Query 021213
Match_columns 316
No_of_seqs 231 out of 2140
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 08:29:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021213.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021213hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2084 MmsB 3-hydroxyisobutyr 100.0 5.7E-57 1.2E-61 384.9 32.9 285 6-310 1-286 (286)
2 KOG0409 Predicted dehydrogenas 100.0 4.4E-55 9.6E-60 365.3 31.8 291 5-315 35-326 (327)
3 PRK15059 tartronate semialdehy 100.0 1E-49 2.2E-54 349.3 34.5 285 6-311 1-285 (292)
4 PRK15461 NADH-dependent gamma- 100.0 2.7E-48 5.9E-53 341.9 35.0 287 6-311 2-288 (296)
5 TIGR01692 HIBADH 3-hydroxyisob 100.0 5.6E-48 1.2E-52 339.2 33.7 287 10-309 1-287 (288)
6 PRK11559 garR tartronate semia 100.0 2E-45 4.3E-50 325.0 33.6 287 5-311 2-288 (296)
7 TIGR01505 tartro_sem_red 2-hyd 100.0 4.4E-45 9.6E-50 321.8 34.3 285 7-311 1-285 (291)
8 PLN02858 fructose-bisphosphate 100.0 1.5E-44 3.2E-49 368.0 33.1 289 5-311 4-293 (1378)
9 PLN02858 fructose-bisphosphate 100.0 8.9E-43 1.9E-47 354.9 34.0 289 5-311 324-613 (1378)
10 PRK12490 6-phosphogluconate de 100.0 7.9E-42 1.7E-46 301.5 25.9 281 6-313 1-294 (299)
11 PLN02350 phosphogluconate dehy 100.0 1.2E-40 2.5E-45 307.0 27.7 265 6-294 7-299 (493)
12 PRK09599 6-phosphogluconate de 100.0 3.1E-39 6.8E-44 285.4 25.9 280 6-313 1-295 (301)
13 TIGR00872 gnd_rel 6-phosphoglu 100.0 9.4E-36 2E-40 262.5 24.3 281 6-313 1-293 (298)
14 PTZ00142 6-phosphogluconate de 100.0 2E-34 4.4E-39 265.6 25.7 257 6-286 2-284 (470)
15 TIGR00873 gnd 6-phosphoglucona 100.0 1.5E-33 3.2E-38 260.1 24.6 256 7-286 1-280 (467)
16 TIGR03026 NDP-sugDHase nucleot 100.0 8.1E-33 1.8E-37 254.6 24.1 259 6-294 1-298 (411)
17 PRK09287 6-phosphogluconate de 100.0 2.2E-32 4.8E-37 251.1 24.0 247 16-286 1-273 (459)
18 COG1023 Gnd Predicted 6-phosph 100.0 4.1E-31 8.8E-36 214.0 22.3 252 6-286 1-267 (300)
19 PF03446 NAD_binding_2: NAD bi 100.0 4E-32 8.8E-37 218.7 14.7 162 5-180 1-163 (163)
20 PRK14618 NAD(P)H-dependent gly 100.0 4.1E-31 8.8E-36 236.7 16.4 282 5-312 4-323 (328)
21 PRK11064 wecC UDP-N-acetyl-D-m 100.0 6.3E-29 1.4E-33 227.9 27.3 262 5-293 3-296 (415)
22 PRK15182 Vi polysaccharide bio 100.0 4.3E-29 9.3E-34 228.9 24.9 261 4-292 5-293 (425)
23 PRK00094 gpsA NAD(P)H-dependen 100.0 8.2E-30 1.8E-34 228.5 16.7 282 6-311 2-324 (325)
24 PRK15057 UDP-glucose 6-dehydro 100.0 2.6E-28 5.7E-33 221.1 25.6 251 6-294 1-285 (388)
25 PRK14619 NAD(P)H-dependent gly 100.0 1.4E-28 3E-33 218.2 17.0 257 5-312 4-301 (308)
26 COG0240 GpsA Glycerol-3-phosph 100.0 4.7E-28 1E-32 209.0 18.6 288 5-312 1-324 (329)
27 COG1004 Ugd Predicted UDP-gluc 100.0 3.2E-26 6.9E-31 200.1 24.5 261 6-294 1-296 (414)
28 PRK06129 3-hydroxyacyl-CoA deh 99.9 1.3E-25 2.8E-30 199.2 23.2 265 6-307 3-294 (308)
29 PLN02353 probable UDP-glucose 99.9 6E-24 1.3E-28 196.5 26.8 260 5-291 1-305 (473)
30 COG0362 Gnd 6-phosphogluconate 99.9 1.1E-24 2.5E-29 188.6 17.3 259 3-286 1-285 (473)
31 PRK08229 2-dehydropantoate 2-r 99.9 5.9E-24 1.3E-28 191.8 18.2 264 5-298 2-322 (341)
32 COG0677 WecC UDP-N-acetyl-D-ma 99.9 1.3E-23 2.8E-28 183.0 18.7 257 5-289 9-298 (436)
33 PLN02688 pyrroline-5-carboxyla 99.9 2.9E-23 6.3E-28 180.8 19.3 245 6-296 1-264 (266)
34 PRK07679 pyrroline-5-carboxyla 99.9 2.5E-23 5.3E-28 182.2 16.6 245 4-296 2-269 (279)
35 PRK07531 bifunctional 3-hydrox 99.9 1.1E-22 2.5E-27 190.8 21.6 262 5-306 4-292 (495)
36 PTZ00345 glycerol-3-phosphate 99.9 4.6E-23 1E-27 184.4 17.3 285 5-312 11-356 (365)
37 PRK12439 NAD(P)H-dependent gly 99.9 1.6E-22 3.6E-27 181.5 19.0 286 4-312 6-330 (341)
38 TIGR03376 glycerol3P_DH glycer 99.9 7.2E-23 1.6E-27 182.0 13.6 278 7-307 1-340 (342)
39 PRK12557 H(2)-dependent methyl 99.9 2.4E-21 5.1E-26 172.5 21.4 201 6-223 1-236 (342)
40 PRK14620 NAD(P)H-dependent gly 99.9 3E-21 6.5E-26 172.9 18.6 281 6-310 1-325 (326)
41 PRK12491 pyrroline-5-carboxyla 99.9 6.6E-21 1.4E-25 165.4 19.4 256 4-296 1-267 (272)
42 KOG2653 6-phosphogluconate deh 99.9 5.3E-21 1.1E-25 163.4 14.9 202 6-225 7-225 (487)
43 COG0345 ProC Pyrroline-5-carbo 99.9 4.2E-20 9.1E-25 157.1 17.4 254 5-296 1-264 (266)
44 PRK09260 3-hydroxybutyryl-CoA 99.9 2.7E-20 5.8E-25 163.8 16.7 191 6-227 2-221 (288)
45 PRK12921 2-dehydropantoate 2-r 99.8 3.6E-20 7.7E-25 164.6 16.9 262 6-294 1-302 (305)
46 PRK06130 3-hydroxybutyryl-CoA 99.8 5E-20 1.1E-24 164.0 17.4 195 6-228 5-221 (311)
47 PRK06522 2-dehydropantoate 2-r 99.8 1.7E-19 3.6E-24 160.3 19.9 260 6-294 1-299 (304)
48 PRK08268 3-hydroxy-acyl-CoA de 99.8 1.2E-19 2.5E-24 170.3 18.9 188 6-227 8-226 (507)
49 PRK08507 prephenate dehydrogen 99.8 6E-19 1.3E-23 154.2 22.0 192 6-224 1-207 (275)
50 PRK11880 pyrroline-5-carboxyla 99.8 3.4E-19 7.5E-24 155.3 19.7 253 5-296 2-265 (267)
51 PRK06249 2-dehydropantoate 2-r 99.8 1.5E-19 3.1E-24 161.0 17.4 262 1-294 1-310 (313)
52 PRK07066 3-hydroxybutyryl-CoA 99.8 1.2E-18 2.5E-23 153.7 21.1 264 6-307 8-295 (321)
53 PF14833 NAD_binding_11: NAD-b 99.8 4.3E-20 9.3E-25 141.3 10.0 122 182-309 1-122 (122)
54 PRK11199 tyrA bifunctional cho 99.8 1.7E-18 3.7E-23 157.0 20.2 179 5-221 98-279 (374)
55 PRK07819 3-hydroxybutyryl-CoA 99.8 1E-18 2.2E-23 153.0 17.1 199 2-227 2-226 (286)
56 PRK07417 arogenate dehydrogena 99.8 4.5E-19 9.8E-24 155.2 14.9 174 6-200 1-187 (279)
57 PLN02545 3-hydroxybutyryl-CoA 99.8 7.5E-19 1.6E-23 155.2 15.8 193 6-226 5-222 (295)
58 PRK06476 pyrroline-5-carboxyla 99.8 3E-18 6.5E-23 148.5 18.9 247 6-293 1-254 (258)
59 PRK08655 prephenate dehydrogen 99.8 5.8E-18 1.3E-22 156.3 21.8 196 6-223 1-202 (437)
60 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.8 1.9E-18 4.1E-23 161.7 18.7 188 5-227 5-224 (503)
61 PRK07680 late competence prote 99.8 5.4E-18 1.2E-22 148.1 19.0 196 6-227 1-206 (273)
62 PRK08293 3-hydroxybutyryl-CoA 99.8 2.1E-18 4.5E-23 151.7 15.5 196 6-227 4-225 (287)
63 PRK05708 2-dehydropantoate 2-r 99.8 2E-18 4.2E-23 152.9 15.3 265 5-295 2-299 (305)
64 PRK07530 3-hydroxybutyryl-CoA 99.8 4.1E-18 9E-23 150.3 17.2 195 3-226 2-222 (292)
65 COG1893 ApbA Ketopantoate redu 99.8 4.6E-18 9.9E-23 149.7 17.2 260 6-295 1-302 (307)
66 PRK06035 3-hydroxyacyl-CoA deh 99.8 9.3E-18 2E-22 147.9 17.3 195 6-227 4-225 (291)
67 PTZ00431 pyrroline carboxylate 99.8 1.5E-17 3.2E-22 144.0 17.4 249 5-296 3-260 (260)
68 PRK05808 3-hydroxybutyryl-CoA 99.8 3.7E-17 8E-22 143.5 16.9 194 6-227 4-222 (282)
69 PRK06928 pyrroline-5-carboxyla 99.7 6.2E-17 1.3E-21 141.4 16.6 251 6-294 2-265 (277)
70 PRK07634 pyrroline-5-carboxyla 99.7 1.5E-16 3.3E-21 136.9 17.6 199 3-227 2-210 (245)
71 PRK06545 prephenate dehydrogen 99.7 6.8E-16 1.5E-20 139.7 20.5 195 6-225 1-212 (359)
72 PRK07502 cyclohexadienyl dehyd 99.7 1.4E-15 3E-20 135.1 22.2 171 5-193 6-192 (307)
73 PF03721 UDPG_MGDP_dh_N: UDP-g 99.7 6.2E-17 1.3E-21 132.3 10.5 153 6-167 1-185 (185)
74 TIGR01724 hmd_rel H2-forming N 99.7 3.1E-15 6.8E-20 128.6 19.5 159 6-179 1-193 (341)
75 COG1250 FadB 3-hydroxyacyl-CoA 99.7 1.5E-15 3.2E-20 131.8 15.5 252 5-304 3-285 (307)
76 PRK08269 3-hydroxybutyryl-CoA 99.7 1.3E-15 2.7E-20 134.9 13.7 186 16-228 1-220 (314)
77 TIGR01915 npdG NADPH-dependent 99.7 1.6E-15 3.4E-20 128.1 13.7 165 6-187 1-196 (219)
78 PF01210 NAD_Gly3P_dh_N: NAD-d 99.7 1.7E-16 3.6E-21 126.9 6.5 141 7-160 1-156 (157)
79 KOG2666 UDP-glucose/GDP-mannos 99.7 1.4E-14 3E-19 122.7 18.1 259 6-291 2-305 (481)
80 COG2085 Predicted dinucleotide 99.6 3E-15 6.5E-20 121.5 12.5 169 5-187 1-187 (211)
81 PLN02256 arogenate dehydrogena 99.6 2.7E-14 5.8E-19 125.7 19.1 167 4-188 35-212 (304)
82 COG0287 TyrA Prephenate dehydr 99.6 9.1E-14 2E-18 120.2 18.1 173 4-193 2-184 (279)
83 PF02737 3HCDH_N: 3-hydroxyacy 99.6 2.4E-15 5.2E-20 122.6 7.3 154 7-180 1-179 (180)
84 TIGR00745 apbA_panE 2-dehydrop 99.6 3.4E-14 7.3E-19 125.6 15.0 249 15-293 1-291 (293)
85 PLN02712 arogenate dehydrogena 99.6 2E-13 4.3E-18 131.9 20.1 165 4-187 368-544 (667)
86 PRK14806 bifunctional cyclohex 99.6 1.2E-13 2.6E-18 136.7 18.4 184 5-205 3-201 (735)
87 TIGR02440 FadJ fatty oxidation 99.6 3.4E-14 7.3E-19 138.6 14.0 190 6-224 305-520 (699)
88 PRK05479 ketol-acid reductoiso 99.6 1.7E-13 3.8E-18 120.6 15.9 196 5-219 17-224 (330)
89 PRK11154 fadJ multifunctional 99.5 7.7E-14 1.7E-18 136.4 14.5 190 6-224 310-525 (708)
90 PRK11730 fadB multifunctional 99.5 1.4E-13 2.9E-18 134.7 15.5 193 6-227 314-531 (715)
91 TIGR02437 FadB fatty oxidation 99.5 1.8E-13 3.9E-18 133.6 15.5 193 6-227 314-531 (714)
92 PLN02712 arogenate dehydrogena 99.5 5.3E-13 1.1E-17 129.0 18.3 169 5-191 52-231 (667)
93 TIGR02441 fa_ox_alpha_mit fatt 99.5 9.3E-14 2E-18 135.9 13.3 189 6-223 336-549 (737)
94 PF03807 F420_oxidored: NADP o 99.5 3E-14 6.5E-19 104.2 7.3 89 7-103 1-95 (96)
95 PRK08818 prephenate dehydrogen 99.5 2E-12 4.4E-17 116.1 17.5 161 3-192 2-167 (370)
96 TIGR00112 proC pyrroline-5-car 99.5 2.5E-12 5.5E-17 110.3 16.6 229 28-293 9-244 (245)
97 TIGR00465 ilvC ketol-acid redu 99.4 5.2E-12 1.1E-16 111.5 16.3 199 4-226 2-217 (314)
98 KOG2304 3-hydroxyacyl-CoA dehy 99.4 3.1E-12 6.7E-17 103.8 11.3 251 6-302 12-297 (298)
99 PF10727 Rossmann-like: Rossma 99.4 5.5E-13 1.2E-17 101.4 5.9 98 5-107 10-109 (127)
100 KOG3124 Pyrroline-5-carboxylat 99.4 6E-11 1.3E-15 98.5 17.3 249 6-296 1-265 (267)
101 KOG2711 Glycerol-3-phosphate d 99.3 1.1E-11 2.4E-16 106.6 10.5 286 4-311 20-366 (372)
102 KOG2305 3-hydroxyacyl-CoA dehy 99.3 2.8E-11 6.1E-16 98.3 10.0 201 5-230 3-228 (313)
103 PF02153 PDH: Prephenate dehyd 99.3 2.2E-10 4.7E-15 99.1 15.0 158 20-195 1-173 (258)
104 KOG2380 Prephenate dehydrogena 99.2 4E-10 8.7E-15 96.9 14.3 157 6-180 53-220 (480)
105 PRK07574 formate dehydrogenase 99.2 1.3E-10 2.8E-15 105.1 11.4 110 5-119 192-301 (385)
106 PLN03139 formate dehydrogenase 99.2 1.9E-10 4E-15 104.1 11.8 110 5-119 199-308 (386)
107 PRK12480 D-lactate dehydrogena 99.2 2.5E-10 5.5E-15 101.9 11.2 105 5-118 146-250 (330)
108 PRK13243 glyoxylate reductase; 99.1 3.8E-10 8.1E-15 101.0 10.5 108 5-119 150-257 (333)
109 cd01065 NAD_bind_Shikimate_DH 99.1 2.2E-10 4.9E-15 91.3 8.2 106 5-118 19-130 (155)
110 PF02826 2-Hacid_dh_C: D-isome 99.1 4.1E-10 8.9E-15 91.9 9.1 109 5-119 36-144 (178)
111 COG4007 Predicted dehydrogenas 99.1 1.1E-08 2.4E-13 84.8 17.2 199 5-219 1-234 (340)
112 PRK13403 ketol-acid reductoiso 99.1 4.9E-10 1.1E-14 97.6 9.3 74 5-81 16-89 (335)
113 PRK06436 glycerate dehydrogena 99.1 6.2E-10 1.3E-14 98.0 9.8 104 5-119 122-226 (303)
114 PRK08605 D-lactate dehydrogena 99.1 6.1E-10 1.3E-14 99.7 9.9 107 5-119 146-253 (332)
115 PRK13302 putative L-aspartate 99.0 2.6E-09 5.6E-14 92.9 10.3 106 4-119 5-115 (271)
116 PRK15469 ghrA bifunctional gly 99.0 1.8E-09 3.8E-14 95.7 8.6 108 5-119 136-243 (312)
117 PRK06444 prephenate dehydrogen 99.0 4.2E-08 9.1E-13 80.7 16.0 129 6-193 1-134 (197)
118 TIGR01327 PGDH D-3-phosphoglyc 98.9 4.5E-09 9.7E-14 99.8 9.8 110 5-120 138-247 (525)
119 PRK13581 D-3-phosphoglycerate 98.9 5.6E-09 1.2E-13 99.1 9.6 108 5-119 140-247 (526)
120 COG0111 SerA Phosphoglycerate 98.9 7.6E-09 1.7E-13 91.7 9.5 109 5-119 142-250 (324)
121 PF02558 ApbA: Ketopantoate re 98.9 2.1E-09 4.6E-14 85.3 5.2 102 8-118 1-116 (151)
122 PF07991 IlvN: Acetohydroxy ac 98.9 5.3E-09 1.1E-13 81.8 6.8 82 4-88 3-86 (165)
123 PLN02928 oxidoreductase family 98.9 1.3E-08 2.8E-13 91.5 10.0 109 5-119 159-279 (347)
124 PRK13304 L-aspartate dehydroge 98.8 2.1E-08 4.4E-13 87.1 10.3 104 6-119 2-112 (265)
125 TIGR02853 spore_dpaA dipicolin 98.8 2E-08 4.4E-13 87.9 10.3 94 5-108 151-246 (287)
126 cd01075 NAD_bind_Leu_Phe_Val_D 98.8 3.2E-08 6.9E-13 82.1 10.8 102 4-118 27-130 (200)
127 PRK00257 erythronate-4-phospha 98.8 1.4E-08 3E-13 91.9 8.8 105 5-118 116-223 (381)
128 PRK14194 bifunctional 5,10-met 98.8 1.7E-08 3.6E-13 87.8 8.7 76 4-105 158-234 (301)
129 COG1052 LdhA Lactate dehydroge 98.8 2.6E-08 5.6E-13 88.3 9.9 108 5-119 146-253 (324)
130 PF00984 UDPG_MGDP_dh: UDP-glu 98.8 1.1E-07 2.4E-12 68.8 10.7 94 182-291 2-95 (96)
131 PRK11790 D-3-phosphoglycerate 98.8 3.8E-08 8.1E-13 90.5 9.7 106 5-119 151-256 (409)
132 PRK15409 bifunctional glyoxyla 98.7 5.8E-08 1.3E-12 86.5 9.8 108 5-119 145-253 (323)
133 PRK08410 2-hydroxyacid dehydro 98.7 6.8E-08 1.5E-12 85.7 9.0 106 4-119 144-249 (311)
134 PRK06141 ornithine cyclodeamin 98.7 3.7E-08 8E-13 87.6 7.3 100 5-116 125-232 (314)
135 PRK08306 dipicolinate synthase 98.7 2.4E-07 5.1E-12 81.7 11.2 93 5-107 152-246 (296)
136 PF01408 GFO_IDH_MocA: Oxidore 98.7 4.2E-07 9.1E-12 69.0 11.0 106 6-120 1-113 (120)
137 PRK15438 erythronate-4-phospha 98.6 1.3E-07 2.8E-12 85.4 9.0 105 5-118 116-223 (378)
138 PRK14188 bifunctional 5,10-met 98.6 1.4E-07 3.1E-12 82.1 8.9 75 4-105 157-233 (296)
139 KOG0069 Glyoxylate/hydroxypyru 98.6 2E-07 4.3E-12 82.0 9.8 109 5-119 162-270 (336)
140 PRK06487 glycerate dehydrogena 98.6 2E-07 4.4E-12 82.9 9.6 103 5-119 148-250 (317)
141 PRK06932 glycerate dehydrogena 98.6 2E-07 4.3E-12 82.8 9.5 104 5-119 147-250 (314)
142 PLN02306 hydroxypyruvate reduc 98.6 3.2E-07 7E-12 83.4 10.5 109 5-118 165-288 (386)
143 PF01488 Shikimate_DH: Shikima 98.5 2.1E-07 4.5E-12 72.3 5.5 70 4-73 11-87 (135)
144 cd05213 NAD_bind_Glutamyl_tRNA 98.5 4.1E-07 8.8E-12 80.9 7.8 94 4-103 177-274 (311)
145 TIGR02371 ala_DH_arch alanine 98.5 5.3E-07 1.2E-11 80.6 8.2 91 6-107 129-227 (325)
146 TIGR00507 aroE shikimate 5-deh 98.4 1.2E-06 2.6E-11 76.4 9.3 106 5-118 117-228 (270)
147 PRK14179 bifunctional 5,10-met 98.4 9.9E-07 2.1E-11 76.3 8.2 76 4-105 157-233 (284)
148 TIGR01763 MalateDH_bact malate 98.4 1.7E-06 3.6E-11 76.7 9.5 65 6-71 2-79 (305)
149 PRK06223 malate dehydrogenase; 98.4 2.1E-06 4.5E-11 76.4 9.9 63 6-69 3-78 (307)
150 COG1748 LYS9 Saccharopine dehy 98.4 2.6E-06 5.7E-11 76.8 9.9 70 5-74 1-81 (389)
151 PTZ00075 Adenosylhomocysteinas 98.3 3.5E-06 7.6E-11 77.7 10.3 91 4-105 253-344 (476)
152 PRK13301 putative L-aspartate 98.3 4.3E-06 9.3E-11 71.2 9.4 75 4-81 1-80 (267)
153 COG1712 Predicted dinucleotide 98.3 7.8E-06 1.7E-10 67.1 10.2 103 6-116 1-108 (255)
154 PF00670 AdoHcyase_NAD: S-aden 98.3 5.4E-06 1.2E-10 65.4 8.8 93 4-106 22-114 (162)
155 PLN00203 glutamyl-tRNA reducta 98.3 2.5E-06 5.4E-11 80.4 7.8 68 5-72 266-340 (519)
156 PRK05476 S-adenosyl-L-homocyst 98.3 7.7E-06 1.7E-10 75.1 10.8 90 5-105 212-302 (425)
157 TIGR01921 DAP-DH diaminopimela 98.3 9.6E-06 2.1E-10 71.5 10.9 73 5-80 3-78 (324)
158 TIGR00936 ahcY adenosylhomocys 98.3 9.4E-06 2E-10 74.0 11.1 92 4-106 194-286 (406)
159 COG0059 IlvC Ketol-acid reduct 98.2 4.3E-06 9.2E-11 71.6 7.9 81 5-88 18-100 (338)
160 PTZ00082 L-lactate dehydrogena 98.2 4.8E-06 1E-10 74.2 8.7 68 1-69 1-82 (321)
161 PRK07340 ornithine cyclodeamin 98.2 8.4E-06 1.8E-10 72.2 9.7 92 5-108 125-223 (304)
162 PRK05225 ketol-acid reductoiso 98.2 2.3E-06 5E-11 77.8 6.0 80 5-87 36-121 (487)
163 PLN02494 adenosylhomocysteinas 98.2 1.3E-05 2.8E-10 73.9 10.8 90 4-104 253-343 (477)
164 PRK00048 dihydrodipicolinate r 98.2 9.5E-06 2.1E-10 70.2 9.2 100 6-114 2-104 (257)
165 COG0569 TrkA K+ transport syst 98.2 6.1E-06 1.3E-10 69.8 7.5 74 6-81 1-84 (225)
166 cd00401 AdoHcyase S-adenosyl-L 98.2 1.9E-05 4.2E-10 72.3 11.1 89 5-104 202-291 (413)
167 PTZ00117 malate dehydrogenase; 98.2 1.2E-05 2.6E-10 71.7 9.6 65 4-69 4-81 (319)
168 PRK06407 ornithine cyclodeamin 98.2 6.8E-06 1.5E-10 72.6 7.8 92 5-107 117-217 (301)
169 TIGR01035 hemA glutamyl-tRNA r 98.2 5E-06 1.1E-10 77.0 7.2 69 5-73 180-252 (417)
170 cd05297 GH4_alpha_glucosidase_ 98.2 3E-06 6.5E-11 78.5 5.7 67 6-72 1-85 (423)
171 cd05292 LDH_2 A subgroup of L- 98.1 8E-06 1.7E-10 72.6 8.1 67 6-72 1-78 (308)
172 PRK09310 aroDE bifunctional 3- 98.1 1.6E-05 3.5E-10 74.8 10.3 96 5-118 332-430 (477)
173 smart00859 Semialdhyde_dh Semi 98.1 6.7E-06 1.5E-10 62.6 6.0 92 7-105 1-102 (122)
174 PF01113 DapB_N: Dihydrodipico 98.1 7.8E-06 1.7E-10 62.5 6.4 99 6-114 1-111 (124)
175 PRK13303 L-aspartate dehydroge 98.1 1.9E-05 4.2E-10 68.5 9.5 68 6-73 2-73 (265)
176 PRK06823 ornithine cyclodeamin 98.1 1.8E-05 3.9E-10 70.3 9.3 91 6-107 129-227 (315)
177 cd05291 HicDH_like L-2-hydroxy 98.1 9.8E-06 2.1E-10 72.0 7.5 66 6-71 1-78 (306)
178 PRK06046 alanine dehydrogenase 98.1 1.1E-05 2.3E-10 72.4 7.7 90 6-107 130-228 (326)
179 COG0673 MviM Predicted dehydro 98.1 4.2E-05 9.2E-10 69.0 11.7 107 4-119 2-117 (342)
180 PRK13940 glutamyl-tRNA reducta 98.1 1E-05 2.3E-10 74.4 7.6 69 5-73 181-254 (414)
181 cd01339 LDH-like_MDH L-lactate 98.1 1.3E-05 2.9E-10 70.9 8.1 62 8-70 1-75 (300)
182 PRK00045 hemA glutamyl-tRNA re 98.1 8.7E-06 1.9E-10 75.6 7.2 69 5-73 182-254 (423)
183 PRK08618 ornithine cyclodeamin 98.1 2.1E-05 4.6E-10 70.4 9.2 91 5-107 127-226 (325)
184 PRK08291 ectoine utilization p 98.1 1.4E-05 3E-10 71.8 7.9 68 6-73 133-209 (330)
185 cd01080 NAD_bind_m-THF_DH_Cycl 98.1 2.8E-05 6E-10 62.5 8.8 75 4-104 43-118 (168)
186 TIGR02992 ectoine_eutC ectoine 98.0 1.7E-05 3.7E-10 71.1 8.2 67 6-72 130-205 (326)
187 COG0373 HemA Glutamyl-tRNA red 98.0 1.6E-05 3.5E-10 72.2 7.9 68 5-72 178-249 (414)
188 PF02423 OCD_Mu_crystall: Orni 98.0 1.4E-05 2.9E-10 71.2 7.3 93 6-107 129-229 (313)
189 PRK07589 ornithine cyclodeamin 98.0 2.3E-05 4.9E-10 70.3 8.5 94 6-108 130-231 (346)
190 COG5495 Uncharacterized conser 98.0 0.00052 1.1E-08 56.6 15.0 189 6-216 11-205 (289)
191 PRK02318 mannitol-1-phosphate 98.0 1.8E-05 4E-10 72.4 7.3 110 6-117 1-136 (381)
192 PRK04148 hypothetical protein; 98.0 5.6E-05 1.2E-09 57.8 8.6 68 5-73 17-89 (134)
193 PRK08300 acetaldehyde dehydrog 98.0 4.7E-05 1E-09 66.6 9.1 92 3-104 2-103 (302)
194 PF00056 Ldh_1_N: lactate/mala 98.0 1.1E-05 2.5E-10 63.0 4.9 65 6-70 1-78 (141)
195 PF01118 Semialdhyde_dh: Semia 97.9 7.3E-06 1.6E-10 62.4 3.2 89 7-105 1-100 (121)
196 COG2423 Predicted ornithine cy 97.9 6E-05 1.3E-09 66.9 9.3 92 6-108 131-231 (330)
197 PRK11579 putative oxidoreducta 97.9 0.00016 3.4E-09 65.5 12.1 104 5-119 4-114 (346)
198 cd00650 LDH_MDH_like NAD-depen 97.9 2.7E-05 5.9E-10 67.7 6.9 62 8-69 1-78 (263)
199 TIGR00036 dapB dihydrodipicoli 97.9 0.0001 2.2E-09 64.0 10.4 104 6-118 2-116 (266)
200 PF10100 DUF2338: Uncharacteri 97.9 0.0051 1.1E-07 55.3 20.8 210 6-225 2-282 (429)
201 PRK00258 aroE shikimate 5-dehy 97.9 4.1E-05 9E-10 67.0 7.8 69 5-73 123-197 (278)
202 PRK12549 shikimate 5-dehydroge 97.9 3.3E-05 7.2E-10 67.7 7.1 67 6-72 128-203 (284)
203 PRK00436 argC N-acetyl-gamma-g 97.9 3.3E-05 7.2E-10 69.6 6.9 91 5-105 2-102 (343)
204 TIGR00518 alaDH alanine dehydr 97.9 3.4E-05 7.3E-10 70.3 7.0 65 6-70 168-239 (370)
205 cd01078 NAD_bind_H4MPT_DH NADP 97.9 5.9E-05 1.3E-09 62.4 7.7 70 4-73 27-109 (194)
206 PLN02819 lysine-ketoglutarate 97.8 0.00017 3.6E-09 73.1 11.0 70 5-74 569-661 (1042)
207 PRK06199 ornithine cyclodeamin 97.8 7.7E-05 1.7E-09 68.0 7.8 67 6-72 156-234 (379)
208 cd05191 NAD_bind_amino_acid_DH 97.8 0.00019 4.1E-09 51.0 8.2 45 4-74 22-67 (86)
209 PRK00066 ldh L-lactate dehydro 97.8 7.5E-05 1.6E-09 66.5 7.5 65 5-69 6-81 (315)
210 KOG0068 D-3-phosphoglycerate d 97.8 9.6E-05 2.1E-09 64.3 7.6 106 6-118 147-252 (406)
211 TIGR01850 argC N-acetyl-gamma- 97.8 6.5E-05 1.4E-09 67.8 7.0 90 6-105 1-102 (346)
212 PRK09496 trkA potassium transp 97.8 6.8E-05 1.5E-09 70.4 7.3 68 6-73 1-77 (453)
213 COG2910 Putative NADH-flavin r 97.8 5.5E-05 1.2E-09 60.3 5.4 66 6-71 1-72 (211)
214 PRK06718 precorrin-2 dehydroge 97.7 0.00038 8.3E-09 57.8 10.4 69 5-73 10-82 (202)
215 TIGR03215 ac_ald_DH_ac acetald 97.7 0.00021 4.6E-09 62.3 9.0 69 6-74 2-77 (285)
216 TIGR01809 Shik-DH-AROM shikima 97.7 0.00013 2.9E-09 63.9 7.3 69 5-73 125-202 (282)
217 PRK14175 bifunctional 5,10-met 97.7 0.00028 6.1E-09 61.3 9.1 76 4-105 157-233 (286)
218 TIGR01761 thiaz-red thiazoliny 97.7 0.00079 1.7E-08 60.5 12.2 105 5-120 3-115 (343)
219 PRK03659 glutathione-regulated 97.6 0.00021 4.6E-09 69.3 8.8 76 5-81 400-483 (601)
220 TIGR02354 thiF_fam2 thiamine b 97.6 0.00017 3.7E-09 59.8 7.1 33 5-37 21-54 (200)
221 PRK10669 putative cation:proto 97.6 0.00031 6.8E-09 67.7 9.3 69 6-74 418-494 (558)
222 PRK06719 precorrin-2 dehydroge 97.6 0.00056 1.2E-08 54.4 9.0 67 5-73 13-82 (157)
223 PRK04207 glyceraldehyde-3-phos 97.6 0.00029 6.3E-09 63.4 8.2 69 6-74 2-91 (341)
224 PRK10206 putative oxidoreducta 97.6 0.00063 1.4E-08 61.5 10.4 105 6-119 2-114 (344)
225 PRK06349 homoserine dehydrogen 97.5 0.00033 7.1E-09 65.1 8.3 69 4-72 2-83 (426)
226 cd05211 NAD_bind_Glu_Leu_Phe_V 97.5 0.00088 1.9E-08 56.3 9.9 71 3-73 21-109 (217)
227 PRK15076 alpha-galactosidase; 97.5 0.00012 2.6E-09 67.9 5.1 67 6-72 2-86 (431)
228 cd05293 LDH_1 A subgroup of L- 97.5 0.00029 6.3E-09 62.6 7.1 64 5-69 3-79 (312)
229 PF13460 NAD_binding_10: NADH( 97.5 0.00032 6.9E-09 57.2 6.5 62 8-71 1-70 (183)
230 PF02254 TrkA_N: TrkA-N domain 97.5 0.00066 1.4E-08 50.9 7.8 67 8-74 1-75 (116)
231 cd00300 LDH_like L-lactate deh 97.5 0.00031 6.8E-09 62.2 6.9 63 8-71 1-76 (300)
232 COG4408 Uncharacterized protei 97.5 0.063 1.4E-06 47.0 21.3 214 6-226 5-285 (431)
233 cd01076 NAD_bind_1_Glu_DH NAD( 97.5 0.00091 2E-08 56.6 9.2 103 3-119 29-151 (227)
234 CHL00194 ycf39 Ycf39; Provisio 97.4 0.00045 9.8E-09 61.7 7.7 65 6-70 1-73 (317)
235 PRK14189 bifunctional 5,10-met 97.4 0.00079 1.7E-08 58.5 8.7 75 5-105 158-233 (285)
236 PRK02472 murD UDP-N-acetylmura 97.4 0.0017 3.8E-08 60.9 11.7 119 1-119 1-133 (447)
237 PF03435 Saccharop_dh: Sacchar 97.4 0.00038 8.3E-09 64.0 7.1 65 8-72 1-78 (386)
238 PRK03562 glutathione-regulated 97.4 0.00065 1.4E-08 66.2 8.8 69 6-74 401-477 (621)
239 PRK00683 murD UDP-N-acetylmura 97.4 0.00045 9.7E-09 64.3 7.2 115 5-119 3-127 (418)
240 PRK00141 murD UDP-N-acetylmura 97.4 0.0017 3.6E-08 61.4 11.1 68 5-72 15-87 (473)
241 TIGR00561 pntA NAD(P) transhyd 97.4 0.0014 3.1E-08 61.6 10.3 64 6-69 165-255 (511)
242 PRK03369 murD UDP-N-acetylmura 97.4 0.0025 5.5E-08 60.5 12.2 68 5-72 12-83 (488)
243 cd05294 LDH-like_MDH_nadp A la 97.4 0.00032 6.9E-09 62.3 5.7 64 6-70 1-81 (309)
244 PF01262 AlaDh_PNT_C: Alanine 97.4 0.00036 7.8E-09 56.3 5.4 94 5-104 20-141 (168)
245 cd05311 NAD_bind_2_malic_enz N 97.4 0.0016 3.5E-08 55.1 9.6 69 4-72 24-108 (226)
246 PLN02602 lactate dehydrogenase 97.4 0.00058 1.3E-08 61.5 7.1 63 6-69 38-113 (350)
247 PF08546 ApbA_C: Ketopantoate 97.3 0.00029 6.3E-09 53.8 4.5 83 197-291 39-123 (125)
248 PF02882 THF_DHG_CYH_C: Tetrah 97.3 0.0022 4.7E-08 51.0 9.1 76 5-106 36-112 (160)
249 PLN02968 Probable N-acetyl-gam 97.3 0.00054 1.2E-08 62.5 6.5 91 4-105 37-137 (381)
250 TIGR02356 adenyl_thiF thiazole 97.3 0.0011 2.5E-08 55.0 7.9 34 5-38 21-55 (202)
251 cd05290 LDH_3 A subgroup of L- 97.3 0.00067 1.4E-08 60.1 6.5 63 7-69 1-76 (307)
252 PF13380 CoA_binding_2: CoA bi 97.3 0.00025 5.3E-09 53.4 3.3 71 6-83 1-75 (116)
253 PRK06270 homoserine dehydrogen 97.2 0.0017 3.7E-08 58.6 9.0 69 4-72 1-100 (341)
254 cd01487 E1_ThiF_like E1_ThiF_l 97.2 0.0015 3.3E-08 53.0 7.9 32 7-38 1-33 (174)
255 PRK14106 murD UDP-N-acetylmura 97.2 0.0011 2.5E-08 62.2 8.2 69 1-69 1-76 (450)
256 PRK01710 murD UDP-N-acetylmura 97.2 0.0044 9.5E-08 58.4 11.9 64 5-68 14-84 (458)
257 PRK00961 H(2)-dependent methyl 97.2 0.018 4E-07 49.0 14.1 114 48-179 128-242 (342)
258 PRK12475 thiamine/molybdopteri 97.2 0.0014 3E-08 59.0 8.1 35 4-38 23-58 (338)
259 COG0771 MurD UDP-N-acetylmuram 97.2 0.0041 9E-08 57.5 11.3 117 4-120 6-136 (448)
260 PRK00421 murC UDP-N-acetylmura 97.2 0.0042 9.1E-08 58.5 11.7 115 6-120 8-133 (461)
261 PRK14192 bifunctional 5,10-met 97.2 0.0017 3.7E-08 56.8 8.3 75 5-105 159-234 (283)
262 PRK10792 bifunctional 5,10-met 97.2 0.0024 5.3E-08 55.5 9.1 75 5-105 159-234 (285)
263 PRK05671 aspartate-semialdehyd 97.2 0.00044 9.5E-09 62.0 4.6 88 6-105 5-100 (336)
264 TIGR01470 cysG_Nterm siroheme 97.2 0.007 1.5E-07 50.4 11.5 67 5-72 9-80 (205)
265 PRK14982 acyl-ACP reductase; P 97.2 0.0016 3.4E-08 58.3 7.8 68 4-71 154-225 (340)
266 KOG2741 Dimeric dihydrodiol de 97.1 0.0068 1.5E-07 53.4 11.2 69 6-74 7-85 (351)
267 COG0169 AroE Shikimate 5-dehyd 97.1 0.0013 2.8E-08 57.3 6.8 68 6-73 127-202 (283)
268 PF05368 NmrA: NmrA-like famil 97.1 0.0015 3.2E-08 55.6 7.1 64 8-71 1-74 (233)
269 PRK08664 aspartate-semialdehyd 97.1 0.00089 1.9E-08 60.6 5.9 90 4-104 2-109 (349)
270 PRK12548 shikimate 5-dehydroge 97.1 0.0019 4.1E-08 56.9 7.8 68 5-72 126-210 (289)
271 PRK01390 murD UDP-N-acetylmura 97.1 0.0059 1.3E-07 57.5 11.5 62 6-67 10-71 (460)
272 TIGR01723 hmd_TIGR 5,10-methen 97.1 0.032 6.9E-07 47.7 14.3 114 48-179 126-240 (340)
273 PRK05086 malate dehydrogenase; 97.1 0.0017 3.6E-08 57.8 7.2 66 6-71 1-79 (312)
274 PRK09424 pntA NAD(P) transhydr 97.1 0.0036 7.8E-08 59.1 9.5 46 5-50 165-210 (509)
275 PRK11863 N-acetyl-gamma-glutam 97.0 0.00085 1.8E-08 59.3 4.7 81 4-104 1-83 (313)
276 PRK04308 murD UDP-N-acetylmura 97.0 0.0083 1.8E-07 56.3 11.7 119 1-119 1-135 (445)
277 PRK05442 malate dehydrogenase; 97.0 0.0021 4.5E-08 57.5 7.0 66 4-69 3-88 (326)
278 COG1064 AdhP Zn-dependent alco 97.0 0.0031 6.7E-08 56.1 8.0 74 6-81 168-247 (339)
279 PRK09496 trkA potassium transp 97.0 0.0028 6E-08 59.6 8.1 69 5-73 231-309 (453)
280 PRK14027 quinate/shikimate deh 97.0 0.0025 5.3E-08 55.9 7.1 68 5-72 127-205 (283)
281 PRK14176 bifunctional 5,10-met 97.0 0.0048 1E-07 53.7 8.7 75 5-105 164-239 (287)
282 PRK14191 bifunctional 5,10-met 97.0 0.0046 1E-07 53.7 8.6 75 5-105 157-232 (285)
283 PRK00676 hemA glutamyl-tRNA re 97.0 0.0035 7.5E-08 55.9 7.9 60 5-69 174-234 (338)
284 TIGR02717 AcCoA-syn-alpha acet 96.9 0.0046 1E-07 57.9 9.1 75 2-83 4-84 (447)
285 PRK08374 homoserine dehydrogen 96.9 0.0026 5.6E-08 57.2 6.7 22 5-26 2-23 (336)
286 PRK05472 redox-sensing transcr 96.9 0.00097 2.1E-08 56.0 3.7 69 5-73 84-158 (213)
287 PRK07688 thiamine/molybdopteri 96.9 0.004 8.7E-08 56.0 7.9 40 5-44 24-64 (339)
288 PRK08644 thiamine biosynthesis 96.9 0.005 1.1E-07 51.6 7.9 33 5-37 28-61 (212)
289 PF07479 NAD_Gly3P_dh_C: NAD-d 96.9 8.4E-06 1.8E-10 64.0 -8.3 116 174-291 14-138 (149)
290 cd01338 MDH_choloroplast_like 96.9 0.0022 4.8E-08 57.2 6.0 65 5-69 2-86 (322)
291 PF00393 6PGD: 6-phosphoglucon 96.9 0.0031 6.8E-08 54.7 6.5 96 184-286 1-106 (291)
292 COG0289 DapB Dihydrodipicolina 96.8 0.017 3.7E-07 49.2 10.5 104 5-118 2-117 (266)
293 cd01483 E1_enzyme_family Super 96.8 0.013 2.8E-07 45.7 9.4 33 7-39 1-34 (143)
294 PRK14183 bifunctional 5,10-met 96.8 0.0076 1.6E-07 52.3 8.5 75 5-105 157-232 (281)
295 TIGR01759 MalateDH-SF1 malate 96.8 0.0053 1.2E-07 54.8 7.8 65 5-69 3-87 (323)
296 PTZ00325 malate dehydrogenase; 96.8 0.0025 5.4E-08 56.8 5.7 66 5-70 8-85 (321)
297 PLN00106 malate dehydrogenase 96.8 0.0044 9.5E-08 55.3 7.2 65 5-69 18-94 (323)
298 TIGR01082 murC UDP-N-acetylmur 96.8 0.01 2.2E-07 55.7 10.0 114 7-120 1-125 (448)
299 cd01337 MDH_glyoxysomal_mitoch 96.8 0.003 6.4E-08 56.0 5.8 64 6-69 1-76 (310)
300 COG0039 Mdh Malate/lactate deh 96.7 0.0028 6E-08 55.8 5.4 64 6-69 1-77 (313)
301 PF13241 NAD_binding_7: Putati 96.7 0.0039 8.4E-08 45.8 5.4 66 4-73 6-72 (103)
302 COG0002 ArgC Acetylglutamate s 96.7 0.0042 9.1E-08 54.9 6.4 92 4-105 1-104 (349)
303 PRK14573 bifunctional D-alanyl 96.7 0.013 2.8E-07 59.3 10.8 115 6-120 5-130 (809)
304 PRK03803 murD UDP-N-acetylmura 96.7 0.017 3.6E-07 54.3 11.0 114 6-119 7-133 (448)
305 cd01492 Aos1_SUMO Ubiquitin ac 96.7 0.0064 1.4E-07 50.4 7.1 34 5-38 21-55 (197)
306 cd00757 ThiF_MoeB_HesA_family 96.7 0.0033 7.2E-08 53.4 5.6 34 5-38 21-55 (228)
307 TIGR01087 murD UDP-N-acetylmur 96.7 0.012 2.5E-07 55.1 9.7 111 7-119 1-127 (433)
308 PRK05653 fabG 3-ketoacyl-(acyl 96.7 0.0064 1.4E-07 51.7 7.3 44 1-44 1-45 (246)
309 PRK12550 shikimate 5-dehydroge 96.7 0.0062 1.3E-07 53.0 7.2 65 6-72 123-189 (272)
310 PRK11861 bifunctional prephena 96.7 0.039 8.4E-07 54.6 13.6 117 65-197 1-128 (673)
311 PRK02006 murD UDP-N-acetylmura 96.7 0.0055 1.2E-07 58.4 7.5 66 6-71 8-81 (498)
312 PRK12749 quinate/shikimate deh 96.7 0.0057 1.2E-07 53.7 7.0 68 5-72 124-207 (288)
313 COG2344 AT-rich DNA-binding pr 96.6 0.0021 4.5E-08 51.5 3.5 68 6-73 85-158 (211)
314 PRK08040 putative semialdehyde 96.6 0.0023 4.9E-08 57.3 4.2 91 3-104 2-99 (336)
315 cd00704 MDH Malate dehydrogena 96.6 0.0031 6.7E-08 56.4 4.9 63 7-69 2-84 (323)
316 cd01336 MDH_cytoplasmic_cytoso 96.6 0.0038 8.2E-08 55.9 5.5 65 5-69 2-86 (325)
317 PRK14178 bifunctional 5,10-met 96.6 0.011 2.4E-07 51.3 8.0 75 5-105 152-227 (279)
318 PLN00112 malate dehydrogenase 96.6 0.0051 1.1E-07 57.0 6.2 64 6-69 101-184 (444)
319 COG1648 CysG Siroheme synthase 96.6 0.073 1.6E-06 44.4 12.5 68 5-73 12-84 (210)
320 PRK06392 homoserine dehydrogen 96.6 0.004 8.6E-08 55.6 5.3 66 6-71 1-91 (326)
321 PLN00141 Tic62-NAD(P)-related 96.6 0.0096 2.1E-07 51.2 7.6 40 5-44 17-57 (251)
322 TIGR01546 GAPDH-II_archae glyc 96.6 0.0087 1.9E-07 53.4 7.3 66 8-73 1-87 (333)
323 PF02056 Glyco_hydro_4: Family 96.5 0.004 8.7E-08 50.5 4.4 66 7-72 1-84 (183)
324 PRK05993 short chain dehydroge 96.5 0.0094 2E-07 52.0 7.1 44 4-47 3-47 (277)
325 PRK14170 bifunctional 5,10-met 96.5 0.02 4.2E-07 49.8 8.8 75 5-105 157-232 (284)
326 PRK12769 putative oxidoreducta 96.5 0.012 2.6E-07 58.0 8.5 68 5-72 327-423 (654)
327 PRK08163 salicylate hydroxylas 96.5 0.0041 8.9E-08 57.3 4.9 38 1-39 1-38 (396)
328 COG1063 Tdh Threonine dehydrog 96.4 0.018 3.9E-07 52.2 8.9 74 7-81 171-257 (350)
329 cd01079 NAD_bind_m-THF_DH NAD 96.4 0.021 4.6E-07 46.6 8.2 89 4-105 61-159 (197)
330 PRK06728 aspartate-semialdehyd 96.4 0.0046 9.9E-08 55.5 4.8 93 1-104 1-101 (347)
331 PRK12809 putative oxidoreducta 96.4 0.017 3.8E-07 56.7 9.3 68 5-72 310-406 (639)
332 PRK03806 murD UDP-N-acetylmura 96.4 0.045 9.8E-07 51.2 11.7 114 5-119 6-130 (438)
333 PF03447 NAD_binding_3: Homose 96.4 0.0073 1.6E-07 45.4 5.3 82 12-103 1-91 (117)
334 PRK01438 murD UDP-N-acetylmura 96.4 0.0096 2.1E-07 56.4 7.3 65 5-69 16-86 (480)
335 COG0460 ThrA Homoserine dehydr 96.4 0.0099 2.1E-07 52.7 6.7 69 3-71 1-88 (333)
336 PF03720 UDPG_MGDP_dh_C: UDP-g 96.4 0.0064 1.4E-07 44.9 4.7 82 16-104 18-103 (106)
337 cd05212 NAD_bind_m-THF_DH_Cycl 96.4 0.037 8.1E-07 43.0 9.1 75 5-105 28-103 (140)
338 PLN03209 translocon at the inn 96.4 0.013 2.9E-07 55.9 7.8 41 5-45 80-121 (576)
339 cd05197 GH4_glycoside_hydrolas 96.4 0.008 1.7E-07 55.7 6.2 66 6-71 1-84 (425)
340 PRK02705 murD UDP-N-acetylmura 96.4 0.024 5.3E-07 53.3 9.7 62 7-68 2-75 (459)
341 PLN02520 bifunctional 3-dehydr 96.4 0.014 2.9E-07 55.9 7.9 68 5-72 379-450 (529)
342 PRK08328 hypothetical protein; 96.4 0.014 3.1E-07 49.5 7.3 41 5-45 27-68 (231)
343 PRK14874 aspartate-semialdehyd 96.3 0.0052 1.1E-07 55.3 4.8 89 6-104 2-96 (334)
344 PRK11908 NAD-dependent epimera 96.3 0.011 2.4E-07 53.4 6.9 63 6-68 2-75 (347)
345 PRK07494 2-octaprenyl-6-methox 96.3 0.0056 1.2E-07 56.3 4.9 39 1-39 3-41 (388)
346 PRK14186 bifunctional 5,10-met 96.3 0.027 5.9E-07 49.3 8.8 75 5-105 158-233 (297)
347 PRK05690 molybdopterin biosynt 96.3 0.012 2.6E-07 50.5 6.6 35 5-39 32-67 (245)
348 PLN02383 aspartate semialdehyd 96.3 0.0074 1.6E-07 54.4 5.5 91 4-104 6-102 (344)
349 TIGR01772 MDH_euk_gproteo mala 96.3 0.0074 1.6E-07 53.6 5.4 64 7-70 1-76 (312)
350 PRK14173 bifunctional 5,10-met 96.3 0.029 6.2E-07 48.9 8.8 75 5-105 155-230 (287)
351 TIGR01318 gltD_gamma_fam gluta 96.3 0.021 4.6E-07 53.9 8.6 68 5-72 141-237 (467)
352 PRK03815 murD UDP-N-acetylmura 96.2 0.021 4.5E-07 52.8 8.3 107 6-119 1-114 (401)
353 PRK04690 murD UDP-N-acetylmura 96.2 0.042 9.1E-07 51.9 10.5 68 5-72 8-82 (468)
354 TIGR01296 asd_B aspartate-semi 96.2 0.0035 7.7E-08 56.4 3.1 87 7-103 1-93 (339)
355 PRK14169 bifunctional 5,10-met 96.2 0.031 6.8E-07 48.6 8.7 75 5-105 156-231 (282)
356 PF00070 Pyr_redox: Pyridine n 96.2 0.01 2.2E-07 41.3 4.8 33 7-39 1-33 (80)
357 PRK08762 molybdopterin biosynt 96.2 0.014 3E-07 53.5 7.0 34 5-38 135-169 (376)
358 PRK14166 bifunctional 5,10-met 96.2 0.032 6.9E-07 48.5 8.7 75 5-105 157-232 (282)
359 TIGR01757 Malate-DH_plant mala 96.2 0.012 2.6E-07 53.7 6.3 64 6-69 45-128 (387)
360 TIGR02355 moeB molybdopterin s 96.2 0.012 2.5E-07 50.4 5.9 37 5-41 24-61 (240)
361 TIGR01758 MDH_euk_cyt malate d 96.2 0.012 2.5E-07 52.7 6.1 63 7-69 1-83 (324)
362 TIGR00978 asd_EA aspartate-sem 96.2 0.0077 1.7E-07 54.4 5.1 69 6-74 1-86 (341)
363 TIGR03466 HpnA hopanoid-associ 96.2 0.0079 1.7E-07 53.6 5.1 64 6-69 1-72 (328)
364 COG0493 GltD NADPH-dependent g 96.2 0.019 4.1E-07 53.7 7.7 67 6-72 124-219 (457)
365 PF02629 CoA_binding: CoA bind 96.2 0.0016 3.4E-08 47.3 0.5 73 6-81 4-80 (96)
366 KOG1399 Flavin-containing mono 96.2 0.0061 1.3E-07 56.7 4.4 38 2-39 3-40 (448)
367 PLN02516 methylenetetrahydrofo 96.1 0.036 7.7E-07 48.6 8.7 75 5-105 167-242 (299)
368 COG0026 PurK Phosphoribosylami 96.1 0.011 2.3E-07 52.8 5.5 67 6-72 2-76 (375)
369 PRK05600 thiamine biosynthesis 96.1 0.028 6E-07 51.3 8.4 33 5-37 41-74 (370)
370 PRK14180 bifunctional 5,10-met 96.1 0.031 6.8E-07 48.6 8.3 75 5-105 158-233 (282)
371 TIGR01771 L-LDH-NAD L-lactate 96.1 0.01 2.2E-07 52.5 5.4 60 10-69 1-72 (299)
372 PRK05678 succinyl-CoA syntheta 96.1 0.037 8E-07 48.6 8.7 105 5-120 8-116 (291)
373 PRK14172 bifunctional 5,10-met 96.1 0.04 8.6E-07 47.8 8.8 75 5-105 158-233 (278)
374 PRK07236 hypothetical protein; 96.1 0.0083 1.8E-07 55.1 4.9 37 3-39 4-40 (386)
375 PRK14177 bifunctional 5,10-met 96.1 0.043 9.3E-07 47.7 8.9 75 5-105 159-234 (284)
376 PRK08223 hypothetical protein; 96.1 0.02 4.3E-07 50.0 6.8 35 5-39 27-62 (287)
377 PRK06182 short chain dehydroge 96.1 0.027 5.9E-07 48.9 7.8 42 5-46 3-45 (273)
378 PRK14171 bifunctional 5,10-met 96.1 0.035 7.5E-07 48.4 8.2 75 5-105 159-234 (288)
379 PRK06153 hypothetical protein; 96.0 0.027 5.8E-07 51.0 7.6 33 5-37 176-209 (393)
380 KOG0399 Glutamate synthase [Am 96.0 0.024 5.1E-07 57.3 7.7 66 6-71 1786-1880(2142)
381 PRK14187 bifunctional 5,10-met 96.0 0.045 9.8E-07 47.9 8.6 75 5-105 160-235 (294)
382 COG0773 MurC UDP-N-acetylmuram 96.0 0.1 2.2E-06 48.3 11.2 114 6-120 8-133 (459)
383 cd05296 GH4_P_beta_glucosidase 96.0 0.017 3.6E-07 53.5 6.4 65 6-70 1-84 (419)
384 PF13450 NAD_binding_8: NAD(P) 96.0 0.013 2.7E-07 39.5 4.1 30 10-39 1-30 (68)
385 PRK12814 putative NADPH-depend 96.0 0.024 5.2E-07 55.8 7.7 68 5-72 193-289 (652)
386 PRK06180 short chain dehydroge 96.0 0.032 6.8E-07 48.7 7.8 42 5-46 4-46 (277)
387 TIGR03649 ergot_EASG ergot alk 96.0 0.013 2.8E-07 51.4 5.4 65 7-71 1-77 (285)
388 TIGR01019 sucCoAalpha succinyl 95.9 0.051 1.1E-06 47.6 8.8 104 5-120 6-114 (286)
389 PRK08017 oxidoreductase; Provi 95.9 0.021 4.6E-07 49.0 6.5 42 5-46 2-44 (256)
390 PRK12779 putative bifunctional 95.9 0.021 4.7E-07 58.3 7.4 67 5-71 306-402 (944)
391 KOG0022 Alcohol dehydrogenase, 95.9 0.041 8.9E-07 48.0 7.9 74 6-80 194-280 (375)
392 PRK07326 short chain dehydroge 95.9 0.022 4.7E-07 48.3 6.4 40 5-44 6-46 (237)
393 PRK14182 bifunctional 5,10-met 95.9 0.046 1E-06 47.5 8.3 75 5-105 157-232 (282)
394 PRK05597 molybdopterin biosynt 95.9 0.034 7.3E-07 50.5 7.9 34 5-38 28-62 (355)
395 cd05298 GH4_GlvA_pagL_like Gly 95.9 0.02 4.3E-07 53.3 6.4 66 6-71 1-84 (437)
396 PRK14181 bifunctional 5,10-met 95.9 0.054 1.2E-06 47.2 8.7 75 5-105 153-232 (287)
397 PRK04663 murD UDP-N-acetylmura 95.9 0.065 1.4E-06 50.2 10.0 113 6-119 8-133 (438)
398 PRK12409 D-amino acid dehydrog 95.9 0.012 2.5E-07 54.6 5.0 33 6-38 2-34 (410)
399 COG4091 Predicted homoserine d 95.9 0.21 4.5E-06 44.4 12.1 148 6-180 18-185 (438)
400 COG1090 Predicted nucleoside-d 95.9 0.014 3E-07 50.0 4.8 58 12-69 6-64 (297)
401 PLN02897 tetrahydrofolate dehy 95.8 0.053 1.1E-06 48.3 8.5 75 5-105 214-289 (345)
402 COG0190 FolD 5,10-methylene-te 95.8 0.043 9.4E-07 47.3 7.6 76 5-106 156-232 (283)
403 TIGR01081 mpl UDP-N-acetylmura 95.8 0.054 1.2E-06 50.9 9.1 113 7-119 1-127 (448)
404 PF00899 ThiF: ThiF family; I 95.8 0.014 3E-07 45.1 4.3 34 5-38 2-36 (135)
405 PLN02427 UDP-apiose/xylose syn 95.8 0.025 5.4E-07 52.0 6.7 65 5-69 14-94 (386)
406 PRK14193 bifunctional 5,10-met 95.8 0.063 1.4E-06 46.7 8.7 75 5-105 158-235 (284)
407 PRK05562 precorrin-2 dehydroge 95.8 0.21 4.6E-06 41.9 11.6 67 5-72 25-96 (223)
408 PLN02477 glutamate dehydrogena 95.8 0.061 1.3E-06 49.5 9.0 101 5-119 206-326 (410)
409 PRK05866 short chain dehydroge 95.8 0.048 1E-06 48.1 8.1 42 4-45 39-81 (293)
410 PRK06753 hypothetical protein; 95.8 0.013 2.9E-07 53.4 4.7 34 6-39 1-34 (373)
411 TIGR03366 HpnZ_proposed putati 95.7 0.076 1.6E-06 46.4 9.2 45 6-50 122-167 (280)
412 PRK00711 D-amino acid dehydrog 95.7 0.015 3.2E-07 54.0 4.9 34 6-39 1-34 (416)
413 PRK09287 6-phosphogluconate de 95.7 0.081 1.8E-06 49.6 9.7 124 184-313 304-440 (459)
414 cd08230 glucose_DH Glucose deh 95.7 0.061 1.3E-06 48.8 8.8 46 5-50 173-221 (355)
415 COG0686 Ald Alanine dehydrogen 95.7 0.014 3.1E-07 50.7 4.3 92 6-103 169-269 (371)
416 PRK07060 short chain dehydroge 95.7 0.045 9.8E-07 46.5 7.5 41 6-46 10-51 (245)
417 PRK05875 short chain dehydroge 95.7 0.048 1E-06 47.4 7.7 42 3-44 5-47 (276)
418 PRK08773 2-octaprenyl-3-methyl 95.7 0.017 3.7E-07 53.1 5.0 38 1-38 1-39 (392)
419 PRK09880 L-idonate 5-dehydroge 95.6 0.1 2.3E-06 47.0 9.9 45 6-50 171-216 (343)
420 KOG1502 Flavonol reductase/cin 95.6 0.05 1.1E-06 48.1 7.4 67 4-70 5-88 (327)
421 TIGR01851 argC_other N-acetyl- 95.6 0.048 1E-06 48.1 7.2 79 6-104 2-82 (310)
422 PRK12771 putative glutamate sy 95.6 0.036 7.8E-07 53.7 7.1 67 6-72 138-233 (564)
423 PLN02616 tetrahydrofolate dehy 95.6 0.078 1.7E-06 47.5 8.5 75 5-105 231-306 (364)
424 PRK07231 fabG 3-ketoacyl-(acyl 95.6 0.037 8.1E-07 47.2 6.5 45 1-45 1-46 (251)
425 PRK08219 short chain dehydroge 95.6 0.046 9.9E-07 45.8 7.0 40 5-45 3-43 (227)
426 PRK01368 murD UDP-N-acetylmura 95.5 0.19 4.2E-06 47.2 11.6 65 6-72 7-76 (454)
427 PLN02662 cinnamyl-alcohol dehy 95.5 0.059 1.3E-06 48.0 7.9 65 5-69 4-84 (322)
428 PLN02657 3,8-divinyl protochlo 95.5 0.019 4.2E-07 52.8 4.8 36 5-40 60-96 (390)
429 PLN02695 GDP-D-mannose-3',5'-e 95.5 0.021 4.6E-07 52.2 5.0 34 5-38 21-55 (370)
430 PRK09126 hypothetical protein; 95.5 0.019 4E-07 52.8 4.6 36 3-38 1-36 (392)
431 COG1486 CelF Alpha-galactosida 95.5 0.035 7.6E-07 51.0 6.1 68 3-70 1-86 (442)
432 PRK07411 hypothetical protein; 95.5 0.038 8.1E-07 50.9 6.5 33 5-37 38-71 (390)
433 PRK07045 putative monooxygenas 95.5 0.021 4.5E-07 52.5 4.9 39 1-39 1-39 (388)
434 TIGR02360 pbenz_hydroxyl 4-hyd 95.5 0.02 4.4E-07 52.7 4.8 36 4-39 1-36 (390)
435 PRK14185 bifunctional 5,10-met 95.4 0.09 2E-06 46.0 8.3 75 5-105 157-236 (293)
436 PRK05868 hypothetical protein; 95.4 0.021 4.5E-07 52.3 4.6 34 6-39 2-35 (372)
437 PRK06598 aspartate-semialdehyd 95.4 0.02 4.3E-07 51.8 4.3 88 6-104 2-100 (369)
438 PLN02214 cinnamoyl-CoA reducta 95.4 0.061 1.3E-06 48.6 7.5 65 5-69 10-89 (342)
439 cd01486 Apg7 Apg7 is an E1-lik 95.4 0.037 8E-07 48.5 5.7 31 7-37 1-32 (307)
440 PRK05565 fabG 3-ketoacyl-(acyl 95.3 0.048 1.1E-06 46.3 6.5 44 1-44 1-46 (247)
441 PLN02686 cinnamoyl-CoA reducta 95.3 0.062 1.3E-06 49.1 7.4 42 3-44 51-93 (367)
442 PF01494 FAD_binding_3: FAD bi 95.3 0.025 5.3E-07 50.8 4.8 34 6-39 2-35 (356)
443 PRK12810 gltD glutamate syntha 95.3 0.058 1.3E-06 51.0 7.4 33 6-38 144-176 (471)
444 PRK14190 bifunctional 5,10-met 95.3 0.12 2.6E-06 45.1 8.6 75 5-105 158-233 (284)
445 PRK06185 hypothetical protein; 95.3 0.025 5.4E-07 52.3 4.8 34 5-38 6-39 (407)
446 PRK08306 dipicolinate synthase 95.3 0.055 1.2E-06 47.8 6.7 64 5-71 2-65 (296)
447 PRK07878 molybdopterin biosynt 95.3 0.031 6.8E-07 51.4 5.3 34 5-38 42-76 (392)
448 PLN02240 UDP-glucose 4-epimera 95.3 0.032 6.9E-07 50.4 5.4 37 1-37 1-38 (352)
449 TIGR03589 PseB UDP-N-acetylglu 95.3 0.067 1.5E-06 47.9 7.3 67 3-69 2-82 (324)
450 PRK07538 hypothetical protein; 95.3 0.024 5.1E-07 52.6 4.5 34 6-39 1-34 (413)
451 cd01489 Uba2_SUMO Ubiquitin ac 95.2 0.051 1.1E-06 48.2 6.3 34 7-40 1-35 (312)
452 COG0665 DadA Glycine/D-amino a 95.2 0.031 6.7E-07 51.2 5.1 36 3-38 2-37 (387)
453 PLN02896 cinnamyl-alcohol dehy 95.2 0.069 1.5E-06 48.4 7.3 40 5-44 10-50 (353)
454 PRK05732 2-octaprenyl-6-methox 95.2 0.027 5.9E-07 51.7 4.7 34 4-37 2-38 (395)
455 PRK06847 hypothetical protein; 95.2 0.03 6.5E-07 51.1 4.9 35 5-39 4-38 (375)
456 PRK14167 bifunctional 5,10-met 95.2 0.14 2.9E-06 45.0 8.6 75 5-105 157-236 (297)
457 TIGR00873 gnd 6-phosphoglucona 95.2 0.17 3.7E-06 47.6 9.9 124 184-313 312-448 (467)
458 PRK08013 oxidoreductase; Provi 95.2 0.029 6.4E-07 51.8 4.8 35 5-39 3-37 (400)
459 PRK06475 salicylate hydroxylas 95.1 0.028 6.1E-07 51.9 4.7 35 5-39 2-36 (400)
460 PRK12826 3-ketoacyl-(acyl-carr 95.1 0.054 1.2E-06 46.1 6.2 41 3-43 4-45 (251)
461 PRK07588 hypothetical protein; 95.1 0.028 6E-07 51.7 4.6 34 6-39 1-34 (391)
462 PLN02172 flavin-containing mon 95.1 0.033 7.2E-07 52.4 5.0 35 5-39 10-44 (461)
463 PRK11728 hydroxyglutarate oxid 95.1 0.031 6.7E-07 51.5 4.8 33 6-38 3-37 (393)
464 PRK07890 short chain dehydroge 95.1 0.063 1.4E-06 46.1 6.4 45 1-45 1-46 (258)
465 PRK06813 homoserine dehydrogen 95.1 0.15 3.3E-06 46.0 8.9 23 5-27 2-24 (346)
466 PLN02650 dihydroflavonol-4-red 95.1 0.11 2.3E-06 47.1 8.2 66 4-69 4-85 (351)
467 PRK09072 short chain dehydroge 95.1 0.068 1.5E-06 46.1 6.6 45 1-45 1-46 (263)
468 PRK09291 short chain dehydroge 95.1 0.081 1.8E-06 45.3 7.0 41 5-45 2-43 (257)
469 PRK07774 short chain dehydroge 95.1 0.07 1.5E-06 45.5 6.6 41 4-44 5-46 (250)
470 TIGR03219 salicylate_mono sali 95.0 0.029 6.3E-07 52.1 4.5 34 6-39 1-35 (414)
471 PRK06126 hypothetical protein; 95.0 0.033 7.1E-07 53.7 5.0 34 6-39 8-41 (545)
472 PRK09414 glutamate dehydrogena 95.0 0.12 2.5E-06 48.2 8.3 106 4-119 231-359 (445)
473 COG0499 SAM1 S-adenosylhomocys 95.0 0.075 1.6E-06 47.3 6.6 88 6-103 210-297 (420)
474 COG0451 WcaG Nucleoside-diphos 95.0 0.041 8.9E-07 48.6 5.3 38 6-43 1-39 (314)
475 PLN02989 cinnamyl-alcohol dehy 95.0 0.11 2.3E-06 46.4 7.9 39 3-41 3-42 (325)
476 COG0654 UbiH 2-polyprenyl-6-me 95.0 0.033 7.1E-07 51.2 4.6 33 5-37 2-34 (387)
477 PRK06200 2,3-dihydroxy-2,3-dih 95.0 0.072 1.6E-06 46.0 6.5 41 6-46 7-48 (263)
478 KOG1683 Hydroxyacyl-CoA dehydr 95.0 0.047 1E-06 48.6 5.2 182 16-225 1-207 (380)
479 PRK14174 bifunctional 5,10-met 95.0 0.16 3.4E-06 44.7 8.4 75 5-105 159-238 (295)
480 PLN00198 anthocyanidin reducta 95.0 0.099 2.1E-06 47.0 7.6 37 4-40 8-45 (338)
481 cd01485 E1-1_like Ubiquitin ac 94.9 0.038 8.1E-07 45.8 4.4 34 5-38 19-53 (198)
482 PRK06482 short chain dehydroge 94.9 0.1 2.2E-06 45.4 7.3 42 5-46 2-44 (276)
483 PRK11259 solA N-methyltryptoph 94.9 0.038 8.2E-07 50.4 4.8 33 6-38 4-36 (376)
484 PRK07067 sorbitol dehydrogenas 94.9 0.077 1.7E-06 45.6 6.5 42 5-46 6-48 (257)
485 PRK15181 Vi polysaccharide bio 94.9 0.064 1.4E-06 48.5 6.2 35 5-39 15-50 (348)
486 TIGR03325 BphB_TodD cis-2,3-di 94.9 0.078 1.7E-06 45.7 6.5 46 1-46 1-47 (262)
487 PRK06019 phosphoribosylaminoim 94.9 0.065 1.4E-06 49.1 6.2 62 6-67 3-69 (372)
488 PLN02986 cinnamyl-alcohol dehy 94.9 0.15 3.2E-06 45.5 8.4 65 5-69 5-85 (322)
489 PRK08243 4-hydroxybenzoate 3-m 94.9 0.039 8.5E-07 50.8 4.8 35 5-39 2-36 (392)
490 PF00743 FMO-like: Flavin-bind 94.8 0.036 7.9E-07 53.1 4.6 34 6-39 2-35 (531)
491 PRK05335 tRNA (uracil-5-)-meth 94.8 0.042 9E-07 50.8 4.7 34 5-38 2-35 (436)
492 PRK08177 short chain dehydroge 94.8 0.11 2.4E-06 43.6 7.1 40 6-45 2-42 (225)
493 PRK07825 short chain dehydroge 94.8 0.089 1.9E-06 45.7 6.6 45 1-45 1-46 (273)
494 PRK08849 2-octaprenyl-3-methyl 94.8 0.043 9.4E-07 50.4 4.9 33 6-38 4-36 (384)
495 PRK05884 short chain dehydroge 94.8 0.077 1.7E-06 44.7 6.0 40 6-45 1-41 (223)
496 PRK07364 2-octaprenyl-6-methox 94.8 0.039 8.4E-07 51.1 4.5 35 5-39 18-52 (415)
497 PRK08862 short chain dehydroge 94.7 0.089 1.9E-06 44.5 6.2 45 1-45 1-46 (227)
498 cd01484 E1-2_like Ubiquitin ac 94.7 0.12 2.7E-06 43.8 7.0 32 7-38 1-33 (234)
499 PF01266 DAO: FAD dependent ox 94.7 0.05 1.1E-06 48.8 4.9 31 7-37 1-31 (358)
500 PRK07877 hypothetical protein; 94.7 0.067 1.5E-06 52.8 6.0 32 5-37 107-140 (722)
No 1
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=5.7e-57 Score=384.94 Aligned_cols=285 Identities=41% Similarity=0.645 Sum_probs=268.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhH-HHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
+||+|||+|.||.+||++|.++||+|++|||++++ .+.+.+.|...+.++.|+++.+|+||+|||++.+ +++|+....
