853 2333 5
Q ss_pred CcEEEEeCCCcc
Q 021210 262 KDLEFLDSPGII 273 (316)
Q Consensus 262 ~~~~liDTPGi~ 273 (316)
..+.++||||+.
T Consensus 228 ~~~~l~Dt~G~~ 239 (439)
T 1mky_A 228 RKYVFVDTAGLR 239 (439)
T ss_dssp EEEEESSCSCC-
T ss_pred EEEEEEECCCCc
Confidence 568899999985
No 6
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.87 E-value=1e-22 Score=199.24 Aligned_cols=168 Identities=20% Similarity=0.240 Sum_probs=113.9
Q ss_pred cccccchH-------HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHH
Q 021210 100 VQWYPGHI-------AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~-------~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~ 170 (316)
+-++||+. .++.++....+++||++|+|+|++++.+..+..+.+++. ++|+++|+||+|+.+... +..+
T Consensus 55 l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~--~~~~ 132 (436)
T 2hjg_A 55 LIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA--NIYD 132 (436)
T ss_dssp EEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-------CCCS
T ss_pred EEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh--hHHH
Confidence 45567763 356666777899999999999999998877777877764 789999999999975421 1111
Q ss_pred HHHhcCc-eEEEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCC
Q 021210 171 YFAKQGT-KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP 249 (316)
Q Consensus 171 ~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p 249 (316)
+.++|. +++++||++|.|+.+|.+.+.+...... +.......++|+++|.||||||||+|+|++.....+++.|
T Consensus 133 -~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~----~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~ 207 (436)
T 2hjg_A 133 -FYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIP----ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVA 207 (436)
T ss_dssp -SGGGSSCCCEECBTTTTBTHHHHHHHHHHTGGGCC----SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---
T ss_pred -HHHcCCCCeEEEeCcCCCChHHHHHHHHHhcCccc----cccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCC
Confidence 234554 7899999999999999888766543211 1111234689999999999999999999999888899999
Q ss_pred CceeeEE--EEEe-CCcEEEEeCCCccc
Q 021210 250 GVTRVLK--WVRF-GKDLEFLDSPGIIP 274 (316)
Q Consensus 250 gtT~~~~--~~~~-~~~~~liDTPGi~~ 274 (316)
|||++.. .+.. +..+.|+||||+..
T Consensus 208 gtT~d~~~~~~~~~~~~~~l~DT~G~~~ 235 (436)
T 2hjg_A 208 GTTRDAVDTSFTYNQQEFVIVDTAGMRK 235 (436)
T ss_dssp ------CCEEEEETTEEEEETTHHHHTC
T ss_pred CceeeeeEEEEEECCeEEEEEECCCcCc
Confidence 9999863 2222 45799999999964
No 7
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.84 E-value=9.2e-21 Score=186.33 Aligned_cols=168 Identities=20% Similarity=0.259 Sum_probs=118.0
Q ss_pred cccccch-------HHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHH
Q 021210 100 VQWYPGH-------IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWAT 170 (316)
Q Consensus 100 i~~~Pgh-------~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~ 170 (316)
+-++||. ..++.+.....++.+|++|+|+|++.+.+..+..+.+++. ++|+++|+||+|+.+..+ .+.+
T Consensus 75 liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~--~~~e 152 (456)
T 4dcu_A 75 LIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA--NIYD 152 (456)
T ss_dssp EECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-----------CC
T ss_pred EEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhh--hHHH
Confidence 5677882 3667777778899999999999999988888888888876 789999999999875421 1222
Q ss_pred HHHhcC-ceEEEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCC
Q 021210 171 YFAKQG-TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP 249 (316)
Q Consensus 171 ~~~~~g-~~vi~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p 249 (316)
+..+| ..++++||++|.|+.+|.+.+........ .........+|+++|.+|||||||+|+|++.....+++.|
T Consensus 153 -~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~----~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~ 227 (456)
T 4dcu_A 153 -FYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIP----ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVA 227 (456)
T ss_dssp -SGGGSSSSEEECCTTTCTTHHHHHHHHHTTGGGSC----SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC--
T ss_pred -HHHcCCCceEEeecccccchHHHHHHHHhhccccc----ccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCC
Confidence 23344 35789999999999999887765433211 1112234689999999999999999999998888999999
Q ss_pred CceeeE--EEEEe-CCcEEEEeCCCccc
Q 021210 250 GVTRVL--KWVRF-GKDLEFLDSPGIIP 274 (316)
Q Consensus 250 gtT~~~--~~~~~-~~~~~liDTPGi~~ 274 (316)
|||++. ..+.. +..+.|+||||+..
T Consensus 228 gtt~~~~~~~~~~~~~~~~l~DT~G~~~ 255 (456)
T 4dcu_A 228 GTTRDAVDTSFTYNQQEFVIVDTAGMRK 255 (456)
T ss_dssp ----CTTSEEEEETTEEEEETTGGGTTT
T ss_pred CeEEEEEEEEEEECCceEEEEECCCCCc
Confidence 999985 23333 45789999999864
No 8
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.83 E-value=2.3e-21 Score=181.70 Aligned_cols=140 Identities=21% Similarity=0.250 Sum_probs=107.4
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCEEEEEEccCCCChHh----HHHHHHHHHhcCceEEEeccccc
Q 021210 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD----RNAWATYFAKQGTKVIFSNGQLG 187 (316)
Q Consensus 117 ~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~----~~~~~~~~~~~g~~vi~iSa~~g 187 (316)
.++++|++++|+|++.|....+ .+.+++ .+++.++|+||+||++..+ .++|.++|.+.|++++++|+.++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~ 161 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQ 161 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHH
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 5899999999999999988877 777776 4789999999999998744 67899999888999999999999
Q ss_pred cchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCC-------CceeeEEEEEe
Q 021210 188 MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKWVRF 260 (316)
Q Consensus 188 ~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p-------gtT~~~~~~~~ 260 (316)
.|+++|.+.. . .-.++++|.+|||||||+|+|.+.....++.++ +||+..+++..
T Consensus 162 ~g~~~L~~~~----~--------------G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~ 223 (307)
T 1t9h_A 162 DSLADIIPHF----Q--------------DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHT 223 (307)
T ss_dssp TTCTTTGGGG----T--------------TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEE
T ss_pred CCHHHHHhhc----C--------------CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhc
Confidence 9988876532 1 124899999999999999999987665665554 57877666666
Q ss_pred CCcEEEEeCCCcccCC
Q 021210 261 GKDLEFLDSPGIIPMR 276 (316)
Q Consensus 261 ~~~~~liDTPGi~~~~ 276 (316)
. ..+++||||+....
T Consensus 224 ~-~g~v~dtpg~~~~~ 238 (307)
T 1t9h_A 224 S-GGLVADTPGFSSLE 238 (307)
T ss_dssp T-TEEEESSCSCSSCC
T ss_pred C-CEEEecCCCccccc
Confidence 5 56899999998654
No 9
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.79 E-value=3.4e-19 Score=166.42 Aligned_cols=138 Identities=23% Similarity=0.354 Sum_probs=106.4
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCEEEEEEccCCCChHh---HHHHHHHHHhcCceEEEecccccc
Q 021210 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQLGM 188 (316)
Q Consensus 117 ~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~---~~~~~~~~~~~g~~vi~iSa~~g~ 188 (316)
.++++|++++|+|+++|..+.+ .+.+++ .+.|+++|+||+||.+..+ .+++.+++.+.|++++++||++|.
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~-~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~ 154 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNY-LLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGE 154 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred HHHhcCEEEEEEECCCCCCCHH-HHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 5899999999999998764433 344443 4789999999999997752 566777787788999999999999
Q ss_pred chhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCC-------CceeeEEEEEeC
Q 021210 189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKWVRFG 261 (316)
Q Consensus 189 gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p-------gtT~~~~~~~~~ 261 (316)
|+++|.+.+. . -.++++|.+|+|||||+|+|. .....++.+. +||+....+...
T Consensus 155 gi~~L~~~l~---G---------------~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~ 215 (302)
T 2yv5_A 155 GIDELVDYLE---G---------------FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFG 215 (302)
T ss_dssp THHHHHHHTT---T---------------CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEET
T ss_pred CHHHHHhhcc---C---------------cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcC
Confidence 9998876532 1 137999999999999999999 6655555544 377776666664
Q ss_pred CcEEEEeCCCccc
Q 021210 262 KDLEFLDSPGIIP 274 (316)
Q Consensus 262 ~~~~liDTPGi~~ 274 (316)
...+++||||+..
T Consensus 216 ~~g~v~d~pg~~~ 228 (302)
T 2yv5_A 216 KGSFVGDTPGFSK 228 (302)
T ss_dssp TTEEEESSCCCSS
T ss_pred CCcEEEECcCcCc
Confidence 5578999999974
No 10
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.78 E-value=4.5e-19 Score=169.27 Aligned_cols=144 Identities=23% Similarity=0.331 Sum_probs=109.4
Q ss_pred HHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCEEEEEEccCCCChHh---HHHHHHHHHhcCceEEEeccc
Q 021210 114 LKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQ 185 (316)
Q Consensus 114 l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~---~~~~~~~~~~~g~~vi~iSa~ 185 (316)
.+..++++|+|++| |++.|....+ .+.+++ .+++.++|+||+||++..+ .++|.++|.+.|++++++|+.
T Consensus 124 ~~~i~anvD~v~iv-~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~ 201 (358)
T 2rcn_A 124 VKPIAANIDQIVIV-SAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSH 201 (358)
T ss_dssp CEEEEECCCEEEEE-EESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTT
T ss_pred HHHHHhcCCEEEEE-EeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecC
Confidence 34457999999965 7788766655 577775 3788899999999998765 667889999999999999999
Q ss_pred cccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcc-cccCCCC---C----ceeeEEE
Q 021210 186 LGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRP---G----VTRVLKW 257 (316)
Q Consensus 186 ~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~-~~vs~~p---g----tT~~~~~ 257 (316)
++.|+++|...+ .. -.++++|.+|||||||+|+|.+... ..++.+. | +|+....
T Consensus 202 ~~~gl~~L~~~~---~G---------------~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i 263 (358)
T 2rcn_A 202 TQDGLKPLEEAL---TG---------------RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARL 263 (358)
T ss_dssp TTBTHHHHHHHH---TT---------------SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEE
T ss_pred CCcCHHHHHHhc---CC---------------CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEE
Confidence 999988876532 11 1489999999999999999998766 5555432 3 6676677
Q ss_pred EEeCCcEEEEeCCCcccCCC
Q 021210 258 VRFGKDLEFLDSPGIIPMRI 277 (316)
Q Consensus 258 ~~~~~~~~liDTPGi~~~~~ 277 (316)
..+..+..++||||+....+
T Consensus 264 ~~v~q~~~l~dtpgv~e~~l 283 (358)
T 2rcn_A 264 YHFPHGGDVIDSPGVREFGL 283 (358)
T ss_dssp EECTTSCEEEECHHHHTCCC
T ss_pred EEECCCCEecCcccHHHhhh
Confidence 77776778999999976543
No 11
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.73 E-value=8.8e-18 Score=156.69 Aligned_cols=140 Identities=21% Similarity=0.353 Sum_probs=100.5
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCEEEEEEccCCCChHh---HHHHHHHHHhcCceEEEecccccc
Q 021210 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQLGM 188 (316)
Q Consensus 117 ~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~---~~~~~~~~~~~g~~vi~iSa~~g~ 188 (316)
.++++|++|+|+|++++.+..+ .+..++ .+.|+++|+||+||.+..+ ..+|.+.+... ..++.+||++|.
T Consensus 81 ~~~~ad~vilV~D~~~~~~s~~-~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~~~~~~SAktg~ 158 (301)
T 1u0l_A 81 HVANVDQVILVVTVKMPETSTY-IIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL-YPIVKTSAKTGM 158 (301)
T ss_dssp TEESCCEEEEEECSSTTCCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-SCEEECCTTTCT
T ss_pred ccccCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-CcEEEEECCCCc
Confidence 5789999999999998764432 344443 4789999999999987654 34555555433 789999999999
Q ss_pred chhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCC-------CceeeEEEEEeC
Q 021210 189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKWVRFG 261 (316)
Q Consensus 189 gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p-------gtT~~~~~~~~~ 261 (316)
|++++...+. . -.++++|.+|+|||||+|+|.+.....++.+. ++|+....+...
T Consensus 159 gv~~lf~~l~---g---------------eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~ 220 (301)
T 1u0l_A 159 GIEELKEYLK---G---------------KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFD 220 (301)
T ss_dssp THHHHHHHHS---S---------------SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECT
T ss_pred CHHHHHHHhc---C---------------CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcC
Confidence 9998876532 1 13799999999999999999987655554433 366655555554
Q ss_pred CcEEEEeCCCcccCC
Q 021210 262 KDLEFLDSPGIIPMR 276 (316)
Q Consensus 262 ~~~~liDTPGi~~~~ 276 (316)
....++||||+....
T Consensus 221 ~~g~v~q~p~~~~~~ 235 (301)
T 1u0l_A 221 FGGYVVDTPGFANLE 235 (301)
T ss_dssp TSCEEESSCSSTTCC
T ss_pred CCCEEEECcCCCccC
Confidence 556899999987544
No 12
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.49 E-value=1.1e-15 Score=145.54 Aligned_cols=156 Identities=18% Similarity=0.146 Sum_probs=109.2
Q ss_pred cCeEEEEEeCCCCCCCCcHHHHHHh----CCCCEEEEEEccCCCChHhHHHHHHHHHh-c-CceEEEeccccccchhhhH
Q 021210 121 MDVVIEVRDARIPLSTTHPLMDQWL----GNRKRILVLNREDMISMADRNAWATYFAK-Q-GTKVIFSNGQLGMGTMKLS 194 (316)
Q Consensus 121 aDlIl~VvDar~~~~~~~~~i~~~l----~~k~~IlVlNK~DLv~~~~~~~~~~~~~~-~-g~~vi~iSa~~g~gi~~L~ 194 (316)
+|.+-.++|++.++...++++.+++ ..++.++++||+|+++....+.|.+++.. . +.....+++..+.+...+.
T Consensus 58 ~~~l~~i~~~~~~l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 137 (357)
T 2e87_A 58 RDNLRKVLERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQFYGRVA 137 (357)
T ss_dssp HHHHHHHHHHSCCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Confidence 3455566777777778888888776 67888899999999988888889888875 2 4333344455555555555
Q ss_pred HHHHHhhhhh-------hhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcE
Q 021210 195 RLAKALASDV-------NVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDL 264 (316)
Q Consensus 195 ~~L~~l~~~~-------~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~ 264 (316)
+.++.+.... ...++.++......+|+++|.+|||||||+|+|.+.. ..++..|++|++.....+ +..+
T Consensus 138 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~ 216 (357)
T 2e87_A 138 SVLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRY 216 (357)
T ss_dssp HHHHHTHHHHHHHHHHHHHGGGSCCCCSSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccCCCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCceE
Confidence 5544433221 1112222222456789999999999999999999876 567888999998765544 2358
Q ss_pred EEEeCCCcccCCC
Q 021210 265 EFLDSPGIIPMRI 277 (316)
Q Consensus 265 ~liDTPGi~~~~~ 277 (316)
.++||||+.....
T Consensus 217 ~l~Dt~G~~~~~~ 229 (357)
T 2e87_A 217 QIIDTPGLLDRPI 229 (357)
T ss_dssp EEEECTTTSSSCS
T ss_pred EEEeCCCccccch
Confidence 9999999976543
No 13
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.36 E-value=1.2e-14 Score=139.23 Aligned_cols=186 Identities=17% Similarity=0.116 Sum_probs=97.2
Q ss_pred CCCCCCCCcchhhhhhccccCCcceEEEeccccccccccchHHHHHHHHH--HHHhhcCeEEEEEeCCCCCCC-C-cHHH
Q 021210 66 NSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELK--DQLKLMDVVIEVRDARIPLST-T-HPLM 141 (316)
Q Consensus 66 ~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~i~~~Pgh~~~~~r~l~--~~i~~aDlIl~VvDar~~~~~-~-~~~i 141 (316)
..| ..+..|-++-+|.....+++.++|.+.+.+.| ....++.+. +.+++.|+||+|+|+|.+... . +..+
T Consensus 36 ~~~-~~~~~g~gk~~e~~~~~~~~~v~~~~~l~p~q-----~~~l~~~~~~~~v~dr~~lil~i~~~ra~t~~~~~q~~l 109 (364)
T 2qtf_A 36 SPN-VKFYIQYDKLQQIKNDEEISTLIIFEQLKPRH-----FINIRRELKGKEVLDKILLLLEIFALHAGSKEAKMQIEL 109 (364)
T ss_dssp SCB-TTTBSCHHHHHHHHTCTTCCEEEESSCCCHHH-----HHHHHHHHTTCEEECHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred CCC-CcceechhHHHHHhhccCCCEEEECCCCCHHH-----HHHHHHHhCCCceeehHhHHHHHHHhhCcccchhHHHHH
Confidence 444 45667888888877788999999999887765 344555555 578899999999999998654 2 4445
Q ss_pred HHHhCCCCEEEEEEccCCCChHhHHHHHHHHHhcC-ceEEE--eccccccchhhhHHHHHHhhhhhh-------hhhccc
Q 021210 142 DQWLGNRKRILVLNREDMISMADRNAWATYFAKQG-TKVIF--SNGQLGMGTMKLSRLAKALASDVN-------VKRRSK 211 (316)
Q Consensus 142 ~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g-~~vi~--iSa~~g~gi~~L~~~L~~l~~~~~-------~~r~~~ 211 (316)
..+...+|.+ ..|..+++..+ +.+-- -... ......+.+.+..+..... ..+..+
T Consensus 110 a~l~~~~~rl--------------~~~~~l~~~~~~i~~~g~ge~~~-e~~~~~~~~~i~~l~~~l~~~~~~r~~~r~~r 174 (364)
T 2qtf_A 110 ARLKYELPII--------------KETYTKSKIGEQQGPLGAGTYGV-ESTIKFYKRRINKLMKELESIKIFKEKSIESN 174 (364)
T ss_dssp HHHHHHHHHH--------------HHC----------------------CHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHhhhchhh--------------hhhhHHHHhcCCCCcCCcCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4443222211 12333222211 11000 0000 0001122222222222111 111111
Q ss_pred CCCccceE-EeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEe-CCcEEEEeCCCcccC
Q 021210 212 GLLPRAVR-AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRF-GKDLEFLDSPGIIPM 275 (316)
Q Consensus 212 ~~~~~~~~-i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~-~~~~~liDTPGi~~~ 275 (316)
...+++ |+++|++|||||||+|+|.+.. ..+++.+++|++. ..+.+ +..+.++||||+...
T Consensus 175 --~~~~~~~V~lvG~~naGKSTLln~L~~~~-~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~ 239 (364)
T 2qtf_A 175 --KRNNIPSIGIVGYTNSGKTSLFNSLTGLT-QKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRG 239 (364)
T ss_dssp ------CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSS
T ss_pred --hhcCCcEEEEECCCCCCHHHHHHHHHCCC-ccccCCcccccCCEEEEEEECCEEEEEEeCCCchhc
Confidence 112344 9999999999999999999876 4778899999885 33444 456889999998654
No 14
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.33 E-value=4.6e-12 Score=123.90 Aligned_cols=130 Identities=16% Similarity=0.167 Sum_probs=96.8
Q ss_pred CCCCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCC-------
Q 021210 65 GNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS------- 135 (316)
Q Consensus 65 ~~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~------- 135 (316)
+.++++...|....|++.++|+|..+.+|....+. +.++||| .++.+++...++.+|++|+|+|++.+..
T Consensus 62 ~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~~~iiDTPGh-~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~ 140 (439)
T 3j2k_7 62 ETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGH-KSFVPNMIGGASQADLAVLVISARKGEFETGFEKG 140 (439)
T ss_pred cchhhhhhhccchhHhhcCceEEEeEEEEecCCeEEEEEECCCh-HHHHHHHHhhHhhCCEEEEEEECCCCccccccCCC
Confidence 34577888999999999999999999988877655 7789999 7899999999999999999999998753
Q ss_pred ---CCcHHHHHHhCCCCEEEEEEccCCCCh----Hh----HHHHHHHHHhcC------ceEEEeccccccchhhhHH
Q 021210 136 ---TTHPLMDQWLGNRKRILVLNREDMISM----AD----RNAWATYFAKQG------TKVIFSNGQLGMGTMKLSR 195 (316)
Q Consensus 136 ---~~~~~i~~~l~~k~~IlVlNK~DLv~~----~~----~~~~~~~~~~~g------~~vi~iSa~~g~gi~~L~~ 195 (316)
.++..+...++.+++++|+||+|+.+. .. .++..+++.+.| ..++++||++|.|+.++.+
T Consensus 141 ~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 141 GQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred chHHHHHHHHHHcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 112222223333448999999999642 11 122333344444 3589999999999998443
No 15
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.28 E-value=2.4e-12 Score=123.61 Aligned_cols=58 Identities=38% Similarity=0.591 Sum_probs=49.4
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-CCcEEEEeCCCcccC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPM 275 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~~~~~liDTPGi~~~ 275 (316)
..+|++||+||||||||+|+|++.+ ..++++||||++... +.. +..+.|+||||+...
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~ 132 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDG 132 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCC
Confidence 4689999999999999999999876 688999999999643 233 567999999999854
No 16
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.25 E-value=1.3e-11 Score=121.98 Aligned_cols=127 Identities=17% Similarity=0.117 Sum_probs=80.0
Q ss_pred CCCCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC------
Q 021210 65 GNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST------ 136 (316)
Q Consensus 65 ~~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~------ 136 (316)
+.++++.+.|....|++.++|+|..+..|...... +-++||| .++.+++...++.+|++|+|+|++.+...
T Consensus 78 ~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDTPG~-~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~ 156 (483)
T 3p26_A 78 SSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGH-RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLD 156 (483)
T ss_dssp -----------------CCSSCCCCEEEEECSSCEEEEECCCCC-GGGHHHHHHHHTTCSEEEEEEECCC------CCCC
T ss_pred CcchhhhhhccchhHhhcCcceEeeeEEEecCCceEEEEECCCc-HHHHHHHHHhhhhCCEEEEEEECCCCccccccchh
Confidence 45677888999999999999999999999877655 7789999 77999999999999999999999986322
Q ss_pred ----CcHHHHHHhCCCCEEEEEEccCCCCh--HhHH----HHHHHHHhcC-----ceEEEeccccccchhh
Q 021210 137 ----THPLMDQWLGNRKRILVLNREDMISM--ADRN----AWATYFAKQG-----TKVIFSNGQLGMGTMK 192 (316)
Q Consensus 137 ----~~~~i~~~l~~k~~IlVlNK~DLv~~--~~~~----~~~~~~~~~g-----~~vi~iSa~~g~gi~~ 192 (316)
++..+...+..+++++|+||+|+.+. ...+ +..+++...| ..++++||++|.|+++
T Consensus 157 ~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 157 GQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred hhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 11122223445779999999999862 2222 2223333333 4689999999999974
No 17
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.24 E-value=1.1e-11 Score=120.84 Aligned_cols=134 Identities=14% Similarity=0.211 Sum_probs=94.5
Q ss_pred CCCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc---HH
Q 021210 66 NSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH---PL 140 (316)
Q Consensus 66 ~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~---~~ 140 (316)
.++.+.+.|+...|++.++|++..+.+|...... +-++||| .++.+.+...+..+|++|+|+|++++..... ..
T Consensus 72 ~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~~~~iiDtpGh-~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~ 150 (434)
T 1zun_B 72 DVDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGH-EQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSY 150 (434)
T ss_dssp C--CHHHHHHHHC-----CCCCCEEEEEECSSEEEEEEECCCS-GGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHH
T ss_pred chhhhhhhccChhHHHCCcEEEeeeeEeecCCceEEEEECCCh-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHH
Confidence 3455566889999999999999999988876554 7789999 6788888899999999999999998763322 22
Q ss_pred HHHHhCCCCEEEEEEccCCCCh--Hh----HHHHHHHHHhcC-----ceEEEeccccccchhh------------hHHHH
Q 021210 141 MDQWLGNRKRILVLNREDMISM--AD----RNAWATYFAKQG-----TKVIFSNGQLGMGTMK------------LSRLA 197 (316)
Q Consensus 141 i~~~l~~k~~IlVlNK~DLv~~--~~----~~~~~~~~~~~g-----~~vi~iSa~~g~gi~~------------L~~~L 197 (316)
+...++.+++++|+||+|+.+. +. .+++.+++.+.+ ..++++||++|.|+++ |.+++
T Consensus 151 ~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l 230 (434)
T 1zun_B 151 IASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEIL 230 (434)
T ss_dssp HHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHH
T ss_pred HHHHcCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccccCccccCchHHHHH
Confidence 2333344578999999999863 21 233444455556 5789999999999987 66666
Q ss_pred HHh
Q 021210 198 KAL 200 (316)
Q Consensus 198 ~~l 200 (316)
..+
T Consensus 231 ~~i 233 (434)
T 1zun_B 231 ETV 233 (434)
T ss_dssp HHS
T ss_pred hcC
Confidence 665
No 18
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.12 E-value=1.5e-10 Score=114.44 Aligned_cols=130 Identities=15% Similarity=0.119 Sum_probs=82.0
Q ss_pred CCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH--hC
Q 021210 71 NGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW--LG 146 (316)
Q Consensus 71 ~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~--l~ 146 (316)
...|....|++.++|+|..+..|...... +-++||| .++.+++...+..+|++|+|+|++++......+...+ ..
T Consensus 46 ~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh-~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~ 124 (482)
T 1wb1_A 46 SAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH-ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF 124 (482)
T ss_dssp ------------------CCCEEEETTEEEEECCCSSH-HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT
T ss_pred cccccccccccCccEEecceEEEEECCEEEEEEECCCh-HHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHc
Confidence 34666677888999999988877655443 7789999 7789999999999999999999998653322222222 13
Q ss_pred CCCEEEEEEccCCCChHhHH----HHHHHHHhc----CceEEEeccccccchhhhHHHHHHhh
Q 021210 147 NRKRILVLNREDMISMADRN----AWATYFAKQ----GTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 147 ~k~~IlVlNK~DLv~~~~~~----~~~~~~~~~----g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
+.|.++|+||+|+.+.+..+ +..+++.+. +.+++++||++|.|+++|.+.|.+..
T Consensus 125 ~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 125 NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhh
Confidence 56779999999999754332 233344443 35789999999999999998887754
No 19
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.12 E-value=8e-11 Score=115.96 Aligned_cols=125 Identities=16% Similarity=0.130 Sum_probs=61.8
Q ss_pred CCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC----------
Q 021210 67 SNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL---------- 134 (316)
Q Consensus 67 ~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~---------- 134 (316)
.+++...|....|++.++|++..+.+|....+. +-++||| .++.+++...+..+|++|+|+|++++.
T Consensus 90 ~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~~~iiDtPGh-~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~q 168 (467)
T 1r5b_A 90 WYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGH-KGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQ 168 (467)
T ss_dssp -----------------------CCEEECSSEEEEECCCCC------------TTSCSEEEEEEECSTTHHHHTTSTTCC
T ss_pred hhhhhhcccchhhhhcCceEEeeeEEEecCCeEEEEEECCCc-HHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCc
Confidence 456777899999999999999999888766554 7789999 789999999999999999999999863
Q ss_pred CCCcHHHHHHhCCCC-EEEEEEccCCCC----hHh----HHHHHHHHHhc-C------ceEEEeccccccchhhh
Q 021210 135 STTHPLMDQWLGNRK-RILVLNREDMIS----MAD----RNAWATYFAKQ-G------TKVIFSNGQLGMGTMKL 193 (316)
Q Consensus 135 ~~~~~~i~~~l~~k~-~IlVlNK~DLv~----~~~----~~~~~~~~~~~-g------~~vi~iSa~~g~gi~~L 193 (316)
+..+..+...+ +.| +++|+||+|+.+ .+. .++..+++.+. | ..++++||++|.|+.++
T Consensus 169 t~e~l~~~~~~-~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l 242 (467)
T 1r5b_A 169 TREHAVLARTQ-GINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR 242 (467)
T ss_dssp HHHHHHHHHHT-TCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred HHHHHHHHHHc-CCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccc
Confidence 11122222222 444 999999999964 111 12233444444 3 45899999999998763
No 20
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.05 E-value=5.7e-10 Score=107.80 Aligned_cols=125 Identities=17% Similarity=0.159 Sum_probs=88.0
Q ss_pred chhhhhhccccCCcceEEEecc-----------------------cc--ccccccchHHHHHHHHHHHHhhcCeEEEEEe
Q 021210 75 EAYEEECDWADLDADLYYWTKS-----------------------LR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRD 129 (316)
Q Consensus 75 g~~~e~e~~~~~d~~~~~~~~~-----------------------~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvD 129 (316)
....|.+.++|++..+..+.-. .. .+-++||| .++.+++...+..+|++|+|+|
T Consensus 37 ~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh-~~f~~~~~~~~~~~D~~ilVvd 115 (410)
T 1kk1_A 37 THSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGH-EALMTTMLAGASLMDGAILVIA 115 (410)
T ss_dssp --CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSH-HHHHHHHHHCGGGCSEEEEEEE
T ss_pred cChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECCCh-HHHHHHHHhhhhhCCEEEEEEE
Confidence 3445677888888776532210 02 26789999 7788999999999999999999
Q ss_pred CCCCC-C---CCcHHHHHHhCCCCEEEEEEccCCCChHh----HHHHHHHHHh---cCceEEEeccccccchhhhHHHHH
Q 021210 130 ARIPL-S---TTHPLMDQWLGNRKRILVLNREDMISMAD----RNAWATYFAK---QGTKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 130 ar~~~-~---~~~~~i~~~l~~k~~IlVlNK~DLv~~~~----~~~~~~~~~~---~g~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
++++. . ..+..+...+..+++++|+||+|+.+..+ .+++.+++.. .+.+++++||++|.|+++|.+.|.
T Consensus 116 a~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~ 195 (410)
T 1kk1_A 116 ANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIE 195 (410)
T ss_dssp TTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred CCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHH
Confidence 99764 1 22223333455678999999999998653 2233344433 246799999999999999998887
Q ss_pred Hh
Q 021210 199 AL 200 (316)
Q Consensus 199 ~l 200 (316)
..
T Consensus 196 ~~ 197 (410)
T 1kk1_A 196 DF 197 (410)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 21
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.04 E-value=5.9e-11 Score=116.62 Aligned_cols=126 Identities=17% Similarity=0.159 Sum_probs=91.6
Q ss_pred CCCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC---------
Q 021210 66 NSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL--------- 134 (316)
Q Consensus 66 ~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~--------- 134 (316)
.++++.+.|....|++.++|+|..+..|...... +-++||| .++.+++...+..+|++|+|+|++++.
T Consensus 53 ~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~~~iiDtPGh-~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~ 131 (458)
T 1f60_A 53 SFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVIDAPGH-RDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDG 131 (458)
T ss_dssp CCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEEEEEECCCC-TTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTS
T ss_pred chhhhhhhccchhHHhcCcEEEEEEEEEecCCceEEEEECCCc-HHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcch
Confidence 3455666788889999999999999988876554 6789999 688899999999999999999998653
Q ss_pred -CCCcHHHHHHhCCCCEEEEEEccCCCC--hHhH----HHHHHHHHhcC-----ceEEEeccccccchhh
Q 021210 135 -STTHPLMDQWLGNRKRILVLNREDMIS--MADR----NAWATYFAKQG-----TKVIFSNGQLGMGTMK 192 (316)
Q Consensus 135 -~~~~~~i~~~l~~k~~IlVlNK~DLv~--~~~~----~~~~~~~~~~g-----~~vi~iSa~~g~gi~~ 192 (316)
+.++..+...+..+++++|+||+|+.+ .+.. ++..+++...+ ..++++||++|.|+.+
T Consensus 132 qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 132 QTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred hHHHHHHHHHHcCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 111222222233345899999999984 2221 22333344444 4689999999999864
No 22
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.02 E-value=1.1e-09 Score=105.67 Aligned_cols=100 Identities=19% Similarity=0.150 Sum_probs=76.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC----CcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHH--
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST----THPLMDQWLGNRKRILVLNREDMISMADRNAWATYFA-- 173 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~----~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~-- 173 (316)
+-++||| .++.+++...+..+|++|+|+|++++... .+..+...+..+|+++|+||+|+.+.++..+..+.+.
T Consensus 79 iiDtPGh-~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~ 157 (403)
T 3sjy_A 79 FIDAPGH-EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQF 157 (403)
T ss_dssp EEECCCC-GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred EEECCCc-HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHH
Confidence 6688999 78999999999999999999999987522 1223333445679999999999998765444333332
Q ss_pred --hc---CceEEEeccccccchhhhHHHHHHh
Q 021210 174 --KQ---GTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 174 --~~---g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
.. +.+++++||++|.|+++|.+.|.+.
T Consensus 158 l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~ 189 (403)
T 3sjy_A 158 TKGTWAENVPIIPVSALHKINIDSLIEGIEEY 189 (403)
T ss_dssp HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHhhCCCCCEEEEEECCCCcChHHHHHHHHHh
Confidence 21 3579999999999999999888764
No 23
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.01 E-value=8.7e-10 Score=111.71 Aligned_cols=160 Identities=15% Similarity=0.034 Sum_probs=96.2
Q ss_pred CCCcchhhhhhccccCCcceE--EEec-c----ccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHH
Q 021210 71 NGSIEAYEEECDWADLDADLY--YWTK-S----LRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ 143 (316)
Q Consensus 71 ~~~~g~~~e~e~~~~~d~~~~--~~~~-~----~~~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~ 143 (316)
.+.|-...|++.++|++.... .|.. . .-.+-++||| .++..++...+..+|.+|+|+|+.++..........
T Consensus 39 ~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh-~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~ 117 (599)
T 3cb4_D 39 QVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH-VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCY 117 (599)
T ss_dssp ------------------CEEEEEEECTTSCEEEEEEEECCCC-GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHH
T ss_pred cccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc-hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH
Confidence 445556668888998886655 3331 1 1127789999 678888999999999999999999877554332221
Q ss_pred -H-hCCCCEEEEEEccCCCChHh---HHHHHHHHHhcCc---eEEEeccccccchhhhHHHHHHhhhhhhhhhcccCCCc
Q 021210 144 -W-LGNRKRILVLNREDMISMAD---RNAWATYFAKQGT---KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLP 215 (316)
Q Consensus 144 -~-l~~k~~IlVlNK~DLv~~~~---~~~~~~~~~~~g~---~vi~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~ 215 (316)
. ..+.|+++|+||+|+.+... .+++.+. .+. +++++||++|.|+++|.+.+.+..+.. .+...
T Consensus 118 ~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~---lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p------~~~~~ 188 (599)
T 3cb4_D 118 TAMEMDLEVVPVLNKIDLPAADPERVAEEIEDI---VGIDATDAVRCSAKTGVGVQDVLERLVRDIPPP------EGDPE 188 (599)
T ss_dssp HHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHH---TCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCC------CCCTT
T ss_pred HHHHCCCCEEEeeeccCcccccHHHHHHHHHHH---hCCCcceEEEeecccCCCchhHHHHHhhcCCCc------ccccc
Confidence 1 23789999999999976321 2223222 343 489999999999999988776554321 12223
Q ss_pred cceEEeEecc---CCCCcchhHHhhhcC
Q 021210 216 RAVRAGIVGY---PNVGKSSLINRLLKR 240 (316)
Q Consensus 216 ~~~~i~ivG~---pNvGKSTLiN~L~~~ 240 (316)
.+++..+... +++|+.++++-+.|.
T Consensus 189 ~p~~alI~d~~~d~~~G~v~~~rV~sG~ 216 (599)
T 3cb4_D 189 GPLQALIIDSWFDNYLGVVSLIRIKNGT 216 (599)
T ss_dssp SCCEEEEEEEEEETTTEEEEEEEEEESC
T ss_pred CCceeeeeeccccccccEEEEEEEEeCE
Confidence 4555555555 899999998887764
No 24
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.00 E-value=2.2e-10 Score=103.36 Aligned_cols=60 Identities=27% Similarity=0.285 Sum_probs=42.2
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCC-CceeeEEEEE--e-CCcEEEEeCCCcccC
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-GVTRVLKWVR--F-GKDLEFLDSPGIIPM 275 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p-gtT~~~~~~~--~-~~~~~liDTPGi~~~ 275 (316)
..++|+++|.||||||||+|+|++.+...++..+ |+|+...... . +..+.|+||||+...
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~ 83 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSS 83 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSST
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCC
Confidence 4689999999999999999999998876655444 5887754332 2 457899999999743
No 25
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.00 E-value=4.2e-10 Score=108.77 Aligned_cols=100 Identities=20% Similarity=0.206 Sum_probs=68.5
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC-C---CCcHHHHHHhCCCCEEEEEEccCCCChHh----HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-S---TTHPLMDQWLGNRKRILVLNREDMISMAD----RNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~-~---~~~~~i~~~l~~k~~IlVlNK~DLv~~~~----~~~~~~~ 171 (316)
+-++||| .++.+++...+..+|++|+|+|++++. . ..+..+...+..+|+++|+||+|+.+..+ .++..++
T Consensus 85 iiDtPGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~ 163 (408)
T 1s0u_A 85 FVDSPGH-ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEF 163 (408)
T ss_dssp EEECSSH-HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHH
T ss_pred EEECCCH-HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHH
Confidence 6688999 778888888899999999999999764 1 12223333445678999999999986542 2333444
Q ss_pred HHh---cCceEEEeccccccchhhhHHHHHHh
Q 021210 172 FAK---QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 172 ~~~---~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
+.+ .+.+++++||++|.|+++|.+.|...
T Consensus 164 l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~ 195 (408)
T 1s0u_A 164 VKGTIAENAPIIPISAHHEANIDVLLKAIQDF 195 (408)
T ss_dssp HTTSTTTTCCEEEC------CHHHHHHHHHHH
T ss_pred HhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence 433 24679999999999999999888763
No 26
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.00 E-value=2.7e-10 Score=105.96 Aligned_cols=58 Identities=40% Similarity=0.599 Sum_probs=48.2
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEE--Ee-CCcEEEEeCCCcccC
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIPM 275 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~--~~-~~~~~liDTPGi~~~ 275 (316)
.+|+++|.||||||||+|+|++.+...+++.|+||++.... .. +..+.|+||||+..+
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~ 68 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKP 68 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccch
Confidence 46999999999999999999999888889999999985322 12 446889999999854
No 27
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.00 E-value=3.1e-10 Score=110.70 Aligned_cols=122 Identities=13% Similarity=0.110 Sum_probs=78.7
Q ss_pred CCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCC-------CCCCcH-
Q 021210 70 SNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP-------LSTTHP- 139 (316)
Q Consensus 70 ~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~-------~~~~~~- 139 (316)
+.+.|....|++.++|++..+..|...... +-++||| .++.+++...+..+|++|+|+|++++ ......
T Consensus 56 ~~~~D~~~~E~~~giTi~~~~~~~~~~~~~~~iiDtpG~-~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~ 134 (435)
T 1jny_A 56 AFLLDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGH-RDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTRE 134 (435)
T ss_dssp HHHHHHHHHC-----------CEEECSSCEEEECCCSSS-TTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHH
T ss_pred hhhhccChHHHhcCceeEeeEEEEecCCeEEEEEECCCc-HHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHH
Confidence 345677888889999999998888766554 7789999 77888899999999999999999985 222111
Q ss_pred --HHHHHhCCCCEEEEEEccCCCCh----Hh----HHHHHHHHHhcC-----ceEEEeccccccchhh
Q 021210 140 --LMDQWLGNRKRILVLNREDMISM----AD----RNAWATYFAKQG-----TKVIFSNGQLGMGTMK 192 (316)
Q Consensus 140 --~i~~~l~~k~~IlVlNK~DLv~~----~~----~~~~~~~~~~~g-----~~vi~iSa~~g~gi~~ 192 (316)
.+...+..+++++|+||+|+.+. +. .++..+++...+ ..++++||++|.|+.+
T Consensus 135 ~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e 202 (435)
T 1jny_A 135 HIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 202 (435)
T ss_dssp HHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred HHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccc
Confidence 12222344678999999999872 11 223344444445 5689999999999874
No 28
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.99 E-value=1.5e-10 Score=117.69 Aligned_cols=128 Identities=16% Similarity=0.150 Sum_probs=94.6
Q ss_pred CCCCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC--------
Q 021210 65 GNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-------- 134 (316)
Q Consensus 65 ~~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~-------- 134 (316)
+.++++.+.|....|++.++|+|..+..|...... +.++||| .++.+++...+..+|++|+|+|++.+.
T Consensus 212 ~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~~~~iiDTPG~-e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~ 290 (611)
T 3izq_1 212 SSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGH-RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLD 290 (611)
T ss_dssp SCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSCEEEEEECCSS-SCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTT
T ss_pred cccceeeeeccchhhhhCCeeEeeeeEEEecCCceEEEEECCCC-cccHHHHHHHHhhcCceEEEEECCCCcccccchhh
Confidence 44567777889999999999999999998887655 7789999 778888889999999999999998641
Q ss_pred --CCCcHHHHHHhCCCCEEEEEEccCCCCh--Hh----HHHHHHHHHhcC-----ceEEEeccccccchhhh
Q 021210 135 --STTHPLMDQWLGNRKRILVLNREDMISM--AD----RNAWATYFAKQG-----TKVIFSNGQLGMGTMKL 193 (316)
Q Consensus 135 --~~~~~~i~~~l~~k~~IlVlNK~DLv~~--~~----~~~~~~~~~~~g-----~~vi~iSa~~g~gi~~L 193 (316)
+..+..+...++.+++|+|+||+|+.+. .. .++..+++.+.| ..++++||++|.|+.++
T Consensus 291 ~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 291 GQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp SHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred hHHHHHHHHHHHcCCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 1112222233344669999999999872 11 122233344444 47899999999999854
No 29
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.99 E-value=6.6e-10 Score=94.70 Aligned_cols=61 Identities=33% Similarity=0.610 Sum_probs=43.2
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCc-ccccCCCCCceeeEEEEEeCCcEEEEeCCCcccCCC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRI 277 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~-~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~~~~~ 277 (316)
.++|+++|.+|||||||+|+|++.. ...+++.+|+|++...+..+..+.++||||+.....
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~~ 84 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKV 84 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCcccc
Confidence 5789999999999999999999876 556788899999988887888899999999865443
No 30
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.99 E-value=1.6e-10 Score=114.24 Aligned_cols=59 Identities=31% Similarity=0.400 Sum_probs=29.4
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-CCcEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~~~~~liDTPGi~~ 274 (316)
..++|+++|.||||||||+|+|++.....+++.||||++... +.+ +..+.|+||||+..
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~ 293 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE 293 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCc
Confidence 367899999999999999999999887889999999999643 333 44689999999975
No 31
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.98 E-value=1.1e-09 Score=92.96 Aligned_cols=60 Identities=33% Similarity=0.514 Sum_probs=53.1
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEEEeCCCcccCC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMR 276 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~~~~ 276 (316)
..+|+++|.+|||||||+|+|++.....+++.+|+|++......+..+.++||||+....
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~ 82 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAK 82 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCcccc
Confidence 468999999999999999999998877788899999998887778889999999986543
No 32
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.97 E-value=6.5e-10 Score=94.45 Aligned_cols=119 Identities=15% Similarity=-0.015 Sum_probs=70.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCEEEEEEccCCCChHh-HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMAD-RNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~IlVlNK~DLv~~~~-~~~~~~~ 171 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+ ..+..+. .+.|+++|+||+|+.+... .++..++
T Consensus 68 i~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 146 (195)
T 1x3s_A 68 IWDTAGQ-ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKF 146 (195)
T ss_dssp EEEECSS-GGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHH
T ss_pred EEeCCCc-hhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHH
Confidence 4467887 3444556677899999999999986533211 1122222 2568899999999954321 2233444
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcch
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSS 232 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKST 232 (316)
....+..++.+||++|.|++++.+.+.+........ .--+.+|+||||
T Consensus 147 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~-------------~~~~~~n~gkSs 194 (195)
T 1x3s_A 147 ARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGL-------------WESENQNSGPSS 194 (195)
T ss_dssp HHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTSGGG-------------TCC---------
T ss_pred HHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhhhhh-------------hcccccCCCCCC
Confidence 556678899999999999999888766543321111 112445999997
No 33
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.97 E-value=1.9e-10 Score=112.26 Aligned_cols=56 Identities=39% Similarity=0.611 Sum_probs=35.0
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-CCcEEEEeCCCccc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIP 274 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~~~~~liDTPGi~~ 274 (316)
+|+++|.||||||||+|+|.+.+...+++.||+|++... +.. +..+.|+||||+..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~ 61 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFD 61 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccc
Confidence 589999999999999999999887789999999998543 222 55789999999874
No 34
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.97 E-value=1.3e-10 Score=114.99 Aligned_cols=57 Identities=39% Similarity=0.566 Sum_probs=49.4
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEe-CCcEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~-~~~~~liDTPGi~ 273 (316)
+++|+++|.||||||||+|+|.+.+...++++||||++.. .+.+ +..+.|+||||+.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~ 302 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVR 302 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCC
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCcc
Confidence 5789999999999999999999988788999999999853 3333 4568999999997
No 35
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.96 E-value=1.6e-09 Score=104.55 Aligned_cols=116 Identities=17% Similarity=0.052 Sum_probs=84.0
Q ss_pred CcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCC
Q 021210 73 SIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNR 148 (316)
Q Consensus 73 ~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k 148 (316)
.|....|++.++|++..+..|...... +-++||| .++.+.+...+..+|++|+|+|++++......+....+ .+.
T Consensus 50 ~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~-~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~i 128 (405)
T 2c78_A 50 IDKAPEERARGITINTAHVEYETAKRHYSHVDCPGH-ADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128 (405)
T ss_dssp HSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCS-GGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCCh-HHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCC
Confidence 456667889999999988877765444 7789999 57888999999999999999999987643332222222 255
Q ss_pred C-EEEEEEccCCCC-hHhH----HHHHHHHHhcC-----ceEEEeccccccc
Q 021210 149 K-RILVLNREDMIS-MADR----NAWATYFAKQG-----TKVIFSNGQLGMG 189 (316)
Q Consensus 149 ~-~IlVlNK~DLv~-~~~~----~~~~~~~~~~g-----~~vi~iSa~~g~g 189 (316)
| +++|+||+|+.+ .+.. ++..+++...+ .+++++||++|.|
T Consensus 129 p~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 129 PYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp CCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred CEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence 6 889999999985 2211 12334444444 4689999999987
No 36
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.95 E-value=7.4e-10 Score=96.68 Aligned_cols=59 Identities=27% Similarity=0.407 Sum_probs=51.0
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCc-ccccCCCCCceeeEEEEEeC----CcEEEEeCCCcccC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFG----KDLEFLDSPGIIPM 275 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~-~~~vs~~pgtT~~~~~~~~~----~~~~liDTPGi~~~ 275 (316)
.++|+++|.+|||||||+|+|++.. ...++..+|+|++...+... ..+.|+||||+...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 92 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYA 92 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcc
Confidence 4689999999999999999999887 46788999999998776664 57999999998654
No 37
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.95 E-value=6.8e-10 Score=101.67 Aligned_cols=59 Identities=31% Similarity=0.503 Sum_probs=49.4
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCcccCC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMR 276 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~~~ 276 (316)
.++|+++|.+|||||||+|+|++.. ..+++.||+|.+.....+ +..+.|+||||+....
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~ 64 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccc
Confidence 4689999999999999999999887 688999999988644332 5578999999997654
No 38
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.94 E-value=8.7e-10 Score=98.20 Aligned_cols=64 Identities=23% Similarity=0.389 Sum_probs=42.6
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCC--CceeeEEEEE--e-CCcEEEEeCCCcccCCCCCH
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVR--F-GKDLEFLDSPGIIPMRISDQ 280 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p--gtT~~~~~~~--~-~~~~~liDTPGi~~~~~~~~ 280 (316)
..++|+++|.+|||||||+|+|++... ..+..+ ++|++..... . +..+.|+||||+......+.
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~ 96 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKV-FHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNA 96 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCC-SCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCc-CccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHH
Confidence 357899999999999999999998775 344444 6777754332 3 45789999999987655443
No 39
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.94 E-value=6.7e-10 Score=93.87 Aligned_cols=59 Identities=31% Similarity=0.459 Sum_probs=48.1
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeC-CcEEEEeCCCcccC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG-KDLEFLDSPGIIPM 275 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~-~~~~liDTPGi~~~ 275 (316)
..+|+++|.+|||||||+|+|.+.....+++.||+|++.. .+..+ ..+.++||||+...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 65 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA 65 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccc
Confidence 4689999999999999999999887666888999998753 33443 36889999999753
No 40
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.93 E-value=6.9e-10 Score=103.39 Aligned_cols=60 Identities=38% Similarity=0.607 Sum_probs=49.7
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEE--Ee--CCcEEEEeCCCcccCC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF--GKDLEFLDSPGIIPMR 276 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~--~~--~~~~~liDTPGi~~~~ 276 (316)
+-.|+++|.||||||||+|+|++.+...+++.|+||++.... .. +..+.|+||||+..+.
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~ 73 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPK 73 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccc
Confidence 457999999999999999999999988899999999985432 22 3468899999998654
No 41
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.92 E-value=6.4e-09 Score=90.64 Aligned_cols=103 Identities=18% Similarity=0.166 Sum_probs=73.5
Q ss_pred cccccch---------HHHHHHHHHHHHhh---cCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhH
Q 021210 100 VQWYPGH---------IAKTEKELKDQLKL---MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADR 165 (316)
Q Consensus 100 i~~~Pgh---------~~~~~r~l~~~i~~---aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~ 165 (316)
+-++||+ ..++...+...+.. +|++++|+|++++.+..+..+..++. +.|+++|+||+|+.+..+.
T Consensus 83 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~ 162 (223)
T 4dhe_A 83 LVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQES 162 (223)
T ss_dssp EEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHH
T ss_pred EEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhH
Confidence 5677885 33444444455555 88899999999877766666666654 6899999999999986553
Q ss_pred HH----HHHHHHh-------cCceEEEeccccccchhhhHHHHHHhhh
Q 021210 166 NA----WATYFAK-------QGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (316)
Q Consensus 166 ~~----~~~~~~~-------~g~~vi~iSa~~g~gi~~L~~~L~~l~~ 202 (316)
.. +.+.+.. .+.+++++||++|.|+++|.+.+.+...
T Consensus 163 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 163 INALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLR 210 (223)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcC
Confidence 32 2233333 2367899999999999999988776543
No 42
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.92 E-value=1.4e-09 Score=104.74 Aligned_cols=127 Identities=17% Similarity=0.080 Sum_probs=88.7
Q ss_pred CcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCC
Q 021210 73 SIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNR 148 (316)
Q Consensus 73 ~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k 148 (316)
.|....|++.++|++..+..|...... +-++||| .++.+++...+..+|++|+|+|++++......+...++ .+.
