BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021213
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
Length = 319
Score = 290 bits (741), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 157/307 (51%), Positives = 197/307 (64%), Gaps = 13/307 (4%)
Query: 1 MLFFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE 60
+ F VGFIGLGNMG MA NLMK GY + ++DV + K F D G +P +VAE
Sbjct: 18 LYFQSMPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAE 77
Query: 61 ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCI 120
+D +ITMLP+S + + + Y+G NG+L+ + LLIDSSTIDP S+ ++ V
Sbjct: 78 KADRIITMLPTSINAI-EAYSGANGILK--KVKKGSLLIDSSTIDPAVSKELAKEV---- 130
Query: 121 LKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG 180
EK + V +DAPVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG
Sbjct: 131 --EKMGA----VFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGA 184
Query: 181 AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVP 240
G G AAKICNN+ +A+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVP
Sbjct: 185 VGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVP 244
Query: 241 GVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSK 300
GVM+GVP++ NY GGF + LMAKDL LA SA L S A IY +C G+ K
Sbjct: 245 GVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKK 304
Query: 301 DFSCVFQ 307
DFS VFQ
Sbjct: 305 DFSSVFQ 311
>pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
Length = 296
Score = 288 bits (738), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 156/300 (52%), Positives = 195/300 (65%), Gaps = 13/300 (4%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VGFIGLGNMG MA NLMK GY + ++DV + K F D G +P +VAE +D +IT
Sbjct: 3 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 62
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
MLP+S + + + Y+G NG+L+ + LLIDSSTIDP S+ ++ V EK +
Sbjct: 63 MLPTSINAI-EAYSGANGILK--KVKKGSLLIDSSTIDPAVSKELAKEV------EKMGA 113
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 187
V +DAPVSGGV AA +G LTFMVGG ED + AA+ L MG N +YCG G G AA
Sbjct: 114 ----VFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAA 169
Query: 188 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 247
KICNN+ +A+SM+G +EA+ LG LG+ L KILN SS RCWSSD+YNPVPGVM+GVP
Sbjct: 170 KICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVP 229
Query: 248 ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 307
++ NY GGF + LMAKDL LA SA L S A IY +C G+ KDFS VFQ
Sbjct: 230 SANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQ 289
>pdb|3Q3C|A Chain A, Crystal Structure Of A Serine Dehydrogenase From
Pseudomonas Aeruginosa Pao1 In Complex With Nad
Length = 299
Score = 172 bits (435), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 120/301 (39%), Positives = 167/301 (55%), Gaps = 15/301 (4%)
Query: 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 65
+ + FIGLG+ G A+NL+KAGY + V D+ + + G + + + +DVV
Sbjct: 3 KQIAFIGLGHXGAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVV 62
Query: 66 ITMLPSSSHQVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEK 124
I+ LP+S H V +Y +GLL + P L+++ STI P ++R I AA L
Sbjct: 63 ISXLPASQH-VEGLYLDDDGLLA---HIAPGTLVLECSTIAPTSARKIHAAARERGL--- 115
Query: 125 KDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNG 184
LDAPVSGG A AGTLTF VGG +A + A+PLF + G+N + G G G
Sbjct: 116 -------AXLDAPVSGGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHAGPDGAG 168
Query: 185 AAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVME 244
AK+CNN +AV +G +EA LG + G+ A L +I SS W+ + YNP PGV E
Sbjct: 169 QVAKVCNNQLLAVLXIGTAEAXALGVANGLEAKVLAEIXRRSSGGNWALEVYNPWPGVXE 228
Query: 245 GVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSC 304
PASR+Y GGF ++L AKDL LA +A+ P S A +Y L + G+ +DFS
Sbjct: 229 NAPASRDYSGGFXAQLXAKDLGLAQEAAQASASSTPXGSLALSLYRLLLKQGYAERDFSV 288
Query: 305 V 305
V
Sbjct: 289 V 289
>pdb|3OBB|A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate
Dehydrogenase From Pseudomonas Aeruginosa Pao1
Length = 300
Score = 172 bits (435), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 120/301 (39%), Positives = 167/301 (55%), Gaps = 15/301 (4%)
Query: 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 65
+ + FIGLG+ G A+NL+KAGY + V D+ + + G + + + +DVV
Sbjct: 4 KQIAFIGLGHXGAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVV 63
Query: 66 ITMLPSSSHQVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEK 124