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~-V~~V~~g~~ 79 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAA-VRAVLFGEN 79 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHH-HHHHHhCcc
Confidence 58999999999999999999999999999999999 7777788999999999999999999999999988 999999877
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHH
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 164 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v 164 (316)
++++. ..++.++||+||++|..++++++.+...+ ..|+|+|++|++..+..|++++|+||+++.++++
T Consensus 80 g~~~~--~~~G~i~IDmSTisp~~a~~~a~~~~~~G----------~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~ 147 (286)
T COG2084 80 GLLEG--LKPGAIVIDMSTISPETARELAAALAAKG----------LEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERA 147 (286)
T ss_pred chhhc--CCCCCEEEECCCCCHHHHHHHHHHHHhcC----------CcEEecCccCCchhhhhCceEEEeCCCHHHHHHH
Confidence 88865 45788999999999999999999998743 7999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCccc
Q 021213 165 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVME 244 (316)
Q Consensus 165 ~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 244 (316)
+++|+.+|++++++|+.|+++.+|+++|.+...++.+++|++.++++.|+|++.+.++++.+...||....+.+
T Consensus 148 ~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~~~~------ 221 (286)
T COG2084 148 KPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGP------ 221 (286)
T ss_pred HHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHhhcc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999998776542
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHh
Q 021213 245 GVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYY 310 (316)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~ 310 (316)
++.+++|.++|.++.+.||++++.+.+++.|+++|+...+.++|+.+.+.|+|++|++++++.|.
T Consensus 222 -~m~~~~~~p~F~v~~~~KDl~la~~~A~~~g~~lP~~~~~~~ly~~~~~~G~g~~D~sal~~~l~ 286 (286)
T COG2084 222 -RMLEGDFSPGFAVDLMLKDLGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286 (286)
T ss_pred -hhhcCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCccChHHHHHHhC
Confidence 34578999999999999999999999999999999999999999999999999999999999763
No 2
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=100.00 E-value=4.4e-55 Score=365.32 Aligned_cols=291 Identities=49% Similarity=0.769 Sum_probs=271.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||..|+.+|.++||.|++|||+.++.+.+++.|.+.+.+|.|+.++||+||.|||++.+ +++++....
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~-v~~v~~g~~ 113 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKD-VKDVLLGKS 113 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHh-hHHHhcCCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999988 999999988
Q ss_pred CcccCCCCCCCe-EEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHH
Q 021213 85 GLLQGGNSVRPQ-LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQA 163 (316)
Q Consensus 85 ~~~~~~~~~~~~-~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~ 163 (316)
++++.. .+++ ..||+||+.|.+.+++++.+..++ ..|+|+|++|+...+..|++++++|||++.+++
T Consensus 114 Gvl~g~--~~g~~~~vDmSTidp~~s~ei~~~i~~~~----------~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~ 181 (327)
T KOG0409|consen 114 GVLSGI--RPGKKATVDMSTIDPDTSLEIAKAISNKG----------GRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEA 181 (327)
T ss_pred cceeec--cCCCceEEeccccCHHHHHHHHHHHHhCC----------CeEEeccccCCchhhhcCeEEEEecCcHHHHHH
Confidence 888752 2333 449999999999999999988743 789999999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcc
Q 021213 164 AKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVM 243 (316)
Q Consensus 164 v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 243 (316)
..++|+.+|++++++|..|.++..|+++|++.+..+.+++|++.++++.|+|+.+++++++.+ .+|+...+++.|+++
T Consensus 182 ~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G--~~~S~~~~~~~p~m~ 259 (327)
T KOG0409|consen 182 ASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTG--RCWSSMFYNPVPGML 259 (327)
T ss_pred HHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC--CcccHHHhCcCchhh
Confidence 999999999999999999999999999999999999999999999999999999999999995 456667788888877
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhcCCCC
Q 021213 244 EGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDE 315 (316)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~~~ 315 (316)
.++|.++|.+.++.||++.+.+.+++.+.++|+...+.|+|+...+.|+|+.|++++|++++..+..
T Consensus 260 -----k~dy~p~f~~~~m~KDLgla~~~a~~~~~~~P~~slA~qly~~~~a~G~g~~Dfs~V~~~~~~~~~~ 326 (327)
T KOG0409|consen 260 -----KGDYNPGFALKLMVKDLGLALNAAESVKVPMPLGSLAHQLYKSMKALGYGDKDFSAVYRAFRRLNGI 326 (327)
T ss_pred -----cCCCCCcchHHHHHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHhcCCCccccHHHHHHHHHhccC
Confidence 4689999999999999999999999999999999999999999999999999999999999876654
No 3
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=1e-49 Score=349.34 Aligned_cols=285 Identities=34% Similarity=0.521 Sum_probs=258.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNG 85 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~~ 85 (316)
|||+|||+|+||.+|+++|.++||+|++|||+++ .+.+.+.|+..+.++.+++++||+||+|+|++.+ +++++....+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~-v~~v~~~~~g 78 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQ-VEEVLFGENG 78 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHH-HHHHHcCCcc
Confidence 4899999999999999999999999999999875 5777788888889999999999999999999876 8999876555
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHHH
Q 021213 86 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 165 (316)
Q Consensus 86 ~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v~ 165 (316)
+++. ..+++++||+||+.|.+.+++.+.+...+ ..|+++|++|++..+..|++++++||+++.+++++
T Consensus 79 ~~~~--~~~g~ivvd~sT~~p~~~~~~~~~~~~~G----------~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~ 146 (292)
T PRK15059 79 CTKA--SLKGKTIVDMSSISPIETKRFARQVNELG----------GDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVK 146 (292)
T ss_pred hhcc--CCCCCEEEECCCCCHHHHHHHHHHHHHcC----------CCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHH
Confidence 5543 34678999999999999999999887643 78999999999999999999999999999999999
Q ss_pred HHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccC
Q 021213 166 PLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 245 (316)
Q Consensus 166 ~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 245 (316)
++|+.+|++++++|+.|+|+.+|+++|.+....+.+++|++.++++.|+|++++++++..+.+.||....+.+
T Consensus 147 p~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~------- 219 (292)
T PRK15059 147 PLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGE------- 219 (292)
T ss_pred HHHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCHHHHhhch-------
Confidence 9999999999999999999999999999999999999999999999999999999999887777776554332
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhc
Q 021213 246 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 311 (316)
Q Consensus 246 ~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 311 (316)
++..++|.++|++..+.||++++.+++++.|+++|+.+.+.++|+.+.+.|+|++|++++++.+.+
T Consensus 220 ~~~~~~~~~~f~l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~ 285 (292)
T PRK15059 220 RMIKRTFNPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALEL 285 (292)
T ss_pred hhhcCCCCCCCchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHH
Confidence 345678999999999999999999999999999999999999999999999999999999997754
No 4
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=100.00 E-value=2.7e-48 Score=341.92 Aligned_cols=287 Identities=31% Similarity=0.472 Sum_probs=258.7
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNG 85 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~~ 85 (316)
+||+|||+|.||.+|+.+|+++||+|++|||++++.+.+.+.|+..+.++.+++++||+||+|+|++.. ++.++....+
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~-~~~vl~~~~~ 80 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDL-VRSVLFGENG 80 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHH-HHHHHcCccc
Confidence 489999999999999999999999999999999999999999988889999999999999999999876 8889876656
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHHH
Q 021213 86 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAK 165 (316)
Q Consensus 86 ~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v~ 165 (316)
+++. ..+++++||+||+.|.+.+++.+.+.+.+ ..|+++|++|++..+..|++++++||+++.+++++
T Consensus 81 i~~~--l~~g~lvid~sT~~p~~~~~l~~~l~~~g----------~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~ 148 (296)
T PRK15461 81 VCEG--LSRDALVIDMSTIHPLQTDKLIADMQAKG----------FSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERAT 148 (296)
T ss_pred Hhhc--CCCCCEEEECCCCCHHHHHHHHHHHHHcC----------CcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHH
Confidence 5543 34678999999999999999999887643 78999999999999999999999999999999999
Q ss_pred HHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccC
Q 021213 166 PLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEG 245 (316)
Q Consensus 166 ~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 245 (316)
++|+.+|++++++|+.|+|..+|+++|.+...++.+++|++.++++.|+|++.+++++..+...++.... ..+ .
T Consensus 149 p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~--~~~----~ 222 (296)
T PRK15461 149 PILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTT--TWP----N 222 (296)
T ss_pred HHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHc--ccc----c
Confidence 9999999999999999999999999999999999999999999999999999999999887654443221 111 1
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhc
Q 021213 246 VPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 311 (316)
Q Consensus 246 ~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 311 (316)
++..++|.++|++..+.||++++.+++++.|+++|+.+.+.++|+.+.+.|+|++|++++++.+.+
T Consensus 223 ~~~~~~~~~~f~~~~~~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 288 (296)
T PRK15461 223 KVLKGDLSPAFMIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRV 288 (296)
T ss_pred hhccCCCCCCcchHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Confidence 345678999999999999999999999999999999999999999999999999999999998754
No 5
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=100.00 E-value=5.6e-48 Score=339.22 Aligned_cols=287 Identities=49% Similarity=0.815 Sum_probs=260.3
Q ss_pred EEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCCCcccC
Q 021213 10 FIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQG 89 (316)
Q Consensus 10 iiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~~~~~~ 89 (316)
|||+|.||.+|+++|.++||+|++|||++++++.+.+.|+..++++.++++++|+||+|+|++.+ +++++...+++.+.
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~-~~~v~~g~~~l~~~ 79 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQH-VISVYSGDEGILPK 79 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHH-HHHHHcCcchHhhc
Confidence 68999999999999999999999999999999999999988888999999999999999998776 88888544444432
Q ss_pred CCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHHHHHHH
Q 021213 90 GNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFL 169 (316)
Q Consensus 90 ~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v~~ll~ 169 (316)
..+++++||+||+.|.+.+++.+.+.+.+ ..|+++|++|++..+..+++++++||+++.+++++++|+
T Consensus 80 --~~~g~~vid~st~~p~~~~~~~~~~~~~g----------~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~ 147 (288)
T TIGR01692 80 --VAKGSLLIDCSTIDPDSARKLAELAAAHG----------AVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLG 147 (288)
T ss_pred --CCCCCEEEECCCCCHHHHHHHHHHHHHcC----------CcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHH
Confidence 34678999999999999999999887643 789999999999999999999999999999999999999
Q ss_pred hcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCC
Q 021213 170 SMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPAS 249 (316)
Q Consensus 170 ~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 249 (316)
.+|++++++|+.|+++.+|+++|.+.+..+.+++|++.++++.|+|++++.+++..+.+.+|....+.+.+.++...+..
T Consensus 148 ~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 227 (288)
T TIGR01692 148 PMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPAS 227 (288)
T ss_pred HhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHHHhCCCcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999888788666555555554444567
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 021213 250 RNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 309 (316)
Q Consensus 250 ~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~ 309 (316)
++|.++|++..+.||++++.+++++.|+++|+.+.+.++|+.+.+.|+|++|++++++.+
T Consensus 228 ~~~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 287 (288)
T TIGR01692 228 NGYQGGFGTALMLKDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLL 287 (288)
T ss_pred CCCCCCcchHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999999999865
No 6
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=2e-45 Score=324.98 Aligned_cols=287 Identities=36% Similarity=0.513 Sum_probs=256.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.|+|+|||+|.||..++..|++.||+|++|||++++.+.+.+.|...++++++++++||+||+|+|++.+ ++.++....
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~-~~~v~~~~~ 80 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPH-VKEVALGEN 80 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHH-HHHHHcCcc
Confidence 4689999999999999999999999999999999999999888888888999999999999999998776 788875433
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHH
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 164 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v 164 (316)
++++. ..++++++|+||+.|.+.+++.+.+...+ .+|+++|+++++..+..+++.+++|++++.++++
T Consensus 81 ~~~~~--~~~g~iiid~st~~~~~~~~l~~~~~~~g----------~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~ 148 (296)
T PRK11559 81 GIIEG--AKPGTVVIDMSSIAPLASREIAAALKAKG----------IEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKY 148 (296)
T ss_pred hHhhc--CCCCcEEEECCCCCHHHHHHHHHHHHHcC----------CcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHH
Confidence 34432 34678999999999999999998887632 7899999999999899999999999999999999
Q ss_pred HHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCccc
Q 021213 165 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVME 244 (316)
Q Consensus 165 ~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 244 (316)
+++|+.++.+++++|+.|+|+.+|+++|.+.+..+.+++|++.++++.|++++++.+.+..+.+.++....+.+ .
T Consensus 149 ~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~--~--- 223 (296)
T PRK11559 149 YDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAP--M--- 223 (296)
T ss_pred HHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhch--H---
Confidence 99999999999999999999999999999999999999999999999999999999999887766665443322 2
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhc
Q 021213 245 GVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 311 (316)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 311 (316)
+..++|.++|+++.+.||++++++++++.|+++|+.+.+.++|+.+.+.|+|++|++++++.+.+
T Consensus 224 --~~~~d~~~~f~~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 288 (296)
T PRK11559 224 --VMDRNFKPGFRIDLHIKDLANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALACYYEK 288 (296)
T ss_pred --hhcCCCCCCcchHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHH
Confidence 24578889999999999999999999999999999999999999999999999999999998765
No 7
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=100.00 E-value=4.4e-45 Score=321.78 Aligned_cols=285 Identities=38% Similarity=0.570 Sum_probs=254.7
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCCCc
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGL 86 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~~~ 86 (316)
||||||+|.||..|+..|++.||+|++|||++++.+.+.+.|...++++.+++++||+||+|+|+... ++.++....++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~-~~~v~~~~~~~ 79 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQ-VEEVAFGENGI 79 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHH-HHHHHcCcchH
Confidence 59999999999999999999999999999999999999999988888999999999999999998766 78876543333
Q ss_pred ccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHHHH
Q 021213 87 LQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKP 166 (316)
Q Consensus 87 ~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v~~ 166 (316)
++. ..+++++||+||..|.+.+++.+.+.+. +.+|+++|++|++..+..+++.+++|++++.++++++
T Consensus 80 ~~~--~~~g~iivd~st~~~~~~~~l~~~l~~~----------g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ 147 (291)
T TIGR01505 80 IEG--AKPGKTLVDMSSISPIESKRFAKAVKEK----------GIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKP 147 (291)
T ss_pred hhc--CCCCCEEEECCCCCHHHHHHHHHHHHHc----------CCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHH
Confidence 332 2466799999999999999999888763 2789999999999988899989999999999999999
Q ss_pred HHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccCC
Q 021213 167 LFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGV 246 (316)
Q Consensus 167 ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 246 (316)
+|+.++++++++|+.|.++.+|+++|.+....+.+++|++.++++.|++++++.+++..+...++....+.+ +
T Consensus 148 ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~~~~-------~ 220 (291)
T TIGR01505 148 LFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGE-------R 220 (291)
T ss_pred HHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhCh-------h
Confidence 999999999999999999999999999999999999999999999999999999999987766665443221 2
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhc
Q 021213 247 PASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 311 (316)
Q Consensus 247 ~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 311 (316)
+..++|.++|++.++.||++++.+++++.|+++|+.+++.++|+.+.+.|+|++|++++++.+.+
T Consensus 221 ~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~ 285 (291)
T TIGR01505 221 VIDRTFKPGFRIDLHQKDLNLALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQALEL 285 (291)
T ss_pred hhcCCCCCCcchHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 34678889999999999999999999999999999999999999999999999999999998865
No 8
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=1.5e-44 Score=367.96 Aligned_cols=289 Identities=23% Similarity=0.395 Sum_probs=264.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||.+||++|+++||+|++|||++++++.+.+.|+..++|+.|++++||+||+|+|++.+ +++++....
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~-v~~V~~g~~ 82 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQ-VDDVFFGDE 82 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHH-HHHHHhchh
Confidence 4689999999999999999999999999999999999999999999999999999999999999999887 999987666
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHH
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 164 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v 164 (316)
++++. ..+++++||+||+.|.+.+++++.+...+ .+..|+++|++|++..+..|++++|+||+++.++++
T Consensus 83 g~~~~--l~~g~iivd~STi~p~~~~~la~~l~~~g--------~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~ 152 (1378)
T PLN02858 83 GAAKG--LQKGAVILIRSTILPLQLQKLEKKLTERK--------EQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRA 152 (1378)
T ss_pred hHHhc--CCCcCEEEECCCCCHHHHHHHHHHHHhcC--------CceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHH
Confidence 66654 34678999999999999999999887642 015799999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEee-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcc
Q 021213 165 KPLFLSMGKNTIYC-GGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVM 243 (316)
Q Consensus 165 ~~ll~~~g~~v~~~-g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 243 (316)
+++|+.+|++++++ |+.|+|+.+|+++|.+.+.++.+++|++.++++.|++++.++++++.+.+.||....+. +.
T Consensus 153 ~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~~~--~~-- 228 (1378)
T PLN02858 153 QPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHV--PL-- 228 (1378)
T ss_pred HHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHhhh--hH--
Confidence 99999999998764 99999999999999999999999999999999999999999999999988888765432 32
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhc
Q 021213 244 EGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 311 (316)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 311 (316)
+..++|.++|++..+.||++++.+++++.|+++|+.+.+.+.|+.+.+.|+|++|++++++.+.+
T Consensus 229 ---~~~~d~~~~F~l~l~~KDl~la~~~A~~~g~~lpl~~~a~~~~~~a~~~G~g~~D~sav~~~~~~ 293 (1378)
T PLN02858 229 ---LLKDDYIEGRFLNVLVQNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEK 293 (1378)
T ss_pred ---hhcCCCCCCchhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999997754
No 9
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=8.9e-43 Score=354.95 Aligned_cols=289 Identities=27% Similarity=0.435 Sum_probs=261.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|+||.+|+.+|+++||+|++|||++++.+.+.+.|...++++.+++++||+||+|+|++.+ +++++....
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~-v~~Vl~g~~ 402 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQ-AENVLFGDL 402 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHH-HHHHHhchh
Confidence 3689999999999999999999999999999999999999999988889999999999999999998887 999987655
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHH
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 164 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v 164 (316)
++++. ..+++++||+||++|.+.+++++.+...+ +|+.|+++|++|++..+..|++++|+||+++.++++
T Consensus 403 g~~~~--l~~g~ivVd~STvsP~~~~~la~~l~~~g--------~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~ 472 (1378)
T PLN02858 403 GAVSA--LPAGASIVLSSTVSPGFVIQLERRLENEG--------RDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSA 472 (1378)
T ss_pred hHHhc--CCCCCEEEECCCCCHHHHHHHHHHHHhhC--------CCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHH
Confidence 55543 34678999999999999999998887621 137999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEe-eCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcc
Q 021213 165 KPLFLSMGKNTIY-CGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVM 243 (316)
Q Consensus 165 ~~ll~~~g~~v~~-~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 243 (316)
+++|+.+|+++++ .|+.|+|+.+|+++|.+.+.++.+++|++.++++.|+|++++++++..+.+.||....+ .+.
T Consensus 473 ~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~~~~--~~~-- 548 (1378)
T PLN02858 473 GSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENR--VPH-- 548 (1378)
T ss_pred HHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhhhhc--cch--
Confidence 9999999998887 46799999999999999999999999999999999999999999999988877765533 233
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhc
Q 021213 244 EGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 311 (316)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 311 (316)
+..++|.++|++..+.||++++.+.+++.|+++|+.+.+.++|+.+.+.|+|++|++++++.+.+
T Consensus 549 ---~l~~d~~~~f~l~l~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~G~g~~D~sav~~~~~~ 613 (1378)
T PLN02858 549 ---MLDNDYTPYSALDIFVKDLGIVSREGSSRKIPLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYET 613 (1378)
T ss_pred ---hhcCCCCCCchhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999998753
No 10
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=7.9e-42 Score=301.49 Aligned_cols=281 Identities=21% Similarity=0.309 Sum_probs=242.7
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhc---CCEEEEeCCCChhhHHHHhcC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEA---SDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~---adivi~~vp~~~~~~~~v~~~ 82 (316)
|+|||||+|+||.+|+++|.++|++|++|||++++.+.+.+.|...+.++++++++ +|+||+|+|++.+ +++++..
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~-~~~v~~~ 79 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEV-TESVIKD 79 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchH-HHHHHHH
Confidence 58999999999999999999999999999999999999988898888999998876 6999999999866 8888865
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHH
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQ 162 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~ 162 (316)
+.+.+ .+++++||+||+.|.+.+++.+.+.+.+ ..|+++|++|++..+..|+ ++++||+++.++
T Consensus 80 i~~~l-----~~g~ivid~st~~~~~~~~~~~~~~~~g----------~~~vdapV~G~~~~a~~g~-~~~~gG~~~~~~ 143 (299)
T PRK12490 80 LYPLL-----SPGDIVVDGGNSRYKDDLRRAEELAERG----------IHYVDCGTSGGVWGLRNGY-CLMVGGDKEIYD 143 (299)
T ss_pred HhccC-----CCCCEEEECCCCCchhHHHHHHHHHHcC----------CeEEeCCCCCCHHHHhcCC-eEEecCCHHHHH
Confidence 43333 2567999999999999999998887643 7899999999999999998 899999999999
Q ss_pred HHHHHHHhcCC---CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhhcc-CCccccccC
Q 021213 163 AAKPLFLSMGK---NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLG--ISASTLTKILNSSS-ARCWSSDSY 236 (316)
Q Consensus 163 ~v~~ll~~~g~---~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G--~~~~~~~~~~~~~~-~~s~~~~~~ 236 (316)
+++++|+.+|. +++|+|+.|.+..+|+++|.+.+..+.+++|++.++++.| +|+++++++++.+. ..|+.....
T Consensus 144 ~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~ 223 (299)
T PRK12490 144 RLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSWLLDLT 223 (299)
T ss_pred HHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHHHHHHH
Confidence 99999999997 7899999999999999999999999999999999999999 99999999998643 555554422
Q ss_pred CCCCCcccCCCCCCCCCCCcchhhHHHHH---HHHHHHHHHcCCCCcHHHHHH-HHHHHHHHcCCCCCcHHHHHHHHhcC
Q 021213 237 NPVPGVMEGVPASRNYGGGFASKLMAKDL---NLALASAKEVGVDCPLTSQAQ-DIYAKLCENGHDSKDFSCVFQHYYGG 312 (316)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~kd~---~~~~~~a~~~g~~~p~~~~~~-~~~~~~~~~g~g~~d~~~~~~~~~~~ 312 (316)
.+ .+ .++++ .+.++.+.||+ +++++.+++.|+++|++..+. .++....+.|.|..|.+++.+ +++.
T Consensus 224 ~~--~~-----~~~~~--~~~l~~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~-~f~~ 293 (299)
T PRK12490 224 VK--AL-----AEDPK--LAGIKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRN-QFGG 293 (299)
T ss_pred HH--HH-----hhCCC--hhhhhHHHHhcCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHH-hhCC
Confidence 21 11 12222 24678999998 799999999999999999996 899999999999999988888 5555
Q ss_pred C
Q 021213 313 K 313 (316)
Q Consensus 313 ~ 313 (316)
|
T Consensus 294 ~ 294 (299)
T PRK12490 294 H 294 (299)
T ss_pred C
Confidence 4
No 11
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=100.00 E-value=1.2e-40 Score=306.99 Aligned_cols=265 Identities=19% Similarity=0.248 Sum_probs=227.5
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC----CCC---CcCCHHHHhhc---CCEEEEeCCCChhh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----GVP---TKETPFEVAEA---SDVVITMLPSSSHQ 75 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~----g~~---~~~~~~~~~~~---adivi~~vp~~~~~ 75 (316)
++|||||+|.||.+||.+|+++||+|++|||++++++.+.+. |.. .+.|++|+++. +|+||+|+|++.+
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~a- 85 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAP- 85 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHH-
Confidence 689999999999999999999999999999999999988763 543 67899999876 9999999999988
Q ss_pred HHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEec
Q 021213 76 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG 155 (316)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~ 155 (316)
+++|+.++ ++. ..++.++||+||+.|..++++.+.+.+.+ ++|+++|++|++..+..|+ ++|+|
T Consensus 86 V~~Vi~gl---~~~--l~~G~iiID~sT~~~~~t~~~~~~l~~~G----------i~fldapVSGG~~gA~~G~-~im~G 149 (493)
T PLN02350 86 VDQTIKAL---SEY--MEPGDCIIDGGNEWYENTERRIKEAAEKG----------LLYLGMGVSGGEEGARNGP-SLMPG 149 (493)
T ss_pred HHHHHHHH---Hhh--cCCCCEEEECCCCCHHHHHHHHHHHHHcC----------CeEEeCCCcCCHHHhcCCC-eEEec
Confidence 99998543 332 23678999999999999999998887643 7999999999999999999 99999
Q ss_pred CCHHHHHHHHHHHHhcCC------CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH---Hhh
Q 021213 156 GSEDAYQAAKPLFLSMGK------NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKI---LNS 225 (316)
Q Consensus 156 ~~~~~~~~v~~ll~~~g~------~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~G~~~~~~~~~---~~~ 225 (316)
|+++++++++++|+.++. .++|+|+.|+|+.+|+++|.+.+..+++++|++.++++ .|++++++.++ ++.
T Consensus 150 G~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~ 229 (493)
T PLN02350 150 GSFEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNK 229 (493)
T ss_pred CCHHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcC
Confidence 999999999999999995 48999999999999999999999999999999999998 59999999988 556
Q ss_pred ccCCccccccCCCCCCcccCCCCCC-CCCCCcchhhHHHHHH------HHHHHHHHcCCCCcH-HHHHHHHHHHHHH
Q 021213 226 SSARCWSSDSYNPVPGVMEGVPASR-NYGGGFASKLMAKDLN------LALASAKEVGVDCPL-TSQAQDIYAKLCE 294 (316)
Q Consensus 226 ~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~kd~~------~~~~~a~~~g~~~p~-~~~~~~~~~~~~~ 294 (316)
+...|+......+ .+..+ +|.++|.++.+.||++ +..+.+.++|+++|+ ..++.+.+....+
T Consensus 230 g~~~S~llei~~~-------~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k 299 (493)
T PLN02350 230 GELESFLIEITAD-------IFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLK 299 (493)
T ss_pred CCccchHHHHHHH-------HHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccH
Confidence 6666665543322 11223 4777899999999999 899999999999999 6777666655443
No 12
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=3.1e-39 Score=285.36 Aligned_cols=280 Identities=20% Similarity=0.308 Sum_probs=235.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhc---CCEEEEeCCCChhhHHHHhcC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEA---SDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~---adivi~~vp~~~~~~~~v~~~ 82 (316)
|+|||||+|.||.+|+++|.++||+|++|||++++.+.+.+.|+..+++++++++. +|+||+|+|++.. +++++..
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~-~~~v~~~ 79 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEI-TDATIDE 79 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcH-HHHHHHH
Confidence 58999999999999999999999999999999999999999999888999998875 6999999998755 7888765
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHH
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQ 162 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~ 162 (316)
+.+.+ .++.++||+||+.|.+.+++.+.+.+.+ ..|+|+|++|++..+..|. ++++||+++.++
T Consensus 80 l~~~l-----~~g~ivid~st~~~~~~~~~~~~~~~~g----------~~~~dapvsG~~~~a~~g~-~~~~gG~~~~~~ 143 (301)
T PRK09599 80 LAPLL-----SPGDIVIDGGNSYYKDDIRRAELLAEKG----------IHFVDVGTSGGVWGLERGY-CLMIGGDKEAVE 143 (301)
T ss_pred HHhhC-----CCCCEEEeCCCCChhHHHHHHHHHHHcC----------CEEEeCCCCcCHHHHhcCC-eEEecCCHHHHH
Confidence 43333 2567999999999999999988877643 7899999999999999896 899999999999
Q ss_pred HHHHHHHhcCC----CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHhhcc-CCcccccc
Q 021213 163 AAKPLFLSMGK----NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS--LGISASTLTKILNSSS-ARCWSSDS 235 (316)
Q Consensus 163 ~v~~ll~~~g~----~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~--~G~~~~~~~~~~~~~~-~~s~~~~~ 235 (316)
+++++|+.+++ +++++|+.|+++.+|+++|.+.+..+.+++|++.++++ .|+|+++++++++.+. ..|+....
T Consensus 144 ~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~ 223 (301)
T PRK09599 144 RLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGSVIRSWLLDL 223 (301)
T ss_pred HHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHH
Confidence 99999999998 89999999999999999999999999999999999999 9999999999999764 45555443
Q ss_pred CCCCCCcccCCCCCCCCCCCcc-hhhHHHH---HHHHHHHHHHcCCCCcHHHHHH-HHHHHHHHcCCCCCcHHHHHHHHh
Q 021213 236 YNPVPGVMEGVPASRNYGGGFA-SKLMAKD---LNLALASAKEVGVDCPLTSQAQ-DIYAKLCENGHDSKDFSCVFQHYY 310 (316)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~kd---~~~~~~~a~~~g~~~p~~~~~~-~~~~~~~~~g~g~~d~~~~~~~~~ 310 (316)
..+ .+ .++ +.+. +....|| ++++++.+.+.|+++|.+.++. ..+....+.|.+..|.+++.++ +
T Consensus 224 ~~~---~~-----~~~--~~~~~~~~~~kd~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~-f 292 (301)
T PRK09599 224 TAD---AL-----AED--PKLDEISGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNG-F 292 (301)
T ss_pred HHH---HH-----hcC--CCHHHHHHHHHhhCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHh-c
Confidence 211 11 111 1222 2234455 5889999999999999999954 4588888899999999888884 5
Q ss_pred cCC
Q 021213 311 GGK 313 (316)
Q Consensus 311 ~~~ 313 (316)
+.|
T Consensus 293 g~h 295 (301)
T PRK09599 293 GGH 295 (301)
T ss_pred CCC
Confidence 554
No 13
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=100.00 E-value=9.4e-36 Score=262.53 Aligned_cols=281 Identities=22% Similarity=0.338 Sum_probs=223.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHh---hcCCEEEEeCCCChhhHHHHhcC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA---EASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~---~~adivi~~vp~~~~~~~~v~~~ 82 (316)
|+|||||+|.||.+|+.+|.++||+|.+|||++++++.+.+.|...+.++.++. +.+|+||+|+|++ . +++++.+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~-~~~v~~~ 78 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-I-VDAVLEE 78 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-H-HHHHHHH
Confidence 589999999999999999999999999999999999999998877777877754 4689999999988 4 8999876
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHH
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQ 162 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~ 162 (316)
+.+.++ +++++||++++.|..+.++.+.+.+.+ .+|+++|++|++..+..|. ++++||+++.++
T Consensus 79 l~~~l~-----~g~ivid~st~~~~~t~~~~~~~~~~g----------~~~vda~vsGg~~~a~~G~-~~~~gG~~~~~~ 142 (298)
T TIGR00872 79 LAPTLE-----KGDIVIDGGNSYYKDSLRRYKLLKEKG----------IHLLDCGTSGGVWGRERGY-CFMIGGDGEAFA 142 (298)
T ss_pred HHhhCC-----CCCEEEECCCCCcccHHHHHHHHHhcC----------CeEEecCCCCCHHHHhcCC-eeeeCCCHHHHH
Confidence 654442 567999999999888888887776542 7899999999999999994 899999999999
Q ss_pred HHHHHHHhcCC---CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHhhcc-CCccccccC
Q 021213 163 AAKPLFLSMGK---NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL--GISASTLTKILNSSS-ARCWSSDSY 236 (316)
Q Consensus 163 ~v~~ll~~~g~---~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~--G~~~~~~~~~~~~~~-~~s~~~~~~ 236 (316)
+++++|+.++. .++++|+.|+++.+|+++|.+.+..+.+++|++.++++. |+|++++.++++.+. ..||..+..
T Consensus 143 ~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~ 222 (298)
T TIGR00872 143 RAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGSVIRSWLLDLT 222 (298)
T ss_pred HHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCchhHhHHHHHH
Confidence 99999999986 589999999999999999999999999999999999998 569999999999875 466654422
Q ss_pred CCCCCcccCCCCCCCCCCCcchh-hHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcC--CCCCcHHHHHHHHhcCC
Q 021213 237 NPVPGVMEGVPASRNYGGGFASK-LMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG--HDSKDFSCVFQHYYGGK 313 (316)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~-~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g--~g~~d~~~~~~~~~~~~ 313 (316)
.. .+ .+.++.+.|... ...+|.+.++..+.+.|+|+|.+.+.. +.+..... ......-+..+.++++|
T Consensus 223 ~~---~~----~~~~~~~~~~~~~~~~~~~r~~v~~a~~~g~p~P~~~~al--~~~~~~~~~~~~~~~~~~~~r~~fg~h 293 (298)
T TIGR00872 223 AI---AF----RESPDLAEFSGRVSDSGEGRWTVIAAIDLGVPAPVIATSL--QSRFASRDLDDFANKVLAALRKEFGGH 293 (298)
T ss_pred HH---HH----hcCCcHHHHHHHHHhhccHHHHHHHHHHhCCCHHHHHHHH--HHHHHhCCCCCcHHHHHHHHHHhhCCC
Confidence 11 11 112222233322 356777899999999999999999954 33333322 22233344445566655
No 14
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=100.00 E-value=2e-34 Score=265.62 Aligned_cols=257 Identities=21% Similarity=0.282 Sum_probs=208.1
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC----C--CCCcCCHHHHhh---cCCEEEEeCCCChhhH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----G--VPTKETPFEVAE---ASDVVITMLPSSSHQV 76 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~----g--~~~~~~~~~~~~---~adivi~~vp~~~~~~ 76 (316)
.+|||||+|.||++||.+|+++||+|++|||++++++.+.+. | +..+++++++++ ++|+||+|+|++.. +
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~-v 80 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEA-V 80 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHH-H
Confidence 489999999999999999999999999999999999888764 5 346789999886 48999999988877 9
Q ss_pred HHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecC
Q 021213 77 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG 156 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~ 156 (316)
++++.++.+.+. ++.+|||++|+.+..+.+..+.+.+.+ ++|+++|++|++..+..|+ ++|+||
T Consensus 81 ~~vi~~l~~~L~-----~g~iIID~gn~~~~dt~~r~~~l~~~G----------i~fldapVSGG~~gA~~G~-~lm~GG 144 (470)
T PTZ00142 81 DETIDNLLPLLE-----KGDIIIDGGNEWYLNTERRIKRCEEKG----------ILYLGMGVSGGEEGARYGP-SLMPGG 144 (470)
T ss_pred HHHHHHHHhhCC-----CCCEEEECCCCCHHHHHHHHHHHHHcC----------CeEEcCCCCCCHHHHhcCC-EEEEeC
Confidence 999876655443 567999999999888888888776643 7999999999999999999 899999
Q ss_pred CHHHHHHHHHHHHhcCCC------eEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hhc
Q 021213 157 SEDAYQAAKPLFLSMGKN------TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ-SLGISASTLTKIL---NSS 226 (316)
Q Consensus 157 ~~~~~~~v~~ll~~~g~~------v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~-~~G~~~~~~~~~~---~~~ 226 (316)
+++++++++++|+.++.+ +.|+|+.|+|+.+|+++|.+.+..+++++|++.+++ +.|++++++.+++ +.+
T Consensus 145 ~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~~w~~g 224 (470)
T PTZ00142 145 NKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEG 224 (470)
T ss_pred CHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHcCC
Confidence 999999999999999987 789999999999999999999999999999999998 7999999998887 466
Q ss_pred cCCccccccCCCCCCcccCCCCCCCCCC-CcchhhHH------HHHHHHHHHHHHcCCCCcHHHHHH
Q 021213 227 SARCWSSDSYNPVPGVMEGVPASRNYGG-GFASKLMA------KDLNLALASAKEVGVDCPLTSQAQ 286 (316)
Q Consensus 227 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------kd~~~~~~~a~~~g~~~p~~~~~~ 286 (316)
...||....... .+. ..|-.+ +.-++.+. -+=+..++.|-++|+|+|++..+.
T Consensus 225 ~~~S~l~ei~~~---~~~----~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a~ 284 (470)
T PTZ00142 225 ILNSYLIEITAK---ILA----KKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASV 284 (470)
T ss_pred CccCHHHHHHHH---Hhh----cccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHHH
Confidence 666665432211 110 010000 01111110 111367889999999999988765
No 15
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=100.00 E-value=1.5e-33 Score=260.05 Aligned_cols=256 Identities=20% Similarity=0.289 Sum_probs=204.8
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-----CCCCcCCHHHHhh---cCCEEEEeCCCChhhHHH
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVPTKETPFEVAE---ASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-----g~~~~~~~~~~~~---~adivi~~vp~~~~~~~~ 78 (316)
+|||||+|.||.+||.+|+++||+|++|||++++++.+.+. ++..+.+++++++ .+|+||+|+|++.. +++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~-v~~ 79 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAP-VDA 79 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHH-HHH
Confidence 48999999999999999999999999999999999998875 2556778888763 68999999999777 899
Q ss_pred HhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCH
Q 021213 79 VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSE 158 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~ 158 (316)
++.++.+.+. +++++||++|+.+..+.+..+.+... |.+|+++|++|++..+..|+ ++|+||++
T Consensus 80 Vi~~l~~~L~-----~g~iIID~gns~~~~t~~~~~~l~~~----------gi~fvdapVsGG~~gA~~G~-~im~GG~~ 143 (467)
T TIGR00873 80 VINQLLPLLE-----KGDIIIDGGNSHYPDTERRYKELKAK----------GILFVGSGVSGGEEGARKGP-SIMPGGSA 143 (467)
T ss_pred HHHHHHhhCC-----CCCEEEECCCcCHHHHHHHHHHHHhc----------CCEEEcCCCCCCHHHHhcCC-cCCCCCCH
Confidence 9876544442 56799999999988777777776653 27999999999999999998 89999999
Q ss_pred HHHHHHHHHHHhcCCC------eEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hhccC
Q 021213 159 DAYQAAKPLFLSMGKN------TIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ-SLGISASTLTKIL---NSSSA 228 (316)
Q Consensus 159 ~~~~~v~~ll~~~g~~------v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~-~~G~~~~~~~~~~---~~~~~ 228 (316)
+++++++++|+.++.+ +.|+|+.|+|+.+|+++|.+.+..+++++|++.+++ +.|++++++.+++ +.+..
T Consensus 144 ~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~ 223 (467)
T TIGR00873 144 EAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGEL 223 (467)
T ss_pred HHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcc
Confidence 9999999999999876 479999999999999999999999999999999985 7999999999888 56666
Q ss_pred CccccccCCCCCCcccCCCCCCCCCCCcchhhH------HHHHHHHHHHHHHcCCCCcHHHHHH
Q 021213 229 RCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM------AKDLNLALASAKEVGVDCPLTSQAQ 286 (316)
Q Consensus 229 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~kd~~~~~~~a~~~g~~~p~~~~~~ 286 (316)
.||......+. +. .++-...+-++.+ .-+-+..+..|-++|+|+|++....
T Consensus 224 ~S~l~~~~~~~--~~-----~~d~~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~av 280 (467)
T TIGR00873 224 DSYLIEITADI--LK-----KKDEDGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESV 280 (467)
T ss_pred cchHHHhHHHH--Hh-----ccCCCCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHHHH
Confidence 66665432221 11 1110000001100 0112467889999999999987765
No 16
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=100.00 E-value=8.1e-33 Score=254.56 Aligned_cols=259 Identities=17% Similarity=0.206 Sum_probs=203.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh-------------------CC-CCCcCCHHHHhhcCCEE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-------------------MG-VPTKETPFEVAEASDVV 65 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~~adiv 65 (316)
|||+|||+|+||.++|..|+++||+|++||+++++++.+++ .| ++.++++.+++++||+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 58999999999999999999999999999999999887764 23 45667888888999999
Q ss_pred EEeCCCChh--------hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEecc
Q 021213 66 ITMLPSSSH--------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP 137 (316)
Q Consensus 66 i~~vp~~~~--------~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p 137 (316)
|+|+|++.+ ++.+++..+.+.+ .+++++|++||+.|++.+++.+.+.+.. .|. ..+.+.|
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l-----~~g~lvi~~STv~pgt~~~l~~~~~~~~----~g~---~~~~d~~ 148 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAETIAKHL-----RKGATVVLESTVPPGTTEEVVKPILERA----SGL---KLGEDFY 148 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHHHHHHHhc-----CCCCEEEEeCcCCCCchHHHHHHHHHhh----cCC---CCCCCce
Confidence 999998732 2455554443333 3567999999999999988875553320 010 0123334
Q ss_pred CCCChHhhhcCce--------EEEecCCHHHHHHHHHHHHhcC-CCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021213 138 VSGGVLAAEAGTL--------TFMVGGSEDAYQAAKPLFLSMG-KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTL 208 (316)
Q Consensus 138 ~~~~~~~~~~g~~--------~~~~~~~~~~~~~v~~ll~~~g-~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l 208 (316)
+.++|..+..|.. .+++|++++..++++++|+.++ ..++++++.+.++..|++.|.+.+..+.+++|+..+
T Consensus 149 v~~~Pe~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~l 228 (411)
T TIGR03026 149 LAYNPEFLREGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARI 228 (411)
T ss_pred EEECCCcCCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443 7888899999999999999998 578899999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCC--cchhhHHHHHHHHHHHHHHcCCCCcHHHHHH
Q 021213 209 GQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG--FASKLMAKDLNLALASAKEVGVDCPLTSQAQ 286 (316)
Q Consensus 209 ~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~ 286 (316)
|++.|+|++++.++++.+. ++..++|.+| ++..++.||+.++.+.+++.|+++|+++++.
T Consensus 229 a~~~GiD~~~v~~~~~~~~------------------~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~ 290 (411)
T TIGR03026 229 CEALGIDVYEVIEAAGTDP------------------RIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYNPELIEAAR 290 (411)
T ss_pred HHHhCCCHHHHHHHhCCCC------------------CCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCCcHHHHHHH
Confidence 9999999999999986531 1112344554 4668899999999999999999999999999
Q ss_pred HHHHHHHH
Q 021213 287 DIYAKLCE 294 (316)
Q Consensus 287 ~~~~~~~~ 294 (316)
++.+...+
T Consensus 291 ~~N~~~~~ 298 (411)
T TIGR03026 291 EINDSQPD 298 (411)
T ss_pred HHHHHhHH
Confidence 88776544
No 17
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=100.00 E-value=2.2e-32 Score=251.14 Aligned_cols=247 Identities=21% Similarity=0.267 Sum_probs=203.6
Q ss_pred hhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-----CCCCcCCHHHHhhc---CCEEEEeCCCChhhHHHHhcCCCCcc
Q 021213 16 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVPTKETPFEVAEA---SDVVITMLPSSSHQVLDVYNGPNGLL 87 (316)
Q Consensus 16 mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-----g~~~~~~~~~~~~~---adivi~~vp~~~~~~~~v~~~~~~~~ 87 (316)
||.+||.+|+++||+|.+|||++++++.+.+. |+..+.|++++++. +|+||+|+|++.. +++++.++.+.+
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~-v~~Vi~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAP-VDAVIEQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchH-HHHHHHHHHhcC
Confidence 89999999999999999999999999999874 47888999998874 8999999999988 999986544333
Q ss_pred cCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHHHHH
Q 021213 88 QGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPL 167 (316)
Q Consensus 88 ~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v~~l 167 (316)
.++.++||++|+.+..+++..+.+.+.+ ++|+++|++|++..+..|+ ++|+||+++++++++++
T Consensus 80 -----~~GdiiID~gn~~~~~t~~~~~~l~~~G----------i~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~pi 143 (459)
T PRK09287 80 -----EKGDIIIDGGNSNYKDTIRREKELAEKG----------IHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPI 143 (459)
T ss_pred -----CCCCEEEECCCCCHHHHHHHHHHHHhcC----------CeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHH
Confidence 3677999999999999999888887643 7999999999999999998 99999999999999999
Q ss_pred HHhcCCCe-------EeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hhccCCccccccC
Q 021213 168 FLSMGKNT-------IYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ-SLGISASTLTKIL---NSSSARCWSSDSY 236 (316)
Q Consensus 168 l~~~g~~v-------~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~-~~G~~~~~~~~~~---~~~~~~s~~~~~~ 236 (316)
|+.++.++ .|+|+.|+|+.+||++|.+.+..+++++|++.+++ +.|++++++.+++ +.+...||.....
T Consensus 144 L~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~l~ei~ 223 (459)
T PRK09287 144 LEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEIT 223 (459)
T ss_pred HHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccChHHHhH
Confidence 99999876 89999999999999999999999999999999999 5899999998888 4666666665433
Q ss_pred CCCCCcccCCCCCCCCCCCcc-hhhHH------HHHHHHHHHHHHcCCCCcHHHHHH
Q 021213 237 NPVPGVMEGVPASRNYGGGFA-SKLMA------KDLNLALASAKEVGVDCPLTSQAQ 286 (316)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~-~~~~~------kd~~~~~~~a~~~g~~~p~~~~~~ 286 (316)
.+ .+..+++..+.. ++.+. -+-+..+..|-++|+|+|++....
T Consensus 224 ~~-------~l~~~d~~~~~~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~Av 273 (459)
T PRK09287 224 AD-------ILRQKDEETGKPLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITEAV 273 (459)
T ss_pred hH-------HHhcCCCCCCCcchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHHHH
Confidence 22 122334422211 11110 111467889999999999887654
No 18
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.1e-31 Score=213.98 Aligned_cols=252 Identities=25% Similarity=0.407 Sum_probs=207.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhh---cCCEEEEeCCCChhhHHHHhcC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE---ASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~---~adivi~~vp~~~~~~~~v~~~ 82 (316)
|+||+||+|+||..++++|.+.||+|.+||+|++.++.+...|++.++|+.+.++ ...+|.+.||.... +.++++.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~i-t~~vi~~ 79 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDI-TDAVIDD 79 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCc-hHHHHHH
Confidence 6899999999999999999999999999999999999999999999999888764 67899999999866 8999998
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHH
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQ 162 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~ 162 (316)
+.+.++ ++.+|||-.+.......+-.+.+.++ +++|+|+..+|++..+..|. ++|+||+.++++
T Consensus 80 la~~L~-----~GDivIDGGNS~y~Ds~rr~~~l~~k----------gi~flD~GTSGG~~G~~~G~-~lMiGG~~~a~~ 143 (300)
T COG1023 80 LAPLLS-----AGDIVIDGGNSNYKDSLRRAKLLAEK----------GIHFLDVGTSGGVWGAERGY-CLMIGGDEEAVE 143 (300)
T ss_pred HHhhcC-----CCCEEEECCccchHHHHHHHHHHHhc----------CCeEEeccCCCCchhhhcCc-eEEecCcHHHHH
Confidence 887775 56699999998877666666666654 38999999999999999999 899999999999
Q ss_pred HHHHHHHhcCC---CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhhcc-CCccccccC
Q 021213 163 AAKPLFLSMGK---NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLG--ISASTLTKILNSSS-ARCWSSDSY 236 (316)
Q Consensus 163 ~v~~ll~~~g~---~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G--~~~~~~~~~~~~~~-~~s~~~~~~ 236 (316)
.++++|+.+.. -..|+|+.|+++.+||++|.+.+.+|++++|.+.+.++.. +|.+.+.++++.++ -.||..+..