T Consensus 41 ~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~-~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~v 119 (397)
T 1d2e_A 41 IDNAPEERARGITINAAHVEYSTAARHYAHTDCPGH-ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGV 119 (397)
T ss_dssp HHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSH-HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTC
T ss_pred hhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCCh-HHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 344556778889999988877765444 7789999 67888999999999999999999987543322222222 255
Q ss_pred C-EEEEEEccCCCC-hHhH----HHHHHHHHhcC-----ceEEEeccccccc----------hhhhHHHHHHh
Q 021210 149 K-RILVLNREDMIS-MADR----NAWATYFAKQG-----TKVIFSNGQLGMG----------TMKLSRLAKAL 200 (316)
Q Consensus 149 ~-~IlVlNK~DLv~-~~~~----~~~~~~~~~~g-----~~vi~iSa~~g~g----------i~~L~~~L~~l 200 (316)
| +++|+||+|+.+ .+.. ++..+++.+.+ .+++++||++|.| +.+|.+.+.+.
T Consensus 120 p~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~ 192 (397)
T 1d2e_A 120 EHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY 192 (397)
T ss_dssp CCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred CeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHh
Confidence 6 689999999985 2211 23334444444 4789999999764 66777666553
No 43
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.91 E-value=1.5e-09 Score=98.60 Aligned_cols=58 Identities=31% Similarity=0.434 Sum_probs=47.5
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-CCcEEEEeCCCcccCCC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPMRI 277 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~~~~~liDTPGi~~~~~ 277 (316)
+|+++|.||||||||+|+|++.. ..+++.||+|.+... +.. +..+.|+||||+.....
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~ 63 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVA 63 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccc
Confidence 69999999999999999999876 678999999987543 333 44689999999976543
No 44
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.90 E-value=7.4e-11 Score=119.51 Aligned_cols=136 Identities=15% Similarity=0.105 Sum_probs=62.7
Q ss_pred CCCCCCCCCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC-------C
Q 021210 65 GNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-------S 135 (316)
Q Consensus 65 ~~~~~~~~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~-------~ 135 (316)
+.++++.+.|....|++.++|++..+..|....+. +-++||| .++.+++...+..+|++|+|+|+..+. .
T Consensus 222 ~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i~iiDTPGh-~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~ 300 (592)
T 3mca_A 222 GSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGH-RDFISGMIAGASSADFAVLVVDSSQNNFERGFLEN 300 (592)
T ss_dssp -------------------------------------CCEEESS-SEEEEECCC-------CCSEEEEEECCSSTTSCSC
T ss_pred cchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeEEEEEECCCh-HHHHHHHHHHHhhCCEEEEEEECCCCccccccccc
Confidence 34667888999999999999999999888776554 7789999 567777778889999999999998753 2
Q ss_pred CCcH---HHHHHhCCCCEEEEEEccCCCC--hHhH----HHHHHHH-HhcCc-----eEEEeccccccchh---------
Q 021210 136 TTHP---LMDQWLGNRKRILVLNREDMIS--MADR----NAWATYF-AKQGT-----KVIFSNGQLGMGTM--------- 191 (316)
Q Consensus 136 ~~~~---~i~~~l~~k~~IlVlNK~DLv~--~~~~----~~~~~~~-~~~g~-----~vi~iSa~~g~gi~--------- 191 (316)
.... .+...++.+++|+|+||+|+++ .... .++.+++ ...|+ .++++||++|.|+.
T Consensus 301 ~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~ 380 (592)
T 3mca_A 301 GQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYK 380 (592)
T ss_dssp SSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGG
T ss_pred hHHHHHHHHHHHcCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCccccccccccccc
Confidence 2222 2222333445999999999986 2222 2233334 33443 68999999999997
Q ss_pred -----hhHHHHHHhh
Q 021210 192 -----KLSRLAKALA 201 (316)
Q Consensus 192 -----~L~~~L~~l~ 201 (316)
.|.+.|..+.
T Consensus 381 w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 381 WYKGPTLLSALDQLV 395 (592)
T ss_dssp TCCSCCHHHHHHTSC
T ss_pred ccchHHHHHHHHhhc
Confidence 6777766543
No 45
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.89 E-value=2.7e-09 Score=96.74 Aligned_cols=62 Identities=23% Similarity=0.356 Sum_probs=49.8
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCcccCCC
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRI 277 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~~~~ 277 (316)
..++|+++|.+|||||||+|+|++.....++..+++|.......+ +..+.|+||||+.....
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~ 99 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGY 99 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCccc
Confidence 357899999999999999999999887788889998887544332 44789999999976543
No 46
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.89 E-value=1.8e-09 Score=98.18 Aligned_cols=60 Identities=27% Similarity=0.381 Sum_probs=50.0
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCcccCC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMR 276 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~~~ 276 (316)
.++|+++|.+|+|||||+|+|++.....+++.+++|++...+.+ +..+.++||||+....
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~ 101 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGG 101 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCc
Confidence 57899999999999999999999887788889999987554433 3468999999997543
No 47
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.88 E-value=2.7e-09 Score=96.89 Aligned_cols=64 Identities=36% Similarity=0.497 Sum_probs=50.6
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCcccCCCCCHH
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRISDQA 281 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~~~~~~~~ 281 (316)
.++|+++|.||||||||+|+|++.. ..+++.||+|.+.....+ +..+.|+||||.........+
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~-~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~ 71 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSID 71 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHH
Confidence 5789999999999999999999876 458889999988654333 346899999999765443333
No 48
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.87 E-value=3.3e-09 Score=97.32 Aligned_cols=60 Identities=37% Similarity=0.462 Sum_probs=49.4
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe--CCcEEEEeCCCcccCCC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--GKDLEFLDSPGIIPMRI 277 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~--~~~~~liDTPGi~~~~~ 277 (316)
.++|+++|.||||||||+|+|.+.. ..+++.||+|.+.....+ +..+.++||||......
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~ 64 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSP 64 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCC
Confidence 4689999999999999999999875 578899999988654444 45789999999976543
No 49
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.86 E-value=7e-10 Score=109.19 Aligned_cols=59 Identities=36% Similarity=0.510 Sum_probs=44.6
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEe-CCcEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~-~~~~~liDTPGi~~ 274 (316)
..++|+++|.||||||||+|+|++.....+++.||||++.. .+.+ +..+.|+||||+..
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~ 284 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRE 284 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCcccc
Confidence 35789999999999999999999988778999999999853 2333 45789999999965
No 50
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.85 E-value=4.2e-09 Score=88.97 Aligned_cols=56 Identities=36% Similarity=0.526 Sum_probs=47.9
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEEEeCCCcccC
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM 275 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~~~ 275 (316)
++|+++|.+|||||||+|+|.+.. ..++..||+|++...+... .+.++||||+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~ 57 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEWK-NHKIIDMPGFGFM 57 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC-CSSSSSTTCTTSCEEEEET-TEEEEECCCBSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC-CccCCCCCccceeEEEecC-CEEEEECCCcccc
Confidence 479999999999999999999876 5677889999888777665 7999999998643
No 51
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.85 E-value=1.5e-09 Score=100.83 Aligned_cols=56 Identities=32% Similarity=0.456 Sum_probs=46.4
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-CCcEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~~~~~liDTPGi~ 273 (316)
.+|+++|.||||||||+|+|++.+...+++.|+||++... +.. +..+.++||||+.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~ 67 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH 67 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCC
Confidence 3699999999999999999999987788999999987432 222 3468899999986
No 52
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.85 E-value=2.9e-09 Score=95.84 Aligned_cols=62 Identities=18% Similarity=0.325 Sum_probs=48.6
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCC-ceeeEEE--EEe-CCcEEEEeCCCcccCCC
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-VTRVLKW--VRF-GKDLEFLDSPGIIPMRI 277 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pg-tT~~~~~--~~~-~~~~~liDTPGi~~~~~ 277 (316)
..++|+++|.+|||||||+|+|++.....++..|+ +|++... +.. +..+.|+||||+.....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~ 86 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKD 86 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCC
Confidence 35789999999999999999999887666666666 7777543 222 45799999999986544
No 53
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.84 E-value=1.2e-08 Score=109.33 Aligned_cols=128 Identities=16% Similarity=0.069 Sum_probs=81.5
Q ss_pred CCcchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CC
Q 021210 72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GN 147 (316)
Q Consensus 72 ~~~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~ 147 (316)
..|....|++.++|++..+..|...... +-++||| .++.+++...+..+|++|+|+|++++......+....+ .+
T Consensus 333 ~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGH-edF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lg 411 (1289)
T 3avx_A 333 QIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVG 411 (1289)
T ss_dssp ---------------CCSCEEEECSSCEEEEEECCCH-HHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHT
T ss_pred ccccccccccCceeEEEEEEEEcCCCEEEEEEECCCh-HHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcC
Confidence 3566677889999999988888765444 7789999 77889999999999999999999987655433332222 25
Q ss_pred CC-EEEEEEccCCCChHh-H----HHHHHHHHhcC-----ceEEEeccccc--------cchhhhHHHHHHh
Q 021210 148 RK-RILVLNREDMISMAD-R----NAWATYFAKQG-----TKVIFSNGQLG--------MGTMKLSRLAKAL 200 (316)
Q Consensus 148 k~-~IlVlNK~DLv~~~~-~----~~~~~~~~~~g-----~~vi~iSa~~g--------~gi~~L~~~L~~l 200 (316)
.| +|+|+||+|+.+..+ . ++..+++.+.+ .+++++||++| .|+.+|.+.+...
T Consensus 412 IP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~ 483 (1289)
T 3avx_A 412 VPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY 483 (1289)
T ss_dssp CSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence 56 789999999986322 1 23334444444 46899999999 4677777776653
No 54
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.84 E-value=4e-09 Score=96.02 Aligned_cols=64 Identities=31% Similarity=0.431 Sum_probs=50.8
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEE--e-CCcEEEEeCCCcccCCCCCHH
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIPMRISDQA 281 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~--~-~~~~~liDTPGi~~~~~~~~~ 281 (316)
..+|+++|.+|||||||+|+|++... .+++.||+|.+..... . +..+.++||||+........+
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~ 69 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSID 69 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHH
Confidence 35799999999999999999998864 8889999998864332 2 446899999999865544433
No 55
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.82 E-value=2.5e-09 Score=108.02 Aligned_cols=57 Identities=26% Similarity=0.291 Sum_probs=41.5
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCce----eeEEEE------EeCCcEEEEeCCCcccC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT----RVLKWV------RFGKDLEFLDSPGIIPM 275 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT----~~~~~~------~~~~~~~liDTPGi~~~ 275 (316)
.++|+|+|.||||||||||+|++..... +.+|+| +..... ..+..+.|+||||+...
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence 4679999999999999999999986431 444444 443221 12457999999999854
No 56
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.81 E-value=5.3e-09 Score=87.34 Aligned_cols=59 Identities=31% Similarity=0.549 Sum_probs=41.5
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEe-CCcEEEEeCCCcccCC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGIIPMR 276 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~-~~~~~liDTPGi~~~~ 276 (316)
..+|+++|.+|||||||+|+|.+.. ..++..||+|++.. .+.. +..+.++||||.....
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 64 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT 64 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCS-SSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-eeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCC
Confidence 3579999999999999999999765 45677888887642 2333 4468999999987543
No 57
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.80 E-value=1.6e-08 Score=96.61 Aligned_cols=119 Identities=18% Similarity=0.040 Sum_probs=85.2
Q ss_pred hccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH--hCCCCE-EEEEE
Q 021210 81 CDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW--LGNRKR-ILVLN 155 (316)
Q Consensus 81 e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~--l~~k~~-IlVlN 155 (316)
+.++|+|..+..|...... +-++||| .++.+++...++.+|++|+|+| ..+......+...+ ..+.|. ++++|
T Consensus 43 ~~giTi~~~~~~~~~~~~~i~iiDtPGh-~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvN 120 (370)
T 2elf_A 43 KKGTSSDITMYNNDKEGRNMVFVDAHSY-PKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALT 120 (370)
T ss_dssp EEEEESSSEEEEECSSSSEEEEEECTTT-TTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred hCCEEEEeeEEEEecCCeEEEEEECCCh-HHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEE
Confidence 6788999999888766554 6789999 6788999999999999999999 66543222222222 125566 99999
Q ss_pred -ccCCCChHhHH----HHHHHHHhcC---ceEEE--ecccc---ccchhhhHHHHHHhhh
Q 021210 156 -REDMISMADRN----AWATYFAKQG---TKVIF--SNGQL---GMGTMKLSRLAKALAS 202 (316)
Q Consensus 156 -K~DLv~~~~~~----~~~~~~~~~g---~~vi~--iSa~~---g~gi~~L~~~L~~l~~ 202 (316)
|+|+ +....+ +..+++.+.+ .++++ +||++ +.|+++|.+.+.+..+
T Consensus 121 NK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 121 RSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp CGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred eccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence 9999 654322 2233333322 57899 99999 9999999887776544
No 58
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.79 E-value=2.2e-08 Score=93.14 Aligned_cols=93 Identities=17% Similarity=0.168 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHH-HHHhC--CCCEEEEEEccCCC-ChHhHHHHHHHHHh-cC--ceEEEe
Q 021210 110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLM-DQWLG--NRKRILVLNREDMI-SMADRNAWATYFAK-QG--TKVIFS 182 (316)
Q Consensus 110 ~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i-~~~l~--~k~~IlVlNK~DLv-~~~~~~~~~~~~~~-~g--~~vi~i 182 (316)
+.+.....+..+|++|+|+|+..+.+..+..+ ...+. +.|+++|+||+|+. +.....++.+.+.+ .+ ..++++
T Consensus 82 ~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~v 161 (308)
T 3iev_A 82 MVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPI 161 (308)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEEC
T ss_pred HHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEE
Confidence 44556677899999999999998776666555 55554 68999999999998 66555555555544 33 678999
Q ss_pred ccccccchhhhHHHHHHhhh
Q 021210 183 NGQLGMGTMKLSRLAKALAS 202 (316)
Q Consensus 183 Sa~~g~gi~~L~~~L~~l~~ 202 (316)
||++|.|+++|.+.+.....
T Consensus 162 SA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 162 SALKGANLDELVKTILKYLP 181 (308)
T ss_dssp BTTTTBSHHHHHHHHHHHSC
T ss_pred eCCCCCCHHHHHHHHHHhCc
Confidence 99999999999988776654
No 59
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.79 E-value=5e-09 Score=95.60 Aligned_cols=59 Identities=27% Similarity=0.315 Sum_probs=39.0
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCC-------CCCceeeEEEEEe--CC---cEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP-------RPGVTRVLKWVRF--GK---DLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~-------~pgtT~~~~~~~~--~~---~~~liDTPGi~~ 274 (316)
..++|+++|.+|+|||||+|+|++.+...... .++++.+.....+ +. .+.|+||||+..
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d 77 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD 77 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSC
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccc
Confidence 35789999999999999999999887655443 3445545443333 22 689999999953
No 60
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.79 E-value=1.8e-09 Score=104.32 Aligned_cols=56 Identities=27% Similarity=0.351 Sum_probs=29.6
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEE----E-------------------eC----CcEEEEeCC
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV----R-------------------FG----KDLEFLDSP 270 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~----~-------------------~~----~~~~liDTP 270 (316)
++|+++|.||||||||+|+|++.+ ..++++|+||++.... . .+ ..+.++|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 369999999999999999999887 7889999999874221 1 01 258899999
Q ss_pred Cccc
Q 021210 271 GIIP 274 (316)
Q Consensus 271 Gi~~ 274 (316)
|+..
T Consensus 80 G~~~ 83 (397)
T 1wxq_A 80 GLVP 83 (397)
T ss_dssp ----
T ss_pred Cccc
Confidence 9964
No 61
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.78 E-value=4e-08 Score=83.52 Aligned_cols=101 Identities=15% Similarity=0.150 Sum_probs=70.6
Q ss_pred cccccch---------HHHHHHHHHHHHhhc---CeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhH
Q 021210 100 VQWYPGH---------IAKTEKELKDQLKLM---DVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADR 165 (316)
Q Consensus 100 i~~~Pgh---------~~~~~r~l~~~i~~a---DlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~ 165 (316)
+-++||. ..++...+...+..+ |++++|+|+.++.+..+..+..++. +.|+++|+||+|+.+..+.
T Consensus 73 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~ 152 (195)
T 1svi_A 73 FVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKW 152 (195)
T ss_dssp EEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGH
T ss_pred EEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHH
Confidence 4567873 244444455556655 9999999999877665555555553 6899999999999876554
Q ss_pred HHHHHH----HHh-cCceEEEeccccccchhhhHHHHHHh
Q 021210 166 NAWATY----FAK-QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 166 ~~~~~~----~~~-~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
....+. +.. .+..++++||++|.|+++|.+.+.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 192 (195)
T 1svi_A 153 DKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKM 192 (195)
T ss_dssp HHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHH
Confidence 332222 321 24678999999999999988876543
No 62
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.77 E-value=4.2e-09 Score=91.00 Aligned_cols=58 Identities=24% Similarity=0.452 Sum_probs=38.7
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCc-ccccCCCCCceeeEEEEEeCCcEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~-~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~~ 274 (316)
..+|+++|.+|+|||||+|+|.+.. ...+++.+|+|+....+..+.++.++||||+..
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~ 84 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGY 84 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC-
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcc
Confidence 4679999999999999999999876 456678899998766555555889999999853
No 63
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.77 E-value=1.5e-08 Score=85.74 Aligned_cols=59 Identities=31% Similarity=0.549 Sum_probs=46.9
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-CCcEEEEeCCCcccCC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPMR 276 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~~~~~liDTPGi~~~~ 276 (316)
..+|+++|.+|||||||+|+|.+.. ..++..|++|.+... +.. +..+.++||||.....
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 68 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT 68 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccc
Confidence 5789999999999999999999765 467778999887543 233 4468899999987553
No 64
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.75 E-value=1e-08 Score=85.31 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=40.8
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCC---cEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~---~~~liDTPGi~~ 274 (316)
.++|+++|.+|||||||+|+|.+.......+.+|+|.....+.++. .+.++||||...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 64 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEK 64 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC----
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCc
Confidence 5789999999999999999999887666777788887665555543 478999999864
No 65
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.75 E-value=4.4e-09 Score=100.38 Aligned_cols=57 Identities=40% Similarity=0.539 Sum_probs=41.4
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeC------------------CcEEEEeCCCcccC
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG------------------KDLEFLDSPGIIPM 275 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~------------------~~~~liDTPGi~~~ 275 (316)
++|+++|.||||||||+|+|++.. ..++++|+||++.. .+... ..+.++||||+...
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 579999999999999999999877 78899999998743 22222 35899999999753
No 66
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.74 E-value=2.1e-09 Score=90.46 Aligned_cols=114 Identities=15% Similarity=-0.013 Sum_probs=69.0
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhC--CCCEEEEEEccCCCChHh--HHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMISMAD--RNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~--~k~~IlVlNK~DLv~~~~--~~~~~~ 170 (316)
+-++||+ .++.......+..+|++++|+|+.++.+... ..+..... +.|+++|+||+|+.+..+ .++..+
T Consensus 58 l~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 136 (181)
T 3t5g_A 58 LVDTAGQ-DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKA 136 (181)
T ss_dssp EEECCCC-CTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHH
T ss_pred EEeCCCc-hhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHH
Confidence 3456766 2232223345678999999999986432211 11222222 679999999999964322 223334
Q ss_pred HHHhcCceEEEeccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcch
Q 021210 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSS 232 (316)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKST 232 (316)
+....+..++.+||++|.|++++.+.+.+.... .-|..++||||
T Consensus 137 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~------------------~~~~~~~gkss 180 (181)
T 3t5g_A 137 LAESWNAAFLESSAKENQTAVDVFRRIILEAEK------------------MDGACSQGKSS 180 (181)
T ss_dssp HHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHT------------------C-----CCBSC
T ss_pred HHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHH------------------hcCCcccCcCC
Confidence 455567889999999999999988776554322 12567888986
No 67
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.74 E-value=6.5e-09 Score=88.61 Aligned_cols=101 Identities=18% Similarity=0.090 Sum_probs=69.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhC------------CCCEEEEEEccCCCChHhH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG------------NRKRILVLNREDMISMADR 165 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l~------------~k~~IlVlNK~DLv~~~~~ 165 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+ ..+..++. +.|+++|+||+|+.+....
T Consensus 67 i~Dt~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~ 145 (199)
T 4bas_A 67 VFDMGGA-KKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTA 145 (199)
T ss_dssp EEEECCS-GGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCH
T ss_pred EEECCCC-HhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCH
Confidence 5567887 4455555566889999999999987643221 22333322 6799999999999876333
Q ss_pred HHHHHHH------HhcCceEEEeccccccchhhhHHHHHHhh
Q 021210 166 NAWATYF------AKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 166 ~~~~~~~------~~~g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
+++.+.+ ...+..++.+||++|.|++++.+.|.+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 146 AELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETA 187 (199)
T ss_dssp HHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHH
Confidence 3332222 23456789999999999999988776543
No 68
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.73 E-value=6.2e-08 Score=81.90 Aligned_cols=82 Identities=27% Similarity=0.411 Sum_probs=59.9
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHH----HHHHhcC-ceEEEeccccccchh
Q 021210 119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWA----TYFAKQG-TKVIFSNGQLGMGTM 191 (316)
Q Consensus 119 ~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~----~~~~~~g-~~vi~iSa~~g~gi~ 191 (316)
..+|++++|+|+..+.......+..++. +.|+++|+||+|+.+..+..... +.+...+ ..++++||++|.|++
T Consensus 103 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 182 (195)
T 3pqc_A 103 WSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGIS 182 (195)
T ss_dssp TTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHH
T ss_pred cCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 4459999999998776655555555554 68999999999998765443332 2233323 579999999999999
Q ss_pred hhHHHHHHh
Q 021210 192 KLSRLAKAL 200 (316)
Q Consensus 192 ~L~~~L~~l 200 (316)
++.+.+.+.
T Consensus 183 ~l~~~l~~~ 191 (195)
T 3pqc_A 183 ELLDLISTL 191 (195)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998877654
No 69
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.73 E-value=5.3e-09 Score=85.80 Aligned_cols=57 Identities=47% Similarity=0.589 Sum_probs=37.7
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCccc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~ 274 (316)
.+|+++|.+|||||||+|+|.+.....++..+++|++...... +..+.++||||...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 61 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWS 61 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCC
Confidence 3699999999999999999998876667888899887654332 44689999999975
No 70
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.73 E-value=1e-08 Score=87.19 Aligned_cols=101 Identities=14% Similarity=0.065 Sum_probs=68.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-------CCCCEEEEEEccCCCChHhHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-------GNRKRILVLNREDMISMADRNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-------~~k~~IlVlNK~DLv~~~~~~~~~~ 170 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+ ..+..++ .+.|+++|+||+|+.+....++..+
T Consensus 71 l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 149 (190)
T 2h57_A 71 VFDMSGQ-GRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQ 149 (190)
T ss_dssp EEEECCS-TTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHH
T ss_pred EEECCCC-HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHH
Confidence 5567886 3344444567899999999999987532211 2222322 3679999999999976533334444
Q ss_pred HHH-----hcCceEEEeccccccchhhhHHHHHHhh
Q 021210 171 YFA-----KQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 171 ~~~-----~~g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
.+. ..+..++.+||++|.|+++|.+.+.+..
T Consensus 150 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 150 LLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp HHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 432 2346789999999999999988776543
No 71
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.73 E-value=8.8e-09 Score=87.27 Aligned_cols=100 Identities=16% Similarity=0.144 Sum_probs=70.0
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH----HHHHHh-------CCCCEEEEEEccCCCChHhHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP----LMDQWL-------GNRKRILVLNREDMISMADRNAW 168 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~----~i~~~l-------~~k~~IlVlNK~DLv~~~~~~~~ 168 (316)
+-++||+ .++.......+..+|++|+|+|+.++....+. .+..++ .+.|+++|.||+|+.+....++.
T Consensus 78 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~ 156 (198)
T 3t1o_A 78 LYTVPGQ-VFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMV 156 (198)
T ss_dssp EEECCSC-CSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHH
T ss_pred EEeCCCh-HHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHH
Confidence 3456776 34445555678999999999999854222111 222332 36799999999999765444445
Q ss_pred HHHHHhcCc-eEEEeccccccchhhhHHHHHHh
Q 021210 169 ATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 169 ~~~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
.+++...+. .++.+||++|.|++++.+.+.+.
T Consensus 157 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 189 (198)
T 3t1o_A 157 RAVVDPEGKFPVLEAVATEGKGVFETLKEVSRL 189 (198)
T ss_dssp HHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCcCHHHHHHHHHHH
Confidence 555666677 89999999999999988776553
No 72
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.71 E-value=9.9e-09 Score=90.45 Aligned_cols=58 Identities=26% Similarity=0.375 Sum_probs=42.5
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~ 274 (316)
...+|+++|.+|||||||+|+|++... .+++.+++|++...... +..+.|+||||...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 88 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANV-DVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLD 88 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCE-EEECC-----CEEEEEEEETTEEEEEEECTTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCcceeeeeeeeecCCCeEEEEECCCCcC
Confidence 357899999999999999999998764 46778899988654332 34688999999964
No 73
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.71 E-value=3.2e-09 Score=97.07 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=28.5
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCccc-----ccCCCCC
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-----PAAPRPG 250 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~-----~vs~~pg 250 (316)
...+|+++|.+|||||||+|+|++.... .++..|+
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~ 64 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL 64 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCE
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccce
Confidence 3568999999999999999999988754 4455565
No 74
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.71 E-value=1.8e-08 Score=82.98 Aligned_cols=100 Identities=11% Similarity=0.036 Sum_probs=67.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhC-----CCCEEEEEEccCCCChHhHHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l~-----~k~~IlVlNK~DLv~~~~~~~~~~~~ 172 (316)
+-++||+ .++.......+..+|++++|+|+.++.+.. ...+..++. +.|+++|+||+|+.+....+++.+.+
T Consensus 48 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 126 (164)
T 1r8s_A 48 VWDVGGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKL 126 (164)
T ss_dssp EEECCCC-GGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHT
T ss_pred EEEcCCC-hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHh
Confidence 4467887 445555566789999999999998763221 122333332 67999999999997653333333332
Q ss_pred H-----hcCceEEEeccccccchhhhHHHHHHh
Q 021210 173 A-----KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 173 ~-----~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
. ..+..++.+||++|.|++++.+.+.+.
T Consensus 127 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 159 (164)
T 1r8s_A 127 GLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 159 (164)
T ss_dssp TGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred CcccccCccEEEEEcccCCCcCHHHHHHHHHHH
Confidence 2 123568899999999999988876543
No 75
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.71 E-value=1.8e-08 Score=84.94 Aligned_cols=101 Identities=12% Similarity=-0.000 Sum_probs=70.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH---h--CCCCEEEEEEccCCCChHh--HHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---L--GNRKRILVLNREDMISMAD--RNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~---l--~~k~~IlVlNK~DLv~~~~--~~~~~~ 170 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+ ..+..+ . .+.|+++|+||+|+.+..+ .++..+
T Consensus 74 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 152 (195)
T 3bc1_A 74 LWDTAGL-ERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARE 152 (195)
T ss_dssp EEEECCS-GGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred EEeCCCc-HHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH
Confidence 4567888 4566666777899999999999987543322 111111 1 3679999999999975321 223334
Q ss_pred HHHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
+....+..++++||++|.|++++.+.+.+..
T Consensus 153 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 153 LAEKYGIPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp HHHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455678899999999999999988776543
No 76
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.69 E-value=2.8e-08 Score=81.62 Aligned_cols=99 Identities=9% Similarity=-0.086 Sum_probs=67.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhC--CCCEEEEEEccCCCChHh--HHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMISMAD--RNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~--~k~~IlVlNK~DLv~~~~--~~~~~~ 170 (316)
+-++||+ .++.......+..+|.+++|+|+.++.+... ..+..... +.|+++|+||+|+.+..+ .++..+
T Consensus 56 l~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 134 (168)
T 1u8z_A 56 ILDTAGQ-EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN 134 (168)
T ss_dssp EEECCC----CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred EEECCCc-chhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHH
Confidence 5567887 4556666677899999999999986532211 11222222 689999999999975322 233444
Q ss_pred HHHhcCceEEEeccccccchhhhHHHHHH
Q 021210 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
+....+..++++||++|.|++++.+.+.+
T Consensus 135 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 163 (168)
T 1u8z_A 135 RADQWNVNYVETSAKTRANVDKVFFDLMR 163 (168)
T ss_dssp HHHHHTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHcCCeEEEeCCCCCCCHHHHHHHHHH
Confidence 45556788999999999999998877654
No 77
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.69 E-value=7.6e-09 Score=99.76 Aligned_cols=60 Identities=32% Similarity=0.378 Sum_probs=34.0
Q ss_pred ccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe------------------CCcEEEEeCCCccc
Q 021210 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF------------------GKDLEFLDSPGIIP 274 (316)
Q Consensus 215 ~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~------------------~~~~~liDTPGi~~ 274 (316)
..+.+|+++|.||||||||+|+|.+.+. .++++|+||.+... +.+ +..+.++||||+..
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 3467899999999999999999998774 88999999987422 222 22489999999985
Q ss_pred C
Q 021210 275 M 275 (316)
Q Consensus 275 ~ 275 (316)
.
T Consensus 99 ~ 99 (396)
T 2ohf_A 99 G 99 (396)
T ss_dssp -
T ss_pred c
Confidence 4
No 78
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.69 E-value=4.8e-08 Score=83.13 Aligned_cols=100 Identities=7% Similarity=-0.051 Sum_probs=69.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~ 172 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+... ..+..++ .+.|+++|+||+|+.+..+.+++.+.+
T Consensus 71 l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~ 149 (188)
T 1zd9_A 71 LWDIGGQ-PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKM 149 (188)
T ss_dssp EEEECCS-HHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHT
T ss_pred EEECCCC-HhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHh
Confidence 5678998 5566666777899999999999986533221 2233332 367999999999998653333333333
Q ss_pred H-----hcCceEEEeccccccchhhhHHHHHHh
Q 021210 173 A-----KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 173 ~-----~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
. ..+..++.+||++|.|+++|.+.+.+.
T Consensus 150 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 182 (188)
T 1zd9_A 150 NLSAIQDREICCYSISCKEKDNIDITLQWLIQH 182 (188)
T ss_dssp TGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred ChhhhccCCeeEEEEECCCCCCHHHHHHHHHHH
Confidence 2 123568899999999999988876654
No 79
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.69 E-value=1.5e-08 Score=97.64 Aligned_cols=61 Identities=30% Similarity=0.351 Sum_probs=49.5
Q ss_pred ccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeC------------------CcEEEEeCCCccc
Q 021210 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG------------------KDLEFLDSPGIIP 274 (316)
Q Consensus 215 ~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~------------------~~~~liDTPGi~~ 274 (316)
....+++++|.||||||||+|+|++...+.++++|+||++.. .+.+. ..+.++||||+..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 346789999999999999999999988668999999998742 23332 2478999999975
Q ss_pred C
Q 021210 275 M 275 (316)
Q Consensus 275 ~ 275 (316)
.
T Consensus 98 ~ 98 (392)
T 1ni3_A 98 G 98 (392)
T ss_dssp C
T ss_pred C
Confidence 3
No 80
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.69 E-value=1e-08 Score=84.99 Aligned_cols=100 Identities=14% Similarity=0.043 Sum_probs=68.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~ 172 (316)
+-++||+ .++.......+..+|++++|+|+.++.+.. ...+..++ .+.|+++|+||+|+.+....+++.+.+
T Consensus 55 ~~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 133 (171)
T 1upt_A 55 VWDLGGL-TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSL 133 (171)
T ss_dssp EEEECCC-GGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHH
T ss_pred EEECCCC-hhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHh
Confidence 4567887 334444456678999999999998764322 22333333 367999999999998654333343333
Q ss_pred H-----hcCceEEEeccccccchhhhHHHHHHh
Q 021210 173 A-----KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 173 ~-----~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
. ..+..++++||++|.|++++.+.+.+.
T Consensus 134 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 166 (171)
T 1upt_A 134 GLPALKDRKWQIFKTSATKGTGLDEAMEWLVET 166 (171)
T ss_dssp TGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CchhccCCceEEEECcCCCCcCHHHHHHHHHHH
Confidence 2 234578999999999999988876654
No 81
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.69 E-value=5.7e-08 Score=95.04 Aligned_cols=122 Identities=11% Similarity=0.068 Sum_probs=78.7
Q ss_pred hccccCCcceEEEecccc--ccccccch---------HHHHH-HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--
Q 021210 81 CDWADLDADLYYWTKSLR--PVQWYPGH---------IAKTE-KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG-- 146 (316)
Q Consensus 81 e~~~~~d~~~~~~~~~~~--~i~~~Pgh---------~~~~~-r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~-- 146 (316)
..+.+.|.....+...-. .+-++||+ .+++. ......++.+|++|+|+|+..+....+..+..++.
T Consensus 226 ~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~ 305 (456)
T 4dcu_A 226 VAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA 305 (456)
T ss_dssp ------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT
T ss_pred CCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHc
Confidence 344556654444433322 26678883 13332 23345789999999999999887766666665543
Q ss_pred CCCEEEEEEccCCCChHh--HHHHHHHHHhc-----CceEEEeccccccchhhhHHHHHHhhh
Q 021210 147 NRKRILVLNREDMISMAD--RNAWATYFAKQ-----GTKVIFSNGQLGMGTMKLSRLAKALAS 202 (316)
Q Consensus 147 ~k~~IlVlNK~DLv~~~~--~~~~~~~~~~~-----g~~vi~iSa~~g~gi~~L~~~L~~l~~ 202 (316)
++|+++|+||+|+.+..+ .++..+++.+. +..++++||++|.|+++|.+.+.+...
T Consensus 306 ~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~ 368 (456)
T 4dcu_A 306 GKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASE 368 (456)
T ss_dssp TCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred CCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHH
Confidence 789999999999986432 23333333332 367999999999999999888766543
No 82
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.67 E-value=1.7e-08 Score=95.46 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=27.8
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCccc-----ccCCCCC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----PAAPRPG 250 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~-----~vs~~pg 250 (316)
..+|+++|.+|||||||+|+|++.+.. .++..|+
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~ 69 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL 69 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCE
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccce
Confidence 358999999999999999999987754 4445565
No 83
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.67 E-value=2.2e-08 Score=84.98 Aligned_cols=101 Identities=10% Similarity=0.030 Sum_probs=67.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~ 172 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+ ..+..++ .+.|+++|+||+|+.+....++..+.+
T Consensus 64 i~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~ 142 (187)
T 1zj6_A 64 MWDIGGQ-ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFL 142 (187)
T ss_dssp EEECCC-----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHH
T ss_pred EEECCCC-HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHh
Confidence 5567887 4455555677899999999999987643221 2233332 367999999999997643333333333
Q ss_pred H-----hcCceEEEeccccccchhhhHHHHHHhh
Q 021210 173 A-----KQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 173 ~-----~~g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
. ..+..++.+||++|.|++++.+.+.+..
T Consensus 143 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 143 KLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176 (187)
T ss_dssp TGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred ChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHH
Confidence 2 2346789999999999999988776543
No 84
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.67 E-value=4.5e-08 Score=99.11 Aligned_cols=129 Identities=13% Similarity=0.039 Sum_probs=78.1
Q ss_pred CCCcchhhhhhccccCCcceE--EEec-c----ccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHH
Q 021210 71 NGSIEAYEEECDWADLDADLY--YWTK-S----LRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ 143 (316)
Q Consensus 71 ~~~~g~~~e~e~~~~~d~~~~--~~~~-~----~~~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~ 143 (316)
.+.|-...|++.++|++.... .|.. . .-.+-++||| .++..++...+..+|.+|+|+|+.++..........
T Consensus 41 ~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh-~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~ 119 (600)
T 2ywe_A 41 QLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH-VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFW 119 (600)
T ss_dssp ---------------CCCCSEEEEEECTTSCEEEEEEECCCCS-GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHH
T ss_pred cccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc-HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHH
Confidence 445666678888998876554 3432 1 1127789999 668888888999999999999999876543322211
Q ss_pred H--hCCCCEEEEEEccCCCChHhHHHHHHHHH-hcCc---eEEEeccccccchhhhHHHHHHhh
Q 021210 144 W--LGNRKRILVLNREDMISMADRNAWATYFA-KQGT---KVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 144 ~--l~~k~~IlVlNK~DLv~~~~~~~~~~~~~-~~g~---~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
. ..+.|+++|+||+|+.+... .+..+.+. ..+. +++++||++|.|+++|.+.+.+..
T Consensus 120 ~a~~~~ipiIvviNKiDl~~a~~-~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~l 182 (600)
T 2ywe_A 120 KAVEQDLVIIPVINKIDLPSADV-DRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRI 182 (600)
T ss_dssp HHHHTTCEEEEEEECTTSTTCCH-HHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHCCCCEEEEEeccCccccCH-HHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhc
Confidence 1 23789999999999975432 22223333 2343 489999999999999988766543
No 85
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.66 E-value=2e-08 Score=84.88 Aligned_cols=101 Identities=11% Similarity=0.023 Sum_probs=69.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~ 172 (316)
+-++||+ .++.......+..+|++++|+|+.++.+..+ ..+..++ .+.|+++|+||+|+.+....++..+.+
T Consensus 66 ~~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 144 (186)
T 1ksh_A 66 IWDVGGQ-KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEAL 144 (186)
T ss_dssp EEEECCS-HHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHT
T ss_pred EEECCCC-HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHh
Confidence 5568998 4555555667899999999999987643222 2233333 257999999999997654434443333
Q ss_pred H-----hcCceEEEeccccccchhhhHHHHHHhh
Q 021210 173 A-----KQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 173 ~-----~~g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
. ..+..++.+||++|.|++++.+.+.+..
T Consensus 145 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 145 ELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 178 (186)
T ss_dssp TGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 2 2346789999999999999888766543
No 86
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.66 E-value=2.9e-08 Score=81.91 Aligned_cols=59 Identities=24% Similarity=0.414 Sum_probs=44.9
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcc-cccCCCCCceeeEEEEEeCC---cEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~-~~vs~~pgtT~~~~~~~~~~---~~~liDTPGi~~ 274 (316)
..++|+++|.+|||||||+|+|.+... ....+.+|++.....+.... .+.++||||...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 67 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLER 67 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchh
Confidence 357899999999999999999998763 23455667776665555542 578999999853
No 87
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.66 E-value=4.4e-08 Score=96.80 Aligned_cols=88 Identities=17% Similarity=0.244 Sum_probs=66.4
Q ss_pred HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEeccccccchh
Q 021210 112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTM 191 (316)
Q Consensus 112 r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~ 191 (316)
+.....++.+|++|+|+|+.++.+..+..+.+.+.++|+++|+||+|+.+....++..+++ ..+.+++++||++|.|++
T Consensus 315 ~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~~~~~~~~~~~~-~~~~~~i~iSAktg~Gi~ 393 (482)
T 1xzp_A 315 ERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKL-GTDRHMVKISALKGEGLE 393 (482)
T ss_dssp HHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCCCCHHHHHHHH-TCSTTEEEEEGGGTCCHH
T ss_pred HHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccccccCHHHHHHHh-cCCCcEEEEECCCCCCHH
Confidence 4456788999999999999887765555666667789999999999997542223333322 233578999999999999
Q ss_pred hhHHHHHHh
Q 021210 192 KLSRLAKAL 200 (316)
Q Consensus 192 ~L~~~L~~l 200 (316)
+|.+.+.+.
T Consensus 394 eL~~~l~~~ 402 (482)
T 1xzp_A 394 KLEESIYRE 402 (482)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887664
No 88
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.65 E-value=6.8e-08 Score=83.80 Aligned_cols=98 Identities=14% Similarity=0.082 Sum_probs=70.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH---h------CCCCEEEEEEccCCCChHh--HHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW---L------GNRKRILVLNREDMISMAD--RNAW 168 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~---l------~~k~~IlVlNK~DLv~~~~--~~~~ 168 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+.. .+..+ + .+.|+++|+||+|+.+..+ .++.
T Consensus 88 l~Dt~G~-~~~~~~~~~~~~~~d~iilV~D~~~~~s~~--~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~ 164 (217)
T 2f7s_A 88 LWDTAGQ-ERFRSLTTAFFRDAMGFLLMFDLTSQQSFL--NVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQA 164 (217)
T ss_dssp EEEEESH-HHHHHHHHHHHTTCCEEEEEEETTCHHHHH--HHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHH
T ss_pred EEECCCc-HhHHhHHHHHhcCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHH
Confidence 5578998 567777778899999999999997653321 12222 2 3568999999999975322 2223
Q ss_pred HHHHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 169 ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 169 ~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
.++....+..++.+||++|.|++++.+.+.+.
T Consensus 165 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 196 (217)
T 2f7s_A 165 RELADKYGIPYFETSAATGQNVEKAVETLLDL 196 (217)
T ss_dssp HHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 33444567889999999999999998876654
No 89
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.65 E-value=2.8e-08 Score=83.14 Aligned_cols=100 Identities=9% Similarity=0.015 Sum_probs=64.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--H---HHHHHh-CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--P---LMDQWL-GNRKRILVLNREDMISMAD--RNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~---~i~~~l-~~k~~IlVlNK~DLv~~~~--~~~~~~~ 171 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+ . .+.... .+.|+++|+||+|+.+..+ .++..++
T Consensus 64 ~~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 142 (180)
T 2g6b_A 64 MWDTAGQ-ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKL 142 (180)
T ss_dssp EEECCCC---------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHH
T ss_pred EEeCCCc-HHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHH
Confidence 4467887 4555556677899999999999987543221 1 111112 3679999999999985321 2223334
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
....+..++++||++|.|++++.+.+...
T Consensus 143 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 171 (180)
T 2g6b_A 143 AKEYGLPFMETSAKTGLNVDLAFTAIAKE 171 (180)
T ss_dssp HHHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 44557789999999999999988776554
No 90
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.64 E-value=2e-08 Score=82.91 Aligned_cols=57 Identities=26% Similarity=0.158 Sum_probs=34.4
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCC--cEEEEeCCCccc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK--DLEFLDSPGIIP 274 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~--~~~liDTPGi~~ 274 (316)
++|+++|.+|||||||+|+|.+.....+++.+|+|........+. .+.++||||...
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 61 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 61 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC----
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCcc
Confidence 689999999999999999999887777788889888643322222 467999999754
No 91
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.64 E-value=3.7e-08 Score=82.55 Aligned_cols=100 Identities=9% Similarity=-0.093 Sum_probs=70.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhC--CCCEEEEEEccCCCChHh--HHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMISMAD--RNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~--~k~~IlVlNK~DLv~~~~--~~~~~~ 170 (316)
+-++||+ .++.......+..+|++++|+|+.++.+... ..+..... +.|+++|+||+|+.+..+ .++..+
T Consensus 70 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 148 (187)
T 2a9k_A 70 ILDTAGQ-EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN 148 (187)
T ss_dssp EEECCCT-TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred EEECCCC-cccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHH
Confidence 5577887 3455556677899999999999986532111 12222222 679999999999975322 234445
Q ss_pred HHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
++...+..++++||++|.|++++.+.+.+.
T Consensus 149 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 178 (187)
T 2a9k_A 149 RAEQWNVNYVETSAKTRANVDKVFFDLMRE 178 (187)
T ss_dssp HHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHcCCeEEEeCCCCCCCHHHHHHHHHHH
Confidence 556667889999999999999988876554
No 92
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.64 E-value=3e-08 Score=81.25 Aligned_cols=97 Identities=18% Similarity=0.113 Sum_probs=69.2
Q ss_pred cccccchHH------HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHHH
Q 021210 100 VQWYPGHIA------KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~------~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~~ 171 (316)
+-++||+.. ...+.....+..+|++++|+|+.++.+..+..+..++. +.|+++|+||+|+.+..+ +. +.
T Consensus 53 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--~~-~~ 129 (161)
T 2dyk_A 53 LVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHEL--YL-GP 129 (161)
T ss_dssp EEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGG--GC-GG
T ss_pred EEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchH--hH-HH
Confidence 445666632 24455567789999999999999876655555555554 789999999999976532 11 12
Q ss_pred HHhcCc-eEEEeccccccchhhhHHHHHH
Q 021210 172 FAKQGT-KVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 172 ~~~~g~-~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
+.+.+. .++++||++|.|++++.+.+.+
T Consensus 130 ~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 158 (161)
T 2dyk_A 130 LYGLGFGDPIPTSSEHARGLEELLEAIWE 158 (161)
T ss_dssp GGGGSSCSCEECBTTTTBSHHHHHHHHHH
T ss_pred HHhCCCCCeEEEecccCCChHHHHHHHHH
Confidence 234565 6899999999999998877654
No 93
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.63 E-value=3.6e-08 Score=82.07 Aligned_cols=99 Identities=13% Similarity=0.054 Sum_probs=69.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-H----HHHHh-CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWL-GNRKRILVLNREDMISMAD--RNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~----i~~~l-~~k~~IlVlNK~DLv~~~~--~~~~~~~ 171 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+. . +.... .+.|+++|+||+|+.+..+ .++..++
T Consensus 68 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 146 (179)
T 1z0f_A 68 IWDTAGQ-ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQF 146 (179)
T ss_dssp EEECTTG-GGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EEECCCC-hHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 4567887 45556677789999999999999875432211 1 11111 3678999999999964322 2334445
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHH
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
....+..++++||++|.|++++.+.+.+
T Consensus 147 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 174 (179)
T 1z0f_A 147 AEENGLLFLEASAKTGENVEDAFLEAAK 174 (179)
T ss_dssp HHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 5566788999999999999998876544
No 94
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.63 E-value=2.6e-08 Score=83.34 Aligned_cols=101 Identities=12% Similarity=0.020 Sum_probs=69.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HH-HHHHh----CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PL-MDQWL----GNRKRILVLNREDMISMAD--RNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-~~-i~~~l----~~k~~IlVlNK~DLv~~~~--~~~~~~~ 171 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+... .. +..+. .+.|+++|+||+|+.+..+ .++..++
T Consensus 65 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~ 143 (181)
T 2efe_B 65 IWDTAGQ-ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTY 143 (181)
T ss_dssp EEECCCS-GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHH
T ss_pred EEeCCCC-hhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHH
Confidence 5567887 4455556677899999999999986543211 11 11111 2568999999999975432 2334444
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
....+..++++||++|.|++++.+.+.+..
T Consensus 144 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 144 AQENGLFFMETSAKTATNVKEIFYEIARRL 173 (181)
T ss_dssp HHHTTCEEEECCSSSCTTHHHHHHHHHHTC
T ss_pred HHHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 556678899999999999999988776543
No 95
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.63 E-value=7.6e-08 Score=96.15 Aligned_cols=88 Identities=14% Similarity=0.025 Sum_probs=65.7
Q ss_pred cchhhhhhccccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCC
Q 021210 74 IEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK 149 (316)
Q Consensus 74 ~g~~~e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~ 149 (316)
|-...|++.+++++.....+...... +-++||| .++...+...+..+|.+|+|+|+..+.......+...+ .+.|
T Consensus 58 d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~-~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iP 136 (528)
T 3tr5_A 58 DWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH-ADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTP 136 (528)
T ss_dssp HHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS-TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCC
T ss_pred ccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc-hhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC
Confidence 33345667788888877766544333 7789999 66777788889999999999999987765554444443 2689
Q ss_pred EEEEEEccCCCCh
Q 021210 150 RILVLNREDMISM 162 (316)
Q Consensus 150 ~IlVlNK~DLv~~ 162 (316)
+++|+||+|+...
T Consensus 137 iivviNK~Dl~~~ 149 (528)
T 3tr5_A 137 IMTFINKMDRDTR 149 (528)
T ss_dssp EEEEEECTTSCCS
T ss_pred EEEEEeCCCCccc
Confidence 9999999999743
No 96
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.63 E-value=3.2e-08 Score=85.32 Aligned_cols=101 Identities=14% Similarity=0.011 Sum_probs=67.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH---hC-CCCEEEEEEccCCCChHh-HHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---LG-NRKRILVLNREDMISMAD-RNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~---l~-~k~~IlVlNK~DLv~~~~-~~~~~~~~ 172 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+ ..+..+ .. +.|+++|+||+|+..... .+...++.
T Consensus 73 l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 151 (213)
T 3cph_A 73 LWDTAGQ-ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALA 151 (213)
T ss_dssp EECCTTG-GGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHH
T ss_pred EEeCCCc-HHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHH
Confidence 5567887 3444455677899999999999976532211 111111 12 578999999999953321 12223334
Q ss_pred HhcCceEEEeccccccchhhhHHHHHHhh
Q 021210 173 AKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 173 ~~~g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
...+..++++||++|.|++++.+.+....
T Consensus 152 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 152 KELGIPFIESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp HHHTCCEEECBTTTTBSSHHHHHHHHHHH
T ss_pred HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 44577899999999999999988776543
No 97
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.61 E-value=5e-08 Score=90.63 Aligned_cols=91 Identities=18% Similarity=0.095 Sum_probs=66.8
Q ss_pred HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC----CCCEEEEEEccCCCChHh-HHHHHHHHHhcCceEEEecc
Q 021210 110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNG 184 (316)
Q Consensus 110 ~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~----~k~~IlVlNK~DLv~~~~-~~~~~~~~~~~g~~vi~iSa 184 (316)
+.+.....+..+|++|+|+|+.++.+..+..+.+.+. +.|+++|+||+|+.+... ..+..+.+ .....++++||
T Consensus 76 ~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~iSA 154 (301)
T 1wf3_A 76 MDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL-LPEAEPRMLSA 154 (301)
T ss_dssp HHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT-STTSEEEECCT
T ss_pred HHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh-cCcCcEEEEeC
Confidence 4455667789999999999999877655555544443 689999999999986544 33333333 11246899999
Q ss_pred ccccchhhhHHHHHHhh
Q 021210 185 QLGMGTMKLSRLAKALA 201 (316)
Q Consensus 185 ~~g~gi~~L~~~L~~l~ 201 (316)
++|.|+++|.+.+....
T Consensus 155 ~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 155 LDERQVAELKADLLALM 171 (301)
T ss_dssp TCHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999988876654
No 98
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.61 E-value=3.7e-08 Score=84.46 Aligned_cols=99 Identities=13% Similarity=0.041 Sum_probs=64.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhC-----CCCEEEEEEccCCCChHhHHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l~-----~k~~IlVlNK~DLv~~~~~~~~~~~~ 172 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+.. ...+..++. +.|+++|+||+|+.+....+++.+.+
T Consensus 77 i~Dt~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~ 155 (192)
T 2b6h_A 77 VWDVGGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKL 155 (192)
T ss_dssp EEECC------CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHT
T ss_pred EEECCCC-HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHh
Confidence 5678988 455555567789999999999998764221 122333332 67999999999997653333443333
Q ss_pred H-----hcCceEEEeccccccchhhhHHHHHH
Q 021210 173 A-----KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 173 ~-----~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
. ..+..++.+||++|.|++++.+.+.+
T Consensus 156 ~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 187 (192)
T 2b6h_A 156 GLQHLRSRTWYVQATCATQGTGLYDGLDWLSH 187 (192)
T ss_dssp TGGGCSSCCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred CcccccCCceEEEECcCCCcCCHHHHHHHHHH
Confidence 2 12356899999999999998877654
No 99
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.61 E-value=3.2e-08 Score=91.23 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=23.7
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRM 242 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~ 242 (316)
..+|+++|.+|+|||||+|+|++...