I+ LP+S H V +Y +GLL + P L+++ STI P ++R I AA L
Sbjct: 64 ISXLPASQH-VEGLYLDDDGLLA---HIAPGTLVLECSTIAPTSARKIHAAARERGL--- 116
Query: 125 KDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNG 184
LDAPVSGG A AGTLTF VGG +A + A+PLF + G+N + G G G
Sbjct: 117 -------AXLDAPVSGGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHAGPDGAG 169
Query: 185 AAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVME 244
AK+CNN +AV +G +EA LG + G+ A L +I SS W+ + YNP PGV E
Sbjct: 170 QVAKVCNNQLLAVLXIGTAEAXALGVANGLEAKVLAEIXRRSSGGNWALEVYNPWPGVXE 229
Query: 245 GVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSC 304
PASR+Y GGF ++L AKDL LA +A+ P S A +Y L + G+ +DFS
Sbjct: 230 NAPASRDYSGGFXAQLXAKDLGLAQEAAQASASSTPXGSLALSLYRLLLKQGYAERDFSV 289
Query: 305 V 305
V
Sbjct: 290 V 290
>pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|B Chain B, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|C Chain C, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|D Chain D, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
Length = 301
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/303 (35%), Positives = 157/303 (51%), Gaps = 21/303 (6%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
+GFIGLG MG MA NL+K G + D+ + G E +VA ASD++ T
Sbjct: 7 IGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFT 66
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
LP++ V V NGP G+L + +++D S++ P ++ LK K +
Sbjct: 67 SLPNAGI-VETVMNGPGGVLSACKA--GTVIVDMSSVSPSST-----------LKMAKVA 112
Query: 128 WENPV-MLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAA 186
E + +DAPVSGG AEAGTLT MVG SE ++ +P+ +GK+ + G G G A
Sbjct: 113 AEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHVGDTGAGDA 172
Query: 187 AKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGV 246
KI NNL + +M ++EAL LG G+ T+ +I+ SS R ++ ++ ME
Sbjct: 173 VKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAK------MEKF 226
Query: 247 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVF 306
S ++ GGFA L KDL LAL + KE V P+T+ A I+ G +D S V
Sbjct: 227 IMSGDFAGGFAMDLQHKDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVI 286
Query: 307 QHY 309
+ +
Sbjct: 287 KVW 289
>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
Length = 287
Score = 137 bits (346), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 147/306 (48%), Gaps = 24/306 (7%)
Query: 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 65
Q GFIGLG MG MA NL+KAG + + + + + + +G TP EV E+ V
Sbjct: 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPXEVVESCPVT 61
Query: 66 ITML--PSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKE 123
ML P+++ +V G +G+L+G R +D ST+DP TS+ I AV + K
Sbjct: 62 FAMLADPAAAEEVC---FGKHGVLEGIGEGRG--YVDMSTVDPATSQRIGVAV---VAKG 113
Query: 124 KKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGN 183
+ L+APVSG AE GTL + G + Y A P F MGK I+ G G
Sbjct: 114 GR-------FLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGK 166
Query: 184 GAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVM 243
GA K+ N+ M M E L LG+ G++ + ++ + + NP+ +
Sbjct: 167 GAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGA-------MANPMFALK 219
Query: 244 EGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFS 303
G+ RN+ F K M KDL LA+A VG ++ A +++ G +DFS
Sbjct: 220 GGLIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFS 279
Query: 304 CVFQHY 309
+F+ Y
Sbjct: 280 AIFKTY 285
>pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde
Reductase [salmonella Typhimurium Lt2]
Length = 299
Score = 134 bits (338), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 103/303 (33%), Positives = 146/303 (48%), Gaps = 22/303 (7%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VGFIGLG G + NL+KAGY + V D N + G T T +AE DV+IT
Sbjct: 8 VGFIGLGIXGKPXSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIIT 67
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKEKKD 126
LP+S H V +V G NG+++G +P +LID S+I P SR IS A+ K
Sbjct: 68 XLPNSPH-VKEVALGENGIIEGA---KPGTVLIDXSSIAPLASREISDAL-------KAK 116
Query: 127 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAA 186
E LDAPVSGG A GTL+ VGG + + L + + ++ G G G
Sbjct: 117 GVE---XLDAPVSGGEPKAIDGTLSVXVGGDKAIFDKYYDLXKAXAGSVVHTGDIGAGNV 173
Query: 187 AKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGV 246
K+ N + +A+++ SEALTL G++ + + + A D+ P