T Consensus 144 ~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt 223 (300)
T COG1023 144 RLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLT 223 (300)
T ss_pred HHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHH
Confidence 99999999864 4679999999999999999999999999999999998755 57889999999987 467765421
Q ss_pred ----CCCCCc--ccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHH
Q 021213 237 ----NPVPGV--MEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQ 286 (316)
Q Consensus 237 ----~~~~~~--~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~ 286 (316)
..-+++ +.|+. -+.| +=+..++.+-++|+|.|++....
T Consensus 224 ~~Af~~d~~L~q~~g~v----~dSG--------EGrWTv~~aldlgvpaPVia~al 267 (300)
T COG1023 224 AEAFKKDPDLDQISGRV----SDSG--------EGRWTVEEALDLGVPAPVIALAL 267 (300)
T ss_pred HHHHhhCCCHHHhcCee----ccCC--------CceeehHHHHhcCCCchHHHHHH
Confidence 111111 11111 0111 00245778889999999987765
No 19
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=100.00 E-value=4e-32 Score=218.68 Aligned_cols=162 Identities=44% Similarity=0.674 Sum_probs=140.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
+|||||||+|.||.+|+++|.++||+|++|||++++.+.+.+.|++.++|+.|+++++|+||+|+|++.+ +++++.+..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~-v~~v~~~~~ 79 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDA-VEAVLFGEN 79 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHH-HHHHHHCTT
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchh-hhhhhhhhH
Confidence 3699999999999999999999999999999999999999999999999999999999999999999877 999998844
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHHHHHH
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAA 164 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v 164 (316)
+++. ..+++++||+||.+|.+.+++++.+...+ ++|+|+|++|++..+..+++++++||+++.++++
T Consensus 80 -i~~~--l~~g~iiid~sT~~p~~~~~~~~~~~~~g----------~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~ 146 (163)
T PF03446_consen 80 -ILAG--LRPGKIIIDMSTISPETSRELAERLAAKG----------VRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERV 146 (163)
T ss_dssp -HGGG--S-TTEEEEE-SS--HHHHHHHHHHHHHTT----------EEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHH
T ss_pred -Hhhc--cccceEEEecCCcchhhhhhhhhhhhhcc----------ceeeeeeeecccccccccceEEEccCCHHHHHHH
Confidence 4543 34788999999999999999999987643 7999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeE-eeCC
Q 021213 165 KPLFLSMGKNTI-YCGG 180 (316)
Q Consensus 165 ~~ll~~~g~~v~-~~g~ 180 (316)
+++|+.++.+++ ++|+
T Consensus 147 ~~~l~~~~~~v~~~~G~ 163 (163)
T PF03446_consen 147 RPLLEAMGKNVYHYVGP 163 (163)
T ss_dssp HHHHHHHEEEEEEE-ES
T ss_pred HHHHHHHhCCceeeeCc
Confidence 999999999988 4464
No 20
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.97 E-value=4.1e-31 Score=236.73 Aligned_cols=282 Identities=16% Similarity=0.174 Sum_probs=214.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC--------C------CCCcCCHHHHhhcCCEEEEeCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------G------VPTKETPFEVAEASDVVITMLP 70 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~--------g------~~~~~~~~~~~~~adivi~~vp 70 (316)
+|||+|||+|.||++++..|+++||+|++|+|++++.+.+++. | +..++++.++++++|+||+|+|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 4799999999999999999999999999999999988888764 3 3356688888899999999999
Q ss_pred CChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCC-CHHH--HHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhc
Q 021213 71 SSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTI-DPQT--SRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEA 147 (316)
Q Consensus 71 ~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~-~~~~--~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~ 147 (316)
+.. +++++..++ ++.++|+++++ .+.. .+.+++.+.+.. . .+..++..|..........
T Consensus 84 ~~~--~~~v~~~l~---------~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~---~----~~~~~~~gP~~a~~~~~~~ 145 (328)
T PRK14618 84 SKA--LRETLAGLP---------RALGYVSCAKGLAPDGGRLSELARVLEFLT---Q----ARVAVLSGPNHAEEIARFL 145 (328)
T ss_pred hHH--HHHHHHhcC---------cCCEEEEEeeccccCCCccchHHHHHHHhc---C----CCeEEEECccHHHHHHcCC
Confidence 875 788875432 34578888884 4443 556666664300 0 1145677776544444444
Q ss_pred CceEEEecCCHHHHHHHHHHHHhcCCCeEe--------eCC---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021213 148 GTLTFMVGGSEDAYQAAKPLFLSMGKNTIY--------CGG---------AGNGAAAKICNNLTMAVSMLGVSEALTLGQ 210 (316)
Q Consensus 148 g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~--------~g~---------~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~ 210 (316)
++.+++.+++.+.+++++++|+..+.+++. .+. .|.+..+|+.+|...+.+.+++.|+..+++
T Consensus 146 ~~~~~~~~~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~ 225 (328)
T PRK14618 146 PAATVVASPEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGV 225 (328)
T ss_pred CeEEEEEeCCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHH
Confidence 677888999999999999999999987762 333 488889999999999999999999999999
Q ss_pred HcCCCHHHHHHHHhhcc----CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHH
Q 021213 211 SLGISASTLTKILNSSS----ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQ 286 (316)
Q Consensus 211 ~~G~~~~~~~~~~~~~~----~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~ 286 (316)
+.|+++++++++.+.++ ..|+.+..+.....+..+.. -.++.++|.+.++.||++.+.+++++.++++|+++.++
T Consensus 226 ~~G~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~-~~~~~~~~~~~~g~kd~~~~~~la~~~~~~~Pl~~~~~ 304 (328)
T PRK14618 226 ALGAEEATFYGLSGLGDLIATATSPHSRNRAAGEAIVRGVD-REHLEAGGKVVEGLYTVKALDAWAKAHGHDLPIVEAVA 304 (328)
T ss_pred HhCCCccchhcCcchhheeeEeccCCCccHHHHHHHhCCCC-HHHHHHcCCEEecHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 99999999999987643 33333332211112222100 01245678889999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHhcC
Q 021213 287 DIYAKLCENGHDSKDFSCVFQHYYGG 312 (316)
Q Consensus 287 ~~~~~~~~~g~g~~d~~~~~~~~~~~ 312 (316)
+++ +++.|..++++.+.+.
T Consensus 305 ~~~-------~~~~~~~~~~~~~~~~ 323 (328)
T PRK14618 305 RVA-------RGGWDPLAGLRSLMGR 323 (328)
T ss_pred HHH-------hCCCCHHHHHHHHhcC
Confidence 988 6677888888887654
No 21
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.97 E-value=6.3e-29 Score=227.90 Aligned_cols=262 Identities=16% Similarity=0.167 Sum_probs=197.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCC-cCCHHHH---------------hhcCCEEEEe
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-KETPFEV---------------AEASDVVITM 68 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-~~~~~~~---------------~~~adivi~~ 68 (316)
+|||+|||+|.||.++|.+|+++||+|++||+++++++.++..+... ....++. .++||+||+|
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~ 82 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA 82 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence 37999999999999999999999999999999999999876432221 1122222 2479999999
Q ss_pred CCCC---------hhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhh-c---cCCCCCccEEe
Q 021213 69 LPSS---------SHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKE-K---KDSWENPVMLD 135 (316)
Q Consensus 69 vp~~---------~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~-~---~g~~~~~~~~~ 135 (316)
+|++ .. +.+++..+.+.+ .++++||+.||+.|++++++...+.+.+..- . .|....+.+..
T Consensus 83 vptp~~~~~~~dl~~-v~~~~~~i~~~l-----~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~ 156 (415)
T PRK11064 83 VPTPFKGDHEPDLTY-VEAAAKSIAPVL-----KKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAY 156 (415)
T ss_pred cCCCCCCCCCcChHH-HHHHHHHHHHhC-----CCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEE
Confidence 9986 23 566655444333 3578999999999999999998776532100 0 01111256788
Q ss_pred cc--CCCChHhhhcCceEEEecC-CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 021213 136 AP--VSGGVLAAEAGTLTFMVGG-SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSL 212 (316)
Q Consensus 136 ~p--~~~~~~~~~~g~~~~~~~~-~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~ 212 (316)
+| +..+........+..++|| +++.+++++++|+.++..++++++.++|+.+|+++|.+.+..+++++|+..+|++.
T Consensus 157 ~PE~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae~~ 236 (415)
T PRK11064 157 CPERVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQ 236 (415)
T ss_pred CCCccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88 4455555555555667788 99999999999999998888999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 021213 213 GISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 292 (316)
Q Consensus 213 G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~ 292 (316)
|+|++++.+.++.... . ....| .+|++..|+.||..++.+ +.+.++++++++.++.+..
T Consensus 237 GiD~~~v~~~~~~~~r---i-~~l~p--------------G~G~GG~ClpkD~~~L~~---~~~~~~~l~~~a~~~N~~~ 295 (415)
T PRK11064 237 GINVWELIRLANRHPR---V-NILQP--------------GPGVGGHCIAVDPWFIVA---QNPQQARLIRTAREVNDGK 295 (415)
T ss_pred CCCHHHHHHHhccCCC---c-ccCCC--------------CCCCCCccccccHHHHHH---hcCCccHHHHHHHHHHHHh
Confidence 9999999999865331 1 11111 345666899999987644 5677889999988876655
Q ss_pred H
Q 021213 293 C 293 (316)
Q Consensus 293 ~ 293 (316)
.
T Consensus 296 ~ 296 (415)
T PRK11064 296 P 296 (415)
T ss_pred H
Confidence 4
No 22
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.97 E-value=4.3e-29 Score=228.86 Aligned_cols=261 Identities=14% Similarity=0.171 Sum_probs=195.1
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC----------------CcCCHHHHhhcCCEEEE
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP----------------TKETPFEVAEASDVVIT 67 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~----------------~~~~~~~~~~~adivi~ 67 (316)
..|||+|||+|+||.++|.+|++ ||+|++||+++++++.++ .|.. .+++..+++++||++|+
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii 82 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYII 82 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEE
Confidence 35899999999999999999887 699999999999999998 3432 34455567889999999
Q ss_pred eCCCChh-----hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc--hhhhccCCCCCccEEecc--C
Q 021213 68 MLPSSSH-----QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC--ILKEKKDSWENPVMLDAP--V 138 (316)
Q Consensus 68 ~vp~~~~-----~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~--~~~~~~g~~~~~~~~~~p--~ 138 (316)
|||++.+ +++.++...+.+.+. ..+++++|+.||+.|++++++.+..... +. .+...+.....| +
T Consensus 83 ~Vptp~~~~~~~dl~~v~~a~~~i~~~--l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~----~~~~~~~~~~~PE~v 156 (425)
T PRK15182 83 TVPTPINTYKQPDLTPLIKASETVGTV--LNRGDIVVYESTVYPGCTEEECVPILARMSGM----TFNQDFYVGYSPERI 156 (425)
T ss_pred EcCCCCCCCCCcchHHHHHHHHHHHHh--cCCCCEEEEecCCCCcchHHHHHHHHHhccCC----CcCCCeeEeeCCCcC
Confidence 9998721 145555444444432 2357899999999999998765443322 11 000112333344 3
Q ss_pred CCChHhhhcCc-eEEEecCCHHHHHHHHHHHHhcC-CCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 021213 139 SGGVLAAEAGT-LTFMVGGSEDAYQAAKPLFLSMG-KNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 216 (316)
Q Consensus 139 ~~~~~~~~~g~-~~~~~~~~~~~~~~v~~ll~~~g-~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~ 216 (316)
..+.......+ ..++.|.+++..+.++++++.+. ..++++++.++|+..|+++|.+.+..+++++|+..+|++.|+|+
T Consensus 157 ~~G~a~~~~~~~~riv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD~ 236 (425)
T PRK15182 157 NPGDKKHRLTNIKKITSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDT 236 (425)
T ss_pred CCCcccccccCCCeEEECCCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCH
Confidence 34443333333 34666678888899999999986 34678889999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCC-cchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 021213 217 STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGG-FASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 292 (316)
Q Consensus 217 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~ 292 (316)
+++.+.+... |... .+.+| ++..|+.||...+...+++.|.++++++++.++.+..
T Consensus 237 ~~v~~a~~~~----~~~~----------------~~~pG~vGG~ClpkD~~~L~~~a~~~g~~~~l~~~a~~iN~~~ 293 (425)
T PRK15182 237 EAVLRAAGSK----WNFL----------------PFRPGLVGGHCIGVDPYYLTHKSQGIGYYPEIILAGRRLNDNM 293 (425)
T ss_pred HHHHHHhcCC----CCcc----------------cCCCCccccccccccHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 9999985432 2111 12344 6668999999999999999999999999999887654
No 23
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.97 E-value=8.2e-30 Score=228.50 Aligned_cols=282 Identities=17% Similarity=0.198 Sum_probs=206.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC--------------CCCcCCHHHHhhcCCEEEEeCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------VPTKETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g--------------~~~~~~~~~~~~~adivi~~vp~ 71 (316)
|||+|||+|.||++++..|+++||+|++|+|++++++.+++.+ +..++++.++++++|+||+|+|+
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 5899999999999999999999999999999999988887753 44566788888899999999998
Q ss_pred ChhhHHHHhcCCCCcccCCCCCCCeEEEEcC-CCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCce
Q 021213 72 SSHQVLDVYNGPNGLLQGGNSVRPQLLIDSS-TIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 150 (316)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~s-t~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~ 150 (316)
.. +++++..+.+.+. +++++|+++ +..+.+.+.+.+.+.+.... .....++..|.............
T Consensus 82 ~~--~~~v~~~l~~~~~-----~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~-----~~~~~~~~~P~~~~~~~~g~~~~ 149 (325)
T PRK00094 82 QA--LREVLKQLKPLLP-----PDAPIVWATKGIEPGTGKLLSEVLEEELPD-----LAPIAVLSGPSFAKEVARGLPTA 149 (325)
T ss_pred HH--HHHHHHHHHhhcC-----CCCEEEEEeecccCCCCCcHHHHHHHHcCC-----CCceEEEECccHHHHHHcCCCcE
Confidence 54 7888876655442 456888887 66665555666655542110 00134566676544333444455
Q ss_pred EEEecCCHHHHHHHHHHHHhcCCCeEeeCCc-----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 021213 151 TFMVGGSEDAYQAAKPLFLSMGKNTIYCGGA-----------------GNGAAAKICNNLTMAVSMLGVSEALTLGQSLG 213 (316)
Q Consensus 151 ~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~-----------------g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G 213 (316)
.++.+++.+.+++++++|+..+.++++..+. |.+..+|+.+|........+++|++.++++.|
T Consensus 150 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G 229 (325)
T PRK00094 150 VVIASTDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALG 229 (325)
T ss_pred EEEEeCCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhC
Confidence 6666778999999999999988776555442 66777889999999999999999999999999
Q ss_pred CCHHHHHHHHhhcc----CCccccccCCCCCCcccCCCCCCCC-----CCCcchhhHHHHHHHHHHHHHHcCCCCcHHHH
Q 021213 214 ISASTLTKILNSSS----ARCWSSDSYNPVPGVMEGVPASRNY-----GGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 284 (316)
Q Consensus 214 ~~~~~~~~~~~~~~----~~s~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~ 284 (316)
+|++++.++...++ ..++....+.+...+..+ ..+ ..+ .+.++.||++.++++++++|+++|++++
T Consensus 230 ~d~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~~~----~~~~~~~~~~~-~~~~~~kd~~~~~~~a~~~~~~~P~~~~ 304 (325)
T PRK00094 230 ANPETFLGLAGLGDLVLTCTSPLSRNRRFGLALGQG----KSLEEALAEIG-MVAEGVRTAKAVYELAKKLGVEMPITEA 304 (325)
T ss_pred CChhhhhcccHhhhhhhhccCCCCccHHHHHHHHCC----CCHHHHHHHcC-CEeecHHHHHHHHHHHHHhCCCCCHHHH
Confidence 99999988765542 111111111100111111 001 112 4678899999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHhc
Q 021213 285 AQDIYAKLCENGHDSKDFSCVFQHYYG 311 (316)
Q Consensus 285 ~~~~~~~~~~~g~g~~d~~~~~~~~~~ 311 (316)
+++++ +++.++..+++.+++
T Consensus 305 ~~~~~-------~~~~~~~~~~~~~~~ 324 (325)
T PRK00094 305 VYAVL-------YEGKDPREAVEDLMG 324 (325)
T ss_pred HHHHH-------cCCCCHHHHHHHHhc
Confidence 99998 667888888887754
No 24
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.97 E-value=2.6e-28 Score=221.15 Aligned_cols=251 Identities=16% Similarity=0.156 Sum_probs=188.7
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh----------------CCCCCc--CCHHHHhhcCCEEEE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD----------------MGVPTK--ETPFEVAEASDVVIT 67 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~----------------~g~~~~--~~~~~~~~~adivi~ 67 (316)
|||+|||+|+||.++|..|+. ||+|++||+++++++.+++ .+.+.+ .+..+++++||+||+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 589999999999999988775 9999999999999988876 233333 346778899999999
Q ss_pred eCCCC----------hhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEecc
Q 021213 68 MLPSS----------SHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP 137 (316)
Q Consensus 68 ~vp~~----------~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p 137 (316)
|||++ .. +++++..+.. + .+++++|+.||++|++++++.+.+...+ +. ..|
T Consensus 80 ~Vpt~~~~k~~~~dl~~-v~~v~~~i~~-~-----~~g~lVV~~STv~pgtt~~l~~~~~~~~----------v~--~~P 140 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSS-VESVIKDVVE-I-----NPYAVMVIKSTVPVGFTAAMHKKYRTEN----------II--FSP 140 (388)
T ss_pred eCCCCCccCCCCcChHH-HHHHHHHHHh-c-----CCCCEEEEeeecCCchHHHHHHHhhcCc----------EE--ECc
Confidence 99987 33 6666654432 2 2567999999999999999998765421 22 244
Q ss_pred CC---CChHhhhcCceEEEecCCHHHHHHHHHHHHh--cCCCeE-eeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021213 138 VS---GGVLAAEAGTLTFMVGGSEDAYQAAKPLFLS--MGKNTI-YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS 211 (316)
Q Consensus 138 ~~---~~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~--~g~~v~-~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~ 211 (316)
.+ |........+..+++|++++..+++.+++.. ++..+. ++++.++|+..|++.|.+.+..+++++|+..+|++
T Consensus 141 E~l~~G~a~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~ 220 (388)
T PRK15057 141 EFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAES 220 (388)
T ss_pred ccccCCcccccccCCCEEEEEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 2222222223388899888888899988854 555444 68899999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 021213 212 LGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 291 (316)
Q Consensus 212 ~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 291 (316)
.|+|.+++.+.++.... +...+..| .+||+..|+.||...+...+ .++++++++++.++.+.
T Consensus 221 ~GiD~~eV~~a~~~d~r--i~~~~l~p--------------G~G~GG~ClpkD~~~L~~~~--~~~~~~l~~~~~~~N~~ 282 (388)
T PRK15057 221 LGLNTRQIIEGVCLDPR--IGNHYNNP--------------SFGYGGYCLPKDTKQLLANY--QSVPNNLISAIVDANRT 282 (388)
T ss_pred hCcCHHHHHHHhcCCCC--CCCccCCC--------------CCCCCCcChhhhHHHHHHhc--cCCCcHHHHHHHHHHHH
Confidence 99999999999876431 11111111 34566799999999887655 56788999998887665
Q ss_pred HHH
Q 021213 292 LCE 294 (316)
Q Consensus 292 ~~~ 294 (316)
..+
T Consensus 283 ~~~ 285 (388)
T PRK15057 283 RKD 285 (388)
T ss_pred hHH
Confidence 543
No 25
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.96 E-value=1.4e-28 Score=218.23 Aligned_cols=257 Identities=17% Similarity=0.222 Sum_probs=192.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.|||+|||+|.||+++|..|.++||+|++|+|++. .++.++++++|+||+|+|+. . +++++..+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~~-~-~~~v~~~l~ 68 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSMK-G-VRPVAEQVQ 68 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECChH-H-HHHHHHHHH
Confidence 47999999999999999999999999999999853 57888889999999999985 4 888887654
Q ss_pred CcccCCCCCCCeEEEEcCC-CCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCC--CChH-----hhhcCceEEEecC
Q 021213 85 GLLQGGNSVRPQLLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS--GGVL-----AAEAGTLTFMVGG 156 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st-~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~--~~~~-----~~~~g~~~~~~~~ 156 (316)
+.. ..++.++|++++ ..|.+.+.+.+.+.. .+.+.|+. .++. .....+.++++|+
T Consensus 69 ~~~----~~~~~ivi~~s~gi~~~~~~~~s~~~~~-------------~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~ 131 (308)
T PRK14619 69 ALN----LPPETIIVTATKGLDPETTRTPSQIWQA-------------AFPNHPVVVLSGPNLSKEIQQGLPAATVVASR 131 (308)
T ss_pred Hhc----CCCCcEEEEeCCcccCCCCcCHHHHHHH-------------HcCCCceEEEECCCcHHHHhcCCCeEEEEEeC
Confidence 321 124568888886 556655656555543 22334442 2221 1223466788899
Q ss_pred CHHHHHHHHHHHHhcCCCeEeeCC-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 021213 157 SEDAYQAAKPLFLSMGKNTIYCGG-----------------AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTL 219 (316)
Q Consensus 157 ~~~~~~~v~~ll~~~g~~v~~~g~-----------------~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~ 219 (316)
+.+.+++++++|+..+.++++.++ .|.+..+|+..|.....+..++.|++.++++.|++++++
T Consensus 132 ~~~~~~~v~~ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~ 211 (308)
T PRK14619 132 DLAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETF 211 (308)
T ss_pred CHHHHHHHHHHhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 999999999999999988875555 122344458889999999999999999999999999999
Q ss_pred HHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhH----------------HHHHHHHHHHHHHcCCCCcHHH
Q 021213 220 TKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM----------------AKDLNLALASAKEVGVDCPLTS 283 (316)
Q Consensus 220 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~kd~~~~~~~a~~~g~~~p~~~ 283 (316)
+++. +.+.++... + .+..|+|..+|.+... .||++.+++++++.|+++|+++
T Consensus 212 ~~~~--g~gd~~~t~-----~-----~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~ 279 (308)
T PRK14619 212 YGLS--GLGDLLATC-----T-----SPLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITE 279 (308)
T ss_pred cccc--chhhhheee-----c-----CCCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHH
Confidence 8863 332222211 1 1224555555555444 8999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHhcC
Q 021213 284 QAQDIYAKLCENGHDSKDFSCVFQHYYGG 312 (316)
Q Consensus 284 ~~~~~~~~~~~~g~g~~d~~~~~~~~~~~ 312 (316)
++++++ +++.+...+++.+++.
T Consensus 280 ~v~~i~-------~~~~~~~~~~~~l~~~ 301 (308)
T PRK14619 280 QVYRLL-------QGEITPQQALEELMER 301 (308)
T ss_pred HHHHHH-------cCCCCHHHHHHHHHcC
Confidence 999998 5667888888887764
No 26
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.96 E-value=4.7e-28 Score=209.01 Aligned_cols=288 Identities=17% Similarity=0.229 Sum_probs=219.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC--------------CCCcCCHHHHhhcCCEEEEeCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------VPTKETPFEVAEASDVVITMLP 70 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g--------------~~~~~~~~~~~~~adivi~~vp 70 (316)
+|||+|||.|+||+++|..|+++||+|.+|.|+++.++.+++.+ +.+++|+.++++++|+|++++|
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP 80 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP 80 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC
Confidence 36999999999999999999999999999999999998887642 5677899999999999999999
Q ss_pred CChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCC-HHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCc
Q 021213 71 SSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID-PQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGT 149 (316)
Q Consensus 71 ~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~ 149 (316)
+.. +++++.++++.+. ++.++|.++.+. +.+.+.+.+.+.+.- +. ....++..|.+.........+
T Consensus 81 s~~--~r~v~~~l~~~l~-----~~~~iv~~sKGie~~t~~l~seii~e~l-----~~-~~~~vLSGPs~A~EVa~g~pt 147 (329)
T COG0240 81 SQA--LREVLRQLKPLLL-----KDAIIVSATKGLEPETGRLLSEIIEEEL-----PD-NPIAVLSGPSFAKEVAQGLPT 147 (329)
T ss_pred hHH--HHHHHHHHhhhcc-----CCCeEEEEeccccCCCcchHHHHHHHHc-----CC-CeEEEEECccHHHHHhcCCCc
Confidence 877 8999998865553 445666666654 777788888776632 10 015678888887666666677
Q ss_pred eEEEecCCHHHHHHHHHHHHhcCCCeEeeCC-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 021213 150 LTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG-----------------AGNGAAAKICNNLTMAVSMLGVSEALTLGQSL 212 (316)
Q Consensus 150 ~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~-----------------~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~ 212 (316)
.+.+.+.|++..++++.+|+.-..+++...+ .|....+.+..|+-.+.+.++++|+.+++.++
T Consensus 148 a~~vas~d~~~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~l 227 (329)
T COG0240 148 AVVVASNDQEAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVAL 227 (329)
T ss_pred EEEEecCCHHHHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHh
Confidence 6777788999999999999885554443333 15566667778888889999999999999999
Q ss_pred CCCHHHHHHHHhhcc--CCccccccCCCCCCcccCCC--CCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 021213 213 GISASTLTKILNSSS--ARCWSSDSYNPVPGVMEGVP--ASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDI 288 (316)
Q Consensus 213 G~~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~ 288 (316)
|.+|++++.+.+.++ .+|.+...|+...+.+.++- ..........+.+..+..+.+.++++++++++|+++++|++
T Consensus 228 G~~~~T~~gLsGlGDLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~Vy~v 307 (329)
T COG0240 228 GAKPETFMGLSGLGDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEAVYRV 307 (329)
T ss_pred CCCcchhcccccccceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999999999988887 35555445555544443211 11111112445678889999999999999999999999999
Q ss_pred HHHHHHcCCCCCcHHHHHHHHhcC
Q 021213 289 YAKLCENGHDSKDFSCVFQHYYGG 312 (316)
Q Consensus 289 ~~~~~~~g~g~~d~~~~~~~~~~~ 312 (316)
+. ++.+...+++.+..+
T Consensus 308 l~-------~~~~~~~~~~~L~~r 324 (329)
T COG0240 308 LY-------EGLDPKEAIEELMGR 324 (329)
T ss_pred Hh-------CCCCHHHHHHHHhcc
Confidence 84 556777777777443
No 27
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=3.2e-26 Score=200.09 Aligned_cols=261 Identities=16% Similarity=0.223 Sum_probs=204.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-------------------C-CCCcCCHHHHhhcCCEE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------------------G-VPTKETPFEVAEASDVV 65 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-------------------g-~~~~~~~~~~~~~adiv 65 (316)
|||+|||+|++|...+.+|++.||+|+++|.++++++.+++. | +.++++..++++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 799999999999999999999999999999999999888642 1 56788899999999999
Q ss_pred EEeCCCChh--------hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEecc
Q 021213 66 ITMLPSSSH--------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP 137 (316)
Q Consensus 66 i~~vp~~~~--------~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p 137 (316)
|+|||++.. +++++++.+.++++ +.+++|.-||+.+++.+.+.+.+......+ .+.++..|
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~-----~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~------~f~v~~NP 149 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILD-----GKAVVVIKSTVPVGTTEEVRAKIREENSGK------DFEVASNP 149 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcC-----CCeEEEEcCCCCCCchHHHHHHHHhhcccC------CceEecCh
Confidence 999988643 35566665555543 337999999999999999998877643211 25677888
Q ss_pred CC---CChHhhhcCceEEEecC-CHHHHHHHHHHHHhc---CCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021213 138 VS---GGVLAAEAGTLTFMVGG-SEDAYQAAKPLFLSM---GKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ 210 (316)
Q Consensus 138 ~~---~~~~~~~~g~~~~~~~~-~~~~~~~v~~ll~~~---g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~ 210 (316)
.+ |........+..+++|. ++++.+.+++++..+ ..++++++. ..++..|+..|++++.-+..++|.-.+|+
T Consensus 150 EFLREG~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~t~~-~~AE~IKyaaNafLAtKIsFiNEia~ice 228 (414)
T COG1004 150 EFLREGSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILFTDL-REAELIKYAANAFLATKISFINEIANICE 228 (414)
T ss_pred HHhcCcchhhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEEecc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 43334444445677776 444688888888775 555555555 79999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 021213 211 SLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYA 290 (316)
Q Consensus 211 ~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~ 290 (316)
+.|+|.+++.+.++...-- ...+ + +-+.||+..|+.||.++++..++++|.+.++++++.++.+
T Consensus 229 ~~g~D~~~V~~gIGlD~RI---G~~f------l-------~aG~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~avv~vN~ 292 (414)
T COG1004 229 KVGADVKQVAEGIGLDPRI---GNHF------L-------NAGFGYGGSCFPKDTKALIANAEELGYDPNLLEAVVEVNE 292 (414)
T ss_pred HhCCCHHHHHHHcCCCchh---hHhh------C-------CCCCCCCCcCCcHhHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 9999999999988764321 1111 1 1134677899999999999999999999999999998776
Q ss_pred HHHH
Q 021213 291 KLCE 294 (316)
Q Consensus 291 ~~~~ 294 (316)
.-..
T Consensus 293 ~qk~ 296 (414)
T COG1004 293 RRKD 296 (414)
T ss_pred HHHH
Confidence 5544
No 28
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.95 E-value=1.3e-25 Score=199.22 Aligned_cols=265 Identities=15% Similarity=0.147 Sum_probs=197.4
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHH-----------HhCCC-------------CCcCCHHHHhhc
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMGV-------------PTKETPFEVAEA 61 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l-----------~~~g~-------------~~~~~~~~~~~~ 61 (316)
|+|+|||+|.||++||..|+++||+|++|||+++..+.. .+.|. ..++++.+++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 589999999999999999999999999999998876543 34442 567788888999
Q ss_pred CCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCC
Q 021213 62 SDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG 141 (316)
Q Consensus 62 adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~ 141 (316)
||+||.|+|++.+..+.++..+.+.. ++.+++.+++. +....++++.+... +..+.++|+.+.
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~l~~~~------~~~~ii~ssts-~~~~~~la~~~~~~----------~~~~~~hp~~p~ 145 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAELDALA------PPHAILASSTS-ALLASAFTEHLAGR----------ERCLVAHPINPP 145 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhC------CCcceEEEeCC-CCCHHHHHHhcCCc----------ccEEEEecCCCc
Confidence 99999999987551334444333332 22355554444 33455677665432 146778888643
Q ss_pred hHhhhcCceEEEec---CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 021213 142 VLAAEAGTLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAST 218 (316)
Q Consensus 142 ~~~~~~g~~~~~~~---~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~ 218 (316)
... .+..+++ ++++.+++++++++.+|+++++++..+.+.. ++|+ ....++|++.++++.|+++++
T Consensus 146 ~~~----~lveiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~i---~nrl----~~a~~~EA~~l~~~g~~~~~~ 214 (308)
T PRK06129 146 YLI----PVVEVVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGFV---LNRL----QGALLREAFRLVADGVASVDD 214 (308)
T ss_pred ccC----ceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccHH---HHHH----HHHHHHHHHHHHHcCCCCHHH
Confidence 111 2345664 7999999999999999999999987677763 3443 346889999999999999999
Q ss_pred HHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCC
Q 021213 219 LTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHD 298 (316)
Q Consensus 219 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g 298 (316)
+.+++..+.+.+|.. ..| .. ..+.+.++|....+.||..+..+++++.+.++|++....+-+....+.-++
T Consensus 215 id~~~~~~~g~~~~~--~gp--~~-----~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (308)
T PRK06129 215 IDAVIRDGLGLRWSF--MGP--FE-----TIDLNAPGGVADYAQRYGPMYRRMAAERGQPVPWDGELVARVEAERRAALP 285 (308)
T ss_pred HHHHHHhccCCCccC--cCH--HH-----HHhccccccHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHHHHHHcC
Confidence 999999888766653 222 12 234566778888999999999999999999999999888877777777788
Q ss_pred CCcHHHHHH
Q 021213 299 SKDFSCVFQ 307 (316)
Q Consensus 299 ~~d~~~~~~ 307 (316)
..++..+.+
T Consensus 286 ~~~~~~~~~ 294 (308)
T PRK06129 286 LDQLAARQA 294 (308)
T ss_pred CCCHHHHHH
Confidence 777776655
No 29
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.93 E-value=6e-24 Score=196.45 Aligned_cols=260 Identities=15% Similarity=0.147 Sum_probs=196.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHHHHHHhCC-------------------CCCcCCHHHHhhcCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDMG-------------------VPTKETPFEVAEASD 63 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~~g-------------------~~~~~~~~~~~~~ad 63 (316)
+|||+|||+|++|..+|..|+++| |+|++||+++++++.+++.+ ...+++..+++++||
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ad 80 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEAD 80 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCC
Confidence 368999999999999999999985 88999999999998876432 335566778889999
Q ss_pred EEEEeCCCChh-------------hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCC
Q 021213 64 VVITMLPSSSH-------------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWEN 130 (316)
Q Consensus 64 ivi~~vp~~~~-------------~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~ 130 (316)
++|+|||++.. .+++++..+.+.++ ++++||..||..|++++++.+.+.+.. .| ..
T Consensus 81 vi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~-----~~~lVv~~STvp~Gtt~~~~~~l~~~~----~g--~~ 149 (473)
T PLN02353 81 IVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSK-----SDKIVVEKSTVPVKTAEAIEKILTHNS----KG--IN 149 (473)
T ss_pred EEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCC-----CCcEEEEeCCCCCChHHHHHHHHHhhC----CC--CC
Confidence 99999976541 25566665555443 567999999999999999988776531 01 12
Q ss_pred ccEEeccCC---CChHhhhcCceEEEecC-C----HHHHHHHHHHHHhcCC-CeEeeCCcchHHHHHHHHHHHHHHHHHH
Q 021213 131 PVMLDAPVS---GGVLAAEAGTLTFMVGG-S----EDAYQAAKPLFLSMGK-NTIYCGGAGNGAAAKICNNLTMAVSMLG 201 (316)
Q Consensus 131 ~~~~~~p~~---~~~~~~~~g~~~~~~~~-~----~~~~~~v~~ll~~~g~-~v~~~g~~g~a~~~k~~~n~~~~~~~~~ 201 (316)
+++...|.+ |...........+++|+ + ++..+.++++++.+-+ .++.+.+..+|+..|+..|.+.+..++.
T Consensus 150 f~v~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf 229 (473)
T PLN02353 150 FQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISS 229 (473)
T ss_pred eEEEECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHH
Confidence 567788877 43333334444666675 3 3467888999998853 3556677789999999999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCC--C
Q 021213 202 VSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVD--C 279 (316)
Q Consensus 202 ~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~--~ 279 (316)
++|...+|++.|+|..++.+.++...--++ ....| ..|++..|+.||..++...+++.|++ +
T Consensus 230 ~NEla~lce~~giD~~eV~~~~~~d~rig~--~~l~P--------------G~G~GG~ClpkD~~~L~~~a~~~g~~~~~ 293 (473)
T PLN02353 230 VNAMSALCEATGADVSQVSHAVGKDSRIGP--KFLNA--------------SVGFGGSCFQKDILNLVYICECNGLPEVA 293 (473)
T ss_pred HHHHHHHHHHhCCCHHHHHHHhCCCCcCCC--CCCCC--------------CCCCCCcchhhhHHHHHHHHHHcCCchHH
Confidence 999999999999999999998865431111 11111 23566689999999999999999998 7
Q ss_pred cHHHHHHHHHHH
Q 021213 280 PLTSQAQDIYAK 291 (316)
Q Consensus 280 p~~~~~~~~~~~ 291 (316)
++++++.++.+.
T Consensus 294 ~l~~~~~~iN~~ 305 (473)
T PLN02353 294 EYWKQVIKMNDY 305 (473)
T ss_pred HHHHHHHHHHHh
Confidence 888777765443
No 30
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=1.1e-24 Score=188.63 Aligned_cols=259 Identities=22% Similarity=0.335 Sum_probs=197.0
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-----CCCCcCCHHHHh---hcCCEEEEeCCCChh
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVPTKETPFEVA---EASDVVITMLPSSSH 74 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-----g~~~~~~~~~~~---~~adivi~~vp~~~~ 74 (316)
|+++.||+||+|.||+.+|.++.++||.|.+|||++++.+.+.+. .+..+.|++|.+ +.+.-|++.|.....
T Consensus 1 ~~~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~ 80 (473)
T COG0362 1 MMKADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTP 80 (473)
T ss_pred CCccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCc
Confidence 356789999999999999999999999999999999999988763 366788888864 578889999888765
Q ss_pred hHHHHhcCCCCcccCCCCCCCeEEEEcCCCC-HHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEE
Q 021213 75 QVLDVYNGPNGLLQGGNSVRPQLLIDSSTID-PQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFM 153 (316)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~ 153 (316)
++.++.++.+++. ++.++||..+.. ++|.++..+ +.+. |.+|+...++|+..++..|+ ++|
T Consensus 81 -VD~~I~~L~p~Le-----~gDIiIDGGNs~y~DT~RR~~e-L~~~----------Gi~FvG~GVSGGEeGA~~GP-SiM 142 (473)
T COG0362 81 -VDAVIEQLLPLLE-----KGDIIIDGGNSHYKDTIRRNKE-LSEK----------GILFVGMGVSGGEEGARHGP-SIM 142 (473)
T ss_pred -HHHHHHHHHhhcC-----CCCEEEeCCCcCCchHHHHHHH-HHhc----------CCeEEeccccccccccccCC-CcC
Confidence 8888888888875 566999998877 556555544 4443 37999999999999999999 899
Q ss_pred ecCCHHHHHHHHHHHHhcCC------CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh--
Q 021213 154 VGGSEDAYQAAKPLFLSMGK------NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKILN-- 224 (316)
Q Consensus 154 ~~~~~~~~~~v~~ll~~~g~------~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~G~~~~~~~~~~~-- 224 (316)
.||++++++.++++|+.+.. .+.++|+-|+++.+|+++|.+.+.=|++++|++.+.+. .|++.+++.++..
T Consensus 143 pGG~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~W 222 (473)
T COG0362 143 PGGQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEW 222 (473)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 99999999999999999853 35689999999999999999999999999999999986 8999888766654
Q ss_pred -hccCCccccccCCCCCCcccCCCCCCCCCCCcch-hhHHHHH------HHHHHHHHHcCCCCcHHHHHH
Q 021213 225 -SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFAS-KLMAKDL------NLALASAKEVGVDCPLTSQAQ 286 (316)
Q Consensus 225 -~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~kd~------~~~~~~a~~~g~~~p~~~~~~ 286 (316)
.+...|+.-.... +++ ...|-..+..+ +.++... +.....|.+.|+|+|++....
T Consensus 223 N~geL~SYLIeIT~---~IL----~~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~eaV 285 (473)
T COG0362 223 NKGELDSYLIEITA---DIL----RKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAV 285 (473)
T ss_pred ccCcchHHHHHHHH---HHH----hhcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHHH
Confidence 3333333211100 011 11111112111 1111111 355778899999999876654
No 31
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.92 E-value=5.9e-24 Score=191.77 Aligned_cols=264 Identities=17% Similarity=0.194 Sum_probs=174.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCC-----------------cCCHHHHhhcCCEEEE
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-----------------KETPFEVAEASDVVIT 67 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-----------------~~~~~~~~~~adivi~ 67 (316)
+|||+|||+|.||+.+|..|+++||+|++|+|++ ..+.+++.|... +++. +.++.+|+||+
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil 79 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR-IGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLV 79 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH-HHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEE
Confidence 4689999999999999999999999999999975 346666655321 2344 56689999999
Q ss_pred eCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCCh---Hh
Q 021213 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGV---LA 144 (316)
Q Consensus 68 ~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~---~~ 144 (316)
|+|+.. +.+++..+.+.+. ++++++++++ .....+.+.+.++...+ .. +..+..+ +..++ ..
T Consensus 80 ~vk~~~--~~~~~~~l~~~~~-----~~~iii~~~n-G~~~~~~l~~~~~~~~~--~~----g~~~~~~-~~~~pg~~~~ 144 (341)
T PRK08229 80 TVKSAA--TADAAAALAGHAR-----PGAVVVSFQN-GVRNADVLRAALPGATV--LA----GMVPFNV-ISRGPGAFHQ 144 (341)
T ss_pred EecCcc--hHHHHHHHHhhCC-----CCCEEEEeCC-CCCcHHHHHHhCCCCcE--EE----EEEEEEE-EecCCceEEe
Confidence 999875 6777766655442 4457776654 44444566666543210 00 0111111 12111 11
Q ss_pred hhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHH--------------------HHHHHH
Q 021213 145 AEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVS--------------------MLGVSE 204 (316)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~--------------------~~~~~E 204 (316)
...+.+. ++ +.+.++++.++|+..+.++.+.++++...|.|++.|.+.... ..++.|
T Consensus 145 ~~~g~l~--~~-~~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E 221 (341)
T PRK08229 145 GTSGALA--IE-ASPALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQRE 221 (341)
T ss_pred cCCCceE--ec-CCchHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHH
Confidence 2234433 33 235578999999999999999999999999999999643322 377899
Q ss_pred HHHHHHHcCCCHHHHHHHHhhcc-----CCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHH------------H
Q 021213 205 ALTLGQSLGISASTLTKILNSSS-----ARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLN------------L 267 (316)
Q Consensus 205 a~~l~~~~G~~~~~~~~~~~~~~-----~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~------------~ 267 (316)
++.++++.|++++.+..+...+. ..++... .. ...+...++.. ...+.+|+. .
T Consensus 222 ~~~va~a~Gi~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~---~~Sm~~D~~~~r~tEi~~i~G~ 291 (341)
T PRK08229 222 ALRVLKAAGIRPARLTPLPPAWIPRLLRLPDPLFR---RL----AGRMLAIDPLA---RSSMSDDLAAGRATEIDWINGE 291 (341)
T ss_pred HHHHHHHcCCCccccCCCChhhhhhhhcCChHHHH---HH----HHHhhccCCcc---CchHHHHHHcCCcchHHHHhhH
Confidence 99999999999766543322211 0000000 00 00011112211 256888887 6
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHHHcCCC
Q 021213 268 ALASAKEVGVDCPLTSQAQDIYAKLCENGHD 298 (316)
Q Consensus 268 ~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g 298 (316)
+++.++++|+++|+++.++++++...+.|..
T Consensus 292 i~~~a~~~gv~~P~~~~~~~~~~~~~~~~~~ 322 (341)
T PRK08229 292 IVRLAGRLGAPAPVNARLCALVHEAERAGAR 322 (341)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999887653
No 32
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=1.3e-23 Score=183.01 Aligned_cols=257 Identities=21% Similarity=0.286 Sum_probs=187.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-------------------C-CCCcCCHHHHhhcCCE
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------------------G-VPTKETPFEVAEASDV 64 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-------------------g-~~~~~~~~~~~~~adi 64 (316)
+++|+|||+|++|.++|..++++|++|+++|.|+.+++.++.. | .+.++++.++ +.||+
T Consensus 9 ~~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l-~~~dv 87 (436)
T COG0677 9 SATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL-KECDV 87 (436)
T ss_pred ceEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc-ccCCE
Confidence 3799999999999999999999999999999999988877642 2 5556666665 58999
Q ss_pred EEEeCCCChh--------hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCC--ccEE
Q 021213 65 VITMLPSSSH--------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWEN--PVML 134 (316)
Q Consensus 65 vi~~vp~~~~--------~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~--~~~~ 134 (316)
+|+|||++.. ++++..+.+.+.++ +|.+||.-||+.|++++++..++.+.. .|..-+ +...
T Consensus 88 ~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~-----kG~LVIlEST~~PGTTe~v~~plle~~----sgL~~~~Df~la 158 (436)
T COG0677 88 FIICVPTPLKKYREPDLSYVESAARSIAPVLK-----KGDLVILESTTPPGTTEEVVKPLLEER----SGLKFGEDFYLA 158 (436)
T ss_pred EEEEecCCcCCCCCCChHHHHHHHHHHHHhcC-----CCCEEEEecCCCCCcHHHHHHHHHhhc----CCCcccceeeEe
Confidence 9999998632 24444444444553 678999999999999999999887641 111111 2333
Q ss_pred eccCC---CChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021213 135 DAPVS---GGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS 211 (316)
Q Consensus 135 ~~p~~---~~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~ 211 (316)
.+|.. |...........++.|-+++..+.+..+++.+-..++.+.+...|++.|+..|.+...++++++|...+|.+
T Consensus 159 ysPERv~PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~ 238 (436)
T COG0677 159 YSPERVLPGNVLKELVNNPKVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNA 238 (436)
T ss_pred eCccccCCCchhhhhhcCCceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 45543 333322223334555558888889999999987778888888999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 021213 212 LGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIY 289 (316)
Q Consensus 212 ~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~ 289 (316)
+|+|..++.++.+.-+ | ...+.|.|+. +..|+..|--++...++++|+++.+++++.++.
T Consensus 239 ~GIdvwevIeaAnt~P---~-~~~~~PGpGv--------------GGHCIpvDP~fl~~ka~~yg~~~rlI~tAreIN 298 (436)
T COG0677 239 MGIDVWEVIEAANTKP---R-VNIFYPGPGV--------------GGHCIPVDPYFLTWKAPEYGLPARLIRTAREIN 298 (436)
T ss_pred hCCcHHHHHHHhccCC---c-eeecCCCCCC--------------CCcccccCchheeecccccCCchHHHHHHHHHh
Confidence 9999999999976532 1 2223333332 234555555566777777777777777666543
No 33
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.91 E-value=2.9e-23 Score=180.80 Aligned_cols=245 Identities=20% Similarity=0.271 Sum_probs=173.5
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC----eEEEE-eCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY----KMAVH-DVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~----~V~~~-~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
|||+|||+|+||.+|++.|.++|| +|++| +|++++.+.+.+.|+..++++.++++++|+||+|+|. .. +++++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~~-~~-~~~vl 78 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVKP-QV-VKDVL 78 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEECc-HH-HHHHH
Confidence 689999999999999999999998 89999 9999999888888998888999999999999999974 44 89998
Q ss_pred cCCCCcccCCCCCCCeEEEEcCC-CCHHHHHHHHHHHhhchhhhccCCCCCccEE-eccCCCChHhhhcCceEEEec--C
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSST-IDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGTLTFMVG--G 156 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st-~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~--~ 156 (316)
.++.+.+ .+++++|+.++ .... .+.+..+. ..++ ..|.... ....+...+..+ .
T Consensus 79 ~~l~~~~-----~~~~~iIs~~~g~~~~---~l~~~~~~------------~~vvr~mP~~~~--~~~~~~~~l~~~~~~ 136 (266)
T PLN02688 79 TELRPLL-----SKDKLLVSVAAGITLA---DLQEWAGG------------RRVVRVMPNTPC--LVGEAASVMSLGPAA 136 (266)
T ss_pred HHHHhhc-----CCCCEEEEecCCCcHH---HHHHHcCC------------CCEEEECCCcHH--HHhCceEEEEeCCCC
Confidence 7654433 24567776644 3333 33333321 1233 2443322 222333223322 4
Q ss_pred CHHHHHHHHHHHHhcCCCeEeeCC---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc
Q 021213 157 SEDAYQAAKPLFLSMGKNTIYCGG---------AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 227 (316)
Q Consensus 157 ~~~~~~~v~~ll~~~g~~v~~~g~---------~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~ 227 (316)
+++.+++++++|+.+|. ++++++ .|++.+ +.+.++.++.|+ +.+.|++++++.+++..+.
T Consensus 137 ~~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~~g~g~a-------~~~~~~~a~~ea---~~~~Gl~~~~a~~~~~~~~ 205 (266)
T PLN02688 137 TADDRDLVATLFGAVGK-IWVVDEKLLDAVTGLSGSGPA-------YIFLAIEALADG---GVAAGLPRDVALSLAAQTV 205 (266)
T ss_pred CHHHHHHHHHHHHhCCC-EEEeCHHHcchhHhhhcCHHH-------HHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHH
Confidence 78899999999999998 888754 455555 366677788888 8899999999999998876
Q ss_pred CCccccc-cCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcC
Q 021213 228 ARCWSSD-SYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 296 (316)
Q Consensus 228 ~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 296 (316)
..++..- .....|..+ .++...|+.+. ...++.+++.|++-.+.+++.+.++++.+.+
T Consensus 206 ~gs~~l~~~~~~~~~~l----~~~v~spgG~t-------~~~l~~l~~~g~~~~~~~a~~~~~~r~~~~~ 264 (266)
T PLN02688 206 LGAAKMVLETGKHPGQL----KDMVTSPGGTT-------IAGVHELEKGGFRAALMNAVVAAAKRSRELS 264 (266)
T ss_pred HHHHHHHHhcCCCHHHH----HHhCCCCchHH-------HHHHHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence 5544321 111222222 12333444433 3678888899999999999999999998864
No 34
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.91 E-value=2.5e-23 Score=182.18 Aligned_cols=245 Identities=16% Similarity=0.243 Sum_probs=171.1
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCC----CeEEEEeCChh-HHHHHHh-CCCCCcCCHHHHhhcCCEEEEeCCCChhhHH
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAG----YKMAVHDVNCN-VMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHQVL 77 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g----~~V~~~~r~~~-~~~~l~~-~g~~~~~~~~~~~~~adivi~~vp~~~~~~~ 77 (316)
..|||+|||+|+||.+|++.|.++| ++|++|+|+++ +.+.+.+ .|+..+.++.+++++||+||+|+|.+. +.
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~--~~ 79 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKD--VA 79 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHH--HH
Confidence 3579999999999999999999998 89999999764 5677665 488778889999999999999999765 67
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCC---hHhhhcCceEEE
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG---VLAAEAGTLTFM 153 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~---~~~~~~g~~~~~ 153 (316)
+++.++.+.+. +++++|++ +++++++.+++ +.. +.|+.+. ......+..+++
T Consensus 80 ~vl~~l~~~~~-----~~~liIs~~aGi~~~~l~~~---~~~----------------~~~v~r~mPn~~~~~~~~~t~~ 135 (279)
T PRK07679 80 EALIPFKEYIH-----NNQLIISLLAGVSTHSIRNL---LQK----------------DVPIIRAMPNTSAAILKSATAI 135 (279)
T ss_pred HHHHHHHhhcC-----CCCEEEEECCCCCHHHHHHH---cCC----------------CCeEEEECCCHHHHHhcccEEE
Confidence 88766544332 45688986 77777655442 221 1222222 223444445666
Q ss_pred ecCC---HHHHHHHHHHHHhcCCCeE------e--eCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 021213 154 VGGS---EDAYQAAKPLFLSMGKNTI------Y--CGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKI 222 (316)
Q Consensus 154 ~~~~---~~~~~~v~~ll~~~g~~v~------~--~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~ 222 (316)
++++ ++.++.++++|+.+|..++ + ++..|++.+ +.+.++.++.|+ +.+.|++++++.++
T Consensus 136 ~~~~~~~~~~~~~v~~l~~~~G~~~~v~e~~~~~~~a~~Gsgpa-------~~~~~~eal~e~---~~~~Gl~~~~a~~~ 205 (279)
T PRK07679 136 SPSKHATAEHIQTAKALFETIGLVSVVEEEDMHAVTALSGSGPA-------YIYYVVEAMEKA---AKKIGLKEDVAKSL 205 (279)
T ss_pred eeCCCCCHHHHHHHHHHHHhCCcEEEeCHHHhhhHHHhhcCHHH-------HHHHHHHHHHHH---HHHcCCCHHHHHHH
Confidence 6654 6788999999999998654 3 444455555 244444455555 89999999999999
Q ss_pred HhhccCCc-cccccCCCCCCcccCCCCCCCC-CCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcC
Q 021213 223 LNSSSARC-WSSDSYNPVPGVMEGVPASRNY-GGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 296 (316)
Q Consensus 223 ~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 296 (316)
+..+..++ .........|..+ .+++ .+++++. ..++..++.|+.--+.+++.+.++++.+.+
T Consensus 206 ~~~~~~gsa~~~~~~~~~~~~l-----~~~v~spgg~t~-------~gl~~l~~~~~~~~i~~a~~~a~~r~~~l~ 269 (279)
T PRK07679 206 ILQTMIGAAEMLKASEKHPSIL-----RKEITSPGGTTE-------AGIEVLQEHRFQQALISCITQATQRSHNLG 269 (279)
T ss_pred HHHHHHHHHHHHHhcCCCHHHH-----HHhcCCCchHHH-------HHHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 98855332 2221112223332 2345 6676555 567777889999999999999999998875
No 35
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.91 E-value=1.1e-22 Score=190.83 Aligned_cols=262 Identities=15% Similarity=0.126 Sum_probs=176.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh-------------------CC-CCCcCCHHHHhhcCCE
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-------------------MG-VPTKETPFEVAEASDV 64 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~~adi 64 (316)
.|||+|||+|.||.+||.+|+++||+|++||+++++.+.+.+ .| +..++++++++++||+
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~ 83 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADW 83 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCE
Confidence 469999999999999999999999999999999998765421 12 5677889999999999
Q ss_pred EEEeCCCChhhHHHH-hcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChH
Q 021213 65 VITMLPSSSHQVLDV-YNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVL 143 (316)
Q Consensus 65 vi~~vp~~~~~~~~v-~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~ 143 (316)
||+|+|++.+ ++.. +.++...+ +++ ++|++||..+... .+.+.+.+. +..++.+|... +
T Consensus 84 Vieavpe~~~-vk~~l~~~l~~~~-----~~~-~iI~SsTsgi~~s-~l~~~~~~~----------~r~~~~hP~nP--~ 143 (495)
T PRK07531 84 IQESVPERLD-LKRRVLAEIDAAA-----RPD-ALIGSSTSGFLPS-DLQEGMTHP----------ERLFVAHPYNP--V 143 (495)
T ss_pred EEEcCcCCHH-HHHHHHHHHHhhC-----CCC-cEEEEcCCCCCHH-HHHhhcCCc----------ceEEEEecCCC--c
Confidence 9999999876 5554 44443333 233 5677777775533 555554332 14566666541 1
Q ss_pred hhhcCceEEEecCC---HHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHH
Q 021213 144 AAEAGTLTFMVGGS---EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLG-VSEALTLGQSLGISASTL 219 (316)
Q Consensus 144 ~~~~g~~~~~~~~~---~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~-~~Ea~~l~~~~G~~~~~~ 219 (316)
..++++.+++++ ++.+++++++++.+|+++++++. .+.|.+.+.++.+ +.|++.++++.|++++++
T Consensus 144 --~~~~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~v~~~k--------~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~i 213 (495)
T PRK07531 144 --YLLPLVELVGGGKTSPETIRRAKEILREIGMKPVHIAK--------EIDAFVGDRLLEALWREALWLVKDGIATTEEI 213 (495)
T ss_pred --ccCceEEEcCCCCCCHHHHHHHHHHHHHcCCEEEeecC--------CCcchhHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 123456677764 79999999999999999998873 4455555555666 599999999999999999
Q ss_pred HHHHhhccCCccccccCCCCCCcccCCCCCCCCCC-CcchhhHHHHHHHHH-HHHHHcCCCCcHHHHHHHHHHHHHHcCC
Q 021213 220 TKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGG-GFASKLMAKDLNLAL-ASAKEVGVDCPLTSQAQDIYAKLCENGH 297 (316)
Q Consensus 220 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~kd~~~~~-~~a~~~g~~~p~~~~~~~~~~~~~~~g~ 297 (316)
.+++..+.+.+|... .|+. ..+..+ ..++....+.+.-.+ +..++.+-..++.....+.+....+.-+
T Consensus 214 d~~~~~g~g~~~~~~--Gpf~--------~~dl~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (495)
T PRK07531 214 DDVIRYSFGLRWAQM--GLFE--------TYRIAGGEAGMRHFLAQFGPCLKWPWTKLMDVPDLDDALVDKIAGQSDAQS 283 (495)
T ss_pred HHHHhhccCCCcccc--chHH--------HHHhcCcHHHHHHHHHHhchhhhhHHHhccCCCccCHHHHHHHHHHHHHHc
Confidence 999998887766532 1210 011111 112233333333333 3346666556666666666666666556
Q ss_pred CCCcHHHHH
Q 021213 298 DSKDFSCVF 306 (316)
Q Consensus 298 g~~d~~~~~ 306 (316)
+..++..+.
T Consensus 284 ~~~~~~~~~ 292 (495)
T PRK07531 284 GGLSIRELE 292 (495)
T ss_pred CCCCHHHHH
Confidence 666555443
No 36
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.91 E-value=4.6e-23 Score=184.39 Aligned_cols=285 Identities=13% Similarity=0.061 Sum_probs=202.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-------CeEEEEeCChh-----HHHHHHhCC--------------CCCcCCHHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-------YKMAVHDVNCN-----VMKMFSDMG--------------VPTKETPFEV 58 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-------~~V~~~~r~~~-----~~~~l~~~g--------------~~~~~~~~~~ 58 (316)
+|||+|||+|+||+++|..|+++| |+|.+|.|+++ .++.+++.+ +..+++..++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 479999999999999999999997 89999999986 366676532 3456788899
Q ss_pred hhcCCEEEEeCCCChhhHHHHhcCCCC--cccCCCCCCCeEEEEcCCCC-HHHH--HHHHHHHhhchhhhccCCCCCccE
Q 021213 59 AEASDVVITMLPSSSHQVLDVYNGPNG--LLQGGNSVRPQLLIDSSTID-PQTS--RNISAAVSNCILKEKKDSWENPVM 133 (316)
Q Consensus 59 ~~~adivi~~vp~~~~~~~~v~~~~~~--~~~~~~~~~~~~vi~~st~~-~~~~--~~l~~~~~~~~~~~~~g~~~~~~~ 133 (316)
++++|+||+++|.+. +++++.++++ .+. ++.++|.++.+. +.+. +.+.+.+.+.- + ..+.+
T Consensus 91 v~~aDiIvlAVPsq~--l~~vl~~l~~~~~l~-----~~~~iIS~aKGIe~~t~~~~~~sevi~e~l-----~--~~~~~ 156 (365)
T PTZ00345 91 VEDADLLIFVIPHQF--LESVLSQIKENNNLK-----KHARAISLTKGIIVENGKPVLCSDVIEEEL-----G--IPCCA 156 (365)
T ss_pred HhcCCEEEEEcChHH--HHHHHHHhccccccC-----CCCEEEEEeCCcccCCCCcccHHHHHHHHh-----C--CCeEE
Confidence 999999999999876 8999998876 443 344677666554 3332 34555554421 1 01456
Q ss_pred EeccCCCChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCC---c--------------chHHHHHHHHHHHHH
Q 021213 134 LDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG---A--------------GNGAAAKICNNLTMA 196 (316)
Q Consensus 134 ~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~---~--------------g~a~~~k~~~n~~~~ 196 (316)
+..|.+.........+.+++++.|.+..+.++++|++-..+++...| . |....+++..|.-.+
T Consensus 157 LsGPs~A~Eva~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaa 236 (365)
T PTZ00345 157 LSGANVANDVAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSA 236 (365)
T ss_pred EECCCHHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHH
Confidence 78887765565566666777788999999999999876555544333 1 444445566778888
Q ss_pred HHHHHHHHHHHHHHHcC--CCHHHHHHHHhhccC--CccccccCCCCCCcccCCCCC-CCCCC------CcchhhHHHHH
Q 021213 197 VSMLGVSEALTLGQSLG--ISASTLTKILNSSSA--RCWSSDSYNPVPGVMEGVPAS-RNYGG------GFASKLMAKDL 265 (316)
Q Consensus 197 ~~~~~~~Ea~~l~~~~G--~~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~kd~ 265 (316)
.+.+++.|+..+++++| .++++++++.+.++. ++.+ .+++..+...+.-.. ..+.. ...+.+.....