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 45799999999999999999998875
No 100
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.60 E-value=4.3e-08 Score=80.38 Aligned_cols=100 Identities=13% Similarity=-0.074 Sum_probs=67.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh--CCCCEEEEEEccCCCChHh--HHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL--GNRKRILVLNREDMISMAD--RNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~ 170 (316)
+-++||+ .++.......+..+|.+++|+|+.++.+..+ ..+.... .+.|+++|+||+|+.+..+ ..+..+
T Consensus 55 l~D~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 133 (167)
T 1kao_A 55 ILDTAGT-EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRA 133 (167)
T ss_dssp EEECCCT-TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred EEECCCc-hhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHH
Confidence 4567887 3445555667899999999999986532211 1122222 2689999999999875422 222333
Q ss_pred HHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
...+.+..++++||++|.|++++.+.+.+.
T Consensus 134 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 163 (167)
T 1kao_A 134 LAEEWGCPFMETSAKSKTMVDELFAEIVRQ 163 (167)
T ss_dssp HHHHHTSCEEEECTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCEEEecCCCCcCHHHHHHHHHHH
Confidence 444557789999999999999988876543
No 101
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.59 E-value=1.5e-08 Score=85.61 Aligned_cols=98 Identities=10% Similarity=0.039 Sum_probs=66.0
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~ 172 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+ ..+..++ .+.|+++|+||+|+.+....+++.+.+
T Consensus 69 i~Dt~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~ 147 (181)
T 2h17_A 69 MWDIGGQ-ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFL 147 (181)
T ss_dssp EEEESSS-GGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHT
T ss_pred EEECCCC-HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHh
Confidence 5567887 3444444566899999999999987643221 1233333 367899999999997643233333332
Q ss_pred H-----hcCceEEEeccccccchhhhHHHHH
Q 021210 173 A-----KQGTKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 173 ~-----~~g~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
. ..+..++.+||++|.|++++.+.+.
T Consensus 148 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 178 (181)
T 2h17_A 148 KLTSIKDHQWHIQACCALTGEGLCQGLEWMM 178 (181)
T ss_dssp TGGGCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred CcccccCCceEEEEccCCCCcCHHHHHHHHH
Confidence 1 2235789999999999999887654
No 102
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.59 E-value=1.5e-07 Score=91.64 Aligned_cols=122 Identities=11% Similarity=0.058 Sum_probs=75.9
Q ss_pred hccccCCcceEEEecccc--ccccccchH---------HHHHH-HHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--C
Q 021210 81 CDWADLDADLYYWTKSLR--PVQWYPGHI---------AKTEK-ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--G 146 (316)
Q Consensus 81 e~~~~~d~~~~~~~~~~~--~i~~~Pgh~---------~~~~r-~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~ 146 (316)
..+.|.|.....+...-. .+-++||+. +++.. .....++.+|++|+|+|+..+.+..+..+...+ .
T Consensus 206 ~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~ 285 (436)
T 2hjg_A 206 VAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA 285 (436)
T ss_dssp --------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT
T ss_pred CCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHc
Confidence 344555554443432222 266788872 22221 233578999999999999998776665555544 3
Q ss_pred CCCEEEEEEccCCCChHh--HHHHHHHHH----h-cCceEEEeccccccchhhhHHHHHHhhh
Q 021210 147 NRKRILVLNREDMISMAD--RNAWATYFA----K-QGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (316)
Q Consensus 147 ~k~~IlVlNK~DLv~~~~--~~~~~~~~~----~-~g~~vi~iSa~~g~gi~~L~~~L~~l~~ 202 (316)
++++++|+||+|+.+..+ .++..+.+. . .+.+++++||++|.|+++|.+.+.+...
T Consensus 286 ~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 286 GKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASE 348 (436)
T ss_dssp TCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred CCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHH
Confidence 789999999999986433 222322222 1 1367899999999999999887766543
No 103
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.58 E-value=7.7e-08 Score=79.37 Aligned_cols=101 Identities=12% Similarity=0.006 Sum_probs=67.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHH---HHHHh---CCCCEEEEEEccCCCChHhH--HHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPL---MDQWL---GNRKRILVLNREDMISMADR--NAWA 169 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~---i~~~l---~~k~~IlVlNK~DLv~~~~~--~~~~ 169 (316)
+-++||+ .++.......+..+|++++|+|+.++.+.. ... +.+.. .+.|+++|+||+|+.+..+. .+..
T Consensus 55 ~~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~ 133 (172)
T 2erx_A 55 ITDTTGS-HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAE 133 (172)
T ss_dssp EEECCSC-SSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHH
T ss_pred EEECCCc-hhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHH
Confidence 4567887 344455566788999999999998653221 111 22221 26899999999999754321 1222
Q ss_pred HHHHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
+.....+..++++||++|.|++++.+.+.+..
T Consensus 134 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 134 ALARTWKCAFMETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp HHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred HHHHHhCCeEEEecCCCCcCHHHHHHHHHHHH
Confidence 33344567899999999999999988876654
No 104
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.58 E-value=3.1e-08 Score=81.65 Aligned_cols=100 Identities=11% Similarity=-0.005 Sum_probs=67.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh----CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMAD--RNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l----~~k~~IlVlNK~DLv~~~~--~~~~~~~ 171 (316)
+-++||+ .++.......+..+|++++|+|+.++.+..+ ..+..+. ...|+++|.||+|+.+..+ .++..++
T Consensus 59 ~~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~ 137 (170)
T 1r2q_A 59 IWDTAGQ-ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSY 137 (170)
T ss_dssp EEEECCS-GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EEeCCCc-HHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHH
Confidence 4467887 4455556677899999999999986532211 1111211 2567889999999965322 2333444
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
....+..++.+||++|.|+++|.+.+.+.
T Consensus 138 ~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~ 166 (170)
T 1r2q_A 138 ADDNSLLFMETSAKTSMNVNEIFMAIAKK 166 (170)
T ss_dssp HHHTTCEEEECCTTTCTTHHHHHHHHHHT
T ss_pred HHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 45567889999999999999988876543
No 105
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.57 E-value=4.9e-08 Score=81.21 Aligned_cols=100 Identities=15% Similarity=0.085 Sum_probs=68.5
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH---h-CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---L-GNRKRILVLNREDMISMAD--RNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~---l-~~k~~IlVlNK~DLv~~~~--~~~~~~~ 171 (316)
+-++||+ .++.......+..+|++++|+|+.++.+... ..+..+ . .+.|+++|+||+|+.+..+ .++..++
T Consensus 67 ~~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 145 (179)
T 2y8e_A 67 LWDTAGQ-ERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERK 145 (179)
T ss_dssp EEEECCS-GGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EEECCCc-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHH
Confidence 4567887 4455556677899999999999976532111 111111 1 2678999999999975432 2333444
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
....+..++.+||++|.|++++.+.+.+.
T Consensus 146 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 174 (179)
T 2y8e_A 146 AKELNVMFIETSAKAGYNVKQLFRRVAAA 174 (179)
T ss_dssp HHHHTCEEEEEBTTTTBSHHHHHHHHHHT
T ss_pred HHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 55567889999999999999988876654
No 106
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.57 E-value=6.8e-08 Score=79.54 Aligned_cols=57 Identities=23% Similarity=0.415 Sum_probs=41.5
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCccc-ccCCCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~-~vs~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (316)
.++|+++|.+|||||||+|+|.+.... ...+..|++.....+..+. .+.++||||..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 63 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCCh
Confidence 468999999999999999999976532 2334445555555555543 57899999965
No 107
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.56 E-value=9.5e-08 Score=78.26 Aligned_cols=55 Identities=22% Similarity=0.250 Sum_probs=37.7
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeCC---cEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~~---~~~liDTPGi~ 273 (316)
.++|+++|.+|||||||+|+|.+..... ....++.+ ...+..+. .+.++||||..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 62 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 62 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcc--cCCCCcceeEEEEEEECCEEEEEEEEECCCch
Confidence 4789999999999999999999765322 22233332 22333332 37899999965
No 108
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.56 E-value=2e-08 Score=83.74 Aligned_cols=102 Identities=15% Similarity=0.058 Sum_probs=68.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhCCCCEEEEEEccCCCChHh--HHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLGNRKRILVLNREDMISMAD--RNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~~k~~IlVlNK~DLv~~~~--~~~~~~~~ 172 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+. .+.....+.|+++|+||+|+.+... ..+..+..
T Consensus 62 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 140 (181)
T 3tw8_B 62 IWDTAGQ-ERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFA 140 (181)
T ss_dssp EEEETTG-GGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred EEcCCCc-hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHH
Confidence 4467886 33444445567899999999999875322211 1111223579999999999875432 22333444
Q ss_pred HhcCceEEEeccccccchhhhHHHHHHhhh
Q 021210 173 AKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (316)
Q Consensus 173 ~~~g~~vi~iSa~~g~gi~~L~~~L~~l~~ 202 (316)
...+..++.+||++|.|++++.+.+.+...
T Consensus 141 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 141 GQMGIQLFETSAKENVNVEEMFNCITELVL 170 (181)
T ss_dssp HHHTCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 556788999999999999999887766543
No 109
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.56 E-value=7e-08 Score=81.13 Aligned_cols=100 Identities=16% Similarity=0.060 Sum_probs=67.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--H---HHHHHh--CCCCEEEEEEccCCCChHh--HHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--P---LMDQWL--GNRKRILVLNREDMISMAD--RNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~---~i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~ 170 (316)
+-++||+ .++.......+..+|++++|+|+.++.+..+ . .+.... .+.|+++|+||+|+.+..+ .++..+
T Consensus 70 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~ 148 (183)
T 3kkq_A 70 VLDTAGQ-EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE 148 (183)
T ss_dssp EEECCSC-GGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHH
T ss_pred EEECCCc-hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHH
Confidence 3567887 4455555677889999999999987532211 1 122222 2679999999999975321 222333
Q ss_pred HHHhcCceEEEeccc-cccchhhhHHHHHHh
Q 021210 171 YFAKQGTKVIFSNGQ-LGMGTMKLSRLAKAL 200 (316)
Q Consensus 171 ~~~~~g~~vi~iSa~-~g~gi~~L~~~L~~l 200 (316)
.....+..++.+||+ +|.|++++.+.+.+.
T Consensus 149 ~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~ 179 (183)
T 3kkq_A 149 MATKYNIPYIETSAKDPPLNVDKTFHDLVRV 179 (183)
T ss_dssp HHHHHTCCEEEEBCSSSCBSHHHHHHHHHHH
T ss_pred HHHHhCCeEEEeccCCCCCCHHHHHHHHHHH
Confidence 444556789999999 999999988776543
No 110
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.55 E-value=9.5e-08 Score=81.63 Aligned_cols=99 Identities=11% Similarity=0.074 Sum_probs=67.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh-CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-GNRKRILVLNREDMISMAD--RNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l-~~k~~IlVlNK~DLv~~~~--~~~~~~~ 171 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+. .+.... .+.|+++|+||+|+.+..+ .++..++
T Consensus 79 l~Dt~G~-~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~ 157 (192)
T 2il1_A 79 IWDTAGQ-ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKF 157 (192)
T ss_dssp EEEECCS-GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EEeCCCc-HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 4577887 45666667788999999999999875433221 111111 2678999999999975322 1222233
Q ss_pred HHhc-CceEEEeccccccchhhhHHHHHH
Q 021210 172 FAKQ-GTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 172 ~~~~-g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
.... +..++.+||++|.|++++.+.+.+
T Consensus 158 ~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 186 (192)
T 2il1_A 158 AQQITGMRFCEASAKDNFNVDEIFLKLVD 186 (192)
T ss_dssp HHTSTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHhcCCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 3332 578899999999999998877654
No 111
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.55 E-value=7e-08 Score=81.67 Aligned_cols=100 Identities=15% Similarity=0.062 Sum_probs=68.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh--CCCCEEEEEEccCCCChH-hHHHHHHHHHh
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL--GNRKRILVLNREDMISMA-DRNAWATYFAK 174 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~l--~~k~~IlVlNK~DLv~~~-~~~~~~~~~~~ 174 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+. .+..+. ...|+++|+||+|+.... ..++..+++.+
T Consensus 97 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~ 175 (208)
T 3clv_A 97 IWDTAGQ-ERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQD 175 (208)
T ss_dssp EEECTTG-GGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHHHHH
T ss_pred EEECCCc-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHHHHH
Confidence 4456887 44555666788999999999999876432221 111121 258999999999942211 23445555666
Q ss_pred cCceEEEeccccccchhhhHHHHHHh
Q 021210 175 QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 175 ~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
.+..++++||++|.|++++.+.+...
T Consensus 176 ~~~~~~~~Sa~~~~~i~~l~~~l~~~ 201 (208)
T 3clv_A 176 NNLLFIQTSAKTGTNIKNIFYMLAEE 201 (208)
T ss_dssp TTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCCHHHHHHHHHHH
Confidence 77889999999999999988876554
No 112
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.54 E-value=2.4e-08 Score=83.93 Aligned_cols=101 Identities=12% Similarity=0.013 Sum_probs=65.0
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~ 172 (316)
+-++||+ .++.......+..+|++++|+|+.++.+..+ ..+..++ .+.|+++|+||+|+.+....+++.+.+
T Consensus 66 i~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~ 144 (183)
T 1moz_A 66 VWDLGGQ-TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKEL 144 (183)
T ss_dssp EEEEC-----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHT
T ss_pred EEECCCC-HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHh
Confidence 4567777 3343444566789999999999987643221 2233333 357999999999997643333343333
Q ss_pred Hh-----cCceEEEeccccccchhhhHHHHHHhh
Q 021210 173 AK-----QGTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 173 ~~-----~g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
.. .+..++.+||++|.|++++.+.+.+..
T Consensus 145 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 145 NLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp TTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred CcccccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 21 234689999999999999988776543
No 113
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.54 E-value=1.3e-07 Score=80.14 Aligned_cols=100 Identities=14% Similarity=0.081 Sum_probs=67.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~ 172 (316)
+-++||+ .++.......+..+|++++|+|+.++.+..+ ..+..++ .+.|+++|.||+|+.+....++..+.+
T Consensus 64 i~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~ 142 (181)
T 1fzq_A 64 VWDIGGQ-RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGL 142 (181)
T ss_dssp EEECSSC-GGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHT
T ss_pred EEECCCC-HHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHh
Confidence 4567887 4455555677899999999999986533221 2233333 257999999999997653333333332
Q ss_pred H-----hcCceEEEeccccccchhhhHHHHHHh
Q 021210 173 A-----KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 173 ~-----~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
. ..+..++.+||++|.|++++.+.+.+.
T Consensus 143 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (181)
T 1fzq_A 143 NLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN 175 (181)
T ss_dssp TGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred CchhccCCceEEEEccCCCCCCHHHHHHHHHHH
Confidence 1 123568899999999999988876554
No 114
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.54 E-value=9.4e-08 Score=98.47 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=32.7
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGV 251 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgt 251 (316)
.++|+|+|.+|+|||||+|+|++.....++..|+|
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T 103 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCT 103 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCc
Confidence 57899999999999999999999988888888888
No 115
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.54 E-value=4.5e-08 Score=80.59 Aligned_cols=99 Identities=9% Similarity=-0.003 Sum_probs=67.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HH---HHHHhCCCCEEEEEEccCCCChHh--HHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PL---MDQWLGNRKRILVLNREDMISMAD--RNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~---i~~~l~~k~~IlVlNK~DLv~~~~--~~~~~~~~ 172 (316)
+-++||+ .++.......+..+|++++|+|+.++.+..+ .. +.....+.|+++|+||+|+.+..+ .++..+..
T Consensus 58 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 136 (168)
T 1z2a_A 58 LWDTAGQ-EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLA 136 (168)
T ss_dssp EECCTTG-GGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHH
T ss_pred EEcCCCc-HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHH
Confidence 4467887 3344445667889999999999987542211 11 112224789999999999975322 23333444
Q ss_pred HhcCceEEEeccccccchhhhHHHHHH
Q 021210 173 AKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 173 ~~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
...+..++++||++|.|++++.+.+.+
T Consensus 137 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 163 (168)
T 1z2a_A 137 KRLKLRFYRTSVKEDLNVSEVFKYLAE 163 (168)
T ss_dssp HHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred HHcCCeEEEEecCCCCCHHHHHHHHHH
Confidence 556788999999999999998877654
No 116
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.54 E-value=4.6e-08 Score=83.11 Aligned_cols=82 Identities=20% Similarity=0.173 Sum_probs=47.1
Q ss_pred cccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccc--cCCCCCceeeEEEEEeCCc
Q 021210 186 LGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCP--AAPRPGVTRVLKWVRFGKD 263 (316)
Q Consensus 186 ~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~--vs~~pgtT~~~~~~~~~~~ 263 (316)
....+..+.+.+.++...... +.....++|+++|.+|||||||+|+|.+..... ++..|++|.+. ....
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~~-----~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----~~~~ 92 (193)
T 2ged_A 22 NKRKISQWREWIDEKLGGGSG-----GGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSG 92 (193)
T ss_dssp TTTBCHHHHHHHHHHC-------------CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----CCTT
T ss_pred HHHHHHHHHHHHHHHHHhhcC-----CCCCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----cCCe
Confidence 344566666666555433221 112345789999999999999999999865322 23445555543 3456
Q ss_pred EEEEeCCCcccCC
Q 021210 264 LEFLDSPGIIPMR 276 (316)
Q Consensus 264 ~~liDTPGi~~~~ 276 (316)
+.++||||.....
T Consensus 93 ~~l~Dt~G~~~~~ 105 (193)
T 2ged_A 93 VTLVDFPGHVKLR 105 (193)
T ss_dssp CSEEEETTCCBSS
T ss_pred EEEEECCCCchHH
Confidence 8899999997543
No 117
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.54 E-value=1.2e-07 Score=79.26 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=42.5
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeCC---cEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~~---~~~liDTPGi~ 273 (316)
..++|+++|.+|||||||+|+|.+.........|.++.+.. .+..+. .+.++||||..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 71 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 46799999999999999999999876544445565555543 233433 57899999964
No 118
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.54 E-value=1.2e-07 Score=80.97 Aligned_cols=100 Identities=9% Similarity=-0.093 Sum_probs=69.5
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhC--CCCEEEEEEccCCCChHh--HHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMISMAD--RNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~--~k~~IlVlNK~DLv~~~~--~~~~~~ 170 (316)
+-++||+ .++.......+..+|++++|+|+.++.+... ..+..... +.|+++|+||+|+.+..+ .++..+
T Consensus 66 l~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 144 (206)
T 2bov_A 66 ILDTAGQ-EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN 144 (206)
T ss_dssp EEECCCT-TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred EEcCCCh-hhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHH
Confidence 4567887 4455556677899999999999986532211 11222222 679999999999975322 233444
Q ss_pred HHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
+....+..++++||++|.|++++.+.+...
T Consensus 145 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 174 (206)
T 2bov_A 145 RAEQWNVNYVETSAKTRANVDKVFFDLMRE 174 (206)
T ss_dssp HHHHHTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred HHHHhCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 455567889999999999999988776554
No 119
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.53 E-value=7.6e-08 Score=79.36 Aligned_cols=100 Identities=9% Similarity=-0.067 Sum_probs=67.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh-----CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMISMAD--RNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-~~i~~~l-----~~k~~IlVlNK~DLv~~~~--~~~~~~~ 171 (316)
+-++||+ .++.......+..+|++++|+|+.++.+..+ ..+...+ ...|+++|.||+|+.+..+ .+...++
T Consensus 59 ~~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~ 137 (170)
T 1z0j_A 59 IWDTAGL-ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDY 137 (170)
T ss_dssp EEEECCS-GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EEcCCCc-hhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHH
Confidence 4567887 4455556677899999999999987543222 1111111 2567899999999975432 1222333
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
....+..++++||++|.|+++|.+.+.+.
T Consensus 138 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 166 (170)
T 1z0j_A 138 ADSIHAIFVETSAKNAININELFIEISRR 166 (170)
T ss_dssp HHHTTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHcCCEEEEEeCCCCcCHHHHHHHHHHH
Confidence 44567889999999999999988876543
No 120
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.53 E-value=9.4e-08 Score=78.58 Aligned_cols=99 Identities=9% Similarity=-0.094 Sum_probs=65.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--H---HHHHHh--CCCCEEEEEEccCCCChHh--HHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--P---LMDQWL--GNRKRILVLNREDMISMAD--RNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~---~i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~ 170 (316)
+-++||+ .++.......+..+|++++|+|+.++.+..+ . .+.... .+.|+++|+||+|+.+..+ .++..+
T Consensus 55 l~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 133 (167)
T 1c1y_A 55 ILDTAGT-EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN 133 (167)
T ss_dssp EEEECSS-CSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred EEECCCh-HHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHH
Confidence 3456776 3344445567889999999999986532111 1 122222 2689999999999975322 122333
Q ss_pred HHHhc-CceEEEeccccccchhhhHHHHHH
Q 021210 171 YFAKQ-GTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 171 ~~~~~-g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
+.... +..++++||++|.|++++.+.+.+
T Consensus 134 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 163 (167)
T 1c1y_A 134 LARQWCNCAFLESSAKSKINVNEIFYDLVR 163 (167)
T ss_dssp HHHHTTSCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHccCCcEEEecCCCCCCHHHHHHHHHH
Confidence 33444 578999999999999998887654
No 121
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.53 E-value=8.8e-08 Score=81.74 Aligned_cols=58 Identities=26% Similarity=0.434 Sum_probs=45.4
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcc-cccCCCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~-~~vs~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (316)
..++|+++|.+|||||||+|+|.+... ....+.+|+|.....+..+. .+.++||||..
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 83 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSG
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCch
Confidence 357899999999999999999997763 24566778877766555532 57899999964
No 122
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.52 E-value=3.1e-08 Score=82.64 Aligned_cols=57 Identities=26% Similarity=0.455 Sum_probs=42.5
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEe-CCcEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~-~~~~~liDTPGi~ 273 (316)
...+|+++|.+|||||||+|+|.+.. ......|++|.+.. .+.. +..+.++||||..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 66 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK-VTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHE 66 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC-SSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc-cccCCCCceeEeeeEEEEEeCCceEEEEECCCCH
Confidence 45789999999999999999999765 34455666665542 2233 4568899999974
No 123
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.52 E-value=5.9e-08 Score=90.10 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=46.5
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe----CCcEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~----~~~~~liDTPGi~~ 274 (316)
..||+++|.+|||||||+|+|++.....+++.+|+|.+.....+ +..+.++||||...
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~ 64 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV 64 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHH
Confidence 46899999999999999999998765667778999988654332 23578999999753
No 124
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.52 E-value=6.6e-08 Score=79.61 Aligned_cols=99 Identities=12% Similarity=0.039 Sum_probs=66.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----CCCCEEEEEEccCCCCh---Hh--HHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISM---AD--RNAW 168 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~l----~~k~~IlVlNK~DLv~~---~~--~~~~ 168 (316)
+-++||+ .++.......+..+|++++|+|+.++.+..+. .+..+. .+.|+++|+||+|+.+. .+ .+..
T Consensus 56 ~~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~ 134 (170)
T 1ek0_A 56 IWDTAGQ-ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEG 134 (170)
T ss_dssp EEEECCS-GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHH
T ss_pred EEECCCC-hhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHH
Confidence 4567887 34555566778999999999999875332211 111111 26789999999999753 11 1222
Q ss_pred HHHHHhcCceEEEeccccccchhhhHHHHHH
Q 021210 169 ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 169 ~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
.+.....+..++++||++|.|++++.+.+.+
T Consensus 135 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 165 (170)
T 1ek0_A 135 EKLAEEKGLLFFETSAKTGENVNDVFLGIGE 165 (170)
T ss_dssp HHHHHHHTCEEEECCTTTCTTHHHHHHHHHT
T ss_pred HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 2334455788999999999999998877654
No 125
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.52 E-value=3.5e-08 Score=82.62 Aligned_cols=99 Identities=11% Similarity=-0.068 Sum_probs=64.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH------HHHHHhCCCCEEEEEEccCCCChHhH--------
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDMISMADR-------- 165 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~------~i~~~l~~k~~IlVlNK~DLv~~~~~-------- 165 (316)
+-++||+ .++.......+..+|++++|+|+.++.+..+. .+.....+.|+++|+||+|+.+..+.
T Consensus 60 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 138 (182)
T 3bwd_D 60 LWDTAGQ-EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAV 138 (182)
T ss_dssp EECCCC--CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CC
T ss_pred EEECCCC-hhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCC
Confidence 4456776 33333444567889999999999765432211 12222236899999999998654321
Q ss_pred ----HHHHHHHHhcCc-eEEEeccccccchhhhHHHHHH
Q 021210 166 ----NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 166 ----~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
++..++....+. .++.+||++|.|++++.+.+.+
T Consensus 139 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 177 (182)
T 3bwd_D 139 PITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIR 177 (182)
T ss_dssp CCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 222333344564 7899999999999998877654
No 126
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.52 E-value=1.1e-07 Score=78.26 Aligned_cols=59 Identities=24% Similarity=0.318 Sum_probs=42.4
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccc-cCCCCCceeeEEEEEeCC---cEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~-vs~~pgtT~~~~~~~~~~---~~~liDTPGi~~ 274 (316)
..++|+++|.+|||||||+|+|.+..... ..+..|++.....+..+. .+.++||||...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 67 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 35789999999999999999999765332 234445555555455433 578999999753
No 127
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.52 E-value=2.8e-08 Score=95.00 Aligned_cols=57 Identities=39% Similarity=0.498 Sum_probs=44.9
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEE----------------------eCCcEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVR----------------------FGKDLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~----------------------~~~~~~liDTPGi~ 273 (316)
++|+++|.||||||||+|+|++.. ..++++|++|.+. .... .+..+.++||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 468999999999999999999875 5788899988763 1221 23468999999998
Q ss_pred cC
Q 021210 274 PM 275 (316)
Q Consensus 274 ~~ 275 (316)
..
T Consensus 81 ~~ 82 (368)
T 2dby_A 81 KG 82 (368)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 128
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.52 E-value=6.4e-08 Score=82.62 Aligned_cols=101 Identities=12% Similarity=-0.021 Sum_probs=69.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~i~~~l-----~~k~~IlVlNK~DLv~~~~--~~~~~~~ 171 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+.... .+...+ .+.|+++|+||+|+.+..+ .++..++
T Consensus 76 i~Dt~G~-~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~ 154 (192)
T 2fg5_A 76 IWDTAGQ-ERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEY 154 (192)
T ss_dssp EEEECCS-GGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EEcCCCc-hhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 4567887 44555566778999999999999875432111 111111 2678999999999974321 2344455
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
..+.+..++++||++|.|+++|.+.+.+..
T Consensus 155 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 155 AESIGAIVVETSAKNAINIEELFQGISRQI 184 (192)
T ss_dssp HHTTTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred HHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 556678899999999999999988776543
No 129
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.52 E-value=1.9e-07 Score=78.39 Aligned_cols=101 Identities=11% Similarity=-0.037 Sum_probs=66.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh--CCCCEEEEEEccCCCChHhH-HHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL--GNRKRILVLNREDMISMADR-NAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l--~~k~~IlVlNK~DLv~~~~~-~~~~~~ 171 (316)
+-++||+ .++.......+..+|++++|+|+.++.+... ..+.... .+.|+++|+||+|+.+.... +...+.
T Consensus 56 i~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~ 134 (189)
T 4dsu_A 56 ILDTAGQ-EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDL 134 (189)
T ss_dssp EEECCCC----CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHH
T ss_pred EEECCCc-HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHH
Confidence 3567887 4555556677899999999999986532211 1112222 26799999999999754322 222333
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
....+..++++||++|.|++++.+.+.+..
T Consensus 135 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164 (189)
T ss_dssp HHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 345567899999999999999887766543
No 130
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.51 E-value=7.7e-08 Score=79.56 Aligned_cols=56 Identities=23% Similarity=0.412 Sum_probs=39.1
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (316)
..++|+++|.+|||||||+|+|.+.......+..|.+. ..+.. +..+.++||||..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~Dt~G~~ 62 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV--ETVTYKNLKFQVWDLGGLT 62 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE--EEEEETTEEEEEEEECCCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccce--EEEEECCEEEEEEECCCCh
Confidence 45789999999999999999998766433333223222 22223 4468899999974
No 131
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.51 E-value=1.7e-07 Score=80.79 Aligned_cols=100 Identities=9% Similarity=-0.010 Sum_probs=69.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH---h-CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---L-GNRKRILVLNREDMISMAD--RNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~---l-~~k~~IlVlNK~DLv~~~~--~~~~~~~ 171 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+ ..+..+ . .+.|+++|+||+|+.+..+ .++..++
T Consensus 82 i~Dt~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~ 160 (201)
T 2hup_A 82 IWDTAGQ-ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSL 160 (201)
T ss_dssp EECCTTC-GGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EEECCCc-HhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHH
Confidence 5578888 4566666778899999999999876533211 111111 1 3578999999999975321 2233444
Q ss_pred HHhcCc-eEEEeccccccchhhhHHHHHHh
Q 021210 172 FAKQGT-KVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 172 ~~~~g~-~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
....+. .++.+||++|.|++++.+.+.+.
T Consensus 161 ~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 190 (201)
T 2hup_A 161 AEHYDILCAIETSAKDSSNVEEAFLRVATE 190 (201)
T ss_dssp HHHTTCSEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHcCCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 555677 88999999999999988776554
No 132
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.51 E-value=9.3e-08 Score=81.11 Aligned_cols=100 Identities=13% Similarity=0.069 Sum_probs=68.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HH---HHHHhC-CCCEEEEEEccCCCChHhH--HHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PL---MDQWLG-NRKRILVLNREDMISMADR--NAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~---i~~~l~-~k~~IlVlNK~DLv~~~~~--~~~~~~ 171 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+... .. +..... +.|+++|+||+|+.+.... ....++
T Consensus 69 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 147 (196)
T 3tkl_A 69 IWDTAGQ-ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEF 147 (196)
T ss_dssp EEEECCS-GGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHH
T ss_pred EEECCCc-HhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHH
Confidence 4477887 4555566678899999999999987532211 11 111112 5789999999999765321 223334
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
....+..++.+||++|.|++++.+.+.+.
T Consensus 148 ~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 176 (196)
T 3tkl_A 148 ADSLGIPFLETSAKNATNVEQSFMTMAAE 176 (196)
T ss_dssp HHHTTCCEEEECTTTCTTHHHHHHHHHHH
T ss_pred HHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Confidence 45567889999999999999988776554
No 133
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.51 E-value=1.4e-07 Score=93.09 Aligned_cols=99 Identities=18% Similarity=0.086 Sum_probs=64.9
Q ss_pred cccccchHHHHHH--------HHHHHHhhcCeEEEEEeCCCCCCC----CcHHHHHHhCCCCEEEEEEccCCCChHhHHH
Q 021210 100 VQWYPGHIAKTEK--------ELKDQLKLMDVVIEVRDARIPLST----THPLMDQWLGNRKRILVLNREDMISMADRNA 167 (316)
Q Consensus 100 i~~~Pgh~~~~~r--------~l~~~i~~aDlIl~VvDar~~~~~----~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~ 167 (316)
+-++||+. ++.. .....+..+|++|+|+|+.++.+. ....+...+.++|+++|+||+|+.+......
T Consensus 285 liDT~G~~-~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~~~~~ 363 (476)
T 3gee_A 285 LTDTAGLR-EAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALI 363 (476)
T ss_dssp EEC---------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTTHHHH
T ss_pred EEECCCCC-cchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCccchhH
Confidence 56778873 2322 223457899999999999988765 3444555566889999999999987654322
Q ss_pred HHHHHHhc-CceEEEeccccccchhhhHHHHHHhh
Q 021210 168 WATYFAKQ-GTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 168 ~~~~~~~~-g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
+.+.+. ..+++++||++|.|+++|.+.+.+..
T Consensus 364 --~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~ 396 (476)
T 3gee_A 364 --RAIADGTGTEVIGISALNGDGIDTLKQHMGDLV 396 (476)
T ss_dssp --HHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHH
T ss_pred --HHHHhcCCCceEEEEECCCCCHHHHHHHHHHHH
Confidence 223332 35789999999999999988776543
No 134
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.51 E-value=3.3e-08 Score=82.52 Aligned_cols=101 Identities=16% Similarity=0.064 Sum_probs=64.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCChHhHHHHHHHHHhc--
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQ-- 175 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~-- 175 (316)
+-++||+ .++.......+..+|++|+|+|+.++...........+ .+.|+++|+||+|+.+... ++..+.+...
T Consensus 59 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~ 136 (178)
T 2lkc_A 59 FLDTPGH-EAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANP-DRVMQELMEYNL 136 (178)
T ss_dssp ESCCCSS-SSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCH-HHHHHHHTTTTC
T ss_pred EEECCCC-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCH-HHHHHHHHhcCc
Confidence 4456766 22222223446789999999999876544333333333 2689999999999986421 1222223221
Q ss_pred -----C--ceEEEeccccccchhhhHHHHHHhhh
Q 021210 176 -----G--TKVIFSNGQLGMGTMKLSRLAKALAS 202 (316)
Q Consensus 176 -----g--~~vi~iSa~~g~gi~~L~~~L~~l~~ 202 (316)
+ ..++++||++|.|+++|.+.+.+...
T Consensus 137 ~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 137 VPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSE 170 (178)
T ss_dssp CBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred ChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhh
Confidence 1 47889999999999999887766543
No 135
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.51 E-value=6.9e-08 Score=96.89 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=33.6
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCccc--ccCCCCCceee
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC--PAAPRPGVTRV 254 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~--~vs~~pgtT~~ 254 (316)
...+|+++|.+|+|||||+|+|++.+.. .++..|+||+.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~ 104 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCF 104 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceE
Confidence 3568999999999999999999998765 58888888764
No 136
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.51 E-value=1.7e-07 Score=79.66 Aligned_cols=101 Identities=12% Similarity=0.002 Sum_probs=68.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHH---HHHHh---CCCCEEEEEEccCCCChHh-HHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPL---MDQWL---GNRKRILVLNREDMISMAD-RNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~---i~~~l---~~k~~IlVlNK~DLv~~~~-~~~~~~ 170 (316)
+-++||+ .++.......+..+|++++|+|+.++.+.. ... +.... .+.|+++|+||+|+.+... .+...+
T Consensus 60 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 138 (199)
T 2gf0_A 60 ITDTTGS-HQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQA 138 (199)
T ss_dssp EEECCGG-GSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHH
T ss_pred EEeCCCh-HHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHH
Confidence 4567887 344455566789999999999998643221 111 22221 2579999999999975322 222233
Q ss_pred HHHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
.....+..++.+||++|.|+++|.+.+.+..
T Consensus 139 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (199)
T 2gf0_A 139 VAQEWKCAFMETSAKMNYNVKELFQELLTLE 169 (199)
T ss_dssp HHHHHTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred HHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 3445577899999999999999988876654
No 137
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.50 E-value=5.6e-08 Score=94.55 Aligned_cols=59 Identities=24% Similarity=0.340 Sum_probs=37.7
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEE--e-CC-cEEEEeCCCcccC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GK-DLEFLDSPGIIPM 275 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~--~-~~-~~~liDTPGi~~~ 275 (316)
.++|+++|.+|+|||||+|+|++.....++..+|+|.+..... . +. .+.|+||||+...
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~ 96 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDV 96 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcc
Confidence 5689999999999999999999988777889999998864333 2 23 6899999999754
No 138
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.50 E-value=1.5e-07 Score=78.25 Aligned_cols=59 Identities=20% Similarity=0.299 Sum_probs=41.9
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccc-cCCCCCceeeEEEEEeCC---cEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~-vs~~pgtT~~~~~~~~~~---~~~liDTPGi~~ 274 (316)
..++|+++|.+|||||||+|+|.+..... ..+..|++.....+..+. .+.++||||...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 76 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChH
Confidence 35789999999999999999999766322 223334444445555543 578999999754
No 139
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.50 E-value=7.7e-08 Score=80.85 Aligned_cols=99 Identities=9% Similarity=0.047 Sum_probs=57.5
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------CCCCEEEEEEccCCCChHh--HHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMAD--RNAWA 169 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--------~~k~~IlVlNK~DLv~~~~--~~~~~ 169 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+.. .+..++ .+.|+++|+||+|+.+..+ .++..
T Consensus 61 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~ 137 (183)
T 2fu5_C 61 IWDTAGQ-ERFRTITTAYYRGAMGIMLVYDITNEKSFD--NIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGE 137 (183)
T ss_dssp EEEC----------CCTTTTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHH
T ss_pred EEcCCCC-hhhhhhHHHHHhcCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHH
Confidence 5578887 445444456688999999999998753321 111121 2579999999999975321 22333
Q ss_pred HHHHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
++....+..++.+||++|.|++++.+.+.+..
T Consensus 138 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 138 KLALDYGIKFMETSAKANINVENAFFTLARDI 169 (183)
T ss_dssp HHHHHHTCEEEECCC---CCHHHHHHHHHHHH
T ss_pred HHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 44455678899999999999999987765543
No 140
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.50 E-value=1.6e-07 Score=78.91 Aligned_cols=56 Identities=23% Similarity=0.204 Sum_probs=39.2
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeCC---cEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~~---~~~liDTPGi~~ 274 (316)
.++|+++|.+|||||||+|+|.+.. .....++|+.+.. .+..+. .+.++||||...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 64 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 64 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS--CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHH
Confidence 5789999999999999999999765 3444555555432 233332 266899999754
No 141
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.50 E-value=8e-08 Score=80.14 Aligned_cols=100 Identities=16% Similarity=0.046 Sum_probs=66.5
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-H----HHHHh---CCCC-EEEEEEccCCCChHh--HHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWL---GNRK-RILVLNREDMISMAD--RNAW 168 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~----i~~~l---~~k~-~IlVlNK~DLv~~~~--~~~~ 168 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+. . +.... ...| +++|+||+|+.+..+ .++.
T Consensus 60 ~~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~ 138 (178)
T 2hxs_A 60 IWDIGGQ-TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKH 138 (178)
T ss_dssp EEECTTC-CTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHH
T ss_pred EEECCCC-ccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHH
Confidence 5567887 34444556678999999999999875432111 1 11111 1455 789999999965321 1223
Q ss_pred HHHHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 169 ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 169 ~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
.++....+..++++||++|.|++++.+.+...
T Consensus 139 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 170 (178)
T 2hxs_A 139 LRFCQENGFSSHFVSAKTGDSVFLCFQKVAAE 170 (178)
T ss_dssp HHHHHHHTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Confidence 33444567889999999999999988876554
No 142
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.50 E-value=1.8e-07 Score=81.45 Aligned_cols=101 Identities=12% Similarity=0.010 Sum_probs=58.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH------HHHHHhCCCCEEEEEEccCCCChHhH--------
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDMISMADR-------- 165 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~------~i~~~l~~k~~IlVlNK~DLv~~~~~-------- 165 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+. .+.....+.|+++|+||+|+.+....
T Consensus 86 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 164 (214)
T 2j1l_A 86 IWDTAGQ-DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNG 164 (214)
T ss_dssp EEEC----------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTT
T ss_pred EEECCCc-hhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccc
Confidence 5567887 45555556678999999999999865332211 11122236899999999999765321
Q ss_pred ------HHHHHHHHhcCc-eEEEeccccccchhhhHHHHHHhh
Q 021210 166 ------NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 166 ------~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
++..++....+. .++.+||++|.|++++.+.+.+..
T Consensus 165 ~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 165 LEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp CCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 122333445565 889999999999999888765543
No 143
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.50 E-value=7.7e-08 Score=80.17 Aligned_cols=101 Identities=13% Similarity=0.028 Sum_probs=67.5
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH---h--CCCCEEEEEEccCCCChHh--HHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---L--GNRKRILVLNREDMISMAD--RNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~---l--~~k~~IlVlNK~DLv~~~~--~~~~~~ 170 (316)
+-++||+ .++.......+..+|++++|+|+.++.+..+ ..+..+ . .+.|+++|+||+|+.+..+ .++..+
T Consensus 61 ~~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~ 139 (181)
T 2fn4_A 61 ILDTAGQ-EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASA 139 (181)
T ss_dssp EEECCCT-TTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred EEECCCc-hhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH
Confidence 4567887 3444445567889999999999986432211 111122 1 2679999999999975422 122333
Q ss_pred HHHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
+....+..++.+||++|.|++++.+.+.+..
T Consensus 140 ~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 140 FGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170 (181)
T ss_dssp HHHHTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 3445577899999999999999888766543
No 144
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.49 E-value=1.6e-08 Score=85.78 Aligned_cols=101 Identities=15% Similarity=0.067 Sum_probs=65.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhC-----CCCEEEEEEccCCCChHhHHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l~-----~k~~IlVlNK~DLv~~~~~~~~~~~~ 172 (316)
+-++||+ .++.......++.+|++|+|+|+.++.+.. ...+..++. +.|+++|+||+|+.+....+++.+.+
T Consensus 70 ~~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 148 (189)
T 2x77_A 70 VWDLGGQ-TGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQL 148 (189)
T ss_dssp EEEECCS-SSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHT
T ss_pred EEECCCC-HhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHh
Confidence 4456766 222222334567999999999998764322 122333332 57999999999998653333333322
Q ss_pred H-----hcCceEEEeccccccchhhhHHHHHHhh
Q 021210 173 A-----KQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 173 ~-----~~g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
. ..+..++++||++|.|++++.+.+.+..
T Consensus 149 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 149 GVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182 (189)
T ss_dssp TGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ChhhccCCceEEEEccCCCccCHHHHHHHHHHHH
Confidence 1 2235689999999999999888766543
No 145
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.49 E-value=1.2e-07 Score=81.09 Aligned_cols=100 Identities=10% Similarity=-0.017 Sum_probs=60.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-------CCCCEEEEEEccCCCC-hHh--HHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-------GNRKRILVLNREDMIS-MAD--RNA 167 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-------~~k~~IlVlNK~DLv~-~~~--~~~ 167 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+ ..+..+. .+.|+++|+||+|+.+ ..+ .++
T Consensus 77 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~ 155 (208)
T 2yc2_C 77 LLDTAGS-DLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDM 155 (208)
T ss_dssp EEETTTT-HHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHH
T ss_pred EEECCCc-HHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHH
Confidence 5678998 5555555677889999999999987543211 1111111 3678999999999986 322 233
Q ss_pred HHHHHHhcCceEEEecccc-ccchhhhHHHHHHh
Q 021210 168 WATYFAKQGTKVIFSNGQL-GMGTMKLSRLAKAL 200 (316)
Q Consensus 168 ~~~~~~~~g~~vi~iSa~~-g~gi~~L~~~L~~l 200 (316)
..++....+..++.+||++ |.|++++.+.+.+.
T Consensus 156 ~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~ 189 (208)
T 2yc2_C 156 AQDWATTNTLDFFDVSANPPGKDADAPFLSIATT 189 (208)
T ss_dssp HHHHHHHTTCEEEECCC-------CHHHHHHHHH
T ss_pred HHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHH
Confidence 4445556678899999999 99999988776553
No 146
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.49 E-value=2.4e-07 Score=78.85 Aligned_cols=100 Identities=12% Similarity=-0.051 Sum_probs=68.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh-----CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMISMAD--RNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-~~i~~~l-----~~k~~IlVlNK~DLv~~~~--~~~~~~~ 171 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+... ..+...+ .+.|+++|+||+|+.+... .++..+.
T Consensus 76 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 154 (191)
T 3dz8_A 76 IWDTAGQ-ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLL 154 (191)
T ss_dssp EECHHHH-HHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EEeCCCh-HHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHH
Confidence 5567887 5666677788999999999999976432211 1111111 2678999999999864321 1222333
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
....+..++.+||++|.|++++.+.+.+.
T Consensus 155 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 183 (191)
T 3dz8_A 155 AEQLGFDFFEASAKENISVRQAFERLVDA 183 (191)
T ss_dssp HHHHTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44557889999999999999988776543
No 147
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.49 E-value=1.2e-07 Score=78.87 Aligned_cols=58 Identities=24% Similarity=0.288 Sum_probs=41.4
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeCC---cEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~~---~~~liDTPGi~~ 274 (316)
..++|+++|.+|||||||+|+|.+... .....|++|.+.. .+..+. .+.++||||...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 70 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTF-SGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC-CCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchh
Confidence 357899999999999999999997763 3455566665543 334433 478999999643
No 148
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.49 E-value=7.1e-08 Score=79.56 Aligned_cols=101 Identities=14% Similarity=0.011 Sum_probs=66.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH---h-CCCCEEEEEEccCCCChHh-HHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---L-GNRKRILVLNREDMISMAD-RNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~---l-~~k~~IlVlNK~DLv~~~~-~~~~~~~~ 172 (316)
+-++||+ .++.......+..+|++++|+|+.++.+..+ ..+..+ . .+.|+++|+||+|+.+... .+...++.
T Consensus 56 l~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 134 (170)
T 1g16_A 56 IWDTAGQ-ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALA 134 (170)
T ss_dssp EECCTTG-GGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHH
T ss_pred EEeCCCC-hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHH
Confidence 3367777 3344445667899999999999986543211 111111 1 2678999999999954321 22233344
Q ss_pred HhcCceEEEeccccccchhhhHHHHHHhh
Q 021210 173 AKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 173 ~~~g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
.+.+..++++||++|.|++++.+.+.+..
T Consensus 135 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 135 KELGIPFIESSAKNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp HHHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45677899999999999999888766543
No 149
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.49 E-value=1.9e-07 Score=78.95 Aligned_cols=101 Identities=11% Similarity=-0.013 Sum_probs=62.5
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhC--CCCEEEEEEccCCCChH-hHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNREDMISMA-DRNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~--~k~~IlVlNK~DLv~~~-~~~~~~~~ 171 (316)
+-++||+ .++.......+..+|++++|+|+.++.+..+. .+..... +.|+++|+||+|+.+.. ..++..+.
T Consensus 73 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 151 (190)
T 3con_A 73 ILDTAGQ-EEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHEL 151 (190)
T ss_dssp EEECCC------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHH
T ss_pred EEECCCh-HHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHH
Confidence 4567887 45555666778999999999999865432111 1222222 67999999999997532 12233344
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
..+.+..++.+||++|.|++++.+.+.+..
T Consensus 152 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 152 AKSYGIPFIETSAKTRQGVEDAFYTLVREI 181 (190)
T ss_dssp HHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 455677899999999999999887766543
No 150
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.48 E-value=4.3e-08 Score=82.22 Aligned_cols=101 Identities=15% Similarity=-0.014 Sum_probs=66.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHH----HHhCCCCEEEEEEccCCCChHh---------
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD----QWLGNRKRILVLNREDMISMAD--------- 164 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~----~~l~~k~~IlVlNK~DLv~~~~--------- 164 (316)
+-++||+ .++.......+..+|++++|+|+.++.+..+. .+. ....+.|+++|+||+|+.+...
T Consensus 57 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 135 (186)
T 1mh1_A 57 LWDTAGQ-EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 135 (186)
T ss_dssp EECCCCS-GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTT
T ss_pred EEECCCC-HhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccc
Confidence 4467887 33433344567899999999999865432221 122 2223789999999999975421
Q ss_pred -----HHHHHHHHHhcCc-eEEEeccccccchhhhHHHHHHhh
Q 021210 165 -----RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 165 -----~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
.++..++....+. .++++||++|.|++++.+.+.+..
T Consensus 136 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (186)
T 1mh1_A 136 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178 (186)
T ss_dssp CCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHH
Confidence 1122233444565 899999999999999988766543
No 151
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.48 E-value=3.6e-08 Score=85.26 Aligned_cols=101 Identities=11% Similarity=0.009 Sum_probs=64.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc------HHHHHHhCCCCEEEEEEccCCCChHh---------
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH------PLMDQWLGNRKRILVLNREDMISMAD--------- 164 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~------~~i~~~l~~k~~IlVlNK~DLv~~~~--------- 164 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+ ..+.....+.|+++|+||+|+.+...
T Consensus 61 i~Dt~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v 139 (212)
T 2j0v_A 61 LWDTAGQ-EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVI 139 (212)
T ss_dssp EECCCCC-CCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCC
T ss_pred EEECCCc-HHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCC
Confidence 3456776 2233333356789999999999986543221 11122223789999999999865432
Q ss_pred -HHHHHHHHHhcCc-eEEEeccccccchhhhHHHHHHhh
Q 021210 165 -RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 165 -~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
.++..+.....+. .++.+||++|.|++++.+.+....
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (212)
T 2j0v_A 140 TSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 178 (212)
T ss_dssp CHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHH
Confidence 2222333445564 889999999999999988766543
No 152
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.48 E-value=8.4e-08 Score=83.28 Aligned_cols=101 Identities=8% Similarity=-0.087 Sum_probs=66.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhC-CCCEEEEEEccCCCChHhH--HHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-NRKRILVLNREDMISMADR--NAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l~-~k~~IlVlNK~DLv~~~~~--~~~~~~ 171 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+. .+..... +.|+++|+||+|+.+..+. +...++
T Consensus 65 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 143 (218)
T 4djt_A 65 VWDTAGQ-EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEV 143 (218)
T ss_dssp EEEECSG-GGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHH
T ss_pred EEecCCc-hhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHH
Confidence 4567887 33434444668889999999999876433221 1122222 5799999999999865321 222233
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
....+..++.+||++|.|++++.+.+.+..
T Consensus 144 ~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 144 LKGKNYEYFEISAKTAHNFGLPFLHLARIF 173 (218)
T ss_dssp TTTCCCEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred HHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 344567899999999999999988776654
No 153
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.48 E-value=1.7e-07 Score=80.32 Aligned_cols=100 Identities=11% Similarity=-0.059 Sum_probs=68.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~i~~~l-----~~k~~IlVlNK~DLv~~~~--~~~~~~~ 171 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+.... .+...+ .+.|+++|+||+|+.+..+ .+...+.
T Consensus 61 l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 139 (203)
T 1zbd_A 61 IWDTAGL-ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQL 139 (203)
T ss_dssp EEEECCS-GGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHH
T ss_pred EEECCCc-hhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHH
Confidence 4567888 45555666778999999999999865322110 111111 3679999999999975322 2223333
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
....+..++.+||++|.|++++.+.+...
T Consensus 140 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 168 (203)
T 1zbd_A 140 ADHLGFEFFEASAKDNINVKQTFERLVDV 168 (203)
T ss_dssp HHHHTCEEEECBTTTTBSSHHHHHHHHHH
T ss_pred HHHCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44557889999999999999988776553
No 154
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.48 E-value=1.9e-07 Score=76.15 Aligned_cols=100 Identities=10% Similarity=-0.020 Sum_probs=66.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhC--CCCEEEEEEccCCCChHh-HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMISMAD-RNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~--~k~~IlVlNK~DLv~~~~-~~~~~~~ 171 (316)
+-++||+ .++.......+..+|.+++|+|+.++.+..+ ..+..... +.|+++|+||+|+.+... .+...+.
T Consensus 55 ~~D~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~ 133 (166)
T 2ce2_X 55 ILDTAGQ-EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDL 133 (166)
T ss_dssp EEECCCC-SSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHH
T ss_pred EEECCCc-hhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHH
Confidence 3456776 3334445567889999999999876432211 11122222 689999999999986322 2223333
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
..+.+..++.+|+++|.|++++.+.+.+.