Sbjct: 174 TKLANQVIVALNIAAXSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAP-------X 226
Query: 247 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVF 306
RN+ GF L KDL AL ++ VG PLT+ + L +GH + D S +
Sbjct: 227 VXDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVXEXXQALRADGHGNDDHSALA 286
Query: 307 QHY 309
+Y
Sbjct: 287 CYY 289
>pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
pdb|1YB4|B Chain B, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
Length = 295
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 148/302 (49%), Gaps = 25/302 (8%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
+GFIGLG G A NL +AG+++ V + ++ S +G ET +V E +D++
Sbjct: 6 LGFIGLGIXGSPXAINLARAGHQLHVTTIGPVADELLS-LGAVNVETARQVTEFADIIFI 64
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
+P + QV DV G +G + S++ + ++D S+I P ++ + V+ E
Sbjct: 65 XVPDTP-QVEDVLFGEHGCAK--TSLQGKTIVDXSSISPIETKRFAQRVN-----EXGAD 116
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 187
+ LDAPVSGG + A GTL+ VGG + + KPLF +GKN GG G+G
Sbjct: 117 Y-----LDAPVSGGEIGAREGTLSIXVGGEQKVFDRVKPLFDILGKNITLVGGNGDGQTC 171
Query: 188 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS--SSARCWSSDSYNPVPGVMEG 245
K+ N + +A+++ VSEAL G + + L +S+R +
Sbjct: 172 KVANQIIVALNIEAVSEALVFASKAGADPVRVRQALXGGFASSRILEVHGERXI------ 225
Query: 246 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCV 305
+R + GF L KDLNLAL SAK + ++ P T+ Q+++ NG D S
Sbjct: 226 ---NRTFEPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAX 282
Query: 306 FQ 307
Q
Sbjct: 283 VQ 284
>pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
Length = 287
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/303 (30%), Positives = 145/303 (47%), Gaps = 24/303 (7%)
Query: 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVI 66
+ GF+GLG MG MA+NL++AG+ + V + N +G +P EV A D+ I
Sbjct: 3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITI 62
Query: 67 TML--PSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEK 124
ML P+++ +V G NG+L+G R ID ST+D +TS I AAV+
Sbjct: 63 AMLADPAAAREVC---FGANGVLEGIGGGRG--YIDMSTVDDETSTAIGAAVTA------ 111
Query: 125 KDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNG 184
L+APVSG AE GTL + G + + A P F ++GK ++ G G G
Sbjct: 112 ----RGGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVGQG 167
Query: 185 AAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVME 244
A K+ N+ M M + E + LG++ G+ L ++L++ + NP+
Sbjct: 168 ARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGA-------MANPMFKGKG 220
Query: 245 GVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSC 304
+ S + F K M KDL LA+ +G + A + + + GH +DF+
Sbjct: 221 QMLLSGEFPTSFPLKHMQKDLRLAVELGDRLGQPLHGAATANESFKRARAAGHADEDFAA 280
Query: 305 VFQ 307
VF+
Sbjct: 281 VFR 283
>pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|B Chain B, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|C Chain C, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|D Chain D, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
Length = 289
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 142/284 (50%), Gaps = 25/284 (8%)
Query: 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 65
+ V FIGLG MG+ MA +L + + + ++ + G ++ P E + V+
Sbjct: 2 EKVAFIGLGAMGYPMAGHLARRFPTLVWNRTFEKALRHQEEFG--SEAVPLERVAEARVI 59
Query: 66 ITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 125
T LP++ +V +V L+ G +D+++ +P+ SR ++ L+EK
Sbjct: 60 FTCLPTT-REVYEVAEALYPYLREGT-----YWVDATSGEPEASRRLAER-----LREKG 108
Query: 126 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGA 185
++ LDAPVSGG AEAGTLT M+GG E+A + +P FL+ K ++ G G G
Sbjct: 109 VTY-----LDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRP-FLAYAKKVVHVGPVGAGH 162
Query: 186 AAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 245
A K NN +AV++ E L G+SA +++N+SS R S+ + N +P +
Sbjct: 163 AVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGR--SNATENLIPQRV-- 218
Query: 246 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIY 289
+R + FA L+ KDL +A+ PL A+++Y
Sbjct: 219 --LTRAFPKTFALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVY 260
>pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|B Chain B, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|C Chain C, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|D Chain D, Structure Of The Cytokine-Like Nuclear Factor N-Pac
Length = 316