T Consensus 237 litrgl~Em~~l~~a~g~~~~~~T~~glaG~GDLi~Tc~s--SRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~ 314 (365)
T PTZ00345 237 IIRIGLEEMKLFGKIFFPNVMDETFFESCGLADLITTCLG--GRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTL 314 (365)
T ss_pred HHHHHHHHHHHHHHHhCCCCCccchhccchHhHhhhcccC--CCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHH
Confidence 88999999999999997 499999999888873 3443 445443333211000 01100 01345677888
Q ss_pred HHHHHHHHHcCC--CCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhcC
Q 021213 266 NLALASAKEVGV--DCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGG 312 (316)
Q Consensus 266 ~~~~~~a~~~g~--~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~ 312 (316)
..+.++++++++ ++|+++++|+++ +++.+...+++.+...
T Consensus 315 ~~v~~l~~~~~i~~~~Pi~~~vy~il-------~~~~~~~~~~~~l~~r 356 (365)
T PTZ00345 315 KEVYEVLESHDLKKEFPLFTVTYKIA-------FEGADPSSLIDVLSTN 356 (365)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHH-------hCCCCHHHHHHHHHcC
Confidence 899999999999 899999999998 5666777777776644
No 37
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.90 E-value=1.6e-22 Score=181.47 Aligned_cols=286 Identities=16% Similarity=0.140 Sum_probs=197.6
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC---------------CCCcCCHHHHhhcCCEEEEe
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG---------------VPTKETPFEVAEASDVVITM 68 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g---------------~~~~~~~~~~~~~adivi~~ 68 (316)
.+|||+|||+|+||+++|..|+++| +|++|.|+++..+.+++.+ +..+++..++++++|+||+|
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVila 84 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMG 84 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEE
Confidence 3579999999999999999999999 6889999999998887643 12345777888999999999
Q ss_pred CCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCC-HHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhc
Q 021213 69 LPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID-PQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEA 147 (316)
Q Consensus 69 vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~ 147 (316)
+|... +++++.++.+.+. ++..+|.++.+. .++.+.+.+.+.+.- .+ ....++..|.+.. ....
T Consensus 85 vps~~--~~~vl~~i~~~l~-----~~~~vIsl~kGi~~~t~~~~se~i~~~l----~~--~~~~~l~GP~~a~--ev~~ 149 (341)
T PRK12439 85 VPSHG--FRGVLTELAKELR-----PWVPVVSLVKGLEQGTNMRMSQIIEEVL----PG--HPAGILAGPNIAR--EVAE 149 (341)
T ss_pred eCHHH--HHHHHHHHHhhcC-----CCCEEEEEEeCCcCCCCCcHHHHHHHHc----CC--CCeEEEECCCHHH--HHHc
Confidence 99765 7999988877663 334566655544 333344444443310 00 0123456664422 2223
Q ss_pred Cc--eEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHH-----------------HHHHHHHHHHHHH
Q 021213 148 GT--LTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTM-----------------AVSMLGVSEALTL 208 (316)
Q Consensus 148 g~--~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~-----------------~~~~~~~~Ea~~l 208 (316)
+. ..++.+.+++..+.++++|+.-+.+++...++-..+|-|.+-|... +.+.+++.|+..+
T Consensus 150 g~~t~~via~~~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~ 229 (341)
T PRK12439 150 GYAAAAVLAMPDQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKL 229 (341)
T ss_pred CCCeEEEEEeCCHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 33 3345556888889999999998877777777666666666666443 3457899999999
Q ss_pred HHHcCCCHHHHHHHHhhccC--CccccccCCCCCCccc--CCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHH
Q 021213 209 GQSLGISASTLTKILNSSSA--RCWSSDSYNPVPGVME--GVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQ 284 (316)
Q Consensus 209 ~~~~G~~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~ 284 (316)
+++.|.++++++++.+.++. ++.+...+++..+... |...+.-...-..+.+.......+.++++++++++|++++
T Consensus 230 ~~a~G~~~~t~~gl~G~GDl~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~ 309 (341)
T PRK12439 230 GVAMGGNPETFAGLAGMGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIARE 309 (341)
T ss_pred HHHhCCCcccccccchhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHH
Confidence 99999999999999888873 4444334444433321 1111100000112356778888999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHhcC
Q 021213 285 AQDIYAKLCENGHDSKDFSCVFQHYYGG 312 (316)
Q Consensus 285 ~~~~~~~~~~~g~g~~d~~~~~~~~~~~ 312 (316)
+++++ +++.|...+++.+...
T Consensus 310 ~~~il-------~~~~~~~~~~~~l~~~ 330 (341)
T PRK12439 310 VDAVI-------NHGSTVEQAYRGLIAE 330 (341)
T ss_pred HHHHH-------hCCCCHHHHHHHHhcC
Confidence 99998 6677888888877653
No 38
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.89 E-value=7.2e-23 Score=182.00 Aligned_cols=278 Identities=13% Similarity=0.049 Sum_probs=194.5
Q ss_pred eEEEEccchhhHHHHHHHHhCC--------CeEEEEeC-----ChhHHHHHHhC--------C------CCCcCCHHHHh
Q 021213 7 SVGFIGLGNMGFRMASNLMKAG--------YKMAVHDV-----NCNVMKMFSDM--------G------VPTKETPFEVA 59 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g--------~~V~~~~r-----~~~~~~~l~~~--------g------~~~~~~~~~~~ 59 (316)
||+|||+|+||+++|..|+++| |+|++|.| +++..+.+++. | +..++++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6999999999999999999999 99999999 55555555542 1 33557889999
Q ss_pred hcCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCC-HH--HHHHHHHHHhhchhhhccCCCCCccEEec
Q 021213 60 EASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID-PQ--TSRNISAAVSNCILKEKKDSWENPVMLDA 136 (316)
Q Consensus 60 ~~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~-~~--~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 136 (316)
+++|+||+++|++. +++++.++++.+. +++++|.++.+. +. +.+.+.+.+.+.- + ....++..
T Consensus 81 ~~ADiIIlAVPs~~--i~~vl~~l~~~l~-----~~~~iVs~tKGie~~~~~~~~~se~i~e~l-----~--~~~~~lsG 146 (342)
T TIGR03376 81 KGADILVFVIPHQF--LEGICKQLKGHVK-----PNARAISCIKGLEVSKDGVKLLSDIIEEEL-----G--IPCGVLSG 146 (342)
T ss_pred hcCCEEEEECChHH--HHHHHHHHHhhcC-----CCCEEEEEeCCcccCCCcCccHHHHHHHHh-----C--CCeEEeeC
Confidence 99999999999876 7999988877664 345677666554 44 5566666665421 1 11456788
Q ss_pred cCCCChHhhhcCceEEEecCC----HHHHHHHHHHHHhcCCCeEeeCC---c--------------chHHHHHHHHHHHH
Q 021213 137 PVSGGVLAAEAGTLTFMVGGS----EDAYQAAKPLFLSMGKNTIYCGG---A--------------GNGAAAKICNNLTM 195 (316)
Q Consensus 137 p~~~~~~~~~~g~~~~~~~~~----~~~~~~v~~ll~~~g~~v~~~g~---~--------------g~a~~~k~~~n~~~ 195 (316)
|.+.........+.+++++.+ .+..+.++++|++-..+++...+ . |....+++..|.-.
T Consensus 147 P~~A~Eva~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~a 226 (342)
T TIGR03376 147 ANLANEVAKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKA 226 (342)
T ss_pred cchHHHHHcCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 877655555555666777777 88899999999875554444333 1 34444445667888
Q ss_pred HHHHHHHHHHHHHHHHcCCCHH--HHHHHHhhccC--CccccccCCCCCCcccCC---CCCCCCCC--CcchhhHHHHHH
Q 021213 196 AVSMLGVSEALTLGQSLGISAS--TLTKILNSSSA--RCWSSDSYNPVPGVMEGV---PASRNYGG--GFASKLMAKDLN 266 (316)
Q Consensus 196 ~~~~~~~~Ea~~l~~~~G~~~~--~~~~~~~~~~~--~s~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~kd~~ 266 (316)
+.+.+++.|+.++++++|.+++ +++++.+.++. ++.+ .|++..+...+. ..+.-... ...+.+......
T Consensus 227 alitrgl~Em~~l~~~~g~~~~~~T~~gl~G~GDL~~Tc~s--sRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~ 304 (342)
T TIGR03376 227 AVMRRGLLEMIKFARMFFPTGEVTFTFESCGVADLITTCLG--GRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAK 304 (342)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCcccccchhhhhhheeec--CccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHH
Confidence 8889999999999999999887 99988888873 3333 444443332211 10000000 112345667778
Q ss_pred HHHHHHHHcCCC--CcHHHHHHHHHHHHHHcCCCCCcHHHHHH
Q 021213 267 LALASAKEVGVD--CPLTSQAQDIYAKLCENGHDSKDFSCVFQ 307 (316)
Q Consensus 267 ~~~~~a~~~g~~--~p~~~~~~~~~~~~~~~g~g~~d~~~~~~ 307 (316)
.+.+++++.+++ +|+++++++++. ++.+...+++
T Consensus 305 ~~~~l~~~~~i~~~~Pi~~~vy~il~-------~~~~~~~~~~ 340 (342)
T TIGR03376 305 EVHELLKNKNKDDEFPLFEAVYQILY-------EGLPPKKLPE 340 (342)
T ss_pred HHHHHHHHcCCCcCCCHHHHHHHHHh-------CCCCHHHHHh
Confidence 899999999999 999999999984 4455555544
No 39
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.89 E-value=2.4e-21 Score=172.49 Aligned_cols=201 Identities=19% Similarity=0.241 Sum_probs=157.7
Q ss_pred CeEEEEccchh--------------------hHHHHHHHHhCCCeEEEEeCChh-----HHHHHHhCCCCCcCCHHHHhh
Q 021213 6 QSVGFIGLGNM--------------------GFRMASNLMKAGYKMAVHDVNCN-----VMKMFSDMGVPTKETPFEVAE 60 (316)
Q Consensus 6 ~~IgiiG~G~m--------------------G~~la~~l~~~g~~V~~~~r~~~-----~~~~l~~~g~~~~~~~~~~~~ 60 (316)
|||.|.|+|+- |++||.+|+++||+|++|||+++ +.+.+.+.|+..++++.++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~ 80 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAK 80 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHh
Confidence 68999999974 78899999999999999999987 556677789888889999999
Q ss_pred cCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHH-HHHHHHHhhchhhhccCCCCCccEE-eccC
Q 021213 61 ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTS-RNISAAVSNCILKEKKDSWENPVML-DAPV 138 (316)
Q Consensus 61 ~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~-~~l~~~~~~~~~~~~~g~~~~~~~~-~~p~ 138 (316)
+||+||+|+|.+.. +++++..+.+.+ .++++|+|+||+++... +.+.+.+.... +..| +++. +.++
T Consensus 81 ~ADvVIlaVP~~~~-v~~Vl~~L~~~L-----~~g~IVId~ST~~~~~~s~~l~~~l~~~~--~~~g----i~~~~p~~v 148 (342)
T PRK12557 81 HGEIHILFTPFGKK-TVEIAKNILPHL-----PENAVICNTCTVSPVVLYYSLEGELRTKR--KDVG----ISSMHPAAV 148 (342)
T ss_pred CCCEEEEECCCcHH-HHHHHHHHHhhC-----CCCCEEEEecCCCHHHHHHHHHHHhcccc--cccC----eeecCCccc
Confidence 99999999998875 788886554444 25679999999998876 67766664221 0111 3332 2333
Q ss_pred CCChHhhhcCceEEEecC--------CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021213 139 SGGVLAAEAGTLTFMVGG--------SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ 210 (316)
Q Consensus 139 ~~~~~~~~~g~~~~~~~~--------~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~ 210 (316)
.++ ..+...++.++ +++.+++++++|+.+|+++++++. |.+..+|+++|.+.+..+.+.+|++.+++
T Consensus 149 ~Ga----e~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~~-g~~~~vk~~~n~l~av~~a~~aE~~~l~~ 223 (342)
T PRK12557 149 PGT----PQHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVPA-DVVSAVADMGSLVTAVALSGVLDYYSVGT 223 (342)
T ss_pred ccc----ccchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 23333455543 889999999999999998877775 99999999999999999999999999999
Q ss_pred HcCCCHHHHHHHH
Q 021213 211 SLGISASTLTKIL 223 (316)
Q Consensus 211 ~~G~~~~~~~~~~ 223 (316)
+.|.+|+++.+-+
T Consensus 224 ~~~~~p~~~~~~~ 236 (342)
T PRK12557 224 KIIKAPKEMIEKQ 236 (342)
T ss_pred HhCCCHHHHHHHH
Confidence 9999988775543
No 40
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.88 E-value=3e-21 Score=172.94 Aligned_cols=281 Identities=14% Similarity=0.129 Sum_probs=176.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC--C------------CCcCCHHHHh-hcCCEEEEeCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--V------------PTKETPFEVA-EASDVVITMLP 70 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g--~------------~~~~~~~~~~-~~adivi~~vp 70 (316)
|||+|||+|+||++++..|+++||+|++|+|+++.++.+++.+ . ...++..+.+ .++|+||+|||
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk 80 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP 80 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence 5899999999999999999999999999999998888887632 1 1335566665 58999999999
Q ss_pred CChhhHHHHhcCCCC-cccCCCCCCCeEEEEcCCCC-HHH----HHHHHHHHhhchhhhccCCCCCccEEeccCCCChHh
Q 021213 71 SSSHQVLDVYNGPNG-LLQGGNSVRPQLLIDSSTID-PQT----SRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLA 144 (316)
Q Consensus 71 ~~~~~~~~v~~~~~~-~~~~~~~~~~~~vi~~st~~-~~~----~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~ 144 (316)
+.. +++++.++.+ .+. ++..++..+++. ..+ .+.+.+.++.+. ...+..|.+.....
T Consensus 81 s~~--~~~~l~~l~~~~l~-----~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~----------~~~~~Gp~~a~~~~ 143 (326)
T PRK14620 81 TQQ--LRTICQQLQDCHLK-----KNTPILICSKGIEKSSLKFPSEIVNEILPNNP----------IAILSGPSFAKEIA 143 (326)
T ss_pred HHH--HHHHHHHHHHhcCC-----CCCEEEEEEcCeeCCCCccHHHHHHHHcCCCc----------eEeecCCcHHHHHH
Confidence 766 7899888766 553 233444444433 211 122333322210 22334443211111
Q ss_pred hhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHH-----------------HHHHHHHHHH
Q 021213 145 AEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAV-----------------SMLGVSEALT 207 (316)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~-----------------~~~~~~Ea~~ 207 (316)
....+...+.+.+.+..+++.++|+.-+.+++...++-...|.|++-|.+... +.+++.|+..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~ 223 (326)
T PRK14620 144 EKLPCSIVLAGQNETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKT 223 (326)
T ss_pred cCCCcEEEEecCCHHHHHHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Confidence 11122234455567777788888888777777777777788888888875332 3668899999
Q ss_pred HHHHcCC--CHHHHHHHHhhccC--CccccccCCCCCCcc--cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcH
Q 021213 208 LGQSLGI--SASTLTKILNSSSA--RCWSSDSYNPVPGVM--EGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPL 281 (316)
Q Consensus 208 l~~~~G~--~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~ 281 (316)
++++.|. ++++++++.+.++. .+.....++...+.. .|.+.++......+..+....+..++++++++|+++|+
T Consensus 224 v~~a~G~~~~~~~~~gl~g~gdl~~t~~~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i~~P~ 303 (326)
T PRK14620 224 LYSAKNGSIDLNTLIGPSCLGDLILTCTTLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNIELPI 303 (326)
T ss_pred HHHHhCCCCCcchhhccchhhhhhheecCCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCCCCCH
Confidence 9999987 88998654433321 111111222111111 01010000001112234555667899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHHHh
Q 021213 282 TSQAQDIYAKLCENGHDSKDFSCVFQHYY 310 (316)
Q Consensus 282 ~~~~~~~~~~~~~~g~g~~d~~~~~~~~~ 310 (316)
++.+++++ +++.+...+++.++
T Consensus 304 ~~~l~~~~-------~~~~~~~~~~~~~~ 325 (326)
T PRK14620 304 CESIYNLL-------YENISLEKTISVIL 325 (326)
T ss_pred HHHHHHHH-------hCCCCHHHHHHHHh
Confidence 99999987 55667777766653
No 41
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.87 E-value=6.6e-21 Score=165.37 Aligned_cols=256 Identities=17% Similarity=0.208 Sum_probs=177.7
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCC----eEEEEeCChhHHHHHHh-CCCCCcCCHHHHhhcCCEEEEeCCCChhhHHH
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGY----KMAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~----~V~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~ 78 (316)
|++||+|||+|+||.+|+..|.++|+ +|++|||++++++.+.+ .|+..+++..+++++||+||+|+|. .. +++
T Consensus 1 ~~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~-~~~ 78 (272)
T PRK12491 1 MNKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DL-YSS 78 (272)
T ss_pred CCCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HH-HHH
Confidence 56799999999999999999999885 69999999999888875 7877778888999999999999985 44 899
Q ss_pred HhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc-hhhhccCCCCCccEEeccCCCChHhhhcCceEEEecC-
Q 021213 79 VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC-ILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG- 156 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~-~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~- 156 (316)
++.++.+.++ +++++|+...+.+ ...+.+.++.. .+. ..+++.|. ....|...+..+.
T Consensus 79 vl~~l~~~~~-----~~~lvISi~AGi~--i~~l~~~l~~~~~vv--------R~MPN~~~-----~vg~g~t~~~~~~~ 138 (272)
T PRK12491 79 VINQIKDQIK-----NDVIVVTIAAGKS--IKSTENEFDRKLKVI--------RVMPNTPV-----LVGEGMSALCFNEM 138 (272)
T ss_pred HHHHHHHhhc-----CCcEEEEeCCCCc--HHHHHHhcCCCCcEE--------EECCChHH-----HHcCceEEEEeCCC
Confidence 9877655443 4468888776653 24566655421 110 23444443 3334443333332
Q ss_pred -CHHHHHHHHHHHHhcCCCeEeeCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCcc-c
Q 021213 157 -SEDAYQAAKPLFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCW-S 232 (316)
Q Consensus 157 -~~~~~~~v~~ll~~~g~~v~~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~-~ 232 (316)
+++..+.++.+|+.+|.. +.+.+ .....++--+...+.+.++.++.++ +.+.|++.++..+++.++..++. .
T Consensus 139 ~~~~~~~~v~~lf~~~G~~-~~~~E~~~d~~talsgsgPAf~~~~~eal~~a---~v~~Gl~~~~A~~l~~~t~~G~a~l 214 (272)
T PRK12491 139 VTEKDIKEVLNIFNIFGQT-EVVNEKLMDVVTSISGSSPAYVYMFIEAMADA---AVLGGMPRKQAYKFAAQAVLGSAKM 214 (272)
T ss_pred CCHHHHHHHHHHHHcCCCE-EEEcHHHhhhHHHhccCcHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 567788999999999985 56654 3344444344445666666666666 88999999999999888653321 1
Q ss_pred cccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcC
Q 021213 233 SDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 296 (316)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 296 (316)
.......|..+ .++..+||.+.. ..++..++.|+.--+.+++.+.++++.+.+
T Consensus 215 l~~~~~~p~~l----~~~V~sPGGtT~-------~gl~~le~~~~~~~~~~av~aa~~r~~el~ 267 (272)
T PRK12491 215 VLETGIHPGEL----KDMVCSPGGTTI-------EAVATLEEKGLRTAIISAMKRCTQKSMEMS 267 (272)
T ss_pred HHhcCCCHHHH----HHhCCCCchHHH-------HHHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 11111222222 234456665544 567777889999999999999999988753
No 42
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.86 E-value=5.3e-21 Score=163.44 Aligned_cols=202 Identities=21% Similarity=0.353 Sum_probs=171.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC---C--CCCcCCHHHHh---hcCCEEEEeCCCChhhHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM---G--VPTKETPFEVA---EASDVVITMLPSSSHQVL 77 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~---g--~~~~~~~~~~~---~~adivi~~vp~~~~~~~ 77 (316)
+.||.||++.||..++-+.+++||.|.+|||+.++++.+.+. | +..+.|+++.+ +.+..|++.++.... +.
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~p-VD 85 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAP-VD 85 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCc-HH
Confidence 689999999999999999999999999999999999887542 2 56678999875 568889998888776 88
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEcCCCC-HHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecC
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDSSTID-PQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG 156 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~st~~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~ 156 (316)
..++++.+++. ++.+|||-.+.. +.+.++..+ +... |..|+...++|+..++..|+ ++|.||
T Consensus 86 ~~I~~L~p~Le-----kgDiIIDGGNs~y~dT~RR~~e-l~k~----------GilfvG~GVSGGEEGAR~GP-SlMpGg 148 (487)
T KOG2653|consen 86 QFIEELVPYLE-----KGDIIIDGGNSEYQDTERRCRE-LAKK----------GILFVGSGVSGGEEGARYGP-SLMPGG 148 (487)
T ss_pred HHHHHHHhhcC-----CCCEEEeCCcccCcchHHHHHH-HHhc----------CcEEEecCccCcccccccCC-ccCCCC
Confidence 88888777775 567999998887 555555544 4332 37899999999999999999 899999
Q ss_pred CHHHHHHHHHHHHhcCC-------CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHhh
Q 021213 157 SEDAYQAAKPLFLSMGK-------NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQS-LGISASTLTKILNS 225 (316)
Q Consensus 157 ~~~~~~~v~~ll~~~g~-------~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~-~G~~~~~~~~~~~~ 225 (316)
+++++..++++|+.+.. .+.++|+.|+++.+||++|.+.+.=|++++|++.+.++ .|++-+++.++...
T Consensus 149 ~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~ 225 (487)
T KOG2653|consen 149 SKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDD 225 (487)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHh
Confidence 99999999999988742 34789999999999999999999999999999999998 88998888777643
No 43
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.85 E-value=4.2e-20 Score=157.09 Aligned_cols=254 Identities=19% Similarity=0.228 Sum_probs=173.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC----CeEEEEeCChhHHHHHH-hCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG----YKMAVHDVNCNVMKMFS-DMGVPTKETPFEVAEASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g----~~V~~~~r~~~~~~~l~-~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v 79 (316)
+|||||||+|+||.+|+..|.++| .+|++.+|++++.+.+. +.|+..+++.+++.+++|+||+||+... ++++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKPq~--~~~v 78 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKPQD--LEEV 78 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeChHh--HHHH
Confidence 368999999999999999999999 68999999999997544 4677667788899999999999987544 8999
Q ss_pred hcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEec--CC
Q 021213 80 YNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG--GS 157 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~--~~ 157 (316)
+.++++ .. +++++|....+.+ ...+.++++...+. ..++|.|.. ...|...+..+ .+
T Consensus 79 l~~l~~-~~-----~~~lvISiaAGv~--~~~l~~~l~~~~vv--------R~MPNt~a~-----vg~g~t~i~~~~~~~ 137 (266)
T COG0345 79 LSKLKP-LT-----KDKLVISIAAGVS--IETLERLLGGLRVV--------RVMPNTPAL-----VGAGVTAISANANVS 137 (266)
T ss_pred HHHhhc-cc-----CCCEEEEEeCCCC--HHHHHHHcCCCceE--------EeCCChHHH-----HcCcceeeecCccCC
Confidence 998876 32 4568887766553 35666666522110 234454432 33344333333 27
Q ss_pred HHHHHHHHHHHHhcCCCeEeeCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCcc-ccc
Q 021213 158 EDAYQAAKPLFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCW-SSD 234 (316)
Q Consensus 158 ~~~~~~v~~ll~~~g~~v~~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~-~~~ 234 (316)
++..+.+..+|+.+|+ ++++.+ .....++--...++.+.++.++.++ +.+.|++.++..+++.++..++. ...
T Consensus 138 ~~~~~~v~~l~~~~G~-v~~v~E~~~da~TaisGSgPAyv~~~iEal~~a---gv~~Gl~~~~A~~l~~~t~~Gaakll~ 213 (266)
T COG0345 138 EEDKAFVEALLSAVGK-VVEVEESLMDAVTALSGSGPAYVFLFIEALADA---GVRLGLPREEARELAAQTVAGAAKLLL 213 (266)
T ss_pred HHHHHHHHHHHHhcCC-eEEechHHhhHHHHHhcCCHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999998 456655 2222222222333455555555555 78999999999999988764332 222
Q ss_pred cCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcC
Q 021213 235 SYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 296 (316)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 296 (316)
.....|..+ .++..+||.++.. .++..++.|++.-+.+++.+.++++.+.|
T Consensus 214 e~~~~p~~L----r~~VtSPGGtTia-------gl~~le~~g~~~~v~~av~aa~~r~~el~ 264 (266)
T COG0345 214 ESGEHPAEL----RDQVTSPGGTTIA-------GLRVLEEDGFRGAVIEAVEAAYKRSEELG 264 (266)
T ss_pred hcCCCHHHH----HHhCcCCCchHHH-------HHHHHHHhChHHHHHHHHHHHHHHHHHhc
Confidence 222233333 2455677776664 44555588999999999999999988765
No 44
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.85 E-value=2.7e-20 Score=163.82 Aligned_cols=191 Identities=18% Similarity=0.210 Sum_probs=138.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----------C-------------CCCCcCCHHHHhhc
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------M-------------GVPTKETPFEVAEA 61 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~-------------g~~~~~~~~~~~~~ 61 (316)
+||+|||+|.||..+|..|+++||+|++||+++++++.+.+ . ++..++++.+++++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 58999999999999999999999999999999998776542 1 13456788889999
Q ss_pred CCEEEEeCCCChhhHHH-HhcCCCCcccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCC
Q 021213 62 SDVVITMLPSSSHQVLD-VYNGPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS 139 (316)
Q Consensus 62 adivi~~vp~~~~~~~~-v~~~~~~~~~~~~~~~~~~v-i~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~ 139 (316)
||+||+|+|++.+ ++. ++.++.+.++ ++.++ +++||.++.... +.+.. +.+.. |.||+ .|+.
T Consensus 82 aD~Vi~avpe~~~-~k~~~~~~l~~~~~-----~~~il~~~tSt~~~~~l~---~~~~~--~~r~~----g~h~~-~Pv~ 145 (288)
T PRK09260 82 ADLVIEAVPEKLE-LKKAVFETADAHAP-----AECYIATNTSTMSPTEIA---SFTKR--PERVI----AMHFF-NPVH 145 (288)
T ss_pred CCEEEEeccCCHH-HHHHHHHHHHhhCC-----CCcEEEEcCCCCCHHHHH---hhcCC--cccEE----EEecC-CCcc
Confidence 9999999999876 544 4444433332 44444 789998886543 33322 11122 26777 6765
Q ss_pred CChHhhhcCceEEEecC---CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 021213 140 GGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 216 (316)
Q Consensus 140 ~~~~~~~~g~~~~~~~~---~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~ 216 (316)
++ +++.++++ +++.+++++++++.+|++++++++ ..+.. .|-+. ...++|++.+.+..-.++
T Consensus 146 ~~-------~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d-~~Gf~----~nRl~---~~~~~ea~~~~~~gv~~~ 210 (288)
T PRK09260 146 KM-------KLVELIRGLETSDETVQVAKEVAEQMGKETVVVNE-FPGFV----TSRIS---ALVGNEAFYMLQEGVATA 210 (288)
T ss_pred cC-------ceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecC-cccHH----HHHHH---HHHHHHHHHHHHcCCCCH
Confidence 43 45777776 999999999999999999999987 23443 44433 345679988887755789
Q ss_pred HHHHHHHhhcc
Q 021213 217 STLTKILNSSS 227 (316)
Q Consensus 217 ~~~~~~~~~~~ 227 (316)
+++...+..+.
T Consensus 211 ~~iD~~~~~g~ 221 (288)
T PRK09260 211 EDIDKAIRLGL 221 (288)
T ss_pred HHHHHHHHhCC
Confidence 99988876543
No 45
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.85 E-value=3.6e-20 Score=164.64 Aligned_cols=262 Identities=13% Similarity=0.155 Sum_probs=171.4
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC-------------CcCCHHHHhhcCCEEEEeCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-------------TKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~-------------~~~~~~~~~~~adivi~~vp~~ 72 (316)
|||+|||+|.||+.+|..|+++||+|++|+| +++.+.+++.|.. ..++.+++.+.+|+||+|+|+.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~ 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence 6899999999999999999999999999999 8888888776532 2345566668899999999987
Q ss_pred hhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEE
Q 021213 73 SHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTF 152 (316)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~ 152 (316)
. +++++..+.+.+. ++.+|+...++ .+..+.+.+.++...+ ..++.+..++..++......+...+
T Consensus 80 ~--~~~~~~~l~~~~~-----~~~~ii~~~nG-~~~~~~l~~~~~~~~v------~~g~~~~~~~~~~~g~v~~~~~~~~ 145 (305)
T PRK12921 80 Q--LDAAIPDLKPLVG-----EDTVIIPLQNG-IGQLEQLEPYFGRERV------LGGVVFISAQLNGDGVVVQRADHRL 145 (305)
T ss_pred C--HHHHHHHHHhhcC-----CCCEEEEeeCC-CChHHHHHHhCCcccE------EEEEEEEEEEECCCeEEEEcCCCcE
Confidence 6 6888877665442 33456655544 3334556655543221 1113444444332111111122234
Q ss_pred EecC----CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHH---------------------HHHHHHHHHH
Q 021213 153 MVGG----SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAV---------------------SMLGVSEALT 207 (316)
Q Consensus 153 ~~~~----~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~---------------------~~~~~~Ea~~ 207 (316)
.+|. ..+..+.+.++|+..+.++....++-...|.|++.|...+. ...++.|...
T Consensus 146 ~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~ 225 (305)
T PRK12921 146 TFGEIPGQRSERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLA 225 (305)
T ss_pred EEcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHH
Confidence 4442 24566778888888887777777788899999998865432 3457889999
Q ss_pred HHHHcCCC--HHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHH
Q 021213 208 LGQSLGIS--ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQA 285 (316)
Q Consensus 208 l~~~~G~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~ 285 (316)
++++.|++ ++...+.+..-... ......+...++..+++.+-++..| .++++++++|+++|.++.+
T Consensus 226 v~~a~G~~~~~~~~~~~~~~~~~~-~~~~~sSm~~D~~~gr~tEid~i~G-----------~vv~~a~~~gv~~P~~~~l 293 (305)
T PRK12921 226 VARAEGAPLRDDVVEEIVKIFAGA-PGDMKTSMLRDMEKGRPLEIDHLQG-----------VLLRRARAHGIPTPILDTV 293 (305)
T ss_pred HHHHcCCCCChhHHHHHHHHHhcc-CCCCCcHHHHHHHcCCcccHHHHHH-----------HHHHHHHHhCCCCcHHHHH
Confidence 99999976 33343333221100 0001112334455555555555444 7999999999999999999
Q ss_pred HHHHHHHHH
Q 021213 286 QDIYAKLCE 294 (316)
Q Consensus 286 ~~~~~~~~~ 294 (316)
+++++....
T Consensus 294 ~~~~~~~~~ 302 (305)
T PRK12921 294 YALLKAYEA 302 (305)
T ss_pred HHHHHHHhh
Confidence 999877543
No 46
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.85 E-value=5e-20 Score=163.98 Aligned_cols=195 Identities=21% Similarity=0.238 Sum_probs=135.5
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-----C--------------CCCcCCHHHHhhcCCEEE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----G--------------VPTKETPFEVAEASDVVI 66 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-----g--------------~~~~~~~~~~~~~adivi 66 (316)
++|+|||+|.||++|+..|+++||+|++||+++++++.+.+. + +..+++.++++++||+||
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 689999999999999999999999999999999887766541 2 234567888889999999
Q ss_pred EeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhh
Q 021213 67 TMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE 146 (316)
Q Consensus 67 ~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~ 146 (316)
+|+|.+.+....++..+.++++ ++ ++|.+++.+.. ...+++.+.... +..+ .++.++|..+.
T Consensus 85 ~av~~~~~~~~~v~~~l~~~~~-----~~-~ii~s~tsg~~-~~~l~~~~~~~~--~~ig----~h~~~p~~~~~----- 146 (311)
T PRK06130 85 EAVPEKLELKRDVFARLDGLCD-----PD-TIFATNTSGLP-ITAIAQAVTRPE--RFVG----THFFTPADVIP----- 146 (311)
T ss_pred EeccCcHHHHHHHHHHHHHhCC-----CC-cEEEECCCCCC-HHHHHhhcCCcc--cEEE----EccCCCCccCc-----
Confidence 9999875424566665544442 33 34444443433 345655553210 0111 45544443322
Q ss_pred cCceEEEecC---CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 021213 147 AGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 223 (316)
Q Consensus 147 ~g~~~~~~~~---~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~ 223 (316)
+..++.+ +++.++.++++++.+|+.+++++....+. +++|.+ ...++|++.++++.|++++++.+++
T Consensus 147 ---l~~i~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~---i~nr~~----~~~~~Ea~~l~~~g~~~~~~id~~~ 216 (311)
T PRK06130 147 ---LVEVVRGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGF---IANRIQ----HALAREAISLLEKGVASAEDIDEVV 216 (311)
T ss_pred ---eEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCc---HHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 2333332 78999999999999999888887423333 456653 3568999999999999999999999
Q ss_pred hhccC
Q 021213 224 NSSSA 228 (316)
Q Consensus 224 ~~~~~ 228 (316)
..+.+
T Consensus 217 ~~~~g 221 (311)
T PRK06130 217 KWSLG 221 (311)
T ss_pred HhcCC
Confidence 76544
No 47
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.84 E-value=1.7e-19 Score=160.28 Aligned_cols=260 Identities=14% Similarity=0.174 Sum_probs=172.2
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC-----------CcCCHHHHhhcCCEEEEeCCCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----------TKETPFEVAEASDVVITMLPSSSH 74 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~-----------~~~~~~~~~~~adivi~~vp~~~~ 74 (316)
|||+|||+|+||+.+|..|.++||+|++++|++++.+.+++.|.. ..+++.++ +.+|+||+|+|...
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~~- 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAYQ- 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEeccccc-
Confidence 689999999999999999999999999999998888888876653 24455555 88999999999765
Q ss_pred hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCC--ChHhhhcCceEE
Q 021213 75 QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG--GVLAAEAGTLTF 152 (316)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~--~~~~~~~g~~~~ 152 (316)
+++++..+.+.+. ++.+||...++ .+..+.+.+.+....+. . +..+..+-..+ .......+. +
T Consensus 79 -~~~~~~~l~~~l~-----~~~~iv~~~nG-~~~~~~l~~~~~~~~i~--~----~~~~~~~~~~~p~~v~~~~~g~--~ 143 (304)
T PRK06522 79 -LPAALPSLAPLLG-----PDTPVLFLQNG-VGHLEELAAYIGPERVL--G----GVVTHAAELEGPGVVRHTGGGR--L 143 (304)
T ss_pred -HHHHHHHHhhhcC-----CCCEEEEecCC-CCcHHHHHHhcCcccEE--E----EEEEEeeEecCCCEEEEcCCCC--E
Confidence 7888887766553 33456655554 33334555554432110 0 01111111111 111122233 2
Q ss_pred EecC---CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Q 021213 153 MVGG---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAV---------------------SMLGVSEALTL 208 (316)
Q Consensus 153 ~~~~---~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~---------------------~~~~~~Ea~~l 208 (316)
.+|. +.+..+.+.++|+..+.++....++....|.|++.|..... ...++.|...+
T Consensus 144 ~ig~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v 223 (304)
T PRK06522 144 KIGEPDGESAAAEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAV 223 (304)
T ss_pred EEeCCCCCcHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHH
Confidence 3332 22446778888998888776667788999999998864432 34578899999
Q ss_pred HHHcCCC--HHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHH
Q 021213 209 GQSLGIS--ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQ 286 (316)
Q Consensus 209 ~~~~G~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~ 286 (316)
+++.|++ .+.+.+.+...... ......++..++..|++.+-++..| .++++++++|+++|.++.++
T Consensus 224 ~~a~G~~~~~~~~~~~~~~~~~~-~~~~~sSm~~D~~~gr~tEid~i~G-----------~~v~~a~~~gv~~P~~~~l~ 291 (304)
T PRK06522 224 AEAEGVHLSVEEVREYVRQVIQK-TAANTSSMLQDLEAGRPTEIDAIVG-----------YVLRRGRKHGIPTPLNDALY 291 (304)
T ss_pred HHHcCCCCChHHHHHHHHHHhhc-cCCCCchHHHHHHcCCCcccchhcc-----------HHHHHHHHcCCCCcHHHHHH
Confidence 9999975 34444443332111 0111123445666677777777766 79999999999999999999
Q ss_pred HHHHHHHH
Q 021213 287 DIYAKLCE 294 (316)
Q Consensus 287 ~~~~~~~~ 294 (316)
++++...+
T Consensus 292 ~~~~~~~~ 299 (304)
T PRK06522 292 GLLKAKES 299 (304)
T ss_pred HHHHHHHH
Confidence 99877654
No 48
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.84 E-value=1.2e-19 Score=170.27 Aligned_cols=188 Identities=19% Similarity=0.222 Sum_probs=142.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHH-----------HHhCC-------------CCCcCCHHHHhhc
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKM-----------FSDMG-------------VPTKETPFEVAEA 61 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~-----------l~~~g-------------~~~~~~~~~~~~~ 61 (316)
.+|+|||+|.||..||.+++++||+|++||++++.++. +.+.| +..++++++ +++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 68999999999999999999999999999999998766 34455 466778766 569
Q ss_pred CCEEEEeCCCChhhHHHHhc-CCCCcccCCCCCCCeEE-EEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEe-ccC
Q 021213 62 SDVVITMLPSSSHQVLDVYN-GPNGLLQGGNSVRPQLL-IDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APV 138 (316)
Q Consensus 62 adivi~~vp~~~~~~~~v~~-~~~~~~~~~~~~~~~~v-i~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~p~ 138 (316)
||+||.|+|++.+ ++..+. ++..+. +++.++ .|+||.++. .+++.+.+. .+.. |.||++ +|+
T Consensus 87 aDlViEav~E~~~-vK~~vf~~l~~~~-----~~~ailasntStl~i~---~la~~~~~p--~r~~----G~hff~Pa~v 151 (507)
T PRK08268 87 CDLVVEAIVERLD-VKQALFAQLEAIV-----SPDCILATNTSSLSIT---AIAAALKHP--ERVA----GLHFFNPVPL 151 (507)
T ss_pred CCEEEEcCcccHH-HHHHHHHHHHhhC-----CCCcEEEECCCCCCHH---HHHhhcCCc--ccEE----EEeecCCccc
Confidence 9999999999988 777654 333333 244565 488888886 344444321 1122 379998 565
Q ss_pred CCChHhhhcCceEEEec---CCHHHHHHHHHHHHhcCCCeEeeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 021213 139 SGGVLAAEAGTLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGI 214 (316)
Q Consensus 139 ~~~~~~~~~g~~~~~~~---~~~~~~~~v~~ll~~~g~~v~~~g~-~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~ 214 (316)
+ .++.+++ ++++.++++.++++.+|+.++++++ .| ++.|.+.. ..++|++.++++.++
T Consensus 152 ~---------~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pG------fi~Nrll~---~~~~Ea~~l~~~g~~ 213 (507)
T PRK08268 152 M---------KLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPG------FIVNRAAR---PYYTEALRVLEEGVA 213 (507)
T ss_pred C---------eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCC------hHHHHHHH---HHHHHHHHHHHcCCC
Confidence 5 2466665 4899999999999999999999987 45 34565443 378899999999999
Q ss_pred CHHHHHHHHhhcc
Q 021213 215 SASTLTKILNSSS 227 (316)
Q Consensus 215 ~~~~~~~~~~~~~ 227 (316)
+++++.+++..+.
T Consensus 214 ~~~~iD~al~~~~ 226 (507)
T PRK08268 214 DPATIDAILREAA 226 (507)
T ss_pred CHHHHHHHHHhcC
Confidence 9999999987643
No 49
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.84 E-value=6e-19 Score=154.23 Aligned_cols=192 Identities=18% Similarity=0.288 Sum_probs=141.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC--eEEEEeCChhHHHHHHhCCCC-CcCCHHHHhhcCCEEEEeCCCChhhHHHHhcC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGVP-TKETPFEVAEASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~ 82 (316)
|||+|||+|.||.+++..|.++|+ +|++|||++++.+.+.+.|+. .+.+++++. ++|+||+|+|.+. +.+++.+
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~--~~~~~~~ 77 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDA--IIEILPK 77 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHH--HHHHHHH
Confidence 589999999999999999999996 799999999998888887764 455777765 5999999999766 5777766
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEec-cCCCC----hHhh----hcCceEEE
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PVSGG----VLAA----EAGTLTFM 153 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~-p~~~~----~~~~----~~g~~~~~ 153 (316)
+.+ +. ++++|+|++++.+...+.+.+... ..|+.. |+.|+ +..+ ..+...++
T Consensus 78 l~~-l~-----~~~iv~d~gs~k~~i~~~~~~~~~-------------~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il 138 (275)
T PRK08507 78 LLD-IK-----ENTTIIDLGSTKAKIIESVPKHIR-------------KNFIAAHPMAGTENSGPKAAIKGLYEGKVVVL 138 (275)
T ss_pred Hhc-cC-----CCCEEEECccchHHHHHHHHHhcC-------------CCEEecCCcCcCchhhHHhccHHHhCCCeEEE
Confidence 654 42 456999988877665555443311 234554 88753 3322 25665666
Q ss_pred ec---CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 021213 154 VG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILN 224 (316)
Q Consensus 154 ~~---~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~ 224 (316)
+. .+++.+++++++++.+|.+++++++.+....++++++... ....++++++. .+.+++.+..+..
T Consensus 139 ~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~~~hD~~~a~vs~lph-~~a~~l~~~~~----~~~~~~~~~~~~~ 207 (275)
T PRK08507 139 CDVEKSGEKHQERAKEIFSGLGMRIVYMDAKEHDLHAAYISHLPH-IISFALANTVL----KEEDERNIFDLAG 207 (275)
T ss_pred ecCCCCCHHHHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHhHHHH-HHHHHHHHHHH----hcCChHHHHhhcc
Confidence 64 4678899999999999999999999999999999999965 44445555541 3666666655543
No 50
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.84 E-value=3.4e-19 Score=155.27 Aligned_cols=253 Identities=17% Similarity=0.193 Sum_probs=162.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC---CeEEEEeCChhHHHHHHhC-CCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG---YKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g---~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
+|+|+|||+|.||..++..|.++| ++|.+|+|++++.+.+.+. |+....+.+++++++|+||+|+|... +++++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~~--~~~v~ 79 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQV--MEEVL 79 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHHH--HHHHH
Confidence 468999999999999999999999 7899999999998888774 77777888888899999999998665 78888
Q ss_pred cCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEE-eccCCCChHhhhcCceEEEec--CC
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGTLTFMVG--GS 157 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~--~~ 157 (316)
..+.+.+ +++||.++++.+. ..+.+.++.. ..++ -.| ..+.....+...+..+ .+
T Consensus 80 ~~l~~~~-------~~~vvs~~~gi~~--~~l~~~~~~~-----------~~iv~~~P--~~p~~~~~~~~~i~~~~~~~ 137 (267)
T PRK11880 80 SELKGQL-------DKLVVSIAAGVTL--ARLERLLGAD-----------LPVVRAMP--NTPALVGAGMTALTANALVS 137 (267)
T ss_pred HHHHhhc-------CCEEEEecCCCCH--HHHHHhcCCC-----------CcEEEecC--CchHHHcCceEEEecCCCCC
Confidence 7654322 2466666665532 3455544321 1222 122 1233333444334444 37
Q ss_pred HHHHHHHHHHHHhcCCCeEeeC-Cc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCcc-cc
Q 021213 158 EDAYQAAKPLFLSMGKNTIYCG-GA--GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCW-SS 233 (316)
Q Consensus 158 ~~~~~~v~~ll~~~g~~v~~~g-~~--g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~-~~ 233 (316)
++..+.++.+|+.+|. ++++. +. ..+..+--....+.+.++. .+...+.+.|+++++..+++.....+.. ..
T Consensus 138 ~~~~~~v~~l~~~lG~-~~~~~~e~~~d~~~a~~~~~pa~~~~~~~---~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~ 213 (267)
T PRK11880 138 AEDRELVENLLSAFGK-VVWVDDEKQMDAVTAVSGSGPAYVFLFIE---ALADAGVKLGLPREQARKLAAQTVLGAAKLL 213 (267)
T ss_pred HHHHHHHHHHHHhCCe-EEEECChHhcchHHHHhcChHHHHHHHHH---HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999997 45555 32 1222221111222222232 2333477899999999888876542211 10
Q ss_pred ccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcC
Q 021213 234 DSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 296 (316)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 296 (316)
......++.+. ++...+|.+. ...++.+++.|++-.+.+++.+.++++.+.+
T Consensus 214 ~~~~~~~~~l~----~~v~tpgG~t-------~~gl~~l~~~g~~~~~~~a~~~~~~ra~~~~ 265 (267)
T PRK11880 214 LESGEHPAELR----DNVTSPGGTT-------IAALRVLEEKGLRAAVIEAVQAAAKRSKELG 265 (267)
T ss_pred HhcCCCHHHHH----HhCCCCcHHH-------HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhc
Confidence 00011111111 1222334332 3678888999999999999999999999864
No 51
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.83 E-value=1.5e-19 Score=160.96 Aligned_cols=262 Identities=13% Similarity=0.075 Sum_probs=170.8
Q ss_pred CCCCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCC-------------cCCHHHHhhcCCEEEE
Q 021213 1 MLFFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-------------KETPFEVAEASDVVIT 67 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-------------~~~~~~~~~~adivi~ 67 (316)
|-+.+|||+|||+|.||+.+|..|+++||+|+++.|++. +.+.+.|... ..+..+....+|+||+
T Consensus 1 ~~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil 78 (313)
T PRK06249 1 MDSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLV 78 (313)
T ss_pred CCCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEE
Confidence 556678999999999999999999999999999999763 4455544221 1122234568999999
Q ss_pred eCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCCh--Hhh
Q 021213 68 MLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGV--LAA 145 (316)
Q Consensus 68 ~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~--~~~ 145 (316)
|||..+ +.+++..+.+.+. ++.+++...+ ..+..+.+.+.++...+ +.++.++.+...++. ...
T Consensus 79 avK~~~--~~~~~~~l~~~~~-----~~~~iv~lqN-G~~~~e~l~~~~~~~~v------~~g~~~~~a~~~~pg~v~~~ 144 (313)
T PRK06249 79 GLKTTA--NALLAPLIPQVAA-----PDAKVLLLQN-GLGVEEQLREILPAEHL------LGGLCFICSNRVGPGVIHHL 144 (313)
T ss_pred EecCCC--hHhHHHHHhhhcC-----CCCEEEEecC-CCCcHHHHHHHCCCCcE------EEEeeeEeEecCCCeEEEEC
Confidence 999876 6777776666553 2334554443 44455667666654321 111333333332211 111
Q ss_pred hcCceEE-EecC-C-----HHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHH---------------------
Q 021213 146 EAGTLTF-MVGG-S-----EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAV--------------------- 197 (316)
Q Consensus 146 ~~g~~~~-~~~~-~-----~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~--------------------- 197 (316)
..+...+ ...+ + .+..+.+.++|+..|.++....++....|.|++.|...+.
T Consensus 145 ~~g~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l 224 (313)
T PRK06249 145 AYGRVNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRAL 224 (313)
T ss_pred CCCcEEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHH
Confidence 2233221 1122 2 4667778889999998888888899999999998864432
Q ss_pred HHHHHHHHHHHHHHcCCC-----HHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHH
Q 021213 198 SMLGVSEALTLGQSLGIS-----ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASA 272 (316)
Q Consensus 198 ~~~~~~Ea~~l~~~~G~~-----~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a 272 (316)
....+.|...++++.|++ .+.+.+....... ...++..++..|+..+-++..| .+++++
T Consensus 225 ~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~-----~~sSM~qD~~~gr~tEid~i~G-----------~vv~~a 288 (313)
T PRK06249 225 IRALMAEVIQGAAACGHTLPEGYADHMLAVTERMPD-----YRPSMYHDFEEGRPLELEAIYA-----------NPLAAA 288 (313)
T ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHhhcCCC-----CCChHHHHHHCCCcccHHHHhh-----------HHHHHH
Confidence 355788999999999986 2223333322211 1123345556666666666555 899999
Q ss_pred HHcCCCCcHHHHHHHHHHHHHH
Q 021213 273 KEVGVDCPLTSQAQDIYAKLCE 294 (316)
Q Consensus 273 ~~~g~~~p~~~~~~~~~~~~~~ 294 (316)
+++|+++|+++.++++++....
T Consensus 289 ~~~Gi~~P~~~~l~~~l~~~e~ 310 (313)
T PRK06249 289 RAAGCAMPRVEMLYQALEFLDR 310 (313)
T ss_pred HHhCCCCcHHHHHHHHHHHHHh
Confidence 9999999999999998887654
No 52
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.83 E-value=1.2e-18 Score=153.70 Aligned_cols=264 Identities=13% Similarity=0.083 Sum_probs=171.4
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----------C---------CCCCcCCHHHHhhcCCEE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------M---------GVPTKETPFEVAEASDVV 65 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~---------g~~~~~~~~~~~~~adiv 65 (316)
+||+|||+|.||..||..|+.+||+|++||++++..+.+.+ . .+..++++++++++||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 68999999999999999999999999999999886544321 2 235667888999999999
Q ss_pred EEeCCCChhhHHHHh-cCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHh
Q 021213 66 ITMLPSSSHQVLDVY-NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLA 144 (316)
Q Consensus 66 i~~vp~~~~~~~~v~-~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~ 144 (316)
|.|+|+..+ ++..+ .++..+++ ++ .++.++|++. ...++++.+.+ +.+..| .||.++|......+
T Consensus 88 iEavpE~l~-vK~~lf~~l~~~~~-----~~-aIlaSnTS~l-~~s~la~~~~~--p~R~~g----~HffnP~~~~pLVE 153 (321)
T PRK07066 88 QESAPEREA-LKLELHERISRAAK-----PD-AIIASSTSGL-LPTDFYARATH--PERCVV----GHPFNPVYLLPLVE 153 (321)
T ss_pred EECCcCCHH-HHHHHHHHHHHhCC-----CC-eEEEECCCcc-CHHHHHHhcCC--cccEEE----EecCCccccCceEE
Confidence 999999887 55544 44443332 34 5666666643 33455555432 122333 78888887766666
Q ss_pred hhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 021213 145 AEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCG-GAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 223 (316)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g-~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~ 223 (316)
...+..+ +++..+++..+++.+|+.++.+. + -.+.. .|-+. ...++|++.+.+....+++++..++
T Consensus 154 Vv~g~~T-----~~e~~~~~~~f~~~lGk~pV~v~kd-~pGFi----~NRl~---~a~~~EA~~lv~eGvas~edID~a~ 220 (321)
T PRK07066 154 VLGGERT-----APEAVDAAMGIYRALGMRPLHVRKE-VPGFI----ADRLL---EALWREALHLVNEGVATTGEIDDAI 220 (321)
T ss_pred EeCCCCC-----CHHHHHHHHHHHHHcCCEeEecCCC-CccHH----HHHHH---HHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 5555555 99999999999999999888884 4 24443 55544 3457799999999779999999998
Q ss_pred hhccCCccccccCCCCCCcccCCCCCCCCCCC-cchhhHHHHHHHHH-HHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCc
Q 021213 224 NSSSARCWSSDSYNPVPGVMEGVPASRNYGGG-FASKLMAKDLNLAL-ASAKEVGVDCPLTSQAQDIYAKLCENGHDSKD 301 (316)
Q Consensus 224 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~kd~~~~~-~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d 301 (316)
..+.+..|... .|+. ..|..+. ..+..+.+.+.-.. +..++.+. .++.....+.+....+.-+|.++
T Consensus 221 ~~g~g~r~~~~--Gpf~--------~~Dl~Gld~g~~~~~~~~g~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~ 289 (321)
T PRK07066 221 RFGAGIRWSFM--GTFL--------TYTLAGGDAGMRHFMQQFGPALELPWTKLVA-PELTDALIDRVVEGTAEQQGPRS 289 (321)
T ss_pred HhCCCCCccCc--CHHH--------HhhhcChHHHHHHHHHHhhhhhhHHHHhcCC-CcccHHHHHHHHHHHHHHcCCCC
Confidence 87766544321 2211 0111111 11233333333322 22345554 33555555555555554566666
Q ss_pred HHHHHH
Q 021213 302 FSCVFQ 307 (316)
Q Consensus 302 ~~~~~~ 307 (316)
+..+++
T Consensus 290 ~~~~~~ 295 (321)
T PRK07066 290 IKALER 295 (321)
T ss_pred HHHHHH
Confidence 655544
No 53
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=99.82 E-value=4.3e-20 Score=141.35 Aligned_cols=122 Identities=34% Similarity=0.576 Sum_probs=107.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhH
Q 021213 182 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM 261 (316)
Q Consensus 182 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (316)
|+|..+|+++|.+.+.++.+++|++.++++.|+|++++++++..+.+.||....+. +. .+..++|.++|+++.+
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~--~~----~~~~~~~~~~f~l~~~ 74 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRA--PR----MILNGDFDPGFSLDLA 74 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHH--HH----HHHTTTTCSSSBHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhh--hh----hhhcccCCccchhHhh
Confidence 78999999999999999999999999999999999999999999988887655332 21 2346789999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 021213 262 AKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 309 (316)
Q Consensus 262 ~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~ 309 (316)
.||++++.+.+++.|+|+|+.+.+.+.|+.+.++|+|++|++++++.|
T Consensus 75 ~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~ 122 (122)
T PF14833_consen 75 RKDLRLALDLAKEAGVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL 122 (122)
T ss_dssp HHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred ccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence 999999999999999999999999999999999999999999999975
No 54
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.82 E-value=1.7e-18 Score=157.04 Aligned_cols=179 Identities=17% Similarity=0.201 Sum_probs=141.7
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.++|+||| +|.||..+|..|.++||+|++|||++. +++.+++++||+||+|+|... ..+++.++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~~--~~~~~~~l 162 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIHL--TEEVIARL 162 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHHH--HHHHHHHH
Confidence 37899998 999999999999999999999998631 356777889999999999876 57777665
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEE-eccCCCChHhhhcCceEEEecC-CHHHH
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAGTLTFMVGG-SEDAY 161 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~-~~p~~~~~~~~~~g~~~~~~~~-~~~~~ 161 (316)
.+ + .++++|+|++++++.....+.+... ..|+ .+|++|+......+...++.++ +++.+
T Consensus 163 ~~-l-----~~~~iv~Dv~SvK~~~~~~~~~~~~-------------~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~ 223 (374)
T PRK11199 163 PP-L-----PEDCILVDLTSVKNAPLQAMLAAHS-------------GPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAY 223 (374)
T ss_pred hC-C-----CCCcEEEECCCccHHHHHHHHHhCC-------------CCEEeeCCCCCCCCcccCCCEEEEcCCCCchHH
Confidence 44 3 2577999999998877766665422 1355 7888887665556665666665 67788
Q ss_pred HHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 021213 162 QAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTK 221 (316)
Q Consensus 162 ~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~ 221 (316)
+++.++++.+|.+++++++.++...+++++-. .++.+++++..+++ .+.+.+.+.+
T Consensus 224 ~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshL---pH~~a~al~~~l~~-~~~~~~~~~~ 279 (374)
T PRK11199 224 QWLLEQIQVWGARLHRISAVEHDQNMAFIQAL---RHFATFAYGLHLAK-ENVDLEQLLA 279 (374)
T ss_pred HHHHHHHHHCCCEEEECCHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 99999999999999999998999999999844 66777888888876 6788776544
No 55
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.81 E-value=1e-18 Score=153.00 Aligned_cols=199 Identities=15% Similarity=0.095 Sum_probs=135.9
Q ss_pred CCCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHH-----------HHhCC-------------CCCcCCHHH
Q 021213 2 LFFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKM-----------FSDMG-------------VPTKETPFE 57 (316)
Q Consensus 2 ~~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~-----------l~~~g-------------~~~~~~~~~ 57 (316)
.....+|+|||+|.||..||..++++||+|++||++++..+. +.+.| ++.+++. +
T Consensus 2 ~~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~ 80 (286)
T PRK07819 2 SDAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-G 80 (286)
T ss_pred CCCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-H
Confidence 333358999999999999999999999999999999998765 33344 2356777 5
Q ss_pred HhhcCCEEEEeCCCChhhHHHHh-cCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEec
Q 021213 58 VAEASDVVITMLPSSSHQVLDVY-NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 136 (316)
Q Consensus 58 ~~~~adivi~~vp~~~~~~~~v~-~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 136 (316)
.+++||+||.|+|++.+ ++..+ ..++.... .++.++++.|+..|.+. ++...... .+..| .||.++
T Consensus 81 ~~~~~d~ViEav~E~~~-~K~~l~~~l~~~~~----~~~~il~snTS~~~~~~--la~~~~~~--~r~~g----~hf~~P 147 (286)
T PRK07819 81 DFADRQLVIEAVVEDEA-VKTEIFAELDKVVT----DPDAVLASNTSSIPIMK--LAAATKRP--GRVLG----LHFFNP 147 (286)
T ss_pred HhCCCCEEEEecccCHH-HHHHHHHHHHHhhC----CCCcEEEECCCCCCHHH--HHhhcCCC--ccEEE----EecCCC
Confidence 57999999999999987 66554 33333330 25567776666665543 33333221 11222 788885
Q ss_pred cCCCChHhhhcCceEEEecCCHHHHHHHHHHHH-hcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 021213 137 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFL-SMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGIS 215 (316)
Q Consensus 137 p~~~~~~~~~~g~~~~~~~~~~~~~~~v~~ll~-~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~ 215 (316)
|...+.... +...+++++.++++.+++. .+|+.++.+++ ..+.. .|-+ ....++|++.+.++.-.+
T Consensus 148 ~~~~~lvEl-----v~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d-~pGfi----~nRi---~~~~~~Ea~~ll~eGv~~ 214 (286)
T PRK07819 148 VPVLPLVEL-----VPTLVTSEATVARAEEFASDVLGKQVVRAQD-RSGFV----VNAL---LVPYLLSAIRMVESGFAT 214 (286)
T ss_pred cccCceEEE-----eCCCCCCHHHHHHHHHHHHHhCCCCceEecC-CCChH----HHHH---HHHHHHHHHHHHHhCCCC
Confidence 443333332 2233459999999999988 59999988877 23443 3443 345567999988875578
Q ss_pred HHHHHHHHhhcc
Q 021213 216 ASTLTKILNSSS 227 (316)
Q Consensus 216 ~~~~~~~~~~~~ 227 (316)
++++..++..+.