T Consensus 134 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 162 (166)
T 2ce2_X 134 ARSYGIPYIETSAKTRQGVEDAFYTLVRE 162 (166)
T ss_dssp HHHHTCCEEEECTTTCTTHHHHHHHHHHH
T ss_pred HHHcCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 44567789999999999999988776543
No 155
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.47 E-value=2.3e-07 Score=76.03 Aligned_cols=55 Identities=22% Similarity=0.240 Sum_probs=37.7
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (316)
.++|+++|.+|||||||+|+|.+... ....++|+... ..+..+. .+.++||||..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~ 63 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 63 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC--
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcc--CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcc
Confidence 47899999999999999999997663 23334444332 2233333 57899999965
No 156
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.47 E-value=2e-07 Score=79.17 Aligned_cols=60 Identities=20% Similarity=0.350 Sum_probs=41.8
Q ss_pred ccceEEeEeccCCCCcchhHHhhhcCcccccC-CCCCceeeEEEEEeC---CcEEEEeCCCccc
Q 021210 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRPGVTRVLKWVRFG---KDLEFLDSPGIIP 274 (316)
Q Consensus 215 ~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs-~~pgtT~~~~~~~~~---~~~~liDTPGi~~ 274 (316)
...++|+++|.+|||||||+|+|.+....... +..|++.....+..+ ..+.|+||||...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 86 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCT
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchh
Confidence 34689999999999999999999987643322 223444444444433 2478999999854
No 157
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.47 E-value=1.8e-07 Score=77.89 Aligned_cols=56 Identities=21% Similarity=0.259 Sum_probs=38.2
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeCC---cEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~~---~~~liDTPGi~ 273 (316)
.++|+++|.+|||||||+|+|.+... .....|.++.+ ...+..+. .+.++||||..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKF-DTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCC-CC----CCSEEEEEEEEEETTEEEEEEEEECCCCG
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCch
Confidence 57899999999999999999997653 23333444433 33344443 58899999964
No 158
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.47 E-value=3.1e-08 Score=86.44 Aligned_cols=100 Identities=11% Similarity=-0.060 Sum_probs=68.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHh
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLGNRKRILVLNREDMISMADRNAWATYFAK 174 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~ 174 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+ ..+.....+.|+++|+||+|+.+.....+..++...
T Consensus 68 i~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 146 (221)
T 3gj0_A 68 VWDTAGQ-EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRK 146 (221)
T ss_dssp EEEECSG-GGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHH
T ss_pred EEeCCCh-HHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHH
Confidence 5567887 3444445567889999999999987543221 112222237899999999999764332222333445
Q ss_pred cCceEEEeccccccchhhhHHHHHHh
Q 021210 175 QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 175 ~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
.+..++.+||++|.|++++.+.+...
T Consensus 147 ~~~~~~~~Sa~~~~gi~~l~~~l~~~ 172 (221)
T 3gj0_A 147 KNLQYYDISAKSNYNFEKPFLWLARK 172 (221)
T ss_dssp HTCEEEECBGGGTBTTTHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 57889999999999999988776554
No 159
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.47 E-value=4.1e-08 Score=93.05 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=21.7
Q ss_pred cceEEeEeccCCCCcchhHHhhhc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLK 239 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~ 239 (316)
....|+|+|+||+|||||+|+|.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 356799999999999999999986
No 160
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.46 E-value=7.2e-08 Score=82.08 Aligned_cols=99 Identities=12% Similarity=0.044 Sum_probs=65.0
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc------HHHHHHhCCCCEEEEEEccCCCChHh---------
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH------PLMDQWLGNRKRILVLNREDMISMAD--------- 164 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~------~~i~~~l~~k~~IlVlNK~DLv~~~~--------- 164 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+ ..+.....+.|+++|+||+|+.+...
T Consensus 70 i~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 148 (194)
T 2atx_A 70 LYDTAGQ-EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMK 148 (194)
T ss_dssp EECCCCS-SSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTT
T ss_pred EEECCCC-cchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhccccc
Confidence 4466776 3333334456788999999999987543211 12222233789999999999976421
Q ss_pred -----HHHHHHHHHhcCc-eEEEeccccccchhhhHHHHHH
Q 021210 165 -----RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 165 -----~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
.++..++....+. .++.+||++|.|++++.+.+.+
T Consensus 149 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 189 (194)
T 2atx_A 149 EKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII 189 (194)
T ss_dssp CCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHH
Confidence 1222333444565 7899999999999998877654
No 161
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.46 E-value=2.4e-07 Score=76.22 Aligned_cols=100 Identities=15% Similarity=-0.043 Sum_probs=56.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCEEEEEEccCCCChHh--HHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMAD--RNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~IlVlNK~DLv~~~~--~~~~~~ 170 (316)
+-++||+ .++.......+..+|++++|+|..++.+..+ ..+..+. .+.|+++|+||+|+.+..+ .+...+
T Consensus 53 i~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 131 (166)
T 3q72_A 53 VYDIWEQ-DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRA 131 (166)
T ss_dssp EEECC----------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHH
T ss_pred EEECCCC-ccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHH
Confidence 4467887 4555555667899999999999986532211 1111121 2579999999999975432 122223
Q ss_pred HHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
.....+..++.+||++|.|++++.+.+.+.
T Consensus 132 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 161 (166)
T 3q72_A 132 CAVVFDCKFIETSAALHHNVQALFEGVVRQ 161 (166)
T ss_dssp HHHHTTCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred HHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Confidence 344556789999999999999988776553
No 162
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.46 E-value=2.3e-07 Score=76.28 Aligned_cols=58 Identities=24% Similarity=0.288 Sum_probs=39.4
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeCC---cEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~~---~~~liDTPGi~~ 274 (316)
..++|+++|.+|||||||+|+|.+... .....|.++.+ ...+..+. .+.++||||...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 66 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIF-TKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCC-CCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHh
Confidence 357899999999999999999997653 22223333333 23333333 578999999754
No 163
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.46 E-value=8.5e-08 Score=81.25 Aligned_cols=57 Identities=26% Similarity=0.390 Sum_probs=42.8
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~~ 274 (316)
..++|+++|.+|||||||+|+|.+.....+.+..|++... +.. +..+.++||||...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~--~~~~~~~l~i~Dt~G~~~ 72 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKS--VQSQGFKLNVWDIGGQRK 72 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEE--EEETTEEEEEEECSSCGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEE--EEECCEEEEEEECCCCHH
Confidence 3578999999999999999999987655556666655432 222 44688999999753
No 164
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.46 E-value=1.1e-07 Score=80.20 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=43.3
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~~ 274 (316)
..++|+++|.+|||||||+|+|.+.......+..|.+.....+ .+..+.++||||...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~ 77 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVI-NNTRFLMWDIGGQES 77 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEE-TTEEEEEEEESSSGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEE-CCEEEEEEECCCCHh
Confidence 3579999999999999999999987765666666755432221 244688999999853
No 165
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.45 E-value=1.8e-07 Score=87.82 Aligned_cols=116 Identities=9% Similarity=-0.003 Sum_probs=74.5
Q ss_pred ccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhC-----CCCEEEEE
Q 021210 84 ADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVL 154 (316)
Q Consensus 84 ~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l~-----~k~~IlVl 154 (316)
.|.+.....+...... +-++||+ .++.......+..+|++|+|+|+.++.+.. ...+..++. +.|+++|+
T Consensus 195 pT~~~~~~~~~~~~~~l~i~Dt~G~-~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~ 273 (329)
T 3o47_A 195 PTIGFNVETVEYKNISFTVWDVGGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFA 273 (329)
T ss_dssp EETTEEEEEEEETTEEEEEEECC------CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred cccceEEEEEecCcEEEEEEECCCC-HhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEE
Confidence 3666655544433222 6678997 556666677889999999999997654322 223333332 67899999
Q ss_pred EccCCCChHhHHHHHHHHHh-----cCceEEEeccccccchhhhHHHHHHh
Q 021210 155 NREDMISMADRNAWATYFAK-----QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 155 NK~DLv~~~~~~~~~~~~~~-----~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
||+|+.+....+++.+.+.. .+..++.+||++|.|+++|.+.|.+.
T Consensus 274 NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~ 324 (329)
T 3o47_A 274 NKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 324 (329)
T ss_dssp ECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred ECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHH
Confidence 99999865444444444322 22468899999999999998876553
No 166
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.45 E-value=1.4e-07 Score=79.63 Aligned_cols=56 Identities=21% Similarity=0.352 Sum_probs=39.2
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (316)
..++|+++|.+|||||||+|+|.+.......+..|.+.. .+.. +..+.++||||..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~Dt~G~~ 73 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK--TLEHRGFKLNIWDVGGQK 73 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEE--EEEETTEEEEEEEECCSH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceE--EEEECCEEEEEEECCCCH
Confidence 357899999999999999999998763233333343322 2223 3468899999974
No 167
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.45 E-value=1.4e-07 Score=82.30 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=46.4
Q ss_pred cceEEeEeccCCCCcchhHHhhh-cCcccccCCCCCceeeEEEEEeCC---cEEEEeCCCcccC
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLL-KRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIPM 275 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~-~~~~~~vs~~pgtT~~~~~~~~~~---~~~liDTPGi~~~ 275 (316)
..++|+++|.+|||||||+|+++ +.......+.+|+|.....+.... .+.++||||....
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 77 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 77 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGT
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHH
Confidence 46899999999999999999955 433445677889888876665543 4789999997543
No 168
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.45 E-value=8.6e-07 Score=77.87 Aligned_cols=89 Identities=13% Similarity=0.053 Sum_probs=59.9
Q ss_pred HHHHHHhhcCeEEEEEeCCCCCCCCcH---HHHHHh-C---CCCEEEEEEccCCCChHhH-----HHHHHHHHhcC--ce
Q 021210 113 ELKDQLKLMDVVIEVRDARIPLSTTHP---LMDQWL-G---NRKRILVLNREDMISMADR-----NAWATYFAKQG--TK 178 (316)
Q Consensus 113 ~l~~~i~~aDlIl~VvDar~~~~~~~~---~i~~~l-~---~k~~IlVlNK~DLv~~~~~-----~~~~~~~~~~g--~~ 178 (316)
.+......+|++|+|+|+.++.+.... .+...+ . +.|+++|+||+|+.+..+. ....++....+ ..
T Consensus 101 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (228)
T 2qu8_A 101 TITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIK 180 (228)
T ss_dssp HHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEE
T ss_pred HHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCce
Confidence 344557888999999999887554322 222222 2 6799999999999865321 12223333444 67
Q ss_pred EEEeccccccchhhhHHHHHHhh
Q 021210 179 VIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 179 vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
++++||++|.|++++.+.+....
T Consensus 181 ~~~~SA~~g~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 181 FSSFSTLTGVGVEQAKITACELL 203 (228)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEecccCCCHHHHHHHHHHHH
Confidence 89999999999999988766543
No 169
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.45 E-value=3.1e-07 Score=77.85 Aligned_cols=58 Identities=22% Similarity=0.306 Sum_probs=41.9
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccc-cCCCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~-vs~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (316)
..++|+++|.+|||||||+|+|.+..... ..+..|++.....+.... .+.|+||||..
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 82 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcH
Confidence 45899999999999999999999765322 233445555544444432 57899999964
No 170
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.45 E-value=1.4e-07 Score=79.30 Aligned_cols=100 Identities=9% Similarity=-0.040 Sum_probs=68.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HH---HHHh-CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LM---DQWL-GNRKRILVLNREDMISMAD--RNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i---~~~l-~~k~~IlVlNK~DLv~~~~--~~~~~~~ 171 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+. .+ .... .+.|+++|+||+|+.+..+ ..+..++
T Consensus 63 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 141 (186)
T 2bme_A 63 IWDTAGQ-ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRF 141 (186)
T ss_dssp EEEECCS-GGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EEeCCCc-HHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 4567887 45556666778999999999999875432111 11 1111 2678999999999964322 2333444
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
....+..++.+||++|.|++++.+.+...
T Consensus 142 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 170 (186)
T 2bme_A 142 AQENELMFLETSALTGENVEEAFVQCARK 170 (186)
T ss_dssp HHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHcCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 55667889999999999999988776543
No 171
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.45 E-value=1.7e-07 Score=80.44 Aligned_cols=99 Identities=13% Similarity=0.003 Sum_probs=66.0
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----CCCCEEEEEEccCCCChH------h--H
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMA------D--R 165 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~i~~~l-----~~k~~IlVlNK~DLv~~~------~--~ 165 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+. .+...+ .+.|+++|+||+|+.+.. + .
T Consensus 81 i~Dt~G~-~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~ 159 (199)
T 2p5s_A 81 LWDTAGQ-ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPG 159 (199)
T ss_dssp EEECTTC-TTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCH
T ss_pred EEECCCC-cchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCH
Confidence 5577887 45566667788999999999999865432221 111111 267999999999996321 0 1
Q ss_pred HHHHHHHHhcCceEEEeccccccchhhhHHHHHH
Q 021210 166 NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 166 ~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
+...++....+..++++||++|.|++++.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~ 193 (199)
T 2p5s_A 160 HFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAR 193 (199)
T ss_dssp HHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 1222334455778999999999999988776554
No 172
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.45 E-value=5.5e-08 Score=92.04 Aligned_cols=55 Identities=31% Similarity=0.462 Sum_probs=45.0
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeC--CcEEEEeCCCccc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG--KDLEFLDSPGIIP 274 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~--~~~~liDTPGi~~ 274 (316)
+|+++|+||||||||||+|.+.+ ..++++|++|.+.. .+.++ ..+.|+||||+..
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~-~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~ 218 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAK-PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIE 218 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC-CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCC-CccccCCccccCceEEEEEeCCCceEEEecCCCCcc
Confidence 68999999999999999999776 46788999998754 34443 5689999999864
No 173
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.44 E-value=1.8e-07 Score=79.50 Aligned_cols=100 Identities=8% Similarity=-0.049 Sum_probs=67.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh----CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMAD--RNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l----~~k~~IlVlNK~DLv~~~~--~~~~~~~ 171 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+... ..+..+. .+.|+++|+||+|+.+..+ ..+..++
T Consensus 78 i~Dt~G~-~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 156 (193)
T 2oil_A 78 IWDTAGL-ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMF 156 (193)
T ss_dssp EEEESCC-CTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EEeCCCc-hhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHH
Confidence 4467887 3444555677899999999999986543211 1122222 2568999999999975321 2233344
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
....+..++.+||++|.|++++.+.+.+.
T Consensus 157 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 185 (193)
T 2oil_A 157 AENNGLLFLETSALDSTNVELAFETVLKE 185 (193)
T ss_dssp HHHTTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 45567889999999999999988776543
No 174
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.44 E-value=2.7e-07 Score=77.10 Aligned_cols=59 Identities=20% Similarity=0.264 Sum_probs=40.9
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccC-CCCCceeeEEEEEeCC---cEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRPGVTRVLKWVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs-~~pgtT~~~~~~~~~~---~~~liDTPGi~~ 274 (316)
..++|+++|.+|||||||+|+|.+....... +..|++.....+..+. .+.++||||...
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 73 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChh
Confidence 3578999999999999999999976543322 2234444444444432 578999999653
No 175
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.44 E-value=2.4e-07 Score=77.15 Aligned_cols=100 Identities=8% Similarity=-0.073 Sum_probs=59.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--H---HHHHHh-----CCCCEEEEEEccCCCChHh---HH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--P---LMDQWL-----GNRKRILVLNREDMISMAD---RN 166 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~---~i~~~l-----~~k~~IlVlNK~DLv~~~~---~~ 166 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+ . .+.... .+.|+++|+||+|+.+... .+
T Consensus 62 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~ 140 (182)
T 1ky3_A 62 VWDTAGQ-ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEK 140 (182)
T ss_dssp EECCC-----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHH
T ss_pred EEECCCC-hHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHH
Confidence 4467887 4455555566889999999999986542211 1 111222 3679999999999964321 12
Q ss_pred HHHHHHH-hcCceEEEeccccccchhhhHHHHHHh
Q 021210 167 AWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 167 ~~~~~~~-~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
+..++.. ..+..++.+||++|.|++++.+.+.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 175 (182)
T 1ky3_A 141 SAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARS 175 (182)
T ss_dssp HHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHH
Confidence 2222222 234678999999999999988876554
No 176
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.44 E-value=1.2e-07 Score=79.59 Aligned_cols=57 Identities=21% Similarity=0.349 Sum_probs=39.8
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~~ 274 (316)
..++|+++|.+|||||||+|+|.+.......+..|.+.. .+.. +..+.++||||...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~ 74 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE--TLSYKNLKLNVWDLGGQTS 74 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEE--EEEETTEEEEEEEEC----
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceE--EEEECCEEEEEEECCCCHh
Confidence 367899999999999999999997765555555564432 2233 44688999999854
No 177
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.43 E-value=2.7e-07 Score=76.18 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=39.1
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (316)
..++|+++|.+|||||||+|+|.+... .....|.++.+. ..+..+. .+.++||||..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 66 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKF-NDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCC-CSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCC-CcCCCCccceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 357899999999999999999997653 233344444433 3344432 46788999964
No 178
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.43 E-value=1.3e-07 Score=81.43 Aligned_cols=100 Identities=14% Similarity=0.088 Sum_probs=66.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc------HHHHHHhCCCCEEEEEEccCCCChHhH--------
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH------PLMDQWLGNRKRILVLNREDMISMADR-------- 165 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~------~~i~~~l~~k~~IlVlNK~DLv~~~~~-------- 165 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+ ..+.....+.|+++|+||+|+.+....
T Consensus 77 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 155 (201)
T 2gco_A 77 LWDTAGQ-EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMK 155 (201)
T ss_dssp EECCCCS-GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTT
T ss_pred EEECCCc-hhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccc
Confidence 4467887 3343334456789999999999986532211 112222237899999999999865321
Q ss_pred ------HHHHHHHHhcCc-eEEEeccccccchhhhHHHHHHh
Q 021210 166 ------NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 166 ------~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
++..++....+. .++.+||++|.|+++|.+.+.+.
T Consensus 156 ~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~ 197 (201)
T 2gco_A 156 QEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRA 197 (201)
T ss_dssp CCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 122233444555 78999999999999998876553
No 179
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.43 E-value=1.9e-07 Score=80.06 Aligned_cols=58 Identities=28% Similarity=0.319 Sum_probs=37.4
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcc-cccCCCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~-~~vs~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (316)
..++|+++|.+|||||||+|+|.+... ....+..|++.....+.++. .+.|+||||..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 88 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCc
Confidence 357899999999999999999997653 23444456555555555543 47899999965
No 180
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.43 E-value=4.5e-07 Score=76.81 Aligned_cols=97 Identities=14% Similarity=0.056 Sum_probs=63.9
Q ss_pred cccccchHHHHH-HHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh--CCCCEEEEEEccCCCChHh--HHHHH
Q 021210 100 VQWYPGHIAKTE-KELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL--GNRKRILVLNREDMISMAD--RNAWA 169 (316)
Q Consensus 100 i~~~Pgh~~~~~-r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~ 169 (316)
+-++||+ .++. ......+..+|++|+|+|+.++.+... ..+...+ .+.|+++|+||+|+.+..+ .+...
T Consensus 73 l~Dt~G~-~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~ 151 (189)
T 1z06_A 73 LWDTAGQ-ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQ 151 (189)
T ss_dssp EEECCCS-HHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHH
T ss_pred EEECCCc-hhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHH
Confidence 5578998 4455 455677899999999999986532211 1222332 3679999999999965422 12223
Q ss_pred HHHHhcCceEEEeccccc---cchhhhHHHH
Q 021210 170 TYFAKQGTKVIFSNGQLG---MGTMKLSRLA 197 (316)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g---~gi~~L~~~L 197 (316)
++....+..++.+||++| .|++++.+.+
T Consensus 152 ~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l 182 (189)
T 1z06_A 152 KFADTHSMPLFETSAKNPNDNDHVEAIFMTL 182 (189)
T ss_dssp HHHHHTTCCEEECCSSSGGGGSCHHHHHHHH
T ss_pred HHHHHcCCEEEEEeCCcCCcccCHHHHHHHH
Confidence 334456778999999999 6666655543
No 181
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.43 E-value=1.1e-07 Score=81.86 Aligned_cols=99 Identities=13% Similarity=0.075 Sum_probs=62.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~ 172 (316)
+-++||+ .++.......+..+|++++|+|+.++.+.. ...+..++ .+.|+++|.||+|+......++..+.+
T Consensus 73 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~ 151 (198)
T 1f6b_A 73 TFDLGGH-IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMF 151 (198)
T ss_dssp EEEECC-----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred EEECCCc-HhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHh
Confidence 4456887 334333445678999999999998753221 12233332 367999999999997532222333333
Q ss_pred Hh-----------------cCceEEEeccccccchhhhHHHHHH
Q 021210 173 AK-----------------QGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 173 ~~-----------------~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
.. .+..++.+||++|.|++++.+.+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 152 GLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp TCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred CcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHH
Confidence 21 2356889999999999998877643
No 182
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.43 E-value=3e-07 Score=77.97 Aligned_cols=58 Identities=24% Similarity=0.322 Sum_probs=40.1
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccc-cCCCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~-vs~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (316)
..++|+++|.+|||||||+|+|.+..... ..+..|++.....+..+. .+.|+||||..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCch
Confidence 35799999999999999999999765322 122223333334444443 57899999964
No 183
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.43 E-value=7.4e-08 Score=82.11 Aligned_cols=100 Identities=13% Similarity=0.054 Sum_probs=67.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--H----HHHHHhCCCCEEEEEEccCCCChH----hHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--P----LMDQWLGNRKRILVLNREDMISMA----DRNAWA 169 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~----~i~~~l~~k~~IlVlNK~DLv~~~----~~~~~~ 169 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+ . .+.....+.|+++|.||+|+.+.. ..++..
T Consensus 75 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 153 (194)
T 3reg_A 75 LWDTAGQ-EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGD 153 (194)
T ss_dssp EEEECCS-GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHH
T ss_pred EEECCCc-HHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHH
Confidence 5567887 4444445566789999999999987543222 1 122223368999999999997531 122333
Q ss_pred HHHHhcCce-EEEeccccccchhhhHHHHHHh
Q 021210 170 TYFAKQGTK-VIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 170 ~~~~~~g~~-vi~iSa~~g~gi~~L~~~L~~l 200 (316)
++....+.. ++.+||++|.|++++.+.+.+.
T Consensus 154 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 185 (194)
T 3reg_A 154 DLCQKLGCVAYIEASSVAKIGLNEVFEKSVDC 185 (194)
T ss_dssp HHHHHHTCSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEEeecCCCCCHHHHHHHHHHH
Confidence 444555665 8999999999999988776554
No 184
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.43 E-value=2e-07 Score=76.85 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=37.7
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcccC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIPM 275 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~~ 275 (316)
.++|+++|.+|||||||+|+|.+... .....|.++.+. ..+..+. .+.++||||....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~ 65 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERF 65 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCC-CC-------CCEEEEEEESSSCEEEEEEECCTTGGGT
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhh
Confidence 47899999999999999999997653 334445555443 3334332 4789999997543
No 185
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.43 E-value=1e-07 Score=78.79 Aligned_cols=98 Identities=14% Similarity=-0.033 Sum_probs=62.6
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh-CCCCEEEEEEccCCCChHh--HHHHHHHH
Q 021210 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-GNRKRILVLNREDMISMAD--RNAWATYF 172 (316)
Q Consensus 101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l-~~k~~IlVlNK~DLv~~~~--~~~~~~~~ 172 (316)
-++||+ .++.......+..+|++++|+|+.++.+..+. .+.... .+.|+++|+||+|+.+..+ .++..++.
T Consensus 60 ~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 138 (170)
T 1z08_A 60 WDTAGQ-ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYA 138 (170)
T ss_dssp EECCCC--------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHH
T ss_pred EECCCc-HhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHH
Confidence 367887 44444444567899999999998765322111 111111 3678999999999975321 22333444
Q ss_pred HhcCceEEEeccccccchhhhHHHHHH
Q 021210 173 AKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 173 ~~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
...+..++++||++|.|++++.+.+.+
T Consensus 139 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 165 (170)
T 1z08_A 139 ESVGAKHYHTSAKQNKGIEELFLDLCK 165 (170)
T ss_dssp HHTTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 556788999999999999998877654
No 186
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.43 E-value=1e-07 Score=81.18 Aligned_cols=100 Identities=12% Similarity=0.052 Sum_probs=67.0
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh----CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMAD--RNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l----~~k~~IlVlNK~DLv~~~~--~~~~~~~ 171 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+ ..+..+. .+.|+++|+||+|+.+..+ .++..++
T Consensus 74 i~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 152 (191)
T 2a5j_A 74 IWDTAGQ-ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAF 152 (191)
T ss_dssp EECCTTG-GGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EEECCCc-hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHH
Confidence 4567887 3444445677899999999999986532221 1111111 2678999999999965322 2223344
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
..+.+..++.+||++|.|++++.+.+.+.
T Consensus 153 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 181 (191)
T 2a5j_A 153 AREHGLIFMETSAKTACNVEEAFINTAKE 181 (191)
T ss_dssp HHHHTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 45567889999999999999988766543
No 187
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.43 E-value=2.6e-07 Score=75.83 Aligned_cols=56 Identities=23% Similarity=0.236 Sum_probs=37.5
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~ 274 (316)
.++|+++|.+|||||||+|+|.+... ......|+... ..+..+. .+.++||||...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 63 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQ 63 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCCccceEEEEEEECCEEEEEEEEECCChHH
Confidence 46899999999999999999997643 22222333322 1223322 478999999754
No 188
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.43 E-value=2.7e-07 Score=76.69 Aligned_cols=57 Identities=21% Similarity=0.297 Sum_probs=41.0
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~ 274 (316)
.++|+++|.+|||||||+|+|++... .....|.++.+. ..+..+. .+.++||||...
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 75 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 75 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHH
Confidence 47899999999999999999997653 333445555553 2333433 578999999653
No 189
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.42 E-value=3.6e-07 Score=78.23 Aligned_cols=58 Identities=22% Similarity=0.350 Sum_probs=41.4
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccc-cCCCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~-vs~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (316)
..++|+++|.+|||||||+|+|.+..... ..+..|++.....+.... .+.|+||||..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCch
Confidence 35789999999999999999999765322 223345555544444432 57899999974
No 190
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.42 E-value=1.7e-07 Score=79.42 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=39.5
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCCcEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~~~~liDTPGi~~ 274 (316)
.++|+++|.+|||||||+|+|.+.......+..|.+.....+ .+..+.++||||...
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~ 72 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVI-NNTRFLMWDIGGQES 72 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEE-TTEEEEEEECCC---
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEE-CCEEEEEEECCCCHh
Confidence 578999999999999999999976655555555544332211 244688999999854
No 191
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.42 E-value=3.3e-07 Score=75.98 Aligned_cols=101 Identities=14% Similarity=-0.097 Sum_probs=60.7
Q ss_pred cccccchHHHHHHHH-HHHHhhcCeEEEEEeCCCCCCCCcH-HH-HHHh-----CCCCEEEEEEccCCCChHh--HHHHH
Q 021210 100 VQWYPGHIAKTEKEL-KDQLKLMDVVIEVRDARIPLSTTHP-LM-DQWL-----GNRKRILVLNREDMISMAD--RNAWA 169 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l-~~~i~~aDlIl~VvDar~~~~~~~~-~i-~~~l-----~~k~~IlVlNK~DLv~~~~--~~~~~ 169 (316)
+-++||+.....+.+ ...+..+|++++|+|..++.+.... .+ ..+. .+.|+++|+||+|+.+..+ .++..
T Consensus 56 ~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~ 135 (175)
T 2nzj_A 56 VVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGR 135 (175)
T ss_dssp EECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHH
T ss_pred EEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHH
Confidence 456788733212222 3446789999999999765332111 11 1111 2679999999999975422 12222
Q ss_pred HHHHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
.+....+..++++||++|.|++++.+.+.+.
T Consensus 136 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 166 (175)
T 2nzj_A 136 ACAVVFDCKFIETSATLQHNVAELFEGVVRQ 166 (175)
T ss_dssp HHHHHHTSEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Confidence 3344556789999999999999998876554
No 192
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.42 E-value=2.8e-07 Score=78.25 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=38.5
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (316)
..++|+++|.+|||||||+|+|.+.........|.+......+.. +..+.++||||..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~ 78 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQG 78 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCST
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCH
Confidence 357899999999999999999998763222222211111222333 4578999999964
No 193
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.42 E-value=1.4e-07 Score=81.24 Aligned_cols=100 Identities=9% Similarity=-0.031 Sum_probs=69.0
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH---h-CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---L-GNRKRILVLNREDMISMAD--RNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~---l-~~k~~IlVlNK~DLv~~~~--~~~~~~~ 171 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+ ..+..+ . .+.|+++|+||+|+.+..+ ..+..++
T Consensus 78 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 156 (200)
T 2o52_A 78 IWDTAGQ-ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRF 156 (200)
T ss_dssp EECCTTH-HHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred EEcCCCc-HhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHH
Confidence 5578997 4555556677899999999999986542211 111111 1 2678999999999964322 2333444
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
....+..++.+||++|.|++++.+.+.+.
T Consensus 157 ~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 185 (200)
T 2o52_A 157 AQENELMFLETSALTGENVEEAFLKCART 185 (200)
T ss_dssp HHHTTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 55667889999999999999988776543
No 194
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.42 E-value=1.4e-07 Score=87.37 Aligned_cols=101 Identities=14% Similarity=0.192 Sum_probs=71.4
Q ss_pred cccccchHHHHHHHH--------HHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCC-hHhHHHH
Q 021210 100 VQWYPGHIAKTEKEL--------KDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS-MADRNAW 168 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l--------~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~-~~~~~~~ 168 (316)
+-++||+..+....+ ...++.+|++++|+|+.. ++..+..+.+.+. +.|.++|+||+|+.. .....+.
T Consensus 60 ~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~ 138 (301)
T 1ega_A 60 YVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPH 138 (301)
T ss_dssp EESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHH
T ss_pred EEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHH
Confidence 456788852222222 233578999999999987 5555555655554 789999999999987 4544445
Q ss_pred HHHHHh-cCc-eEEEeccccccchhhhHHHHHHhh
Q 021210 169 ATYFAK-QGT-KVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 169 ~~~~~~-~g~-~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
.+.+.+ .+. .++++||++|.|+++|.+.+....
T Consensus 139 l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 139 LQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp HHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred HHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence 554543 453 689999999999999988876654
No 195
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.41 E-value=2.8e-07 Score=87.21 Aligned_cols=121 Identities=17% Similarity=0.152 Sum_probs=75.7
Q ss_pred hccccCCcceEEEeccc-c--ccccccchHHH------HHHHHHHHHhhcCeEEEEEeCCCCC-----CCCcH---HHHH
Q 021210 81 CDWADLDADLYYWTKSL-R--PVQWYPGHIAK------TEKELKDQLKLMDVVIEVRDARIPL-----STTHP---LMDQ 143 (316)
Q Consensus 81 e~~~~~d~~~~~~~~~~-~--~i~~~Pgh~~~------~~r~l~~~i~~aDlIl~VvDar~~~-----~~~~~---~i~~ 143 (316)
..+.|++.....+.-.- . .+.++||+... ......+.++++|++|+|+|+.+.. ..... ++..
T Consensus 188 ~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~ 267 (342)
T 1lnz_A 188 YHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSE 267 (342)
T ss_dssp TTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHH
T ss_pred CCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHH
Confidence 34566666655444321 2 27788997432 2345556688899999999996521 11111 1222
Q ss_pred H---hCCCCEEEEEEccCCCChHh-HHHHHHHHHhcCceEEEeccccccchhhhHHHHHHhhh
Q 021210 144 W---LGNRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (316)
Q Consensus 144 ~---l~~k~~IlVlNK~DLv~~~~-~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~~ 202 (316)
+ +..+|+++|+||+|+.+..+ .+++.+.+.. ...++++||+++.|+++|.+.+.+...
T Consensus 268 ~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~-~~~v~~iSA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 268 YNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD-DYPVFPISAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp SCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS-CCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred hhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc-CCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence 2 23689999999999986543 2223222211 156889999999999999888766543
No 196
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.41 E-value=1.9e-07 Score=80.05 Aligned_cols=97 Identities=10% Similarity=-0.006 Sum_probs=62.9
Q ss_pred cccccchHHHHHHHH---HHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-------CCCCEEEEEEccCCCChHhH----
Q 021210 100 VQWYPGHIAKTEKEL---KDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVLNREDMISMADR---- 165 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l---~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l-------~~k~~IlVlNK~DLv~~~~~---- 165 (316)
+-++||+ .++.+.. ...+..+|++|+|+|+.+........+..++ .+.|+++|.||+||.+....
T Consensus 73 i~Dt~G~-~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 151 (196)
T 3llu_A 73 IWDFPGQ-MDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQ 151 (196)
T ss_dssp EEECCSS-CCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHH
T ss_pred EEECCCC-HHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHH
Confidence 4567887 3344444 5778899999999999875211112222222 36799999999999874321
Q ss_pred HH----HHHHHH-----hcCceEEEeccccccchhhhHHHHH
Q 021210 166 NA----WATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 166 ~~----~~~~~~-----~~g~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
.. ..+.+. ..+..++.+||++ .|++++.+.+.
T Consensus 152 ~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~ 192 (196)
T 3llu_A 152 RDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVV 192 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHH
Confidence 11 112222 3456789999999 99988876654
No 197
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.41 E-value=2e-07 Score=78.91 Aligned_cols=56 Identities=27% Similarity=0.425 Sum_probs=39.7
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (316)
..++|+++|.+|||||||+|+|.+.......+..|.+.. .+.. +..+.++||||..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~Dt~G~~ 77 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLE--TLQYKNISFEVWDLGGQT 77 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEE--EEEETTEEEEEEEECCSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEE--EEEECCEEEEEEECCCCH
Confidence 357899999999999999999987664443333343322 2222 3468899999975
No 198
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.41 E-value=2.7e-07 Score=78.74 Aligned_cols=58 Identities=29% Similarity=0.431 Sum_probs=37.9
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCccccc-CCCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~v-s~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (316)
..++|+++|.+|||||||+|+|.+...... .+..|++.....+..+. .+.|+||||..
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 86 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcH
Confidence 357899999999999999999997653321 22233333344444443 57899999965
No 199
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.40 E-value=5.8e-07 Score=74.18 Aligned_cols=99 Identities=17% Similarity=-0.005 Sum_probs=61.8
Q ss_pred cccccchHHHHHHHHH-HHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh---C--CCCEEEEEEccCCCChHh--HHHHH
Q 021210 100 VQWYPGHIAKTEKELK-DQLKLMDVVIEVRDARIPLSTT--HPLMDQWL---G--NRKRILVLNREDMISMAD--RNAWA 169 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~-~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l---~--~k~~IlVlNK~DLv~~~~--~~~~~ 169 (316)
+-++||+ .++...+. ..+..+|++++|+|+.++.+.. ...+..+. . +.|+++|.||+|+.+..+ .++..
T Consensus 55 i~D~~g~-~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~ 133 (169)
T 3q85_A 55 VYDIWEQ-GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGR 133 (169)
T ss_dssp EECCCCC---------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHH
T ss_pred EEECCCc-cccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHH
Confidence 3456777 33433333 4578899999999998643221 11222222 1 679999999999974322 22233
Q ss_pred HHHHhcCceEEEeccccccchhhhHHHHHH
Q 021210 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
++....+..++.+||++|.|++++.+.+.+
T Consensus 134 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (169)
T 3q85_A 134 HLAGTLSCKHIETSAALHHNTRELFEGAVR 163 (169)
T ss_dssp HHHHHTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHcCCcEEEecCccCCCHHHHHHHHHH
Confidence 344556788999999999999998876654
No 200
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.40 E-value=4.4e-07 Score=74.01 Aligned_cols=56 Identities=25% Similarity=0.260 Sum_probs=37.9
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~ 274 (316)
.++|+++|.+|||||||+|+|.+... ....+.++.+. ..+..+. .+.++||||...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 63 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHF--VDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 63 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcC--ccccCCccceEEEEEEEECCEEEEEEEEECCCchh
Confidence 36899999999999999999997653 22333343332 2233332 367999999753
No 201
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.40 E-value=8.7e-08 Score=81.94 Aligned_cols=98 Identities=13% Similarity=0.125 Sum_probs=64.0
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~ 172 (316)
+-++||+. ++.......+..+|++++|+|+.++.+..+ ..+..++ .+.|+++|.||+|+.+....++..+.+
T Consensus 71 i~Dt~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~ 149 (190)
T 1m2o_B 71 TFDLGGHI-QARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSAL 149 (190)
T ss_dssp EEECCCSG-GGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHT
T ss_pred EEECCCCH-HHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHh
Confidence 44678873 333333455789999999999987643221 1223332 367999999999997632233333333
Q ss_pred Hh------------cCceEEEeccccccchhhhHHHHH
Q 021210 173 AK------------QGTKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 173 ~~------------~g~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
.. .+..++++||++|.|++++.+.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 187 (190)
T 1m2o_B 150 GLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 187 (190)
T ss_dssp TCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred CCccccccccccccceEEEEEeECCcCCCHHHHHHHHH
Confidence 21 235688999999999999887754
No 202
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.40 E-value=5.7e-07 Score=77.74 Aligned_cols=99 Identities=13% Similarity=0.111 Sum_probs=61.2
Q ss_pred cccccchHHHHHH-HHHHHHhhcCeEEEEEeCCCCCCCCc---HHHHHHh-------CCCCEEEEEEccCCCChHhHHHH
Q 021210 100 VQWYPGHIAKTEK-ELKDQLKLMDVVIEVRDARIPLSTTH---PLMDQWL-------GNRKRILVLNREDMISMADRNAW 168 (316)
Q Consensus 100 i~~~Pgh~~~~~r-~l~~~i~~aDlIl~VvDar~~~~~~~---~~i~~~l-------~~k~~IlVlNK~DLv~~~~~~~~ 168 (316)
+-++||+ .++.. .....+..+|++|+|+|+.+...... ..+...+ .+.|+++|.||+|+.+.......
T Consensus 58 i~Dt~G~-~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 136 (214)
T 2fh5_B 58 LIDLPGH-ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLI 136 (214)
T ss_dssp EEECCCC-HHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHH
T ss_pred EEECCCC-hhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHH
Confidence 5568999 45555 34456899999999999975211111 1122211 15799999999999755332222
Q ss_pred HHH----HH---------------------------------hc--CceEEEeccccc------cchhhhHHHHHH
Q 021210 169 ATY----FA---------------------------------KQ--GTKVIFSNGQLG------MGTMKLSRLAKA 199 (316)
Q Consensus 169 ~~~----~~---------------------------------~~--g~~vi~iSa~~g------~gi~~L~~~L~~ 199 (316)
.+. +. .. +..++.+||++| .|++++.+.+.+
T Consensus 137 ~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~ 212 (214)
T 2fh5_B 137 QQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAK 212 (214)
T ss_dssp HHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHH
Confidence 211 11 00 345788999999 999999887754
No 203
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.40 E-value=8.5e-08 Score=81.37 Aligned_cols=100 Identities=10% Similarity=-0.044 Sum_probs=66.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~i~~~l-----~~k~~IlVlNK~DLv~~~~--~~~~~~~ 171 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+.... .+...+ .+.|+++|+||+|+.+..+ .++..++
T Consensus 75 l~Dt~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 153 (189)
T 2gf9_A 75 IWDTAGQ-ERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRL 153 (189)
T ss_dssp EEECCSC-CSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred EEeCCCc-HHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHH
Confidence 4567776 33333445667899999999999765322111 111111 2679999999999975422 2233344
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
....+..++.+||++|.|++++.+.+.+.
T Consensus 154 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 182 (189)
T 2gf9_A 154 ADDLGFEFFEASAKENINVKQVFERLVDV 182 (189)
T ss_dssp HHHHTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45567889999999999999998876554
No 204
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.40 E-value=1.5e-07 Score=77.53 Aligned_cols=56 Identities=27% Similarity=0.340 Sum_probs=36.8
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccc--cCCCCCceeeEEEEEeCC---cEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCP--AAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~--vs~~pgtT~~~~~~~~~~---~~~liDTPGi~~ 274 (316)
.++|+++|.+|||||||+|+|.+..... ......+++. .+..+. .+.++||||...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~~Dt~G~~~ 63 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ--VISCDKSICTLQITDTTGSHQ 63 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEE--EEEETTEEEEEEEEECCSCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEE--EEEECCEEEEEEEEECCCchh
Confidence 4789999999999999999999764321 1111222222 222222 478999999753
No 205
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.77 E-value=3.4e-08 Score=85.06 Aligned_cols=98 Identities=15% Similarity=-0.009 Sum_probs=66.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHhC----CCCEEEEEEccCCCChHh---------
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWLG----NRKRILVLNREDMISMAD--------- 164 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~l~----~k~~IlVlNK~DLv~~~~--------- 164 (316)
+-++||+ .++.......+.++|++|+|+|+.++.+..+. .+...+. +.|+++|+||+|+.+...
T Consensus 82 i~Dt~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~ 160 (204)
T 3th5_A 82 LWDTAGQ-EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 160 (204)
Confidence 4578987 55655666778999999999999876543332 2222222 678999999999975421
Q ss_pred -----HHHHHHHHHhcCc-eEEEeccccccchhhhHHHHH
Q 021210 165 -----RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 165 -----~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~L~ 198 (316)
.++..++....+. .++.+||++|.|++++.+.+.
T Consensus 161 ~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~ 200 (204)
T 3th5_A 161 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200 (204)
Confidence 1112222333444 678999999999999877654
No 206
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.40 E-value=3.6e-07 Score=76.54 Aligned_cols=56 Identities=23% Similarity=0.341 Sum_probs=38.7
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeCC---cEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~~---~~~liDTPGi~~ 274 (316)
.++|+++|.+|||||||+|+|.+.. ..+..+.|+.. ...+..+. .+.++||||...
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 66 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ--FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE 66 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCT
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchh
Confidence 5789999999999999999999655 23333334333 22333332 467999999754
No 207
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.40 E-value=3.5e-07 Score=77.34 Aligned_cols=58 Identities=28% Similarity=0.324 Sum_probs=41.6
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCccc-ccCCCCCceeeEEEEEeCC---cEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~-~vs~~pgtT~~~~~~~~~~---~~~liDTPGi~~ 274 (316)
.++|+++|.+|||||||+|+|.+.... ...+..|++.....+..+. .+.|+||||...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 76 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchh
Confidence 578999999999999999999976532 2233345555545455433 478999999754
No 208
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.40 E-value=3e-07 Score=78.24 Aligned_cols=59 Identities=25% Similarity=0.329 Sum_probs=41.1
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccC-CCCCceeeEEEEEeCC---cEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRPGVTRVLKWVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs-~~pgtT~~~~~~~~~~---~~~liDTPGi~~ 274 (316)
..++|+++|.+|||||||+|+|.+....... +..|++.....+..+. .+.|+||||...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 82 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchh
Confidence 4689999999999999999999976643322 2234444444455543 578999999754
No 209
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.39 E-value=4.6e-07 Score=75.77 Aligned_cols=56 Identities=20% Similarity=0.200 Sum_probs=39.8
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeCC---cEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~~---~~~liDTPGi~~ 274 (316)
.++|+++|.+|||||||+|+|.+... ....++|+.... .+..+. .+.|+||||...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 78 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 78 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCC--CCcCCCccceEEEEEEEECCEEEEEEEEECCCCcc
Confidence 57899999999999999999997662 333444444322 233333 578999999653
No 210
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.39 E-value=2.9e-07 Score=76.62 Aligned_cols=57 Identities=19% Similarity=0.176 Sum_probs=40.9
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeCC---cEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~~---~~~liDTPGi~~ 274 (316)
..++|+++|.+|||||||+|+|.+.. ..+..++||.... .+..+. .+.++||||...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 69 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY--FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEE 69 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS--CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc--CccccCCCcCceEEEEEEECCEEEEEEEEECCCchh
Confidence 35789999999999999999999764 3344555555432 233332 477999999764
No 211
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.39 E-value=4.1e-07 Score=76.41 Aligned_cols=57 Identities=18% Similarity=0.359 Sum_probs=40.9
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (316)
..++|+++|.+|||||||+|+|.+... .....|.++.+. ..+..+. .+.++||||..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 70 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKF-KDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 357899999999999999999997653 233345555443 3344443 57899999964
No 212
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.38 E-value=2.2e-07 Score=80.63 Aligned_cols=100 Identities=12% Similarity=0.048 Sum_probs=67.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HH---HHHHh-CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PL---MDQWL-GNRKRILVLNREDMISMAD--RNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~---i~~~l-~~k~~IlVlNK~DLv~~~~--~~~~~~~ 171 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+... .. +.... .+.|+++|.||+|+.+..+ .++..++
T Consensus 79 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~ 157 (201)
T 2ew1_A 79 IWDTAGQ-ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEF 157 (201)
T ss_dssp EEEECCS-GGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHH
T ss_pred EEECCCc-HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHH
Confidence 4467887 4555556677899999999999986543211 11 11111 2578999999999974322 1222333
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
....+..++.+||++|.|++++.+.+...
T Consensus 158 ~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 186 (201)
T 2ew1_A 158 SEAQDMYYLETSAKESDNVEKLFLDLACR 186 (201)
T ss_dssp HHHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 44556789999999999999988766543
No 213
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.38 E-value=4.3e-07 Score=78.08 Aligned_cols=58 Identities=21% Similarity=0.304 Sum_probs=41.7
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~ 274 (316)
..++|+++|.+|||||||+|+|.+... .....|.++.+. ..+..+. .+.|+||||...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 81 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCC-CCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 357899999999999999999997653 334445555443 3344443 578999999754
No 214
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.38 E-value=4e-07 Score=77.15 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=42.2
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~ 274 (316)
..++|+++|.+|||||||+|+|.+... .....|++|.+. ..+..+. .+.|+||||...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 77 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHh
Confidence 357899999999999999999997653 344456655554 3344433 478999999753
No 215
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.38 E-value=3.9e-07 Score=75.81 Aligned_cols=100 Identities=6% Similarity=-0.096 Sum_probs=66.3
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh-----CCCCEEEEEEccCCCChHh-HHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL-----GNRKRILVLNREDMISMAD-RNAW 168 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l-----~~k~~IlVlNK~DLv~~~~-~~~~ 168 (316)
+-++||+ .++.......+..+|++++|+|+.++.+..+ ..+.... .+.|+++|+||+|+.+... .++.
T Consensus 60 i~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~ 138 (177)
T 1wms_A 60 IWDTAGQ-ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEA 138 (177)
T ss_dssp EEECCCC-GGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHH
T ss_pred EEeCCCc-hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHH
Confidence 4567887 4455555577889999999999987542211 1122222 3569999999999974321 2223
Q ss_pred HHHHH-hcCceEEEeccccccchhhhHHHHHHh
Q 021210 169 ATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 169 ~~~~~-~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
.++.. ..+..++++||++|.|++++.+.+.+.
T Consensus 139 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 171 (177)
T 1wms_A 139 QAWCRDNGDYPYFETSAKDATNVAAAFEEAVRR 171 (177)
T ss_dssp HHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHH
Confidence 33333 334779999999999999988766543
No 216
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.37 E-value=4.2e-07 Score=76.76 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=23.7
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
..++|+++|.+|||||||+|+|++..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCc
Confidence 36899999999999999999999875
No 217
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.37 E-value=1.2e-07 Score=81.19 Aligned_cols=100 Identities=12% Similarity=-0.050 Sum_probs=64.4
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH------HHHHHhCCCCEEEEEEccCCCChHh---------
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDMISMAD--------- 164 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~------~i~~~l~~k~~IlVlNK~DLv~~~~--------- 164 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+. .+.....+.|+++|+||+|+.+...
T Consensus 72 i~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 150 (201)
T 2q3h_A 72 LCDTAGQ-DEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCK 150 (201)
T ss_dssp EEECCCS-TTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTT
T ss_pred EEECCCC-HHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccc
Confidence 4466776 22332333467899999999999865432221 1222223789999999999975211
Q ss_pred -----HHHHHHHHHhcCc-eEEEeccccccchhhhHHHHHHh
Q 021210 165 -----RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 165 -----~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
.++..++....+. .++.+||++|.|++++.+.+...
T Consensus 151 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 192 (201)
T 2q3h_A 151 EKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVA 192 (201)
T ss_dssp CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHH
Confidence 1122233334465 78999999999999988776554
No 218
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.37 E-value=1.2e-07 Score=81.98 Aligned_cols=99 Identities=15% Similarity=-0.031 Sum_probs=66.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHH----hCCCCEEEEEEccCCCChHhH--------
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMISMADR-------- 165 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~----l~~k~~IlVlNK~DLv~~~~~-------- 165 (316)
+-++||+ .++.......+..+|++++|+|+.++.+..+. .+... ..+.|+++|+||+|+.+..+.
T Consensus 82 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 160 (204)
T 4gzl_A 82 LWDTAGL-EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 160 (204)
T ss_dssp EEEECCS-GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTT
T ss_pred EEECCCc-hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccc
Confidence 5567887 44444445567899999999999875433221 12222 237899999999999764321
Q ss_pred ------HHHHHHHHhcC-ceEEEeccccccchhhhHHHHHH
Q 021210 166 ------NAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 166 ------~~~~~~~~~~g-~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
++..++....+ ..++++||++|.|++++.+.+.+
T Consensus 161 ~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 201 (204)
T 4gzl_A 161 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 201 (204)
T ss_dssp CCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred cccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHH
Confidence 12223334445 35899999999999998877654
No 219
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.37 E-value=5.2e-07 Score=77.04 Aligned_cols=57 Identities=21% Similarity=0.224 Sum_probs=40.7
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~ 274 (316)
..++|+++|.+|||||||+|+|.+... ....++|+.+. ..+..+. .+.|+||||...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 74 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQED 74 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhh
Confidence 357899999999999999999997662 33444554443 2233443 578999999753
No 220
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.37 E-value=3.9e-07 Score=77.38 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=38.8
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCccccc--CCCCCceeeEEEEEe-CCcEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA--APRPGVTRVLKWVRF-GKDLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~v--s~~pgtT~~~~~~~~-~~~~~liDTPGi~~ 274 (316)
...+|+++|.+|||||||+|+|.+.....+ .+..|.+.. .+.. ...+.|+||||...
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~ 75 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFEKGRVAFTVFDMGGAKK 75 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEEETTEEEEEEEECCSGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEEeCCEEEEEEECCCCHh
Confidence 356899999999999999999998775554 343443322 2222 34688999999853
No 221
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.37 E-value=3e-07 Score=79.71 Aligned_cols=60 Identities=20% Similarity=0.202 Sum_probs=41.8
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCccc-ccCCCCCceeeEEEEEeC----CcEEEEeCCCcccC
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFG----KDLEFLDSPGIIPM 275 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~-~vs~~pgtT~~~~~~~~~----~~~~liDTPGi~~~ 275 (316)
..++|+++|.+|||||||+|+|++.... ......+++.....+... ..+.++||||....
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 74 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKK 74 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhh
Confidence 3579999999999999999999965532 223444555444433332 23789999998644
No 222
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.37 E-value=3.5e-07 Score=79.06 Aligned_cols=55 Identities=24% Similarity=0.301 Sum_probs=40.9
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeC----CcEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG----KDLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~----~~~~liDTPGi~ 273 (316)
.++|+++|.+|||||||+|+|.+.. .....+.++.+...+..+ ..+.++||||..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 65 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ--YRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE 65 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC--CCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC--cccccCCcceeeEEEEecCCCccEEEEEECCCCh
Confidence 4689999999999999999999765 233445555555445553 248999999975
No 223
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.37 E-value=5.1e-07 Score=76.31 Aligned_cols=55 Identities=25% Similarity=0.270 Sum_probs=37.7
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (316)
.++|+++|.+|||||||+|+|.+... .....+|+.+. ..+..+. .+.|+||||..