Score = 117 bits (293), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 133/306 (43%), Gaps = 22/306 (7%)
Query: 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDV 64
D+ +GF+GLG MG + SNL+K G+ + V + +F G TP EV D+
Sbjct: 30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDI 89
Query: 65 VITMLPSSSHQVLDVYNGPNGLLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNCILKE 123
+ S D+ GP+G+LQG +RP + +D ST+D T ++ + +
Sbjct: 90 TFACV-SDPKAAKDLVLGPSGVLQG---IRPGKCYVDMSTVDADTVTELAQVIVS----- 140
Query: 124 KKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGN 183
L+APVSG + G L + G Y+ F +MGK + + G GN
Sbjct: 141 -----RGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGN 195
Query: 184 GAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVM 243
A + N+ M ++E LTL Q G S TL ILN D ++
Sbjct: 196 AAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLD--QKCQNIL 253
Query: 244 EGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFS 303
+G N+ F K + KDL LA+A V P+ + A ++Y + D S
Sbjct: 254 QG-----NFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMS 308
Query: 304 CVFQHY 309
V++ Y
Sbjct: 309 AVYRAY 314
>pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|B Chain B, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|C Chain C, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|D Chain D, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
Length = 289
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 138/284 (48%), Gaps = 25/284 (8%)
Query: 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 65
+ V FIGLG G+ A +L + + + ++ + G ++ P E + V+
Sbjct: 2 EKVAFIGLGAXGYPXAGHLARRFPTLVWNRTFEKALRHQEEFG--SEAVPLERVAEARVI 59
Query: 66 ITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 125
T LP++ +V +V L+ G +D+++ +P+ SR ++ L+EK
Sbjct: 60 FTCLPTT-REVYEVAEALYPYLREGT-----YWVDATSGEPEASRRLAER-----LREKG 108
Query: 126 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGA 185
++ LDAPVSGG AEAGTLT +GG E+A + +P FL+ K ++ G G G
Sbjct: 109 VTY-----LDAPVSGGTSGAEAGTLTVXLGGPEEAVERVRP-FLAYAKKVVHVGPVGAGH 162
Query: 186 AAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 245
A K NN +AV++ E L G+SA +++N+SS R S+ + N +P +
Sbjct: 163 AVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGR--SNATENLIPQRV-- 218
Query: 246 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIY 289
+R + FA L+ KDL +A PL A+++Y
Sbjct: 219 --LTRAFPKTFALGLLVKDLGIAXGVLDGEKAPSPLLRLAREVY 260
>pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis
(Atglyr1)
Length = 310
Score = 110 bits (276), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 136/303 (44%), Gaps = 26/303 (8%)
Query: 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67
VGF+GLG MG M+ NL+K G+K+ V + + + G E+P EV + I
Sbjct: 24 VGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIA 83
Query: 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127
ML S L V G+L+ + ID ST+D +TS I+ A++
Sbjct: 84 ML-SDPCAALSVVFDKGGVLE--QICEGKGYIDMSTVDAETSLKINEAITG--------- 131
Query: 128 WENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 187
+ ++ PVSG AE G L + G + ++ + P F +GK + Y G GNGA
Sbjct: 132 -KGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKM 190
Query: 188 KICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVP 247
K+ N+ M M SE L L G+S+ TL IL+ + NP + +G
Sbjct: 191 KLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMT-------NP---MFKGKG 240
Query: 248 ASRN---YGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSC 304
S N Y F K KD+ LALA E V P+ + A + + K G DFS
Sbjct: 241 PSMNKSSYPPAFPLKHQQKDMRLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSA 300
Query: 305 VFQ 307
V +
Sbjct: 301 VIE 303
>pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
pdb|4DLL|B Chain B, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
Length = 320
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/307 (25%), Positives = 135/307 (43%), Gaps = 30/307 (9%)
Query: 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASD 63
+ + + F+G G+ G A L +AGY + V + + +G E A +D
Sbjct: 30 YARKITFLGTGSXGLPXARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDAD 89
Query: 64 VVITMLPSSSHQVLDVYNGPNGLLQG-GNSVRP-QLLIDSSTIDPQTSRNISAAVSNCIL 121
+V++ L + + V DV QG + +P L +D ++I P+ +R+ +A + +
Sbjct: 90 IVVSXLENGA-VVQDVL-----FAQGVAAAXKPGSLFLDXASITPREARDHAARLGALGI 143
Query: 122 KEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGA 181