T Consensus 215 ~~dID~~~~~g~ 226 (286)
T PRK07819 215 AEDIDKAMVLGC 226 (286)
T ss_pred HHHHHHHHHhCC
Confidence 999988876544
No 56
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.81 E-value=4.5e-19 Score=155.19 Aligned_cols=174 Identities=16% Similarity=0.201 Sum_probs=130.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC-CcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-TKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
|||+|||+|.||..++..|.++||+|++||++++..+.+.+.|.. ...+..+.+++||+||+|+|... +.+++.++.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~--~~~~~~~l~ 78 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL--LLPPSEQLI 78 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH--HHHHHHHHH
Confidence 589999999999999999999999999999999998888887743 33333456789999999999765 566666554
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEe-ccCCCCh-Hhh-------hcCceEEEe-
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGV-LAA-------EAGTLTFMV- 154 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~p~~~~~-~~~-------~~g~~~~~~- 154 (316)
+.+. ++.+++|++++++...+.+.+.. ..|+. +|+.|++ ... ..+...+++
T Consensus 79 ~~l~-----~~~ii~d~~Svk~~~~~~~~~~~--------------~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p 139 (279)
T PRK07417 79 PALP-----PEAIVTDVGSVKAPIVEAWEKLH--------------PRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTP 139 (279)
T ss_pred HhCC-----CCcEEEeCcchHHHHHHHHHHhh--------------CCceeeCCcCCCCcchHHHhhHHHhCCCcEEEcc
Confidence 4432 45688999998877655544322 12454 6877654 222 234333333
Q ss_pred --cCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHH
Q 021213 155 --GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSML 200 (316)
Q Consensus 155 --~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~ 200 (316)
.++++.++.++++++.+|.+++++++.+....++++++........
T Consensus 140 ~~~~~~~~~~~v~~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~~ 187 (279)
T PRK07417 140 TENTDLNALAIVEELAVSLGSKIYTADPEEHDRAVALISHLPVMVSAA 187 (279)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHHHH
Confidence 2478899999999999999999999999999999999887665433
No 57
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.81 E-value=7.5e-19 Score=155.20 Aligned_cols=193 Identities=18% Similarity=0.228 Sum_probs=131.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHH-----------HHhCC------------CCCcCCHHHHhhcC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKM-----------FSDMG------------VPTKETPFEVAEAS 62 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~-----------l~~~g------------~~~~~~~~~~~~~a 62 (316)
+||+|||+|.||.+||..|+++|++|++||+++++++. +.+.| ....++..+++++|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 84 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA 84 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence 68999999999999999999999999999999987653 33332 12233344668999
Q ss_pred CEEEEeCCCChhhHHH-HhcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCC
Q 021213 63 DVVITMLPSSSHQVLD-VYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG 140 (316)
Q Consensus 63 divi~~vp~~~~~~~~-v~~~~~~~~~~~~~~~~~~vi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~ 140 (316)
|+||+|+|++.+ ++. ++.++...++ ++.+++ ++|+.++.. +++.+.+. .+.. +.||+++|..+
T Consensus 85 D~Vieav~e~~~-~k~~v~~~l~~~~~-----~~~il~s~tS~i~~~~---l~~~~~~~--~r~~----g~h~~~pp~~~ 149 (295)
T PLN02545 85 DFIIEAIVESED-LKKKLFSELDRICK-----PSAILASNTSSISITR---LASATQRP--QQVI----GMHFMNPPPIM 149 (295)
T ss_pred CEEEEcCccCHH-HHHHHHHHHHhhCC-----CCcEEEECCCCCCHHH---HHhhcCCC--cceE----EEeccCCcccC
Confidence 999999998776 444 4444443332 444665 677776654 44433221 0122 27888888765
Q ss_pred ChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 021213 141 GVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLT 220 (316)
Q Consensus 141 ~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~ 220 (316)
.......+. +++++.+++++++++.+|+.++++++. .+. +.|-+. ...++|++.+.+....+++++.
T Consensus 150 ~lveiv~g~-----~t~~e~~~~~~~ll~~lG~~~~~~~d~-~g~----i~nri~---~~~~~ea~~~~~~gv~~~~~iD 216 (295)
T PLN02545 150 KLVEIIRGA-----DTSDEVFDATKALAERFGKTVVCSQDY-PGF----IVNRIL---MPMINEAFYALYTGVASKEDID 216 (295)
T ss_pred ceEEEeCCC-----CCCHHHHHHHHHHHHHcCCeeEEecCc-ccH----HHHHHH---HHHHHHHHHHHHcCCCCHHHHH
Confidence 332211111 248999999999999999999888873 222 344433 3457899999888668899998
Q ss_pred HHHhhc
Q 021213 221 KILNSS 226 (316)
Q Consensus 221 ~~~~~~ 226 (316)
..+..+
T Consensus 217 ~~~~~g 222 (295)
T PLN02545 217 TGMKLG 222 (295)
T ss_pred HHHHhc
Confidence 877644
No 58
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.81 E-value=3e-18 Score=148.47 Aligned_cols=247 Identities=15% Similarity=0.152 Sum_probs=157.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCe---EEEEeCChhHHHHHHhC--CCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYK---MAVHDVNCNVMKMFSDM--GVPTKETPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~---V~~~~r~~~~~~~l~~~--g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
|||||||+|+||.++++.|.++|++ +.+|+|++++.+.+.+. +...+.++.++++++|+||+|+|. .. +.+++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p-~~-~~~vl 78 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRP-QI-AEEVL 78 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCH-HH-HHHHH
Confidence 5899999999999999999999864 58999999998888764 466778899998999999999995 44 78888
Q ss_pred cCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecCCHHH
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDA 160 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~ 160 (316)
..+. + .+++++|+++... +.+.+.+.+.... ..+...|.. +.....+. +.++.++
T Consensus 79 ~~l~--~-----~~~~~vis~~ag~--~~~~l~~~~~~~~----------~~~r~~P~~--~~a~~~g~-t~~~~~~--- 133 (258)
T PRK06476 79 RALR--F-----RPGQTVISVIAAT--DRAALLEWIGHDV----------KLVRAIPLP--FVAERKGV-TAIYPPD--- 133 (258)
T ss_pred HHhc--c-----CCCCEEEEECCCC--CHHHHHHHhCCCC----------CEEEECCCC--hhhhCCCC-eEecCCH---
Confidence 6542 1 2456777765433 3456666554311 244555652 22222233 4444443
Q ss_pred HHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCcccc--ccCCC
Q 021213 161 YQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSS--DSYNP 238 (316)
Q Consensus 161 ~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~--~~~~~ 238 (316)
+.++++|+.+|..++ +++...-..+-.+. ...+.++..+.++..++++.|+++++..+++.....++... .....
T Consensus 134 -~~~~~l~~~lG~~~~-~~~e~~~d~~~a~~-s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~ 210 (258)
T PRK06476 134 -PFVAALFDALGTAVE-CDSEEEYDLLAAAS-ALMATYFGILETATGWLEEQGLKRQKARAYLAPLFASLAQDAVRSTKT 210 (258)
T ss_pred -HHHHHHHHhcCCcEE-ECChHhccceeehh-ccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 589999999998765 44311111110001 12333345677888889999999999999888654322211 11111
Q ss_pred CCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Q 021213 239 VPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLC 293 (316)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~ 293 (316)
.|+.+ .++..+||.+.. ..++..++.|+.-.+.+++.+.++++.
T Consensus 211 ~~~~l----~~~v~spgGtT~-------~gl~~le~~~~~~~~~~a~~aa~~r~~ 254 (258)
T PRK06476 211 DFSAL----SREFSTKGGLNE-------QVLNDFSRQGGYAALTDALDRVLRRIN 254 (258)
T ss_pred CHHHH----HHhCCCCCchHH-------HHHHHHHHCChHHHHHHHHHHHHHHhh
Confidence 12222 233456665544 566777788888777777777766654
No 59
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.81 E-value=5.8e-18 Score=156.34 Aligned_cols=196 Identities=18% Similarity=0.262 Sum_probs=144.6
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHH-HhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF-SDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l-~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
|+|+||| +|.||.+++..|.++|++|++|+|++++...+ .+.|+..+++..++++++|+||+|+|.+. +.+++.++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~--~~~vl~~l 78 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINV--TEDVIKEV 78 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHH--HHHHHHHH
Confidence 5899997 89999999999999999999999998876444 44677777788888999999999999765 67777666
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEec-cCCCChHhhhcCceEEEecC---CHH
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA-PVSGGVLAAEAGTLTFMVGG---SED 159 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~-p~~~~~~~~~~g~~~~~~~~---~~~ 159 (316)
.+.++ ++++++|++++.+...+.+.+.++. +..|+.+ |++|.......+...+++.+ +.+
T Consensus 79 ~~~l~-----~~~iViDvsSvK~~~~~~l~~~~~~-----------~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~ 142 (437)
T PRK08655 79 APHVK-----EGSLLMDVTSVKERPVEAMEEYAPE-----------GVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNP 142 (437)
T ss_pred HhhCC-----CCCEEEEcccccHHHHHHHHHhcCC-----------CCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHH
Confidence 54442 5679999999988887777776542 1456654 88876555556766665543 578
Q ss_pred HHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 021213 160 AYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKIL 223 (316)
Q Consensus 160 ~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~ 223 (316)
.+++++++|+.+|.+++++++......+ .+.....++.+++.+..+ .+.|+++++...+.
T Consensus 143 ~~~~v~~ll~~~G~~v~~~~~e~HD~~~---a~vs~lph~~a~al~~~l-~~~g~~~~~~~~~a 202 (437)
T PRK08655 143 WFDKVKNFLEKEGARVIVTSPEEHDRIM---SVVQGLTHFAYISIASTL-KRLGVDIKESRKFA 202 (437)
T ss_pred HHHHHHHHHHHcCCEEEECCHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHcCCCHHHHHhhc
Confidence 8899999999999998888775444444 333333444444454443 66799987765543
No 60
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.81 E-value=1.9e-18 Score=161.71 Aligned_cols=188 Identities=19% Similarity=0.216 Sum_probs=138.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHH-----------HhCC-------------CCCcCCHHHHhh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMG-------------VPTKETPFEVAE 60 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l-----------~~~g-------------~~~~~~~~~~~~ 60 (316)
.+||+|||+|.||..||.+|+++||+|++||++++.++.. .+.| ++.++++++ ++
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~ 83 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LA 83 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hC
Confidence 3689999999999999999999999999999999987643 3334 345677765 56
Q ss_pred cCCEEEEeCCCChhhHHHHhc-CCCCcccCCCCCCCeEEE--EcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEe-c
Q 021213 61 ASDVVITMLPSSSHQVLDVYN-GPNGLLQGGNSVRPQLLI--DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-A 136 (316)
Q Consensus 61 ~adivi~~vp~~~~~~~~v~~-~~~~~~~~~~~~~~~~vi--~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~ 136 (316)
+||+||.|+|++.+ ++..+. ++..+.+ ++ .++ |+|+.++. .+++.+.+. .+.. |.||++ +
T Consensus 84 ~aDlVIEav~E~~~-vK~~vf~~l~~~~~-----~~-~IlasnTStl~i~---~iA~~~~~p--~r~~----G~HFf~Pa 147 (503)
T TIGR02279 84 DAGLVIEAIVENLE-VKKALFAQLEELCP-----AD-TIIASNTSSLSIT---AIAAGLARP--ERVA----GLHFFNPA 147 (503)
T ss_pred CCCEEEEcCcCcHH-HHHHHHHHHHhhCC-----CC-eEEEECCCCCCHH---HHHHhcCcc--cceE----EEeccCcc
Confidence 99999999999877 666543 3333332 33 445 45555553 444444321 1123 379999 5
Q ss_pred cCCCChHhhhcCceEEEecC---CHHHHHHHHHHHHhcCCCeEeeCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 021213 137 PVSGGVLAAEAGTLTFMVGG---SEDAYQAAKPLFLSMGKNTIYCGG-AGNGAAAKICNNLTMAVSMLGVSEALTLGQSL 212 (316)
Q Consensus 137 p~~~~~~~~~~g~~~~~~~~---~~~~~~~v~~ll~~~g~~v~~~g~-~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~ 212 (316)
|++. ++.++++ +++.++++.++++.+|+.++++++ .|. +.|.+. ...++|++.++++.
T Consensus 148 pv~~---------LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pGf------i~Nrl~---~~~~~EA~~l~e~g 209 (503)
T TIGR02279 148 PVMA---------LVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPGF------IVNRVA---RPYYAEALRALEEQ 209 (503)
T ss_pred ccCc---------eEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCCc------HHHHHH---HHHHHHHHHHHHcC
Confidence 5552 4666776 999999999999999999999987 442 455444 35788999999999
Q ss_pred CCCHHHHHHHHhhcc
Q 021213 213 GISASTLTKILNSSS 227 (316)
Q Consensus 213 G~~~~~~~~~~~~~~ 227 (316)
+++++++.+++..+.
T Consensus 210 ~a~~~~ID~al~~~~ 224 (503)
T TIGR02279 210 VAAPAVLDAALRDGA 224 (503)
T ss_pred CCCHHHHHHHHHhcC
Confidence 999999999987643
No 61
>PRK07680 late competence protein ComER; Validated
Probab=99.80 E-value=5.4e-18 Score=148.06 Aligned_cols=196 Identities=17% Similarity=0.231 Sum_probs=133.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC----eEEEEeCChhHHHHHHhC--CCCCcCCHHHHhhcCCEEEEeCCCChhhHHHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY----KMAVHDVNCNVMKMFSDM--GVPTKETPFEVAEASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~----~V~~~~r~~~~~~~l~~~--g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v 79 (316)
|+|+|||+|+||.+++..|.++|+ +|++|+|++++.+.+.+. |+....++.++++++|+||+|+|... +.++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~~--~~~v 78 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPLD--IYPL 78 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHHH--HHHH
Confidence 589999999999999999999984 799999999988877663 66677888888899999999998544 7888
Q ss_pred hcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEec--CC
Q 021213 80 YNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG--GS 157 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~--~~ 157 (316)
+..+.+.+. ++++||+++++. +.+.+.+.++... ..++ |- .+.....|...+..+ .+
T Consensus 79 l~~l~~~l~-----~~~~iis~~ag~--~~~~L~~~~~~~~----------~r~~--p~--~~~~~~~G~t~~~~g~~~~ 137 (273)
T PRK07680 79 LQKLAPHLT-----DEHCLVSITSPI--SVEQLETLVPCQV----------ARII--PS--ITNRALSGASLFTFGSRCS 137 (273)
T ss_pred HHHHHhhcC-----CCCEEEEECCCC--CHHHHHHHcCCCE----------EEEC--CC--hHHHHhhccEEEeeCCCCC
Confidence 876655442 346888888754 3456666544210 2222 21 223344666555555 36
Q ss_pred HHHHHHHHHHHHhcCCCeEeeCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc
Q 021213 158 EDAYQAAKPLFLSMGKNTIYCGGA--GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 227 (316)
Q Consensus 158 ~~~~~~v~~ll~~~g~~v~~~g~~--g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~ 227 (316)
++..+.++++|+.+|. ++++.+. .....+--+...+.+.++.++.++. .++.|+++++..+++....
T Consensus 138 ~~~~~~~~~ll~~~G~-~~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~--~~~~Gl~~~~a~~~~~~~~ 206 (273)
T PRK07680 138 EEDQQKLERLFSNIST-PLVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAA--VEETNISKEEATTLASEML 206 (273)
T ss_pred HHHHHHHHHHHHcCCC-EEEEChHhcchhhhhccchHHHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHHHH
Confidence 6788999999999996 4566541 1112221223334555555555552 2348999999988877654
No 62
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.79 E-value=2.1e-18 Score=151.70 Aligned_cols=196 Identities=15% Similarity=0.173 Sum_probs=131.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-------------------------CCCCcCCHHHHhh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-------------------------GVPTKETPFEVAE 60 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-------------------------g~~~~~~~~~~~~ 60 (316)
+||+|||+|.||..+|..|+++||+|++||++++.++.+.+. ++..+++.+++++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 689999999999999999999999999999998876554321 2335678888889
Q ss_pred cCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCC
Q 021213 61 ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS 139 (316)
Q Consensus 61 ~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~ 139 (316)
+||+||.|+|++.+..+.++.++.+.++ ++.+++ ++|+..+. .+.+.+.+ ..+..| .||.+.+..
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~-----~~~ii~sntSt~~~~---~~~~~~~~--~~r~vg----~Hf~~p~~~ 149 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAP-----EKTIFATNSSTLLPS---QFAEATGR--PEKFLA----LHFANEIWK 149 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCC-----CCCEEEECcccCCHH---HHHhhcCC--cccEEE----EcCCCCCCc
Confidence 9999999999875424566665554442 344553 55555454 33333322 111222 455554433
Q ss_pred CChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 021213 140 GGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTL 219 (316)
Q Consensus 140 ~~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~ 219 (316)
........+. ..+++.++.+.++++.+|+.++.+.....+.. .|-+. ...++|++.+.+..-.+++++
T Consensus 150 ~~lvevv~~~-----~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi----~nRi~---~~~~~ea~~l~~~g~a~~~~i 217 (287)
T PRK08293 150 NNTAEIMGHP-----GTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYI----LNSLL---VPFLSAALALWAKGVADPETI 217 (287)
T ss_pred CCeEEEeCCC-----CCCHHHHHHHHHHHHHcCCeEEEecCCCCCHh----HHHHH---HHHHHHHHHHHHcCCCCHHHH
Confidence 2222211111 24899999999999999998888753235554 34433 345679999988866889999
Q ss_pred HHHHhhcc
Q 021213 220 TKILNSSS 227 (316)
Q Consensus 220 ~~~~~~~~ 227 (316)
..++..+.
T Consensus 218 D~a~~~~~ 225 (287)
T PRK08293 218 DKTWMIAT 225 (287)
T ss_pred HHHHHhcc
Confidence 88876554
No 63
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.79 E-value=2e-18 Score=152.88 Aligned_cols=265 Identities=14% Similarity=0.044 Sum_probs=170.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-CCCCc-----------CCHHHHhhcCCEEEEeCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTK-----------ETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~~-----------~~~~~~~~~adivi~~vp~~ 72 (316)
.|||+|+|+|.||+.++..|.++|++|++++|++++++.+++. |+... ....+....+|+||+||+..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~ 81 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY 81 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH
Confidence 5799999999999999999999999999999988888888753 32211 11112235789999999876
Q ss_pred hhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEE
Q 021213 73 SHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTF 152 (316)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~ 152 (316)
. +.+++..+.+.+. ++..++.. .+..+..+.+.+.++...+ .. +..++.+...++-.....+...+
T Consensus 82 ~--~~~al~~l~~~l~-----~~t~vv~l-QNGv~~~e~l~~~~~~~~v--~~----g~~~~ga~~~~pg~v~~~~~g~~ 147 (305)
T PRK05708 82 D--AEPAVASLAHRLA-----PGAELLLL-QNGLGSQDAVAARVPHARC--IF----ASSTEGAFRDGDWRVVFAGHGFT 147 (305)
T ss_pred h--HHHHHHHHHhhCC-----CCCEEEEE-eCCCCCHHHHHHhCCCCcE--EE----EEeeeceecCCCCEEEEeceEEE
Confidence 5 6888877766663 23344444 3344444556665543221 01 12222222211111111122123
Q ss_pred EecC-CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHcC
Q 021213 153 MVGG-SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAV------------------SMLGVSEALTLGQSLG 213 (316)
Q Consensus 153 ~~~~-~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~------------------~~~~~~Ea~~l~~~~G 213 (316)
.+|. +.+..+++.++|+..|.++.+..++....|.|++.|...+. ....+.|...++++.|
T Consensus 148 ~~G~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G 227 (305)
T PRK05708 148 WLGDPRNPTAPAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCG 227 (305)
T ss_pred EEcCCCCcchHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcC
Confidence 3442 33445678888888887777777888999999998865432 3456789999999999
Q ss_pred CC--HHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 021213 214 IS--ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 291 (316)
Q Consensus 214 ~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 291 (316)
++ ++.+.+.+...... ......++..++.+|++.+-++..| .++++++++|+++|.++.++++++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~-~~~~~sSM~qD~~~gR~tEid~i~G-----------~vvr~a~~~Gv~~P~~~~l~~~v~~ 295 (305)
T PRK05708 228 QPAAAANLHEEVQRVIQA-TAANYSSMYQDVRAGRRTEISYLLG-----------YACRAADRHGLPLPRLQHLQQRLVA 295 (305)
T ss_pred CCccHHHHHHHHHHHHHh-ccCCCcHHHHHHHcCCceeehhhhh-----------HHHHHHHHcCCCCchHHHHHHHHHH
Confidence 75 33333332211100 0011123456677788888888777 7999999999999999999988887
Q ss_pred HHHc
Q 021213 292 LCEN 295 (316)
Q Consensus 292 ~~~~ 295 (316)
....
T Consensus 296 ~~~~ 299 (305)
T PRK05708 296 HLRA 299 (305)
T ss_pred HHHh
Confidence 7664
No 64
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.79 E-value=4.1e-18 Score=150.26 Aligned_cols=195 Identities=19% Similarity=0.208 Sum_probs=130.8
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----------CC-------------CCCcCCHHHH
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG-------------VPTKETPFEV 58 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~g-------------~~~~~~~~~~ 58 (316)
|+.+||+|||+|.||..||..|+++|++|++||+++++++.+.+ .| +..+++.+ .
T Consensus 2 ~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~ 80 (292)
T PRK07530 2 MAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-D 80 (292)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-H
Confidence 34579999999999999999999999999999999988765432 23 34456664 5
Q ss_pred hhcCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEec-
Q 021213 59 AEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA- 136 (316)
Q Consensus 59 ~~~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~- 136 (316)
+++||+||+|+|++.+..+.++.++.+.++ ++++++ ++|+..+. .+++.+.+. .+.. +.||++.
T Consensus 81 ~~~aD~Vieavpe~~~~k~~~~~~l~~~~~-----~~~ii~s~ts~~~~s---~la~~~~~~--~r~~----g~h~~~p~ 146 (292)
T PRK07530 81 LADCDLVIEAATEDETVKRKIFAQLCPVLK-----PEAILATNTSSISIT---RLASATDRP--ERFI----GIHFMNPV 146 (292)
T ss_pred hcCCCEEEEcCcCCHHHHHHHHHHHHhhCC-----CCcEEEEcCCCCCHH---HHHhhcCCc--ccEE----EeeccCCc
Confidence 789999999999875513445555444442 445665 55655543 455554321 0112 2677773
Q ss_pred cCCCChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 021213 137 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 216 (316)
Q Consensus 137 p~~~~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~ 216 (316)
|.... ..... -.+++++.++++.++++.+|+.++++++.+ -+++++++ ...++|++.+..+.-.++
T Consensus 147 ~~~~~-vei~~-----g~~t~~~~~~~~~~~~~~~gk~~v~~~d~p----g~i~nRl~----~~~~~ea~~~~~~g~~~~ 212 (292)
T PRK07530 147 PVMKL-VELIR-----GIATDEATFEAAKEFVTKLGKTITVAEDFP----AFIVNRIL----LPMINEAIYTLYEGVGSV 212 (292)
T ss_pred ccCce-EEEeC-----CCCCCHHHHHHHHHHHHHcCCeEEEecCcC----ChHHHHHH----HHHHHHHHHHHHhCCCCH
Confidence 33322 11111 124699999999999999999999888754 23334442 345679988888744588
Q ss_pred HHHHHHHhhc
Q 021213 217 STLTKILNSS 226 (316)
Q Consensus 217 ~~~~~~~~~~ 226 (316)
+++..++..+
T Consensus 213 ~~iD~~~~~g 222 (292)
T PRK07530 213 EAIDTAMKLG 222 (292)
T ss_pred HHHHHHHHhC
Confidence 9988887544
No 65
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.79 E-value=4.6e-18 Score=149.71 Aligned_cols=260 Identities=15% Similarity=0.194 Sum_probs=181.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC------------CcCCHHHHhhcCCEEEEeCCCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP------------TKETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~------------~~~~~~~~~~~adivi~~vp~~~ 73 (316)
|||.|+|+|.||+.++..|.++|++|+++.|++. ++++++.|+. .+.+..+....+|+||+++++.+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~q 79 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAYQ 79 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecccc
Confidence 7999999999999999999999999999999765 8888886622 12233345568999999998876
Q ss_pred hhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCC--ChHhhhcCceE
Q 021213 74 HQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG--GVLAAEAGTLT 151 (316)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~--~~~~~~~g~~~ 151 (316)
+++++..+.+.+. +.++|....+..+..+.+.+..++..+ .. |+.+..+-..+ .......|...
T Consensus 80 --~~~al~~l~~~~~------~~t~vl~lqNG~g~~e~l~~~~~~~~i--l~----G~~~~~a~~~~~g~v~~~g~g~~~ 145 (307)
T COG1893 80 --LEEALPSLAPLLG------PNTVVLFLQNGLGHEEELRKILPKETV--LG----GVTTHGAVREGPGHVVHTGLGDTV 145 (307)
T ss_pred --HHHHHHHhhhcCC------CCcEEEEEeCCCcHHHHHHHhCCcceE--EE----EEeeeeeEecCCceEEEecCCcEE
Confidence 7999988877774 234445555666666677777665421 11 12222222111 11112222211
Q ss_pred E--EecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Q 021213 152 F--MVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAV---------------------SMLGVSEALTL 208 (316)
Q Consensus 152 ~--~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~---------------------~~~~~~Ea~~l 208 (316)
+ +.+++++..+.+.++|+..+.++.+..++-...|.|++.|...+. ....+.|....
T Consensus 146 ig~~~~~~~~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v 225 (307)
T COG1893 146 IGELRGGRDELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAV 225 (307)
T ss_pred EccCCCCchHHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHH
Confidence 1 123355788899999999998888888888999999999976663 35577899999
Q ss_pred HHHcC--CCHH---HHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHH
Q 021213 209 GQSLG--ISAS---TLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTS 283 (316)
Q Consensus 209 ~~~~G--~~~~---~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~ 283 (316)
+.+.| ++.+ .+.......... ...++..++..+++.+-||..| .+++.++++|+++|.++
T Consensus 226 ~~~~g~~~~~~~~~~v~~~~~~~~~~----~~sSM~qDl~~gr~tEid~i~G-----------~vv~~a~~~gi~~P~~~ 290 (307)
T COG1893 226 ARAEGVELPEEVVERVLAVIRATDAE----NYSSMLQDLEKGRPTEIDAING-----------AVVRLAKKHGLATPVND 290 (307)
T ss_pred HHhccCCCCHHHHHHHHHHHHhcccc----cCchHHHHHHcCCcccHHHHhh-----------HHHHHHHHhCCCCcHHH
Confidence 99999 4553 334444333211 1123445666778888888777 79999999999999999
Q ss_pred HHHHHHHHHHHc
Q 021213 284 QAQDIYAKLCEN 295 (316)
Q Consensus 284 ~~~~~~~~~~~~ 295 (316)
.++++++.....
T Consensus 291 ~L~~lvk~~e~~ 302 (307)
T COG1893 291 TLYALLKAKEAE 302 (307)
T ss_pred HHHHHHHHHHHh
Confidence 999999887764
No 66
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.78 E-value=9.3e-18 Score=147.90 Aligned_cols=195 Identities=15% Similarity=0.187 Sum_probs=135.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh--------------CCC-------------CCcCCHHHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD--------------MGV-------------PTKETPFEV 58 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~--------------~g~-------------~~~~~~~~~ 58 (316)
+||+|||+|.||+.+|..|+++|++|++||++++.++...+ .|. ...++. +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 58999999999999999999999999999999987754221 121 233444 56
Q ss_pred hhcCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccC
Q 021213 59 AEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPV 138 (316)
Q Consensus 59 ~~~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~ 138 (316)
+++||+||+|+|.+.+..++++.++.+.++ ++++++..++.. ....+++.+... .+..| .||.+++.
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~-----~~~il~S~tsg~--~~~~la~~~~~~--~r~ig----~hf~~P~~ 149 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVS-----PETIIASNTSGI--MIAEIATALERK--DRFIG----MHWFNPAP 149 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCC-----CCeEEEEcCCCC--CHHHHHhhcCCc--ccEEE----EecCCCcc
Confidence 789999999999886524555655544442 445655433332 335666655321 11222 67887443
Q ss_pred CCChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 021213 139 SGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAST 218 (316)
Q Consensus 139 ~~~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~ 218 (316)
..+......+..+ +++.++++.++++.+|+.++++++.+.....|++.|. ++|++.+.+..-.++++
T Consensus 150 ~~~~vEv~~g~~T-----~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~--------~~ea~~~~~~g~a~~~~ 216 (291)
T PRK06035 150 VMKLIEVVRAALT-----SEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGW--------LLEAIRSFEIGIATIKD 216 (291)
T ss_pred cCccEEEeCCCCC-----CHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHH--------HHHHHHHHHcCCCCHHH
Confidence 3333445566666 9999999999999999999999987666666666664 56888888774468999
Q ss_pred HHHHHhhcc
Q 021213 219 LTKILNSSS 227 (316)
Q Consensus 219 ~~~~~~~~~ 227 (316)
+..++..+.
T Consensus 217 iD~~~~~~~ 225 (291)
T PRK06035 217 IDEMCKLAF 225 (291)
T ss_pred HHHHHhhcC
Confidence 988876543
No 67
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.78 E-value=1.5e-17 Score=144.00 Aligned_cols=249 Identities=14% Similarity=0.127 Sum_probs=163.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC----CeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG----YKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g----~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
.|||+|||+|+||++++..|.+++ .++++++|++++. +.....++.++++++|+||+|+|... +++++
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilavkp~~--~~~vl 74 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAVKPDL--AGKVL 74 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEeCHHH--HHHHH
Confidence 479999999999999999999987 3599999986542 33455678888889999999998655 89999
Q ss_pred cCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEec--CCH
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG--GSE 158 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~--~~~ 158 (316)
.++.+.+. ++.+|.++++++.++.+. .++... .. ...+++.| .....+...+..+ .++
T Consensus 75 ~~i~~~l~-----~~~iIS~~aGi~~~~l~~---~~~~~~---~v----vr~mPn~p-----~~~g~g~t~i~~~~~~~~ 134 (260)
T PTZ00431 75 LEIKPYLG-----SKLLISICGGLNLKTLEE---MVGVEA---KI----VRVMPNTP-----SLVGQGSLVFCANNNVDS 134 (260)
T ss_pred HHHHhhcc-----CCEEEEEeCCccHHHHHH---HcCCCC---eE----EEECCCch-----hHhcceeEEEEeCCCCCH
Confidence 87766543 334666777777654443 332210 00 01223333 3333344233322 256
Q ss_pred HHHHHHHHHHHhcCCCeEeeCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCcc-cccc
Q 021213 159 DAYQAAKPLFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCW-SSDS 235 (316)
Q Consensus 159 ~~~~~v~~ll~~~g~~v~~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~-~~~~ 235 (316)
+..+.++.+|+.+|.. +.+.+ ......+--+...+.+.++.++.++ +.+.|++.++..+++.+...++. ....
T Consensus 135 ~~~~~v~~l~~~~G~~-~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~---~v~~Gl~~~~a~~l~~~~~~G~a~ll~~ 210 (260)
T PTZ00431 135 TDKKKVIDIFSACGII-QEIKEKDMDIATAISGCGPAYVFLFIESLIDA---GVKNGLNRDVSKNLVLQTILGSVHMVKA 210 (260)
T ss_pred HHHHHHHHHHHhCCcE-EEEChHHcchhhhhcCCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 7789999999999985 45554 3333333333455666777777766 88999999999999888653221 1111
Q ss_pred CCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcC
Q 021213 236 YNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 296 (316)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 296 (316)
....|..+ .++..+||.+.. ..++..++.|+.--+.+++.+..+++.+.|
T Consensus 211 ~~~~~~~l----~~~v~spgG~T~-------~gl~~le~~g~~~~~~~a~~aa~~r~~~l~ 260 (260)
T PTZ00431 211 SDQPVQQL----KDDVCSPGGITI-------VGLYTLEKHAFKYTVMDAVESACQKSKSMH 260 (260)
T ss_pred cCCCHHHH----HHhCCCCChHHH-------HHHHHHHHCChHHHHHHHHHHHHHHHHhcC
Confidence 11222222 234456665544 567777889999999999999999887753
No 68
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.76 E-value=3.7e-17 Score=143.51 Aligned_cols=194 Identities=16% Similarity=0.197 Sum_probs=130.5
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHH-----------HHHhCC-------------CCCcCCHHHHhhc
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMK-----------MFSDMG-------------VPTKETPFEVAEA 61 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~-----------~l~~~g-------------~~~~~~~~~~~~~ 61 (316)
+||+|||+|.||..++..|+++|++|++||+++++++ .+.+.| +..+++.+ .+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 5899999999999999999999999999999998874 333444 23355554 4789
Q ss_pred CCEEEEeCCCChhhHH-HHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCC
Q 021213 62 SDVVITMLPSSSHQVL-DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG 140 (316)
Q Consensus 62 adivi~~vp~~~~~~~-~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~ 140 (316)
||+||+|+|.+.. ++ +++.++.+.++ +++++ .+++.+.... .+++.+.... +..+ .||.+++...
T Consensus 83 aDlVi~av~e~~~-~k~~~~~~l~~~~~-----~~~il-~s~ts~~~~~-~la~~~~~~~--r~ig----~h~~~P~~~~ 148 (282)
T PRK05808 83 ADLVIEAATENMD-LKKKIFAQLDEIAK-----PEAIL-ATNTSSLSIT-ELAAATKRPD--KVIG----MHFFNPVPVM 148 (282)
T ss_pred CCeeeecccccHH-HHHHHHHHHHhhCC-----CCcEE-EECCCCCCHH-HHHHhhCCCc--ceEE----eeccCCcccC
Confidence 9999999988765 44 67766655443 34444 3333333332 5666553211 1222 5666644332
Q ss_pred ChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 021213 141 GVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLT 220 (316)
Q Consensus 141 ~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~ 220 (316)
+......+.. .+++..+.+.++++.+|+.++++++. .+.. .|.+. ...++|+..+.++.-.+++++.
T Consensus 149 ~~vev~~g~~-----t~~e~~~~~~~l~~~lGk~pv~~~d~-~g~i----~~Ri~---~~~~~ea~~~~~~gv~~~~diD 215 (282)
T PRK05808 149 KLVEIIRGLA-----TSDATHEAVEALAKKIGKTPVEVKNA-PGFV----VNRIL---IPMINEAIFVLAEGVATAEDID 215 (282)
T ss_pred ccEEEeCCCC-----CCHHHHHHHHHHHHHcCCeeEEecCc-cChH----HHHHH---HHHHHHHHHHHHhCCCCHHHHH
Confidence 2222333332 38999999999999999999999763 3433 44433 4556799999887557899998
Q ss_pred HHHhhcc
Q 021213 221 KILNSSS 227 (316)
Q Consensus 221 ~~~~~~~ 227 (316)
..+..+.
T Consensus 216 ~~~~~g~ 222 (282)
T PRK05808 216 EGMKLGC 222 (282)
T ss_pred HHHHhCC
Confidence 8876543
No 69
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.75 E-value=6.2e-17 Score=141.36 Aligned_cols=251 Identities=12% Similarity=0.054 Sum_probs=155.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCC----CeEEEEeCCh-hHHHHHHhC--CCCCcCCHHHHhhcCCEEEEeCCCChhhHHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG----YKMAVHDVNC-NVMKMFSDM--GVPTKETPFEVAEASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g----~~V~~~~r~~-~~~~~l~~~--g~~~~~~~~~~~~~adivi~~vp~~~~~~~~ 78 (316)
++|+|||+|+||.+++..|.++| ++|.+|+|++ ++.+.+.+. +...+.+..++++++|+||+|+|.+. +++
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~~--~~~ 79 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPLA--VLP 79 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHHH--HHH
Confidence 58999999999999999999998 7899999864 445555442 23446778888899999999999654 788
Q ss_pred HhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEec--C
Q 021213 79 VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG--G 156 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~--~ 156 (316)
++.++.+.+. +++++|....+... ..+.+.++...+. ..+++.|.. ...|...+..+ -
T Consensus 80 vl~~l~~~l~-----~~~~ivS~~aGi~~--~~l~~~~~~~~vv--------R~MPN~~~~-----~g~g~t~~~~~~~~ 139 (277)
T PRK06928 80 LLKDCAPVLT-----PDRHVVSIAAGVSL--DDLLEITPGLQVS--------RLIPSLTSA-----VGVGTSLVAHAETV 139 (277)
T ss_pred HHHHHHhhcC-----CCCEEEEECCCCCH--HHHHHHcCCCCEE--------EEeCccHHH-----HhhhcEEEecCCCC
Confidence 8877655443 34567766655432 3566655431110 245555533 33444333333 2
Q ss_pred CHHHHHHHHHHHHhcCCCeEeeCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHhhccCCcccc
Q 021213 157 SEDAYQAAKPLFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSL-GISASTLTKILNSSSARCWSS 233 (316)
Q Consensus 157 ~~~~~~~v~~ll~~~g~~v~~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~-G~~~~~~~~~~~~~~~~s~~~ 233 (316)
+++..+.++.+|+.+|..+ .+.+ .....++--+...+.+.++.++.++ +.+. |+++++..+++.++..++...
T Consensus 140 ~~~~~~~v~~l~~~~G~~~-~v~E~~~d~~tal~gsgPA~~~~~~~al~~a---~~~~ggl~~~~a~~l~~~~~~G~a~l 215 (277)
T PRK06928 140 NEANKSRLEETLSHFSHVM-TIREENMDIASNLTSSSPGFIAAIFEEFAEA---AVRNSSLSDEEAFQFLNFALAGTGKL 215 (277)
T ss_pred CHHHHHHHHHHHHhCCCEE-EEchhhCceeeeeecCHHHHHHHHHHHHHHH---HHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 6778889999999999854 4443 1111111112223455556666666 7787 799999999888765322111
Q ss_pred -ccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Q 021213 234 -DSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCE 294 (316)
Q Consensus 234 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~ 294 (316)
......|..+ .++..+||.++. ..++..++ |++--+.+++.+..++..+
T Consensus 216 ~~~~~~~p~~l----~~~v~spgGtT~-------~gl~~le~-~~~~~~~~~~~~a~~r~~~ 265 (277)
T PRK06928 216 LVEEDYTFSGT----IERVATKGGITA-------EGAEVIQA-QLPQFFDELLDRTQKKYAS 265 (277)
T ss_pred HHccCCCHHHH----HHhCCCCChHHH-------HHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 1111223332 234456665554 34444454 7766677777766666655
No 70
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.74 E-value=1.5e-16 Score=136.87 Aligned_cols=199 Identities=16% Similarity=0.197 Sum_probs=134.5
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCCC----eEEEEeC-ChhHHHHHHh-CCCCCcCCHHHHhhcCCEEEEeCCCChhhH
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAGY----KMAVHDV-NCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHQV 76 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g~----~V~~~~r-~~~~~~~l~~-~g~~~~~~~~~~~~~adivi~~vp~~~~~~ 76 (316)
|.++||+|||+|+||.+++..|.++|+ ++++++| ++++.+.+.+ .++..+.+.+++++++|+||+|+|.+. .
T Consensus 2 m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~~--~ 79 (245)
T PRK07634 2 LKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPSA--H 79 (245)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHHH--H
Confidence 346899999999999999999998873 3778887 4677777765 477777888899999999999999765 6
Q ss_pred HHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEec-
Q 021213 77 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVG- 155 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~- 155 (316)
++++.++.+.+ ++++||+++.+... ..+.+.++... ......|.+ +.....+...+..+
T Consensus 80 ~~v~~~l~~~~------~~~~vis~~~gi~~--~~l~~~~~~~~----------~v~r~~Pn~--a~~v~~g~~~~~~~~ 139 (245)
T PRK07634 80 EELLAELSPLL------SNQLVVTVAAGIGP--SYLEERLPKGT----------PVAWIMPNT--AAEIGKSISLYTMGQ 139 (245)
T ss_pred HHHHHHHHhhc------cCCEEEEECCCCCH--HHHHHHcCCCC----------eEEEECCcH--HHHHhcCCeEEeeCC
Confidence 88887665433 23577777665432 24555443210 122344532 23344454333333
Q ss_pred -CCHHHHHHHHHHHHhcCCCeEeeCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcc
Q 021213 156 -GSEDAYQAAKPLFLSMGKNTIYCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSS 227 (316)
Q Consensus 156 -~~~~~~~~v~~ll~~~g~~v~~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~ 227 (316)
.+++..+.++++|+.+|..+ ++.+ .....++--+...+.+.++..+.++ +.+.|+++++..+++....
T Consensus 140 ~~~~~~~~~v~~lf~~~G~~~-~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~---~~~~Gl~~~~a~~~~~~~~ 210 (245)
T PRK07634 140 SVNETHKETLQLILKGIGTSQ-LCTEEEVHQLTAVTGSAPAFLYYFAESLIEA---TKSYGVDEETAKHLVIQMI 210 (245)
T ss_pred CCCHHHHHHHHHHHHhCCCEE-EECHHHcchHHhhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHH
Confidence 57888999999999999866 4544 2333333333444555555555555 8899999999988887654
No 71
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.72 E-value=6.8e-16 Score=139.67 Aligned_cols=195 Identities=14% Similarity=0.184 Sum_probs=136.7
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC----CcCCHHHHhhcCCEEEEeCCCChhhHHHHhc
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP----TKETPFEVAEASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~----~~~~~~~~~~~adivi~~vp~~~~~~~~v~~ 81 (316)
++|+|||+|.||++++..|.++|++|.+|+++++..+.....+.. ..++..+++++||+||+|+|... +.+++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~--~~~vl~ 78 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDA--TAALLA 78 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHH--HHHHHH
Confidence 479999999999999999999999999999988766554443332 23567788899999999999864 788887
Q ss_pred CCCCc-ccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEe-ccCCCCh--------HhhhcCceE
Q 021213 82 GPNGL-LQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGV--------LAAEAGTLT 151 (316)
Q Consensus 82 ~~~~~-~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~p~~~~~--------~~~~~g~~~ 151 (316)
++.+. + .++.++.|+++++....+.+.+.+.. +..|+. +|+.|+. .....+...
T Consensus 79 ~l~~~~l-----~~~~ivtDv~SvK~~i~~~~~~~~~~-----------~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~ 142 (359)
T PRK06545 79 ELADLEL-----KPGVIVTDVGSVKGAILAEAEALLGD-----------LIRFVGGHPMAGSHKSGVAAARADLFENAPW 142 (359)
T ss_pred HHhhcCC-----CCCcEEEeCccccHHHHHHHHHhcCC-----------CCeEEeeCCcCcCchhhHHHhcHHHHCCCcE
Confidence 76542 3 24578999999988777766654322 145666 6887653 123345444
Q ss_pred EEec---CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 021213 152 FMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS 225 (316)
Q Consensus 152 ~~~~---~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~ 225 (316)
+++. .+++.++.++++++.+|..++++++......+.++........ ++ ++...+.+.+....+...
T Consensus 143 il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia-----~a--l~~~~~~~~~~~~~la~~ 212 (359)
T PRK06545 143 VLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILA-----SS--LAARLAGEHPLALRLAAG 212 (359)
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHH-----HH--HHHhhccCchHHHhhhcc
Confidence 4543 4788999999999999998888887666666655555433322 22 255556666655555543
No 72
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.72 E-value=1.4e-15 Score=135.08 Aligned_cols=171 Identities=14% Similarity=0.223 Sum_probs=123.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC--eEEEEeCChhHHHHHHhCCC--CCcCCHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGV--PTKETPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~~g~--~~~~~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
.++|+|||+|.||..++..|.+.|+ +|++|||++++.+.+.+.|. ..+.+..++++++|+||+|+|... ..+++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~--~~~v~ 83 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGA--SGAVA 83 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHH--HHHHH
Confidence 4799999999999999999999994 89999999998888887775 345677888899999999999765 56666
Q ss_pred cCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEe-ccCCCChH--------hhhcCceE
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLD-APVSGGVL--------AAEAGTLT 151 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~-~p~~~~~~--------~~~~g~~~ 151 (316)
..+.+.++ ++.+++|+++......+.+.+.+.. +..|+. +|+.|+.. ....+...
T Consensus 84 ~~l~~~l~-----~~~iv~dvgs~k~~~~~~~~~~~~~-----------~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~ 147 (307)
T PRK07502 84 AEIAPHLK-----PGAIVTDVGSVKASVIAAMAPHLPE-----------GVHFIPGHPLAGTEHSGPDAGFAELFENRWC 147 (307)
T ss_pred HHHHhhCC-----CCCEEEeCccchHHHHHHHHHhCCC-----------CCeEEeCCCCCCCcccchhhcCHHHHCCCeE
Confidence 65544332 4568889988877666655544322 134555 48875431 11233333
Q ss_pred EEe---cCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHH
Q 021213 152 FMV---GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNL 193 (316)
Q Consensus 152 ~~~---~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~ 193 (316)
++. +++++.++.++++++.+|.+++++++......+-++...
T Consensus 148 ~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~l 192 (307)
T PRK07502 148 ILTPPEGTDPAAVARLTAFWRALGARVEEMDPEHHDLVLAITSHL 192 (307)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhH
Confidence 333 457888999999999999998888875566665555444
No 73
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.71 E-value=6.2e-17 Score=132.33 Aligned_cols=153 Identities=19% Similarity=0.261 Sum_probs=97.7
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC--------------------CCCCcCCHHHHhhcCCEE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------------------GVPTKETPFEVAEASDVV 65 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~--------------------g~~~~~~~~~~~~~adiv 65 (316)
|||+|||+|++|..+|..|+++||+|++||.++++++.+++. ...++++..++++++|++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 799999999999999999999999999999999998888752 145667888888999999
Q ss_pred EEeCCCChh--------hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEecc
Q 021213 66 ITMLPSSSH--------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAP 137 (316)
Q Consensus 66 i~~vp~~~~--------~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p 137 (316)
|+|||++.+ .+++++..+.+.++ +++++|..||..|++++++...+-+.. .+....+.+...|
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~-----~~~lvV~~STvppGtt~~~~~~ile~~----~~~~~~f~la~~P 151 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLR-----PGDLVVIESTVPPGTTEELLKPILEKR----SGKKEDFHLAYSP 151 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHC-----SCEEEEESSSSSTTHHHHHHHHHHHHH----CCTTTCEEEEE--
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHh-----hcceEEEccEEEEeeehHhhhhhhhhh----cccccCCeEEECC
Confidence 999997632 25555555544443 568999999999999996664443321 0000225677788
Q ss_pred CC---CChHhhhcCceEEEecCCHH-HHHHHHHH
Q 021213 138 VS---GGVLAAEAGTLTFMVGGSED-AYQAAKPL 167 (316)
Q Consensus 138 ~~---~~~~~~~~g~~~~~~~~~~~-~~~~v~~l 167 (316)
.+ |...........++.|.+++ ..+.++++
T Consensus 152 Erl~~G~a~~d~~~~~rvV~G~~~~~~~~~~~~l 185 (185)
T PF03721_consen 152 ERLREGRAIEDFRNPPRVVGGCDDESAEERLKEL 185 (185)
T ss_dssp ----TTSHHHHHHSSSEEEEEESSHHHHHHHHHH
T ss_pred CccCCCCcchhccCCCEEEEeCCcHHHHHHHhcC
Confidence 76 55544445555677776544 44466553
No 74
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.69 E-value=3.1e-15 Score=128.57 Aligned_cols=159 Identities=19% Similarity=0.221 Sum_probs=114.1
Q ss_pred CeEEEEccchh--------------------hHHHHHHHHhCCCeEEEEeCChhHH-----HHHHhCCCCCcCCHHHHhh
Q 021213 6 QSVGFIGLGNM--------------------GFRMASNLMKAGYKMAVHDVNCNVM-----KMFSDMGVPTKETPFEVAE 60 (316)
Q Consensus 6 ~~IgiiG~G~m--------------------G~~la~~l~~~g~~V~~~~r~~~~~-----~~l~~~g~~~~~~~~~~~~ 60 (316)
|||.|.|+|+- |.+||++|+++||+|++|||++++. +.+.+.|+..++++.++++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa 80 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAK 80 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHh
Confidence 68999999974 7899999999999999999987654 4588889999999999999
Q ss_pred cCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHH-HhhchhhhccCCCCCccEEeccCC
Q 021213 61 ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAA-VSNCILKEKKDSWENPVMLDAPVS 139 (316)
Q Consensus 61 ~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~-~~~~~~~~~~g~~~~~~~~~~p~~ 139 (316)
++|+||+|+|++.+ +++++.. +++. ..+++++||+||++|.....+-+. ++..+ +..| ...|..+.+-
T Consensus 81 ~ADVVIL~LPd~aa-V~eVl~G---Laa~--L~~GaIVID~STIsP~t~~~~~e~~l~~~r--~d~~---v~s~HP~~vP 149 (341)
T TIGR01724 81 HGEIHVLFTPFGKG-TFSIART---IIEH--VPENAVICNTCTVSPVVLYYSLEKILRLKR--TDVG---ISSMHPAAVP 149 (341)
T ss_pred CCCEEEEecCCHHH-HHHHHHH---HHhc--CCCCCEEEECCCCCHHHHHHHHHHHhhcCc--cccC---eeccCCCCCC
Confidence 99999999999877 8888743 3432 346789999999999887766554 32110 1222 1233333232
Q ss_pred CChHhhhcCceEEEec--------CCHHHHHHHHHHHHhcCCCeEeeC
Q 021213 140 GGVLAAEAGTLTFMVG--------GSEDAYQAAKPLFLSMGKNTIYCG 179 (316)
Q Consensus 140 ~~~~~~~~g~~~~~~~--------~~~~~~~~v~~ll~~~g~~v~~~g 179 (316)
+.+.. ...++.+ .++|..+++.++.++.++.++.+.
T Consensus 150 ~~~~~----~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~p 193 (341)
T TIGR01724 150 GTPQH----GHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVVP 193 (341)
T ss_pred CCCCC----ceeeeccccccccccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 22211 1111111 268899999999999999877553
No 75
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.68 E-value=1.5e-15 Score=131.81 Aligned_cols=252 Identities=15% Similarity=0.179 Sum_probs=166.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHH-----------HhCC-------------CCCcCCHHHHhh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMG-------------VPTKETPFEVAE 60 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l-----------~~~g-------------~~~~~~~~~~~~ 60 (316)
.+||+|||+|.||+.||..++.+|++|+++|++++.++.. .+.| +...++.. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 4699999999999999999999889999999997753332 2222 34444444 678
Q ss_pred cCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEc--CCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccC
Q 021213 61 ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDS--STIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPV 138 (316)
Q Consensus 61 ~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~--st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~ 138 (316)
+||+||.+++.+.+--++++.++..+.+ ++ .|+-+ |+.++. .+++.+.+ +.+..| .||.++|.
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~-----~~-aIlASNTSsl~it---~ia~~~~r--per~iG----~HFfNP~~ 146 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAK-----PD-AILASNTSSLSIT---ELAEALKR--PERFIG----LHFFNPVP 146 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcC-----CC-cEEeeccCCCCHH---HHHHHhCC--chhEEE----EeccCCCC
Confidence 9999999999987733456666665553 22 44433 333443 44444422 223444 89999988
Q ss_pred CCChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 021213 139 SGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAST 218 (316)
Q Consensus 139 ~~~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~ 218 (316)
.....+...|..+ +++.++++.++.+.+|+.++...+. .+.. .|-+. ...+.|+..+......++++
T Consensus 147 ~m~LVEvI~g~~T-----~~e~~~~~~~~~~~igK~~vv~~D~-pGFi----~NRil---~~~~~eA~~l~~eGva~~e~ 213 (307)
T COG1250 147 LMPLVEVIRGEKT-----SDETVERVVEFAKKIGKTPVVVKDV-PGFI----VNRLL---AALLNEAIRLLEEGVATPEE 213 (307)
T ss_pred cceeEEEecCCCC-----CHHHHHHHHHHHHHcCCCCEeecCC-Ccee----hHhHH---HHHHHHHHHHHHhCCCCHHH
Confidence 7766666667766 9999999999999999887555552 4444 45433 34567999999887799999
Q ss_pred HHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcC-----CCCcHHHHHHHHHHHHH
Q 021213 219 LTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVG-----VDCPLTSQAQDIYAKLC 293 (316)
Q Consensus 219 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g-----~~~p~~~~~~~~~~~~~ 293 (316)
+..++..+.+.. . .|+ .+ .|+.+ ++.+.+-+....+ ..+ .+.|+.+...+.-+.+.
T Consensus 214 ID~~~~~~~G~p-m----Gpf--~l------~D~~G---lD~~~~i~~~~~~---~~~~~~~~~~~~~~~~~v~~g~lG~ 274 (307)
T COG1250 214 IDAAMRQGLGLP-M----GPF--EL------ADLIG---LDVMLHIMKVLNE---TLGDDPYYRPPPLLRKLVEAGRLGR 274 (307)
T ss_pred HHHHHHhccCCC-c----cHH--HH------HHHHh---HHHHHHHHHHHHH---hcCCCccccccHHHHHHHhcccccc
Confidence 999998765421 1 111 00 11111 2222222222222 333 34577777777777777
Q ss_pred HcCCCCCcHHH
Q 021213 294 ENGHDSKDFSC 304 (316)
Q Consensus 294 ~~g~g~~d~~~ 304 (316)
+.|.|.-||..
T Consensus 275 Ksg~GfY~y~~ 285 (307)
T COG1250 275 KSGKGFYDYRG 285 (307)
T ss_pred cCCCcceeccc
Confidence 88888888864
No 76
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.66 E-value=1.3e-15 Score=134.93 Aligned_cols=186 Identities=14% Similarity=0.157 Sum_probs=130.2
Q ss_pred hhHHHHHHHHhCCCeEEEEeCChhH-------HH-----------HHHhCC-------------CCCcCC--HHHHhhcC
Q 021213 16 MGFRMASNLMKAGYKMAVHDVNCNV-------MK-----------MFSDMG-------------VPTKET--PFEVAEAS 62 (316)
Q Consensus 16 mG~~la~~l~~~g~~V~~~~r~~~~-------~~-----------~l~~~g-------------~~~~~~--~~~~~~~a 62 (316)
||..||..++.+|++|++||++++. ++ .+.+.| ++.+++ +.+++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 8999999999999999999999842 11 112222 333333 66888999
Q ss_pred CEEEEeCCCChhhHHHHh-cCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCC
Q 021213 63 DVVITMLPSSSHQVLDVY-NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG 141 (316)
Q Consensus 63 divi~~vp~~~~~~~~v~-~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~ 141 (316)
|+||.|+|++.+ ++..+ .++...+ .++.++ +|++++.....+++.+.+. .+..| .||.++|....
T Consensus 81 D~ViEav~E~~~-~K~~~f~~l~~~~-----~~~~il--aSntS~~~~~~la~~~~~p--~r~~g----~Hf~~Pp~~~~ 146 (314)
T PRK08269 81 DLVFEAVPEVLD-AKREALRWLGRHV-----DADAII--ASTTSTFLVTDLQRHVAHP--ERFLN----AHWLNPAYLMP 146 (314)
T ss_pred CEEEECCcCCHH-HHHHHHHHHHhhC-----CCCcEE--EEccccCCHHHHHhhcCCc--ccEEE----EecCCccccCc
Confidence 999999999887 66554 3333333 244444 4555555556777766421 12333 89999996544
Q ss_pred hHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 021213 142 VLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTK 221 (316)
Q Consensus 142 ~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~ 221 (316)
......+.. ++++.++++.++++.+|+.++++++.+ +. +........++|++.++++.+++++++..
T Consensus 147 lvEVv~g~~-----t~~e~~~~~~~ll~~lGk~~v~v~d~~-Gf-------i~nri~~~~l~EAl~l~e~g~~~~e~iD~ 213 (314)
T PRK08269 147 LVEVSPSDA-----TDPAVVDRLAALLERIGKVPVVCGPSP-GY-------IVPRIQALAMNEAARMVEEGVASAEDIDK 213 (314)
T ss_pred eEEEeCCCC-----CCHHHHHHHHHHHHHcCCcEEEecCCC-Cc-------chHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 443333332 399999999999999999999999854 32 23345567788999999999999999999
Q ss_pred HHhhccC
Q 021213 222 ILNSSSA 228 (316)
Q Consensus 222 ~~~~~~~ 228 (316)
++..+.+
T Consensus 214 a~~~g~G 220 (314)
T PRK08269 214 AIRTGFG 220 (314)
T ss_pred HHHhCCC
Confidence 9876654
No 77
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.66 E-value=1.6e-15 Score=128.08 Aligned_cols=165 Identities=21% Similarity=0.248 Sum_probs=112.2
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC--------CCC---CcCCHHHHhhcCCEEEEeCCCCh
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--------GVP---TKETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~--------g~~---~~~~~~~~~~~adivi~~vp~~~ 73 (316)
|||+||| +|+||++++..|+++||+|++|+|++++.+.+.+. |.. ...+..++++++|+||+|+|.+.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~ 80 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH 80 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence 6899997 89999999999999999999999999888766542 221 12466788899999999999765
Q ss_pred hhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHH---------------HHHHHHHHHhh-chhhhccCCCCCccEEecc
Q 021213 74 HQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ---------------TSRNISAAVSN-CILKEKKDSWENPVMLDAP 137 (316)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~---------------~~~~l~~~~~~-~~~~~~~g~~~~~~~~~~p 137 (316)
+.+++.++.+.+ +++++|++++.... ..+.+++.++. ..+.+ .|.+.+
T Consensus 81 --~~~~l~~l~~~l------~~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVk--------a~~~~~ 144 (219)
T TIGR01915 81 --VLKTLESLRDEL------SGKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVA--------AFHNLS 144 (219)
T ss_pred --HHHHHHHHHHhc------cCCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEee--------ccccCC
Confidence 677776554333 23688888765432 12445555443 22111 122222
Q ss_pred --CCCChHhhhcCceEEEecCCHHHHHHHHHHHHhc-CCCeEeeCCcchHHHH
Q 021213 138 --VSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSM-GKNTIYCGGAGNGAAA 187 (316)
Q Consensus 138 --~~~~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~-g~~v~~~g~~g~a~~~ 187 (316)
+..+. ....+...+++|.|+++.+.+.++.+.+ |..++.+|....+..+
T Consensus 145 a~~~~~~-~~~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~~a~~~ 196 (219)
T TIGR01915 145 AVLLQDV-DDEVDCDVLVCGDDEEAKEVVAELAGRIDGLRALDAGPLENAAIV 196 (219)
T ss_pred HHHhcCC-CCCCCCCEEEECCCHHHHHHHHHHHHhcCCCCcccCCchhhHHHH
Confidence 22221 1222344567777788899999999999 9999989886555443
No 78
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.65 E-value=1.7e-16 Score=126.89 Aligned_cols=141 Identities=18% Similarity=0.265 Sum_probs=99.0
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC--------------CCCcCCHHHHhhcCCEEEEeCCCC
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG--------------VPTKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g--------------~~~~~~~~~~~~~adivi~~vp~~ 72 (316)
||+|||+|+||+++|..|+++||+|++|.|+++.++.+++.+ +..+++++++++++|+||+++|..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 799999999999999999999999999999999998888633 345678999999999999999987
Q ss_pred hhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCC-HHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceE
Q 021213 73 SHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID-PQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLT 151 (316)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~-~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~ 151 (316)
. .++++.++.++++ +++.+|.++.+. +++...+.+.+.+.... +.+.++.+|.+.........+..