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 80 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC--
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCC--ccccCCccceEEEEEEEECCEEEEEEEEECCChH
Confidence 57899999999999999999997653 23344454432 2233332 37899999964
No 224
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.36 E-value=2.6e-07 Score=78.98 Aligned_cols=56 Identities=21% Similarity=0.246 Sum_probs=41.0
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~~ 274 (316)
..+|+++|.+|||||||+|+|.+.......+..+.+.. .+.. +..+.++||||...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~ 79 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSE--ELAIGNIKFTTFDLGGHIQ 79 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEE--EEEETTEEEEEEECCCSGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeE--EEEECCEEEEEEECCCCHH
Confidence 45899999999999999999998765555555555432 2333 34688999999854
No 225
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.36 E-value=7e-08 Score=82.74 Aligned_cols=101 Identities=10% Similarity=-0.031 Sum_probs=65.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--H---HHHHHh-----CCCCEEEEEEccCCCChHh-HHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--P---LMDQWL-----GNRKRILVLNREDMISMAD-RNAW 168 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~---~i~~~l-----~~k~~IlVlNK~DLv~~~~-~~~~ 168 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+ . .+.... .+.|+++|+||+|+.+... .+..
T Consensus 61 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 139 (207)
T 1vg8_A 61 IWDTAGQ-ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRA 139 (207)
T ss_dssp EEEECSS-GGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHH
T ss_pred EEeCCCc-HHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHH
Confidence 3456776 3333333456789999999999987543211 1 122222 3579999999999974322 2223
Q ss_pred HHHHH-hcCceEEEeccccccchhhhHHHHHHhh
Q 021210 169 ATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 169 ~~~~~-~~g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
.++.. ..+..++.+||++|.|++++.+.+.+..
T Consensus 140 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 140 QAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173 (207)
T ss_dssp HHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 33333 3457899999999999999988766543
No 226
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.36 E-value=1e-06 Score=88.27 Aligned_cols=90 Identities=14% Similarity=0.048 Sum_probs=59.3
Q ss_pred CCCcchhhhhhccccCCcceEEEecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--C
Q 021210 71 NGSIEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--G 146 (316)
Q Consensus 71 ~~~~g~~~e~e~~~~~d~~~~~~~~~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~ 146 (316)
.++|-.-.|+|.++|+..+...|.-.-. -+-++||| ..+..++...+.-+|.+|+|+||..++...-..+.+.. .
T Consensus 73 ~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH-vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~ 151 (548)
T 3vqt_A 73 ATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH-QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR 151 (548)
T ss_dssp ---------------CTTTEEEEEETTEEEEEECCCCG-GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT
T ss_pred cccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc-HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHh
Confidence 5667777799999999988874443322 38899999 88999999999999999999999998866544444443 3
Q ss_pred CCCEEEEEEccCCCC
Q 021210 147 NRKRILVLNREDMIS 161 (316)
Q Consensus 147 ~k~~IlVlNK~DLv~ 161 (316)
+.|+++++||+|...
T Consensus 152 ~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 152 ATPVMTFVNKMDREA 166 (548)
T ss_dssp TCCEEEEEECTTSCC
T ss_pred CCceEEEEecccchh
Confidence 789999999999753
No 227
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.36 E-value=1.5e-07 Score=80.97 Aligned_cols=100 Identities=9% Similarity=-0.028 Sum_probs=66.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHH---HHh-CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD---QWL-GNRKRILVLNREDMISMAD--RNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~---~~l-~~k~~IlVlNK~DLv~~~~--~~~~~~~ 171 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+. .+. ... .+.|+++|+||+|+.+..+ .+...++
T Consensus 61 l~Dt~G~-~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 139 (206)
T 2bcg_Y 61 IWDTAGQ-ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEF 139 (206)
T ss_dssp EECCTTT-TTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHH
T ss_pred EEeCCCh-HHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHH
Confidence 4467776 33434445667899999999999875432211 111 111 2578999999999976422 2223334
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
....+..++++||++|.|++++.+.+...
T Consensus 140 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 168 (206)
T 2bcg_Y 140 ADANKMPFLETSALDSTNVEDAFLTMARQ 168 (206)
T ss_dssp HHHTTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 44567889999999999999998776554
No 228
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.36 E-value=4.5e-07 Score=77.63 Aligned_cols=56 Identities=20% Similarity=0.335 Sum_probs=39.9
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeCC---cEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~~---~~~liDTPGi~ 273 (316)
.++|+++|.+|||||||+|+|.+... .....|.++.+.. .+..+. .+.|+||||..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCC-CSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSG
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 57899999999999999999997653 2333444444432 333332 57899999974
No 229
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.35 E-value=3.9e-07 Score=75.84 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=39.0
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccc-cCCCCCceeeEEEEEeC----CcEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFG----KDLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~-vs~~pgtT~~~~~~~~~----~~~~liDTPGi~~ 274 (316)
..++|+++|.+|||||||+|+|.+..... ..+..|.......+..+ ..+.++||||...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 68 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTI 68 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcc
Confidence 45789999999999999999999765321 11122222222333443 2588999999754
No 230
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.35 E-value=2.2e-07 Score=80.05 Aligned_cols=56 Identities=23% Similarity=0.303 Sum_probs=36.5
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~~ 274 (316)
..+|+++|.+|||||||+|+|.+.......+..|.+.. .+.. +..+.++||||...
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~--~~~~~~~~l~i~Dt~G~~~ 81 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE--ELTIAGMTFTTFDLGGHIQ 81 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCE--EEEETTEEEEEEEECC---
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeE--EEEECCEEEEEEECCCcHh
Confidence 46899999999999999999998765444444555533 2333 34688999999653
No 231
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.35 E-value=3.1e-07 Score=77.30 Aligned_cols=84 Identities=14% Similarity=0.064 Sum_probs=59.0
Q ss_pred HHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----CCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEeccccc
Q 021210 113 ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLG 187 (316)
Q Consensus 113 ~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l-----~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g 187 (316)
.....+..+|++++|+|+.++.+.....+...+ .+.|+++|+||+|+.+... ++ ....+..++++||++|
T Consensus 76 ~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~--~~---~~~~~~~~~~~SA~~g 150 (172)
T 2gj8_A 76 RAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL--GM---SEVNGHALIRLSARTG 150 (172)
T ss_dssp HHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC--EE---EEETTEEEEECCTTTC
T ss_pred HHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh--hh---hhccCCceEEEeCCCC
Confidence 345668999999999999887765443332222 2579999999999854211 01 1122467899999999
Q ss_pred cchhhhHHHHHHhh
Q 021210 188 MGTMKLSRLAKALA 201 (316)
Q Consensus 188 ~gi~~L~~~L~~l~ 201 (316)
.|+++|.+.+.+..
T Consensus 151 ~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 151 EGVDVLRNHLKQSM 164 (172)
T ss_dssp TTHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHh
Confidence 99999988776543
No 232
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.34 E-value=3.8e-07 Score=93.02 Aligned_cols=89 Identities=15% Similarity=0.110 Sum_probs=71.1
Q ss_pred CCCcchhhhhhccccCCcceEEEecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--
Q 021210 71 NGSIEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG-- 146 (316)
Q Consensus 71 ~~~~g~~~e~e~~~~~d~~~~~~~~~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~-- 146 (316)
.++|-...|+|.++|+..+...|.-.-. .+-++||| ..+..++...+.-+|.+|+|+||..++...-..+.+...
T Consensus 40 ~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH-~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~ 118 (638)
T 3j25_A 40 TRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGH-MDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM 118 (638)
T ss_dssp CSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCS-SSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH
T ss_pred cccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCc-HHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc
Confidence 4567777799999999988774443333 37899999 789999999999999999999999998765555544433
Q ss_pred CCCEEEEEEccCCC
Q 021210 147 NRKRILVLNREDMI 160 (316)
Q Consensus 147 ~k~~IlVlNK~DLv 160 (316)
+.|.++++||+|..
T Consensus 119 ~lp~i~~INKmDr~ 132 (638)
T 3j25_A 119 GIPTIFFINKIDQN 132 (638)
T ss_dssp TCSCEECCEECCSS
T ss_pred CCCeEEEEeccccc
Confidence 67899999999975
No 233
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.34 E-value=3.7e-07 Score=75.01 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=37.4
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCccc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP 274 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~~ 274 (316)
++|+++|.+|||||||+|+|.+..... ..|.+......+.. +..+.++||||...
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 56 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNVETVEYKNISFTVWDVGGQDK 56 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC--CCCCSSCCEEEEECSSCEEEEEECCCCGG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc--ccCcCceeEEEEEECCEEEEEEEcCCChh
Confidence 479999999999999999998765332 33321112222222 34689999999853
No 234
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.34 E-value=4.7e-07 Score=77.84 Aligned_cols=58 Identities=17% Similarity=0.291 Sum_probs=36.0
Q ss_pred ccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeCC---cEEEEeCCCcc
Q 021210 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 215 ~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~~---~~~liDTPGi~ 273 (316)
...++|+++|.+|||||||+|+|.+.... ....|.++.+ ...+..+. .+.|+||||..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 85 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFK-QDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC-ccCCCcccceeEEEEEEECCeeeEEEEEcCCCcH
Confidence 34689999999999999999999976532 2233433333 33444443 58899999974
No 235
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.34 E-value=7.8e-07 Score=74.60 Aligned_cols=57 Identities=23% Similarity=0.307 Sum_probs=37.8
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeCCc---EEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGKD---LEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~~~---~~liDTPGi~~ 274 (316)
..++|+++|.+|||||||+|+|.+... ......++.. ...+..+.. +.++||||...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 78 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIF--VDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEE 78 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCccceeEEEEEeCCcEEEEEEEECCCchh
Confidence 357899999999999999999997642 2223233322 222333332 56799999754
No 236
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.34 E-value=2.6e-07 Score=90.94 Aligned_cols=118 Identities=11% Similarity=-0.035 Sum_probs=75.3
Q ss_pred ccCCcceEEEeccccc--cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCEEEEE
Q 021210 84 ADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVL 154 (316)
Q Consensus 84 ~~~d~~~~~~~~~~~~--i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~IlVl 154 (316)
.|++..+..+...... +-++||+ .++.......++++|++|+|+|+.++.+.. ...+..++ .++|+++|+
T Consensus 352 ~T~~~~~~~~~~~~~~~~l~Dt~G~-~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~ 430 (497)
T 3lvq_E 352 PTVGFNVETVTYKNVKFNVWDVGGQ-DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA 430 (497)
T ss_dssp CCSSEEEEEEESSSCEEEEEEECCC-GGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEE
T ss_pred CccceeEEEEEeCCEEEEEEECCCc-HHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEE
Confidence 3555555544332222 5677886 444444556789999999999998753221 12233333 267999999
Q ss_pred EccCCCChHhHHHHHHHHHh-----cCceEEEeccccccchhhhHHHHHHhhh
Q 021210 155 NREDMISMADRNAWATYFAK-----QGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (316)
Q Consensus 155 NK~DLv~~~~~~~~~~~~~~-----~g~~vi~iSa~~g~gi~~L~~~L~~l~~ 202 (316)
||+||.+....++..+.+.. .+..++++||++|.|++++.+.|.+...
T Consensus 431 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 431 NKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 483 (497)
T ss_dssp ECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC
T ss_pred ECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 99999764333333332211 1245899999999999999888766543
No 237
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.34 E-value=7.2e-07 Score=76.13 Aligned_cols=99 Identities=12% Similarity=-0.000 Sum_probs=66.7
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh--CCCCEEEEEEccCCCChHh--HHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL--GNRKRILVLNREDMISMAD--RNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-----~~i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~ 170 (316)
+-++||+.. .......+..+|++++|+|+.++.+..+ ..+.... .+.|+++|+||+|+.+..+ .++..+
T Consensus 80 l~Dt~G~~~--~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~ 157 (196)
T 2atv_A 80 ILDTAGQED--TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEK 157 (196)
T ss_dssp EEECCCCCC--CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred EEECCCCCc--ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHH
Confidence 556788844 3445567899999999999986543211 1122222 3678999999999975321 122333
Q ss_pred HHHhcCceEEEecccccc-chhhhHHHHHHh
Q 021210 171 YFAKQGTKVIFSNGQLGM-GTMKLSRLAKAL 200 (316)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~-gi~~L~~~L~~l 200 (316)
+....+..++.+||++|. |++++.+.+.+.
T Consensus 158 ~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~ 188 (196)
T 2atv_A 158 LATELACAFYECSACTGEGNITEIFYELCRE 188 (196)
T ss_dssp HHHHHTSEEEECCTTTCTTCHHHHHHHHHHH
T ss_pred HHHHhCCeEEEECCCcCCcCHHHHHHHHHHH
Confidence 344557889999999999 999988776543
No 238
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.33 E-value=2.3e-08 Score=99.96 Aligned_cols=134 Identities=19% Similarity=0.140 Sum_probs=86.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCChHh--HHHHHHHH---
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD--RNAWATYF--- 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~~~--- 172 (316)
+-++||| ..+...+...+..+|++|+|+|+.++......+....+ .+.|+++|+||+|+.+... .......+
T Consensus 56 ~iDTPGh-e~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~ 134 (537)
T 3izy_P 56 FLDTPGH-AAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVV 134 (537)
T ss_dssp CEECSSS-CCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSC
T ss_pred EEECCCh-HHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhh
Confidence 6688999 55666666778899999999999987655443333333 2679999999999974321 11111111
Q ss_pred -Hhc--CceEEEeccccccchhhhHHHHHHhhhhhhhhhcccC-----------C-CccceEEeEeccCCCCcchhH
Q 021210 173 -AKQ--GTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKG-----------L-LPRAVRAGIVGYPNVGKSSLI 234 (316)
Q Consensus 173 -~~~--g~~vi~iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~-----------~-~~~~~~i~ivG~pNvGKSTLi 234 (316)
... ...++++||++|.|+++|.+.+..+...........+ . ....+..+.++..+++|+..+
T Consensus 135 ~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v 211 (537)
T 3izy_P 135 CEDYGGDVQAVHVSALTGENMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSIL 211 (537)
T ss_dssp CCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEE
T ss_pred HHhcCCCceEEEEECCCCCCchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEE
Confidence 111 1468899999999999999888776542221111000 0 112456678888888887765
No 239
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.33 E-value=3.7e-07 Score=88.78 Aligned_cols=146 Identities=12% Similarity=0.082 Sum_probs=86.0
Q ss_pred CCeeEEecCCCCCcCCCCCC-CCCCCcch--hhhhhccccCCcceEEEecccc-c--cccccchHH------HHHHHHHH
Q 021210 49 APIIQTVGGKQSSWHGGNSN-NSNGSIEA--YEEECDWADLDADLYYWTKSLR-P--VQWYPGHIA------KTEKELKD 116 (316)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~-~~~~~~g~--~~e~e~~~~~d~~~~~~~~~~~-~--i~~~Pgh~~------~~~r~l~~ 116 (316)
...|.|+|...- |+.- ...+..+. ..++..+.|.|.....+.-.-. + +-++|||.. ...+.+..
T Consensus 34 ~~kI~IvG~~~v----GKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 34 RRYIVVAGRRNV----GKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp CEEEEEECSCST----TTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CEEEEEECCCCC----CHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHH
Confidence 346777876321 2211 22233332 2345666777776664443322 2 677899832 12344667
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHHHHHHHH-hcCceEEEeccccccchhhh
Q 021210 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFA-KQGTKVIFSNGQLGMGTMKL 193 (316)
Q Consensus 117 ~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~~~~~~~-~~g~~vi~iSa~~g~gi~~L 193 (316)
.+..+|++|+|+|+ ........+...+. +.|+++|+||+|+.+.... +..+.+. ..+..++++||++|.|+++|
T Consensus 110 ~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g~~v~~vSAktg~gI~eL 186 (423)
T 3qq5_A 110 VFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE-ELKGLYESRYEAKVLLVSALQKKGFDDI 186 (423)
T ss_dssp HHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-HHHHHSSCCTTCCCCCCSSCCTTSTTTH
T ss_pred HHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-HHHHHHHHHcCCCEEEEECCCCCCHHHH
Confidence 88999999999998 33333333444432 7899999999999865543 2222232 34578899999999999999
Q ss_pred HHHHHHhh
Q 021210 194 SRLAKALA 201 (316)
Q Consensus 194 ~~~L~~l~ 201 (316)
.+.+.+..
T Consensus 187 ~~~L~~~l 194 (423)
T 3qq5_A 187 GKTISEIL 194 (423)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhh
Confidence 98877654
No 240
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.33 E-value=5.3e-07 Score=76.53 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=38.9
Q ss_pred ccceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (316)
Q Consensus 215 ~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (316)
...++|+++|.+|||||||+|+|.+.... ....|.+..+...+.. +..+.|+||||..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~ 78 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFN-EDMIPTVGFNMRKITKGNVTIKLWDIGGQP 78 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCSEEEEEEEETTEEEEEEEECCSH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCC-CccCCCCceeEEEEEeCCEEEEEEECCCCH
Confidence 34689999999999999999999976532 1222222222222222 3468899999975
No 241
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.33 E-value=3.5e-07 Score=89.19 Aligned_cols=58 Identities=22% Similarity=0.283 Sum_probs=42.7
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccc------------------------------cCCCCCceeeEEEEEe---CC
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP------------------------------AAPRPGVTRVLKWVRF---GK 262 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~------------------------------vs~~pgtT~~~~~~~~---~~ 262 (316)
..++|+++|.+|+|||||+|+|+...... ....+|+|.+.....+ +.
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~ 95 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK 95 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence 35789999999999999999996542211 1123689998755443 44
Q ss_pred cEEEEeCCCcc
Q 021210 263 DLEFLDSPGII 273 (316)
Q Consensus 263 ~~~liDTPGi~ 273 (316)
.+.|+||||..
T Consensus 96 ~~~iiDTPGh~ 106 (439)
T 3j2k_7 96 HFTILDAPGHK 106 (439)
T ss_pred EEEEEECCChH
Confidence 68999999974
No 242
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.32 E-value=6.7e-07 Score=76.83 Aligned_cols=58 Identities=21% Similarity=0.236 Sum_probs=41.2
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~ 274 (316)
..++|+++|.+|||||||+|+|.+... .....|.++.+. ..+..+. .+.|+||||...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTY-TNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCC-CTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHH
Confidence 357899999999999999999997653 333344444433 3444443 588999999753
No 243
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.32 E-value=3.7e-07 Score=76.01 Aligned_cols=56 Identities=21% Similarity=0.322 Sum_probs=35.2
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeC----CcEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFG----KDLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~----~~~~liDTPGi~ 273 (316)
.++|+++|.+|||||||+|+|.+.... ....|.++.+ ...+..+ ..+.++||||..
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 69 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDKYS-QQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC-TTC---CCCSCEEEEECCSSSCCEEEEEECCC---
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcCC-cccCCccceEEEEEEEEEcCCcEEEEEEEECCCCh
Confidence 578999999999999999999976532 2222333333 3333333 247899999953
No 244
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.32 E-value=2.4e-07 Score=91.04 Aligned_cols=99 Identities=17% Similarity=0.141 Sum_probs=66.4
Q ss_pred cccccchHHHHH--------HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHH
Q 021210 100 VQWYPGHIAKTE--------KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~--------r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~ 171 (316)
+-++||+. ++. +.....+..+|++|+|+|+.++.+..+..+...+..+|+++|+||+|+.+........+
T Consensus 276 liDT~G~~-~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~~~~~~~~~~~- 353 (462)
T 3geh_A 276 VLDTAGIR-ETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLITSLEY- 353 (462)
T ss_dssp ECC---------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTTSSCGGGSTTCCC-
T ss_pred EEECCccc-cchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCCCCcchhhHHHHH-
Confidence 55678862 222 22334578899999999999887776667777777899999999999987654321100
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
+. .+..++.+||++|.|+++|.+.+.+..
T Consensus 354 ~~-~~~~~i~iSAktg~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 354 PE-NITQIVHTAAAQKQGIDSLETAILEIV 382 (462)
T ss_dssp CT-TCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred hc-cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 11 235789999999999999988877654
No 245
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.31 E-value=9.3e-07 Score=75.42 Aligned_cols=57 Identities=28% Similarity=0.420 Sum_probs=38.2
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee-EEEEEeCC---cEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LKWVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~-~~~~~~~~---~~~liDTPGi~~ 274 (316)
.++|+++|.+|||||||+|+|.+...... ..|.++.. ...+..+. .+.++||||...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 88 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFIWE-YDPTLESTYRHQATIDDEVVSMEILDTAGQED 88 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSC-CCTTCCEEEEEEEEETTEEEEEEEEECCCCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcc-cCCCCCceEEEEEEECCEEEEEEEEECCCCCc
Confidence 57899999999999999999997653222 11222112 22233332 478999999865
No 246
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.31 E-value=2.3e-07 Score=80.10 Aligned_cols=100 Identities=14% Similarity=0.059 Sum_probs=64.5
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHH----HHHhCCCCEEEEEEccCCCChHhHHH------
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLM----DQWLGNRKRILVLNREDMISMADRNA------ 167 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i----~~~l~~k~~IlVlNK~DLv~~~~~~~------ 167 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+ ..+ .....+.|+++|+||+|+.+.....+
T Consensus 77 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 155 (207)
T 2fv8_A 77 LWDTAGQ-EDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMK 155 (207)
T ss_dssp EEECTTC-TTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTT
T ss_pred EEECCCc-HHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcc
Confidence 4467887 3333334456789999999999976532211 112 22223789999999999975432111
Q ss_pred --------HHHHHHhcCc-eEEEeccccccchhhhHHHHHHh
Q 021210 168 --------WATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 168 --------~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
..++....+. .++.+||++|.|+++|.+.+.+.
T Consensus 156 ~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~ 197 (207)
T 2fv8_A 156 QEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRA 197 (207)
T ss_dssp CCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHH
Confidence 1122233444 78999999999999998877654
No 247
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.31 E-value=7.3e-07 Score=74.90 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=38.0
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE---EEEEeC-C-----------cEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL---KWVRFG-K-----------DLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~---~~~~~~-~-----------~~~liDTPGi~ 273 (316)
..++|+++|.+|||||||+|+|.+... .....|..+.+. ..+..+ . .+.++||||..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 81 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKF-NSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE 81 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCC-CcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH
Confidence 357999999999999999999997653 222222222222 223332 1 57899999984
No 248
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.30 E-value=7.2e-07 Score=77.01 Aligned_cols=57 Identities=23% Similarity=0.214 Sum_probs=38.7
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-CCc--EEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKD--LEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~~~--~~liDTPGi~~ 274 (316)
..++|+++|.+|||||||+|++.+.. ..+...+|+.+... +.. +.. +.++||||...
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 90 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSC--CCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGG
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCC--CCCCcCCeecceeEEEEEECCEEEEEEEEECCCchh
Confidence 35799999999999999999999654 23444556655332 222 333 45999999853
No 249
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.30 E-value=6.4e-07 Score=74.77 Aligned_cols=56 Identities=23% Similarity=0.231 Sum_probs=38.5
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (316)
.++|+++|.+|||||||+|+|.+.......+..|.+. ...+..+. .+.++||||..
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~ 65 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAP 65 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCc
Confidence 5789999999999999999999876443333233222 22233332 46789999974
No 250
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.30 E-value=2.9e-07 Score=78.61 Aligned_cols=58 Identities=22% Similarity=0.214 Sum_probs=18.7
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCcee-e--EEEEEeCC-----cEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-V--LKWVRFGK-----DLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~-~--~~~~~~~~-----~~~liDTPGi~ 273 (316)
..++|+++|.+|||||||+|+|.+......+....|+. + ...+..+. .+.|+||||..
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 84 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD 84 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH
Confidence 35789999999999999999999773223334444443 2 23344433 47899999974
No 251
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.30 E-value=7e-07 Score=76.28 Aligned_cols=57 Identities=23% Similarity=0.167 Sum_probs=36.7
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeCC---cEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~~---~~~liDTPGi~~ 274 (316)
..++|+++|.+|||||||+|+|.+.. .....++||.+.. .+..+. .+.++||||...
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 80 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHH
Confidence 46799999999999999999999765 3344555665432 233333 466999999854
No 252
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.29 E-value=5.7e-07 Score=77.19 Aligned_cols=57 Identities=25% Similarity=0.327 Sum_probs=38.2
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEe---CCcEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRF---GKDLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~---~~~~~liDTPGi~~ 274 (316)
..++|+++|.+|||||||+|+|.+.... ...+.|+... ..+.. ...+.|+||||...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 84 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDE 84 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCT
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccc
Confidence 3678999999999999999999987643 2223333322 11221 12468999999753
No 253
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.29 E-value=7.1e-07 Score=78.03 Aligned_cols=58 Identities=21% Similarity=0.293 Sum_probs=39.0
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccC-CCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs-~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (316)
..++|+++|.+|||||||+|+|.+....... +..|++.....+..+. .+.|+||||..
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 73 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCcc
Confidence 3578999999999999999999976543221 2223333333444443 57899999974
No 254
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.28 E-value=1.1e-06 Score=74.50 Aligned_cols=58 Identities=28% Similarity=0.322 Sum_probs=37.3
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCccccc-CCCCCceeeEEEEEeCC---cEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~v-s~~pgtT~~~~~~~~~~---~~~liDTPGi~~ 274 (316)
..++|+++|.+|||||||+|+|.+...... .+..+.+.. ..+..+. .+.|+||||...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~ 68 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQ 68 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHH
Confidence 357899999999999999999997543211 111121211 1222322 478999999754
No 255
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.28 E-value=2.8e-07 Score=83.46 Aligned_cols=80 Identities=19% Similarity=0.111 Sum_probs=57.4
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHH-HHHHHHhcCceEEEeccccccchhhhHH
Q 021210 119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNA-WATYFAKQGTKVIFSNGQLGMGTMKLSR 195 (316)
Q Consensus 119 ~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~-~~~~~~~~g~~vi~iSa~~g~gi~~L~~ 195 (316)
.++|++|+|+|+... ..+..+...+. +.|+++|+||+|+........ ..+.....|.+++++||++|.|+++|.+
T Consensus 82 ~~~d~vi~VvDas~~--~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~ 159 (256)
T 3iby_A 82 LEYDCIINVIDACHL--ERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQ 159 (256)
T ss_dssp SCCSEEEEEEEGGGH--HHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHHHH
T ss_pred CCCCEEEEEeeCCCc--hhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHHHH
Confidence 789999999999862 22333444443 689999999999875432111 1122334578999999999999999988
Q ss_pred HHHHh
Q 021210 196 LAKAL 200 (316)
Q Consensus 196 ~L~~l 200 (316)
.+.+.
T Consensus 160 ~i~~~ 164 (256)
T 3iby_A 160 SLLHC 164 (256)
T ss_dssp HHHTC
T ss_pred HHHhh
Confidence 87665
No 256
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.28 E-value=3.2e-07 Score=92.89 Aligned_cols=102 Identities=19% Similarity=0.107 Sum_probs=67.9
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCChH--------------
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA-------------- 163 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~~-------------- 163 (316)
+-++||| ..+.......+..+|++|+|+|+.++..........++ .+.|+++++||+|+.+..
T Consensus 74 liDTPGh-e~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~ 152 (594)
T 1g7s_A 74 FIDTPGH-EAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSK 152 (594)
T ss_dssp EECCCTT-SCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTT
T ss_pred EEECCCc-HHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHHH
Confidence 4578998 44444444557789999999999987644333333333 367999999999997421
Q ss_pred ---h--------HHHHHHHHHhcC---------------ceEEEeccccccchhhhHHHHHHhhh
Q 021210 164 ---D--------RNAWATYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAKALAS 202 (316)
Q Consensus 164 ---~--------~~~~~~~~~~~g---------------~~vi~iSa~~g~gi~~L~~~L~~l~~ 202 (316)
. ..+..+.+...+ .+++++||++|.|+++|.+.+..+.+
T Consensus 153 ~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 153 QDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 0 011222233222 36889999999999999988776543
No 257
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.28 E-value=7.9e-07 Score=73.35 Aligned_cols=56 Identities=20% Similarity=0.062 Sum_probs=32.7
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCccc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~ 274 (316)
++|+++|.+|||||||+|+|.+......... .+|.+. ..+..+. .+.++||||...
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 63 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEM-ENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC--
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccC-CCcCCeeeEEEEECCeEEEEEEEECCCccc
Confidence 6899999999999999999986554333322 223332 2233332 467999999864
No 258
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.28 E-value=1.3e-07 Score=82.88 Aligned_cols=100 Identities=10% Similarity=-0.050 Sum_probs=63.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHH---h-CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW---L-GNRKRILVLNREDMISMAD--RNAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~---l-~~k~~IlVlNK~DLv~~~~--~~~~~~~ 171 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+. .+..+ . .+.|+++|+||+|+.+..+ .++..++
T Consensus 66 i~Dt~G~-~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 144 (223)
T 3cpj_B 66 IWDTAGQ-ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTF 144 (223)
T ss_dssp EECCTTT-TTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHH
T ss_pred EEECCCc-cchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHH
Confidence 4567887 33444444567899999999999875432211 11111 1 2578999999999975322 1233344
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHHh
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
....+..++.+||++|.|++++.+.+...
T Consensus 145 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 173 (223)
T 3cpj_B 145 AQENQLLFTETSALNSENVDKAFEELINT 173 (223)
T ss_dssp HHHTTCEEEECCCC-CCCHHHHHHHHHHH
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 45567889999999999999988776544
No 259
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.28 E-value=2.5e-07 Score=80.72 Aligned_cols=101 Identities=11% Similarity=0.008 Sum_probs=66.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HH----HHHHhCCCCEEEEEEccCCCCh-----------
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PL----MDQWLGNRKRILVLNREDMISM----------- 162 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~----i~~~l~~k~~IlVlNK~DLv~~----------- 162 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+ .. +.....+.|+++|.||+|+.+.
T Consensus 79 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 157 (214)
T 3q3j_B 79 LWDTSGS-PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQK 157 (214)
T ss_dssp EEEECCS-GGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTT
T ss_pred EEECCCC-HhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccc
Confidence 4456776 3344444456789999999999987543322 11 2222236799999999999642
Q ss_pred ---HhHHHHHHHHHhcCc-eEEEeccccccc-hhhhHHHHHHhh
Q 021210 163 ---ADRNAWATYFAKQGT-KVIFSNGQLGMG-TMKLSRLAKALA 201 (316)
Q Consensus 163 ---~~~~~~~~~~~~~g~-~vi~iSa~~g~g-i~~L~~~L~~l~ 201 (316)
...++..++....+. .++.+||++|.| ++++.+.+....
T Consensus 158 ~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 158 QAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLC 201 (214)
T ss_dssp CCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred cCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHH
Confidence 111222333445566 889999999998 999888766543
No 260
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.27 E-value=1.8e-06 Score=72.03 Aligned_cols=95 Identities=12% Similarity=-0.008 Sum_probs=61.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh----CCCCEEEEEEccCCCCh---H-hHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL----GNRKRILVLNREDMISM---A-DRN 166 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l----~~k~~IlVlNK~DLv~~---~-~~~ 166 (316)
+-++||+.. ...+..+|++|+|+|+.++.+..+. .+.... .+.|+++|.||+|+.+. . ..+
T Consensus 58 i~Dt~G~~~------~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~ 131 (178)
T 2iwr_A 58 IREEAGAPD------AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDA 131 (178)
T ss_dssp EEECSSSCC------HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHH
T ss_pred EEECCCCch------hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHH
Confidence 345677733 3467889999999999876433221 122221 25689999999999421 1 112
Q ss_pred HHHHHHHhc-CceEEEeccccccchhhhHHHHHHh
Q 021210 167 AWATYFAKQ-GTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 167 ~~~~~~~~~-g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
+..++.... +..++.+||++|.|++++.+.+.+.
T Consensus 132 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~ 166 (178)
T 2iwr_A 132 RARALXADMKRCSYYETXATYGLNVDRVFQEVAQK 166 (178)
T ss_dssp HHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHH
Confidence 222333333 4788999999999999988776543
No 261
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.27 E-value=9.9e-07 Score=76.37 Aligned_cols=57 Identities=21% Similarity=0.340 Sum_probs=39.9
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (316)
..++|+++|.+|||||||+|+|.+... .....|.++.+. ..+..+. .+.++||||..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 86 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 357899999999999999999997653 233334444443 2344433 57899999964
No 262
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.26 E-value=3.6e-07 Score=78.32 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=39.7
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeCC---cEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~~---~~~liDTPGi~ 273 (316)
..++|+++|.+|||||||+|+|.+... .....|++|.+ ...+..+. .+.|+||||..
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 93 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCC-CCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC-CCCcCCcccceEEEEEEEECCEEEEEEEEECCCcH
Confidence 358999999999999999999997653 22223333433 33444443 47899999964
No 263
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.26 E-value=1.5e-06 Score=90.13 Aligned_cols=63 Identities=19% Similarity=0.225 Sum_probs=38.7
Q ss_pred eccccccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCcccccC
Q 021210 182 SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAA 246 (316)
Q Consensus 182 iSa~~g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs 246 (316)
.++-.+.|+++|...+.++......... +..-...+|+++|.+|+|||||+|+|++.....++
T Consensus 18 ~~~~~~~~~~~li~~inkl~d~l~~lg~--~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g 80 (772)
T 3zvr_A 18 GSHMGNRGMEDLIPLVNRLQDAFSAIGQ--NADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRG 80 (772)
T ss_dssp -------CGGGHHHHHHHHHHHHHTTTC--CGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCS
T ss_pred ccccccccHHHHHHHHHHHHHHHHhcCc--cccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcC
Confidence 4556677888888887777553322111 11112358999999999999999999997654444
No 264
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.26 E-value=9.4e-07 Score=76.26 Aligned_cols=57 Identities=19% Similarity=0.193 Sum_probs=36.5
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE-EEEEeCC---cEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~-~~~~~~~---~~~liDTPGi~~ 274 (316)
.++|+++|.+|||||||+|+|.+..... ...|.++... ..+..+. .+.|+||||...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 85 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPE-VYVPTVFENYVADIEVDGKQVELALWDTAGQED 85 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEEEEEEEEECTTCTT
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCC-cCCCcccceEEEEEEECCEEEEEEEEECCCcHH
Confidence 4689999999999999999999765322 1123222222 2233333 478999999753
No 265
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.25 E-value=1.2e-06 Score=76.22 Aligned_cols=56 Identities=20% Similarity=0.181 Sum_probs=32.7
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (316)
..++|+++|.+|||||||+|+|.+.... .....|+.+. ..+..+. .+.|+||||..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 93 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFP--ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQD 93 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC----
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCch
Confidence 3579999999999999999999976532 2222333322 2233333 47899999964
No 266
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.25 E-value=7e-06 Score=68.87 Aligned_cols=91 Identities=20% Similarity=0.153 Sum_probs=55.9
Q ss_pred HHHHHHHHHH----HhhcCeEEEEEeCCCCCC-----------CCcHHHHHHh--CCCCEEEEEEccCCCChH--hHHHH
Q 021210 108 AKTEKELKDQ----LKLMDVVIEVRDARIPLS-----------TTHPLMDQWL--GNRKRILVLNREDMISMA--DRNAW 168 (316)
Q Consensus 108 ~~~~r~l~~~----i~~aDlIl~VvDar~~~~-----------~~~~~i~~~l--~~k~~IlVlNK~DLv~~~--~~~~~ 168 (316)
.++....... +..+++++.|+|+..... ..+..+...+ .+.|+++|+||+|+.+.. +.+++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 145 (190)
T 2cxx_A 66 ERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFL 145 (190)
T ss_dssp HHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHH
Confidence 4444444333 455678888888753211 1111222222 368999999999998653 22333
Q ss_pred HHHHHhcCc-------eEEEeccccccchhhhHHHHHHhh
Q 021210 169 ATYFAKQGT-------KVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 169 ~~~~~~~g~-------~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
. .+.+. .++++||++|.|++++.+.+.+..
T Consensus 146 ~---~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 146 A---EKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp H---HHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred H---HHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 3 33342 478999999999999888766543
No 267
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.25 E-value=9.4e-07 Score=75.12 Aligned_cols=58 Identities=19% Similarity=0.214 Sum_probs=38.4
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcccC
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIPM 275 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~~ 275 (316)
..++|+++|.+|||||||+|+|.+... ......|+.+. ..+.++. .+.|+||||....
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 82 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRF--ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTP 82 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceeeEEEEECCEEEEEEEEECCCCCcc
Confidence 357999999999999999999997652 23344454432 2223332 4679999998643
No 268
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.25 E-value=4.5e-06 Score=85.49 Aligned_cols=88 Identities=11% Similarity=-0.027 Sum_probs=63.6
Q ss_pred CCcchhhhhhccccCCcceEEEecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CC
Q 021210 72 GSIEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GN 147 (316)
Q Consensus 72 ~~~g~~~e~e~~~~~d~~~~~~~~~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~ 147 (316)
+.|-...|.+.++++......+..... .+-++||| .++...+...+..+|.+++|+|+..+.......+...+ .+
T Consensus 48 ~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~-~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ 126 (665)
T 2dy1_A 48 TTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY-GDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLG 126 (665)
T ss_dssp SSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS-GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTT
T ss_pred cccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCc-cchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHcc
Confidence 344445567778888777664443322 26678999 56778888999999999999999887654444443333 27
Q ss_pred CCEEEEEEccCCC
Q 021210 148 RKRILVLNREDMI 160 (316)
Q Consensus 148 k~~IlVlNK~DLv 160 (316)
.|+++|+||+|+.
T Consensus 127 ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 127 LPRMVVVTKLDKG 139 (665)
T ss_dssp CCEEEEEECGGGC
T ss_pred CCEEEEecCCchh
Confidence 8999999999986
No 269
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.24 E-value=2.9e-07 Score=78.29 Aligned_cols=58 Identities=22% Similarity=0.275 Sum_probs=41.3
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCccc-ccCCCCCceeeEEEEEeCC---cEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~-~vs~~pgtT~~~~~~~~~~---~~~liDTPGi~ 273 (316)
..++|+++|.+|||||||+|+|.+.... ...+..|++.....+.... .+.|+||||..
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 83 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChH
Confidence 4579999999999999999999975522 1223345565555555432 48899999954
No 270
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.24 E-value=2e-07 Score=80.00 Aligned_cols=101 Identities=11% Similarity=-0.068 Sum_probs=65.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhC-----CCCEEEEEEccCCCChHh--HHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNREDMISMAD--RNAWAT 170 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~--~~i~~~l~-----~k~~IlVlNK~DLv~~~~--~~~~~~ 170 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+... ..+..+.. +.|+++|+||+|+.+..+ ..+..+
T Consensus 76 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~ 154 (201)
T 3oes_A 76 LVDTAGQ-DEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKK 154 (201)
T ss_dssp EEEECCC-CTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred EEECCCc-cchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHH
Confidence 4456775 2333334456788999999999986432211 11112211 569999999999975432 122233
Q ss_pred HHHhcCceEEEeccccccchhhhHHHHHHhh
Q 021210 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
+....+..++.+||++|.|++++.+.+.+..
T Consensus 155 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 185 (201)
T 3oes_A 155 LAESWGATFMESSARENQLTQGIFTKVIQEI 185 (201)
T ss_dssp HHHHHTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3445677899999999999999887765543
No 271
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.24 E-value=2.8e-07 Score=77.33 Aligned_cols=56 Identities=16% Similarity=0.232 Sum_probs=24.3
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeCC---cEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~~---~~~liDTPGi~ 273 (316)
.++|+++|.+|||||||+|+|.+.. ......|+++.+.. .+.++. .+.|+||||..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDA-FNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68 (183)
T ss_dssp EEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCCh
Confidence 5789999999999999999999654 23333454554432 334433 57899999964
No 272
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.24 E-value=8.6e-07 Score=74.15 Aligned_cols=56 Identities=20% Similarity=0.165 Sum_probs=37.3
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeCC---cEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~~---~~~liDTPGi~~ 274 (316)
.++|+++|.+|||||||+|+|.+... ......|+.+.. .+..+. .+.++||||...
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 65 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC--CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC--CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHh
Confidence 57899999999999999999996542 222233333321 222322 356999999853
No 273
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.23 E-value=1.3e-06 Score=75.05 Aligned_cols=57 Identities=21% Similarity=0.197 Sum_probs=39.5
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE-EEEEeCC---cEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~-~~~~~~~---~~~liDTPGi~ 273 (316)
..++|+++|.+|||||||+|+|.+.... ....|.++.+. ..+..+. .+.|+||||..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 84 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENYIADIEVDGKQVELALWDTAGQE 84 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC-SSCCCSSCCCCEEEEEETTEEEEEEEECCCCSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCC-cccCCcccceEEEEEEECCEEEEEEEEECCCch
Confidence 4578999999999999999999976532 22234433332 2233433 57899999974
No 274
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.23 E-value=5.4e-08 Score=83.54 Aligned_cols=99 Identities=12% Similarity=0.028 Sum_probs=56.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHhC----CCCEEEEEEccCCCChHhH--HHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWLG----NRKRILVLNREDMISMADR--NAWATY 171 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~~l~----~k~~IlVlNK~DLv~~~~~--~~~~~~ 171 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+. .+..+.. +.|+++|+||+|+.+..+. .+..++
T Consensus 86 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~ 164 (199)
T 3l0i_B 86 IWDTAGQ-ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEF 164 (199)
T ss_dssp EECCTTC-TTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHH
T ss_pred EEECCCc-HhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHH
Confidence 4578886 33444444567899999999999875432111 1111111 5789999999999754321 112233
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHH
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
....+..++++||++|.|++++.+.+.+
T Consensus 165 ~~~~~~~~~~vSA~~g~gv~~l~~~l~~ 192 (199)
T 3l0i_B 165 ADSLGIPFLETSAKNATNVEQSFMTMAA 192 (199)
T ss_dssp HHTTTCCBCCCCC---HHHHHHHHHHTT
T ss_pred HHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4455678899999999999988776543
No 275
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.22 E-value=1.2e-06 Score=74.44 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=37.9
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeC-C--cEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG-K--DLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~-~--~~~liDTPGi~ 273 (316)
..++|+++|.+|||||||+|+|.+... ......|+... ..+..+ . .+.++||||..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 82 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQE 82 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC--CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcH
Confidence 368999999999999999999997662 22333333332 122222 2 35899999964
No 276
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.22 E-value=6e-06 Score=78.03 Aligned_cols=85 Identities=12% Similarity=0.079 Sum_probs=61.3
Q ss_pred HhhcCeEEEEEeCCCCCCCC-c--HHHHH-H---hCCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEeccccccch
Q 021210 118 LKLMDVVIEVRDARIPLSTT-H--PLMDQ-W---LGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGT 190 (316)
Q Consensus 118 i~~aDlIl~VvDar~~~~~~-~--~~i~~-~---l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi 190 (316)
...+|.+|+|+|+..+.... . ..+.. + ..++|+++|+||+|+.+..+.++..+.+...+.+++++||++|.|+
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi 323 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGI 323 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBTH
T ss_pred HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcCH
Confidence 45699999999987654211 1 11211 1 2378999999999999876655555555566778999999999999
Q ss_pred hhhHHHHHHhhh
Q 021210 191 MKLSRLAKALAS 202 (316)
Q Consensus 191 ~~L~~~L~~l~~ 202 (316)
++|.+.+.+...
T Consensus 324 ~~l~~~i~~~l~ 335 (357)
T 2e87_A 324 DLVKEEIIKTLR 335 (357)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999887766543
No 277
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.22 E-value=6.4e-07 Score=76.99 Aligned_cols=57 Identities=21% Similarity=0.138 Sum_probs=39.3
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~~ 274 (316)
.++|+++|.+|||||||+|+|.+... .....|++|.+. ..+.++. .+.++||||...
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~ 84 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGGLQG-DSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCCEEC-CGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSG
T ss_pred EEEEEEECCCCCCHHHHHHHHHhccC-CccCCCCcccceEEEEEEECCEEEEEEEEecCCCcc
Confidence 57899999999999999999986432 223445555443 2233333 356889999853
No 278
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.22 E-value=1.2e-06 Score=75.45 Aligned_cols=57 Identities=18% Similarity=0.256 Sum_probs=36.4
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeCC---cEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~~---~~~liDTPGi~ 273 (316)
..++|+++|.+|||||||+|+|.+.... ....|.++.+ ...+..+. .+.|+||||..
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFS-ERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCG
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCC-CCCCCCcceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 3579999999999999999999876532 1222222223 23344443 68899999974
No 279
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.22 E-value=3.7e-07 Score=92.68 Aligned_cols=58 Identities=26% Similarity=0.349 Sum_probs=42.6
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCC------------------------------CCCceeeEEEEEe---CC
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP------------------------------RPGVTRVLKWVRF---GK 262 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~------------------------------~pgtT~~~~~~~~---~~ 262 (316)
..++|+++|.+|+|||||+|+|++........ .+|+|.+.....+ +.
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~ 245 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 245 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSC
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCc
Confidence 46899999999999999999998653322211 2688887543322 45
Q ss_pred cEEEEeCCCcc
Q 021210 263 DLEFLDSPGII 273 (316)
Q Consensus 263 ~~~liDTPGi~ 273 (316)
.+.|+||||..
T Consensus 246 ~~~iiDTPG~e 256 (611)
T 3izq_1 246 NFTIVDAPGHR 256 (611)
T ss_dssp EEEEEECCSSS
T ss_pred eEEEEECCCCc
Confidence 78999999974
No 280
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.22 E-value=1e-06 Score=83.37 Aligned_cols=85 Identities=14% Similarity=0.059 Sum_probs=57.7
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHh----c-------CceEEEecc
Q 021210 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAK----Q-------GTKVIFSNG 184 (316)
Q Consensus 116 ~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~----~-------g~~vi~iSa 184 (316)
..+..+|++|+|+|+...... ..+...+..+|.++|+||+|+.+........+.+.+ . +.+++++||
T Consensus 188 ~~~~~aD~vl~V~d~~~~~~~--~~l~~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA 265 (355)
T 3p32_A 188 AVANMVDTFVLLTLARTGDQL--QGIKKGVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSA 265 (355)
T ss_dssp HHHTTCSEEEEEEESSTTCTT--TTCCTTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBG
T ss_pred HHHHhCCEEEEEECCCCCccH--HHHHHhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEc
Confidence 346999999999998654322 111122234689999999999765443333333322 1 357899999
Q ss_pred ccccchhhhHHHHHHhhh
Q 021210 185 QLGMGTMKLSRLAKALAS 202 (316)
Q Consensus 185 ~~g~gi~~L~~~L~~l~~ 202 (316)
++|.|+++|.+.+.+...
T Consensus 266 ~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 266 VEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp GGTBSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999988776643
No 281
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.21 E-value=7.2e-07 Score=76.46 Aligned_cols=57 Identities=18% Similarity=0.077 Sum_probs=36.3
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (316)
.++|+++|.+|||||||+|++.+.....++..+.++.+. ..+.++. .+.++||+|..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~ 67 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCc
Confidence 478999999999999999999975433334444333332 2334433 34689999964
No 282
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.21 E-value=8.1e-07 Score=75.94 Aligned_cols=57 Identities=19% Similarity=0.292 Sum_probs=35.6
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe-CCcEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~~ 274 (316)
..++|+++|.+|||||||+|+|.+.......+..| .....+.. +..+.++||||...
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~i~Dt~G~~~ 85 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEYKNICFTVWDVGGQDK 85 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETT--EEEEEEEETTEEEEEEECC----
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccccCCcCc--eeEEEEEECCEEEEEEECCCCHh
Confidence 35789999999999999999998765432222112 11122222 34688999999854
No 283
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.20 E-value=9.9e-08 Score=94.67 Aligned_cols=99 Identities=15% Similarity=0.088 Sum_probs=67.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCChH--hHHHHHH---HH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA--DRNAWAT---YF 172 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~~--~~~~~~~---~~ 172 (316)
+-++||| ..+...+...+..+|++|+|+|+.++......+....+ .+.|+++++||+|+.+.. ....... .+
T Consensus 55 ~iDTPGh-e~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~ 133 (501)
T 1zo1_I 55 FLDTPGH-AAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGIL 133 (501)
T ss_dssp EECCCTT-TCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCC
T ss_pred EEECCCc-HHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhh
Confidence 6678999 55666566678899999999999987654433333332 377899999999997532 1110000 00
Q ss_pred -HhcC--ceEEEeccccccchhhhHHHHHH
Q 021210 173 -AKQG--TKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 173 -~~~g--~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
...+ ..++++||++|.|+++|.+.+..
T Consensus 134 ~~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 134 PEEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp TTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred HHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 1112 47899999999999999887653
No 284
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.20 E-value=5.2e-07 Score=78.20 Aligned_cols=55 Identities=25% Similarity=0.358 Sum_probs=39.9
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCccccc--CCCCCceeeEEEEEeCCcEEEEeCCCcccC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPA--APRPGVTRVLKWVRFGKDLEFLDSPGIIPM 275 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~v--s~~pgtT~~~~~~~~~~~~~liDTPGi~~~ 275 (316)
..+|+++|.+|||||||+|+|.+...... +..|+++.+. ....+.++||||....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~ 68 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVKL 68 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG----GGSSCEEEECCCCGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe----eCceEEEEECCCcHHH
Confidence 56899999999999999999997653222 3334444333 2446899999999643
No 285
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.20 E-value=2.2e-06 Score=72.83 Aligned_cols=94 Identities=10% Similarity=-0.032 Sum_probs=60.6
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHH-HHh-----CCCCEEEEEEccCCCChH----hHHHHH
Q 021210 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMD-QWL-----GNRKRILVLNREDMISMA----DRNAWA 169 (316)
Q Consensus 101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~-~~i~-~~l-----~~k~~IlVlNK~DLv~~~----~~~~~~ 169 (316)
-++||+. ++. .+..+|++++|+|+.++.+..+ ..+. .+. .+.|+++|.||+|+.... ..++..
T Consensus 72 ~Dt~G~~-~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~ 145 (184)
T 3ihw_A 72 RDEGGPP-ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRAR 145 (184)
T ss_dssp EECSSSC-CHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHH
T ss_pred EECCCCh-hhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHH
Confidence 4567762 222 6778999999999987543222 1122 221 246899999999994211 122233
Q ss_pred HHHHhcC-ceEEEeccccccchhhhHHHHHHh
Q 021210 170 TYFAKQG-TKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 170 ~~~~~~g-~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
++..+.+ ..++.+||++|.|++++.+.+.+.
T Consensus 146 ~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~ 177 (184)
T 3ihw_A 146 KLSTDLKRCTYYETCATYGLNVERVFQDVAQK 177 (184)
T ss_dssp HHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHcCCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 3444555 788999999999999988766543
No 286
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.20 E-value=5.4e-07 Score=88.83 Aligned_cols=58 Identities=26% Similarity=0.361 Sum_probs=40.9
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCc------------------------------ccccCCCCCceeeEEEEEe---CCc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRR------------------------------MCPAAPRPGVTRVLKWVRF---GKD 263 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~------------------------------~~~vs~~pgtT~~~~~~~~---~~~ 263 (316)
.++|+++|.+|+|||||+|+|++.. .......+|+|.+.....+ +..