LD PVSGG + AE GTL GG ++ + PL G+ T + G
Sbjct: 144 AH----------LDTPVSGGTVGAEQGTLVIXAGGKPADFERSLPLLKVFGRAT-HVGPH 192
Query: 182 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS--SSARCWSSDSYNPV 239
G+G K+ N + +++ V+EAL G + + + + + +R V
Sbjct: 193 GSGQLTKLANQXIVGITIGAVAEALLFATKGGADXAKVKEAITGGFADSRVLQLHGQRXV 252
Query: 240 PGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDS 299
R++ + KD ALA+A+E+G D P+T + +YA+ E+G
Sbjct: 253 ---------ERDFAPRARLSIQLKDXRNALATAQEIGFDAPITGLFEQLYAEGVEHGLTD 303
Query: 300 KDFSCVF 306
D S +F
Sbjct: 304 LDQSGLF 310
>pdb|3QHA|A Chain A, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
pdb|3QHA|B Chain B, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
Length = 296
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 125/282 (44%), Gaps = 18/282 (6%)
Query: 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVI 66
+G+IGLGNMG MA+ + + + V+D+ M ++ G ++ +VA A + I
Sbjct: 17 KLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAAADLIHI 76
Query: 67 TMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKD 126
T+L + QV +V G + G + I S T + +R++ A
Sbjct: 77 TVLDDA--QVREVVGELAGHAKPGTVIAIHSTI-SDTTAVELARDLKA------------ 121
Query: 127 SWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAA 186
+ ++DAPVSGG AA G L MVG + Y+ KP F I+ G G G
Sbjct: 122 --RDIHIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFKHWAAVVIHAGEPGAGTR 179
Query: 187 AKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGV 246
K+ N+ S EA+ L ++ G+ L +++ + A + + +
Sbjct: 180 MKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRDNMKDLE 239
Query: 247 PASRNYGGGFASK-LMAKDLNLALASAKEVGVDCPLTSQAQD 287
P + Y ++ L KDL+LALA + V VD PL A +
Sbjct: 240 PDNFLYQPFLHTRGLGEKDLSLALALGEAVSVDLPLARLAYE 281
>pdb|4GBJ|A Chain A, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|B Chain B, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|C Chain C, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|D Chain D, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
Length = 297
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/312 (21%), Positives = 126/312 (40%), Gaps = 44/312 (14%)
Query: 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 65
+ + F+GLGN+G +A L++AGY++ V + + + + +G E + +V
Sbjct: 6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIV 65
Query: 66 ITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 125
++L + V ++++ G + V + STI P+TSR ++ +
Sbjct: 66 FSVL-ADDAAVEELFSXELVEKLGKDGVH----VSXSTISPETSRQLA----------QV 110
Query: 126 DSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG---GAG 182
W + AP+ A A + G+ A + KP+ + K G GA
Sbjct: 111 HEWYGAHYVGAPIFARPEAVRAKVGNICLSGNAGAKERIKPIVENFVKGVFDFGDDPGAA 170
Query: 183 NGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS---------SARCWSS 233
N K+ N +A S+ EA T + GIS ++ + L S+ + +S
Sbjct: 171 N--VIKLAGNFXIACSLEXXGEAFTXAEKNGISRQSIYEXLTSTLFAAPIFQNYGKLVAS 228
Query: 234 DSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLC 293
++Y PV F L KD+NL L +A +V P ++ +
Sbjct: 229 NTYEPV---------------AFRFPLGLKDINLTLQTASDVNAPXPFADIIRNRFISGL 273
Query: 294 ENGHDSKDFSCV 305
G ++ D+ +
Sbjct: 274 AKGRENLDWGAL 285
>pdb|3G0O|A Chain A, Crystal Structure Of 3-Hydroxyisobutyrate Dehydrogenase
(Ygbj) From Salmonella Typhimurium
Length = 303
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 105/249 (42%), Gaps = 23/249 (9%)
Query: 64 VVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKE 123
V++ + + QVL +G L + G++V SSTI ++ I+AA++ L
Sbjct: 69 VILVVNAAQVRQVLFGEDGVAHLXKPGSAVXV-----SSTISSADAQEIAAALTALNLN- 122
Query: 124 KKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGA-G 182
LDAPVSGG + A G T GSE A+ KP+ ++ N G
Sbjct: 123 ---------XLDAPVSGGAVKAAQGEXTVXASGSEAAFTRLKPVLDAVASNVYRISDTPG 173
Query: 183 NGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGV 242
G+ KI + L V + +EA L GI ++ ++ W + N V
Sbjct: 174 AGSTVKIIHQLLAGVHIAAAAEAXALAARAGIPLDVXYDVVTHAAGNSWXFE--NRXQHV 231
Query: 243 MEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDF 302
++G +Y A + KDL L +AK + PL S A + + G+ +D
Sbjct: 232 VDG-----DYTPRSAVDIFVKDLGLVADTAKALRFPLPLASTALNXFTSASNAGYGKEDD 286
Query: 303 SCVFQHYYG 311
S V + + G
Sbjct: 287 SAVIKIFSG 295
>pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W8Z|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 470