T Consensus 81 ~--~~~~~~~l~~~l~-----~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~------~~~~~lsGP~~A~Ei~~~~pt~~ 147 (157)
T PF01210_consen 81 A--HREVLEQLAPYLK-----KGQIIISATKGFEPGTLLLLSEVIEEILPI------PRIAVLSGPSFAEEIAEGKPTAV 147 (157)
T ss_dssp G--HHHHHHHHTTTSH-----TT-EEEETS-SEETTEEEEHHHHHHHHHSS------CGEEEEESS--HHHHHTT--EEE
T ss_pred H--HHHHHHHHhhccC-----CCCEEEEecCCcccCCCccHHHHHHHHhhh------cceEEeeCccHHHHHHcCCCeEE
Confidence 7 6999998888774 456777777654 44444455554432110 01567888887655555556656
Q ss_pred EEecCCHHH
Q 021213 152 FMVGGSEDA 160 (316)
Q Consensus 152 ~~~~~~~~~ 160 (316)
++++.+.+.
T Consensus 148 ~~as~~~~~ 156 (157)
T PF01210_consen 148 VIASKNEEV 156 (157)
T ss_dssp EEEESSHHH
T ss_pred EEEeccccc
Confidence 666666653
No 79
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=99.65 E-value=1.4e-14 Score=122.73 Aligned_cols=259 Identities=14% Similarity=0.154 Sum_probs=182.2
Q ss_pred CeEEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHHHHHHhC-------------------CCCCcCCHHHHhhcCCE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDM-------------------GVPTKETPFEVAEASDV 64 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~~-------------------g~~~~~~~~~~~~~adi 64 (316)
+||+.||+|++|.+-...++-.- .+|+++|.+..++..++.. ..-+.++.+.+++++|+
T Consensus 2 ~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~eadl 81 (481)
T KOG2666|consen 2 VKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEADL 81 (481)
T ss_pred ceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcce
Confidence 58999999999999888776554 4688999998877665432 24456788899999999
Q ss_pred EEEeCCCChh-------------hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCc
Q 021213 65 VITMLPSSSH-------------QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENP 131 (316)
Q Consensus 65 vi~~vp~~~~-------------~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 131 (316)
||+.|.++.. +.++..+.+.+.. ...++++.-||++....+.+...+..... .. .+
T Consensus 82 vfisvntptkt~g~gkg~aadlky~es~ar~ia~~s-----~~~kivvekstvpv~aaesi~~il~~n~~--~i----~f 150 (481)
T KOG2666|consen 82 VFISVNTPTKTYGLGKGKAADLKYWESAARMIADVS-----VSDKIVVEKSTVPVKAAESIEKILNHNSK--GI----KF 150 (481)
T ss_pred EEEEecCCcccccCCCCcccchhHHHHHHHHHHHhc-----cCCeEEEeeccccchHHHHHHHHHhcCCC--Cc----ee
Confidence 9998654321 2333333332222 24579999999999999999888853221 11 14
Q ss_pred cEEeccCC---CChHhhhcCceEEEecCC--HH---HHHHHHHHHHhcC-CCeEeeCCcchHHHHHHHHHHHHHHHHHHH
Q 021213 132 VMLDAPVS---GGVLAAEAGTLTFMVGGS--ED---AYQAAKPLFLSMG-KNTIYCGGAGNGAAAKICNNLTMAVSMLGV 202 (316)
Q Consensus 132 ~~~~~p~~---~~~~~~~~g~~~~~~~~~--~~---~~~~v~~ll~~~g-~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~ 202 (316)
.+++.|.+ |........+..+++||. +| +.+.+..+++.|- ..-+.+...++++..|++.|+|++.-+..+
T Consensus 151 qilsnpeflaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissi 230 (481)
T KOG2666|consen 151 QILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSI 230 (481)
T ss_pred EeccChHHhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhh
Confidence 56677766 444444445557777763 33 4555666677663 333456667999999999999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCC--Cc
Q 021213 203 SEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVD--CP 280 (316)
Q Consensus 203 ~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~--~p 280 (316)
+-+.++|++.|.|..++...++.... . .+.++ ..+.||+..+..||.-.++.+|+.+|+| ..
T Consensus 231 ns~salceatgadv~eva~avg~d~r---i------g~kfl-------~asvgfggscfqkdilnlvyice~lnlpeva~ 294 (481)
T KOG2666|consen 231 NSMSALCEATGADVSEVAYAVGTDSR---I------GSKFL-------NASVGFGGSCFQKDILNLVYICECLNLPEVAE 294 (481)
T ss_pred HHHHHHHHhcCCCHHHHHHHhccccc---c------cHHHh-------hcccCcCchhHHHHHHHHHHHHhcCCChHHHH
Confidence 99999999999999999888765321 1 11122 2356788899999999999999999987 34
Q ss_pred HHHHHHHHHHH
Q 021213 281 LTSQAQDIYAK 291 (316)
Q Consensus 281 ~~~~~~~~~~~ 291 (316)
..+.+.++.+.
T Consensus 295 ywqqvi~~ndy 305 (481)
T KOG2666|consen 295 YWQQVIKINDY 305 (481)
T ss_pred HHHHHhhhhHH
Confidence 44455444433
No 80
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.64 E-value=3e-15 Score=121.49 Aligned_cols=169 Identities=18% Similarity=0.230 Sum_probs=114.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCC-hhHHHHHHh-CCC-CCcCCHHHHhhcCCEEEEeCCCChhhHHHHhc
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVN-CNVMKMFSD-MGV-PTKETPFEVAEASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~-~~~~~~l~~-~g~-~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~ 81 (316)
+|+|+|+|.|++|.+++.+|+++||+|++-+|+ +++.+...+ .+. ....+++++.+.+|+||++||-.. +.+++.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a--~~~v~~ 78 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEA--IPDVLA 78 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHH--HHhHHH
Confidence 368999999999999999999999999998654 444444443 232 234678899999999999999765 677776
Q ss_pred CCCCcccCCCCCCCeEEEEcCCC---------------CHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhh
Q 021213 82 GPNGLLQGGNSVRPQLLIDSSTI---------------DPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAE 146 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st~---------------~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~ 146 (316)
+++..+ +++++||++.- ..+.++.+++.++...+.+. ++-+.+..+.......
T Consensus 79 ~l~~~~------~~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkA------Fn~i~a~~l~~~~~~~ 146 (211)
T COG2085 79 ELRDAL------GGKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKA------FNTIPAAVLADLAKPG 146 (211)
T ss_pred HHHHHh------CCeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhh------hcccCHHHhccCCCcC
Confidence 654433 56799998874 22344556666665433222 2222222221111111
Q ss_pred cCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHH
Q 021213 147 AGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAA 187 (316)
Q Consensus 147 ~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~ 187 (316)
.....+++|.|.++.+.+.++.+.+|...+-+|....+..+
T Consensus 147 ~~~~v~vagDD~~Ak~~v~~L~~~iG~~~ld~G~L~~a~~l 187 (211)
T COG2085 147 GRRDVLVAGDDAEAKAVVAELAEDIGFRPLDAGPLENARIL 187 (211)
T ss_pred CceeEEEecCcHHHHHHHHHHHHhcCcceeecccccccccc
Confidence 33445677778889999999999999998888886555443
No 81
>PLN02256 arogenate dehydrogenase
Probab=99.64 E-value=2.7e-14 Score=125.74 Aligned_cols=167 Identities=18% Similarity=0.206 Sum_probs=119.1
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHh-hcCCEEEEeCCCChhhHHHHhcC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA-EASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~adivi~~vp~~~~~~~~v~~~ 82 (316)
..|+|+|||+|.||..++..|.+.|++|++|++++. .+...+.|+....+.++++ .++|+||+|+|... +.+++.+
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~~--~~~vl~~ 111 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY-SDIAAELGVSFFRDPDDFCEEHPDVVLLCTSILS--TEAVLRS 111 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH-HHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHHH--HHHHHHh
Confidence 357999999999999999999999999999999864 3444556777777888876 47999999999764 7888876
Q ss_pred C-CCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHh--hhcCceEEEe-----
Q 021213 83 P-NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLA--AEAGTLTFMV----- 154 (316)
Q Consensus 83 ~-~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~--~~~g~~~~~~----- 154 (316)
+ .+.+ .++.+++|.++++....+.+.+.++... ..+-.+|++|.... ...+...+..
T Consensus 112 l~~~~l-----~~~~iviDv~SvK~~~~~~~~~~l~~~~----------~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~ 176 (304)
T PLN02256 112 LPLQRL-----KRSTLFVDVLSVKEFPKNLLLQVLPEEF----------DILCTHPMFGPESGKGGWAGLPFVYDKVRIG 176 (304)
T ss_pred hhhhcc-----CCCCEEEecCCchHHHHHHHHHhCCCCC----------eEEecCCCCCCCCCccccCCCeEEEecceec
Confidence 5 2333 2557999999987766677766554310 13344677755432 2233322222
Q ss_pred --cCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHH
Q 021213 155 --GGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK 188 (316)
Q Consensus 155 --~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k 188 (316)
..+++..+.++++++.+|.+++.+.....-..+-
T Consensus 177 ~~~~~~~~~~~l~~l~~~lGa~v~~~~~eeHD~~vA 212 (304)
T PLN02256 177 DEGEREARCERFLDIFEEEGCRMVEMSCEEHDRYAA 212 (304)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEeCHHHHhHHHH
Confidence 1267788999999999999998887755555544
No 82
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.60 E-value=9.1e-14 Score=120.23 Aligned_cols=173 Identities=17% Similarity=0.247 Sum_probs=125.0
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh--HHHHHHhCCCCCc--CCH-HHHhhcCCEEEEeCCCChhhHHH
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN--VMKMFSDMGVPTK--ETP-FEVAEASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~--~~~~l~~~g~~~~--~~~-~~~~~~adivi~~vp~~~~~~~~ 78 (316)
+.++|+|+|+|.||..+++.|.++|+.|.+|+++.+ ..+...+.|+.-. .+. .+....+|+||+|||-.. +.+
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~--~~~ 79 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEA--TEE 79 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHH--HHH
Confidence 357999999999999999999999999877766544 4444444565432 233 567778999999999766 688
Q ss_pred HhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCC--hHhhhcCceEEEecC
Q 021213 79 VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG--VLAAEAGTLTFMVGG 156 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~--~~~~~~g~~~~~~~~ 156 (316)
++.++.+.+ +++.+++|.++.+....+.+.+..++.. .....+|++|+ ......+...++.-.
T Consensus 80 ~l~~l~~~l-----~~g~iv~Dv~S~K~~v~~a~~~~~~~~~----------~~vg~HPM~G~~~~~~lf~~~~~vltp~ 144 (279)
T COG0287 80 VLKELAPHL-----KKGAIVTDVGSVKSSVVEAMEKYLPGDV----------RFVGGHPMFGPEADAGLFENAVVVLTPS 144 (279)
T ss_pred HHHHhcccC-----CCCCEEEecccccHHHHHHHHHhccCCC----------eeEecCCCCCCcccccccCCCEEEEcCC
Confidence 887776544 3678999999999888888777664411 13345788887 445555664554432
Q ss_pred ---CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHH
Q 021213 157 ---SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNL 193 (316)
Q Consensus 157 ---~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~ 193 (316)
+.+..+++.++++..|.+++++.....-..+-.++-.
T Consensus 145 ~~~~~~~~~~~~~~~~~~ga~~v~~~~eeHD~~~a~vshL 184 (279)
T COG0287 145 EGTEKEWVEEVKRLWEALGARLVEMDAEEHDRVMAAVSHL 184 (279)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEcChHHHhHHHHHHHHH
Confidence 4668899999999999988888876666665444444
No 83
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.59 E-value=2.4e-15 Score=122.64 Aligned_cols=154 Identities=19% Similarity=0.312 Sum_probs=99.5
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH-----------hCC-------------CCCcCCHHHHhhcC
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS-----------DMG-------------VPTKETPFEVAEAS 62 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~-----------~~g-------------~~~~~~~~~~~~~a 62 (316)
||+|||+|.||..+|..++.+|++|++||++++.++... +.| +..+++.+++. +|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 699999999999999999999999999999988643322 112 45677888877 99
Q ss_pred CEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCC
Q 021213 63 DVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG 141 (316)
Q Consensus 63 divi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~ 141 (316)
|+||.|+|.+.+.-++++..++.+++ ++.++. ++|+.++ ..+++.+.+ +.+..| .||.++|....
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~-----~~~ilasnTSsl~i---~~la~~~~~--p~R~ig----~Hf~~P~~~~~ 145 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICP-----PDTILASNTSSLSI---SELAAALSR--PERFIG----MHFFNPPHLMP 145 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS------TTSEEEE--SSS-H---HHHHTTSST--GGGEEE----EEE-SSTTT--
T ss_pred heehhhccccHHHHHHHHHHHHHHhC-----CCceEEecCCCCCH---HHHHhccCc--CceEEE----EecccccccCc
Confidence 99999999987744567777666653 333443 3333333 345544432 223444 78888776554
Q ss_pred hHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCC
Q 021213 142 VLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGG 180 (316)
Q Consensus 142 ~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~ 180 (316)
..+...+..+ +++..+++..+++.+|+.++.+.+
T Consensus 146 lVEvv~~~~T-----~~~~~~~~~~~~~~~gk~pv~v~D 179 (180)
T PF02737_consen 146 LVEVVPGPKT-----SPETVDRVRALLRSLGKTPVVVKD 179 (180)
T ss_dssp EEEEEE-TTS------HHHHHHHHHHHHHTT-EEEEEES
T ss_pred eEEEeCCCCC-----CHHHHHHHHHHHHHCCCEEEEecC
Confidence 4444334334 899999999999999998887643
No 84
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=99.59 E-value=3.4e-14 Score=125.56 Aligned_cols=249 Identities=13% Similarity=0.153 Sum_probs=157.8
Q ss_pred hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC--------------CcCCHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 15 NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP--------------TKETPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 15 ~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~--------------~~~~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
.||+.+|..|.++||+|++|+|+ ++.+.+++.|+. ..+++++ ...+|+||+|++..+ +++++
T Consensus 1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~--~~~~l 76 (293)
T TIGR00745 1 AVGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQ--TEEAA 76 (293)
T ss_pred CchHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchh--HHHHH
Confidence 47999999999999999999997 677778765521 1223444 568999999999875 78888
Q ss_pred cCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCC--hHhhhcCceEEEecC--
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGG--VLAAEAGTLTFMVGG-- 156 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~--~~~~~~g~~~~~~~~-- 156 (316)
..+.+.+. ++.+|+...++ .+..+.+.+.++...+ .. ++.+..+-..++ ......+. +.+|.
T Consensus 77 ~~l~~~l~-----~~~~iv~~qNG-~g~~~~l~~~~~~~~v--~~----g~~~~~~~~~~pg~v~~~~~~~--~~iG~~~ 142 (293)
T TIGR00745 77 ALLLPLIG-----KNTKVLFLQNG-LGHEERLRELLPARRI--LG----GVVTHGAVREEPGVVHHAGLGA--TKIGDYV 142 (293)
T ss_pred HHhHhhcC-----CCCEEEEccCC-CCCHHHHHHHhCccCE--EE----EEEEEeeEEcCCcEEEEecccc--EEEecCC
Confidence 87776663 33455554443 3334566665543221 01 122222211111 11111222 33332
Q ss_pred -CHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHcCC
Q 021213 157 -SEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMA---------------------VSMLGVSEALTLGQSLGI 214 (316)
Q Consensus 157 -~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~---------------------~~~~~~~Ea~~l~~~~G~ 214 (316)
..+..+.+.++|+..+.++....++-...|.|++.|...+ ....++.|...++++.|+
T Consensus 143 ~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~ 222 (293)
T TIGR00745 143 GENEAVEALAELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGV 222 (293)
T ss_pred CchHHHHHHHHHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCC
Confidence 2245677888888888777777888889999999886433 234578899999999997
Q ss_pred C--HHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 021213 215 S--ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 292 (316)
Q Consensus 215 ~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~ 292 (316)
+ ++.+.+.+....... .....++..++..|++.+-++..| .++++++++|+++|.++.++++++..
T Consensus 223 ~~~~~~~~~~~~~~~~~~-~~~~sSm~~D~~~gr~tEid~i~G-----------~~v~~a~~~gv~~P~~~~l~~~~~~~ 290 (293)
T TIGR00745 223 DLPDDEVEELVRAVIRMT-AENTSSMLQDLLRGRRTEIDAING-----------AVVRLAEKLGIDAPVNRTLYALLKAL 290 (293)
T ss_pred CCCHHHHHHHHHHHHhcC-CCCCChHHHHHHcCCcchHHHhcc-----------HHHHHHHHcCCCCChHHHHHHHHHHh
Confidence 5 333444443321110 001112345555666666666666 79999999999999999999988764
Q ss_pred H
Q 021213 293 C 293 (316)
Q Consensus 293 ~ 293 (316)
.
T Consensus 291 e 291 (293)
T TIGR00745 291 E 291 (293)
T ss_pred h
Confidence 3
No 85
>PLN02712 arogenate dehydrogenase
Probab=99.58 E-value=2e-13 Score=131.94 Aligned_cols=165 Identities=16% Similarity=0.186 Sum_probs=115.7
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhh-cCCEEEEeCCCChhhHHHHhcC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE-ASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~adivi~~vp~~~~~~~~v~~~ 82 (316)
+.|+|||||+|.||..+|..|.+.|++|++|||+... +...+.|+....+.+++++ .+|+||+|+|... +.+++..
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~~~--~~~vi~~ 444 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSILS--TEKVLKS 444 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCChHH--HHHHHHH
Confidence 4589999999999999999999999999999998653 4455677776778888775 5899999999654 6787766
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEE-eccCCCChHhhhcC--ceE-----EEe
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVLAAEAG--TLT-----FMV 154 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~-~~p~~~~~~~~~~g--~~~-----~~~ 154 (316)
+.... ..++.+++|+++++....+.+.+.++. +..|+ .+|++|.... ..| ... .++
T Consensus 445 l~~~~----lk~g~ivvDv~SvK~~~~~~~~~~l~~-----------~~~~v~~HPm~G~e~~-~~G~~~~~~lf~~~~v 508 (667)
T PLN02712 445 LPFQR----LKRSTLFVDVLSVKEFPRNLFLQHLPQ-----------DFDILCTHPMFGPESG-KNGWNNLAFVFDKVRI 508 (667)
T ss_pred HHHhc----CCCCcEEEECCCccHHHHHHHHHhccC-----------CCceEeeCCCCCcccc-ccchhhhhhhccCcEe
Confidence 53211 235679999999986555565555433 14455 7898876543 111 011 223
Q ss_pred cCCHH---HHHHHHHHHHhcCCCeEeeCCcchHHHH
Q 021213 155 GGSED---AYQAAKPLFLSMGKNTIYCGGAGNGAAA 187 (316)
Q Consensus 155 ~~~~~---~~~~v~~ll~~~g~~v~~~g~~g~a~~~ 187 (316)
+++.+ ..+.+.++++.+|.+++.+.....-..+
T Consensus 509 ~~~~~~~~~~~~l~~l~~~lGa~vv~ms~eeHD~~~ 544 (667)
T PLN02712 509 GSDDRRVSRCDSFLDIFAREGCRMVEMSCAEHDWHA 544 (667)
T ss_pred CCCcchHHHHHHHHHHHHHcCCEEEEeCHHHHHHHH
Confidence 44443 4455669999999998888765555443
No 86
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.57 E-value=1.2e-13 Score=136.71 Aligned_cols=184 Identities=16% Similarity=0.203 Sum_probs=131.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHHHHHHhCCCC--CcCCHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDMGVP--TKETPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~~g~~--~~~~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
.+||+|||+|.||.++++.|.+.| ++|++|||++++.+.+.+.|.. ..++..++++++|+||+|+|... +++++
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~~--~~~vl 80 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVLA--MEKVL 80 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHHH--HHHHH
Confidence 368999999999999999999998 5899999999998888887764 45577888899999999999754 78888
Q ss_pred cCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChH--------hhhcCceEE
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVL--------AAEAGTLTF 152 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~--------~~~~g~~~~ 152 (316)
..+.+.++ ++.+++|+++++....+.+.+.+.... ...++++|+.|+.. ....+...+
T Consensus 81 ~~l~~~~~-----~~~ii~d~~svk~~~~~~l~~~~~~~~---------~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~ 146 (735)
T PRK14806 81 ADLKPLLS-----EHAIVTDVGSTKGNVVDAARAVFGELP---------AGFVPGHPIAGSEKSGVHAANADLFRNHKVI 146 (735)
T ss_pred HHHHHhcC-----CCcEEEEcCCCchHHHHHHHHhccccC---------CeEEecCCcCcCCcchhhhhhhHHhCCCeEE
Confidence 77655443 456899999998777777776654311 02467899886542 122333333
Q ss_pred Eec---CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 021213 153 MVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEA 205 (316)
Q Consensus 153 ~~~---~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea 205 (316)
++. .+++..+.++++++.+|.+++++.+......+-++..... .+...+.|+
T Consensus 147 ~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~ph-~~~~~l~~~ 201 (735)
T PRK14806 147 LTPLAETDPAALARVDRLWRAVGADVLHMDVAHHDEVLAATSHLPH-LLAFSLVDQ 201 (735)
T ss_pred EECCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHhHHHHHhcchHH-HHHHHHHHH
Confidence 332 4778899999999999998888876444444433333322 233444455
No 87
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.57 E-value=3.4e-14 Score=138.59 Aligned_cols=190 Identities=19% Similarity=0.130 Sum_probs=133.5
Q ss_pred CeEEEEccchhhHHHHHHHH-hCCCeEEEEeCChhHHHHH-----------HhCC-------------CCCcCCHHHHhh
Q 021213 6 QSVGFIGLGNMGFRMASNLM-KAGYKMAVHDVNCNVMKMF-----------SDMG-------------VPTKETPFEVAE 60 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~-~~g~~V~~~~r~~~~~~~l-----------~~~g-------------~~~~~~~~~~~~ 60 (316)
++|+|||+|.||..||..++ ++|++|++||++++.++.. .+.| ++.+++. +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 58999999999999999998 5899999999998754332 1111 3445565 4578
Q ss_pred cCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCC
Q 021213 61 ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS 139 (316)
Q Consensus 61 ~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~ 139 (316)
+||+||.|+|.+.+--++++.+++.+++ ++.++. |+|+.++. .+++.+.+ +.+..| .||.++|..
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~-----~~~ilasnTS~l~i~---~la~~~~~--p~r~~g----~HffnP~~~ 449 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECA-----AHTIFASNTSSLPIG---QIAAAASR--PENVIG----LHYFSPVEK 449 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCC-----CCcEEEeCCCCCCHH---HHHHhcCC--cccEEE----EecCCcccc
Confidence 9999999999987734467777666653 333333 23333333 44544432 122343 788888877
Q ss_pred CChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 021213 140 GGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTL 219 (316)
Q Consensus 140 ~~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~ 219 (316)
....+...+..+ +++..+.+..+++.+|+.++.+.+ ..|.. .|-+. ...++|++.+.+ .|++++++
T Consensus 450 ~~lVEvv~g~~T-----~~~~~~~~~~~~~~~gk~pv~v~d-~pGfi----~nRl~---~~~~~Ea~~l~~-~G~~~~dI 515 (699)
T TIGR02440 450 MPLVEVIPHAGT-----SEQTIATTVALAKKQGKTPIVVAD-KAGFY----VNRIL---APYMNEAARLLL-EGEPVEHI 515 (699)
T ss_pred CceEEEeCCCCC-----CHHHHHHHHHHHHHcCCeEEEEcc-ccchH----HHHHH---HHHHHHHHHHHH-CCCCHHHH
Confidence 666666566656 999999999999999999998876 24444 45544 345679988877 47899999
Q ss_pred HHHHh
Q 021213 220 TKILN 224 (316)
Q Consensus 220 ~~~~~ 224 (316)
..++.
T Consensus 516 D~a~~ 520 (699)
T TIGR02440 516 DKALV 520 (699)
T ss_pred HHHHH
Confidence 88874
No 88
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.55 E-value=1.7e-13 Score=120.62 Aligned_cols=196 Identities=16% Similarity=0.087 Sum_probs=120.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHH-HHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHh-cC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVM-KMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVY-NG 82 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~-~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~-~~ 82 (316)
.++|+|||+|+||.++|.+|.+.|++|++++++.++. +...+.|+... ++++++++||+|++++|+.. ..+++ .+
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~--~~~V~~~~ 93 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEV--QAEVYEEE 93 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHH--HHHHHHHH
Confidence 4789999999999999999999999999988765543 44445676654 88999999999999999765 47777 44
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCC--CChHhhhcCceEEE-ecCC--
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS--GGVLAAEAGTLTFM-VGGS-- 157 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~--~~~~~~~~g~~~~~-~~~~-- 157 (316)
+.+.+ .++++++.+....... .....+.. ..+ ...+++.|.. .+......|...++ +..|
T Consensus 94 I~~~L-----k~g~iL~~a~G~~i~~---~~~~p~~~-----~~V--i~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t 158 (330)
T PRK05479 94 IEPNL-----KEGAALAFAHGFNIHF---GQIVPPAD-----VDV--IMVAPKGPGHLVRREYEEGGGVPCLIAVHQDAS 158 (330)
T ss_pred HHhcC-----CCCCEEEECCCCChhh---ceeccCCC-----CcE--EEeCCCCCchhhhhhhhcCCCceEEEEecCCCC
Confidence 44333 2455665555443332 22222111 000 0122333322 11222445655555 4554
Q ss_pred HHHHHHHHHHHHhcCCCeE-----eeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 021213 158 EDAYQAAKPLFLSMGKNTI-----YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTL 219 (316)
Q Consensus 158 ~~~~~~v~~ll~~~g~~v~-----~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~ 219 (316)
.++.+.+..+++++|.... .+.+.---..+.- ...+......++..++.+....|.+|+..
T Consensus 159 ~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~ge-q~vl~gg~~~l~~~~~e~l~eaG~~pe~A 224 (330)
T PRK05479 159 GNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGE-QAVLCGGLTELIKAGFETLVEAGYQPEMA 224 (330)
T ss_pred HHHHHHHHHHHHHcCCCccceeeeeecccccccchhh-HHHHhhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 7889999999999997642 1111110111111 22334445566677778888999998864
No 89
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.55 E-value=7.7e-14 Score=136.43 Aligned_cols=190 Identities=18% Similarity=0.136 Sum_probs=133.2
Q ss_pred CeEEEEccchhhHHHHHHHH-hCCCeEEEEeCChhHHHHH-----------HhCC-------------CCCcCCHHHHhh
Q 021213 6 QSVGFIGLGNMGFRMASNLM-KAGYKMAVHDVNCNVMKMF-----------SDMG-------------VPTKETPFEVAE 60 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~-~~g~~V~~~~r~~~~~~~l-----------~~~g-------------~~~~~~~~~~~~ 60 (316)
+||+|||+|.||..||..++ .+|++|++||++++.++.. .+.| ++.+++. +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 58999999999999999999 8899999999998854332 1112 4445555 4678
Q ss_pred cCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCC
Q 021213 61 ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS 139 (316)
Q Consensus 61 ~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~ 139 (316)
+||+||.|+|.+.+-.++++.+++.+++ ++.++. |+|+.++. .+++.+.+ +.+..| .||.++|..
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~-----~~~ilasnTS~l~i~---~la~~~~~--p~r~ig----~Hff~P~~~ 454 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCA-----PHTIFASNTSSLPIG---QIAAAAAR--PEQVIG----LHYFSPVEK 454 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCC-----CCcEEEECCCCCCHH---HHHHhcCc--ccceEE----EecCCcccc
Confidence 9999999999987734567776666653 333443 22333333 44444432 112343 788887776
Q ss_pred CChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 021213 140 GGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTL 219 (316)
Q Consensus 140 ~~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~ 219 (316)
....+...+..+ +++..+.+..+++.+|+.++.+.+ ..+.. .|-+. ...++|++.+.++ |++++++
T Consensus 455 ~~lVEvv~g~~T-----s~~~~~~~~~~~~~~gk~pv~v~d-~pGfi----~nRl~---~~~~~EA~~lv~e-Gv~~~dI 520 (708)
T PRK11154 455 MPLVEVIPHAKT-----SAETIATTVALAKKQGKTPIVVRD-GAGFY----VNRIL---APYINEAARLLLE-GEPIEHI 520 (708)
T ss_pred CceEEEECCCCC-----CHHHHHHHHHHHHHcCCceEEEec-cCcHH----HHHHH---HHHHHHHHHHHHc-CCCHHHH
Confidence 655555555555 999999999999999999888866 34444 45444 3456799988876 8899999
Q ss_pred HHHHh
Q 021213 220 TKILN 224 (316)
Q Consensus 220 ~~~~~ 224 (316)
..++.
T Consensus 521 D~a~~ 525 (708)
T PRK11154 521 DAALV 525 (708)
T ss_pred HHHHH
Confidence 88875
No 90
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.54 E-value=1.4e-13 Score=134.71 Aligned_cols=193 Identities=16% Similarity=0.159 Sum_probs=135.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHH-----------HhCC-------------CCCcCCHHHHhhc
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF-----------SDMG-------------VPTKETPFEVAEA 61 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l-----------~~~g-------------~~~~~~~~~~~~~ 61 (316)
.+|+|||+|.||..||..++.+||+|++||++++.++.. .+.| ++.+++. +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 589999999999999999999999999999998865432 1222 4445565 45689
Q ss_pred CCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCC
Q 021213 62 SDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG 140 (316)
Q Consensus 62 adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~ 140 (316)
||+||.|+|.+.+..++++.+++.+++ ++.++. |+|+.++. .+++.+.+ +.+..| .||.++|..-
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~-----~~~ilasNTSsl~i~---~la~~~~~--p~r~~g----~Hff~P~~~~ 458 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVR-----EDTILASNTSTISIS---LLAKALKR--PENFCG----MHFFNPVHRM 458 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCC-----CCcEEEEcCCCCCHH---HHHhhcCC--CccEEE----EecCCccccc
Confidence 999999999987734567777666653 333333 23333333 45544432 112343 7888887665
Q ss_pred ChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 021213 141 GVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLT 220 (316)
Q Consensus 141 ~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~ 220 (316)
...+...+..+ +++..+.+..+++.+|+.++.+.+ ..+.. .|-+.. ..++|++.+.++ |.+++++.
T Consensus 459 ~lVEvv~g~~T-----~~~~~~~~~~~~~~lgk~pv~v~d-~pGfv----~nRi~~---~~~~ea~~lv~~-Ga~~e~ID 524 (715)
T PRK11730 459 PLVEVIRGEKT-----SDETIATVVAYASKMGKTPIVVND-CPGFF----VNRVLF---PYFAGFSQLLRD-GADFRQID 524 (715)
T ss_pred ceEEeeCCCCC-----CHHHHHHHHHHHHHhCCceEEecC-cCchh----HHHHHH---HHHHHHHHHHHc-CCCHHHHH
Confidence 55555555555 899999999999999999998876 34444 555443 345698888776 59999998
Q ss_pred HHHhhcc
Q 021213 221 KILNSSS 227 (316)
Q Consensus 221 ~~~~~~~ 227 (316)
.++..+.
T Consensus 525 ~a~~~~~ 531 (715)
T PRK11730 525 KVMEKQF 531 (715)
T ss_pred HHHHhhC
Confidence 8876543
No 91
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.53 E-value=1.8e-13 Score=133.62 Aligned_cols=193 Identities=15% Similarity=0.156 Sum_probs=136.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH-----------hCC-------------CCCcCCHHHHhhc
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS-----------DMG-------------VPTKETPFEVAEA 61 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~-----------~~g-------------~~~~~~~~~~~~~ 61 (316)
++|+|||+|.||..||..++.+|++|++||++++.++... +.| ++.+++. +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 5899999999999999999999999999999988654321 122 4445555 44689
Q ss_pred CCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCC
Q 021213 62 SDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG 140 (316)
Q Consensus 62 adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~ 140 (316)
||+||.|+|.+.+-.++++.+++.+++ ++.++. |+|+.++. .+++.+.+ +.+..| .||.++|...
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~-----~~~ilasnTS~l~i~---~ia~~~~~--p~r~ig----~Hff~P~~~~ 458 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVR-----EDAILASNTSTISIS---LLAKALKR--PENFCG----MHFFNPVHRM 458 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCC-----CCcEEEECCCCCCHH---HHHhhcCC--cccEEE----EecCCCcccC
Confidence 999999999987734567777766653 333333 23333333 45554432 222344 7888887766
Q ss_pred ChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 021213 141 GVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLT 220 (316)
Q Consensus 141 ~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~ 220 (316)
...+...+..+ +++..+.+..+++.+|+.++.+.+ ..+.. .|-+.. ..+.|++.+.+. |.+++++.
T Consensus 459 ~lvEvv~g~~T-----s~~~~~~~~~~~~~lgk~pv~v~d-~pGfi----~NRl~~---~~~~ea~~l~~e-G~~~~~ID 524 (714)
T TIGR02437 459 PLVEVIRGEKS-----SDETIATVVAYASKMGKTPIVVND-CPGFF----VNRVLF---PYFGGFSKLLRD-GADFVRID 524 (714)
T ss_pred ceEeecCCCCC-----CHHHHHHHHHHHHHcCCEEEEeCC-cccch----HHHHHH---HHHHHHHHHHHC-CCCHHHHH
Confidence 66666566656 999999999999999999998876 34444 565544 345799888865 69999999
Q ss_pred HHHhhcc
Q 021213 221 KILNSSS 227 (316)
Q Consensus 221 ~~~~~~~ 227 (316)
.++..+.
T Consensus 525 ~a~~~~~ 531 (714)
T TIGR02437 525 KVMEKQF 531 (714)
T ss_pred HHHHhcC
Confidence 8876543
No 92
>PLN02712 arogenate dehydrogenase
Probab=99.53 E-value=5.3e-13 Score=129.02 Aligned_cols=169 Identities=17% Similarity=0.205 Sum_probs=118.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHh-hcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA-EASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
+|+|+|||+|.||..++..|.+.|++|++|+|+... +...+.|+....+..+++ +++|+||+|+|... +.+++.++
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~~~--~~~vl~~l 128 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSIIS--TENVLKSL 128 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCHHH--HHHHHHhh
Confidence 479999999999999999999999999999998544 455667877777888865 56999999999653 78888765
Q ss_pred C-CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHh--hhcCceEEEe----cC
Q 021213 84 N-GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLA--AEAGTLTFMV----GG 156 (316)
Q Consensus 84 ~-~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~--~~~g~~~~~~----~~ 156 (316)
. +.+ .++.+|+|+++++....+.+.+.++... ..+..+|++|.... ...+...++. +.
T Consensus 129 ~~~~l-----~~g~iVvDv~SvK~~~~~~l~~~l~~~~----------~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~ 193 (667)
T PLN02712 129 PLQRL-----KRNTLFVDVLSVKEFAKNLLLDYLPEDF----------DIICSHPMFGPQSAKHGWDGLRFVYEKVRIGN 193 (667)
T ss_pred hhhcC-----CCCeEEEECCCCcHHHHHHHHHhcCCCC----------eEEeeCCcCCCccccchhccCcEEEeeccCCC
Confidence 3 222 3567999999988766666666554310 24456788876521 2233323333 22
Q ss_pred CH---HHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHH
Q 021213 157 SE---DAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICN 191 (316)
Q Consensus 157 ~~---~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~ 191 (316)
+. +..+++.++++.+|.+++.+.....-..+-.+.
T Consensus 194 ~~~~~~~~~~l~~l~~~lGa~v~~ms~eeHD~~~A~vs 231 (667)
T PLN02712 194 EELRVSRCKSFLEVFEREGCKMVEMSCTEHDKYAAESQ 231 (667)
T ss_pred ccccHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHH
Confidence 22 345677799999999988887655555544333
No 93
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.53 E-value=9.3e-14 Score=135.90 Aligned_cols=189 Identities=17% Similarity=0.155 Sum_probs=134.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH-----------hCC-------------CCCcCCHHHHhhc
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS-----------DMG-------------VPTKETPFEVAEA 61 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~-----------~~g-------------~~~~~~~~~~~~~ 61 (316)
.+|+|||+|.||..||..++.+|++|++||++++.++... +.| ++.+++.+ .+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 5799999999999999999999999999999998654421 112 44556664 5689
Q ss_pred CCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEE-EcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCC
Q 021213 62 SDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLI-DSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSG 140 (316)
Q Consensus 62 adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi-~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~ 140 (316)
||+||.|+|.+.+--++++.+++.+++ ++.++. |+|+.++. .+++.+.+ +.+..| .||.++|...
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~-----~~~ilasNTSsl~i~---~la~~~~~--p~r~ig----~Hff~P~~~m 480 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVP-----PHCIIASNTSALPIK---DIAAVSSR--PEKVIG----MHYFSPVDKM 480 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCC-----CCcEEEEcCCCCCHH---HHHhhcCC--ccceEE----EeccCCcccC
Confidence 999999999987734467777666653 333333 34444443 45554433 122343 7888877665
Q ss_pred ChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 021213 141 GVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLT 220 (316)
Q Consensus 141 ~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~ 220 (316)
...+...+..+ +++..+.+..+++.+|+.++.+.+ ..|.. .|-+. ...++|++.+.+. |++++++.
T Consensus 481 ~LvEvv~g~~T-----s~~~~~~~~~~~~~lgk~pv~v~d-~pGFi----~NRi~---~~~~~ea~~lv~e-Gv~~~~ID 546 (737)
T TIGR02441 481 QLLEIITHDGT-----SKDTLASAVAVGLKQGKVVIVVKD-GPGFY----TTRCL---GPMLAEVIRLLQE-GVDPKKLD 546 (737)
T ss_pred ceEEEeCCCCC-----CHHHHHHHHHHHHHCCCeEEEECC-cCCch----HHHHH---HHHHHHHHHHHHc-CCCHHHHH
Confidence 55555555555 999999999999999999998876 34444 45544 3456799888765 78999998
Q ss_pred HHH
Q 021213 221 KIL 223 (316)
Q Consensus 221 ~~~ 223 (316)
.++
T Consensus 547 ~a~ 549 (737)
T TIGR02441 547 KLT 549 (737)
T ss_pred HHH
Confidence 885
No 94
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.52 E-value=3e-14 Score=104.24 Aligned_cols=89 Identities=25% Similarity=0.385 Sum_probs=72.1
Q ss_pred eEEEEccchhhHHHHHHHHhCC---CeEEEE-eCChhHHHHHHh-CCCCCcC-CHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 7 SVGFIGLGNMGFRMASNLMKAG---YKMAVH-DVNCNVMKMFSD-MGVPTKE-TPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g---~~V~~~-~r~~~~~~~l~~-~g~~~~~-~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
||||||+|+||.+|++.|.++| ++|+++ +|++++.+.+.+ .+..... +..++++++|+||+|+|... +.+++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~--~~~v~ 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQ--LPEVL 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGG--HHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHH--HHHHH
Confidence 7999999999999999999999 999955 999999988865 4555555 89999999999999998765 78888
Q ss_pred cCCCCcccCCCCCCCeEEEEcCC
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSST 103 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st 103 (316)
..+ ... .+++++|+.+.
T Consensus 79 ~~i-~~~-----~~~~~vis~~a 95 (96)
T PF03807_consen 79 SEI-PHL-----LKGKLVISIAA 95 (96)
T ss_dssp HHH-HHH-----HTTSEEEEEST
T ss_pred HHH-hhc-----cCCCEEEEeCC
Confidence 766 222 25579988764
No 95
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.49 E-value=2e-12 Score=116.07 Aligned_cols=161 Identities=16% Similarity=0.181 Sum_probs=116.1
Q ss_pred CCCCeEEEEcc-chhhHHHHHHHHhC-CCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 3 FFDQSVGFIGL-GNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 3 ~~~~~IgiiG~-G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
.-+++|+|||+ |.||+.+++.|.+. +++|++||++.+ ...++.+.+++||+||+|+|-.. +.+++
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavPv~~--~~~~l 68 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAPIRH--TAALI 68 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCCHHH--HHHHH
Confidence 34689999999 99999999999964 889999998521 23467788899999999999765 67777
Q ss_pred cCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEE-eccCCCChH-hhhcCceEEEecC-C
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVML-DAPVSGGVL-AAEAGTLTFMVGG-S 157 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~-~~p~~~~~~-~~~~g~~~~~~~~-~ 157 (316)
.++.+..+. ..++.+|+|.++++....+.+.+. . ..|+ .+|++|+.. ....+...+++.. .
T Consensus 69 ~~l~~~~~~--l~~~~iVtDVgSvK~~i~~~~~~~----~----------~~fVG~HPMaG~E~s~lf~g~~~iltp~~~ 132 (370)
T PRK08818 69 EEYVALAGG--RAAGQLWLDVTSIKQAPVAAMLAS----Q----------AEVVGLHPMTAPPKSPTLKGRVMVVCEARL 132 (370)
T ss_pred HHHhhhhcC--CCCCeEEEECCCCcHHHHHHHHhc----C----------CCEEeeCCCCCCCCCcccCCCeEEEeCCCc
Confidence 776554211 236789999999997655554211 1 2344 578888753 3445665555543 4
Q ss_pred HHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHH
Q 021213 158 EDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNN 192 (316)
Q Consensus 158 ~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n 192 (316)
.+..++++++++.+|.+++.+....+-..+..++.
T Consensus 133 ~~~~~~v~~l~~~~Ga~v~~~~aeeHD~~~A~vS~ 167 (370)
T PRK08818 133 QHWSPWVQSLCSALQAECVYATPEHHDRVMALVQA 167 (370)
T ss_pred hhHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHH
Confidence 55578899999999999988887666667665543
No 96
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=99.47 E-value=2.5e-12 Score=110.26 Aligned_cols=229 Identities=14% Similarity=0.171 Sum_probs=149.2
Q ss_pred CCeEEEEeCChhHHHHHHh-CCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCH
Q 021213 28 GYKMAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP 106 (316)
Q Consensus 28 g~~V~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~ 106 (316)
.++|++|+|++++.+.+.+ .|+..+++..++++++|+||+||+ +.+ +++++.++.+.+. ++++||+++.+.+
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVk-P~~-i~~vl~~l~~~~~-----~~~~ivS~~agi~ 81 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVK-PQD-LEEVLSELKSEKG-----KDKLLISIAAGVT 81 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeC-HHH-HHHHHHHHhhhcc-----CCCEEEEecCCCC
Confidence 3789999999999888765 588788899999999999999998 455 8999887765332 3458887776654
Q ss_pred HHHHHHHHHHhhc-hhhhccCCCCCccEEeccCCCChHhhhcCceEEEecC--CHHHHHHHHHHHHhcCCCeEeeCC--c
Q 021213 107 QTSRNISAAVSNC-ILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SEDAYQAAKPLFLSMGKNTIYCGG--A 181 (316)
Q Consensus 107 ~~~~~l~~~~~~~-~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~--~~~~~~~v~~ll~~~g~~v~~~g~--~ 181 (316)
. ..+.+.++.. .+. ..+++.| .....|...+..+. +++..+.++.+|+.+|.. +++.+ .
T Consensus 82 ~--~~l~~~~~~~~~iv--------R~mPn~~-----~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~-~~v~E~~~ 145 (245)
T TIGR00112 82 L--EKLSQLLGGTRRVV--------RVMPNTP-----AKVGAGVTAIAANANVSEEDRALVLALFKAVGEV-VELPEALM 145 (245)
T ss_pred H--HHHHHHcCCCCeEE--------EECCChH-----HHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCE-EEECHHHc
Confidence 3 4566655421 110 1233332 33334543344432 567788999999999975 45554 3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccc-cccCCCCCCcccCCCCCCCCCCCcchhh
Q 021213 182 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWS-SDSYNPVPGVMEGVPASRNYGGGFASKL 260 (316)
Q Consensus 182 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (316)
.....+--+...+.+.++..+.++ +.+.|+++++..+++.++..++.. .......|+.+ .++..+||.+..
T Consensus 146 ~~~talsgsgPA~~~~~~~al~~~---~v~~Gl~~~~A~~lv~~~~~G~a~l~~~~~~~~~~l----~~~v~spgGtT~- 217 (245)
T TIGR00112 146 DAVTALSGSGPAYVFLFIEALADA---GVKQGLPRELALELAAQTVKGAAKLLEESGEHPALL----KDQVTSPGGTTI- 217 (245)
T ss_pred chHHhhccCcHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH----HHcCCCCcHHHH-
Confidence 334444445556666667666666 889999999999998886532211 11111122222 233445655444
Q ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Q 021213 261 MAKDLNLALASAKEVGVDCPLTSQAQDIYAKLC 293 (316)
Q Consensus 261 ~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~ 293 (316)
..++..++.|+.--+.+++.+.++++.
T Consensus 218 ------~gl~~Le~~~~~~~~~~a~~aa~~r~~ 244 (245)
T TIGR00112 218 ------AGLAVLEEKGVRGAVIEAVEAAVRRSR 244 (245)
T ss_pred ------HHHHHHHHCChHHHHHHHHHHHHHHhc
Confidence 567777888998888888888887764
No 97
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.44 E-value=5.2e-12 Score=111.52 Aligned_cols=199 Identities=17% Similarity=0.089 Sum_probs=119.0
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCC-hhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVN-CNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~-~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~ 82 (316)
..++|+|||+|+||.+++.+|.++|++|+++++. +++.+.+.+.|+.. .+..+++++||+|++++|+... ...++.+
T Consensus 2 ~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~-~s~~ea~~~ADiVvLaVpp~~~-~~~v~~e 79 (314)
T TIGR00465 2 KGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKV-GTVEEAIPQADLIMNLLPDEVQ-HEVYEAE 79 (314)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEE-CCHHHHHhcCCEEEEeCCcHhH-HHHHHHH
Confidence 3579999999999999999999999998876544 45566666778765 4688889999999999997633 5555544
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCC--CChHhhhcCceEEE-ecC--C
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS--GGVLAAEAGTLTFM-VGG--S 157 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~--~~~~~~~~g~~~~~-~~~--~ 157 (316)
+.+.++ ++. +|..+.+.. ...+...++... .. ...+++.|.. +.......|...++ +.. +
T Consensus 80 i~~~l~-----~g~-iVs~aaG~~--i~~~~~~~~~~~---~V----vrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~ 144 (314)
T TIGR00465 80 IQPLLK-----EGK-TLGFSHGFN--IHFVQIVPPKDV---DV----VMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPT 144 (314)
T ss_pred HHhhCC-----CCc-EEEEeCCcc--HhhccccCCCCC---cE----EEECCCCCcHHHHHHhhcCCCeeEEEEecCCCC
Confidence 444332 333 555554442 233444443211 00 0234455532 11111244554443 332 6
Q ss_pred HHHHHHHHHHHHhcCCC-------eE--eeCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 021213 158 EDAYQAAKPLFLSMGKN-------TI--YCGG--AGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 226 (316)
Q Consensus 158 ~~~~~~v~~ll~~~g~~-------v~--~~g~--~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~ 226 (316)
.+..+.+..+++++|.. .+ .+.+ .+...++-=+... .+..+.|++ .+.|++++..+.+..+.
T Consensus 145 ~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa----~v~~~~eal---v~~G~~~e~A~~~~~~~ 217 (314)
T TIGR00465 145 GEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTA----LIKAGFDTL---VEAGYQPELAYFETVHE 217 (314)
T ss_pred HHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHH----HHHHHHHHH---HHcCCCHHHHHHHHHHH
Confidence 67888999999999986 21 1211 1222221111111 123334664 68899999988776654
No 98
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.40 E-value=3.1e-12 Score=103.76 Aligned_cols=251 Identities=14% Similarity=0.164 Sum_probs=160.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----------CC------------------CCCcCCHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG------------------VPTKETPF 56 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~g------------------~~~~~~~~ 56 (316)
+.|+|||+|.||+.||+.-+.+|++|+++|++.+.+.+..+ .+ +..+++..
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv~ 91 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNVS 91 (298)
T ss_pred cceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCHH
Confidence 57999999999999999999999999999999886544322 11 45667888
Q ss_pred HHhhcCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEec
Q 021213 57 EVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDA 136 (316)
Q Consensus 57 ~~~~~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~ 136 (316)
++++++|+||.++-.+.+--+.++..++...+ +. .++.+.|.+. ...+++..+.+.. +.. |.||.++
T Consensus 92 ~~v~dadliiEAivEn~diK~~lF~~l~~~ak-----~~-~il~tNTSSl-~lt~ia~~~~~~s--rf~----GlHFfNP 158 (298)
T KOG2304|consen 92 DAVSDADLIIEAIVENLDIKRKLFKDLDKIAK-----SS-TILATNTSSL-SLTDIASATQRPS--RFA----GLHFFNP 158 (298)
T ss_pred HhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcc-----cc-eEEeecccce-eHHHHHhhccChh--hhc----eeeccCC
Confidence 88899999999876665523345555554443 22 3333333222 2234554444321 123 4888886
Q ss_pred cCCCChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 021213 137 PVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 216 (316)
Q Consensus 137 p~~~~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~ 216 (316)
+-.-...+......+ +++.+..+..+-+.+|+..+.+-+. .|.. .|-++ +-.+.|++++.++...+.
T Consensus 159 vPvMKLvEVir~~~T-----S~eTf~~l~~f~k~~gKttVackDt-pGFI----VNRlL---iPyl~ea~r~yerGdAsk 225 (298)
T KOG2304|consen 159 VPVMKLVEVIRTDDT-----SDETFNALVDFGKAVGKTTVACKDT-PGFI----VNRLL---IPYLMEAIRMYERGDASK 225 (298)
T ss_pred chhHHHhhhhcCCCC-----CHHHHHHHHHHHHHhCCCceeecCC-Cchh----hhHHH---HHHHHHHHHHHHhcCCcH
Confidence 533334455555556 8999999999999999988877762 3433 45433 445679999999999999
Q ss_pred HHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHH------cCCCCcHHHHHHHHHH
Q 021213 217 STLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKE------VGVDCPLTSQAQDIYA 290 (316)
Q Consensus 217 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~------~g~~~p~~~~~~~~~~ 290 (316)
+++...+..|.+. -+.|--+ .||.+ +.....+++..++ .=.|.|++..+.+--+
T Consensus 226 eDIDtaMklGagy-------PMGPfEL------~DyvG-------LDt~kfvmdgwhe~~pe~~~f~psPll~klVaegk 285 (298)
T KOG2304|consen 226 EDIDTAMKLGAGY-------PMGPFEL------ADYVG-------LDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGK 285 (298)
T ss_pred hhHHHHHhccCCC-------CCChHHH------HHHhh-------HHHHHHHHHHHHhcCCcccccCCChHHHHHHhccc
Confidence 9998888776531 0111111 12321 1122233333322 2356888888887777
Q ss_pred HHHHcCCCCCcH
Q 021213 291 KLCENGHDSKDF 302 (316)
Q Consensus 291 ~~~~~g~g~~d~ 302 (316)
.+++.|.|.-+|
T Consensus 286 lGrKtg~GfY~Y 297 (298)
T KOG2304|consen 286 LGRKTGEGFYKY 297 (298)
T ss_pred cccccCccceec
Confidence 777777776553
No 99
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.39 E-value=5.5e-13 Score=101.44 Aligned_cols=98 Identities=17% Similarity=0.201 Sum_probs=66.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEE-EeCChhHHHHHHhC-CCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAV-HDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~-~~r~~~~~~~l~~~-g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~ 82 (316)
.+||+|||+|++|..|+..|.++||+|.. |+|+++..+.+.+. +.....++.++++++|++|++||++. +.++..+
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDda--I~~va~~ 87 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDA--IAEVAEQ 87 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCH--HHHHHHH
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHH--HHHHHHH
Confidence 37999999999999999999999999875 58888777776653 44455677888999999999999986 7888877
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCHH
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDPQ 107 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~~ 107 (316)
+...-. ..++++|+.+|...+.
T Consensus 88 La~~~~---~~~g~iVvHtSGa~~~ 109 (127)
T PF10727_consen 88 LAQYGA---WRPGQIVVHTSGALGS 109 (127)
T ss_dssp HHCC-----S-TT-EEEES-SS--G
T ss_pred HHHhcc---CCCCcEEEECCCCChH
Confidence 654311 2367899999887654
No 100
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.37 E-value=6e-11 Score=98.51 Aligned_cols=249 Identities=18% Similarity=0.268 Sum_probs=165.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCC----CeEEEEeCChhHHHH-HHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG----YKMAVHDVNCNVMKM-FSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g----~~V~~~~r~~~~~~~-l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
|+||+||.|+|..++++.+.+.| ++++.+-.+...... ++..|...+.+..+.++.+|+++++++... +..++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svKp~~--i~~vl 78 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVKPQV--IESVL 78 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEeecchh--HHHHh
Confidence 68999999999999999999998 467777764444433 777888887777999999999999986554 78888
Q ss_pred cCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCceEEEecC--CH
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTLTFMVGG--SE 158 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~~~~~~--~~ 158 (316)
.+++..+. ++++++....+.. ...+.+.+.... +.. ..+++.|.. ...+...+..+. ..
T Consensus 79 s~~~~~~~-----~~~iivS~aaG~t--l~~l~~~l~~~~--rvi-----RvmpNtp~~-----v~eg~sv~~~g~~~~~ 139 (267)
T KOG3124|consen 79 SEIKPKVS-----KGKIIVSVAAGKT--LSSLESKLSPPT--RVI-----RVMPNTPSV-----VGEGASVYAIGCHATN 139 (267)
T ss_pred hcCccccc-----cceEEEEEeeccc--HHHHHHhcCCCC--ceE-----EecCCChhh-----hhcCcEEEeeCCCcch
Confidence 87765432 5568887665542 244555544110 000 245566654 223332222222 45
Q ss_pred HHHHHHHHHHHhcCCCeE--------eeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCc
Q 021213 159 DAYQAAKPLFLSMGKNTI--------YCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARC 230 (316)
Q Consensus 159 ~~~~~v~~ll~~~g~~v~--------~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s 230 (316)
+..+.++++++..|.... +++-.|++.++ .+.++.++++. +.++|++++..+++..++..+.
T Consensus 140 ~D~~l~~~ll~~vG~~~evpE~~iDavTgLsGSgPAy-------~f~~ieaLadG---gVkmGlPr~lA~~laaqtllGA 209 (267)
T KOG3124|consen 140 EDLELVEELLSAVGLCEEVPEKCIDAVTGLSGSGPAY-------VFVAIEALADG---GVKMGLPRQLAYRLAAQTLLGA 209 (267)
T ss_pred hhHHHHHHHHHhcCcceeCcHHhhhHHhhccCCcHHH-------HHHHHHHHhcc---ccccCCCHHHHHHHHHHHHHhH
Confidence 667899999999997432 33445666663 44555555555 7799999999988887765322
Q ss_pred -cccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcC
Q 021213 231 -WSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENG 296 (316)
Q Consensus 231 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g 296 (316)
-........|..++ ....+|+.+.. +.+...++-|++.-++.++.+.-.++.+.+
T Consensus 210 akMVl~s~qHP~~Lk----d~V~SPgG~TI-------~glh~LE~ggfRs~linaVeaa~~r~~el~ 265 (267)
T KOG3124|consen 210 AKMVLASGQHPAQLK----DDVCSPGGTTI-------YGLHALEKGGFRSGLINAVEAATKRARELG 265 (267)
T ss_pred HHHHHhccCCcHHHh----CCCCCCCcchH-------HHHHHHHhCCchhHHHHHHHHHHHHHHHhc
Confidence 11112234566654 33446665444 567777889999999999999988888765
No 101
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=99.32 E-value=1.1e-11 Score=106.61 Aligned_cols=286 Identities=14% Similarity=0.063 Sum_probs=166.0
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCC-------CeEEEEeCChh------HHHH-HHhC--------------CCCCcCCH
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAG-------YKMAVHDVNCN------VMKM-FSDM--------------GVPTKETP 55 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g-------~~V~~~~r~~~------~~~~-l~~~--------------g~~~~~~~ 55 (316)
+..||+|||.|+||+++|+.+.++= .+|..|-+... ++.. ++.. .+.+.+|+
T Consensus 20 ~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl 99 (372)
T KOG2711|consen 20 DPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDL 99 (372)
T ss_pred CceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchH
Confidence 3468999999999999999887541 25777754322 2222 2221 15667899
Q ss_pred HHHhhcCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCH----H-HHHHHHHHHhhchhhhccCCCCC
Q 021213 56 FEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDP----Q-TSRNISAAVSNCILKEKKDSWEN 130 (316)
Q Consensus 56 ~~~~~~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~----~-~~~~l~~~~~~~~~~~~~g~~~~ 130 (316)
.++++++|++|..+|.+. +..++.++.+.++ ++...|.++.+.. + ..+.+.+.+.+. .|. .
T Consensus 100 ~ea~~dADilvf~vPhQf--~~~ic~~l~g~vk-----~~~~aISL~KG~e~~~~g~~i~liS~iI~~~-----lgI--~ 165 (372)
T KOG2711|consen 100 VEAAKDADILVFVVPHQF--IPRICEQLKGYVK-----PGATAISLIKGVEVGEEGPGIRLISQIIHRA-----LGI--P 165 (372)
T ss_pred HHHhccCCEEEEeCChhh--HHHHHHHHhcccC-----CCCeEEEeecceeccCCCCceeehHHHHHHH-----hCC--C
Confidence 999999999999999877 7889999888775 3345565554321 1 245556665543 110 1
Q ss_pred ccEEeccCCCChHhhhcCceEEEecCC-HHHHHHHHHHHHhcCCCeEeeCCc-----------------chHHHHHHHHH
Q 021213 131 PVMLDAPVSGGVLAAEAGTLTFMVGGS-EDAYQAAKPLFLSMGKNTIYCGGA-----------------GNGAAAKICNN 192 (316)
Q Consensus 131 ~~~~~~p~~~~~~~~~~g~~~~~~~~~-~~~~~~v~~ll~~~g~~v~~~g~~-----------------g~a~~~k~~~n 192 (316)
..++..|-.........-.-+.+.+.+ .+.-..+..+|+.-...+..+.+. |-...+.+.+|
T Consensus 166 ~~vL~GaNiA~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~N 245 (372)
T KOG2711|consen 166 CSVLMGANIASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNN 245 (372)
T ss_pred ceeecCCchHHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcc
Confidence 345666655544444444444444443 333335888888766544433331 45555566677
Q ss_pred HHHHHHHHHHHHHHHHHHHc-CC-CHHHHHHHHhhccCCccccccCCCC--CCcccC-C---CCCCCCCCCcchhhHHHH
Q 021213 193 LTMAVSMLGVSEALTLGQSL-GI-SASTLTKILNSSSARCWSSDSYNPV--PGVMEG-V---PASRNYGGGFASKLMAKD 264 (316)
Q Consensus 193 ~~~~~~~~~~~Ea~~l~~~~-G~-~~~~~~~~~~~~~~~s~~~~~~~~~--~~~~~~-~---~~~~~~~~~~~~~~~~kd 264 (316)
+-.+.+..++.|+..+++.. .- .++++++.-+..+.-...+..+++. ..+.++ . ..+.....| ........