T Consensus 33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 112 (483)
T 3p26_A 33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRAN 112 (483)
T ss_dssp EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCce
Confidence 5789999999999999999997541 1122334688888654443 446
Q ss_pred EEEEeCCCccc
Q 021210 264 LEFLDSPGIIP 274 (316)
Q Consensus 264 ~~liDTPGi~~ 274 (316)
+.|+||||...
T Consensus 113 ~~iiDTPG~~~ 123 (483)
T 3p26_A 113 FTIVDAPGHRD 123 (483)
T ss_dssp EEEECCCCCGG
T ss_pred EEEEECCCcHH
Confidence 89999999853
No 287
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.20 E-value=3.8e-06 Score=72.08 Aligned_cols=97 Identities=16% Similarity=-0.031 Sum_probs=62.4
Q ss_pred cccchHHHHHHHH-HHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----CCCCEEEEEEccCCCChHh--HHHHHHH
Q 021210 102 WYPGHIAKTEKEL-KDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMAD--RNAWATY 171 (316)
Q Consensus 102 ~~Pgh~~~~~r~l-~~~i~~aDlIl~VvDar~~~~~~--~~~i~~~l-----~~k~~IlVlNK~DLv~~~~--~~~~~~~ 171 (316)
+++|.. ++...+ ...+..+|++|+|+|+.++.+.. ...+..+. .+.|+++|.||+|+.+..+ .++..++
T Consensus 78 Dt~g~~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 156 (195)
T 3cbq_A 78 DIWEQG-DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHL 156 (195)
T ss_dssp CCCCCS-GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHH
T ss_pred ecCCCc-cchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHH
Confidence 566662 222222 24578899999999997653221 11222221 2679999999999975321 2233333
Q ss_pred HHhcCceEEEeccccccchhhhHHHHHH
Q 021210 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
....+..++.+||++|.|++++.+.+.+
T Consensus 157 a~~~~~~~~e~Sa~~~~~v~~lf~~l~~ 184 (195)
T 3cbq_A 157 AGTLSCKHIETSAALHHNTRELFEGAVR 184 (195)
T ss_dssp HHHTTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHHhCCEEEEEcCCCCCCHHHHHHHHHH
Confidence 4455678999999999999998876654
No 288
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.19 E-value=6.3e-06 Score=78.47 Aligned_cols=103 Identities=16% Similarity=0.015 Sum_probs=66.8
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH------HHHHHh--CCCCEEEEEEccCCCChHhH--HHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWL--GNRKRILVLNREDMISMADR--NAWA 169 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~------~i~~~l--~~k~~IlVlNK~DLv~~~~~--~~~~ 169 (316)
+...|.+..+..+.+.+.+..+|++++|+|+.++...... .+...+ .++|+++|+||+|+.+.... .+..
T Consensus 237 i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~ 316 (364)
T 2qtf_A 237 IRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLV 316 (364)
T ss_dssp CSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHH
Confidence 3334444445566677789999999999999765311111 112222 36899999999999864321 1111
Q ss_pred -HHHHhc---CceEEEeccccccchhhhHHHHHHhhh
Q 021210 170 -TYFAKQ---GTKVIFSNGQLGMGTMKLSRLAKALAS 202 (316)
Q Consensus 170 -~~~~~~---g~~vi~iSa~~g~gi~~L~~~L~~l~~ 202 (316)
+..... +.+++++||++|.|+++|.+.+.++..
T Consensus 317 ~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 317 EKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhc
Confidence 111222 236789999999999999998877644
No 289
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.18 E-value=6e-07 Score=82.64 Aligned_cols=100 Identities=17% Similarity=0.040 Sum_probs=66.6
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc------HHHHHHhCCCCEEEEEEccCCCChHh---------
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH------PLMDQWLGNRKRILVLNREDMISMAD--------- 164 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~------~~i~~~l~~k~~IlVlNK~DLv~~~~--------- 164 (316)
+-++||+ .++.......+..+|++++|+|+.++.+..+ ..+.....+.|+++|+||+|+.+...
T Consensus 207 l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 285 (332)
T 2wkq_A 207 LWDTAGL-EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 285 (332)
T ss_dssp EEEECCC-GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTT
T ss_pred EEeCCCc-hhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccc
Confidence 4567887 3444444456789999999999987543222 11222233789999999999965321
Q ss_pred -----HHHHHHHHHhcCc-eEEEeccccccchhhhHHHHHHh
Q 021210 165 -----RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 165 -----~~~~~~~~~~~g~-~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
.++..++....+. .++.+||++|.|++++.+.+.+.
T Consensus 286 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 327 (332)
T 2wkq_A 286 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 327 (332)
T ss_dssp CCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHH
Confidence 1122333444564 78999999999999988776543
No 290
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.18 E-value=6e-07 Score=81.93 Aligned_cols=82 Identities=21% Similarity=0.100 Sum_probs=56.7
Q ss_pred HhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHHH-HHHHHHhcCceEEEeccccccchhhhH
Q 021210 118 LKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNA-WATYFAKQGTKVIFSNGQLGMGTMKLS 194 (316)
Q Consensus 118 i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~~-~~~~~~~~g~~vi~iSa~~g~gi~~L~ 194 (316)
...+|++|+|+|+... ..+..+...+. +.|+++|+||+|+.+...... ..+.....|.+++++||++|.|+++|.
T Consensus 83 ~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi~el~ 160 (274)
T 3i8s_A 83 SGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALK 160 (274)
T ss_dssp HTCCSEEEEEEEGGGH--HHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGHHHHHHH
T ss_pred hcCCCEEEEEecCCCh--HHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 4799999999999862 12222322222 789999999999875432111 112223457889999999999999998
Q ss_pred HHHHHhh
Q 021210 195 RLAKALA 201 (316)
Q Consensus 195 ~~L~~l~ 201 (316)
+.+.+..
T Consensus 161 ~~i~~~~ 167 (274)
T 3i8s_A 161 LAIDRYK 167 (274)
T ss_dssp HHHHTCC
T ss_pred HHHHHHH
Confidence 8776553
No 291
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.18 E-value=2.8e-07 Score=93.21 Aligned_cols=58 Identities=26% Similarity=0.261 Sum_probs=29.9
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCccccc------------------------------CCCCCceeeEEEEEe---CC
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA------------------------------APRPGVTRVLKWVRF---GK 262 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~v------------------------------s~~pgtT~~~~~~~~---~~ 262 (316)
..++|+++|.+|+|||||+|+|+....... ...+|+|++.....+ +.
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~ 255 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence 457899999999999999999975321111 115688988754443 35
Q ss_pred cEEEEeCCCcc
Q 021210 263 DLEFLDSPGII 273 (316)
Q Consensus 263 ~~~liDTPGi~ 273 (316)
.+.|+||||..
T Consensus 256 ~i~iiDTPGh~ 266 (592)
T 3mca_A 256 IYEIGDAPGHR 266 (592)
T ss_dssp ---CCEEESSS
T ss_pred EEEEEECCChH
Confidence 68899999963
No 292
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.17 E-value=1.5e-06 Score=73.55 Aligned_cols=56 Identities=23% Similarity=0.224 Sum_probs=34.0
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccccCC-CCCceeeEEEEEe--------CCcEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAP-RPGVTRVLKWVRF--------GKDLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~-~pgtT~~~~~~~~--------~~~~~liDTPGi~ 273 (316)
++|+++|.+|||||||+|+|.+......+. .|.+..+.....+ ...+.++||||..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE 67 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH
Confidence 579999999999999999999753222222 2333334322211 2357899999974
No 293
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.17 E-value=1.2e-06 Score=74.51 Aligned_cols=98 Identities=11% Similarity=-0.035 Sum_probs=63.1
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh----CCCCEEEEEEccCCCChHh--HHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL----GNRKRILVLNREDMISMAD--RNAW 168 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-----~i~~~l----~~k~~IlVlNK~DLv~~~~--~~~~ 168 (316)
+-++||+. ++. .+...+..+|++++|+|+.++.+..+. .+.... .+.|+++|.||+|+.+..+ .++.
T Consensus 73 i~Dt~G~~-~~~-~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~ 150 (187)
T 3c5c_A 73 VMDTADLD-TPR-NCERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEG 150 (187)
T ss_dssp EEECCC----CC-CTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHH
T ss_pred EEECCCCC-cch-hHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHH
Confidence 44677762 222 245678899999999999864322211 111111 4689999999999964321 1223
Q ss_pred HHHHHhcCceEEEecc-ccccchhhhHHHHHH
Q 021210 169 ATYFAKQGTKVIFSNG-QLGMGTMKLSRLAKA 199 (316)
Q Consensus 169 ~~~~~~~g~~vi~iSa-~~g~gi~~L~~~L~~ 199 (316)
.++..+.+..++.+|| ++|.|++++.+.+.+
T Consensus 151 ~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~ 182 (187)
T 3c5c_A 151 VALAGRFGCLFFEVSACLDFEHVQHVFHEAVR 182 (187)
T ss_dssp HHHHHHHTCEEEECCSSSCSHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEEeecCccccHHHHHHHHHH
Confidence 3444556788999999 899999998876654
No 294
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.16 E-value=7e-07 Score=77.33 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=24.0
Q ss_pred ccceEEeEeccCCCCcchhHHhhhcCc
Q 021210 215 PRAVRAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 215 ~~~~~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
...++|+++|.+|||||||+|+|.+..
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCC
Confidence 346899999999999999999999765
No 295
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.16 E-value=1.8e-06 Score=73.81 Aligned_cols=59 Identities=17% Similarity=0.131 Sum_probs=37.6
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe----CCcEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~----~~~~~liDTPGi~~ 274 (316)
..++|+++|.+|||||||+|.+.++...........|.......+ ...+.|+||||...
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 81 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMD 81 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHH
Confidence 357899999999999999999987533221111122222222222 23689999999754
No 296
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.15 E-value=7e-07 Score=75.40 Aligned_cols=100 Identities=14% Similarity=0.040 Sum_probs=63.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc------HHHHHHhCCCCEEEEEEccCCCChH----------
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH------PLMDQWLGNRKRILVLNREDMISMA---------- 163 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~------~~i~~~l~~k~~IlVlNK~DLv~~~---------- 163 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+ ..+.....+.|+++|.||+|+.+..
T Consensus 59 i~Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 137 (184)
T 1m7b_A 59 LWDTSGS-PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHR 137 (184)
T ss_dssp EEEECCS-GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTT
T ss_pred EEECCCC-hhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcc
Confidence 3456776 2333333445789999999999986543221 1122223478999999999997421
Q ss_pred ----hHHHHHHHHHhcC-ceEEEeccc-cccchhhhHHHHHHh
Q 021210 164 ----DRNAWATYFAKQG-TKVIFSNGQ-LGMGTMKLSRLAKAL 200 (316)
Q Consensus 164 ----~~~~~~~~~~~~g-~~vi~iSa~-~g~gi~~L~~~L~~l 200 (316)
..++..++..+.+ ..++.+||+ +|.|++++.+.+.+.
T Consensus 138 ~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~ 180 (184)
T 1m7b_A 138 QTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 180 (184)
T ss_dssp CCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHH
Confidence 0122223333445 678999998 689999988776543
No 297
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.15 E-value=1.3e-06 Score=76.68 Aligned_cols=57 Identities=18% Similarity=0.066 Sum_probs=37.5
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE--EEEEeCC---cEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~--~~~~~~~---~~~liDTPGi~ 273 (316)
.++|+++|.+|||||||+|++.+.....+...+.++.+. ..+.++. .+.++||+|..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~ 98 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 98 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCc
Confidence 478999999999999999999975543344444443332 2333433 35689999953
No 298
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.14 E-value=2.7e-06 Score=71.74 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=37.1
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE-EEEEeCC---cEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~-~~~~~~~---~~~liDTPGi~ 273 (316)
..++|+++|.+|||||||+|+|.+.... ....|.+.... ..+..+. .+.++||||..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 66 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSP 66 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEECCEEEEEEEEECCCCh
Confidence 3578999999999999999999976532 22222222111 1222322 47899999964
No 299
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.14 E-value=1.3e-06 Score=85.96 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=39.8
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-CCcEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~~~~~liDTPGi~~ 274 (316)
..++|+++|.+|||||||+|+|++..... ..| |++... +.. +..+.|+||||...
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~--~~~--T~~~~~~~~~~~~~~~~l~Dt~G~~~ 378 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVT--TIP--TVGFNVETVTYKNVKFNVWDVGGQDK 378 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCC--CCC--CSSEEEEEEESSSCEEEEEEECCCGG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCC--cCC--ccceeEEEEEeCCEEEEEEECCCcHH
Confidence 45899999999999999999999877433 333 333322 222 44689999999653
No 300
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.12 E-value=3.9e-06 Score=83.78 Aligned_cols=86 Identities=13% Similarity=0.059 Sum_probs=57.2
Q ss_pred hhhhhccccCCcceEEEecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhC--CCCEEE
Q 021210 77 YEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRIL 152 (316)
Q Consensus 77 ~~e~e~~~~~d~~~~~~~~~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~--~k~~Il 152 (316)
..|.+.+++++.....+..... .+-++||| .++...+...+..+|.+|+|+|+..+.......+...+. +.|+++
T Consensus 61 ~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~-~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiiv 139 (529)
T 2h5e_A 61 EMEKQRGISITTSVMQFPYHDCLVNLLDTPGH-EDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILT 139 (529)
T ss_dssp ---------CCTTEEEEEETTEEEEEECCCCS-TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEE
T ss_pred hhcccCCcceeeeEEEEEECCeEEEEEECCCC-hhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEE
Confidence 3466777787777665554333 27789999 566677888899999999999999876544444444443 679999
Q ss_pred EEEccCCCChH
Q 021210 153 VLNREDMISMA 163 (316)
Q Consensus 153 VlNK~DLv~~~ 163 (316)
++||+|+....
T Consensus 140 viNK~Dl~~~~ 150 (529)
T 2h5e_A 140 FMNKLDRDIRD 150 (529)
T ss_dssp EEECTTSCCSC
T ss_pred EEcCcCCcccc
Confidence 99999997643
No 301
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.12 E-value=4.1e-06 Score=75.37 Aligned_cols=80 Identities=10% Similarity=-0.010 Sum_probs=55.0
Q ss_pred hcCeEEEEEeCCCC--CCCCc--HHHHHH-----hCCCCEEEEEEccCCCChHhHHHHHHHHHh-cCceEEEeccccccc
Q 021210 120 LMDVVIEVRDARIP--LSTTH--PLMDQW-----LGNRKRILVLNREDMISMADRNAWATYFAK-QGTKVIFSNGQLGMG 189 (316)
Q Consensus 120 ~aDlIl~VvDar~~--~~~~~--~~i~~~-----l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~-~g~~vi~iSa~~g~g 189 (316)
++|++|+|+|+.++ .+..+ ..+..+ ..+.|+++|.||+||.+....++..++... .+..++.+||++|.|
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~g 241 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVN 241 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence 69999999999876 33221 111111 136899999999999876555444444433 367889999999999
Q ss_pred hhhhHHHHHH
Q 021210 190 TMKLSRLAKA 199 (316)
Q Consensus 190 i~~L~~~L~~ 199 (316)
++++.+.+.+
T Consensus 242 v~elf~~l~~ 251 (255)
T 3c5h_A 242 VDLAFSTLVQ 251 (255)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998877654
No 302
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.12 E-value=7.3e-07 Score=74.47 Aligned_cols=56 Identities=20% Similarity=0.149 Sum_probs=31.9
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-C--CcEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-G--KDLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~--~~~~liDTPGi~~ 274 (316)
.++|+++|.+|||||||+|++.+... ....++|+.+... +.. + -.+.++||||...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 68 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQED 68 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCC--C----------CBCCCC-------CEEECCCC-CT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChh
Confidence 57899999999999999999997652 2233334332111 111 2 2356999999753
No 303
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.12 E-value=2.6e-06 Score=72.22 Aligned_cols=56 Identities=20% Similarity=0.168 Sum_probs=38.8
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeCC---cEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~~---~~~liDTPGi~~ 274 (316)
.++|+++|.+|||||||+|+|.+... ......|+.+.. .+..+. .+.++||||...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 78 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 78 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC--CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCcc
Confidence 57899999999999999999997642 233344443321 233332 468999999753
No 304
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.12 E-value=2.8e-06 Score=73.16 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=39.2
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEE--EEEeCC---cEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~--~~~~~~---~~~liDTPGi~~ 274 (316)
..++|+++|.+|||||||+|+|.+... ......|+.+.. .+..+. .+.|+||||...
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 69 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQED 69 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CccCCCccceeEEEEEEECCEEEEEEEEECCCcHH
Confidence 357899999999999999999997652 233333443321 223332 578999999853
No 305
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.12 E-value=8.9e-07 Score=76.83 Aligned_cols=100 Identities=14% Similarity=0.040 Sum_probs=63.5
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc------HHHHHHhCCCCEEEEEEccCCCChH----------
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH------PLMDQWLGNRKRILVLNREDMISMA---------- 163 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~------~~i~~~l~~k~~IlVlNK~DLv~~~---------- 163 (316)
+-++||+ .++.......+..+|++|+|+|+.++.+..+ ..+.....+.|+++|.||+|+.+..
T Consensus 80 i~Dt~G~-~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~ 158 (205)
T 1gwn_A 80 LWDTSGS-PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHR 158 (205)
T ss_dssp EEEECCS-GGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTT
T ss_pred EEeCCCc-HhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccc
Confidence 4456776 3333333455789999999999986543222 1122223468999999999997421
Q ss_pred ----hHHHHHHHHHhcC-ceEEEeccc-cccchhhhHHHHHHh
Q 021210 164 ----DRNAWATYFAKQG-TKVIFSNGQ-LGMGTMKLSRLAKAL 200 (316)
Q Consensus 164 ----~~~~~~~~~~~~g-~~vi~iSa~-~g~gi~~L~~~L~~l 200 (316)
..++..++..+.+ ..++.+||+ +|.|++++.+.+.+.
T Consensus 159 ~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~ 201 (205)
T 1gwn_A 159 QTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 201 (205)
T ss_dssp CCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHH
Confidence 0122223333445 578999998 689999988776543
No 306
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.40 E-value=3.5e-07 Score=78.61 Aligned_cols=56 Identities=23% Similarity=0.230 Sum_probs=36.9
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-CC--cEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GK--DLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~~--~~~liDTPGi~~ 274 (316)
.++|+++|.+|||||||+|+|.+... ......||.+... +.. +. .+.++||||...
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90 (204)
Confidence 57899999999999999999986542 2233334433211 111 22 356999999753
No 307
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.11 E-value=7.8e-06 Score=84.09 Aligned_cols=87 Identities=16% Similarity=0.055 Sum_probs=53.1
Q ss_pred cchhhhhhccccCCcceEEEecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCC
Q 021210 74 IEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK 149 (316)
Q Consensus 74 ~g~~~e~e~~~~~d~~~~~~~~~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~ 149 (316)
|-...|++.++|++.....+..... .+-++||| .++.......+..+|.+|+|+|+..+.......+...+ .+.|
T Consensus 53 d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~-~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p 131 (691)
T 1dar_A 53 DFMEQERERGITITAAVTTCFWKDHRINIIDTPGH-VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP 131 (691)
T ss_dssp --------------CCEEEEEETTEEEEEECCCSS-TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC
T ss_pred cCchhhhhcccccccceEEEEECCeEEEEEECcCc-cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCC
Confidence 3334455667777776664433322 37789999 55777788889999999999999987654443333322 3789
Q ss_pred EEEEEEccCCCC
Q 021210 150 RILVLNREDMIS 161 (316)
Q Consensus 150 ~IlVlNK~DLv~ 161 (316)
+++|+||+|+..
T Consensus 132 ~ivviNKiD~~~ 143 (691)
T 1dar_A 132 RIAFANKMDKTG 143 (691)
T ss_dssp EEEEEECTTSTT
T ss_pred EEEEEECCCccc
Confidence 999999999875
No 308
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.09 E-value=1e-06 Score=86.16 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=20.2
Q ss_pred EEeEeccCCCCcchhHHhhhcC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKR 240 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~ 240 (316)
-|+|+|.+|+|||||+|.|++.
T Consensus 69 vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 69 AVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 4899999999999999999964
No 309
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.08 E-value=3.7e-06 Score=79.42 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=22.3
Q ss_pred EEeEeccCCCCcchhHHhhhcCcc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRM 242 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~ 242 (316)
+|+++|.+|+|||||+|+|.+...
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~ 59 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDF 59 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCc
Confidence 799999999999999999998654
No 310
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.08 E-value=1.4e-06 Score=86.86 Aligned_cols=99 Identities=13% Similarity=0.116 Sum_probs=63.2
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh----CCCCEEEEEEccCCCChHh--HHHHHHHHH
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL----GNRKRILVLNREDMISMAD--RNAWATYFA 173 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l----~~k~~IlVlNK~DLv~~~~--~~~~~~~~~ 173 (316)
+.++||+ ..+.......+..+|++|+|+|+... .....+...+ .+.|+++|+||+|+.+..+ .+...+.+.
T Consensus 102 i~Dt~G~-e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~ 178 (535)
T 3dpu_A 102 FWDFGGQ-EIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFP 178 (535)
T ss_dssp EECCCSC-CTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCG
T ss_pred EEECCcH-HHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHH
Confidence 5567775 33333334557889999999999754 1222222222 3589999999999976432 334445555
Q ss_pred hcCceEEEeccccccchhhhHHHHHHhh
Q 021210 174 KQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 174 ~~g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
..+..++.+||++|.|+++|.+.+.+..
T Consensus 179 ~~~~~~~~vSA~~g~gi~eL~~~l~~~~ 206 (535)
T 3dpu_A 179 AIENRFHRISCKNGDGVESIAKSLKSAV 206 (535)
T ss_dssp GGTTCEEECCC-----CTTHHHHHHHHH
T ss_pred hcCCceEEEecCcccCHHHHHHHHHHHH
Confidence 6677899999999999999988776654
No 311
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.07 E-value=7.9e-06 Score=74.19 Aligned_cols=80 Identities=10% Similarity=0.023 Sum_probs=48.8
Q ss_pred cCeEEEEEeCC-CCCCCCcHHHHHHhC-CCCEEEEEEccCCCChHhHHHH----HHHHHhcCceEEEeccccccchhhhH
Q 021210 121 MDVVIEVRDAR-IPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNAW----ATYFAKQGTKVIFSNGQLGMGTMKLS 194 (316)
Q Consensus 121 aDlIl~VvDar-~~~~~~~~~i~~~l~-~k~~IlVlNK~DLv~~~~~~~~----~~~~~~~g~~vi~iSa~~g~gi~~L~ 194 (316)
+|++++++|.. .+....+..+.+.+. ++|+++|+||+|+.+..+.... .+.+...++.++.+|+.++.|++++.
T Consensus 116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~ 195 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLV 195 (274)
T ss_dssp CCEEEEEECSCCSSCCHHHHHHHHHHTTTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------C
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHhccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHH
Confidence 77888888654 455655666666665 7899999999999987665433 34455567788889999999999887
Q ss_pred HHHHHh
Q 021210 195 RLAKAL 200 (316)
Q Consensus 195 ~~L~~l 200 (316)
+.+.+.
T Consensus 196 ~~l~~~ 201 (274)
T 3t5d_A 196 KKIKDR 201 (274)
T ss_dssp HHHHHT
T ss_pred HHHhcC
Confidence 776553
No 312
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.06 E-value=5.5e-06 Score=70.90 Aligned_cols=58 Identities=19% Similarity=0.320 Sum_probs=38.3
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccC-CCCCceeeEEEEEeCC---cEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRPGVTRVLKWVRFGK---DLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs-~~pgtT~~~~~~~~~~---~~~liDTPGi~~ 274 (316)
.++|+++|.+|||||||+|+|.+....... +..|++.....+.++. .+.++||||...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 66 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGG
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchh
Confidence 468999999999999999999986532221 2223333333344433 356899999754
No 313
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.05 E-value=4.6e-06 Score=70.77 Aligned_cols=56 Identities=27% Similarity=0.286 Sum_probs=36.8
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee-EEEEEeCC---cEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LKWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~-~~~~~~~~---~~~liDTPGi~ 273 (316)
..++|+++|.+|||||||+|++++..... ...| |... ...+.++. .+.++||||..
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~~-~~~~-t~~~~~~~~~~~~~~~~l~i~Dt~G~~ 78 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQ-EESP-EGGRFKKEIVVDGQSYLLLIRDEGGPP 78 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSCCC-CCCT-TCEEEEEEEEETTEEEEEEEEECSSSC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCC-CcceEEEEEEECCEEEEEEEEECCCCh
Confidence 46899999999999999999999765322 1122 1111 12233332 35679999974
No 314
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.05 E-value=2.3e-06 Score=80.12 Aligned_cols=54 Identities=20% Similarity=0.318 Sum_probs=36.6
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEe-CCcEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~-~~~~~liDTPGi~ 273 (316)
..++|+++|.+|||||||+|+|.+..... ..| |++... +.. +..+.|+||||-.
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~--~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~ 220 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQD 220 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEE--EEE--ETTEEEEEEEETTEEEEEEECC---
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCC--ccc--ccceEEEEEecCcEEEEEEECCCCH
Confidence 35789999999999999999999876432 233 443332 222 3468899999954
No 315
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.05 E-value=2.4e-06 Score=82.84 Aligned_cols=55 Identities=38% Similarity=0.602 Sum_probs=44.1
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEeC--CcEEEEeCCCccc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG--KDLEFLDSPGIIP 274 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~~--~~~~liDTPGi~~ 274 (316)
.|+++|.+|+|||||+|+|.+... .+++.|++|..... +..+ ..+.+.||||+..
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~ 217 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 217 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred EEEEECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEecccccc
Confidence 589999999999999999998753 67888998876432 3333 5689999999964
No 316
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.04 E-value=4.1e-06 Score=70.56 Aligned_cols=25 Identities=12% Similarity=0.134 Sum_probs=22.5
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.++|+++|.+|||||||+|.|.+..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 5789999999999999999988754
No 317
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.03 E-value=1.5e-05 Score=73.79 Aligned_cols=112 Identities=13% Similarity=0.064 Sum_probs=69.3
Q ss_pred hhccccCCcceEEEe--cccc-ccccccchHHHHH-----HHHHHHHhhcCeEEEEEeCCCCCCCCcHH-----HHHH--
Q 021210 80 ECDWADLDADLYYWT--KSLR-PVQWYPGHIAKTE-----KELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQW-- 144 (316)
Q Consensus 80 ~e~~~~~d~~~~~~~--~~~~-~i~~~Pgh~~~~~-----r~l~~~i~~aDlIl~VvDar~~~~~~~~~-----i~~~-- 144 (316)
...+.|++..+..+. .... .+-++||+ .++. ......+..+|++|+|+|+.++.+..+.. +..+
T Consensus 33 ~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~-~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~ 111 (307)
T 3r7w_A 33 RRLGATIDVEHSHLRFLGNMTLNLWDCGGQ-DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRK 111 (307)
T ss_dssp GGCCCCCSEEEEEEEETTTEEEEEEEECCS-HHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHH
T ss_pred cCcCCccceEEEEEEeCCceEEEEEECCCc-HHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHH
Confidence 355667777666443 2111 26678998 4442 33345678999999999998765433221 1111
Q ss_pred -hCCCCEEEEEEccCCCChHhH--------HHHHHHHHhcC---ceEEEeccccccchhhh
Q 021210 145 -LGNRKRILVLNREDMISMADR--------NAWATYFAKQG---TKVIFSNGQLGMGTMKL 193 (316)
Q Consensus 145 -l~~k~~IlVlNK~DLv~~~~~--------~~~~~~~~~~g---~~vi~iSa~~g~gi~~L 193 (316)
..+.|+++|+||+|+.+.++. ++..++....| ..++.+||++ .|+.++
T Consensus 112 ~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~ 171 (307)
T 3r7w_A 112 YSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKA 171 (307)
T ss_dssp HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHH
T ss_pred hCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHH
Confidence 226899999999999874332 22233344455 6789999998 555443
No 318
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.03 E-value=3.9e-06 Score=74.00 Aligned_cols=98 Identities=14% Similarity=0.049 Sum_probs=65.1
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHH---Hh-CCCCEEEEEEccCCCChHh--HHHHHHHH
Q 021210 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQ---WL-GNRKRILVLNREDMISMAD--RNAWATYF 172 (316)
Q Consensus 101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~--~i~~---~l-~~k~~IlVlNK~DLv~~~~--~~~~~~~~ 172 (316)
-+++|. .++..........+|.+++|.|..+..+..+. .+.. .. .+.|++||.||+||.+..+ .++..++.
T Consensus 67 wDtaGq-e~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a 145 (216)
T 4dkx_A 67 WDTAGL-ERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKA 145 (216)
T ss_dssp ECCSCT-TTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred EECCCc-hhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHH
Confidence 345665 45555556778999999999998765433221 1111 11 2568999999999965321 22233444
Q ss_pred HhcCceEEEeccccccchhhhHHHHHH
Q 021210 173 AKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 173 ~~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
.+.+..++.+||++|.|++++.+.|.+
T Consensus 146 ~~~~~~~~e~SAktg~nV~e~F~~i~~ 172 (216)
T 4dkx_A 146 KELNVMFIETSAKAGYNVKQLFRRVAA 172 (216)
T ss_dssp HHHTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHhCCeeEEEeCCCCcCHHHHHHHHHH
Confidence 556788899999999999998776543
No 319
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.02 E-value=4.9e-07 Score=90.42 Aligned_cols=57 Identities=30% Similarity=0.517 Sum_probs=44.2
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe----CCcEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~----~~~~~liDTPGi~ 273 (316)
++.+|+++|.+|+|||||+|+|.+... .....+|+|.+...+.+ +..+.|+||||..
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~-~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe 63 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQV-AAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHA 63 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHH-HHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-ccccCCceeEEEeEEEEEeCCCCEEEEEECCChH
Confidence 456799999999999999999997663 34467899988643322 3468999999964
No 320
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.02 E-value=7.1e-06 Score=71.07 Aligned_cols=56 Identities=21% Similarity=0.324 Sum_probs=37.2
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeE-EEEEeCC---cEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~-~~~~~~~---~~~liDTPGi~ 273 (316)
.++|+++|.+|||||||+|+|.+... .....|.+..+. ..+..+. .+.|+||||..
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 87 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYTASFEIDTQRIELSLWDTSGSP 87 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-CCCcCCccceeEEEEEEECCEEEEEEEEeCCCcH
Confidence 57899999999999999999997653 222223222222 1223322 47899999964
No 321
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.01 E-value=2.8e-05 Score=80.19 Aligned_cols=89 Identities=15% Similarity=0.008 Sum_probs=62.1
Q ss_pred CCcchhhhhhccccCCcceEEEecc---------ccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHH
Q 021210 72 GSIEAYEEECDWADLDADLYYWTKS---------LRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMD 142 (316)
Q Consensus 72 ~~~g~~~e~e~~~~~d~~~~~~~~~---------~~~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~ 142 (316)
+.|-...|++.++|++.....+.-. .-.+-++||| .++...+...+..+|.+|+|+|+..+.......+.
T Consensus 49 ~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~-~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~ 127 (704)
T 2rdo_7 49 TMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGH-VDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW 127 (704)
T ss_pred eecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeCCCc-cchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH
Confidence 3344445667778877766533321 1127789999 66778888899999999999999987654333333
Q ss_pred HHh--CCCCEEEEEEccCCCC
Q 021210 143 QWL--GNRKRILVLNREDMIS 161 (316)
Q Consensus 143 ~~l--~~k~~IlVlNK~DLv~ 161 (316)
... .+.|+++|+||+|+..
T Consensus 128 ~~~~~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 128 RQANKYKVPRIAFVNKMDRMG 148 (704)
T ss_pred HHHHHcCCCEEEEEeCCCccc
Confidence 332 2689999999999864
No 322
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.00 E-value=7.8e-06 Score=69.76 Aligned_cols=57 Identities=16% Similarity=0.332 Sum_probs=38.4
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCcee--eEEEEEeCC-c--EEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR--VLKWVRFGK-D--LEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~--~~~~~~~~~-~--~~liDTPGi~~ 274 (316)
.++++++|.+|||||||+|+|.+..... ...|.++. ....+.++. . +.++||||...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~-~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 90 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCC-SCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEECCCCcc
Confidence 5789999999999999999999865322 22233332 233344433 3 45699999854
No 323
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.00 E-value=6.5e-06 Score=71.62 Aligned_cols=56 Identities=16% Similarity=0.177 Sum_probs=36.6
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee-EE-EEEeC-C--cEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LK-WVRFG-K--DLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~-~~-~~~~~-~--~~~liDTPGi~ 273 (316)
..++|+++|.+|||||||+|+|.+.... .....|+.. .. .+..+ . .+.|+||||..
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 86 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVPTVFENYTACLETEEQRVELSLWDTSGSP 86 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEC--CEEEEEEEEECCSG
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCC--CCcCCeeeeeEEEEEEECCEEEEEEEEECCCCH
Confidence 3579999999999999999999976532 222222222 21 12222 2 47899999964
No 324
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.00 E-value=3.3e-06 Score=80.22 Aligned_cols=58 Identities=29% Similarity=0.382 Sum_probs=30.9
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCC------CceeeEE--EEEe--CC---cEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP------GVTRVLK--WVRF--GK---DLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p------gtT~~~~--~~~~--~~---~~~liDTPGi~ 273 (316)
..++|+++|.+|+|||||+|+|++......+..+ +.|.... .+.+ +. .+.++||||+.
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~g 106 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG 106 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-----
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccc
Confidence 3578999999999999999999876544333221 2233222 2111 11 47899999994
No 325
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.99 E-value=3.9e-06 Score=76.36 Aligned_cols=91 Identities=13% Similarity=0.133 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhhcCeEE-EEEeCCCCCCCCcH-HHHHHhC--CCCEEEEEEccCCCChHh-HHHHHHH-HHhc--C-ceE
Q 021210 109 KTEKELKDQLKLMDVVI-EVRDARIPLSTTHP-LMDQWLG--NRKRILVLNREDMISMAD-RNAWATY-FAKQ--G-TKV 179 (316)
Q Consensus 109 ~~~r~l~~~i~~aDlIl-~VvDar~~~~~~~~-~i~~~l~--~k~~IlVlNK~DLv~~~~-~~~~~~~-~~~~--g-~~v 179 (316)
.+...+...+..++.++ +|+|+..+....+. .+.+.+. +.|+++|+||+|+.+... ..++.+. +... + ..+
T Consensus 150 ~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 229 (299)
T 2aka_B 150 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV 229 (299)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEEC
T ss_pred HHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEE
Confidence 44555667788888655 79999877655543 3555553 679999999999986543 2222211 1111 2 356
Q ss_pred EEeccccccchhhhHHHHHH
Q 021210 180 IFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 180 i~iSa~~g~gi~~L~~~L~~ 199 (316)
+++||++|.|+++|.+.+..
T Consensus 230 ~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 230 VNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp CCCCCBCTTSCBCHHHHHHH
T ss_pred ECCChhhccccccHHHHHHH
Confidence 78999999999999887665
No 326
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.98 E-value=1e-05 Score=67.11 Aligned_cols=79 Identities=19% Similarity=0.162 Sum_probs=51.8
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCChHhHH-HHHHHHHhcCceEEEeccccccchhhhHH
Q 021210 119 KLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRN-AWATYFAKQGTKVIFSNGQLGMGTMKLSR 195 (316)
Q Consensus 119 ~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~~~~~-~~~~~~~~~g~~vi~iSa~~g~gi~~L~~ 195 (316)
..+|++++|+|+.... ....+...+ .+.|+++|.||+|+....... +..+.....+..++++||++|.|++++.+
T Consensus 80 ~~~~~~i~v~D~~~~~--~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~ 157 (165)
T 2wji_A 80 EKPDLVVNIVDATALE--RNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKK 157 (165)
T ss_dssp HCCSEEEEEEETTCHH--HHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHH
T ss_pred CCCCEEEEEecCCchh--HhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHHHHH
Confidence 4899999999987521 111111112 368999999999985432110 11122234467899999999999999887
Q ss_pred HHHH
Q 021210 196 LAKA 199 (316)
Q Consensus 196 ~L~~ 199 (316)
.+.+
T Consensus 158 ~l~~ 161 (165)
T 2wji_A 158 AISI 161 (165)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 327
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.96 E-value=3.1e-06 Score=80.74 Aligned_cols=47 Identities=21% Similarity=0.393 Sum_probs=37.9
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCccc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~ 274 (316)
+|+++|.+|+|||||+|+|+ ..|+|.+.....+ +..+.|+||||...
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~ 72 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPK 72 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTT
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHH
Confidence 79999999999999999998 3466766554444 34689999999864
No 328
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.96 E-value=1.6e-05 Score=70.80 Aligned_cols=102 Identities=18% Similarity=0.204 Sum_probs=62.9
Q ss_pred cccccchHHHH-----HHHHHHHHhhcCeEEEEEeCCCCCCCCcHH-H----HH--HhCCCCEEEEEEccCCCChHhHHH
Q 021210 100 VQWYPGHIAKT-----EKELKDQLKLMDVVIEVRDARIPLSTTHPL-M----DQ--WLGNRKRILVLNREDMISMADRNA 167 (316)
Q Consensus 100 i~~~Pgh~~~~-----~r~l~~~i~~aDlIl~VvDar~~~~~~~~~-i----~~--~l~~k~~IlVlNK~DLv~~~~~~~ 167 (316)
+-++||..... .+.+.+.+.. +++++|+|+.......+.. . .. ...+.|.++|+||+|+.+..+.++
T Consensus 113 iiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~~~~~ 191 (262)
T 1yrb_A 113 LIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKER 191 (262)
T ss_dssp EEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHHHHH
T ss_pred EEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccccHHH
Confidence 44567764332 2334445566 9999999987544332211 0 01 112689999999999987643221
Q ss_pred HHHH----------------------------HHhcC--ceEEEeccccccchhhhHHHHHHhhh
Q 021210 168 WATY----------------------------FAKQG--TKVIFSNGQLGMGTMKLSRLAKALAS 202 (316)
Q Consensus 168 ~~~~----------------------------~~~~g--~~vi~iSa~~g~gi~~L~~~L~~l~~ 202 (316)
..++ +.+.+ ..++++||++|.|+++|.+.+.+...
T Consensus 192 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 192 HRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 1111 12223 36899999999999999988776543
No 329
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.95 E-value=1.1e-06 Score=86.00 Aligned_cols=57 Identities=21% Similarity=0.331 Sum_probs=39.9
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCc-cc-----------------------------ccCCCCCceeeEEEEEe---CCc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRR-MC-----------------------------PAAPRPGVTRVLKWVRF---GKD 263 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~-~~-----------------------------~vs~~pgtT~~~~~~~~---~~~ 263 (316)
.++|+++|.+|+|||||+|+|++.. .. ......|+|.+.....+ +..
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~ 86 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 86 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence 5789999999999999999998541 00 00112688877543332 346
Q ss_pred EEEEeCCCcc
Q 021210 264 LEFLDSPGII 273 (316)
Q Consensus 264 ~~liDTPGi~ 273 (316)
+.|+||||..
T Consensus 87 ~~iiDtPGh~ 96 (458)
T 1f60_A 87 VTVIDAPGHR 96 (458)
T ss_dssp EEEEECCCCT
T ss_pred EEEEECCCcH
Confidence 8999999964
No 330
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.95 E-value=8.7e-06 Score=74.77 Aligned_cols=56 Identities=20% Similarity=0.149 Sum_probs=39.9
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEE--EEeC-Cc--EEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG-KD--LEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~--~~~~-~~--~~liDTPGi~~ 274 (316)
.++|+++|.+|||||||+|++.+.. ......+||.+... +..+ .. +.++||||...
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 215 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 215 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSC--CCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGG
T ss_pred eeEEEEECCCCCChHHHHHHHHhCC--CCcccCCcccceeEEEEEECCEEEEEEEEeCCCchh
Confidence 5789999999999999999998654 23445566665432 2232 23 45999999753
No 331
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.95 E-value=4.3e-06 Score=80.24 Aligned_cols=57 Identities=23% Similarity=0.328 Sum_probs=41.3
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCccc----c-----------cCCCCCceeeEEEEEe---CCcEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMC----P-----------AAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~----~-----------vs~~pgtT~~~~~~~~---~~~~~liDTPGi~ 273 (316)
.++|+++|.+|+|||||+|+|++.... . .....|+|.+.....+ +..+.|+||||..
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~ 77 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA 77 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH
Confidence 478999999999999999999863100 0 1114678887654443 3578999999974
No 332
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.94 E-value=1.3e-05 Score=79.73 Aligned_cols=53 Identities=13% Similarity=0.241 Sum_probs=35.2
Q ss_pred ccchhhhHHHHHHhhhhhhhhhcccCCCccceEEeEeccCCCCcchhHHhhhcCc
Q 021210 187 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 187 g~gi~~L~~~L~~l~~~~~~~r~~~~~~~~~~~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
..|+..+.++++.+...... .........+||+++|.+|||||||+|+|.+..
T Consensus 13 ~~g~~~i~~yl~~l~~~~~~--g~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~ 65 (535)
T 3dpu_A 13 KQGKEAVRQYFQSIEEARSK--GEALVHLQEIKVHLIGDGMAGKTSLLKQLIGET 65 (535)
T ss_dssp CSSHHHHHHHHHHHHHHHHT--TCCCBCCCEEEEEEESSSCSSHHHHHHHHHC--
T ss_pred HhCHHHHHHHHHHHHHhhcc--CcccccccceEEEEECCCCCCHHHHHHHHhcCC
Confidence 45677788877776542110 011012346899999999999999999999765
No 333
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.94 E-value=7.1e-06 Score=69.31 Aligned_cols=99 Identities=15% Similarity=0.095 Sum_probs=62.0
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc---HHHHHH---hCCCCEEEEEEccCCCChHhHH----HHHHH
Q 021210 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH---PLMDQW---LGNRKRILVLNREDMISMADRN----AWATY 171 (316)
Q Consensus 102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~---~~i~~~---l~~k~~IlVlNK~DLv~~~~~~----~~~~~ 171 (316)
+++|. .++.......+..+|++++|+|..++..+.+ ..+..+ ..+.|+++|.||+|+.+..... +..+.
T Consensus 62 Dt~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 140 (184)
T 2zej_A 62 DFAGR-EEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKE 140 (184)
T ss_dssp EECSH-HHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHH
T ss_pred ecCCC-HHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHH
Confidence 45665 4444434456788999999999876532111 111111 1367899999999998754432 22222
Q ss_pred HH-hcCce----EEEecccccc-chhhhHHHHHHhh
Q 021210 172 FA-KQGTK----VIFSNGQLGM-GTMKLSRLAKALA 201 (316)
Q Consensus 172 ~~-~~g~~----vi~iSa~~g~-gi~~L~~~L~~l~ 201 (316)
+. ..+.. ++.+||++|. |+++|.+.+.+..
T Consensus 141 ~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 141 LLNKRGFPAIRDYHFVNATEESDALAKLRKTIINES 176 (184)
T ss_dssp TTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred HHHhcCCcchhheEEEecccCchhHHHHHHHHHHHH
Confidence 32 23444 7899999996 8888887765543
No 334
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.93 E-value=2.7e-06 Score=83.97 Aligned_cols=57 Identities=23% Similarity=0.441 Sum_probs=35.0
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcc------cccCCCCCceeeEEE--EEe-CCcEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRM------CPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~------~~vs~~pgtT~~~~~--~~~-~~~~~liDTPGi~ 273 (316)
.++|+++|.+|+|||||+|+|++... ...+..+|+|.+... +.. +..+.|+||||..
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~ 84 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA 84 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChH
Confidence 57899999999999999999997651 234556788887532 333 3478999999973
No 335
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.93 E-value=1.1e-05 Score=74.14 Aligned_cols=103 Identities=11% Similarity=0.054 Sum_probs=64.1
Q ss_pred cccccchHH------------HHHHHHHHHHhhcCeEEEEEeC-CCCCCCCc-HHHHHHhC--CCCEEEEEEccCCCChH
Q 021210 100 VQWYPGHIA------------KTEKELKDQLKLMDVVIEVRDA-RIPLSTTH-PLMDQWLG--NRKRILVLNREDMISMA 163 (316)
Q Consensus 100 i~~~Pgh~~------------~~~r~l~~~i~~aDlIl~VvDa-r~~~~~~~-~~i~~~l~--~k~~IlVlNK~DLv~~~ 163 (316)
+-++||... .+.......+..+|++++|+|+ ..+....+ ..+.+.+. ++|+++|+||+|+.+..
T Consensus 135 lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~ 214 (315)
T 1jwy_B 135 LVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKG 214 (315)
T ss_dssp EEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSS
T ss_pred EEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcc
Confidence 567788642 3455566788999999999997 55544344 35666664 68999999999998654
Q ss_pred h-HHHHHHH-HHhcCce---EEEecccc---ccchhhhHHHHHHhhh
Q 021210 164 D-RNAWATY-FAKQGTK---VIFSNGQL---GMGTMKLSRLAKALAS 202 (316)
Q Consensus 164 ~-~~~~~~~-~~~~g~~---vi~iSa~~---g~gi~~L~~~L~~l~~ 202 (316)
. ..++.+. +...+.. ++++|+.+ +.|+.++.+.+..+.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 215 TDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK 261 (315)
T ss_dssp CCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred hHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence 3 2222211 1111123 34455555 6777777776665543
No 336
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.92 E-value=1.6e-05 Score=71.85 Aligned_cols=81 Identities=22% Similarity=0.178 Sum_probs=56.1
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHH-Hh-CCCCEEEEEEccCCCChHhHH-HHHHHHHhcCceEEEeccccccchhhhHH
Q 021210 119 KLMDVVIEVRDARIPLSTTHPLMDQ-WL-GNRKRILVLNREDMISMADRN-AWATYFAKQGTKVIFSNGQLGMGTMKLSR 195 (316)
Q Consensus 119 ~~aDlIl~VvDar~~~~~~~~~i~~-~l-~~k~~IlVlNK~DLv~~~~~~-~~~~~~~~~g~~vi~iSa~~g~gi~~L~~ 195 (316)
..+|++++|+|+.... ....+.. +. .+.|+++|+||+|+....... ...+.....|.+++++||++|.|+++|.+
T Consensus 82 ~~~d~ii~V~D~t~~~--~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~ 159 (258)
T 3a1s_A 82 GDADLVILVADSVNPE--QSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKE 159 (258)
T ss_dssp SCCSEEEEEEETTSCH--HHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHH
T ss_pred cCCCEEEEEeCCCchh--hHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHH
Confidence 5899999999998642 1222222 22 278999999999986432211 11223344678899999999999999988
Q ss_pred HHHHhh
Q 021210 196 LAKALA 201 (316)
Q Consensus 196 ~L~~l~ 201 (316)
.+.+..
T Consensus 160 ~i~~~~ 165 (258)
T 3a1s_A 160 KIVEYA 165 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 876654
No 337
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.92 E-value=5.1e-06 Score=80.69 Aligned_cols=25 Identities=40% Similarity=0.480 Sum_probs=22.4
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.++|+++|.+|+|||||+|+|++..
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~ 48 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDS 48 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhc
Confidence 4789999999999999999998653
No 338
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.92 E-value=1.8e-06 Score=85.69 Aligned_cols=58 Identities=26% Similarity=0.401 Sum_probs=43.8
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe---CCcEEEEeCCCccc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~~ 274 (316)
++.+|+++|.+|+|||||+|+|.+.. ...+..+|+|.+...+.+ +..+.|+||||...
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~-v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~ 63 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK-VASGEAGGITQHIGAYHVETENGMITFLDTPGHAA 63 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH-HSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC-CccccCCCeeEeEEEEEEEECCEEEEEEECCCcHH
Confidence 45679999999999999999998754 344555788877543333 44689999999753
No 339
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.91 E-value=2.2e-05 Score=80.70 Aligned_cols=85 Identities=16% Similarity=0.134 Sum_probs=54.0
Q ss_pred hhhhhccccCCcceEEEecccc--ccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEE
Q 021210 77 YEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRIL 152 (316)
Q Consensus 77 ~~e~e~~~~~d~~~~~~~~~~~--~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~Il 152 (316)
..|++.++|+......+..... .+-++||| .++...+...+..+|.+|+|+|+..+.......+...+ .+.|+++
T Consensus 54 ~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~-~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~il 132 (693)
T 2xex_A 54 EQEQDRGITITSAATTAAWEGHRVNIIDTPGH-VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIV 132 (693)
T ss_dssp ----------CCSEEEEEETTEEEEEECCCCC-SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEE
T ss_pred hhhhhcCceEeeeeEEEEECCeeEEEEECcCC-cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEE
Confidence 3455667777776654433222 37789999 45666777889999999999999987665444443333 2789999
Q ss_pred EEEccCCCCh
Q 021210 153 VLNREDMISM 162 (316)
Q Consensus 153 VlNK~DLv~~ 162 (316)
|+||+|+...
T Consensus 133 viNK~Dl~~~ 142 (693)
T 2xex_A 133 FVNKMDKLGA 142 (693)
T ss_dssp EEECTTSTTC
T ss_pred EEECCCcccc
Confidence 9999999753
No 340
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.88 E-value=9.8e-06 Score=83.99 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=63.3
Q ss_pred HHHHHHHHH-hhcCeEEEEEeCCCCCCCCcH-HHHHHhC--CCCEEEEEEccCCCChHhH-HHHHHH-HH--hcC-ceEE
Q 021210 110 TEKELKDQL-KLMDVVIEVRDARIPLSTTHP-LMDQWLG--NRKRILVLNREDMISMADR-NAWATY-FA--KQG-TKVI 180 (316)
Q Consensus 110 ~~r~l~~~i-~~aDlIl~VvDar~~~~~~~~-~i~~~l~--~k~~IlVlNK~DLv~~~~~-~~~~~~-~~--~~g-~~vi 180 (316)
..+.+...+ ..+|+|++|+|++.+....+. .+...+. ++|+++|+||+|+++.... ....+. +. +.+ ..++
T Consensus 176 i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV 255 (772)
T 3zvr_A 176 IRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVV 255 (772)
T ss_dssp HHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECC
T ss_pred HHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceE
Confidence 333444555 578999999999988777665 5666665 6899999999999876432 111110 00 123 3578
Q ss_pred EeccccccchhhhHHHHHH
Q 021210 181 FSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 181 ~iSa~~g~gi~~L~~~L~~ 199 (316)
++||++|.|+++|.+.+..
T Consensus 256 ~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 256 NRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp CCCCEESSSSEEHHHHHHH
T ss_pred EecccccccchhHHHHHHH
Confidence 8999999999999887765
No 341
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.88 E-value=7.1e-06 Score=78.95 Aligned_cols=40 Identities=28% Similarity=0.343 Sum_probs=30.1
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCccc--ccCCCCCceeeE
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC--PAAPRPGVTRVL 255 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~--~vs~~pgtT~~~ 255 (316)
..++|+++|.+|+|||||+|+|++.... .....+|+|.+.