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 96/233 (41%), Gaps = 33/233 (14%)
Query: 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 65
+G IGL MG +A N+ GY +AV+ N ++ +D + A+ ++V
Sbjct: 5 HQIGVIGLAVMGKNLALNIESKGYSVAVY----NRLREKTD-------EFLQEAKGKNIV 53
Query: 66 ITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID---PQTSR-NISAAVSNCIL 121
T S + ++ P +L + P +TI+ P + +I N
Sbjct: 54 GTY---SIEEFVNALEKPRKILLMVKAGAPT----DATIEQLKPHLEKGDIVIDGGNTYF 106
Query: 122 KEKKDSWENPVMLDAPVSG-GVLAAEAGTL---TFMVGGSEDAYQAAKPLFLSMGKN--- 174
K+ + + L G GV E G L + M GG ++A++ +P+F ++
Sbjct: 107 KDTQRRNKELAELGIHFIGTGVSGGEEGALKGPSIMPGGQKEAHELVRPIFEAIAAKVDG 166
Query: 175 ---TIYCGGAGNGAAAKICNNLTMAVSMLGVSEA-LTLGQSLGISASTLTKIL 223
T Y G G G K+ +N M ++EA L LG+ A+ L ++
Sbjct: 167 EPCTTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELHEVF 219
>pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W90|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 471
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 96/233 (41%), Gaps = 33/233 (14%)
Query: 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 65
+G IGL MG +A N+ GY +AV+ N ++ +D + A+ ++V
Sbjct: 6 HQIGVIGLAVMGKNLALNIESKGYSVAVY----NRLREKTD-------EFLQEAKGKNIV 54
Query: 66 ITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID---PQTSR-NISAAVSNCIL 121
T S + ++ P +L + P +TI+ P + +I N
Sbjct: 55 GTY---SIEEFVNALEKPRKILLMVKAGAPT----DATIEQLKPHLEKGDIVIDGGNTYF 107
Query: 122 KEKKDSWENPVMLDAPVSG-GVLAAEAGTL---TFMVGGSEDAYQAAKPLFLSMGKN--- 174
K+ + + L G GV E G L + M GG ++A++ +P+F ++
Sbjct: 108 KDTQRRNKELAELGIHFIGTGVSGGEEGALKGPSIMPGGQKEAHELVRPIFEAIAAKVDG 167
Query: 175 ---TIYCGGAGNGAAAKICNNLTMAVSMLGVSEA-LTLGQSLGISASTLTKIL 223
T Y G G G K+ +N M ++EA L LG+ A+ L ++
Sbjct: 168 EPCTTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELHEVF 220
>pdb|2YYY|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase
pdb|2YYY|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase
Length = 343
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 25 MKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSS-SHQVLDVYNGP 83
++ GYK+ V + +K+F D G+P + T ++ E +D+V+ P Q L+ P
Sbjct: 45 VEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDADIVVDGAPKKIGKQNLENIYKP 104
Query: 84 N---GLLQGGNSVR 94
+ +LQGG +
Sbjct: 105 HKVKAILQGGEKAK 118
>pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
pdb|2ZYG|B Chain B, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
Length = 480
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 83/213 (38%), Gaps = 23/213 (10%)
Query: 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVV 65
Q +G +G+ MG +A N+ GY ++V + + + K P+ +
Sbjct: 16 QQIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVIAENPGKKLVPYYTVQE---F 72
Query: 66 ITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 125
+ L + +L V G G +S++P L ID + + I + ++
Sbjct: 73 VESLETPRRILLMVKAGA-GTDSAIDSLKPYLDKGDIIIDGGNT-----FFQDTIRRNRE 126
Query: 126 DSWENPVMLDAPVSGGVLAAEAGTL---TFMVGGSEDAYQAAKPLFLSMGKN-------T 175
S E + VSGG E GTL + M GG ++AY+ P+ +
Sbjct: 127 LSAEGFNFIGTGVSGG----EEGTLKGPSIMPGGQKEAYELVAPILKQIAAVAEDGEPCV 182
Query: 176 IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTL 208
Y G G G K+ +N M ++EA L
Sbjct: 183 TYIGADGAGHYVKMVHNGIEYGDMQLIAEAYAL 215
>pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data
pdb|2IZ0|B Chain B, Pex Inhibitor-Home Data
pdb|2IZ0|C Chain C, Pex Inhibitor-Home Data
pdb|2IZ1|A Chain A, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|B Chain B, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|C Chain C, 6pdh Complexed With Pex Inhibitor Synchrotron Data
Length = 474
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 129/334 (38%), Gaps = 84/334 (25%)
Query: 9 GFIGLGNMGFRMASNLMKAGYKMAVHDVNCN----VMKMFSDMG-VPTK---------ET 54
G +G+ MG +A N+ GY +A+++ + V K D V TK E
Sbjct: 9 GVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEK 68
Query: 55 PFEV------AEASDVVI-TMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 107
P + A+D I ++LP +LD+ + L+ GGN+ P +
Sbjct: 69 PRRIMLMVQAGAATDATIKSLLP-----LLDI---GDILIDGGNTHFPDTM--------- 111
Query: 108 TSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL---TFMVGGSEDAYQAA 164
RN A S + GV E G L + M GG ++AY
Sbjct: 112 -RRNAELADSGINF----------------IGTGVSGGEKGALLGPSMMPGGQKEAYDLV 154
Query: 165 KPLFLSM-------GKNTI-YCGGAGNGAAAKICNNLTMAVSMLGVSEALT-LGQSLGIS 215