T Consensus 246 TkaAi~r~Gl~Em~~F~~~f~p~~~~~t~~escGvaDlitTC~gGRNr~~aeafaktgk~~~~~E~ell~G-q~~QG~~T 324 (372)
T KOG2711|consen 246 TKAAIIRLGLLEMIKFATHFYPGSKPTTFFESCGVADLITTCYGGRNRKVAEAFAKTGKSLEELEKELLNG-QKLQGPAT 324 (372)
T ss_pred hHHHHHHhhHHHHHHHHHHhCCCCCcceeeccccHHHHHHHHhcCccHHHHHHHHHcCCCHHHHHHHhhCC-CcccCcHH
Confidence 77777888888998888742 22 4444443322211100001111110 011111 0 000001111 12234456
Q ss_pred HHHHHHHHHHcCC--CCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhc
Q 021213 265 LNLALASAKEVGV--DCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYG 311 (316)
Q Consensus 265 ~~~~~~~a~~~g~--~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~ 311 (316)
.+.+.+++++.|+ ..|++.++|++.. ++....++++.+..
T Consensus 325 a~~Vy~~L~~~~l~~kfPlftaVykI~~-------~~~~~~~lle~l~~ 366 (372)
T KOG2711|consen 325 AKEVYELLQKKGLVEKFPLFTAVYKICY-------ERLPPQALLECLRN 366 (372)
T ss_pred HHHHHHHHHHcChhhhCcHHHHHHHHHh-------cCCCHHHHHHHHhc
Confidence 6788999999999 8999999999874 45566777775544
No 102
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.28 E-value=2.8e-11 Score=98.33 Aligned_cols=201 Identities=14% Similarity=0.161 Sum_probs=138.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHH-----------HHhCC--------------CCCcCCHHHHh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKM-----------FSDMG--------------VPTKETPFEVA 59 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~-----------l~~~g--------------~~~~~~~~~~~ 59 (316)
..||+|+|.|.+|+.+|..|+..||+|.+||+.++.+.. +.+.| +..++++.|+.
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~v 82 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELV 82 (313)
T ss_pred ccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHH
Confidence 469999999999999999999999999999998775322 22222 56778999999
Q ss_pred hcCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCC
Q 021213 60 EASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVS 139 (316)
Q Consensus 60 ~~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~ 139 (316)
+++=.|-.|+|.+.+.-+.++.+++.++. +++|+..||..--..+..+......+ .. ..|-++.|.+
T Consensus 83 k~Ai~iQEcvpE~L~lkk~ly~qlD~i~d------~~tIlaSSTSt~mpS~~s~gL~~k~q---~l----vaHPvNPPyf 149 (313)
T KOG2305|consen 83 KGAIHIQECVPEDLNLKKQLYKQLDEIAD------PTTILASSTSTFMPSKFSAGLINKEQ---CL----VAHPVNPPYF 149 (313)
T ss_pred hhhhhHHhhchHhhHHHHHHHHHHHHhcC------CceEEeccccccChHHHhhhhhhhhh---ee----EecCCCCCcc
Confidence 99888888999987734456666666653 34666655544222233333332221 11 1456677777
Q ss_pred CChHhhhcCceEEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 021213 140 GGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTL 219 (316)
Q Consensus 140 ~~~~~~~~g~~~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~ 219 (316)
-+.......+.+ +++..++.+.+++.+|..++.....-.|.. .|.. ..+.++|..++....+++..++
T Consensus 150 iPLvElVPaPwT-----sp~tVdrt~~lM~sigq~pV~l~rei~Gf~----lnri---q~Ailne~wrLvasGil~v~dv 217 (313)
T KOG2305|consen 150 IPLVELVPAPWT-----SPDTVDRTRALMRSIGQEPVTLKREILGFA----LNRI---QYAILNETWRLVASGILNVNDV 217 (313)
T ss_pred cchheeccCCCC-----ChhHHHHHHHHHHHhCCCCcccccccccce----eccc---cHHHHHHHHHHHHccCcchhhH
Confidence 665555555555 889999999999999976655544223333 2332 3456789999999988999998
Q ss_pred HHHHhhccCCc
Q 021213 220 TKILNSSSARC 230 (316)
Q Consensus 220 ~~~~~~~~~~s 230 (316)
..+++.|.+..
T Consensus 218 D~VmS~GLG~R 228 (313)
T KOG2305|consen 218 DAVMSAGLGPR 228 (313)
T ss_pred HHHHhcCCCcc
Confidence 88888876543
No 103
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.25 E-value=2.2e-10 Score=99.11 Aligned_cols=158 Identities=16% Similarity=0.222 Sum_probs=108.2
Q ss_pred HHHHHHhCC--CeEEEEeCChhHHHHHHhCCCCCc-CCHHHHhhcCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCe
Q 021213 20 MASNLMKAG--YKMAVHDVNCNVMKMFSDMGVPTK-ETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQ 96 (316)
Q Consensus 20 la~~l~~~g--~~V~~~~r~~~~~~~l~~~g~~~~-~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~ 96 (316)
||+.|.++| ++|++||++++..+...+.|+.-. .+..+.++++|+||+|+|-.. +.+++.++.+.++ ++.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~~--~~~~l~~~~~~~~-----~~~ 73 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVSA--IEDVLEEIAPYLK-----PGA 73 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HHH--HHHHHHHHHCGS------TTS
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHHH--HHHHHHHhhhhcC-----CCc
Confidence 578899999 789999999999888888886543 232678899999999999665 6788877766553 567
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccE-EeccCCCC--------hHhhhcCceEEEec---CCHHHHHHH
Q 021213 97 LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVM-LDAPVSGG--------VLAAEAGTLTFMVG---GSEDAYQAA 164 (316)
Q Consensus 97 ~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~-~~~p~~~~--------~~~~~~g~~~~~~~---~~~~~~~~v 164 (316)
+|+|.++++....+.+.+.++.. ..| ..+|++|+ ......|...+++. .+.+.++.+
T Consensus 74 iv~Dv~SvK~~~~~~~~~~~~~~-----------~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~ 142 (258)
T PF02153_consen 74 IVTDVGSVKAPIVEAMERLLPEG-----------VRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELV 142 (258)
T ss_dssp EEEE--S-CHHHHHHHHHHHTSS-----------GEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHhcCcc-----------cceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHH
Confidence 99999999988888887776621 333 45688876 23344566666663 256789999
Q ss_pred HHHHHhcCCCeEeeCCcchHHHHHHHHHHHH
Q 021213 165 KPLFLSMGKNTIYCGGAGNGAAAKICNNLTM 195 (316)
Q Consensus 165 ~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~ 195 (316)
+++++.+|.+++.+.....-..+..+..+..
T Consensus 143 ~~l~~~~Ga~~~~~~~eeHD~~~A~vshlpH 173 (258)
T PF02153_consen 143 EELWEALGARVVEMDAEEHDRIMAYVSHLPH 173 (258)
T ss_dssp HHHHHHCT-EEEE--HHHHHHHHHHHTHHHH
T ss_pred HHHHHHCCCEEEEcCHHHHHHHHHHHHHHHH
Confidence 9999999999888876566666665555433
No 104
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=99.22 E-value=4e-10 Score=96.88 Aligned_cols=157 Identities=15% Similarity=0.117 Sum_probs=115.1
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHh-hcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA-EASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.+|||||.|+||..+|..|.++||.|.+.+|+. --+..+..|....+.+.+++ +.+|+|++|+..-. ++.++....
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsd-yssaa~~yg~~~ft~lhdlcerhpDvvLlctsils--iekilatyp 129 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD-YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSILS--IEKILATYP 129 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcch-hHHHHHHhcccccccHHHHHhcCCCEEEEEehhhh--HHHHHHhcC
Confidence 589999999999999999999999999999975 44444556777777777766 57999999996544 788876553
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccE-EeccCCCChHhhhcCc--eEEEe---cCC-
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVM-LDAPVSGGVLAAEAGT--LTFMV---GGS- 157 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~-~~~p~~~~~~~~~~g~--~~~~~---~~~- 157 (316)
.- + ...++++++..+........+.+++++. +.. ..+|++|+......++ ..++. .++
T Consensus 130 fq-r---lrrgtlfvdvlSvKefek~lfekYLPkd-----------fDIlctHpmfGPksvnh~wqglpfVydkvRig~~ 194 (480)
T KOG2380|consen 130 FQ-R---LRRGTLFVDVLSVKEFEKELFEKYLPKD-----------FDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYA 194 (480)
T ss_pred ch-h---hccceeEeeeeecchhHHHHHHHhCccc-----------cceEeecCCcCCCcCCCccccCceEEEEeecccc
Confidence 22 0 2357799999998877778888998874 333 4567777653333333 22222 233
Q ss_pred ---HHHHHHHHHHHHhcCCCeEeeCC
Q 021213 158 ---EDAYQAAKPLFLSMGKNTIYCGG 180 (316)
Q Consensus 158 ---~~~~~~v~~ll~~~g~~v~~~g~ 180 (316)
+|.++.+-++|...|.+.+++.-
T Consensus 195 ~~r~ercE~fleIf~cegckmVemS~ 220 (480)
T KOG2380|consen 195 ASRPERCEFFLEIFACEGCKMVEMSY 220 (480)
T ss_pred ccchHHHHHHHHHHHhcCCeEEEEEe
Confidence 78999999999999988877653
No 105
>PRK07574 formate dehydrogenase; Provisional
Probab=99.20 E-value=1.3e-10 Score=105.15 Aligned_cols=110 Identities=15% Similarity=0.226 Sum_probs=90.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|+||..+|+.|...|.+|.+|||+....+...+.|+....+++++++.||+|++++|...+ ++.++. +
T Consensus 192 gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~-T~~li~--~ 268 (385)
T PRK07574 192 GMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPE-TEHLFD--A 268 (385)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHH-HHHHhC--H
Confidence 4789999999999999999999999999999986444434455666667899999999999999998877 788774 2
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
+.++. +.++.++||++.+..-..+.+.+.+...
T Consensus 269 ~~l~~--mk~ga~lIN~aRG~iVDe~AL~~AL~sG 301 (385)
T PRK07574 269 DVLSR--MKRGSYLVNTARGKIVDRDAVVRALESG 301 (385)
T ss_pred HHHhc--CCCCcEEEECCCCchhhHHHHHHHHHhC
Confidence 34443 4578899999999987778888888764
No 106
>PLN03139 formate dehydrogenase; Provisional
Probab=99.19 E-value=1.9e-10 Score=104.06 Aligned_cols=110 Identities=16% Similarity=0.215 Sum_probs=90.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|+||..+|+.|...|.+|.+|||+....+...+.|+....++++++++||+|++++|...+ .+.++. +
T Consensus 199 gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~-T~~li~--~ 275 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEK-TRGMFN--K 275 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHH-HHHHhC--H
Confidence 4799999999999999999999999999999986544444556777677999999999999999998877 788774 2
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
+.++. ++++.++||++.+..-..+.+.+.+...
T Consensus 276 ~~l~~--mk~ga~lIN~aRG~iVDe~AL~~AL~sG 308 (386)
T PLN03139 276 ERIAK--MKKGVLIVNNARGAIMDTQAVADACSSG 308 (386)
T ss_pred HHHhh--CCCCeEEEECCCCchhhHHHHHHHHHcC
Confidence 34543 5578899999999987778888888764
No 107
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.16 E-value=2.5e-10 Score=101.85 Aligned_cols=105 Identities=17% Similarity=0.290 Sum_probs=82.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.|+|||||+|.||.++|+.|...|++|++|||+++..... .....++++++++||+|++|+|...+ .+.++. +
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~-t~~li~--~ 218 (330)
T PRK12480 146 NMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKE-SYHLFD--K 218 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHH-HHHHHh--H
Confidence 4789999999999999999999999999999987654322 23456899999999999999998765 566553 2
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
..++. +.++.++||++.+..-....+.+.+..
T Consensus 219 ~~l~~--mk~gavlIN~aRG~~vd~~aL~~aL~~ 250 (330)
T PRK12480 219 AMFDH--VKKGAILVNAARGAVINTPDLIAAVND 250 (330)
T ss_pred HHHhc--CCCCcEEEEcCCccccCHHHHHHHHHc
Confidence 34432 446789999999886666777777765
No 108
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.12 E-value=3.8e-10 Score=101.02 Aligned_cols=108 Identities=16% Similarity=0.223 Sum_probs=85.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||..+|+.|...|++|.+|||++.... ..+.+.. ..++++++++||+|++|+|...+ .+.++..
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~~~-~~~l~ell~~aDiV~l~lP~t~~-T~~~i~~-- 224 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKELGAE-YRPLEELLRESDFVSLHVPLTKE-TYHMINE-- 224 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHcCCE-ecCHHHHHhhCCEEEEeCCCChH-HhhccCH--
Confidence 47999999999999999999999999999999865432 2334443 35899999999999999998766 6776632
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
+.++. +.++.++||++.+..-..+.+.+.+...
T Consensus 225 ~~~~~--mk~ga~lIN~aRg~~vd~~aL~~aL~~g 257 (333)
T PRK13243 225 ERLKL--MKPTAILVNTARGKVVDTKALVKALKEG 257 (333)
T ss_pred HHHhc--CCCCeEEEECcCchhcCHHHHHHHHHcC
Confidence 34433 4578899999999987778888888763
No 109
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=99.12 E-value=2.2e-10 Score=91.32 Aligned_cols=106 Identities=16% Similarity=0.140 Sum_probs=75.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHhC-CC----CCcCCHHHHhhcCCEEEEeCCCChhhHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM-GV----PTKETPFEVAEASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~-g~----~~~~~~~~~~~~adivi~~vp~~~~~~~~ 78 (316)
.++|+|+|+|.||..++..|.+.| ++|++|+|++++.+.+.+. +. ....+..++++++|+||+|+|.+....+.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~~~ 98 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPGDE 98 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCCCC
Confidence 478999999999999999999996 8999999999888776543 32 23456777788999999999976410112
Q ss_pred HhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 79 VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
+.... .. ..++++++|+++.++.+ .+.+.+.+
T Consensus 99 ~~~~~-~~-----~~~~~~v~D~~~~~~~~--~l~~~~~~ 130 (155)
T cd01065 99 LPLPP-SL-----LKPGGVVYDVVYNPLET--PLLKEARA 130 (155)
T ss_pred CCCCH-HH-----cCCCCEEEEcCcCCCCC--HHHHHHHH
Confidence 11110 11 23567999999986554 55555554
No 110
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=99.10 E-value=4.1e-10 Score=91.90 Aligned_cols=109 Identities=19% Similarity=0.236 Sum_probs=82.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.+|..+|+.+..-|.+|++|||+........+.+. ...+.+++++.||+|++++|...+ .+.++. +
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~-~~~~l~ell~~aDiv~~~~plt~~-T~~li~--~ 111 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV-EYVSLDELLAQADIVSLHLPLTPE-TRGLIN--A 111 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE-EESSHHHHHHH-SEEEE-SSSSTT-TTTSBS--H
T ss_pred CCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc-eeeehhhhcchhhhhhhhhccccc-cceeee--e
Confidence 479999999999999999999999999999999887664555565 456999999999999999996544 444442 1
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. ++++.++||++-+..-..+.+.+.+...
T Consensus 112 ~~l~~--mk~ga~lvN~aRG~~vde~aL~~aL~~g 144 (178)
T PF02826_consen 112 EFLAK--MKPGAVLVNVARGELVDEDALLDALESG 144 (178)
T ss_dssp HHHHT--STTTEEEEESSSGGGB-HHHHHHHHHTT
T ss_pred eeeec--cccceEEEeccchhhhhhhHHHHHHhhc
Confidence 23332 4578899999998866667787777663
No 111
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=99.10 E-value=1.1e-08 Score=84.84 Aligned_cols=199 Identities=20% Similarity=0.230 Sum_probs=128.3
Q ss_pred CCeEEEEccchh--------------------hHHHHHHHHhCCCeEEEEeCChh-----HHHHHHhCCCCCcCCHHHHh
Q 021213 5 DQSVGFIGLGNM--------------------GFRMASNLMKAGYKMAVHDVNCN-----VMKMFSDMGVPTKETPFEVA 59 (316)
Q Consensus 5 ~~~IgiiG~G~m--------------------G~~la~~l~~~g~~V~~~~r~~~-----~~~~l~~~g~~~~~~~~~~~ 59 (316)
+|||+|.|+|+- |..||-.++++||+|.+.++|.+ ..++..+.|++.+++..+++
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa 80 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAA 80 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhh
Confidence 379999999974 67789999999999999988654 46777788999999999999
Q ss_pred hcCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHH-HHHHHHHhhchhhhccCCCCCccEEeccC
Q 021213 60 EASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTS-RNISAAVSNCILKEKKDSWENPVMLDAPV 138 (316)
Q Consensus 60 ~~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~-~~l~~~~~~~~~~~~~g~~~~~~~~~~p~ 138 (316)
+.+++.++.+|-... .-.+.+.+.+++ +.+.++.++.|.+|-.. ..++..++..+ +..|. ..+..+.+
T Consensus 81 ~~~Ei~VLFTPFGk~-T~~Iarei~~hv-----pEgAVicnTCT~sp~vLy~~LE~~Lr~kR--~dVGv---ssmHPAgv 149 (340)
T COG4007 81 EHGEIHVLFTPFGKA-TFGIAREILEHV-----PEGAVICNTCTVSPVVLYYSLEGELRTKR--EDVGV---SSMHPAGV 149 (340)
T ss_pred hcceEEEEecccchh-hHHHHHHHHhhC-----cCCcEecccccCchhHHHHHhhhhhcCch--hhcCc---cccCCCCC
Confidence 999999999998855 556665543343 46778888888887533 33444443321 22220 12222222
Q ss_pred CCChHhhhcCceEEEec--------CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021213 139 SGGVLAAEAGTLTFMVG--------GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQ 210 (316)
Q Consensus 139 ~~~~~~~~~g~~~~~~~--------~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~ 210 (316)
-|.+.+ ...++.| ..++..+++.++.++.|+.++.+.. .--+.+.-......+..+.++.+=+.++.
T Consensus 150 PGtp~h----~~yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~pa-dv~s~VaDmg~lvtav~l~gvldyy~Vg~ 224 (340)
T COG4007 150 PGTPQH----GHYVIAGRSTEGKELATEEQIERCVELAESTGKEVYVLPA-DVVSAVADMGVLVTAVALSGVLDYYYVGT 224 (340)
T ss_pred CCCCCC----ceEEEeccCCCceeeccHHHHHHHHHHHHhcCCceEecCH-HHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 232211 1122222 2567889999999999998876653 23333322233344455666666666665
Q ss_pred -HcCCCHHHH
Q 021213 211 -SLGISASTL 219 (316)
Q Consensus 211 -~~G~~~~~~ 219 (316)
-.|.+.+.+
T Consensus 225 qIi~AP~eMI 234 (340)
T COG4007 225 QIIGAPKEMI 234 (340)
T ss_pred HHhCCcHHHH
Confidence 456654443
No 112
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.09 E-value=4.9e-10 Score=97.59 Aligned_cols=74 Identities=24% Similarity=0.352 Sum_probs=61.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhc
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~ 81 (316)
.++|||||+|+||.++|++|.+.|++|++|+|.....+...+.|... .+++++++.||+|++++|++. .+.++.
T Consensus 16 gKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v-~sl~Eaak~ADVV~llLPd~~--t~~V~~ 89 (335)
T PRK13403 16 GKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEV-MSVSEAVRTAQVVQMLLPDEQ--QAHVYK 89 (335)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEE-CCHHHHHhcCCEEEEeCCChH--HHHHHH
Confidence 47899999999999999999999999999988655555555567754 489999999999999999854 467764
No 113
>PRK06436 glycerate dehydrogenase; Provisional
Probab=99.08 E-value=6.2e-10 Score=97.99 Aligned_cols=104 Identities=19% Similarity=0.267 Sum_probs=82.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC-CcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-TKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.++|||||+|+||..+|+.+...|++|++|||+... .+.. ...++++++++||+|++++|...+ .+.++.
T Consensus 122 gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~-T~~li~-- 192 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDE-TRGMIN-- 192 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCch-hhcCcC--
Confidence 478999999999999999888889999999997432 2332 246899999999999999998766 676663
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
++.++. ++++.++||++.+.+-..+.+.+.+.+.
T Consensus 193 ~~~l~~--mk~ga~lIN~sRG~~vd~~aL~~aL~~g 226 (303)
T PRK06436 193 SKMLSL--FRKGLAIINVARADVVDKNDMLNFLRNH 226 (303)
T ss_pred HHHHhc--CCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 234433 4578899999999988788888888753
No 114
>PRK08605 D-lactate dehydrogenase; Validated
Probab=99.08 E-value=6.1e-10 Score=99.71 Aligned_cols=107 Identities=21% Similarity=0.256 Sum_probs=81.1
Q ss_pred CCeEEEEccchhhHHHHHHHH-hCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLM-KAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~-~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.++|||||+|.||..+|+.|+ ..|.+|++||+++.... ..++...+++++++++||+|++++|.... .+.++.
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~~~~~~~~l~ell~~aDvIvl~lP~t~~-t~~li~-- 219 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA---ATYVDYKDTIEEAVEGADIVTLHMPATKY-NHYLFN-- 219 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH---HhhccccCCHHHHHHhCCEEEEeCCCCcc-hhhhcC--
Confidence 479999999999999999994 46789999999865431 22345566899999999999999998765 444332
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
.+.++. ..++.++||++.+.....+.+.+.+...
T Consensus 220 ~~~l~~--mk~gailIN~sRG~~vd~~aL~~aL~~g 253 (332)
T PRK08605 220 ADLFKH--FKKGAVFVNCARGSLVDTKALLDALDNG 253 (332)
T ss_pred HHHHhc--CCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence 123332 3467899999999987778888877653
No 115
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=99.00 E-value=2.6e-09 Score=92.88 Aligned_cols=106 Identities=18% Similarity=0.145 Sum_probs=76.1
Q ss_pred CCCeEEEEccchhhHHHHHHHHhC--CCeEE-EEeCChhHHHHHHhC-CC-CCcCCHHHHhhcCCEEEEeCCCChhhHHH
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKA--GYKMA-VHDVNCNVMKMFSDM-GV-PTKETPFEVAEASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~--g~~V~-~~~r~~~~~~~l~~~-g~-~~~~~~~~~~~~adivi~~vp~~~~~~~~ 78 (316)
.++||||||+|.||..++..|.+. ++++. +|+|++++.+.+.+. |. ...++.+++++++|+|++|+|++.+ .+
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h--~e 82 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL--RA 82 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH--HH
Confidence 357999999999999999999874 67765 789999988776653 53 5678899999999999999998764 55
Q ss_pred HhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 79 VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
+... .++ .++.++..+.......+++.+...+.
T Consensus 83 ~~~~---aL~-----aGk~Vi~~s~gal~~~~~L~~~A~~~ 115 (271)
T PRK13302 83 IVEP---VLA-----AGKKAIVLSVGALLRNEDLIDLARQN 115 (271)
T ss_pred HHHH---HHH-----cCCcEEEecchhHHhHHHHHHHHHHc
Confidence 4432 232 23344445554444556666666554
No 116
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.98 E-value=1.8e-09 Score=95.66 Aligned_cols=108 Identities=18% Similarity=0.282 Sum_probs=82.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.||..+|+.|...|++|.+|+++++....... .....++++++++||+|++++|...+ .+.++. +
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt~~-T~~li~--~ 210 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNTPE-TVGIIN--Q 210 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCCHH-HHHHhH--H
Confidence 478999999999999999999999999999997654221111 11235789999999999999998876 777764 2
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
+.++. +.++.++||++-+..-..+.+.+.+.+.
T Consensus 211 ~~l~~--mk~ga~lIN~aRG~vVde~aL~~aL~~g 243 (312)
T PRK15469 211 QLLEQ--LPDGAYLLNLARGVHVVEDDLLAALDSG 243 (312)
T ss_pred HHHhc--CCCCcEEEECCCccccCHHHHHHHHhcC
Confidence 34443 4577899999998866667777777654
No 117
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.98 E-value=4.2e-08 Score=80.72 Aligned_cols=129 Identities=13% Similarity=0.154 Sum_probs=87.6
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
|||+|||. |.||..++..|.++||+|+ +++||+||+|+|-.. +.+++.++.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv~~--~~~~i~~~~ 52 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPIDA--ALNYIESYD 52 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCHHH--HHHHHHHhC
Confidence 68999988 9999999999999999986 258999999999665 566665431
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcC--ceEEEec--CCHHH
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAG--TLTFMVG--GSEDA 160 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g--~~~~~~~--~~~~~ 160 (316)
.+++|.++++.... +. .. ...-.+|++|... ...+ ...++.. .+++.
T Consensus 53 -----------~~v~Dv~SvK~~i~----~~-~~------------~~vg~HPMfGp~~-a~~~lf~~~iv~~~~~~~~~ 103 (197)
T PRK06444 53 -----------NNFVEISSVKWPFK----KY-SG------------KIVSIHPLFGPMS-YNDGVHRTVIFINDISRDNY 103 (197)
T ss_pred -----------CeEEeccccCHHHH----Hh-cC------------CEEecCCCCCCCc-CcccccceEEEECCCCCHHH
Confidence 27889999886422 11 00 1234568887332 2221 2233332 35667
Q ss_pred HHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHH
Q 021213 161 YQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNL 193 (316)
Q Consensus 161 ~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~ 193 (316)
.+.++++++ |.+++.+.....-..+-.++..
T Consensus 104 ~~~~~~l~~--G~~~~~~t~eeHD~~~A~ishL 134 (197)
T PRK06444 104 LNEINEMFR--GYHFVEMTADEHDLLMSEIMVK 134 (197)
T ss_pred HHHHHHHHc--CCEEEEeCHHHHHHHHHHHHHH
Confidence 788999998 7778888776666666555444
No 118
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.93 E-value=4.5e-09 Score=99.75 Aligned_cols=110 Identities=15% Similarity=0.193 Sum_probs=86.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|+||..+|+.+...|++|++|||+... +...+.|+...+++++++++||+|++++|...+ .+.++. +
T Consensus 138 gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~-T~~li~--~ 213 (525)
T TIGR01327 138 GKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQLGVELVDDLDELLARADFITVHTPLTPE-TRGLIG--A 213 (525)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEcCCHHHHHhhCCEEEEccCCChh-hccCcC--H
Confidence 478999999999999999999999999999985332 233445666567899999999999999998765 666663 2
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhch
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCI 120 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~ 120 (316)
+.++. +.++.++||++.+..-..+.+.+.+....
T Consensus 214 ~~l~~--mk~ga~lIN~aRG~~vde~aL~~aL~~g~ 247 (525)
T TIGR01327 214 EELAK--MKKGVIIVNCARGGIIDEAALYEALEEGH 247 (525)
T ss_pred HHHhc--CCCCeEEEEcCCCceeCHHHHHHHHHcCC
Confidence 34432 45788999999998777778888776643
No 119
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.91 E-value=5.6e-09 Score=99.14 Aligned_cols=108 Identities=17% Similarity=0.197 Sum_probs=85.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|+||..+|+.+...|++|.+|||+... +...+.|+... ++++++++||+|++++|...+ .+.++. .
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~-t~~li~--~ 214 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELV-SLDELLARADFITLHTPLTPE-TRGLIG--A 214 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEccCCChH-hhcCcC--H
Confidence 578999999999999999999999999999986432 23344566555 899999999999999998766 677663 2
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
+.++. ++++.++||++.+..-..+.+.+.+...
T Consensus 215 ~~l~~--mk~ga~lIN~aRG~~vde~aL~~aL~~g 247 (526)
T PRK13581 215 EELAK--MKPGVRIINCARGGIIDEAALAEALKSG 247 (526)
T ss_pred HHHhc--CCCCeEEEECCCCceeCHHHHHHHHhcC
Confidence 34433 4578899999999877777888777654
No 120
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.90 E-value=7.6e-09 Score=91.75 Aligned_cols=109 Identities=22% Similarity=0.227 Sum_probs=85.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.+++||||+|++|+.+|..+..-|.+|.+||+...+- .....+.....++++++++||+|++.+|-..+ ++.++..
T Consensus 142 gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~e-T~g~i~~-- 217 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPE-TRGLINA-- 217 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcc-hhcccCH--
Confidence 4799999999999999999999999999999943332 22234566678999999999999999998766 6776643
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. ++++.++||++-+..-....+.+.+.+.
T Consensus 218 ~~~a~--MK~gailIN~aRG~vVde~aL~~AL~~G 250 (324)
T COG0111 218 EELAK--MKPGAILINAARGGVVDEDALLAALDSG 250 (324)
T ss_pred HHHhh--CCCCeEEEECCCcceecHHHHHHHHHcC
Confidence 22322 5578899999998866667777777653
No 121
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.89 E-value=2.1e-09 Score=85.28 Aligned_cols=102 Identities=15% Similarity=0.200 Sum_probs=74.0
Q ss_pred EEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcC--------------CHHHHhhcCCEEEEeCCCCh
Q 021213 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE--------------TPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 8 IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~--------------~~~~~~~~adivi~~vp~~~ 73 (316)
|.|+|+|.||+.+|..|.++|++|+++.|++ +.+.+++.|+.... +..+..+.+|+||+|++..+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~ 79 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQ 79 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccc
Confidence 7899999999999999999999999999988 88888776643221 12245678999999998766
Q ss_pred hhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 74 HQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
+++++..+++.+. +...++. ..+..+..+.+.+..++
T Consensus 80 --~~~~l~~l~~~~~-----~~t~iv~-~qNG~g~~~~l~~~~~~ 116 (151)
T PF02558_consen 80 --LEQALQSLKPYLD-----PNTTIVS-LQNGMGNEEVLAEYFPR 116 (151)
T ss_dssp --HHHHHHHHCTGEE-----TTEEEEE-ESSSSSHHHHHHCHSTG
T ss_pred --hHHHHHHHhhccC-----CCcEEEE-EeCCCCcHHHHHHHcCC
Confidence 7888888877775 2334443 34444445666666543
No 122
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.88 E-value=5.3e-09 Score=81.76 Aligned_cols=82 Identities=23% Similarity=0.300 Sum_probs=60.9
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh-HHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHh-c
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN-VMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVY-N 81 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~-~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~-~ 81 (316)
..++|+|||.|..|.+.|.+|.++|.+|++..|..+ ..+...+.|..+ .+..|+++.+|+|++.+|+..+ .+++ .
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v-~~~~eAv~~aDvV~~L~PD~~q--~~vy~~ 79 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEV-MSVAEAVKKADVVMLLLPDEVQ--PEVYEE 79 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-EC-CEHHHHHHC-SEEEE-S-HHHH--HHHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCee-ccHHHHHhhCCEEEEeCChHHH--HHHHHH
Confidence 357999999999999999999999999999988776 677778888775 5789999999999999998653 6666 4
Q ss_pred CCCCccc
Q 021213 82 GPNGLLQ 88 (316)
Q Consensus 82 ~~~~~~~ 88 (316)
.+.+.++
T Consensus 80 ~I~p~l~ 86 (165)
T PF07991_consen 80 EIAPNLK 86 (165)
T ss_dssp HHHHHS-
T ss_pred HHHhhCC
Confidence 4444443
No 123
>PLN02928 oxidoreductase family protein
Probab=98.87 E-value=1.3e-08 Score=91.53 Aligned_cols=109 Identities=18% Similarity=0.217 Sum_probs=81.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHH------------HhCCCCCcCCHHHHhhcCCEEEEeCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF------------SDMGVPTKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l------------~~~g~~~~~~~~~~~~~adivi~~vp~~ 72 (316)
.++|||||+|.||..+|+.+...|.+|++|||+....... ...+. ...++++++++||+|++++|..
T Consensus 159 gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt 237 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLT 237 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEECCCCC
Confidence 4799999999999999999999999999999974321111 11112 3468999999999999999977
Q ss_pred hhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 73 SHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
.. .+.++. ++.++. ++++.++||++-+..-..+.+.+.+...
T Consensus 238 ~~-T~~li~--~~~l~~--Mk~ga~lINvaRG~lVde~AL~~AL~~g 279 (347)
T PLN02928 238 KE-TAGIVN--DEFLSS--MKKGALLVNIARGGLLDYDAVLAALESG 279 (347)
T ss_pred hH-hhcccC--HHHHhc--CCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 65 666653 234433 5578899999988765566777777653
No 124
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.85 E-value=2.1e-08 Score=87.10 Aligned_cols=104 Identities=16% Similarity=0.176 Sum_probs=73.1
Q ss_pred CeEEEEccchhhHHHHHHHHhCC--Ce-EEEEeCChhHHHHHHh-CCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhc
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG--YK-MAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g--~~-V~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~ 81 (316)
|||||||+|.||..++..+.+.+ ++ +.+|||++++.+.+.+ .+....++.++++.++|+|++|+|... ..+...
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~--~~~~~~ 79 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNA--VEEVVP 79 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHH--HHHHHH
Confidence 69999999999999999998763 55 5579999998877765 456677889998889999999998654 455443
Q ss_pred CCCCcccCCCCCCCeEEEEcCC---CCHHHHHHHHHHHhhc
Q 021213 82 GPNGLLQGGNSVRPQLLIDSST---IDPQTSRNISAAVSNC 119 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st---~~~~~~~~l~~~~~~~ 119 (316)
. .++ .++-++..|. ..+...+++.+...+.
T Consensus 80 ~---al~-----~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~ 112 (265)
T PRK13304 80 K---SLE-----NGKDVIIMSVGALADKELFLKLYKLAKEN 112 (265)
T ss_pred H---HHH-----cCCCEEEEchHHhcCHHHHHHHHHHHHHc
Confidence 2 232 2223344444 2344556666665553
No 125
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.85 E-value=2e-08 Score=87.93 Aligned_cols=94 Identities=20% Similarity=0.283 Sum_probs=72.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCc--CCHHHHhhcCCEEEEeCCCChhhHHHHhcC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK--ETPFEVAEASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~--~~~~~~~~~adivi~~vp~~~~~~~~v~~~ 82 (316)
.++++|+|+|.+|..+++.|...|++|++++|++++.+.+.+.|.... .+..+.++++|+||.++|...- .++.+..
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii-~~~~l~~ 229 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVL-TADVLSK 229 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHh-CHHHHhc
Confidence 478999999999999999999999999999999988777766665433 3567788999999999986531 1233321
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCHHH
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDPQT 108 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~~~ 108 (316)
..++.++||+++....+
T Consensus 230 ---------~k~~aliIDlas~Pg~t 246 (287)
T TIGR02853 230 ---------LPKHAVIIDLASKPGGT 246 (287)
T ss_pred ---------CCCCeEEEEeCcCCCCC
Confidence 23567999999976543
No 126
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.84 E-value=3.2e-08 Score=82.14 Aligned_cols=102 Identities=17% Similarity=0.255 Sum_probs=70.1
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-CCCCcCCHHHHh-hcCCEEEEeCCCChhhHHHHhc
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPTKETPFEVA-EASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~-~~adivi~~vp~~~~~~~~v~~ 81 (316)
..++|+|+|+|+||..+++.|.+.|++|+++|+++++++.+.+. +....++ .++. .+||+++.|.....- .++.+.
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~~I-~~~~~~ 104 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGGVI-NDDTIP 104 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEeccccccc-CHHHHH
Confidence 34789999999999999999999999999999999988877665 6554443 4444 379999977544432 334443
Q ss_pred CCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 82 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
.+ +.++|+...+..... .+-.+.+.+
T Consensus 105 ~l----------~~~~v~~~AN~~~~~-~~~~~~L~~ 130 (200)
T cd01075 105 QL----------KAKAIAGAANNQLAD-PRHGQMLHE 130 (200)
T ss_pred Hc----------CCCEEEECCcCccCC-HhHHHHHHH
Confidence 32 234777776654321 233444554
No 127
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.83 E-value=1.4e-08 Score=91.90 Aligned_cols=105 Identities=19% Similarity=0.238 Sum_probs=77.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChh---hHHHHhc
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSH---QVLDVYN 81 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~---~~~~v~~ 81 (316)
.++|||||+|+||..+++.+...|++|.+||+..... .+.....++++++++||+|++++|-... .....+.
T Consensus 116 gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~ 190 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA-----EGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLD 190 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc-----ccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCC
Confidence 4789999999999999999999999999999854321 1223346899999999999999996431 0233332
Q ss_pred CCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 82 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
++.++. +.++.++||++.+..-..+.+.+.+..
T Consensus 191 --~~~l~~--mk~gailIN~aRG~vVde~AL~~aL~~ 223 (381)
T PRK00257 191 --EAFLAS--LRPGAWLINASRGAVVDNQALREALLS 223 (381)
T ss_pred --HHHHhc--CCCCeEEEECCCCcccCHHHHHHHHHh
Confidence 123332 457789999999987777778777755
No 128
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.82 E-value=1.7e-08 Score=87.76 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=62.6
Q ss_pred CCCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcC
Q 021213 4 FDQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 4 ~~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~ 82 (316)
..++|+|||.| .||.+|+..|.++|++|++|++... ++++++++||+||+|++.+.. +.+.+
T Consensus 158 ~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~--------------~l~e~~~~ADIVIsavg~~~~-v~~~~-- 220 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST--------------DAKALCRQADIVVAAVGRPRL-IDADW-- 220 (301)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC--------------CHHHHHhcCCEEEEecCChhc-ccHhh--
Confidence 34789999996 9999999999999999999987632 688889999999999988754 55543
Q ss_pred CCCcccCCCCCCCeEEEEcCCCC
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
+ .++.++||++.+.
T Consensus 221 ----i-----k~GaiVIDvgin~ 234 (301)
T PRK14194 221 ----L-----KPGAVVIDVGINR 234 (301)
T ss_pred ----c-----cCCcEEEEecccc
Confidence 2 2567999998654
No 129
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.82 E-value=2.6e-08 Score=88.31 Aligned_cols=108 Identities=19% Similarity=0.248 Sum_probs=83.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.+++||||+|++|.++|+.+..-|.+|..|+|++. -+.-.+.+....+ +++++++||+|++.+|...+ .+..+..
T Consensus 146 gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~-T~hLin~-- 220 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPE-TRHLINA-- 220 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChH-HhhhcCH--
Confidence 47999999999999999999977889999999875 2222333455555 99999999999999998766 6665532
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. +.++.++||++-+..-..+.+.+.+.+.
T Consensus 221 ~~l~~--mk~ga~lVNtaRG~~VDe~ALi~AL~~g 253 (324)
T COG1052 221 EELAK--MKPGAILVNTARGGLVDEQALIDALKSG 253 (324)
T ss_pred HHHHh--CCCCeEEEECCCccccCHHHHHHHHHhC
Confidence 23332 5578899999998876667777777653
No 130
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=98.79 E-value=1.1e-07 Score=68.75 Aligned_cols=94 Identities=22% Similarity=0.249 Sum_probs=75.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhH
Q 021213 182 GNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLM 261 (316)
Q Consensus 182 g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (316)
..++..|+..|.+.+..++.++|...+|++.|+|..++.+.++.....+ .....| .+|++..++
T Consensus 2 ~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri~--~~~~~p--------------g~g~GG~Cl 65 (96)
T PF00984_consen 2 EEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRIG--PHYLRP--------------GPGFGGSCL 65 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTTT--SSS-S---------------SSS--SSCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCcccc--cccCCC--------------CCCCCCcch
Confidence 4789999999999999999999999999999999999999998753211 011111 235667899
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 021213 262 AKDLNLALASAKEVGVDCPLTSQAQDIYAK 291 (316)
Q Consensus 262 ~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 291 (316)
.||...+.+.+++.|.+.++++++.+..+.
T Consensus 66 pkD~~~L~~~~~~~g~~~~ll~~~~~~N~~ 95 (96)
T PF00984_consen 66 PKDPYALIYLAKELGYPPQLLEAVININER 95 (96)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHcCCCHHHHHHHHHhcCC
Confidence 999999999999999999999998877653
No 131
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.77 E-value=3.8e-08 Score=90.51 Aligned_cols=106 Identities=16% Similarity=0.200 Sum_probs=82.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|++|..+|+.+..-|.+|.+||+++.. ...+.....+++++++.||+|++++|...+ .+.++..
T Consensus 151 gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~----~~~~~~~~~~l~ell~~sDiVslh~Plt~~-T~~li~~-- 223 (409)
T PRK11790 151 GKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKL----PLGNARQVGSLEELLAQSDVVSLHVPETPS-TKNMIGA-- 223 (409)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCccc----ccCCceecCCHHHHHhhCCEEEEcCCCChH-HhhccCH--
Confidence 478999999999999999999999999999986432 112344556899999999999999998765 6666532
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. ++++.++||++.+..-..+.+.+.+...
T Consensus 224 ~~l~~--mk~ga~lIN~aRG~~vde~aL~~aL~~g 256 (409)
T PRK11790 224 EELAL--MKPGAILINASRGTVVDIDALADALKSG 256 (409)
T ss_pred HHHhc--CCCCeEEEECCCCcccCHHHHHHHHHcC
Confidence 23432 4578899999998876677888777654
No 132
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.74 E-value=5.8e-08 Score=86.47 Aligned_cols=108 Identities=12% Similarity=0.195 Sum_probs=81.6
Q ss_pred CCeEEEEccchhhHHHHHHHH-hCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLM-KAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~-~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++||||+|++|..+|+.+. .-|.+|..|+|.... +...+.+... .++++++++||+|++++|...+ .+.++..
T Consensus 145 gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~-~~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~-T~~li~~- 220 (323)
T PRK15409 145 HKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHK-EAEERFNARY-CDLDTLLQESDFVCIILPLTDE-THHLFGA- 220 (323)
T ss_pred CCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCch-hhHHhcCcEe-cCHHHHHHhCCEEEEeCCCChH-HhhccCH-
Confidence 478999999999999999987 678899999986432 1222334443 4899999999999999998766 6666532
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. +.++.++||++-+..-..+.+.+.+...
T Consensus 221 -~~l~~--mk~ga~lIN~aRG~vVde~AL~~AL~~g 253 (323)
T PRK15409 221 -EQFAK--MKSSAIFINAGRGPVVDENALIAALQKG 253 (323)
T ss_pred -HHHhc--CCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 23432 4578899999998866667777777653
No 133
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.70 E-value=6.8e-08 Score=85.72 Aligned_cols=106 Identities=17% Similarity=0.171 Sum_probs=80.6
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
..++|||||+|++|..+|+.+..-|.+|.+|||+.... +.+.. ..+.++++++||+|++++|-..+ .+.++..
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Plt~~-T~~li~~- 216 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NEEYE-RVSLEELLKTSDIISIHAPLNEK-TKNLIAY- 216 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----ccCce-eecHHHHhhcCCEEEEeCCCCch-hhcccCH-
Confidence 34789999999999999999998899999999964321 12332 45899999999999999997665 5655532
Q ss_pred CCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. ++++.++||++-+..-..+.+.+.+...
T Consensus 217 -~~~~~--Mk~~a~lIN~aRG~vVDe~AL~~AL~~g 249 (311)
T PRK08410 217 -KELKL--LKDGAILINVGRGGIVNEKDLAKALDEK 249 (311)
T ss_pred -HHHHh--CCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 23332 5578899999998866667777777653
No 134
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.70 E-value=3.7e-08 Score=87.65 Aligned_cols=100 Identities=11% Similarity=0.056 Sum_probs=71.2
Q ss_pred CCeEEEEccchhhHHHHHHHHh--CCCeEEEEeCChhHHHHHHhC----C--CCCcCCHHHHhhcCCEEEEeCCCChhhH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMK--AGYKMAVHDVNCNVMKMFSDM----G--VPTKETPFEVAEASDVVITMLPSSSHQV 76 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~--~g~~V~~~~r~~~~~~~l~~~----g--~~~~~~~~~~~~~adivi~~vp~~~~~~ 76 (316)
..+|+|||+|.||..++..+.. ...+|++|+|++++.+.+.+. | +..+.++++++++||+|+.|+|...
T Consensus 125 ~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~~--- 201 (314)
T PRK06141 125 ASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLSTE--- 201 (314)
T ss_pred CceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCCC---
Confidence 3689999999999999986554 447899999999998877653 4 4566889999999999988888642
Q ss_pred HHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Q 021213 77 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAV 116 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~ 116 (316)
.++.. +.+ .++. +|++.+..+...+++...+
T Consensus 202 -pvl~~--~~l-----~~g~-~i~~ig~~~~~~~El~~~~ 232 (314)
T PRK06141 202 -PLVRG--EWL-----KPGT-HLDLVGNFTPDMRECDDEA 232 (314)
T ss_pred -CEecH--HHc-----CCCC-EEEeeCCCCcccccCCHHH
Confidence 33221 122 2443 6676666655556665444
No 135
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.66 E-value=2.4e-07 Score=81.70 Aligned_cols=93 Identities=18% Similarity=0.275 Sum_probs=72.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCc--CCHHHHhhcCCEEEEeCCCChhhHHHHhcC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK--ETPFEVAEASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~--~~~~~~~~~adivi~~vp~~~~~~~~v~~~ 82 (316)
.+|++|||+|.+|..++..|.+.|.+|++++|++++.+...+.|.... .+..+.++++|+||.|+|...- .++.+..
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i-~~~~l~~ 230 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVL-TKEVLSK 230 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhh-hHHHHHc
Confidence 579999999999999999999999999999999888777777776543 3566788899999999986532 2333322
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCHH
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDPQ 107 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~~ 107 (316)
..++.++||.++...+
T Consensus 231 ---------~~~g~vIIDla~~pgg 246 (296)
T PRK08306 231 ---------MPPEALIIDLASKPGG 246 (296)
T ss_pred ---------CCCCcEEEEEccCCCC
Confidence 2356799999887644
No 136
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.66 E-value=4.2e-07 Score=69.02 Aligned_cols=106 Identities=24% Similarity=0.371 Sum_probs=77.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCC--CeE-EEEeCChhHHHHHHh-CCCCCcCCHHHHhh--cCCEEEEeCCCChhhHHHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG--YKM-AVHDVNCNVMKMFSD-MGVPTKETPFEVAE--ASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g--~~V-~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~adivi~~vp~~~~~~~~v 79 (316)
+||+|||+|.+|......+.+.. .++ .++|+++++.+.+.+ .|+...+|.+++++ +.|+|++|+|+..+ .+-+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h-~~~~ 79 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSH-AEIA 79 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGH-HHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcch-HHHH
Confidence 48999999999999999888873 454 478999998887654 68888899999987 79999999999876 3333
Q ss_pred hcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhch
Q 021213 80 YNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNCI 120 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~~ 120 (316)
.. .++. +..++++- -...+...+++.+...+.+
T Consensus 80 ~~----~l~~----g~~v~~EKP~~~~~~~~~~l~~~a~~~~ 113 (120)
T PF01408_consen 80 KK----ALEA----GKHVLVEKPLALTLEEAEELVEAAKEKG 113 (120)
T ss_dssp HH----HHHT----TSEEEEESSSSSSHHHHHHHHHHHHHHT
T ss_pred HH----HHHc----CCEEEEEcCCcCCHHHHHHHHHHHHHhC
Confidence 32 2221 22455553 3345777788887776654
No 137
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.64 E-value=1.3e-07 Score=85.40 Aligned_cols=105 Identities=18% Similarity=0.259 Sum_probs=75.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChh---hHHHHhc
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSH---QVLDVYN 81 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~---~~~~v~~ 81 (316)
.++|||||+|++|+.+|+.+..-|.+|.+||+..... ... ....++++++++||+|++++|-... +....+.
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~-~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~ 190 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR----GDE-GDFRSLDELVQEADILTFHTPLFKDGPYKTLHLAD 190 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc----ccc-cccCCHHHHHhhCCEEEEeCCCCCCcccccccccC
Confidence 4799999999999999999999999999999753211 111 1346899999999999999884321 0122221
Q ss_pred CCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 82 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
++.++. +.++.++||++-+..-..+.+.+.+..
T Consensus 191 --~~~l~~--mk~gailIN~aRG~vVDe~AL~~aL~~ 223 (378)
T PRK15438 191 --EKLIRS--LKPGAILINACRGAVVDNTALLTCLNE 223 (378)
T ss_pred --HHHHhc--CCCCcEEEECCCchhcCHHHHHHHHHh
Confidence 122322 457789999999886666777777755
No 138
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.64 E-value=1.4e-07 Score=82.14 Aligned_cols=75 Identities=16% Similarity=0.145 Sum_probs=61.2
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEe-CChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhc
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHD-VNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~-r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~ 81 (316)
..++|+||| .|.||.+||.+|.++|++|++|+ |++ ++++++++||+||+|++.+.. +++.+
T Consensus 157 ~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~~-v~~~~- 219 (296)
T PRK14188 157 SGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPEM-VKGDW- 219 (296)
T ss_pred CCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChhh-cchhe-
Confidence 357999999 99999999999999999999995 653 467888999999999998654 54443
Q ss_pred CCCCcccCCCCCCCeEEEEcCCCC
Q 021213 82 GPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
+ .++.++||++...
T Consensus 220 -----l-----k~GavVIDvGin~ 233 (296)
T PRK14188 220 -----I-----KPGATVIDVGINR 233 (296)
T ss_pred -----e-----cCCCEEEEcCCcc
Confidence 2 2567999998654
No 139
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=98.64 E-value=2e-07 Score=81.96 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=86.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||+|+|++|..+|++|..-|..+..+.|++...+...+.+.. ..+.++.+.++|+|++|+|...+ ++.++.+
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~-T~~liNk-- 237 (336)
T KOG0069|consen 162 GKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKE-TRHLINK-- 237 (336)
T ss_pred CCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHH-HHHHhhH--
Confidence 4799999999999999999999886666677877766666665555 56889999999999999998877 7777653
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
+.+.. +.++.++||++-+..-.-+.+.+.+...
T Consensus 238 ~~~~~--mk~g~vlVN~aRG~iide~~l~eaL~sG 270 (336)
T KOG0069|consen 238 KFIEK--MKDGAVLVNTARGAIIDEEALVEALKSG 270 (336)
T ss_pred HHHHh--cCCCeEEEeccccccccHHHHHHHHhcC
Confidence 34443 4577899999998876667777777653
No 140
>PRK06487 glycerate dehydrogenase; Provisional
Probab=98.62 E-value=2e-07 Score=82.91 Aligned_cols=103 Identities=15% Similarity=0.162 Sum_probs=78.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|++|..+|+.+..-|.+|.+|+|.... .... ..+++++++.||+|++++|-..+ .+.++..
T Consensus 148 gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~------~~~~-~~~l~ell~~sDiv~l~lPlt~~-T~~li~~-- 217 (317)
T PRK06487 148 GKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP------ARPD-RLPLDELLPQVDALTLHCPLTEH-TRHLIGA-- 217 (317)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc------cccc-ccCHHHHHHhCCEEEECCCCChH-HhcCcCH--
Confidence 478999999999999999999999999999986321 1111 34799999999999999997665 6665532
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
..++. ++++.++||++-+..-....+.+.+...
T Consensus 218 ~~~~~--mk~ga~lIN~aRG~vVde~AL~~AL~~g 250 (317)
T PRK06487 218 RELAL--MKPGALLINTARGGLVDEQALADALRSG 250 (317)
T ss_pred HHHhc--CCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 23432 4578899999988866667777777653
No 141
>PRK06932 glycerate dehydrogenase; Provisional
Probab=98.62 E-value=2e-07 Score=82.80 Aligned_cols=104 Identities=16% Similarity=0.167 Sum_probs=79.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
.++|||||+|.+|..+|+.+..-|.+|..|+++... .. . ....+.++++++||+|++++|-..+ .+.++..
T Consensus 147 gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~---~-~~~~~l~ell~~sDiv~l~~Plt~~-T~~li~~-- 217 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC---R-EGYTPFEEVLKQADIVTLHCPLTET-TQNLINA-- 217 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc---c-cccCCHHHHHHhCCEEEEcCCCChH-HhcccCH--
Confidence 479999999999999999999899999999986431 11 1 1235899999999999999997665 6665532
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
+.++. ++++.++||++-+..-....+.+.+...
T Consensus 218 ~~l~~--mk~ga~lIN~aRG~~Vde~AL~~aL~~g 250 (314)
T PRK06932 218 ETLAL--MKPTAFLINTGRGPLVDEQALLDALENG 250 (314)
T ss_pred HHHHh--CCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 23432 4578899999998866667777777653
No 142
>PLN02306 hydroxypyruvate reductase
Probab=98.60 E-value=3.2e-07 Score=83.43 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=79.3
Q ss_pred CCeEEEEccchhhHHHHHHHH-hCCCeEEEEeCChhH-HHHH-HhCC------------CCCcCCHHHHhhcCCEEEEeC
Q 021213 5 DQSVGFIGLGNMGFRMASNLM-KAGYKMAVHDVNCNV-MKMF-SDMG------------VPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~-~~g~~V~~~~r~~~~-~~~l-~~~g------------~~~~~~~~~~~~~adivi~~v 69 (316)
.++|||||+|.+|..+|+.+. .-|.+|.+||+++.. .+.. ...+ .....++++++++||+|++++
T Consensus 165 gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~ 244 (386)
T PLN02306 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHP 244 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeC
Confidence 478999999999999999986 678999999987642 1111 1111 122458999999999999999
Q ss_pred CCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 70 PSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 70 p~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
|-..+ .+.++.. ..++. +.++.++||++-+..-....+.+.+..
T Consensus 245 Plt~~-T~~lin~--~~l~~--MK~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 245 VLDKT-TYHLINK--ERLAL--MKKEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred CCChh-hhhhcCH--HHHHh--CCCCeEEEECCCccccCHHHHHHHHHh
Confidence 97655 6666542 23432 557889999998886555677777765
No 143
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.50 E-value=2.1e-07 Score=72.34 Aligned_cols=70 Identities=21% Similarity=0.209 Sum_probs=56.9
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCe-EEEEeCChhHHHHHHhCC------CCCcCCHHHHhhcCCEEEEeCCCCh
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYK-MAVHDVNCNVMKMFSDMG------VPTKETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~-V~~~~r~~~~~~~l~~~g------~~~~~~~~~~~~~adivi~~vp~~~ 73 (316)
...++.|||+|.+|.+++..|.+.|.+ |++++|+.++++.+.+.- ....++..+.+.++|+||.|+|.+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGM 87 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCC
Confidence 357899999999999999999999976 999999999988887632 1234456677889999999998763
No 144
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.48 E-value=4.1e-07 Score=80.92 Aligned_cols=94 Identities=20% Similarity=0.325 Sum_probs=66.2
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHh-CCCCCc--CCHHHHhhcCCEEEEeCCCChhhHHHH
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSD-MGVPTK--ETPFEVAEASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~-~g~~~~--~~~~~~~~~adivi~~vp~~~~~~~~v 79 (316)
..++|+|||+|.||..+++.|...| ++|++++|++++...+.+ .|.... ++..+.+.++|+||.|+|.+. ...+
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~--~~~~ 254 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPH--YAKI 254 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCc--hHHH
Confidence 3589999999999999999999865 789999999998876655 354322 345677789999999998765 2222
Q ss_pred hcCCCCcccCCCCCCCeEEEEcCC
Q 021213 80 YNGPNGLLQGGNSVRPQLLIDSST 103 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vi~~st 103 (316)
+... ++.. ..++.+++|.+.
T Consensus 255 ~~~~---~~~~-~~~~~~viDlav 274 (311)
T cd05213 255 VERA---MKKR-SGKPRLIVDLAV 274 (311)
T ss_pred HHHH---HhhC-CCCCeEEEEeCC
Confidence 2211 1100 114568889883
No 145
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.47 E-value=5.3e-07 Score=80.59 Aligned_cols=91 Identities=19% Similarity=0.230 Sum_probs=67.1
Q ss_pred CeEEEEccchhhHHHHHHHHh--CCCeEEEEeCChhHHHHHHh----CC--CCCcCCHHHHhhcCCEEEEeCCCChhhHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMK--AGYKMAVHDVNCNVMKMFSD----MG--VPTKETPFEVAEASDVVITMLPSSSHQVL 77 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~--~g~~V~~~~r~~~~~~~l~~----~g--~~~~~~~~~~~~~adivi~~vp~~~~~~~ 77 (316)
.++||||+|.+|...+..+.. ...+|.+|||++++.+.+.+ .| +..+.++++++++||+|++|+|+..
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~---- 204 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRK---- 204 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCC----
Confidence 689999999999997777654 34689999999999877654 35 3457899999999999999998753
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEcCCCCHH
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 107 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~st~~~~ 107 (316)
.++.. ..+ .++..|...++..|.
T Consensus 205 P~~~~--~~l-----~~g~~v~~vGs~~p~ 227 (325)
T TIGR02371 205 PVVKA--DWV-----SEGTHINAIGADAPG 227 (325)
T ss_pred cEecH--HHc-----CCCCEEEecCCCCcc
Confidence 22211 122 255667667766664
No 146
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=98.43 E-value=1.2e-06 Score=76.37 Aligned_cols=106 Identities=15% Similarity=0.094 Sum_probs=70.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC----CCCCcCCHHH-HhhcCCEEEEeCCCChh-hHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM----GVPTKETPFE-VAEASDVVITMLPSSSH-QVLD 78 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~----g~~~~~~~~~-~~~~adivi~~vp~~~~-~~~~ 78 (316)
.+++.|+|+|.+|.+++..|++.|++|++++|++++.+.+.+. +.....+..+ ...++|+||.|+|.... ...+
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~ 196 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDE 196 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCCC
Confidence 4679999999999999999999999999999999887766542 3212223333 23579999999997521 0111
Q ss_pred HhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 79 VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
.... ... ..++.+++|++..++.+ .+.+...+
T Consensus 197 ~~~~-~~~-----l~~~~~v~D~~y~p~~T--~ll~~A~~ 228 (270)
T TIGR00507 197 PPVP-AEK-----LKEGMVVYDMVYNPGET--PFLAEAKS 228 (270)
T ss_pred CCCC-HHH-----cCCCCEEEEeccCCCCC--HHHHHHHH
Confidence 1000 011 23556999999987765 34454444
No 147
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.42 E-value=9.9e-07 Score=76.27 Aligned_cols=76 Identities=17% Similarity=0.218 Sum_probs=60.9
Q ss_pred CCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcC
Q 021213 4 FDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 4 ~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~ 82 (316)
..++|+|||. |.||.+|+..|.++|+.|++|... +.++++.+++||+||++++.+.. ++..+
T Consensus 157 ~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~~~-v~~~~-- 219 (284)
T PRK14179 157 EGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR--------------TRNLAEVARKADILVVAIGRGHF-VTKEF-- 219 (284)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEecCcccc-CCHHH--
Confidence 3478999999 999999999999999999999432 13678888999999999987754 44433
Q ss_pred CCCcccCCCCCCCeEEEEcCCCC
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
+ .++.++||++.+.