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~ 50 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKI 50 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEE
Confidence 3578999999999999999999965322 223347888764
No 342
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.88 E-value=3.8e-06 Score=80.72 Aligned_cols=58 Identities=22% Similarity=0.311 Sum_probs=41.4
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCc--cc---c------c-----CCCCCceeeEEEEEe---CCcEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRR--MC---P------A-----APRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~--~~---~------v-----s~~pgtT~~~~~~~~---~~~~~liDTPGi~~ 274 (316)
.++|+++|.+|+|||||+|+|++.. .. . . ...+|+|.+.....+ +..+.|+||||...
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 5789999999999999999998731 00 0 0 013577877544333 35789999999854
No 343
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.88 E-value=7e-05 Score=64.08 Aligned_cols=84 Identities=19% Similarity=0.212 Sum_probs=60.0
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCChHhH----HHHHHHHHhcC--ceEEEeccccccch
Q 021210 119 KLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADR----NAWATYFAKQG--TKVIFSNGQLGMGT 190 (316)
Q Consensus 119 ~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~~~~----~~~~~~~~~~g--~~vi~iSa~~g~gi 190 (316)
..+|.+++++|+..+....+..+..++ .+.|.++|.||+|+.+..+. ....+.+.+.+ ..++++|++++.|+
T Consensus 107 ~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~ 186 (210)
T 1pui_A 107 QSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGV 186 (210)
T ss_dssp TTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSH
T ss_pred hcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCH
Confidence 578999999999887654344454444 36788999999999876542 22233333333 46789999999999
Q ss_pred hhhHHHHHHhhh
Q 021210 191 MKLSRLAKALAS 202 (316)
Q Consensus 191 ~~L~~~L~~l~~ 202 (316)
+++.+.+.++..
T Consensus 187 ~~l~~~l~~~~~ 198 (210)
T 1pui_A 187 DKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999998877643
No 344
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.87 E-value=2e-06 Score=85.85 Aligned_cols=58 Identities=21% Similarity=0.320 Sum_probs=38.3
Q ss_pred eEEeEeccCCCCcchhHHhhhcCccc---------------cc------CCCCCceeeEEEE--E-eCCcEEEEeCCCcc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMC---------------PA------APRPGVTRVLKWV--R-FGKDLEFLDSPGII 273 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~---------------~v------s~~pgtT~~~~~~--~-~~~~~~liDTPGi~ 273 (316)
.+|+|+|.+|+|||||+|+|+..... .+ ...+|+|...... . .+..+.|+||||..
T Consensus 14 r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~ 93 (528)
T 3tr5_A 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHA 93 (528)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCST
T ss_pred CEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCch
Confidence 47999999999999999999722111 01 1124666553222 2 24568999999986
Q ss_pred cC
Q 021210 274 PM 275 (316)
Q Consensus 274 ~~ 275 (316)
..
T Consensus 94 df 95 (528)
T 3tr5_A 94 DF 95 (528)
T ss_dssp TC
T ss_pred hH
Confidence 53
No 345
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.84 E-value=1.2e-05 Score=72.72 Aligned_cols=81 Identities=22% Similarity=0.330 Sum_probs=55.9
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHH-Hh-CC-CCEEEEEEccCCCChHhHH-HHHHHHHhcCceEEEeccccccchhhhH
Q 021210 119 KLMDVVIEVRDARIPLSTTHPLMDQ-WL-GN-RKRILVLNREDMISMADRN-AWATYFAKQGTKVIFSNGQLGMGTMKLS 194 (316)
Q Consensus 119 ~~aDlIl~VvDar~~~~~~~~~i~~-~l-~~-k~~IlVlNK~DLv~~~~~~-~~~~~~~~~g~~vi~iSa~~g~gi~~L~ 194 (316)
.++|++++|+|+..+. .+..+.. +. .+ .|+++|+||+|+.+..... ...+.....|.+++++||++|.|+++|.
T Consensus 80 ~~~d~vi~v~D~~~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~ 157 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM--RNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEELK 157 (271)
T ss_dssp TCCSEEEEEEEGGGHH--HHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHHH
T ss_pred cCCcEEEEEecCCcch--hhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHH
Confidence 6899999999998642 1222211 11 24 8999999999986543211 1122233457889999999999999998
Q ss_pred HHHHHhh
Q 021210 195 RLAKALA 201 (316)
Q Consensus 195 ~~L~~l~ 201 (316)
+.+....
T Consensus 158 ~~i~~~~ 164 (271)
T 3k53_A 158 RMIALMA 164 (271)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
No 346
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.84 E-value=3e-05 Score=79.88 Aligned_cols=91 Identities=16% Similarity=0.148 Sum_probs=57.3
Q ss_pred CCCcchhhhhhccccCCcceE--EEeccc-------cccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHH
Q 021210 71 NGSIEAYEEECDWADLDADLY--YWTKSL-------RPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLM 141 (316)
Q Consensus 71 ~~~~g~~~e~e~~~~~d~~~~--~~~~~~-------~~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i 141 (316)
.++|-...|+|.++|+..... +|.... =-+-++||| ..+..++...+.-+|-+|+|||+..++...-..+
T Consensus 51 ~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGH-vDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v 129 (709)
T 4fn5_A 51 ATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGH-VDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETV 129 (709)
T ss_dssp -----------------CCEEEEEECCTTSCSCCEEEEEECCCSC-TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH
T ss_pred ccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCC-cccHHHHHHHHHHhCeEEEEEECCCCCchhHHHH
Confidence 467777779999999988776 443221 127799999 7899999999999999999999999887655554
Q ss_pred HHHhC--CCCEEEEEEccCCCCh
Q 021210 142 DQWLG--NRKRILVLNREDMISM 162 (316)
Q Consensus 142 ~~~l~--~k~~IlVlNK~DLv~~ 162 (316)
.+... +.|.++++||+|....
T Consensus 130 ~~~a~~~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 130 WRQANKYGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp HHHHHHHTCCEEEEEECSSSTTC
T ss_pred HHHHHHcCCCeEEEEccccccCc
Confidence 44432 7899999999998643
No 347
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.83 E-value=2.5e-06 Score=77.97 Aligned_cols=81 Identities=15% Similarity=0.115 Sum_probs=54.3
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHh--CCCCEEEEEEccCCCChHhHH-HHHHHHHhcCceEEEeccccccchhhhHH
Q 021210 119 KLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRN-AWATYFAKQGTKVIFSNGQLGMGTMKLSR 195 (316)
Q Consensus 119 ~~aDlIl~VvDar~~~~~~~~~i~~~l--~~k~~IlVlNK~DLv~~~~~~-~~~~~~~~~g~~vi~iSa~~g~gi~~L~~ 195 (316)
..+|++++|+|+.+.. ....+...+ .+.|+++|+||+|+....... ...+.....|.+++++||++|.|+++|.+
T Consensus 79 ~~~d~vi~V~D~t~~e--~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~ 156 (272)
T 3b1v_A 79 QRADSILNVVDATNLE--RNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVK 156 (272)
T ss_dssp TCCSEEEEEEEGGGHH--HHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHHHH
T ss_pred CCCCEEEEEecCCchH--hHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHHHH
Confidence 3699999999997531 122222222 378999999999986432111 11122234578899999999999999988
Q ss_pred HHHHhh
Q 021210 196 LAKALA 201 (316)
Q Consensus 196 ~L~~l~ 201 (316)
.+....
T Consensus 157 ~i~~~~ 162 (272)
T 3b1v_A 157 KAAHTT 162 (272)
T ss_dssp HHHHSC
T ss_pred HHHHHH
Confidence 776543
No 348
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.82 E-value=5.1e-06 Score=80.75 Aligned_cols=58 Identities=31% Similarity=0.440 Sum_probs=34.6
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcc-c-----------------------------ccCCCCCceeeEEEEEe---CCc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRM-C-----------------------------PAAPRPGVTRVLKWVRF---GKD 263 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~-~-----------------------------~vs~~pgtT~~~~~~~~---~~~ 263 (316)
.++|+++|.+|+|||||+|+|+.... . .....+|+|.+.....+ +..
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~ 85 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF 85 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeE
Confidence 47899999999999999999985410 0 01124688888654333 456
Q ss_pred EEEEeCCCccc
Q 021210 264 LEFLDSPGIIP 274 (316)
Q Consensus 264 ~~liDTPGi~~ 274 (316)
+.|+||||...
T Consensus 86 ~~iiDtpG~~~ 96 (435)
T 1jny_A 86 FTIIDAPGHRD 96 (435)
T ss_dssp EEECCCSSSTT
T ss_pred EEEEECCCcHH
Confidence 89999999753
No 349
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.81 E-value=8.2e-06 Score=76.81 Aligned_cols=23 Identities=52% Similarity=0.801 Sum_probs=20.5
Q ss_pred ceEEeEeccCCCCcchhHHhhhc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLK 239 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~ 239 (316)
...++++|.||+|||||+|+|.+
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999983
No 350
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.80 E-value=1.4e-05 Score=76.93 Aligned_cols=39 Identities=31% Similarity=0.362 Sum_probs=27.5
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCccc--ccCCCCCceeeE
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMC--PAAPRPGVTRVL 255 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~--~vs~~pgtT~~~ 255 (316)
.++|+++|.+|+|||||+|+|.+.... .....+|+|.+.
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~ 48 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRL 48 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCC
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEe
Confidence 578999999999999999999965422 223347888764
No 351
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.79 E-value=2.9e-05 Score=72.96 Aligned_cols=96 Identities=11% Similarity=0.067 Sum_probs=58.5
Q ss_pred cccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHH----hc
Q 021210 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFA----KQ 175 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~----~~ 175 (316)
+-++||+.. ... .....+|++++|+|+..+..... +.....+.|.++|+||+|+.+........+.+. ..
T Consensus 153 liDTpG~~~-~~~---~~~~~aD~vl~Vvd~~~~~~~~~--l~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~ 226 (341)
T 2p67_A 153 IVETVGVGQ-SET---EVARMVDCFISLQIAGGGDDLQG--IKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHIL 226 (341)
T ss_dssp EEEEECCTT-HHH---HHHTTCSEEEEEECC------CC--CCHHHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHS
T ss_pred EEeCCCccc-hHH---HHHHhCCEEEEEEeCCccHHHHH--HHHhhhcccCEEEEECCCCCChHHHHHHHHHHHHHHHhc
Confidence 446677632 222 24689999999999875432111 100111457899999999987544332222222 11
Q ss_pred -------CceEEEeccccccchhhhHHHHHHhh
Q 021210 176 -------GTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 176 -------g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
...++++||++|.|+++|.+.+.+..
T Consensus 227 ~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 227 RRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp CCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred cccccCCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 34678999999999999998877654
No 352
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.78 E-value=2.1e-05 Score=69.23 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=33.9
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCCCceee--EEEEEeCC---cEEEEeCCCcc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~--~~~~~~~~---~~~liDTPGi~ 273 (316)
..||+++|.+|||||||++++..... .....|.+..+ ...+..+. .+.|+||+|--
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~f-~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe 73 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCC-C----------CEEEEEECSSCEEEEEEECCSCTT
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCCC-CCCcCCccceEEEEEEEEecceEEEEEEEECCCch
Confidence 46899999999999999999986542 22222322222 22233322 36799999964
No 353
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.78 E-value=3.1e-05 Score=67.81 Aligned_cols=82 Identities=15% Similarity=0.045 Sum_probs=53.2
Q ss_pred HhhcCeEEEEEeCCCCCCCCcH-HHH-HHh-----CCCCEEEEEEccCCCChHh--HHHHHHHHHhcCceEEEecccccc
Q 021210 118 LKLMDVVIEVRDARIPLSTTHP-LMD-QWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGM 188 (316)
Q Consensus 118 i~~aDlIl~VvDar~~~~~~~~-~i~-~~l-----~~k~~IlVlNK~DLv~~~~--~~~~~~~~~~~g~~vi~iSa~~g~ 188 (316)
...+|.+|+|+|..+..+..+. .+. .+. .+.|+++|.||+||.+..+ .++...+....+..++.+||++|.
T Consensus 109 ~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~ 188 (211)
T 2g3y_A 109 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQH 188 (211)
T ss_dssp CCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 4668999999998754322111 111 111 2579999999999964321 112122233456788999999999
Q ss_pred chhhhHHHHHH
Q 021210 189 GTMKLSRLAKA 199 (316)
Q Consensus 189 gi~~L~~~L~~ 199 (316)
|++++.+.+.+
T Consensus 189 ~v~elf~~l~~ 199 (211)
T 2g3y_A 189 NVKELFEGIVR 199 (211)
T ss_dssp SHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99998877654
No 354
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.73 E-value=1.5e-05 Score=74.98 Aligned_cols=23 Identities=30% Similarity=0.626 Sum_probs=20.5
Q ss_pred ceEEeEeccCCCCcchhHHhhhc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLK 239 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~ 239 (316)
...++++|.+|+|||||+|.|.+
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999963
No 355
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.73 E-value=1.1e-05 Score=69.72 Aligned_cols=89 Identities=16% Similarity=0.210 Sum_probs=46.7
Q ss_pred cccccchHHHHHHHHHHHHhh----cCeEEEEEeCC-CCCCCC--cHHHHHHh--------CCCCEEEEEEccCCCChHh
Q 021210 100 VQWYPGHIAKTEKELKDQLKL----MDVVIEVRDAR-IPLSTT--HPLMDQWL--------GNRKRILVLNREDMISMAD 164 (316)
Q Consensus 100 i~~~Pgh~~~~~r~l~~~i~~----aDlIl~VvDar-~~~~~~--~~~i~~~l--------~~k~~IlVlNK~DLv~~~~ 164 (316)
+-++||+ .++...+...+.. +|++|+|+|+. ++.+.. ...+..++ .+.|+++|+||+|+.+...
T Consensus 59 l~Dt~G~-~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 59 LVDFPGH-VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp EEECCCC-GGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred EEECCCc-HHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 4567887 3344444455544 99999999998 433221 12222222 3678999999999986543
Q ss_pred HHHHHH-------HH-HhcCceEEEeccccccc
Q 021210 165 RNAWAT-------YF-AKQGTKVIFSNGQLGMG 189 (316)
Q Consensus 165 ~~~~~~-------~~-~~~g~~vi~iSa~~g~g 189 (316)
..++.+ .+ ...+..++.+|++.|.+
T Consensus 138 ~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 138 PSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 222211 11 22234567889988765
No 356
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.72 E-value=8.4e-06 Score=78.34 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=23.1
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
..++|+++|.+|+|||||+|+|++..
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcc
Confidence 35789999999999999999999743
No 357
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.71 E-value=7e-05 Score=77.06 Aligned_cols=101 Identities=13% Similarity=0.117 Sum_probs=67.3
Q ss_pred cccccchHHH--HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH-HHHHhC--CCCEEEEEEccCCCChH--------hHH
Q 021210 100 VQWYPGHIAK--TEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQWLG--NRKRILVLNREDMISMA--------DRN 166 (316)
Q Consensus 100 i~~~Pgh~~~--~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~-i~~~l~--~k~~IlVlNK~DLv~~~--------~~~ 166 (316)
+-++||.... ..+.+...+.++|++|+|+|+..+.+..+.. +...+. ++|+++|+||+|+.... +.+
T Consensus 178 LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~ 257 (695)
T 2j69_A 178 IVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQ 257 (695)
T ss_dssp EEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCHHHHH
T ss_pred EEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccccccChhhHHHHH
Confidence 6788997432 2345567889999999999998876654443 333443 67899999999997543 111
Q ss_pred H----HHH----HHHhc---------CceEEEeccc--------------cccchhhhHHHHHHh
Q 021210 167 A----WAT----YFAKQ---------GTKVIFSNGQ--------------LGMGTMKLSRLAKAL 200 (316)
Q Consensus 167 ~----~~~----~~~~~---------g~~vi~iSa~--------------~g~gi~~L~~~L~~l 200 (316)
. ..+ .+... ...++++||+ +|.|+++|.+.+...
T Consensus 258 ~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~ 322 (695)
T 2j69_A 258 ASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTF 322 (695)
T ss_dssp HHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHH
Confidence 1 111 12111 1358999999 999999987766543
No 358
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.69 E-value=8.9e-05 Score=65.45 Aligned_cols=100 Identities=13% Similarity=0.060 Sum_probs=55.4
Q ss_pred cccccchH----------HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh----C---CCCEEEEEEccCCCCh
Q 021210 100 VQWYPGHI----------AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL----G---NRKRILVLNREDMISM 162 (316)
Q Consensus 100 i~~~Pgh~----------~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l----~---~k~~IlVlNK~DLv~~ 162 (316)
+-++||.. .++.+.+......+|++|+|+|+... +..+......+ . .+|+++|+||+|+.+.
T Consensus 82 liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~ 160 (239)
T 3lxx_A 82 VVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRY-TEEEHKATEKILKMFGERARSFMILIFTRKDDLGD 160 (239)
T ss_dssp EEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCC-SSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC--
T ss_pred EEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCC-CHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc
Confidence 66788852 22333333334567999999998743 33333222222 1 3589999999999865
Q ss_pred HhHH--------HHHHHHHhcCceEEEeccccc-----cchhhhHHHHHHh
Q 021210 163 ADRN--------AWATYFAKQGTKVIFSNGQLG-----MGTMKLSRLAKAL 200 (316)
Q Consensus 163 ~~~~--------~~~~~~~~~g~~vi~iSa~~g-----~gi~~L~~~L~~l 200 (316)
.... ...+...+.+..+++++...+ .++.+|.+.+..+
T Consensus 161 ~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~ 211 (239)
T 3lxx_A 161 TNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRV 211 (239)
T ss_dssp ----------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHH
Confidence 4433 223334455666777766533 4566666555444
No 359
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.69 E-value=1.2e-05 Score=82.85 Aligned_cols=59 Identities=20% Similarity=0.350 Sum_probs=36.1
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCccc-----------ccCC------CCCceeeEEEE--Ee-CCcEEEEeCCCcccC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----------PAAP------RPGVTRVLKWV--RF-GKDLEFLDSPGIIPM 275 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~-----------~vs~------~pgtT~~~~~~--~~-~~~~~liDTPGi~~~ 275 (316)
..+|+++|.+|+|||||+|+|+..... .+.+ .+|+|...... .. +..+.|+||||....
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 457999999999999999999852111 1111 35666654322 22 456899999999753
No 360
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.67 E-value=1.8e-05 Score=79.04 Aligned_cols=59 Identities=17% Similarity=0.289 Sum_probs=35.9
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCccc---------------ccC------CCCCceeeEEE--E-EeCCcEEEEeCCCc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMC---------------PAA------PRPGVTRVLKW--V-RFGKDLEFLDSPGI 272 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~---------------~vs------~~pgtT~~~~~--~-~~~~~~~liDTPGi 272 (316)
..+|+++|.+|+|||||+|+|+..... .+. ...|+|..... + ..+..+.|+||||.
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 357999999999999999999863211 111 13455544221 2 22456899999998
Q ss_pred ccC
Q 021210 273 IPM 275 (316)
Q Consensus 273 ~~~ 275 (316)
...
T Consensus 93 ~df 95 (529)
T 2h5e_A 93 EDF 95 (529)
T ss_dssp TTC
T ss_pred hhH
Confidence 643
No 361
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.67 E-value=3.7e-05 Score=68.75 Aligned_cols=101 Identities=12% Similarity=0.078 Sum_probs=61.9
Q ss_pred cccccchHH------H----HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh----C---CCCEEEEEE-ccCCCC
Q 021210 100 VQWYPGHIA------K----TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL----G---NRKRILVLN-REDMIS 161 (316)
Q Consensus 100 i~~~Pgh~~------~----~~r~l~~~i~~aDlIl~VvDar~~~~~~~~~i~~~l----~---~k~~IlVlN-K~DLv~ 161 (316)
+-++||+.. + ..+.+...+..+|++|+|+|+.. +......+..++ . .+|.++|+| |+|+.+
T Consensus 75 iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 75 IIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG 153 (260)
T ss_dssp EEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred EEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC
Confidence 566788632 1 23344456678999999999975 333333332322 2 457888888 999975
Q ss_pred hHhHHHH---------HHHHHhcCce---E--EEeccccccchhhhHHHHHHhhh
Q 021210 162 MADRNAW---------ATYFAKQGTK---V--IFSNGQLGMGTMKLSRLAKALAS 202 (316)
Q Consensus 162 ~~~~~~~---------~~~~~~~g~~---v--i~iSa~~g~gi~~L~~~L~~l~~ 202 (316)
.. ...+ .+.....+.. + +++||+.|.|+++|.+.+..+..
T Consensus 154 ~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~ 207 (260)
T 2xtp_A 154 GS-LMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLM 207 (260)
T ss_dssp CC-HHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cc-HHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHH
Confidence 32 2221 1123333321 2 67899999999999888776543
No 362
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.67 E-value=3.7e-05 Score=64.48 Aligned_cols=83 Identities=19% Similarity=0.143 Sum_probs=53.4
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHh-CCCCEEEEEEccCCCChHhHH-HHHHHHHhcCceEEEeccccccchhhhHHH
Q 021210 119 KLMDVVIEVRDARIPLSTTHPLMDQWL-GNRKRILVLNREDMISMADRN-AWATYFAKQGTKVIFSNGQLGMGTMKLSRL 196 (316)
Q Consensus 119 ~~aDlIl~VvDar~~~~~~~~~i~~~l-~~k~~IlVlNK~DLv~~~~~~-~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~ 196 (316)
..+|++++|+|+.... .....+..+. .+.|+++|.||+|+....... ...+.....+..++++||++|.|++++.+.
T Consensus 84 ~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 162 (188)
T 2wjg_A 84 EKPDLVVNIVDATALE-RNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKA 162 (188)
T ss_dssp HCCSEEEEEEEGGGHH-HHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHH
T ss_pred cCCCEEEEEecchhHH-HHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHHHHH
Confidence 4599999999987421 0011111222 267999999999986432111 112222344678999999999999999887
Q ss_pred HHHhhh
Q 021210 197 AKALAS 202 (316)
Q Consensus 197 L~~l~~ 202 (316)
+.....
T Consensus 163 i~~~~~ 168 (188)
T 2wjg_A 163 ISIAVK 168 (188)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 766543
No 363
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.67 E-value=2.2e-05 Score=74.21 Aligned_cols=22 Identities=55% Similarity=0.741 Sum_probs=20.3
Q ss_pred ceEEeEeccCCCCcchhHHhhh
Q 021210 217 AVRAGIVGYPNVGKSSLINRLL 238 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~ 238 (316)
...|+++|.||||||||+|+|.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~ 100 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALG 100 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 5679999999999999999996
No 364
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.66 E-value=7.5e-05 Score=72.32 Aligned_cols=88 Identities=25% Similarity=0.309 Sum_probs=61.9
Q ss_pred HHHHhhcCeEEEEEeCC-CCCCCC---cHHHHHH---hCCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEeccccc
Q 021210 115 KDQLKLMDVVIEVRDAR-IPLSTT---HPLMDQW---LGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLG 187 (316)
Q Consensus 115 ~~~i~~aDlIl~VvDar-~~~~~~---~~~i~~~---l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g 187 (316)
.+.++++|.+|+++|+. .+.... ..++..+ +..+|.++|+||+|+........+.+.+...+..++++||+++
T Consensus 230 l~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g 309 (416)
T 1udx_A 230 LRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTG 309 (416)
T ss_dssp HHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTC
T ss_pred HHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCc
Confidence 34578899999999985 221111 1112222 2368999999999998764445555556556778999999999
Q ss_pred cchhhhHHHHHHhhh
Q 021210 188 MGTMKLSRLAKALAS 202 (316)
Q Consensus 188 ~gi~~L~~~L~~l~~ 202 (316)
.|+++|.+.+.+...
T Consensus 310 ~gi~eL~~~i~~~l~ 324 (416)
T 1udx_A 310 AGLPALKEALHALVR 324 (416)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999888776554
No 365
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.66 E-value=2.7e-05 Score=70.98 Aligned_cols=58 Identities=26% Similarity=0.380 Sum_probs=34.3
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccC-------CCCCceeeE------EEEEeCCcEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAA-------PRPGVTRVL------KWVRFGKDLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs-------~~pgtT~~~------~~~~~~~~~~liDTPGi~~ 274 (316)
.++++++|.+|+|||||+|+|.+......+ +.+.+++.. +...+...+.++|+||+..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~ 72 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGD 72 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--C
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhh
Confidence 357999999999999999999985433322 223333211 1111234678999999964
No 366
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.64 E-value=1.1e-05 Score=79.28 Aligned_cols=58 Identities=24% Similarity=0.224 Sum_probs=32.1
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCccc------------------------cc------CCCCCceeeEEE--EEe-CCc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMC------------------------PA------APRPGVTRVLKW--VRF-GKD 263 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~------------------------~v------s~~pgtT~~~~~--~~~-~~~ 263 (316)
.++|+++|.+|+|||||+|+|+..... .+ ....|+|.+... +.. +..
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~ 122 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR 122 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeE
Confidence 578999999999999999999742110 00 113577877542 222 346
Q ss_pred EEEEeCCCccc
Q 021210 264 LEFLDSPGIIP 274 (316)
Q Consensus 264 ~~liDTPGi~~ 274 (316)
+.|+||||...
T Consensus 123 ~~iiDtPGh~~ 133 (467)
T 1r5b_A 123 FSLLDAPGHKG 133 (467)
T ss_dssp EEECCCCC---
T ss_pred EEEEECCCcHH
Confidence 89999999753
No 367
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.61 E-value=0.00013 Score=68.84 Aligned_cols=84 Identities=10% Similarity=0.053 Sum_probs=52.3
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChHhHH----HHHHHHHh-------cCceEEEecc
Q 021210 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRN----AWATYFAK-------QGTKVIFSNG 184 (316)
Q Consensus 116 ~~i~~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~~~~----~~~~~~~~-------~g~~vi~iSa 184 (316)
...+.+|++++|+|+..+... ..+...+...+.++|+||+|+.+..... .+...+.. ...+++++||
T Consensus 183 ~l~~~~d~vl~V~d~~~~~~~--~~i~~~il~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA 260 (349)
T 2www_A 183 AVADMVDMFVLLLPPAGGDEL--QGIKRGIIEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISA 260 (349)
T ss_dssp HHHTTCSEEEEEECCC--------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCT
T ss_pred hHHhhCCEEEEEEcCCcchhH--HHhHHHHHhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEec
Confidence 346799999999998765321 1122223356889999999997643322 12211111 1246789999
Q ss_pred ccccchhhhHHHHHHhh
Q 021210 185 QLGMGTMKLSRLAKALA 201 (316)
Q Consensus 185 ~~g~gi~~L~~~L~~l~ 201 (316)
++|.|+++|.+.+.++.
T Consensus 261 ~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 261 RSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp TTCTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999998887754
No 368
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.60 E-value=5.9e-05 Score=73.22 Aligned_cols=57 Identities=21% Similarity=0.305 Sum_probs=38.6
Q ss_pred eEEeEeccCCCCcchhHHhhhcCccc---ccCCCCCceeeEEEEEe-C----CcEEEEeCCCccc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMC---PAAPRPGVTRVLKWVRF-G----KDLEFLDSPGIIP 274 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~---~vs~~pgtT~~~~~~~~-~----~~~~liDTPGi~~ 274 (316)
++++++|.+|+|||||+|+|.+.... .....|+.++....+.. . ..+.++||||+..
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhh
Confidence 45899999999999999999987421 11223566665332222 1 2578999999964
No 369
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.59 E-value=1.6e-05 Score=80.43 Aligned_cols=56 Identities=21% Similarity=0.421 Sum_probs=36.9
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccccCCCC-CceeeE--EEEEeC-------------------CcEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-GVTRVL--KWVRFG-------------------KDLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~p-gtT~~~--~~~~~~-------------------~~~~liDTPGi~~ 274 (316)
+.+|+++|.+|+|||||+|+|++... ....| |+|.+. ..+... ..+.|+||||...
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v--~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAV--ASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH--SCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccC--ccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 56899999999999999999997532 22233 565542 222110 1389999999743
No 370
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.59 E-value=3.5e-05 Score=71.25 Aligned_cols=58 Identities=29% Similarity=0.348 Sum_probs=30.1
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcccccCCCCC------ceee--EEEEEe-----CCcEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG------VTRV--LKWVRF-----GKDLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pg------tT~~--~~~~~~-----~~~~~liDTPGi~ 273 (316)
..++|+++|.+|||||||+|+|.+.+....+..+. .|.. ...+.. ...+.++||||+.
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~ 87 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG 87 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhh
Confidence 35789999999999999999998763333322210 1211 111111 2257899999994
No 371
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.58 E-value=9.9e-05 Score=71.39 Aligned_cols=57 Identities=26% Similarity=0.211 Sum_probs=35.8
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccc----cCCCCCceeeEEEEEe--CCcEEEEeCCCccc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCP----AAPRPGVTRVLKWVRF--GKDLEFLDSPGIIP 274 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~----vs~~pgtT~~~~~~~~--~~~~~liDTPGi~~ 274 (316)
..++++|.+|+|||||+|+|.|..... .-....+|+....+.. ..++.+.|+||+..
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~ 132 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGS 132 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGG
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccc
Confidence 469999999999999999999843211 1111224443222222 23689999999864
No 372
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.56 E-value=0.00017 Score=64.38 Aligned_cols=102 Identities=13% Similarity=0.031 Sum_probs=61.8
Q ss_pred cccccchH-------HHHHHHHHHH----HhhcCeEEEEEeCCCCCCCCcHHHHHHhC--------CCCEEEEEEccCCC
Q 021210 100 VQWYPGHI-------AKTEKELKDQ----LKLMDVVIEVRDARIPLSTTHPLMDQWLG--------NRKRILVLNREDMI 160 (316)
Q Consensus 100 i~~~Pgh~-------~~~~r~l~~~----i~~aDlIl~VvDar~~~~~~~~~i~~~l~--------~k~~IlVlNK~DLv 160 (316)
+.++||.. .++.+.+... ...+|++|+|+|+.. ++..+..+.+++. +.+++++.||+|+.
T Consensus 74 liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~ 152 (247)
T 3lxw_A 74 VVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLA 152 (247)
T ss_dssp EEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT
T ss_pred EEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcC
Confidence 66778841 1223334333 389999999999974 3333333333321 56899999999997
Q ss_pred ChHh---H-----HHHHHHHHhcCceEEEecccc-----ccchhhhHHHHHHhhh
Q 021210 161 SMAD---R-----NAWATYFAKQGTKVIFSNGQL-----GMGTMKLSRLAKALAS 202 (316)
Q Consensus 161 ~~~~---~-----~~~~~~~~~~g~~vi~iSa~~-----g~gi~~L~~~L~~l~~ 202 (316)
+... + +...+...+.|..++++++.. +.|+++|.+.+.++..
T Consensus 153 ~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 153 GGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp TCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHH
Confidence 5321 1 123334445566666666543 5788888877766654
No 373
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.49 E-value=0.00021 Score=60.88 Aligned_cols=83 Identities=13% Similarity=0.003 Sum_probs=53.3
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcH-H----HHHHh--CCCCEEEEEEccCCCChHh--HHHHHHHHHhcCceEEEeccccc
Q 021210 117 QLKLMDVVIEVRDARIPLSTTHP-L----MDQWL--GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLG 187 (316)
Q Consensus 117 ~i~~aDlIl~VvDar~~~~~~~~-~----i~~~l--~~k~~IlVlNK~DLv~~~~--~~~~~~~~~~~g~~vi~iSa~~g 187 (316)
....+|.+++|+|..+..+..+. . +.... .+.|+++|.||+|+..... .++...+....+..++.+||++|
T Consensus 77 ~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g 156 (192)
T 2cjw_A 77 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQ 156 (192)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTT
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccC
Confidence 35678999999998764332211 1 11211 2579999999999964321 11112222344567899999999
Q ss_pred cchhhhHHHHHH
Q 021210 188 MGTMKLSRLAKA 199 (316)
Q Consensus 188 ~gi~~L~~~L~~ 199 (316)
.|++++.+.+.+
T Consensus 157 ~~v~~lf~~l~~ 168 (192)
T 2cjw_A 157 HNVKELFEGIVR 168 (192)
T ss_dssp BSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999998876654
No 374
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.48 E-value=9.7e-05 Score=63.88 Aligned_cols=80 Identities=9% Similarity=-0.022 Sum_probs=53.3
Q ss_pred hcCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChH--hHHHHHHHHHhc--CceEEEeccccccchhhhHH
Q 021210 120 LMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA--DRNAWATYFAKQ--GTKVIFSNGQLGMGTMKLSR 195 (316)
Q Consensus 120 ~aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~--~~~~~~~~~~~~--g~~vi~iSa~~g~gi~~L~~ 195 (316)
.++.+++|+|+..+.. .........+.|.++|+||+|+.+.. +..+..+.+... +..++++||++|.|+++|.+
T Consensus 129 ~~~~~i~vvd~~~~~~--~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~ 206 (221)
T 2wsm_A 129 GENYRVVMVSVTEGDD--VVEKHPEIFRVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWID 206 (221)
T ss_dssp SCSEEEEEEEGGGCTT--HHHHCHHHHHTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHH
T ss_pred ccCcEEEEEeCCCcch--hhhhhhhhhhcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHH
Confidence 4578999999986532 11110111257899999999986432 233444444443 36789999999999999988
Q ss_pred HHHHhh
Q 021210 196 LAKALA 201 (316)
Q Consensus 196 ~L~~l~ 201 (316)
.+.+..
T Consensus 207 ~l~~~~ 212 (221)
T 2wsm_A 207 FLRGIL 212 (221)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 375
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.47 E-value=3.7e-05 Score=73.97 Aligned_cols=48 Identities=19% Similarity=0.159 Sum_probs=36.0
Q ss_pred CCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEeccccccchhhhH
Q 021210 147 NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLS 194 (316)
Q Consensus 147 ~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~ 194 (316)
.+|+++|+||+|+.......++.+.+...+..++++||+.+.|+.+|.
T Consensus 214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~ 261 (397)
T 1wxq_A 214 NKPMVIAANKADAASDEQIKRLVREEEKRGYIVIPTSAAAELTLRKAA 261 (397)
T ss_dssp HSCEEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCS
T ss_pred CCCEEEEEeCccccchHHHHHHHHHHhhcCCcEEEEeccchhhHHHHH
Confidence 489999999999985444445555554446689999999999887653
No 376
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.42 E-value=5.8e-05 Score=77.60 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=34.7
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCccc-----cc------CC------CCCceeeEEEEE---eCCcEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----PA------AP------RPGVTRVLKWVR---FGKDLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~-----~v------s~------~pgtT~~~~~~~---~~~~~~liDTPGi~~ 274 (316)
..+|+++|.+|+|||||+|+|+..... .+ .+ ..|+|....... .+..+.|+||||...
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 468999999999999999999842110 11 11 346665533222 245689999999864
No 377
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.41 E-value=5.4e-05 Score=81.49 Aligned_cols=58 Identities=22% Similarity=0.367 Sum_probs=36.1
Q ss_pred cceEEeEeccCCCCcchhHHhhhcCcc----c-----------ccCCCCCceeeEEEEEe---CCcEEEEeCCCcc
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKRRM----C-----------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~~~----~-----------~vs~~pgtT~~~~~~~~---~~~~~liDTPGi~ 273 (316)
..++|+++|.+|+|||||+|+|++... . ......|+|.+...+.+ +..+.|+||||..
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe 370 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA 370 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH
Confidence 458999999999999999999986410 0 11134677776532222 3578999999963
No 378
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.40 E-value=5.4e-05 Score=73.36 Aligned_cols=60 Identities=23% Similarity=0.226 Sum_probs=34.4
Q ss_pred ccceEEeEeccCCCCcchhHHhhhcCcccccCC------CCCcee-eEEEEEe-----CCcEEEEeCCCccc
Q 021210 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP------RPGVTR-VLKWVRF-----GKDLEFLDSPGIIP 274 (316)
Q Consensus 215 ~~~~~i~ivG~pNvGKSTLiN~L~~~~~~~vs~------~pgtT~-~~~~~~~-----~~~~~liDTPGi~~ 274 (316)
+..++|+++|.+|+|||||+|+|.+......+. .+.++. +...+.+ ...+.++||||+..
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~ 100 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD 100 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhh
Confidence 346789999999999999999999865422210 112222 1111111 12578999999964
No 379
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.37 E-value=7e-05 Score=78.65 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.6
Q ss_pred eEEeEeccCCCCcchhHHhhhcCc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.+|+++|.+|+|||||+|+|+...
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~~ 43 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQRA 43 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999998753
No 380
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.35 E-value=6.7e-05 Score=75.90 Aligned_cols=58 Identities=26% Similarity=0.392 Sum_probs=29.5
Q ss_pred eEEeEeccCCCCcchhHHhhhcCcccc--------c------CCCCCceeeEEEEEe------C--CcEEEEeCCCcccC
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRRMCP--------A------APRPGVTRVLKWVRF------G--KDLEFLDSPGIIPM 275 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~~~~--------v------s~~pgtT~~~~~~~~------~--~~~~liDTPGi~~~ 275 (316)
.+|+++|.+|+|||||+++|+...... + ....|+|.......+ + ..+.|+||||..+.
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF 84 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF 84 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH
Confidence 479999999999999999998632111 1 112466765332222 1 25789999998653
No 381
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.35 E-value=1.9e-05 Score=68.41 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=21.3
Q ss_pred ceEEeEeccCCCCcchhHHhhhcC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~ 240 (316)
..+|+++|.+|||||||+|+|.+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999864
No 382
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.34 E-value=7.3e-05 Score=70.41 Aligned_cols=91 Identities=12% Similarity=0.139 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhh-cCeEEEEEeCCCCCCCCcH-HHHHHhC--CCCEEEEEEccCCCChHh-HHHHHHH-H--HhcC-ceE
Q 021210 109 KTEKELKDQLKL-MDVVIEVRDARIPLSTTHP-LMDQWLG--NRKRILVLNREDMISMAD-RNAWATY-F--AKQG-TKV 179 (316)
Q Consensus 109 ~~~r~l~~~i~~-aDlIl~VvDar~~~~~~~~-~i~~~l~--~k~~IlVlNK~DLv~~~~-~~~~~~~-~--~~~g-~~v 179 (316)
++.+.+...+.. .++|++|+|+.......+. .+.+.+. +.+.++|+||+|+.+... ...+.+. . .+.| ..+
T Consensus 155 ~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v 234 (353)
T 2x2e_A 155 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV 234 (353)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEEC
T ss_pred HHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEE
Confidence 344444555644 4577778888765554443 2555554 679999999999986543 2222110 0 0123 256
Q ss_pred EEeccccccchhhhHHHHHH
Q 021210 180 IFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 180 i~iSa~~g~gi~~L~~~L~~ 199 (316)
+++||+++.|+++|.+.+..
T Consensus 235 ~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 235 VNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp CCCCHHHHHTTCCHHHHHHH
T ss_pred EeCCcccccccccHHHHHHH
Confidence 78999999999998887765
No 383
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.34 E-value=0.00016 Score=64.76 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=22.9
Q ss_pred cceEEeEeccC---------CCCcchhHHhhhcC
Q 021210 216 RAVRAGIVGYP---------NVGKSSLINRLLKR 240 (316)
Q Consensus 216 ~~~~i~ivG~p---------NvGKSTLiN~L~~~ 240 (316)
..+||+++|.+ |||||||+|+|.+.
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 45899999999 99999999999974
No 384
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.34 E-value=0.00011 Score=77.28 Aligned_cols=88 Identities=17% Similarity=0.112 Sum_probs=55.5
Q ss_pred CCcchhhhhhccccCCcceE--EEec----------------cccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCC
Q 021210 72 GSIEAYEEECDWADLDADLY--YWTK----------------SLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP 133 (316)
Q Consensus 72 ~~~g~~~e~e~~~~~d~~~~--~~~~----------------~~~~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~ 133 (316)
+.|-...|.+.++|++.... .|.. ..-.+-++||| .++...+...+..+|.+|+|+|+.++
T Consensus 56 ~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~liDTPG~-~df~~~~~~~l~~aD~ailVvDa~~g 134 (842)
T 1n0u_A 56 FTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGH-VDFSSEVTAALRVTDGALVVVDTIEG 134 (842)
T ss_dssp -----------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEECCCCC-CSSCHHHHHHHHTCSEEEEEEETTTB
T ss_pred eecCchhhhhcceeEeeceeEEEecccccccccccccccCCCceEEEEECcCc-hhhHHHHHHHHHhCCEEEEEEeCCCC
Confidence 34444456677778776654 3431 11126789999 56777788889999999999999988
Q ss_pred CCCCcHHHHHH--hCCCCEEEEEEccCCC
Q 021210 134 LSTTHPLMDQW--LGNRKRILVLNREDMI 160 (316)
Q Consensus 134 ~~~~~~~i~~~--l~~k~~IlVlNK~DLv 160 (316)
.......+... ..+.|+++|+||+|+.
T Consensus 135 ~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 135 VCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp SCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred CCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 76544433222 2368999999999986
No 385
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.31 E-value=0.00023 Score=67.42 Aligned_cols=80 Identities=8% Similarity=0.067 Sum_probs=44.1
Q ss_pred CeEEEEEeC-CCCCCCCcHHHHHHhC-CCCEEEEEEccCCCChHhHHHH----HHHHHhcCceEEEeccccccchhhhHH
Q 021210 122 DVVIEVRDA-RIPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNAW----ATYFAKQGTKVIFSNGQLGMGTMKLSR 195 (316)
Q Consensus 122 DlIl~VvDa-r~~~~~~~~~i~~~l~-~k~~IlVlNK~DLv~~~~~~~~----~~~~~~~g~~vi~iSa~~g~gi~~L~~ 195 (316)
|++++++|. +.++...+..+...+. +.|+|+|+||+|+.+..++..+ .+.+...++.++.+||+.|.+-+.+..
T Consensus 147 ~~~vy~I~~~~~~l~~~d~~~~~~l~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~~e~~~~ 226 (361)
T 2qag_A 147 HCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKE 226 (361)
T ss_dssp CEEEEEECSSSSSCCHHHHHHHHHTCS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC---------CHH
T ss_pred EEEEEEEecCCCCcchhHHHHHHHhccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCcchhHHH
Confidence 568888875 5555544444444444 6799999999999987655432 233334567788999999988433444
Q ss_pred HHHHhh
Q 021210 196 LAKALA 201 (316)
Q Consensus 196 ~L~~l~ 201 (316)
++..+.
T Consensus 227 l~~~i~ 232 (361)
T 2qag_A 227 QTRLLK 232 (361)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 386
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.27 E-value=0.00022 Score=60.74 Aligned_cols=99 Identities=12% Similarity=-0.008 Sum_probs=61.5
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----CCCCEEEEEEccCCCChHh--HHHHHHHHH
Q 021210 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFA 173 (316)
Q Consensus 102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~-~i~~~l-----~~k~~IlVlNK~DLv~~~~--~~~~~~~~~ 173 (316)
++||+ .++.+........+|.+++|+|..+..+..+. .+...+ ...++++|+||+|+.+..+ ..+......
T Consensus 60 Dt~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~ 138 (199)
T 2f9l_A 60 DTAGQ-ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE 138 (199)
T ss_dssp ECSSG-GGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred ECCCc-hhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHH
Confidence 45555 22222233456789999999998765432221 111111 2568999999999964321 122233344
Q ss_pred hcCceEEEeccccccchhhhHHHHHHhh
Q 021210 174 KQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (316)
Q Consensus 174 ~~g~~vi~iSa~~g~gi~~L~~~L~~l~ 201 (316)
+.+..++.+|++++.|++++.+.+.+..
T Consensus 139 ~~~~~~~d~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 139 KNNLSFIETSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5567788899999999999988776543
No 387
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.26 E-value=0.00019 Score=73.98 Aligned_cols=58 Identities=21% Similarity=0.296 Sum_probs=38.9
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCccc-----cc------CC------CCCceeeEEEEEe---C-------CcEEEEeC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----PA------AP------RPGVTRVLKWVRF---G-------KDLEFLDS 269 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~-----~v------s~------~pgtT~~~~~~~~---~-------~~~~liDT 269 (316)
..+|+++|..|+|||||+++|+..... .+ .+ ..|+|.......+ + ..+.|+||
T Consensus 10 ~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDT 89 (704)
T 2rdo_7 10 YRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDT 89 (704)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeC
Confidence 457999999999999999999743110 11 11 3466665432222 2 46899999
Q ss_pred CCccc
Q 021210 270 PGIIP 274 (316)
Q Consensus 270 PGi~~ 274 (316)
||...
T Consensus 90 PG~~d 94 (704)
T 2rdo_7 90 PGHVD 94 (704)
T ss_pred CCccc
Confidence 99865
No 388
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.23 E-value=7.3e-05 Score=75.62 Aligned_cols=59 Identities=25% Similarity=0.361 Sum_probs=33.0
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCcccc--------c------CCCCCceeeEE---EEEe---C--CcEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMCP--------A------APRPGVTRVLK---WVRF---G--KDLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~~--------v------s~~pgtT~~~~---~~~~---~--~~~~liDTPGi~~ 274 (316)
..+|+++|.+|+|||||+|+|+...... + ....|+|.... ..+. + ..+.|+||||...
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 3579999999999999999998632111 0 11246665422 2111 1 2477999999875
Q ss_pred C
Q 021210 275 M 275 (316)
Q Consensus 275 ~ 275 (316)
.
T Consensus 86 F 86 (600)
T 2ywe_A 86 F 86 (600)
T ss_dssp G
T ss_pred H
Confidence 3
No 389
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=97.20 E-value=0.00026 Score=66.42 Aligned_cols=57 Identities=19% Similarity=0.173 Sum_probs=36.2
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCCCCCceeeEEEEEe--CCcEEEEeCCCcccC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--GKDLEFLDSPGIIPM 275 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~~pgtT~~~~~~~~--~~~~~liDTPGi~~~ 275 (316)
||+++|.+|||||||++.+.+..........+.|.......+ .-.+.|+||||--..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQErf 59 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNY 59 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEECSSSCEEEEECCSCSSS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEccEEEEEEEECCCchhc
Confidence 489999999999999998875432211111233433222222 236899999998654
No 390
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.13 E-value=3.1e-05 Score=67.55 Aligned_cols=55 Identities=25% Similarity=0.341 Sum_probs=39.2
Q ss_pred EEeEeccCCCCcchhHHhhhcCcc-cccCCCCCceeeEEEEEe-CCcEEEEeCCCcc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~-~~vs~~pgtT~~~~~~~~-~~~~~liDTPGi~ 273 (316)
.++|+|.+|+|||||+|.|.+... ......++|||....... +.++.++|...|.
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~ 77 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMT 77 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhh
Confidence 489999999999999999997643 244567788887543222 4456666666653
No 391
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.11 E-value=0.00023 Score=70.60 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.0
Q ss_pred cceEEeEeccCCCCcchhHHhhh
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLL 238 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~ 238 (316)
.+..|+++|.+||||||++|.|.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999999999998
No 392
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.05 E-value=0.00066 Score=67.92 Aligned_cols=73 Identities=21% Similarity=0.126 Sum_probs=50.5
Q ss_pred cccccchHHH----------HHHHHHHHHhhcCeEEEEEeCCCC-CCCCcHHHHHHhC--CCCEEEEEEccCCCChHhHH
Q 021210 100 VQWYPGHIAK----------TEKELKDQLKLMDVVIEVRDARIP-LSTTHPLMDQWLG--NRKRILVLNREDMISMADRN 166 (316)
Q Consensus 100 i~~~Pgh~~~----------~~r~l~~~i~~aDlIl~VvDar~~-~~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~~~ 166 (316)
+-++||+... +.+.+...+..+|++|+|+|+... .......+.+.+. +.++++|+||+|+++..++.
T Consensus 158 lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~el~ 237 (550)
T 2qpt_A 158 IIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLM 237 (550)
T ss_dssp EEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCHHHHH
T ss_pred EEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCHHHHH
Confidence 5577887421 345566778999999999999874 3333344545554 46899999999999877655
Q ss_pred HHHHHH
Q 021210 167 AWATYF 172 (316)
Q Consensus 167 ~~~~~~ 172 (316)
+..+.+
T Consensus 238 ~~~~~l 243 (550)
T 2qpt_A 238 RVYGAL 243 (550)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 544433
No 393
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.03 E-value=8.4e-05 Score=66.11 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=26.4
Q ss_pred ceEEeEeccCCCCcchhHHhhh-----cCcccccCCCCC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLL-----KRRMCPAAPRPG 250 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~-----~~~~~~vs~~pg 250 (316)
...++++|++||||||++|.|. +.+...+..-|+
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~ 52 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTG 52 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSS
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4568999999999999999998 666555554443
No 394
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.98 E-value=0.00024 Score=66.90 Aligned_cols=87 Identities=8% Similarity=-0.034 Sum_probs=54.8
Q ss_pred HHHHHHHHhhcCeEEEEEeCCCCC--CCCcHHHHHHhC--CCCEEEEEEccCCCChHh-HHHHHHH-HHhcCceEEEecc
Q 021210 111 EKELKDQLKLMDVVIEVRDARIPL--STTHPLMDQWLG--NRKRILVLNREDMISMAD-RNAWATY-FAKQGTKVIFSNG 184 (316)
Q Consensus 111 ~r~l~~~i~~aDlIl~VvDar~~~--~~~~~~i~~~l~--~k~~IlVlNK~DLv~~~~-~~~~~~~-~~~~g~~vi~iSa 184 (316)
...+...+.++|++|+|+|+.... ......+...+. +++.++|+||+|+++... ..+..+. ....+..++.+++
T Consensus 163 ~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~ 242 (360)
T 3t34_A 163 ENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVN 242 (360)
T ss_dssp HHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECC
T ss_pred HHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEE
Confidence 445567789999999999864322 122233444443 578999999999986543 1111111 1123456788999
Q ss_pred ccccchhhhHHHH
Q 021210 185 QLGMGTMKLSRLA 197 (316)
Q Consensus 185 ~~g~gi~~L~~~L 197 (316)
..+.++++.....
T Consensus 243 ~s~~~i~~~~~~~ 255 (360)
T 3t34_A 243 RSQADINKNVDMI 255 (360)
T ss_dssp CCHHHHHTTCCHH
T ss_pred CChHHhccCCCHH
Confidence 9988887655443
No 395
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.89 E-value=0.0017 Score=56.12 Aligned_cols=78 Identities=13% Similarity=0.040 Sum_probs=48.8
Q ss_pred cCeEEEEEeCCCCCCCCcHHHHHHhCCCCEEEEEEccCCCChH--hHHHHHHHHHhc--CceEEEeccccccchhhhHHH
Q 021210 121 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA--DRNAWATYFAKQ--GTKVIFSNGQLGMGTMKLSRL 196 (316)
Q Consensus 121 aDlIl~VvDar~~~~~~~~~i~~~l~~k~~IlVlNK~DLv~~~--~~~~~~~~~~~~--g~~vi~iSa~~g~gi~~L~~~ 196 (316)
.+.++.|+|+..+....... ... ..++.++|+||+|+.+.. ..++..+.+... +..++++||++|.|+++|.+.
T Consensus 140 ~~~~~~v~~~~~~~~~~~~~-~~~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 217 (226)
T 2hf9_A 140 THKRIVVISTTEGDDTIEKH-PGI-MKTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEF 217 (226)
T ss_dssp CSEEEEEEEGGGCTTTTTTC-HHH-HTTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHH
T ss_pred cCcEEEEEecCcchhhHhhh-hhH-hhcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHH
Confidence 35567788864332211111 111 257889999999986542 233333444433 467899999999999999887
Q ss_pred HHHh
Q 021210 197 AKAL 200 (316)
Q Consensus 197 L~~l 200 (316)
+.+.