P+F + GK + Y G G G K+ +N M ++E+ L + LG+S
Sbjct: 155 APIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLS 214
Query: 216 ASTLTKILNSSSARCWSS---DSYNPVPGVMEGVPASRNYGGGF-ASKLMAKDLN----- 266
+ + I W+ DSY + E + + G G+ K++ K N
Sbjct: 215 NAEIQAIFEE-----WNEGELDSY-LIEITKEVLKRKDDEGEGYIVDKILDKAGNKGTGK 268
Query: 267 LALASAKEVGVDCPLTSQAQDIYAKLCENGHDSK 300
SA ++GV PL +++ ++A+ D +
Sbjct: 269 WTSESALDLGVPLPLITES--VFARYISTYKDER 300
>pdb|2IYP|A Chain A, Product Rup
pdb|2IYP|B Chain B, Product Rup
pdb|2IYP|C Chain C, Product Rup
Length = 473
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 129/334 (38%), Gaps = 84/334 (25%)
Query: 9 GFIGLGNMGFRMASNLMKAGYKMAVHDVNCN----VMKMFSDMG-VPTK---------ET 54
G +G+ MG +A N+ GY +A+++ + V K D V TK E
Sbjct: 8 GVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEK 67
Query: 55 PFEV------AEASDVVI-TMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 107
P + A+D I ++LP +LD+ + L+ GGN+ P +
Sbjct: 68 PRRIMLMVQAGAATDATIKSLLP-----LLDI---GDILIDGGNTHFPDTM--------- 110
Query: 108 TSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL---TFMVGGSEDAYQAA 164
RN A S + GV E G L + M GG ++AY
Sbjct: 111 -RRNAELADSGINF----------------IGTGVSGGEKGALLGPSMMPGGQKEAYDLV 153
Query: 165 KPLFLSM-------GKNTI-YCGGAGNGAAAKICNNLTMAVSMLGVSEALT-LGQSLGIS 215
P+F + GK + Y G G G K+ +N M ++E+ L + LG+S
Sbjct: 154 APIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLS 213
Query: 216 ASTLTKILNSSSARCWSS---DSYNPVPGVMEGVPASRNYGGGF-ASKLMAKDLN----- 266
+ + I W+ DSY + E + + G G+ K++ K N
Sbjct: 214 NAEIQAIFEE-----WNEGELDSY-LIEITKEVLKRKDDEGEGYIVDKILDKAGNKGTGK 267
Query: 267 LALASAKEVGVDCPLTSQAQDIYAKLCENGHDSK 300
SA ++GV PL +++ ++A+ D +
Sbjct: 268 WTSESALDLGVPLPLITES--VFARYISTYKDER 299
>pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals
Aspects Of Specificity, Mechanism And Mode Of Inhibition
Length = 472
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 129/334 (38%), Gaps = 84/334 (25%)
Query: 9 GFIGLGNMGFRMASNLMKAGYKMAVHDVNCN----VMKMFSDMG-VPTK---------ET 54
G +G+ MG +A N+ GY +A+++ + V K D V TK E
Sbjct: 7 GVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEK 66
Query: 55 PFEV------AEASDVVI-TMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 107
P + A+D I ++LP +LD+ + L+ GGN+ P +
Sbjct: 67 PRRIMLMVQAGAATDATIKSLLP-----LLDI---GDILIDGGNTHFPDTM--------- 109
Query: 108 TSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL---TFMVGGSEDAYQAA 164
RN A S + GV E G L + M GG ++AY
Sbjct: 110 -RRNAELADSGINF----------------IGTGVSGGEKGALLGPSMMPGGQKEAYDLV 152
Query: 165 KPLFLSM-------GKNTI-YCGGAGNGAAAKICNNLTMAVSMLGVSEALT-LGQSLGIS 215
P+F + GK + Y G G G K+ +N M ++E+ L + LG+S
Sbjct: 153 APIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLS 212
Query: 216 ASTLTKILNSSSARCWSS---DSYNPVPGVMEGVPASRNYGGGF-ASKLMAKDLN----- 266
+ + I W+ DSY + E + + G G+ K++ K N
Sbjct: 213 NAEIQAIFEE-----WNEGELDSY-LIEITKEVLKRKDDEGEGYIVDKILDKAGNKGTGK 266
Query: 267 LALASAKEVGVDCPLTSQAQDIYAKLCENGHDSK 300
SA ++GV PL +++ ++A+ D +
Sbjct: 267 WTSESALDLGVPLPLITES--VFARYISTYKDER 298
>pdb|2IZZ|A Chain A, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|B Chain B, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|C Chain C, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|D Chain D, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
pdb|2IZZ|E Chain E, Crystal Structure Of Human Pyrroline-5-Carboxylate
Reductase
Length = 322
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 12/74 (16%)
Query: 1 MLFFDQSVGFIGLGNMGFRMASNLMKAGYKMAVH-------DVNCNVMKMFSDMGVPTKE 53
+ F SVGFIG G + F +A AG +A H D++ + MGV K
Sbjct: 18 LYFQSMSVGFIGAGQLAFALAKGFTAAGV-LAAHKIMASSPDMDLATVSALRKMGV--KL 74
Query: 54 TPF--EVAEASDVV 65
TP E + SDV+
Sbjct: 75 TPHNKETVQHSDVL 88
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 256 FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 309
F+ K M K ++L L AKE+G+D P + ++I + + +SK VF +Y
Sbjct: 320 FSDKRMKKAISL-LVQAKEIGLDHPKMDKLKEIIREQLQRKQNSK--IIVFTNY 370
>pdb|2GER|A Chain A, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|B Chain B, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|C Chain C, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|D Chain D, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
pdb|2GER|E Chain E, Crystal Structure And Oxidative Mechanism Of Human
Pyrroline-5- Carboxylate Reductase
Length = 321
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 12/68 (17%)
Query: 7 SVGFIGLGNMGFRMASNLMKAGYKMAVH-------DVNCNVMKMFSDMGVPTKETPF--E 57
SVGFIG G + F +A AG +A H D++ + MGV K TP E
Sbjct: 4 SVGFIGAGQLAFALAKGFTAAGV-LAAHKIMASSPDMDLATVSALRKMGV--KLTPHNKE 60
Query: 58 VAEASDVV 65
+ SDV+
Sbjct: 61 TVQHSDVL 68
>pdb|2GR9|A Chain A, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|B Chain B, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|C Chain C, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|D Chain D, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GR9|E Chain E, Crystal Structure Of P5cr Complexed With Nadh
pdb|2GRA|A Chain A, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|B Chain B, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|C Chain C, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|D Chain D, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
pdb|2GRA|E Chain E, Crystal Structure Of Human Pyrroline-5-carboxylate
Reductase Complexed With Nadp
Length = 277
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 12/68 (17%)
Query: 7 SVGFIGLGNMGFRMASNLMKAGYKMAVH-------DVNCNVMKMFSDMGVPTKETPF--E 57
SVGFIG G + F +A AG +A H D++ + MGV K TP E
Sbjct: 4 SVGFIGAGQLAFALAKGFTAAGV-LAAHKIMASSPDMDLATVSALRKMGV--KLTPHNKE 60
Query: 58 VAEASDVV 65
+ SDV+
Sbjct: 61 TVQHSDVL 68
>pdb|1TVJ|A Chain A, Solution Structure Of Chick Cofilin
Length = 166
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 36 VNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVL 77
VN V+K+F+DM V TP E+ + V+ L Q++
Sbjct: 7 VNDEVIKVFNDMKVRKSSTPEEIKKRKKAVLFCLSDDKKQII 48
>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
Length = 329
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVI 66
+VGF+G+G +G MA L G + H+ + +G+ + E+ +SD ++
Sbjct: 147 TVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGL-RQVACSELFASSDFIL 205
Query: 67 TMLP 70
LP
Sbjct: 206 LALP 209
>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|E Chain E, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|F Chain F, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|G Chain G, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|H Chain H, Thermostable Phosphite Dehydrogenase In Complex With Nad
Length = 330
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVI 66
+VGF+G+G +G MA L G + H+ + +G+ + E+ +SD ++
Sbjct: 147 TVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGL-RQVACSELFASSDFIL 205
Query: 67 TMLP 70
LP
Sbjct: 206 LALP 209
>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|B Chain B, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|C Chain C, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|D Chain D, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|E Chain E, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|F Chain F, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|G Chain G, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|H Chain H, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
Length = 381
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHD 35
D+++G +G+GN+G R+ + L G + + D
Sbjct: 119 DRTIGIVGVGNVGSRLQTRLEALGIRTLLCD 149
>pdb|2JNS|A Chain A, Solution Structure Of The Bromodomain-Containing Protein 4
Et Domain
Length = 90
Score = 27.7 bits (60), Expect = 9.6, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 91 NSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKK 125
NS ++ ID T+ P T R + V++C+ K++K
Sbjct: 54 NSNPDEIEIDFETLKPSTLRELERYVTSCLRKKRK 88
>pdb|1VLL|A Chain A, Crystal Structure Of Alanine Dehydrogenase (Af1665) From
Archaeoglobus Fulgidus At 2.80 A Resolution
pdb|1VLL|B Chain B, Crystal Structure Of Alanine Dehydrogenase (Af1665) From
Archaeoglobus Fulgidus At 2.80 A Resolution
Length = 334
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 9 GFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDMGVPTKETPFEVAEAS 62
GFIG G + L + ++ +DV K F D G+ P E A
Sbjct: 141 GFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRC 200
Query: 63 DVVITMLPS 71
DV++T PS
Sbjct: 201 DVLVTTTPS 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,379,873
Number of Sequences: 62578
Number of extensions: 367920
Number of successful extensions: 1120
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1052
Number of HSP's gapped (non-prelim): 52
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)