T Consensus 218 l~~~ 221 (226)
T 2hf9_A 218 IEKS 221 (226)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 396
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.86 E-value=0.0014 Score=61.07 Aligned_cols=96 Identities=16% Similarity=0.077 Sum_probs=63.8
Q ss_pred HHHHHhCCCCEEEEEEccCCCChHhHHHHHHHHHhcCceEEEeccccccchhhhHHHHHHhh-hhhhhhhcccCCCccce
Q 021210 140 LMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA-SDVNVKRRSKGLLPRAV 218 (316)
Q Consensus 140 ~i~~~l~~k~~IlVlNK~DLv~~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~~L~~l~-~~~~~~r~~~~~~~~~~ 218 (316)
.+.+++......+|++|.|..+++ ..+..++.++.++.++..+...+..|..++.... +....+... ..-...
T Consensus 72 rler~l~~~~P~IIltrg~~~pee----lie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~--v~~~g~ 145 (314)
T 1ko7_A 72 RMRKLCRPETPAIIVTRDLEPPEE----LIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVL--VDVYGV 145 (314)
T ss_dssp HHHHHCCTTCCCEEECTTCCCCHH----HHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEE--EEETTE
T ss_pred HHHHHhcCCCCEEEEeCCCCCCHH----HHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEE--EEECCE
Confidence 456666666678899999988654 3344555678888888888888888887766521 111111000 000123
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
-++|.|.+|+||||+.+.|.++.
T Consensus 146 ~vl~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 146 GVLITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp EEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCHHHHHHHHHhcC
Confidence 48999999999999999998643
No 397
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.82 E-value=0.0001 Score=64.03 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.6
Q ss_pred ceEEeEeccCCCCcchhHHhhhcC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~ 240 (316)
..+|+++|.+|||||||+|+|...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
No 398
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=96.79 E-value=0.0021 Score=56.75 Aligned_cols=131 Identities=8% Similarity=-0.100 Sum_probs=59.2
Q ss_pred CCCCCCCCcchhhhhhccccCCcceE--EEeccccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC-CcHHH-
Q 021210 66 NSNNSNGSIEAYEEECDWADLDADLY--YWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST-THPLM- 141 (316)
Q Consensus 66 ~~~~~~~~~g~~~e~e~~~~~d~~~~--~~~~~~~~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~-~~~~i- 141 (316)
.+|+--+.-..++||+.-..-+...+ .|.-.... .+.-|-..+....-+.+.+++|.+|+|||+.+.... ...++
T Consensus 70 ~fni~tlys~~~~er~~~~~~~~~~~~k~~~~~~~~-~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~ 148 (227)
T 3l82_B 70 KFNILILYSTTRKERDRAREEHTSAVNKMFSRHNEG-DDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFS 148 (227)
T ss_dssp EEEEEECSCC--------------------------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHH
T ss_pred EEEEEEeccCcHHHhhhhhhhhhhhhhhcccccCCC-ccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHH
Confidence 57877777888888887664333322 33322110 111112233222233678999999999999765321 22233
Q ss_pred --HHHh------CCCCEEEEEEcc-CCCChHhHHHHHHHH--Hhc--CceEEEeccccccchhhhHHHH
Q 021210 142 --DQWL------GNRKRILVLNRE-DMISMADRNAWATYF--AKQ--GTKVIFSNGQLGMGTMKLSRLA 197 (316)
Q Consensus 142 --~~~l------~~k~~IlVlNK~-DLv~~~~~~~~~~~~--~~~--g~~vi~iSa~~g~gi~~L~~~L 197 (316)
..++ .+.|+++..||. |+...-...+..+.+ .+. ...+..+||.+|+|+.+=.+.|
T Consensus 149 eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL 217 (227)
T 3l82_B 149 HIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWI 217 (227)
T ss_dssp HHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHH
T ss_pred HHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHH
Confidence 2222 245888899996 664322222233222 111 2457889999999977655554
No 399
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.77 E-value=0.00087 Score=68.54 Aligned_cols=58 Identities=22% Similarity=0.256 Sum_probs=38.0
Q ss_pred ceEEeEeccCCCCcchhHHhhhcCccc-----cc------CC------CCCceeeEEEEEe---CCcEEEEeCCCccc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----PA------AP------RPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~~~~-----~v------s~------~pgtT~~~~~~~~---~~~~~liDTPGi~~ 274 (316)
..+|+++|.+|+|||||+++|++.... .+ .+ ..|+|...+...+ ...+.|+||||...
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 457999999999999999999843211 01 11 1245544333222 34688999999864
No 400
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.74 E-value=0.00032 Score=58.91 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=34.9
Q ss_pred HHHHHhhcCeEEEEEeCC-CCCCCCc--HHHHHHh--------CCCCEEEEEEccCCCChHhHHHHHH
Q 021210 114 LKDQLKLMDVVIEVRDAR-IPLSTTH--PLMDQWL--------GNRKRILVLNREDMISMADRNAWAT 170 (316)
Q Consensus 114 l~~~i~~aDlIl~VvDar-~~~~~~~--~~i~~~l--------~~k~~IlVlNK~DLv~~~~~~~~~~ 170 (316)
+...+..+|++|+|+|+. +..+... ..+..++ .+.|+++|+||+|+.+.....+..+
T Consensus 112 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 179 (193)
T 2ged_A 112 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKD 179 (193)
T ss_dssp HHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHH
T ss_pred HHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHH
Confidence 334456699999999997 3211111 1122222 2689999999999987654444433
No 401
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.73 E-value=0.0018 Score=60.70 Aligned_cols=82 Identities=15% Similarity=0.030 Sum_probs=51.0
Q ss_pred HHhhcCeEEEEEeCCCCCCC--CcHHHHHHhCCCCEEEEEEccCCCChH-hHHHHHHHHHh----c-------CceEEEe
Q 021210 117 QLKLMDVVIEVRDARIPLST--THPLMDQWLGNRKRILVLNREDMISMA-DRNAWATYFAK----Q-------GTKVIFS 182 (316)
Q Consensus 117 ~i~~aDlIl~VvDar~~~~~--~~~~i~~~l~~k~~IlVlNK~DLv~~~-~~~~~~~~~~~----~-------g~~vi~i 182 (316)
..+.+|++++|+|+..+... ....+. ..+.++++||+|+.+.. ......+.+.. . ..+++++
T Consensus 165 v~~~~d~vl~v~d~~~~~~~~~i~~~i~----~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~ 240 (337)
T 2qm8_A 165 VADLTDFFLVLMLPGAGDELQGIKKGIF----ELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTI 240 (337)
T ss_dssp HHTTSSEEEEEECSCC------CCTTHH----HHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEE
T ss_pred HHhhCCEEEEEEcCCCcccHHHHHHHHh----ccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence 45799999999998643210 011111 23568888999986532 22222222221 1 3468899
Q ss_pred ccccccchhhhHHHHHHhhh
Q 021210 183 NGQLGMGTMKLSRLAKALAS 202 (316)
Q Consensus 183 Sa~~g~gi~~L~~~L~~l~~ 202 (316)
||+++.|+++|.+.+.++..
T Consensus 241 Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 241 SGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp BTTTTBSHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999998887653
No 402
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.70 E-value=0.00043 Score=65.54 Aligned_cols=98 Identities=14% Similarity=0.077 Sum_probs=59.0
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCC---------CCcH---HHHHHh-----CCCCEEEEEEccCCCChH-
Q 021210 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS---------TTHP---LMDQWL-----GNRKRILVLNREDMISMA- 163 (316)
Q Consensus 102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~---------~~~~---~i~~~l-----~~k~~IlVlNK~DLv~~~- 163 (316)
+.+|+ .++.+......+.++.||+|+|..+... ..+. .+...+ .+.|+++++||+||....
T Consensus 199 Dt~GQ-e~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki 277 (353)
T 1cip_A 199 DVGGQ-RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKI 277 (353)
T ss_dssp EECCS-GGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHH
T ss_pred eCCCc-hhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhc
Confidence 34555 3344444456789999999999876321 1111 112222 357899999999984211
Q ss_pred ----------------hHHHHHHHHH-----------hcCceEEEeccccccchhhhHHHHHHh
Q 021210 164 ----------------DRNAWATYFA-----------KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 164 ----------------~~~~~~~~~~-----------~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
..++..+++. ..+..++.+||+++.|+.++.+.+...
T Consensus 278 ~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~ 341 (353)
T 1cip_A 278 KKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDV 341 (353)
T ss_dssp TTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHH
Confidence 1122222332 124567889999999999887765543
No 403
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=96.67 E-value=0.0023 Score=59.95 Aligned_cols=79 Identities=6% Similarity=-0.055 Sum_probs=48.6
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCcHHHHHH-------hCCCCEEEEEEccCCCChHhH----HH----HHHHHHh-----
Q 021210 115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQW-------LGNRKRILVLNREDMISMADR----NA----WATYFAK----- 174 (316)
Q Consensus 115 ~~~i~~aDlIl~VvDar~~~~~~~~~i~~~-------l~~k~~IlVlNK~DLv~~~~~----~~----~~~~~~~----- 174 (316)
....+.++.+|+|+|..+.....-..+.++ ..+.|++++.||+||.+.++. ++ ..+.+.+
T Consensus 67 ~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~ 146 (331)
T 3r7w_B 67 ERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDG 146 (331)
T ss_dssp HHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSC
T ss_pred hhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccc
Confidence 456789999999999987611111122221 236789999999999875431 11 1122333
Q ss_pred cCceEEEeccccccchhhhH
Q 021210 175 QGTKVIFSNGQLGMGTMKLS 194 (316)
Q Consensus 175 ~g~~vi~iSa~~g~gi~~L~ 194 (316)
.+..++.+||++ .++.+..
T Consensus 147 ~~i~f~eTSAkd-~nV~eAF 165 (331)
T 3r7w_B 147 VQVSFYLTSIFD-HSIYEAF 165 (331)
T ss_dssp CCEEEECCCSSS-SHHHHHH
T ss_pred cCceEEEeccCC-CcHHHHH
Confidence 245678899986 4665543
No 404
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.59 E-value=0.0028 Score=61.81 Aligned_cols=60 Identities=20% Similarity=0.283 Sum_probs=38.2
Q ss_pred EEeEeccCCCCcchhHHhhhc-----------------CcccccCCC-CCceeeEE-EE---Ee----CC--cEEEEeCC
Q 021210 219 RAGIVGYPNVGKSSLINRLLK-----------------RRMCPAAPR-PGVTRVLK-WV---RF----GK--DLEFLDSP 270 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~-----------------~~~~~vs~~-pgtT~~~~-~~---~~----~~--~~~liDTP 270 (316)
-|+|+|.+++|||+|+|.|++ .....+++. -.+|+.+- |. .+ +. .+.|+||.
T Consensus 69 vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDTE 148 (457)
T 4ido_A 69 AVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQ 148 (457)
T ss_dssp EEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEEC
T ss_pred EEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEecc
Confidence 478999999999999997752 122333322 22566642 21 11 12 38899999
Q ss_pred CcccCCCC
Q 021210 271 GIIPMRIS 278 (316)
Q Consensus 271 Gi~~~~~~ 278 (316)
|+.+....
T Consensus 149 G~~d~~~~ 156 (457)
T 4ido_A 149 GTFDSQST 156 (457)
T ss_dssp CBTCTTCC
T ss_pred CCCCcccC
Confidence 99866543
No 405
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.56 E-value=0.00077 Score=63.99 Aligned_cols=99 Identities=11% Similarity=0.052 Sum_probs=56.2
Q ss_pred ccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC---------CCCcH---HHHHHh-----CCCCEEEEEEccCCCCh-
Q 021210 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL---------STTHP---LMDQWL-----GNRKRILVLNREDMISM- 162 (316)
Q Consensus 101 ~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~---------~~~~~---~i~~~l-----~~k~~IlVlNK~DLv~~- 162 (316)
-+.+|+ ..+.+......+.++.+|+|+|..+.. .+.+. .+...+ .+.|+|+++||+||...
T Consensus 206 ~Dt~Gq-~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~k 284 (362)
T 1zcb_A 206 VDVGGQ-RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEK 284 (362)
T ss_dssp EEECC--------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHH
T ss_pred Eeccch-hhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhh
Confidence 345666 444444445678999999999987631 01111 112222 35689999999998521
Q ss_pred -----------------HhHHHHHHHH----H-------hcCceEEEeccccccchhhhHHHHHHh
Q 021210 163 -----------------ADRNAWATYF----A-------KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (316)
Q Consensus 163 -----------------~~~~~~~~~~----~-------~~g~~vi~iSa~~g~gi~~L~~~L~~l 200 (316)
...++..+++ . ..+..++++||+++.|++.+.+.+...
T Consensus 285 i~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~ 350 (362)
T 1zcb_A 285 VQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDT 350 (362)
T ss_dssp TTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHH
Confidence 1122222222 1 123567889999999999887766543
No 406
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.49 E-value=0.00071 Score=57.16 Aligned_cols=37 Identities=27% Similarity=0.323 Sum_probs=27.2
Q ss_pred EEeEeccCCCCcchhHHhhhcCccc-ccCCCCCceeeE
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVL 255 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~-~vs~~pgtT~~~ 255 (316)
.++++|.+|+|||||+|.|.+.... ....+..+||..
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~ 44 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPP 44 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCC
Confidence 4899999999999999999875321 223455666654
No 407
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.43 E-value=0.0009 Score=65.02 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.6
Q ss_pred ceEEeEeccCCCCcchhHHhhhc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLK 239 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~ 239 (316)
+..|+++|.+||||||+++.|..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999985
No 408
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.35 E-value=0.0044 Score=57.02 Aligned_cols=77 Identities=6% Similarity=0.019 Sum_probs=40.9
Q ss_pred cCeEEEEEeCC-CCCCCCcHHHHHHhC-CCCEEEEEEccCCCChHhHH----HHHHHHHhcCceEEEeccccccchhhhH
Q 021210 121 MDVVIEVRDAR-IPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRN----AWATYFAKQGTKVIFSNGQLGMGTMKLS 194 (316)
Q Consensus 121 aDlIl~VvDar-~~~~~~~~~i~~~l~-~k~~IlVlNK~DLv~~~~~~----~~~~~~~~~g~~vi~iSa~~g~gi~~L~ 194 (316)
+++++++++.. .++...+..+.+.+. ..++++|+||+|+.+..+.. +..+++...+..++.+||++| |++++.
T Consensus 127 a~~ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f 205 (301)
T 2qnr_A 127 VHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDF 205 (301)
T ss_dssp CCEEEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------C
T ss_pred hhheeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHH
Confidence 44566666543 223333333333333 45899999999998765432 334445566788889999999 988876
Q ss_pred HHHH
Q 021210 195 RLAK 198 (316)
Q Consensus 195 ~~L~ 198 (316)
..+.
T Consensus 206 ~~l~ 209 (301)
T 2qnr_A 206 KEQT 209 (301)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 409
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.15 E-value=0.0081 Score=50.67 Aligned_cols=84 Identities=13% Similarity=0.014 Sum_probs=54.1
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCcH-HHHH-H---h-CCCCEEEEEEccCCCChHh--HHHHHHHHHhcCceEEEeccccc
Q 021210 116 DQLKLMDVVIEVRDARIPLSTTHP-LMDQ-W---L-GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLG 187 (316)
Q Consensus 116 ~~i~~aDlIl~VvDar~~~~~~~~-~i~~-~---l-~~k~~IlVlNK~DLv~~~~--~~~~~~~~~~~g~~vi~iSa~~g 187 (316)
.....+|.+++|+|..+..+..+. .+.. + . ...++++++||+||.+..+ .....+...+.+..++.+|++++
T Consensus 97 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~ 176 (191)
T 1oix_A 97 AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDS 176 (191)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred HHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 446778999999998754322111 1111 1 1 2568999999999864321 12222334445667788999999
Q ss_pred cchhhhHHHHHH
Q 021210 188 MGTMKLSRLAKA 199 (316)
Q Consensus 188 ~gi~~L~~~L~~ 199 (316)
.|++++.+.+.+
T Consensus 177 ~~v~~l~~~l~~ 188 (191)
T 1oix_A 177 TNVEAAFQTILT 188 (191)
T ss_dssp TTHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999998877654
No 410
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.14 E-value=0.0054 Score=59.27 Aligned_cols=76 Identities=9% Similarity=0.001 Sum_probs=41.3
Q ss_pred cCeEEEEEeCC-CCCCCCcHHHHHHhC-CCCEEEEEEccCCCChHhHHH----HHHHHHhcCceEEEeccccccchhhhH
Q 021210 121 MDVVIEVRDAR-IPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNA----WATYFAKQGTKVIFSNGQLGMGTMKLS 194 (316)
Q Consensus 121 aDlIl~VvDar-~~~~~~~~~i~~~l~-~k~~IlVlNK~DLv~~~~~~~----~~~~~~~~g~~vi~iSa~~g~gi~~L~ 194 (316)
++++|++++.. .++...+..+.+.+. +.++|+|+||+|+++..++.. ..+.+...++.++.+|++.+.++.++.
T Consensus 139 ~~vlL~ldePt~~~L~~~d~~~lk~L~~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~ 218 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLV 218 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHHHHHHHHTTTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------
T ss_pred eeEEEEEecCcccCCCHHHHHHHHHHhccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHH
Confidence 45677776654 455544444444443 678999999999998765443 334455567888889999988887654
Q ss_pred HH
Q 021210 195 RL 196 (316)
Q Consensus 195 ~~ 196 (316)
..
T Consensus 219 ~~ 220 (418)
T 2qag_C 219 KK 220 (418)
T ss_dssp --
T ss_pred HH
Confidence 43
No 411
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.02 E-value=0.00083 Score=57.86 Aligned_cols=36 Identities=25% Similarity=0.225 Sum_probs=27.3
Q ss_pred EeEeccCCCCcchhHHhhhcCccc-ccCCCCCceeeE
Q 021210 220 AGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVL 255 (316)
Q Consensus 220 i~ivG~pNvGKSTLiN~L~~~~~~-~vs~~pgtT~~~ 255 (316)
|+|+|.+||||+||++.|+..... ..-.++.|||..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 689999999999999999865422 223467788764
No 412
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.00 E-value=0.0057 Score=56.45 Aligned_cols=132 Identities=8% Similarity=-0.087 Sum_probs=62.3
Q ss_pred CCCCCCCCcchhhhhhccccCCcceE--EEeccccccccccchHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC-cHHHH
Q 021210 66 NSNNSNGSIEAYEEECDWADLDADLY--YWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT-HPLMD 142 (316)
Q Consensus 66 ~~~~~~~~~g~~~e~e~~~~~d~~~~--~~~~~~~~i~~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~~~~-~~~i~ 142 (316)
.+|+--+.-..++||+.-...+...+ .|.-.... .+.-|-..+....-+.+.+++|.+|+|||+.+..... ..++.
T Consensus 155 ~fni~tLYs~tr~ER~r~~~e~~~~~~k~f~~~~~~-~~~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~ 233 (312)
T 3l2o_B 155 KFNILILYSTTRKERDRAREEHTSAVNKMFSRHNEG-DDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFS 233 (312)
T ss_dssp EEEEEECSCCCC-------------------------------CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHH
T ss_pred eEEEEEeccccHHHHhhhhhhhhhhhhhhccccCCC-CcCCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHH
Confidence 57766677777888887665444333 44322210 0000111222222336789999999999997654321 12222
Q ss_pred ---HH------hCCCCEEEEEEc-cCCCChHhHHHHHHHHH--hc--CceEEEeccccccchhhhHHHHH
Q 021210 143 ---QW------LGNRKRILVLNR-EDMISMADRNAWATYFA--KQ--GTKVIFSNGQLGMGTMKLSRLAK 198 (316)
Q Consensus 143 ---~~------l~~k~~IlVlNK-~DLv~~~~~~~~~~~~~--~~--g~~vi~iSa~~g~gi~~L~~~L~ 198 (316)
.+ +.+.|+++..|| -|+...-...+..+.+. +. ...+..+||.+|+|+.+=.+.|.
T Consensus 234 eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~ 303 (312)
T 3l2o_B 234 HIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWIL 303 (312)
T ss_dssp HHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHH
T ss_pred HHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHH
Confidence 11 346789999997 47753322223333221 11 24578999999999777555544
No 413
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=95.92 E-value=0.0074 Score=60.29 Aligned_cols=58 Identities=21% Similarity=0.370 Sum_probs=36.2
Q ss_pred EEeEeccCCCCcchhHHhhhcCccc---------------ccC------CCCCceeeE---EEEEeCCcEEEEeCCCccc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMC---------------PAA------PRPGVTRVL---KWVRFGKDLEFLDSPGIIP 274 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~---------------~vs------~~pgtT~~~---~~~~~~~~~~liDTPGi~~ 274 (316)
+|+|+|...+|||||.-+|+-.... .+. ..-|+|... ...+.+..+.||||||-.+
T Consensus 33 NiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHvD 112 (548)
T 3vqt_A 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQD 112 (548)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGGG
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcHH
Confidence 6999999999999999999721110 111 123555442 3334466789999999987
Q ss_pred CC
Q 021210 275 MR 276 (316)
Q Consensus 275 ~~ 276 (316)
+.
T Consensus 113 F~ 114 (548)
T 3vqt_A 113 FS 114 (548)
T ss_dssp CS
T ss_pred HH
Confidence 63
No 414
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.75 E-value=0.0095 Score=60.20 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.9
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.++++|.+|+|||||+|+|.|..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 38999999999999999999853
No 415
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.67 E-value=0.024 Score=50.75 Aligned_cols=64 Identities=22% Similarity=0.269 Sum_probs=38.9
Q ss_pred cccccchH------HHHHHHHHHHH--hhcCeEEEEEeCCCC-CCCCcHHHHHHh----CC---CCEEEEEEccCCCChH
Q 021210 100 VQWYPGHI------AKTEKELKDQL--KLMDVVIEVRDARIP-LSTTHPLMDQWL----GN---RKRILVLNREDMISMA 163 (316)
Q Consensus 100 i~~~Pgh~------~~~~r~l~~~i--~~aDlIl~VvDar~~-~~~~~~~i~~~l----~~---k~~IlVlNK~DLv~~~ 163 (316)
+-++||+. .++.+.+...+ ..+|++|+|+|.... +...+..+...+ +. +|+++|+||+|+.+..
T Consensus 91 iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 91 IIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp EEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred EEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 56678872 23344444332 379999999887542 222222333333 22 5899999999998654
No 416
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=95.54 E-value=0.0047 Score=57.79 Aligned_cols=96 Identities=13% Similarity=0.111 Sum_probs=58.0
Q ss_pred ccchHHHHHHHHHHHHhhcCeEEEEEeCCC------CCCCCcH------HHHHHh-----CCCCEEEEEEccCCCChH--
Q 021210 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARI------PLSTTHP------LMDQWL-----GNRKRILVLNREDMISMA-- 163 (316)
Q Consensus 103 ~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~------~~~~~~~------~i~~~l-----~~k~~IlVlNK~DLv~~~-- 163 (316)
..|. .++.+......+.++.+|+|+|... ..+..+. .+...+ .+.|+++++||+||....
T Consensus 174 tgGQ-e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~ 252 (327)
T 3ohm_A 174 VGGQ-RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIM 252 (327)
T ss_dssp ECCS-HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTT
T ss_pred cCCc-hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhc
Confidence 3444 5555555567899999999997651 0112221 122222 357899999999985321
Q ss_pred ----------------hHHHHHHHH----H------hcCceEEEeccccccchhhhHHHHHH
Q 021210 164 ----------------DRNAWATYF----A------KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 164 ----------------~~~~~~~~~----~------~~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
..++-.+++ . +.++.+.++||+++.|++.+...+.+
T Consensus 253 ~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~ 314 (327)
T 3ohm_A 253 YSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD 314 (327)
T ss_dssp TSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHH
Confidence 122222332 1 12345778999999999887766554
No 417
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.44 E-value=0.0049 Score=52.30 Aligned_cols=23 Identities=35% Similarity=0.702 Sum_probs=20.7
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
+++++|.+|+|||||++.|.+.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 418
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.40 E-value=0.0033 Score=53.88 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=20.7
Q ss_pred eEEeEeccCCCCcchhHHhhhcCc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
..|+++|.+|+||||+.+.|....
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 348999999999999999998643
No 419
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.40 E-value=0.028 Score=54.66 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.7
Q ss_pred cceEEeEeccCCCCcchhHHhhh
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLL 238 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~ 238 (316)
.+..|+++|.+|+||||+++.|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 35679999999999999999997
No 420
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.37 E-value=0.0059 Score=52.67 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.8
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
-++++|.+|+|||||++.|.+..
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 48999999999999999998764
No 421
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.37 E-value=0.011 Score=50.89 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.0
Q ss_pred ceEEeEeccCCCCcchhHHhhhcC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~ 240 (316)
+..++|+|.+|+|||||++.|.+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999998753
No 422
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=95.34 E-value=0.0038 Score=59.00 Aligned_cols=96 Identities=14% Similarity=0.061 Sum_probs=54.6
Q ss_pred ccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC------CCCc--HH----HHHHh-----CCCCEEEEEEccCCCChH--
Q 021210 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPL------STTH--PL----MDQWL-----GNRKRILVLNREDMISMA-- 163 (316)
Q Consensus 103 ~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~------~~~~--~~----i~~~l-----~~k~~IlVlNK~DLv~~~-- 163 (316)
..|. .++.+......+.++.+|+|+|..... ...+ .. +.... .+.|+++|.||+||....
T Consensus 190 taGQ-e~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~ 268 (354)
T 2xtz_A 190 VGGQ-RNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVL 268 (354)
T ss_dssp ECCS-TTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTT
T ss_pred CCCc-hhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhcc
Confidence 3444 334444445678899999999986110 1111 11 11222 356899999999984211
Q ss_pred ---------------------hHHHHHHH----HHh------------cCceEEEeccccccchhhhHHHHHH
Q 021210 164 ---------------------DRNAWATY----FAK------------QGTKVIFSNGQLGMGTMKLSRLAKA 199 (316)
Q Consensus 164 ---------------------~~~~~~~~----~~~------------~g~~vi~iSa~~g~gi~~L~~~L~~ 199 (316)
..++-.++ |.+ ....++.+||+++.|++++.+.+.+
T Consensus 269 ~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~ 341 (354)
T 2xtz_A 269 DVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDE 341 (354)
T ss_dssp TSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHH
Confidence 01121222 211 1234578999999999888766544
No 423
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.34 E-value=0.0051 Score=52.78 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=20.0
Q ss_pred EEeEeccCCCCcchhHHhhhcC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKR 240 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~ 240 (316)
.++|+|.+|+|||||+|.|.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999863
No 424
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=95.16 E-value=0.0042 Score=63.16 Aligned_cols=57 Identities=19% Similarity=0.344 Sum_probs=37.7
Q ss_pred EEeEeccCCCCcchhHHhhhcCcc-----ccc------CCC------CCceeeEE---EEEeCCcEEEEeCCCcccC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRM-----CPA------APR------PGVTRVLK---WVRFGKDLEFLDSPGIIPM 275 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~-----~~v------s~~------pgtT~~~~---~~~~~~~~~liDTPGi~~~ 275 (316)
+|+|+|...+|||||.-+|+.... ..+ .+. -|+|.... ..+.+..+.||||||-.++
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence 589999999999999999873211 111 111 15555432 2233567899999998765
No 425
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=95.12 E-value=0.015 Score=54.57 Aligned_cols=59 Identities=17% Similarity=0.157 Sum_probs=38.0
Q ss_pred cccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC------CCCcH------HHHHH-----hCCCCEEEEEEccCCCC
Q 021210 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL------STTHP------LMDQW-----LGNRKRILVLNREDMIS 161 (316)
Q Consensus 102 ~~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~------~~~~~------~i~~~-----l~~k~~IlVlNK~DLv~ 161 (316)
+..|+ .++.+......+.++.+|+|+|..... ...+. .+... +.+.|+++++||+||..
T Consensus 167 DtaGQ-e~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 167 DVGGQ-RSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp ECCSC-HHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHH
T ss_pred cCCCc-ccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhh
Confidence 34555 666666667789999999999986211 11111 11122 23578999999999853
No 426
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.07 E-value=0.022 Score=54.00 Aligned_cols=49 Identities=18% Similarity=0.195 Sum_probs=34.0
Q ss_pred CCCEEEEEEccC--CCC---hHhHHHHHHHHHhcCceEEEeccccccchhhhHH
Q 021210 147 NRKRILVLNRED--MIS---MADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSR 195 (316)
Q Consensus 147 ~k~~IlVlNK~D--Lv~---~~~~~~~~~~~~~~g~~vi~iSa~~g~gi~~L~~ 195 (316)
.+|++++.||+| +.+ ....+...++....|.+++++||+.+.++.+|.+
T Consensus 201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~ 254 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSG 254 (368)
T ss_dssp GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCH
T ss_pred cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhch
Confidence 489999999997 433 2223444455555678899999998877766543
No 427
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=95.02 E-value=0.0094 Score=57.31 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=35.2
Q ss_pred ccchHHHHHHHHHHHHhhcCeEEEEEeCCCCC------CCCcH--H----HHHHh-----CCCCEEEEEEccCCC
Q 021210 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPL------STTHP--L----MDQWL-----GNRKRILVLNREDMI 160 (316)
Q Consensus 103 ~Pgh~~~~~r~l~~~i~~aDlIl~VvDar~~~------~~~~~--~----i~~~l-----~~k~~IlVlNK~DLv 160 (316)
..|. .++.+......+.++.+|+|+|..+.. ...+. . +..+. .+.|+++|+||+||.
T Consensus 224 taGQ-e~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 224 VGGQ-RDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 297 (402)
T ss_dssp ECCS-GGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHH
T ss_pred cchh-hhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhh
Confidence 3444 444444456678999999999987610 01111 1 12222 246899999999984
No 428
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.99 E-value=0.011 Score=49.59 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.6
Q ss_pred eEEeEeccCCCCcchhHHhhhcC
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKR 240 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~ 240 (316)
-.++++|.+|+|||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999999865
No 429
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.95 E-value=0.0074 Score=52.98 Aligned_cols=23 Identities=39% Similarity=0.382 Sum_probs=20.9
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
-++++|.+|+|||||++.|.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 48999999999999999999754
No 430
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.92 E-value=0.0079 Score=51.67 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.4
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.++++|.+|+|||||+|.|.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998743
No 431
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.81 E-value=0.0088 Score=50.64 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=20.0
Q ss_pred EEeEeccCCCCcchhHHhhhcC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKR 240 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~ 240 (316)
.++++|.+|+|||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4899999999999999999864
No 432
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.73 E-value=0.0095 Score=51.88 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=20.4
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.++|+|.+|+|||||++.|.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 38999999999999999998743
No 433
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.67 E-value=0.0099 Score=50.14 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=19.4
Q ss_pred EeEeccCCCCcchhHHhhhcC
Q 021210 220 AGIVGYPNVGKSSLINRLLKR 240 (316)
Q Consensus 220 i~ivG~pNvGKSTLiN~L~~~ 240 (316)
++++|.+|+|||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999864
No 434
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.52 E-value=0.06 Score=47.91 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=39.2
Q ss_pred cccccchH------HHHHHHHHHHH--hhcCeEEEEEeCCCCC-CCCcHHHHHHhC-------CCCEEEEEEccCCCCh
Q 021210 100 VQWYPGHI------AKTEKELKDQL--KLMDVVIEVRDARIPL-STTHPLMDQWLG-------NRKRILVLNREDMISM 162 (316)
Q Consensus 100 i~~~Pgh~------~~~~r~l~~~i--~~aDlIl~VvDar~~~-~~~~~~i~~~l~-------~k~~IlVlNK~DLv~~ 162 (316)
+-++||+. ..+.+.++..+ ..+|++|+|+|....- ...+..+.+.+. .+|+++|+||+|+.+.
T Consensus 88 liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 88 IIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp EEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred EEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 66778872 34555555444 3789999998875432 222323333332 2489999999999743
No 435
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.36 E-value=0.014 Score=51.61 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=20.7
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.++++|.+|+|||||++.|.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48999999999999999999754
No 436
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.33 E-value=0.014 Score=51.16 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.6
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.++++|.+|+|||||++.|.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999754
No 437
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.30 E-value=0.017 Score=49.35 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.0
Q ss_pred ceEEeEeccCCCCcchhHHhhhcC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~ 240 (316)
+..++++|.+|+|||||++.|.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999864
No 438
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.29 E-value=0.034 Score=54.97 Aligned_cols=76 Identities=17% Similarity=0.111 Sum_probs=47.8
Q ss_pred hcCeEEEEEeCCCCCCCCcHHHHHHhC-CCCE-EEEEEccCCCChHh-HHHHHHHHHhcCce------------------
Q 021210 120 LMDVVIEVRDARIPLSTTHPLMDQWLG-NRKR-ILVLNREDMISMAD-RNAWATYFAKQGTK------------------ 178 (316)
Q Consensus 120 ~aDlIl~VvDar~~~~~~~~~i~~~l~-~k~~-IlVlNK~DLv~~~~-~~~~~~~~~~~g~~------------------ 178 (316)
.+|.+++|+|+..+.. ...+...+. ..++ ++|+||+|...... ...+.+ ..|.+
T Consensus 213 ~pd~vllVvDa~~g~~--~~~~a~~~~~~~~i~gvVlNK~D~~~~~g~~l~~~~---~~g~PI~fig~ge~~~dl~~f~~ 287 (504)
T 2j37_W 213 QPDNIVYVMDASIGQA--CEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVA---ATKSPIIFIGTGEHIDDFEPFKT 287 (504)
T ss_dssp CCSEEEEEEETTCCTT--HHHHHHHHHHHHCCCCEEEECTTSCCCCTHHHHHHH---HHCCCEEEEECSSSTTCEECCTH
T ss_pred cCceEEEEEecccccc--HHHHHHHHHhhcCceEEEEeCCccccchHHHHHHHH---HhCCCeEEeccccchhhhhccCc
Confidence 7899999999987643 223333332 2464 89999999875432 112222 22222
Q ss_pred EEEeccccccc-hhhhHHHHHHh
Q 021210 179 VIFSNGQLGMG-TMKLSRLAKAL 200 (316)
Q Consensus 179 vi~iSa~~g~g-i~~L~~~L~~l 200 (316)
..++|+..|.| +.+|.+.+.+.
T Consensus 288 ~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 288 QPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp HHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ceeeehhcCCCcHHHHHHHHHHH
Confidence 23568888988 88888776654
No 439
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.27 E-value=0.015 Score=48.45 Aligned_cols=20 Identities=20% Similarity=0.390 Sum_probs=17.6
Q ss_pred EEeEeccCCCCcchhHHhhh
Q 021210 219 RAGIVGYPNVGKSSLINRLL 238 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~ 238 (316)
-++++|.+|+|||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 48999999999999999644
No 440
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=94.27 E-value=0.034 Score=57.14 Aligned_cols=57 Identities=21% Similarity=0.310 Sum_probs=33.2
Q ss_pred EEeEeccCCCCcchhHHhhhcCccc-----cc------------CCCCCceeeE---EEEEeC-------CcEEEEeCCC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMC-----PA------------APRPGVTRVL---KWVRFG-------KDLEFLDSPG 271 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~-----~v------------s~~pgtT~~~---~~~~~~-------~~~~liDTPG 271 (316)
+|+|+|....|||||.-+|+..... .+ ...-|+|... ...+.+ ..+.||||||
T Consensus 15 Ni~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPG 94 (709)
T 4fn5_A 15 NIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPG 94 (709)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCCS
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCC
Confidence 6999999999999999998732110 11 1123555543 222221 2478999999
Q ss_pred cccC
Q 021210 272 IIPM 275 (316)
Q Consensus 272 i~~~ 275 (316)
-.++
T Consensus 95 HvDF 98 (709)
T 4fn5_A 95 HVDF 98 (709)
T ss_dssp CTTC
T ss_pred Cccc
Confidence 9865
No 441
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.20 E-value=0.018 Score=48.71 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.9
Q ss_pred eEEeEeccCCCCcchhHHhhhcCc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
..++++|.+|+||||+++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 358999999999999999998653
No 442
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.19 E-value=0.014 Score=50.79 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=15.0
Q ss_pred EEeEeccCCCCcchhHHhhh-cC
Q 021210 219 RAGIVGYPNVGKSSLINRLL-KR 240 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~-~~ 240 (316)
.++++|.+|+|||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 48999999999999999999 64
No 443
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.14 E-value=0.016 Score=49.15 Aligned_cols=22 Identities=18% Similarity=0.490 Sum_probs=19.8
Q ss_pred EEeEeccCCCCcchhHHhhhcC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKR 240 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~ 240 (316)
.++|+|.+|+|||||++.|++.
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 4899999999999999999864
No 444
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.07 E-value=0.019 Score=50.82 Aligned_cols=23 Identities=39% Similarity=0.522 Sum_probs=20.8
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.++++|.+|+|||||++.|.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999754
No 445
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.00 E-value=0.017 Score=48.41 Aligned_cols=21 Identities=38% Similarity=0.346 Sum_probs=19.2
Q ss_pred EEeEeccCCCCcchhHHhhhc
Q 021210 219 RAGIVGYPNVGKSSLINRLLK 239 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~ 239 (316)
.++++|.+|+|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 378999999999999999975
No 446
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.99 E-value=0.02 Score=50.79 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.9
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.++++|.+|+|||||++.|.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999754
No 447
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.98 E-value=0.018 Score=53.30 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=20.1
Q ss_pred EEeEeccCCCCcchhHHhhhcC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKR 240 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~ 240 (316)
.++|+|.+|+|||||++.|.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 5899999999999999999863
No 448
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.94 E-value=0.019 Score=51.40 Aligned_cols=23 Identities=35% Similarity=0.314 Sum_probs=20.7
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.++++|.+|+|||||++.|.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999754
No 449
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.94 E-value=0.018 Score=47.35 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.8
Q ss_pred EEeEeccCCCCcchhHHhhhcC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKR 240 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~ 240 (316)
.|+++|.+|+||||+.+.|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999763
No 450
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.92 E-value=0.02 Score=51.61 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.7
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.++++|.+|+|||||++.|.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999754
No 451
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.92 E-value=0.02 Score=50.98 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.7
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.++++|.+|+|||||++.|.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999999753
No 452
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.92 E-value=0.024 Score=49.34 Aligned_cols=28 Identities=14% Similarity=-0.028 Sum_probs=22.8
Q ss_pred EEeEeccCCCCcchhHHhhhcCcccccCC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAP 247 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~~~~vs~ 247 (316)
.++++|.+|+|||||++.|.+- ....+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl-~p~~G~ 51 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ-ALQSKQ 51 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH-HHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC-CCcCCe
Confidence 3899999999999999999986 433333
No 453
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.92 E-value=0.021 Score=50.89 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.8
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.++++|.+|+|||||++.|.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999753
No 454
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.81 E-value=0.021 Score=51.58 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.7
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.++++|.+|+|||||++.|.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48999999999999999999754
No 455
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.80 E-value=0.023 Score=49.99 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.8
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.++++|..|+|||||++.|.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999754
No 456
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.79 E-value=0.022 Score=49.85 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.6
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.++++|..|+|||||++.|.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999999754
No 457
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.76 E-value=0.022 Score=51.83 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.7
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.++++|.+|+|||||++.|.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999999754
No 458
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.73 E-value=0.024 Score=48.28 Aligned_cols=21 Identities=14% Similarity=0.374 Sum_probs=19.3
Q ss_pred EEeEeccCCCCcchhHHhhhc
Q 021210 219 RAGIVGYPNVGKSSLINRLLK 239 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~ 239 (316)
.++++|.+|+||||+.+.|.+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 459
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.70 E-value=0.028 Score=46.21 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.9
Q ss_pred eEEeEeccCCCCcchhHHhhhc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLK 239 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~ 239 (316)
..|+++|.||+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999986
No 460
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.67 E-value=0.023 Score=50.34 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=20.7
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.++++|.+|+|||||++.|.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999753
No 461
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.67 E-value=0.025 Score=50.84 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.8
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.++++|.+|+|||||++.|.+-.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 48999999999999999999753
No 462
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.65 E-value=0.023 Score=51.24 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.7
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.++++|.+|+|||||++.|.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 48999999999999999999753
No 463
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.65 E-value=0.023 Score=50.63 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=20.3
Q ss_pred EEeEeccCCCCcchhHHhhhcC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKR 240 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~ 240 (316)
.++++|.+|+|||||++.|.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
No 464
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.62 E-value=0.027 Score=49.58 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=19.7
Q ss_pred eEEeEeccCCCCcchhHHhhh
Q 021210 218 VRAGIVGYPNVGKSSLINRLL 238 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~ 238 (316)
..++++|.+|+|||||++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999998
No 465
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.57 E-value=0.027 Score=50.40 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.9
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.++++|.+|+|||||++.|.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999764
No 466
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.57 E-value=0.027 Score=51.00 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.8
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.++++|.+|+|||||++.|.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999753
No 467
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.56 E-value=0.022 Score=48.80 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.8
Q ss_pred EEeEeccCCCCcchhHHhhhcC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKR 240 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~ 240 (316)
.++++|.+|+|||||++.|.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 3799999999999999999864
No 468
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.54 E-value=0.025 Score=50.80 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.8
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.++++|..|+|||||++.|.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999754
No 469
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.52 E-value=0.025 Score=51.02 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=20.4
Q ss_pred EEeEeccCCCCcchhHHhhhcC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKR 240 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~ 240 (316)
.++++|.+|+|||||++.|.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
No 470
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.50 E-value=0.024 Score=51.04 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.9
Q ss_pred EEeEeccCCCCcchhHHhhhcC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKR 240 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~ 240 (316)
.++++|.+|+|||||+++|.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 4899999999999999999863
No 471
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.45 E-value=0.028 Score=51.09 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.7
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.++++|.+|+|||||++.|.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999754
No 472
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.44 E-value=0.013 Score=49.46 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=19.9
Q ss_pred EEeEeccCCCCcchhHHhhhcC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKR 240 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~ 240 (316)
.++|+|.+|+|||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 473
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.37 E-value=0.028 Score=48.29 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.4
Q ss_pred eEEeEeccCCCCcchhHHhhhcC
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKR 240 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~ 240 (316)
..|+++|.+|+||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999753
No 474
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.34 E-value=0.019 Score=53.03 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=20.8
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.++|+|.+|+|||||++.|.+--
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 58999999999999999999743
No 475
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.33 E-value=0.028 Score=45.57 Aligned_cols=19 Identities=37% Similarity=0.461 Sum_probs=17.9
Q ss_pred EEeEeccCCCCcchhHHhh
Q 021210 219 RAGIVGYPNVGKSSLINRL 237 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L 237 (316)
.|+++|.||+||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999999
No 476
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.32 E-value=0.028 Score=50.32 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.8
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.++++|.+|+|||||++.|.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999754
No 477
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.32 E-value=0.031 Score=50.35 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.7
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.++++|.+|+|||||++.|.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999753
No 478
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.30 E-value=0.034 Score=47.26 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.4
Q ss_pred eEEeEeccCCCCcchhHHhhhcC
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKR 240 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~ 240 (316)
..|+++|.+|+||||+.+.|.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999754
No 479
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.29 E-value=0.037 Score=46.15 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.3
Q ss_pred ceEEeEeccCCCCcchhHHhhhc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLK 239 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~ 239 (316)
+..|+++|.||+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999974
No 480
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.24 E-value=0.032 Score=45.48 Aligned_cols=22 Identities=23% Similarity=0.078 Sum_probs=19.5
Q ss_pred EEeEeccCCCCcchhHHhhhcC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKR 240 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~ 240 (316)
.|+++|.+|+||||+.+.|.+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999753
No 481
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.18 E-value=0.037 Score=45.68 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.6
Q ss_pred eEEeEeccCCCCcchhHHhhhc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLK 239 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~ 239 (316)
-.++++|.+|+||||+.+.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3589999999999999999864
No 482
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.13 E-value=0.032 Score=47.30 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.4
Q ss_pred EEeEeccCCCCcchhHHhhhc
Q 021210 219 RAGIVGYPNVGKSSLINRLLK 239 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~ 239 (316)
.|+++|.+|+||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999875
No 483
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.08 E-value=0.031 Score=46.44 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.8
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.++++|..|+|||||++.|.+.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999998754
No 484
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.03 E-value=0.049 Score=45.24 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=19.7
Q ss_pred EEeEeccCCCCcchhHHhhhcC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKR 240 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~ 240 (316)
.++++|.+|+|||||++++.+.
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998754
No 485
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=92.96 E-value=0.075 Score=50.30 Aligned_cols=44 Identities=11% Similarity=-0.005 Sum_probs=29.6
Q ss_pred CCCEEEEEEccCCCC--hHhHHHHHHHHHhcCceEEEeccccccch
Q 021210 147 NRKRILVLNREDMIS--MADRNAWATYFAKQGTKVIFSNGQLGMGT 190 (316)
Q Consensus 147 ~k~~IlVlNK~DLv~--~~~~~~~~~~~~~~g~~vi~iSa~~g~gi 190 (316)
.||++++.||.|..- ....+...++..+.+..++++||+....+
T Consensus 199 ~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~E~el 244 (363)
T 1jal_A 199 LKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAIESEI 244 (363)
T ss_dssp TSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHHHHHG
T ss_pred CCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHHHHHH
Confidence 489999999999641 22233444445555778999999865443
No 486
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.95 E-value=0.041 Score=45.39 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=19.8
Q ss_pred EEeEeccCCCCcchhHHhhhcC
Q 021210 219 RAGIVGYPNVGKSSLINRLLKR 240 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~ 240 (316)
.|.++|.||+||||+.+.|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999999863
No 487
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=92.94 E-value=0.071 Score=50.69 Aligned_cols=81 Identities=12% Similarity=0.135 Sum_probs=50.1
Q ss_pred hhhccccCCcceEEEeccccc--cccccchHH------HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH---HHHHH---
Q 021210 79 EECDWADLDADLYYWTKSLRP--VQWYPGHIA------KTEKELKDQLKLMDVVIEVRDARIPLSTTHP---LMDQW--- 144 (316)
Q Consensus 79 e~e~~~~~d~~~~~~~~~~~~--i~~~Pgh~~------~~~r~l~~~i~~aDlIl~VvDar~~~~~~~~---~i~~~--- 144 (316)
..-.+.|+|...-...-.-.. +.++||... ...+++...++++|++++|+|+.+|....+. ++..+
T Consensus 100 ~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~ 179 (376)
T 4a9a_A 100 AEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGVGIR 179 (376)
T ss_dssp GGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHTTEE
T ss_pred cCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHHHHHHHHHHHHhhHh
Confidence 344566777655433322222 556777532 2345677889999999999999876533221 12111
Q ss_pred hCCCCEEEEEEccCC
Q 021210 145 LGNRKRILVLNREDM 159 (316)
Q Consensus 145 l~~k~~IlVlNK~DL 159 (316)
+..+|.++++||+|.
T Consensus 180 l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 180 LNKTPPDILIKKKEK 194 (376)
T ss_dssp ETCCCCCEEEEECSS
T ss_pred hccCChhhhhhHhhh
Confidence 236789999999996
No 488
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.93 E-value=0.036 Score=46.56 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=19.4
Q ss_pred EEeEeccCCCCcchhHHhhhc
Q 021210 219 RAGIVGYPNVGKSSLINRLLK 239 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~ 239 (316)
.|+++|.+|+||||+.+.|.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 489999999999999999975
No 489
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.92 E-value=0.043 Score=46.62 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.0
Q ss_pred eEEeEeccCCCCcchhHHhhhc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLK 239 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~ 239 (316)
..|+++|.+|+||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999976
No 490
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.92 E-value=0.038 Score=49.80 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.8
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.++++|.+|+|||||++.|.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999753
No 491
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.90 E-value=0.06 Score=52.08 Aligned_cols=62 Identities=11% Similarity=0.127 Sum_probs=44.7
Q ss_pred eEEEEEeCCCCCCCCcHHHHHHhC-CCCEEEEEEccCCCChHhHHHHHHHHH----hcCceEEEecc
Q 021210 123 VVIEVRDARIPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNAWATYFA----KQGTKVIFSNG 184 (316)
Q Consensus 123 lIl~VvDar~~~~~~~~~i~~~l~-~k~~IlVlNK~DLv~~~~~~~~~~~~~----~~g~~vi~iSa 184 (316)
++++|+|++.++...+..+.+.+. +.++|+|+||+|.++..+...+.+.+. ..|+.++++|.
T Consensus 151 ~v~fI~d~~~~l~~~Dieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp EEEEECCCC---CHHHHHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 477888998888877777877776 679999999999998887665554443 45677788875
No 492
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.89 E-value=0.04 Score=50.91 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=21.6
Q ss_pred cceEEeEeccCCCCcchhHHhhhcC
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~ 240 (316)
.+..++|+|.+|+|||||++.|.+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 3456999999999999999999863
No 493
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.89 E-value=0.048 Score=46.37 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=21.4
Q ss_pred ceEEeEeccCCCCcchhHHhhhcC
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~~ 240 (316)
+..|+++|.+|+||||+.+.|.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 456999999999999999999875
No 494
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.88 E-value=0.078 Score=48.43 Aligned_cols=25 Identities=16% Similarity=0.034 Sum_probs=21.7
Q ss_pred cceEEeEeccCCCCcchhHHhhhcC
Q 021210 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (316)
Q Consensus 216 ~~~~i~ivG~pNvGKSTLiN~L~~~ 240 (316)
.+..|+|+|.+|+|||||.+.|.+.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998753
No 495
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.84 E-value=0.034 Score=47.62 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=19.5
Q ss_pred EEeEeccCCCCcchhHHhhhc
Q 021210 219 RAGIVGYPNVGKSSLINRLLK 239 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~ 239 (316)
-++++|.+|+|||||++.|.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999986
No 496
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.82 E-value=0.033 Score=47.22 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.1
Q ss_pred eEEeEeccCCCCcchhHHhhhcC
Q 021210 218 VRAGIVGYPNVGKSSLINRLLKR 240 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~~ 240 (316)
..|+++|.+|+||||+.+.|.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999753
No 497
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.82 E-value=0.036 Score=52.52 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.7
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.++++|.+|+|||||+++|.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 38999999999999999999754
No 498
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.75 E-value=0.045 Score=45.46 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.2
Q ss_pred ceEEeEeccCCCCcchhHHhhhc
Q 021210 217 AVRAGIVGYPNVGKSSLINRLLK 239 (316)
Q Consensus 217 ~~~i~ivG~pNvGKSTLiN~L~~ 239 (316)
+..|+++|.+|+||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999974
No 499
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.70 E-value=0.042 Score=50.28 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.8
Q ss_pred EEeEeccCCCCcchhHHhhhcCc
Q 021210 219 RAGIVGYPNVGKSSLINRLLKRR 241 (316)
Q Consensus 219 ~i~ivG~pNvGKSTLiN~L~~~~ 241 (316)
.++++|..|+|||||++.|.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48999999999999999999754
No 500
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.68 E-value=0.044 Score=45.44 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.6
Q ss_pred eEEeEeccCCCCcchhHHhhhc
Q 021210 218 VRAGIVGYPNVGKSSLINRLLK 239 (316)
Q Consensus 218 ~~i~ivG~pNvGKSTLiN~L~~ 239 (316)
..|+|.|.||+||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999865
Done!