T Consensus 220 ----i-----k~GavVIDvgin~ 233 (284)
T PRK14179 220 ----V-----KEGAVVIDVGMNR 233 (284)
T ss_pred ----c-----cCCcEEEEeccee
Confidence 2 2567999998664
No 148
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.40 E-value=1.7e-06 Score=76.67 Aligned_cols=65 Identities=18% Similarity=0.228 Sum_probs=49.7
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHH----HHhC--------CCCCcCCHHHHhhcCCEEEEeCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKM----FSDM--------GVPTKETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~----l~~~--------g~~~~~~~~~~~~~adivi~~vp~ 71 (316)
|||+|||+|.||..+|..++..|+ +|.++|++.+..+. +.+. .++.+.+.++ +++||+||++++.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~ 79 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGL 79 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCC
Confidence 699999999999999999999887 89999997664331 1111 1334466666 6899999999874
No 149
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.39 E-value=2.1e-06 Score=76.41 Aligned_cols=63 Identities=24% Similarity=0.323 Sum_probs=47.7
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHH----hC----C----CCCcCCHHHHhhcCCEEEEeC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFS----DM----G----VPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~----~~----g----~~~~~~~~~~~~~adivi~~v 69 (316)
|||+|||+|.||..++..++..|+ +|.++|+++++.+... +. + ++.+++. +.+++||+||+++
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~ 78 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITA 78 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECC
Confidence 699999999999999999999876 9999999887643321 11 1 1223445 5578999999985
No 150
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.36 E-value=2.6e-06 Score=76.78 Aligned_cols=70 Identities=19% Similarity=0.243 Sum_probs=57.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHhCC---CC-------CcCCHHHHhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMG---VP-------TKETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~g---~~-------~~~~~~~~~~~adivi~~vp~~~ 73 (316)
+|+|-|||+|.+|+.+|..|+++| ++|++-||+.++++++.+.. ++ -.....+++++.|+||.|.|...
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~ 80 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV 80 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh
Confidence 368999999999999999999999 99999999999998887653 11 12244577889999999999865
Q ss_pred h
Q 021213 74 H 74 (316)
Q Consensus 74 ~ 74 (316)
.
T Consensus 81 ~ 81 (389)
T COG1748 81 D 81 (389)
T ss_pred h
Confidence 4
No 151
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=98.34 E-value=3.5e-06 Score=77.75 Aligned_cols=91 Identities=16% Similarity=0.177 Sum_probs=69.1
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHH-HHhcC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVL-DVYNG 82 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~-~v~~~ 82 (316)
..++++|||+|.+|..+|..+...|.+|+++++++.+.......|... .+.+++++.+|+|++|+.+... +. +.+..
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~ADIVI~atGt~~i-I~~e~~~~ 330 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVETADIFVTATGNKDI-ITLEHMRR 330 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhcCCEEEECCCcccc-cCHHHHhc
Confidence 357899999999999999999999999999999887764444456553 4688999999999999754322 21 22221
Q ss_pred CCCcccCCCCCCCeEEEEcCCCC
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
+.++.+++|++...
T Consensus 331 ---------MKpGAiLINvGr~d 344 (476)
T PTZ00075 331 ---------MKNNAIVGNIGHFD 344 (476)
T ss_pred ---------cCCCcEEEEcCCCc
Confidence 34667999998875
No 152
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.31 E-value=4.3e-06 Score=71.23 Aligned_cols=75 Identities=16% Similarity=0.254 Sum_probs=58.5
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCC---Ce-EEEEeCChhHHHHHHhCCCCCcCCHHHH-hhcCCEEEEeCCCChhhHHH
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAG---YK-MAVHDVNCNVMKMFSDMGVPTKETPFEV-AEASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g---~~-V~~~~r~~~~~~~l~~~g~~~~~~~~~~-~~~adivi~~vp~~~~~~~~ 78 (316)
|++||||||+|.||..++..|.+.+ ++ +.+|+|++++.+.+.+. ....++++++ ...+|+|+.|-+... +++
T Consensus 1 ~~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~~~a--v~e 77 (267)
T PRK13301 1 MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAGQQA--IAE 77 (267)
T ss_pred CceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCCHHH--HHH
Confidence 5689999999999999999987643 44 44688888888777665 7788899996 588999999986433 565
Q ss_pred Hhc
Q 021213 79 VYN 81 (316)
Q Consensus 79 v~~ 81 (316)
...
T Consensus 78 ~~~ 80 (267)
T PRK13301 78 HAE 80 (267)
T ss_pred HHH
Confidence 543
No 153
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.29 E-value=7.8e-06 Score=67.07 Aligned_cols=103 Identities=15% Similarity=0.204 Sum_probs=70.6
Q ss_pred CeEEEEccchhhHHHHHHHHhC--CCe-EEEEeCChhHHHHHHh-CCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhc
Q 021213 6 QSVGFIGLGNMGFRMASNLMKA--GYK-MAVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~--g~~-V~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~ 81 (316)
|+||+||||.+|..+...+.+. .++ +.+|||+.+++..+.+ .+...+++++|.+++.|+++.|-... + +++...
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~-A-v~e~~~ 78 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPE-A-VREYVP 78 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCHH-H-HHHHhH
Confidence 5899999999999999877654 244 7889999999987766 45566689999999999999998543 3 666554
Q ss_pred CCCCcccCCCCCCCeEEEEcCCCC-HHHHHHHHHHH
Q 021213 82 GPNGLLQGGNSVRPQLLIDSSTID-PQTSRNISAAV 116 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st~~-~~~~~~l~~~~ 116 (316)
+ .++. ..+.+|+..+... ++...++.+..
T Consensus 79 ~---~L~~---g~d~iV~SVGALad~~l~erl~~la 108 (255)
T COG1712 79 K---ILKA---GIDVIVMSVGALADEGLRERLRELA 108 (255)
T ss_pred H---HHhc---CCCEEEEechhccChHHHHHHHHHH
Confidence 3 3321 1233555444443 44444444433
No 154
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.28 E-value=5.4e-06 Score=65.37 Aligned_cols=93 Identities=17% Similarity=0.173 Sum_probs=62.5
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
-.+++.|+|.|..|..+|+.|...|-+|++++++|-+.-.....|.+. .+.++++..+|++|.++....--..+-+..
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v-~~~~~a~~~adi~vtaTG~~~vi~~e~~~~- 99 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEV-MTLEEALRDADIFVTATGNKDVITGEHFRQ- 99 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EE-E-HHHHTTT-SEEEE-SSSSSSB-HHHHHH-
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEe-cCHHHHHhhCCEEEECCCCccccCHHHHHH-
Confidence 347899999999999999999999999999999997765555577765 468999999999999887543101232322
Q ss_pred CCcccCCCCCCCeEEEEcCCCCH
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDP 106 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~ 106 (316)
++.+.++.+.+....
T Consensus 100 --------mkdgail~n~Gh~d~ 114 (162)
T PF00670_consen 100 --------MKDGAILANAGHFDV 114 (162)
T ss_dssp --------S-TTEEEEESSSSTT
T ss_pred --------hcCCeEEeccCcCce
Confidence 346678888776553
No 155
>PLN00203 glutamyl-tRNA reductase
Probab=98.27 E-value=2.5e-06 Score=80.42 Aligned_cols=68 Identities=26% Similarity=0.334 Sum_probs=56.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhC--CCC----CcCCHHHHhhcCCEEEEeCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM--GVP----TKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~--g~~----~~~~~~~~~~~adivi~~vp~~ 72 (316)
..+|+|||+|.||..+++.|...|. +|++++|++++.+.+.+. +.. ..++..+++.++|+||.|+|.+
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~ 340 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSE 340 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCC
Confidence 5789999999999999999999996 799999999998888763 221 2346667889999999998764
No 156
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.27 E-value=7.7e-06 Score=75.05 Aligned_cols=90 Identities=20% Similarity=0.197 Sum_probs=69.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHH-HHhcCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVL-DVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~-~v~~~~ 83 (316)
.++|+|+|+|.+|..++..+...|.+|+++|+++.+.......|... .+.+++++.+|+||.|+.+... +. +.+..
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG~~~v-I~~~~~~~- 288 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATGNKDV-ITAEHMEA- 288 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCCCHHH-HHHHHHhc-
Confidence 47899999999999999999999999999999988765555566653 4678889999999999865432 32 22221
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..++.++++.+...
T Consensus 289 --------mK~GailiNvG~~d 302 (425)
T PRK05476 289 --------MKDGAILANIGHFD 302 (425)
T ss_pred --------CCCCCEEEEcCCCC
Confidence 23566888887655
No 157
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.26 E-value=9.6e-06 Score=71.55 Aligned_cols=73 Identities=14% Similarity=0.243 Sum_probs=54.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhC-CCeEE-EEeCCh-hHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNC-NVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~-g~~V~-~~~r~~-~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
+.||+|+|+|+||..++..+.+. +.++. +|+|++ ++.. ...++....+..+.+.++|+|++|+|+..+ ...+.
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th-~~~~~ 78 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATD-IPEQA 78 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccC-HHHHH
Confidence 57999999999999999999865 67866 579985 4332 223444556777777889999999998765 44443
No 158
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.26 E-value=9.4e-06 Score=74.04 Aligned_cols=92 Identities=17% Similarity=0.118 Sum_probs=69.6
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHH-HhcC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLD-VYNG 82 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~-v~~~ 82 (316)
..++|+|+|+|.+|..+++.+...|.+|+++++++.+.......|... .+.+++++.+|++|.++.+... +.. .+.
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v-~~leeal~~aDVVItaTG~~~v-I~~~~~~- 270 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRV-MTMEEAAKIGDIFITATGNKDV-IRGEHFE- 270 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEe-CCHHHHHhcCCEEEECCCCHHH-HHHHHHh-
Confidence 357899999999999999999999999999999998765555567644 3567888999999998875443 332 222
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCH
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDP 106 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~ 106 (316)
. ..++.++++.+....
T Consensus 271 ---~-----mK~GailiN~G~~~~ 286 (406)
T TIGR00936 271 ---N-----MKDGAIVANIGHFDV 286 (406)
T ss_pred ---c-----CCCCcEEEEECCCCc
Confidence 1 335678888877653
No 159
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.24 E-value=4.3e-06 Score=71.63 Aligned_cols=81 Identities=27% Similarity=0.345 Sum_probs=66.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhH-HHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhc-C
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN-G 82 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~-~ 82 (316)
.++|+|||+|+-|.+-|.+|.++|.+|++--|.... .+...+.|.. +.+++|+++.+|+|++-+|+-.+ .+++. .
T Consensus 18 gK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~-V~~v~ea~k~ADvim~L~PDe~q--~~vy~~~ 94 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFK-VYTVEEAAKRADVVMILLPDEQQ--KEVYEKE 94 (338)
T ss_pred CCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCE-eecHHHHhhcCCEEEEeCchhhH--HHHHHHH
Confidence 378999999999999999999999998877665444 6667777876 46899999999999999998764 67776 5
Q ss_pred CCCccc
Q 021213 83 PNGLLQ 88 (316)
Q Consensus 83 ~~~~~~ 88 (316)
+.+.++
T Consensus 95 I~p~Lk 100 (338)
T COG0059 95 IAPNLK 100 (338)
T ss_pred hhhhhc
Confidence 666664
No 160
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=98.24 E-value=4.8e-06 Score=74.22 Aligned_cols=68 Identities=26% Similarity=0.354 Sum_probs=49.9
Q ss_pred CCCC-CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHH--HH---Hh---CC----CCCcCCHHHHhhcCCEEE
Q 021213 1 MLFF-DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMK--MF---SD---MG----VPTKETPFEVAEASDVVI 66 (316)
Q Consensus 1 ~~~~-~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~--~l---~~---~g----~~~~~~~~~~~~~adivi 66 (316)
|+|. .+||+|||+|.||..++..++..|+ +|.++|+++++.+ .+ .. .+ +..+.+. +.+++||+||
T Consensus 1 ~~~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI 79 (321)
T PTZ00082 1 MTMIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVI 79 (321)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEE
Confidence 4443 4789999999999999999999995 8999999988532 11 11 11 2223455 5779999999
Q ss_pred EeC
Q 021213 67 TML 69 (316)
Q Consensus 67 ~~v 69 (316)
++.
T Consensus 80 ~ta 82 (321)
T PTZ00082 80 VTA 82 (321)
T ss_pred ECC
Confidence 965
No 161
>PRK07340 ornithine cyclodeaminase; Validated
Probab=98.22 E-value=8.4e-06 Score=72.21 Aligned_cols=92 Identities=17% Similarity=0.186 Sum_probs=68.4
Q ss_pred CCeEEEEccchhhHHHHHHHHh-CC-CeEEEEeCChhHHHHHHhC----CCCC-cCCHHHHhhcCCEEEEeCCCChhhHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMK-AG-YKMAVHDVNCNVMKMFSDM----GVPT-KETPFEVAEASDVVITMLPSSSHQVL 77 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~-~g-~~V~~~~r~~~~~~~l~~~----g~~~-~~~~~~~~~~adivi~~vp~~~~~~~ 77 (316)
..+++|||+|.+|...+..+.. .+ .+|.+|+|++++.+.+.+. ++.. +.+.+++++++|+||.|+|...
T Consensus 125 ~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~---- 200 (304)
T PRK07340 125 PGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT---- 200 (304)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC----
Confidence 3689999999999999999875 44 5799999999988776552 3333 4688889999999999999763
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEcCCCCHHH
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQT 108 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~ 108 (316)
.++.. .+ .++..|...++..|..
T Consensus 201 Pl~~~---~~-----~~g~hi~~iGs~~p~~ 223 (304)
T PRK07340 201 PVYPE---AA-----RAGRLVVAVGAFTPDM 223 (304)
T ss_pred ceeCc---cC-----CCCCEEEecCCCCCCc
Confidence 33321 12 2566777777766653
No 162
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.21 E-value=2.3e-06 Score=77.85 Aligned_cols=80 Identities=19% Similarity=0.280 Sum_probs=62.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeC------ChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDV------NCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r------~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~ 78 (316)
.++|+|||+|..|.+.|.+|...|++|++--| +.+..+.+.+.|... .++.|+++.||+|++.+|+.. -..
T Consensus 36 gKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt~--q~~ 112 (487)
T PRK05225 36 GKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDKQ--HSD 112 (487)
T ss_pred CCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChHH--HHH
Confidence 57999999999999999999999999994433 334555666678765 679999999999999999874 355
Q ss_pred HhcCCCCcc
Q 021213 79 VYNGPNGLL 87 (316)
Q Consensus 79 v~~~~~~~~ 87 (316)
+...+.+.+
T Consensus 113 v~~~i~p~L 121 (487)
T PRK05225 113 VVRAVQPLM 121 (487)
T ss_pred HHHHHHhhC
Confidence 555444444
No 163
>PLN02494 adenosylhomocysteinase
Probab=98.20 E-value=1.3e-05 Score=73.89 Aligned_cols=90 Identities=14% Similarity=0.165 Sum_probs=68.7
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhH-HHHhcC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQV-LDVYNG 82 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~-~~v~~~ 82 (316)
..++++|+|+|.+|..+|+.+...|.+|+++++++.+.......|.... +.+++++.+|+||.++.+... + .+.+..
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTGt~~v-I~~e~L~~ 330 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTGNKDI-IMVDHMRK 330 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCCCccc-hHHHHHhc
Confidence 3478999999999999999999999999999999877655555666543 678889999999998765432 2 333332
Q ss_pred CCCcccCCCCCCCeEEEEcCCC
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~ 104 (316)
+.++.++++++..
T Consensus 331 ---------MK~GAiLiNvGr~ 343 (477)
T PLN02494 331 ---------MKNNAIVCNIGHF 343 (477)
T ss_pred ---------CCCCCEEEEcCCC
Confidence 3356799998874
No 164
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=98.19 E-value=9.5e-06 Score=70.16 Aligned_cols=100 Identities=17% Similarity=0.224 Sum_probs=67.1
Q ss_pred CeEEEEcc-chhhHHHHHHHHhC-CCeEE-EEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcC
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~ 82 (316)
|||+|+|+ |.||..+++.+.+. ++++. ++|+++++.......++...++.+++++++|+||.++|... ..+.+..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~~--~~~~~~~ 79 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPEA--TLENLEF 79 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHHH--HHHHHHH
Confidence 69999998 99999999988864 57755 58888776544433456667889998888999998876544 3443322
Q ss_pred CCCcccCCCCCCCeEEEEcCCCCHHHHHHHHH
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTIDPQTSRNISA 114 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~ 114 (316)
.++. +..+++-.+...+...+++.+
T Consensus 80 ---al~~----G~~vvigttG~s~~~~~~l~~ 104 (257)
T PRK00048 80 ---ALEH----GKPLVIGTTGFTEEQLAELEE 104 (257)
T ss_pred ---HHHc----CCCEEEECCCCCHHHHHHHHH
Confidence 2221 223555544445666666665
No 165
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=98.18 E-value=6.1e-06 Score=69.81 Aligned_cols=74 Identities=20% Similarity=0.278 Sum_probs=55.7
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh--CCC---CCcCCHHHH-----hhcCCEEEEeCCCChhh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD--MGV---PTKETPFEV-----AEASDVVITMLPSSSHQ 75 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~--~g~---~~~~~~~~~-----~~~adivi~~vp~~~~~ 75 (316)
|+|.|||+|.+|..+|+.|.+.||+|++.++++++++.... ... ....+..++ +.++|+++.++.++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~-- 78 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDE-- 78 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCH--
Confidence 68999999999999999999999999999999999887443 321 122222333 357899999998765
Q ss_pred HHHHhc
Q 021213 76 VLDVYN 81 (316)
Q Consensus 76 ~~~v~~ 81 (316)
...++.
T Consensus 79 ~N~i~~ 84 (225)
T COG0569 79 VNSVLA 84 (225)
T ss_pred HHHHHH
Confidence 344443
No 166
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.16 E-value=1.9e-05 Score=72.27 Aligned_cols=89 Identities=15% Similarity=0.158 Sum_probs=68.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHH-hcCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDV-YNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v-~~~~ 83 (316)
..+|+|+|+|.+|..++..+...|.+|+++|+++.+.+.....|.... +.+++++.+|+||.|+..... +..- +.
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~~~-i~~~~l~-- 277 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNKDI-ITGEHFE-- 277 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCHHH-HHHHHHh--
Confidence 468999999999999999999999999999999999888888887543 457888899999999875443 3332 32
Q ss_pred CCcccCCCCCCCeEEEEcCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~ 104 (316)
. ..++.++++.+..
T Consensus 278 --~-----mk~GgilvnvG~~ 291 (413)
T cd00401 278 --Q-----MKDGAIVCNIGHF 291 (413)
T ss_pred --c-----CCCCcEEEEeCCC
Confidence 1 2245688787754
No 167
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.16 E-value=1.2e-05 Score=71.69 Aligned_cols=65 Identities=20% Similarity=0.248 Sum_probs=49.0
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHH--H--Hh----CC----CCCcCCHHHHhhcCCEEEEeC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKM--F--SD----MG----VPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~--l--~~----~g----~~~~~~~~~~~~~adivi~~v 69 (316)
..+||+|||+|.||..++..++..| .++.++|+++++.+. + .. .+ ++...+.+ .+++||+||++.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 4579999999999999999999988 689999998865322 1 11 11 22234555 779999999987
No 168
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=98.16 E-value=6.8e-06 Score=72.60 Aligned_cols=92 Identities=13% Similarity=0.168 Sum_probs=67.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHHHHHHhC-----C--CCCcCCHHHHhhcCCEEEEeCCCChhh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDM-----G--VPTKETPFEVAEASDVVITMLPSSSHQ 75 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~~-----g--~~~~~~~~~~~~~adivi~~vp~~~~~ 75 (316)
..+++|||+|..|...++.+...- .+|.+|+|++++.+.+.+. | +..++++++++++||+|+.|+++..
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~-- 194 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT-- 194 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC--
Confidence 368999999999999998887642 5799999999998776542 4 4457899999999999999998653
Q ss_pred HHHHhcCCCCcccCCCCCCCeEEEEcCCCCHH
Q 021213 76 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 107 (316)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~ 107 (316)
.++.. +.+ .++..|...++..|.
T Consensus 195 --P~~~~--~~l-----~pg~hV~aiGs~~p~ 217 (301)
T PRK06407 195 --PIFNR--KYL-----GDEYHVNLAGSNYPN 217 (301)
T ss_pred --cEecH--HHc-----CCCceEEecCCCCCC
Confidence 33321 123 245566656665554
No 169
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.15 E-value=5e-06 Score=76.97 Aligned_cols=69 Identities=22% Similarity=0.296 Sum_probs=56.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHh-CCCC--CcCCHHHHhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSD-MGVP--TKETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~-~g~~--~~~~~~~~~~~adivi~~vp~~~ 73 (316)
..+|+|||+|.||..++..|...| .+|++|+|++++.+.+.+ .|.. ...+..+.+.++|+||.|++.+.
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~ 252 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPH 252 (417)
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCC
Confidence 478999999999999999999999 789999999988776655 3322 22456677889999999987654
No 170
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=98.15 E-value=3e-06 Score=78.53 Aligned_cols=67 Identities=19% Similarity=0.339 Sum_probs=52.2
Q ss_pred CeEEEEccchhhHHHHH--HH----HhCCCeEEEEeCChhHHHHHHhC------------CCCCcCCHHHHhhcCCEEEE
Q 021213 6 QSVGFIGLGNMGFRMAS--NL----MKAGYKMAVHDVNCNVMKMFSDM------------GVPTKETPFEVAEASDVVIT 67 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~--~l----~~~g~~V~~~~r~~~~~~~l~~~------------g~~~~~~~~~~~~~adivi~ 67 (316)
+||+|||+|.||.+++. .+ ..+|++|.+||+++++++..... .+..++|..+++++||+||.
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 58999999999998655 33 45678999999999876654321 13456788899999999999
Q ss_pred eCCCC
Q 021213 68 MLPSS 72 (316)
Q Consensus 68 ~vp~~ 72 (316)
++|..
T Consensus 81 ai~~~ 85 (423)
T cd05297 81 TIQVG 85 (423)
T ss_pred eeEec
Confidence 99854
No 171
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.15 E-value=8e-06 Score=72.56 Aligned_cols=67 Identities=19% Similarity=0.260 Sum_probs=50.4
Q ss_pred CeEEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHHHH----HHhCC-----CCCcCCHHHHhhcCCEEEEeCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKM----FSDMG-----VPTKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~----l~~~g-----~~~~~~~~~~~~~adivi~~vp~~ 72 (316)
|||+|||+|.+|+++|..|+..| ++|.++|+++++.+. +.... ....++..+.+++||+||+|.+.+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~ 78 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCC
Confidence 58999999999999999999999 689999999876543 33211 111123345689999999998753
No 172
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=98.14 E-value=1.6e-05 Score=74.78 Aligned_cols=96 Identities=18% Similarity=0.275 Sum_probs=68.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-CCCC--cCCHHHHhhcCCEEEEeCCCChhhHHHHhc
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPT--KETPFEVAEASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~--~~~~~~~~~~adivi~~vp~~~~~~~~v~~ 81 (316)
.++++|+|+|.+|.+++..|.+.|++|++++|+.++.+.+.+. +... ..+..+ +.++|+||.|+|.+.. +..
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~-l~~~DiVInatP~g~~-~~~--- 406 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPE-LHRIDIIINCLPPSVT-IPK--- 406 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcc-cCCCCEEEEcCCCCCc-chh---
Confidence 4789999999999999999999999999999999888777553 2111 112222 4689999999997643 221
Q ss_pred CCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 82 GPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
.+ . .+++|+...++.+. +.+...+
T Consensus 407 ----~l------~-~~v~D~~Y~P~~T~--ll~~A~~ 430 (477)
T PRK09310 407 ----AF------P-PCVVDINTLPKHSP--YTQYARS 430 (477)
T ss_pred ----HH------h-hhEEeccCCCCCCH--HHHHHHH
Confidence 11 1 28889998876643 4344443
No 173
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.12 E-value=6.7e-06 Score=62.64 Aligned_cols=92 Identities=18% Similarity=0.202 Sum_probs=57.1
Q ss_pred eEEEEc-cchhhHHHHHHHHhC-CCeEEEE-eCChhHHHHHHhCC--CC-C---cCCHHHH-hhcCCEEEEeCCCChhhH
Q 021213 7 SVGFIG-LGNMGFRMASNLMKA-GYKMAVH-DVNCNVMKMFSDMG--VP-T---KETPFEV-AEASDVVITMLPSSSHQV 76 (316)
Q Consensus 7 ~IgiiG-~G~mG~~la~~l~~~-g~~V~~~-~r~~~~~~~l~~~g--~~-~---~~~~~~~-~~~adivi~~vp~~~~~~ 76 (316)
||+|+| .|.+|..++..|.+. ++++... +++.++.+.+...+ +. . ..+..+. ..++|+||+|+|+...
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~-- 78 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVS-- 78 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHH--
Confidence 689999 599999999999985 7777655 66544333333322 11 0 1111111 2489999999998864
Q ss_pred HHHhcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 77 LDVYNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
.+++..+... ..+++++||+|+..
T Consensus 79 ~~~~~~~~~~-----~~~g~~viD~s~~~ 102 (122)
T smart00859 79 KEIAPLLPKA-----AEAGVKVIDLSSAF 102 (122)
T ss_pred HHHHHHHHhh-----hcCCCEEEECCccc
Confidence 4443322111 23567999999764
No 174
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.11 E-value=7.8e-06 Score=62.45 Aligned_cols=99 Identities=23% Similarity=0.354 Sum_probs=61.6
Q ss_pred CeEEEEcc-chhhHHHHHHHHh-CCCeE-EEEeCChh-H----HHHH---HhCCCCCcCCHHHHhhcCCEEEEeCCCChh
Q 021213 6 QSVGFIGL-GNMGFRMASNLMK-AGYKM-AVHDVNCN-V----MKMF---SDMGVPTKETPFEVAEASDVVITMLPSSSH 74 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~-~g~~V-~~~~r~~~-~----~~~l---~~~g~~~~~~~~~~~~~adivi~~vp~~~~ 74 (316)
|||+|+|+ |+||+.+++.+.+ .++++ .+++|+++ . +-.+ ...|+...++.+++++.+|++|-++ .+..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~ 79 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDA 79 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHH
Confidence 68999999 9999999999998 67774 46788762 1 1111 1346777889999999999999987 3333
Q ss_pred hHHHHhcCCCCcccCCCCCCCeEEEEcCCCC-HHHHHHHHH
Q 021213 75 QVLDVYNGPNGLLQGGNSVRPQLLIDSSTID-PQTSRNISA 114 (316)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~-~~~~~~l~~ 114 (316)
+.+.++. .++ .+.-+|..+|+. ....+.+.+
T Consensus 80 -~~~~~~~---~~~-----~g~~~ViGTTG~~~~~~~~l~~ 111 (124)
T PF01113_consen 80 -VYDNLEY---ALK-----HGVPLVIGTTGFSDEQIDELEE 111 (124)
T ss_dssp -HHHHHHH---HHH-----HT-EEEEE-SSSHHHHHHHHHH
T ss_pred -hHHHHHH---HHh-----CCCCEEEECCCCCHHHHHHHHH
Confidence 4444432 222 233555556555 444455544
No 175
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.11 E-value=1.9e-05 Score=68.52 Aligned_cols=68 Identities=15% Similarity=0.197 Sum_probs=48.0
Q ss_pred CeEEEEccchhhHHHHHHHHhC-CCeEE-EEeCCh--hHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNC--NVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~-g~~V~-~~~r~~--~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~ 73 (316)
|||+|||+|+||..+++.+.+. +.++. ++++.. ++.......+....++.+++..+.|+|+.|+|...
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~ 73 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAA 73 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHH
Confidence 6999999999999999999876 45544 344432 22222222356677888877456999999998765
No 176
>PRK06823 ornithine cyclodeaminase; Validated
Probab=98.10 E-value=1.8e-05 Score=70.33 Aligned_cols=91 Identities=16% Similarity=0.233 Sum_probs=67.2
Q ss_pred CeEEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHHHHHHh----CCCC--CcCCHHHHhhcCCEEEEeCCCChhhHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSD----MGVP--TKETPFEVAEASDVVITMLPSSSHQVL 77 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~----~g~~--~~~~~~~~~~~adivi~~vp~~~~~~~ 77 (316)
.+++|||+|..+...++.+...- .+|.+|+|++++.+.+.+ .++. .+++.++++++||+|+.|+++..
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~---- 204 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSRE---- 204 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCC----
Confidence 68999999999999988877542 589999999999876653 2443 37889999999999999998653
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEcCCCCHH
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 107 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~st~~~~ 107 (316)
.++.. +.+ .++..|+..++..|.
T Consensus 205 P~~~~--~~l-----~~G~hi~~iGs~~p~ 227 (315)
T PRK06823 205 PLLQA--EDI-----QPGTHITAVGADSPG 227 (315)
T ss_pred ceeCH--HHc-----CCCcEEEecCCCCcc
Confidence 33321 122 256677777766664
No 177
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.09 E-value=9.8e-06 Score=71.99 Aligned_cols=66 Identities=21% Similarity=0.280 Sum_probs=50.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHHHHHHhC--------C--CCCcCCHHHHhhcCCEEEEeCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDM--------G--VPTKETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~~--------g--~~~~~~~~~~~~~adivi~~vp~ 71 (316)
+||+|||+|.+|.+++..|+..| ++|.++|+++++++.+... + ........+.+++||+||+++..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~ 78 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGA 78 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCC
Confidence 48999999999999999999999 6899999998876544321 1 11222334457899999998765
No 178
>PRK06046 alanine dehydrogenase; Validated
Probab=98.09 E-value=1.1e-05 Score=72.36 Aligned_cols=90 Identities=22% Similarity=0.266 Sum_probs=64.9
Q ss_pred CeEEEEccchhhHHHHHHHHhC-C-CeEEEEeCChhHHHHHHhC-----C--CCCcCCHHHHhhcCCEEEEeCCCChhhH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKA-G-YKMAVHDVNCNVMKMFSDM-----G--VPTKETPFEVAEASDVVITMLPSSSHQV 76 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~-g-~~V~~~~r~~~~~~~l~~~-----g--~~~~~~~~~~~~~adivi~~vp~~~~~~ 76 (316)
.+|+|||+|.+|...+..+... + ..|.+|||++++.+.+.+. + +..+++.+++++ +|+|++|+|+..
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~--- 205 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK--- 205 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC---
Confidence 5799999999999999998753 3 4799999999988776542 4 234678889887 999999999753
Q ss_pred HHHhcCCCCcccCCCCCCCeEEEEcCCCCHH
Q 021213 77 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 107 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~ 107 (316)
.++.. ..+ .++..|...++..|.
T Consensus 206 -P~~~~--~~l-----~~g~hV~~iGs~~p~ 228 (326)
T PRK06046 206 -PVVKA--EWI-----KEGTHINAIGADAPG 228 (326)
T ss_pred -cEecH--HHc-----CCCCEEEecCCCCCc
Confidence 22221 122 255566666666654
No 179
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=98.08 E-value=4.2e-05 Score=68.97 Aligned_cols=107 Identities=18% Similarity=0.222 Sum_probs=72.8
Q ss_pred CCCeEEEEccchhh-HHHHHHHHhCCC---eEEEEeCChhHHHHHHh-CCCC-CcCCHHHHhhc--CCEEEEeCCCChhh
Q 021213 4 FDQSVGFIGLGNMG-FRMASNLMKAGY---KMAVHDVNCNVMKMFSD-MGVP-TKETPFEVAEA--SDVVITMLPSSSHQ 75 (316)
Q Consensus 4 ~~~~IgiiG~G~mG-~~la~~l~~~g~---~V~~~~r~~~~~~~l~~-~g~~-~~~~~~~~~~~--adivi~~vp~~~~~ 75 (316)
+++||||||+|.++ ...+..+.+.+. -|.++|+++++++.+.+ .++. ..+|.++++++ .|+|++|+|+..+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H- 80 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALH- 80 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhh-
Confidence 45799999999555 568888888764 36678999999887766 5664 77899999875 5899999999877
Q ss_pred HHHHhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 76 VLDVYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
.+-++.. ++. +.++++.- -+......+++.+...+.
T Consensus 81 ~e~~~~A----L~a----GkhVl~EKPla~t~~ea~~l~~~a~~~ 117 (342)
T COG0673 81 AELALAA----LEA----GKHVLCEKPLALTLEEAEELVELARKA 117 (342)
T ss_pred HHHHHHH----Hhc----CCEEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 4444332 211 22344432 233456666666666553
No 180
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=98.08 E-value=1e-05 Score=74.41 Aligned_cols=69 Identities=10% Similarity=0.150 Sum_probs=57.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHhC-C-CC--CcCCHHHHhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM-G-VP--TKETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~-g-~~--~~~~~~~~~~~adivi~~vp~~~ 73 (316)
.++|.|||+|.||..++..|...| .+|++++|+.++.+.+.+. + .. ..++..+.+.++|+||.|++.+.
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLE 254 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCC
Confidence 478999999999999999999999 5799999999998888764 2 22 23455677889999999998764
No 181
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=98.08 E-value=1.3e-05 Score=70.95 Aligned_cols=62 Identities=26% Similarity=0.315 Sum_probs=45.9
Q ss_pred EEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHH----HHhC----C----CCCcCCHHHHhhcCCEEEEeCC
Q 021213 8 VGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKM----FSDM----G----VPTKETPFEVAEASDVVITMLP 70 (316)
Q Consensus 8 IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~----l~~~----g----~~~~~~~~~~~~~adivi~~vp 70 (316)
|+|||+|.||..+|..++..|+ +|+++|+++++.+. +.+. + +..+.+. +.+++||+||++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence 6899999999999999998876 99999999875421 1111 1 2223444 55799999999763
No 182
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.08 E-value=8.7e-06 Score=75.56 Aligned_cols=69 Identities=23% Similarity=0.317 Sum_probs=55.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHh-CCCCC--cCCHHHHhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSD-MGVPT--KETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~-~g~~~--~~~~~~~~~~adivi~~vp~~~ 73 (316)
.++|+|||+|.||..++..|...|. +|++++|++++...+.+ .|... ..+..+.+.++|+||.|+|.+.
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~ 254 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPH 254 (423)
T ss_pred CCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCC
Confidence 4789999999999999999999996 79999999998876655 34322 2345567789999999998754
No 183
>PRK08618 ornithine cyclodeaminase; Validated
Probab=98.06 E-value=2.1e-05 Score=70.42 Aligned_cols=91 Identities=13% Similarity=0.209 Sum_probs=66.8
Q ss_pred CCeEEEEccchhhHHHHHHHHh-CC-CeEEEEeCChhHHHHHHh-----CCC--CCcCCHHHHhhcCCEEEEeCCCChhh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMK-AG-YKMAVHDVNCNVMKMFSD-----MGV--PTKETPFEVAEASDVVITMLPSSSHQ 75 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~-~g-~~V~~~~r~~~~~~~l~~-----~g~--~~~~~~~~~~~~adivi~~vp~~~~~ 75 (316)
..+++|||+|.+|...+..+.. .+ .+|.+|+|++++.+.+.+ .++ ....+.+++++++|+|+.|+|....
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~p- 205 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKTP- 205 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCCc-
Confidence 3689999999999998888764 34 579999999999877764 243 3467888999999999999997632
Q ss_pred HHHHhcCCCCcccCCCCCCCeEEEEcCCCCHH
Q 021213 76 VLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 107 (316)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~ 107 (316)
++. ..+ .+++.|+...+..|.
T Consensus 206 ---~i~---~~l-----~~G~hV~~iGs~~p~ 226 (325)
T PRK08618 206 ---VFS---EKL-----KKGVHINAVGSFMPD 226 (325)
T ss_pred ---chH---Hhc-----CCCcEEEecCCCCcc
Confidence 221 122 256677777766664
No 184
>PRK08291 ectoine utilization protein EutC; Validated
Probab=98.06 E-value=1.4e-05 Score=71.82 Aligned_cols=68 Identities=18% Similarity=0.287 Sum_probs=56.1
Q ss_pred CeEEEEccchhhHHHHHHHHh-CC-CeEEEEeCChhHHHHHHhC-----CCC--CcCCHHHHhhcCCEEEEeCCCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMK-AG-YKMAVHDVNCNVMKMFSDM-----GVP--TKETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~-~g-~~V~~~~r~~~~~~~l~~~-----g~~--~~~~~~~~~~~adivi~~vp~~~ 73 (316)
++|+|||+|.+|.+.+..+.. .+ .+|.+|+|++++.+.+.+. |+. ...+.+++++++|+|+.|+|...
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~ 209 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEE 209 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCC
Confidence 689999999999999888875 34 6899999999998887652 443 35788899999999999998753
No 185
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.06 E-value=2.8e-05 Score=62.50 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=56.7
Q ss_pred CCCeEEEEccchh-hHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcC
Q 021213 4 FDQSVGFIGLGNM-GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 4 ~~~~IgiiG~G~m-G~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~ 82 (316)
...+|.|||+|.| |..++..|.+.|.+|++.+|+. .+..+.+.++|+||.|++.+. ++..
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~~-----ii~~ 103 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKPG-----LVKG 103 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCCc-----eecH
Confidence 3579999999997 8889999999999999999974 345667889999999998652 2211
Q ss_pred CCCcccCCCCCCCeEEEEcCCC
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~ 104 (316)
+.+ .++.++||.+..
T Consensus 104 --~~~-----~~~~viIDla~p 118 (168)
T cd01080 104 --DMV-----KPGAVVIDVGIN 118 (168)
T ss_pred --HHc-----cCCeEEEEccCC
Confidence 122 134688888753
No 186
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=98.05 E-value=1.7e-05 Score=71.05 Aligned_cols=67 Identities=15% Similarity=0.211 Sum_probs=55.5
Q ss_pred CeEEEEccchhhHHHHHHHHh-CC-CeEEEEeCChhHHHHHHhC-----CCC--CcCCHHHHhhcCCEEEEeCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMK-AG-YKMAVHDVNCNVMKMFSDM-----GVP--TKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~-~g-~~V~~~~r~~~~~~~l~~~-----g~~--~~~~~~~~~~~adivi~~vp~~ 72 (316)
.+++|||+|.+|...+..|.. .+ .+|++|+|++++.+.+.+. |+. ..++.+++++++|+|+.|+|..
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~ 205 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE 205 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC
Confidence 589999999999999999974 55 4799999999998877542 443 3578889999999999999875
No 187
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=98.05 E-value=1.6e-05 Score=72.20 Aligned_cols=68 Identities=26% Similarity=0.389 Sum_probs=57.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHh-CCC--CCcCCHHHHhhcCCEEEEeCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSD-MGV--PTKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~-~g~--~~~~~~~~~~~~adivi~~vp~~ 72 (316)
..++.|||+|.||.-.+++|..+| .+|++.||+.+++..+.+ .|. ...++..+.+.++|+||+|+..+
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~ 249 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAP 249 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCC
Confidence 468999999999999999999999 789999999999988876 353 33456677889999999998654
No 188
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=98.04 E-value=1.4e-05 Score=71.21 Aligned_cols=93 Identities=18% Similarity=0.278 Sum_probs=58.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHHHHHHh----CC--CCCcCCHHHHhhcCCEEEEeCCCChhhHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSD----MG--VPTKETPFEVAEASDVVITMLPSSSHQVL 77 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~----~g--~~~~~~~~~~~~~adivi~~vp~~~~~~~ 77 (316)
.+++|||+|..+...+..+...- .+|.+|+|++++++.+.+ .+ +..++|+++++++||+|+.|+|.... .
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~--~ 206 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTP--A 206 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSE--E
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCC--C
Confidence 58999999999999988877532 589999999998877654 23 34578999999999999999987641 0
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEcCCCCHH
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQ 107 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~st~~~~ 107 (316)
.++.. ..+ .++..|+..++..|.
T Consensus 207 P~~~~--~~l-----~~g~hi~~iGs~~~~ 229 (313)
T PF02423_consen 207 PVFDA--EWL-----KPGTHINAIGSYTPG 229 (313)
T ss_dssp ESB-G--GGS------TT-EEEE-S-SSTT
T ss_pred ccccH--HHc-----CCCcEEEEecCCCCc
Confidence 33321 122 356677777766554
No 189
>PRK07589 ornithine cyclodeaminase; Validated
Probab=98.02 E-value=2.3e-05 Score=70.34 Aligned_cols=94 Identities=12% Similarity=0.138 Sum_probs=66.1
Q ss_pred CeEEEEccchhhHHHHHHHHhC--CCeEEEEeCChhHHHHHHh----CC--CCCcCCHHHHhhcCCEEEEeCCCChhhHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKA--GYKMAVHDVNCNVMKMFSD----MG--VPTKETPFEVAEASDVVITMLPSSSHQVL 77 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~--g~~V~~~~r~~~~~~~l~~----~g--~~~~~~~~~~~~~adivi~~vp~~~~~~~ 77 (316)
.+++|||+|..+...+..+... -.+|.+|+|++++.+.+.+ .+ +..++++++++++||+|+.|+|+... .
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~~--~ 207 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKTN--A 207 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCC--C
Confidence 5799999999998887776643 2589999999998877653 23 34568999999999999999985431 1
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEcCCCCHHH
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDSSTIDPQT 108 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~ 108 (316)
.++.. +.+ .++..|...++..|..
T Consensus 208 Pvl~~--~~l-----kpG~hV~aIGs~~p~~ 231 (346)
T PRK07589 208 TILTD--DMV-----EPGMHINAVGGDCPGK 231 (346)
T ss_pred ceecH--HHc-----CCCcEEEecCCCCCCc
Confidence 33321 122 2555666666666643
No 190
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.00052 Score=56.64 Aligned_cols=189 Identities=14% Similarity=0.064 Sum_probs=114.5
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEE-EeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAV-HDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPN 84 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~-~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~ 84 (316)
+.+++||.|+.|.+....-.+.++.+.. -.|++++...+.+.-+-...+.+...+-.+++|.-+|+.. ...+...
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~~--~s~vaa~-- 86 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDAL--YSGVAAT-- 86 (289)
T ss_pred eEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHHH--HHHHHHh--
Confidence 6899999999999854444344444332 3678887777766422222333333444577788887652 3333321
Q ss_pred CcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccC--C-CChHhhh--cCceEEEecCCHH
Q 021213 85 GLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPV--S-GGVLAAE--AGTLTFMVGGSED 159 (316)
Q Consensus 85 ~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~--~-~~~~~~~--~g~~~~~~~~~~~ 159 (316)
.+ ..++++++.||..... .+-+.+.+.+ + ....-+|. + |.+.... +++...+..+|.-
T Consensus 87 -~~----~rpg~iv~HcSga~~~---~il~~~gr~g------~---~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~ 149 (289)
T COG5495 87 -SL----NRPGTIVAHCSGANGS---GILAPLGRQG------C---IPASIHPAFSFSGLDEDLSRLKDTIFGITEADDV 149 (289)
T ss_pred -cc----cCCCeEEEEccCCCch---hhhhhhhhcC------C---cceeecccccccCCHHHHHhCcccEEEeeccccc
Confidence 11 2366788888865433 2333444332 1 11111232 2 4343333 3443334356766
Q ss_pred HHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 021213 160 AYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISA 216 (316)
Q Consensus 160 ~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~ 216 (316)
-+.-++.+...+|.+.+.+-+ +.--.+....|...+.....+.|+..+-+..|.|.
T Consensus 150 g~ai~q~la~emgg~~f~V~~-~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq 205 (289)
T COG5495 150 GYAIVQSLALEMGGEPFCVRE-EARILYHAAAVHASNFIVTVLADALEIYRAAGDDQ 205 (289)
T ss_pred ccHHHHHHHHHhCCCceeech-hHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCC
Confidence 677888999999988776665 56666667777777777888999999999999873
No 191
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=97.99 E-value=1.8e-05 Score=72.44 Aligned_cols=110 Identities=15% Similarity=0.094 Sum_probs=68.7
Q ss_pred CeEEEEccchhhHH-HHHHHHhCCCeEEEEeCChhHHHHHHhCCCC------------------Cc--CCHHH---Hhhc
Q 021213 6 QSVGFIGLGNMGFR-MASNLMKAGYKMAVHDVNCNVMKMFSDMGVP------------------TK--ETPFE---VAEA 61 (316)
Q Consensus 6 ~~IgiiG~G~mG~~-la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~------------------~~--~~~~~---~~~~ 61 (316)
|||.++|+|+||++ +...|.++|++|++.|+++..++.++++|.- .. .+.++ .+.+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~ 80 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE 80 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence 68999999999985 4888889999999999999999999887621 00 12222 3347
Q ss_pred CCEEEEeCCCChhhHHHHhcCCCCcccCCCC--CCCeEEEEcCCCCHHHHHHHHHHHh
Q 021213 62 SDVVITMLPSSSHQVLDVYNGPNGLLQGGNS--VRPQLLIDSSTIDPQTSRNISAAVS 117 (316)
Q Consensus 62 adivi~~vp~~~~~~~~v~~~~~~~~~~~~~--~~~~~vi~~st~~~~~~~~l~~~~~ 117 (316)
+|+|++++.... ++.+...+.+.+..... ..+.+.|.+.-+.+.....+.+.+.
T Consensus 81 ~dlvt~~v~~~~--~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~~ng~~L~~~V~ 136 (381)
T PRK02318 81 ADLVTTAVGPNI--LPFIAPLIAKGLKKRKAQGNTKPLNIIACENMIRGTSFLKKHVL 136 (381)
T ss_pred CCEEEeCCCccc--chhHHHHHHHHHHHHHHcCCCCCCEEEecCChhhHHHHHHHHHH
Confidence 899988886543 44554444333321100 0112334444445555556665543
No 192
>PRK04148 hypothetical protein; Provisional
Probab=97.97 E-value=5.6e-05 Score=57.84 Aligned_cols=68 Identities=18% Similarity=0.433 Sum_probs=56.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC-----CcCCHHHHhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----TKETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~-----~~~~~~~~~~~adivi~~vp~~~ 73 (316)
.++|.+||+| .|..+|..|.+.|++|++.|.+++.++.+++.+.. ......+.-+++|+|..+=|...
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~e 89 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRD 89 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHH
Confidence 3689999999 99999999999999999999999999888877643 23344567789999999887654
No 193
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.97 E-value=4.7e-05 Score=66.59 Aligned_cols=92 Identities=16% Similarity=0.195 Sum_probs=62.9
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhC-CCeEE-EEeCChhH--HHHHHhCCCCC-cCCHHHHhh-----cCCEEEEeCCCC
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNCNV--MKMFSDMGVPT-KETPFEVAE-----ASDVVITMLPSS 72 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~-g~~V~-~~~r~~~~--~~~l~~~g~~~-~~~~~~~~~-----~adivi~~vp~~ 72 (316)
|.++||||||+|++|+.+...+.+. +.++. ++|++++. .+...+.|+.. .++.+++++ +.|+||.++|..
T Consensus 2 m~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~ 81 (302)
T PRK08300 2 MSKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAG 81 (302)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHH
Confidence 4468999999999999988888764 45654 67888764 24445577765 467888874 588899999987
Q ss_pred hhhHHHHhcCCCCcccCCCCCCCeEEEEcCCC
Q 021213 73 SHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~ 104 (316)
.+ .+..... . ..++.+||.+..
T Consensus 82 ~H--~e~a~~a---~-----eaGk~VID~sPA 103 (302)
T PRK08300 82 AH--VRHAAKL---R-----EAGIRAIDLTPA 103 (302)
T ss_pred HH--HHHHHHH---H-----HcCCeEEECCcc
Confidence 65 3332211 1 245577776654
No 194
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=97.97 E-value=1.1e-05 Score=62.97 Aligned_cols=65 Identities=23% Similarity=0.340 Sum_probs=49.3
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCC--CeEEEEeCChhHHHHHH----h----C--CCCCcCCHHHHhhcCCEEEEeCC
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFS----D----M--GVPTKETPFEVAEASDVVITMLP 70 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~----~----~--g~~~~~~~~~~~~~adivi~~vp 70 (316)
|||+|||+ |.+|..++..|...+ .++.++|+++++++... . . .........+.+++||+||++..
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG 78 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence 69999999 999999999999887 58999999977653332 1 1 12333456677889999999753
No 195
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.93 E-value=7.3e-06 Score=62.36 Aligned_cols=89 Identities=21% Similarity=0.250 Sum_probs=56.4
Q ss_pred eEEEEc-cchhhHHHHHHHHhCC-Ce-EEEEeCChhHHHHHHhC-----C---CCCcCCHHHHhhcCCEEEEeCCCChhh
Q 021213 7 SVGFIG-LGNMGFRMASNLMKAG-YK-MAVHDVNCNVMKMFSDM-----G---VPTKETPFEVAEASDVVITMLPSSSHQ 75 (316)
Q Consensus 7 ~IgiiG-~G~mG~~la~~l~~~g-~~-V~~~~r~~~~~~~l~~~-----g---~~~~~~~~~~~~~adivi~~vp~~~~~ 75 (316)
||+||| .|++|..+.+.|.++- ++ +.++.++.+.-+.+... + ....+...+.++++|+||+|+|+..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~-- 78 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGA-- 78 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHH--
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhH--
Confidence 799999 9999999999999854 24 55667766332223221 1 2222223344589999999999765
Q ss_pred HHHHhcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 76 VLDVYNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+....+ ++ ++..|||.|+..
T Consensus 79 ~~~~~~~~---~~-----~g~~ViD~s~~~ 100 (121)
T PF01118_consen 79 SKELAPKL---LK-----AGIKVIDLSGDF 100 (121)
T ss_dssp HHHHHHHH---HH-----TTSEEEESSSTT
T ss_pred HHHHHHHH---hh-----CCcEEEeCCHHH
Confidence 34444322 22 456899998754
No 196
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.93 E-value=6e-05 Score=66.86 Aligned_cols=92 Identities=20% Similarity=0.240 Sum_probs=68.0
Q ss_pred CeEEEEccchhhHHHHHHHHhC--CCeEEEEeCChhHHHHHHh----CC---CCCcCCHHHHhhcCCEEEEeCCCChhhH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKA--GYKMAVHDVNCNVMKMFSD----MG---VPTKETPFEVAEASDVVITMLPSSSHQV 76 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~--g~~V~~~~r~~~~~~~l~~----~g---~~~~~~~~~~~~~adivi~~vp~~~~~~ 76 (316)
..++|||+|..+......+..- .-+|.+|+|+++..+.+.. .+ +..+.|.++++++||+|+.|+|+..
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~--- 207 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE--- 207 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC---
Confidence 5789999999999999888764 3579999999998877753 33 4678899999999999999999753
Q ss_pred HHHhcCCCCcccCCCCCCCeEEEEcCCCCHHH
Q 021213 77 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQT 108 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~ 108 (316)
.++.. +.+ .++..|..+++..|..
T Consensus 208 -Pil~~--~~l-----~~G~hI~aiGad~p~k 231 (330)
T COG2423 208 -PVLKA--EWL-----KPGTHINAIGADAPGK 231 (330)
T ss_pred -CeecH--hhc-----CCCcEEEecCCCCccc
Confidence 33321 223 2555565666655543
No 197
>PRK11579 putative oxidoreductase; Provisional
Probab=97.92 E-value=0.00016 Score=65.54 Aligned_cols=104 Identities=20% Similarity=0.325 Sum_probs=67.4
Q ss_pred CCeEEEEccchhhHH-HHHHHHhC-CCeEE-EEeCChhHHHHHHhC-CCCCcCCHHHHhh--cCCEEEEeCCCChhhHHH
Q 021213 5 DQSVGFIGLGNMGFR-MASNLMKA-GYKMA-VHDVNCNVMKMFSDM-GVPTKETPFEVAE--ASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~-la~~l~~~-g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~~--~adivi~~vp~~~~~~~~ 78 (316)
++||||||+|.+|.. .+..+.+. +.++. ++|+++++.. .+. +....+|.+++++ +.|+|++|+|+..+ .+-
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H-~~~ 80 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK--ADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTH-FPL 80 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH--hhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHH-HHH
Confidence 479999999999974 56666553 56765 6899887654 223 4556789999986 57999999999876 444
Q ss_pred HhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 79 VYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
+... ++ .+.+++++- -+......+++.+...+.
T Consensus 81 ~~~a----l~----aGkhVl~EKPla~t~~ea~~l~~~a~~~ 114 (346)
T PRK11579 81 AKAA----LE----AGKHVVVDKPFTVTLSQARELDALAKSA 114 (346)
T ss_pred HHHH----HH----CCCeEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 4332 21 122355442 223455566666655543
No 198
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.92 E-value=2.7e-05 Score=67.66 Aligned_cols=62 Identities=26% Similarity=0.412 Sum_probs=48.6
Q ss_pred EEEEcc-chhhHHHHHHHHhCC----CeEEEEeCChhHHHHHHh-------C----CCCCcCCHHHHhhcCCEEEEeC
Q 021213 8 VGFIGL-GNMGFRMASNLMKAG----YKMAVHDVNCNVMKMFSD-------M----GVPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 8 IgiiG~-G~mG~~la~~l~~~g----~~V~~~~r~~~~~~~l~~-------~----g~~~~~~~~~~~~~adivi~~v 69 (316)
|+|||+ |.||..++..|+..| .+|.+||+++++++.... . .+..++++.+++++||+||++.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~ 78 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITA 78 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECC
Confidence 689999 999999999999988 799999998876433221 1 2334556678899999999964
No 199
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.92 E-value=0.0001 Score=64.02 Aligned_cols=104 Identities=16% Similarity=0.319 Sum_probs=65.3
Q ss_pred CeEEEEc-cchhhHHHHHHHHh-CCCeEE-EEeCC-hhH----HHHHHh---CCCCCcCCHHHHhhcCCEEEEeCCCChh
Q 021213 6 QSVGFIG-LGNMGFRMASNLMK-AGYKMA-VHDVN-CNV----MKMFSD---MGVPTKETPFEVAEASDVVITMLPSSSH 74 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~-~g~~V~-~~~r~-~~~----~~~l~~---~g~~~~~~~~~~~~~adivi~~vp~~~~ 74 (316)
+||+|+| +|.||..+++.+.+ .++++. ++||+ ++. ...+.. .|+...++++++...+|+||.|+|...
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p~~- 80 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTPEG- 80 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCChHH-
Confidence 6999999 69999999999986 467755 57853 222 111211 345666788887557999999987654
Q ss_pred hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 75 QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
..+.+.. .++. +..+++-++...+...+.+.+...+
T Consensus 81 -~~~~~~~---al~~----g~~vVigttg~~~e~~~~l~~aA~~ 116 (266)
T TIGR00036 81 -VLNHLKF---ALEH----GVRLVVGTTGFSEEDKQELADLAEK 116 (266)
T ss_pred -HHHHHHH---HHHC----CCCEEEECCCCCHHHHHHHHHHHhc
Confidence 3444332 2221 2235555555556666666665544
No 200
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.91 E-value=0.0051 Score=55.28 Aligned_cols=210 Identities=16% Similarity=0.154 Sum_probs=120.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHH----hC-C--------------------CCCcCCHHHHh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFS----DM-G--------------------VPTKETPFEVA 59 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~----~~-g--------------------~~~~~~~~~~~ 59 (316)
.+|-|+|+|..+.-+|..+.+.+. .|-+.+|...+.+.+- +. + -....+.+++.
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i~ 81 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEIE 81 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHhc
Confidence 479999999999999999988774 6999999766654443 21 1 12234666777
Q ss_pred hcCCEEEEeCCCChhhHHHHhcCCCC-cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchh----hhccCCCCCccEE
Q 021213 60 EASDVVITMLPSSSHQVLDVYNGPNG-LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCIL----KEKKDSWENPVML 134 (316)
Q Consensus 60 ~~adivi~~vp~~~~~~~~v~~~~~~-~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~----~~~~g~~~~~~~~ 134 (316)
.+=|.+|+|||.+. -.+|++++.. .++. .+ ++|+.+.+.+.. .-+...+...+. .-.-.|+....+.
T Consensus 82 g~WdtlILavtaDA--Y~~VL~ql~~~~L~~---vk-~iVLvSPtfGS~--~lv~~~l~~~~~~~EVISFStY~gdTr~~ 153 (429)
T PF10100_consen 82 GEWDTLILAVTADA--YLDVLQQLPWEVLKR---VK-SIVLVSPTFGSH--LLVKGFLNDLGPDAEVISFSTYYGDTRWS 153 (429)
T ss_pred ccccEEEEEechHH--HHHHHHhcCHHHHhh---CC-EEEEECcccchH--HHHHHHHHhcCCCceEEEeecccccceec
Confidence 78899999999887 5899988753 3332 22 244333333322 233333333210 0011111112222
Q ss_pred eccCCCCh-HhhhcCceEEEec---CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHH-------------HHHH-----
Q 021213 135 DAPVSGGV-LAAEAGTLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK-------------ICNN----- 192 (316)
Q Consensus 135 ~~p~~~~~-~~~~~g~~~~~~~---~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k-------------~~~n----- 192 (316)
+....... ..+.+. .+++| ++.....++..+++.+|..+..+...=.|+.-. ...|
T Consensus 154 d~~~~~~vlt~~vK~--kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~ 231 (429)
T PF10100_consen 154 DGEQPNRVLTTAVKK--KIYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEE 231 (429)
T ss_pred cCCCcceehhhhhhc--eEEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCC
Confidence 22111011 112222 23343 245567899999999997665555432333210 0000
Q ss_pred ------------------HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 021213 193 ------------------LTMAVSMLGVSEALTLGQSLGISASTLTKILNS 225 (316)
Q Consensus 193 ------------------~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~ 225 (316)
....-+...+.|.+.+..+.|+++=-+++.+..
T Consensus 232 ~~~~kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~NLLkFm~d 282 (429)
T PF10100_consen 232 DGVPKYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPFNLLKFMND 282 (429)
T ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhcc
Confidence 112234667889999999999988777777765
No 201
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.90 E-value=4.1e-05 Score=67.03 Aligned_cols=69 Identities=10% Similarity=0.129 Sum_probs=54.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHhCC-----CCCcCCHHHHhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMG-----VPTKETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~g-----~~~~~~~~~~~~~adivi~~vp~~~ 73 (316)
.+++.|+|+|.+|.+++..|...| .+|++++|+.++.+.+.+.- +....+..+.+.++|+||-|+|...
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~ 197 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGM 197 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCC
Confidence 468999999999999999999999 79999999999887776531 1111133456678999999999763
No 202
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.90 E-value=3.3e-05 Score=67.71 Aligned_cols=67 Identities=19% Similarity=0.298 Sum_probs=53.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhC-----C-C--CCcCCHHHHhhcCCEEEEeCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-----G-V--PTKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-----g-~--~~~~~~~~~~~~adivi~~vp~~ 72 (316)
++|.|||+|.+|.+++..|.+.|. +|+++||+.++++.+.+. . . ....+..+.++++|+||-|+|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence 589999999999999999999996 799999999998877652 1 1 11234455677899999999865
No 203
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.87 E-value=3.3e-05 Score=69.63 Aligned_cols=91 Identities=24% Similarity=0.248 Sum_probs=56.7
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhC-CCeEEEEeCChhHHHHHHhC-----CC-C-CcCCHH-HHhhcCCEEEEeCCCChh
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDM-----GV-P-TKETPF-EVAEASDVVITMLPSSSH 74 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~~-----g~-~-~~~~~~-~~~~~adivi~~vp~~~~ 74 (316)
++||+|||+ |.+|..+++.|.+. ++++..+.++.+..+.+.+. +. . ...+.+ ...+++|+||+|+|+..+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~ 81 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVS 81 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHH
Confidence 369999997 99999999999976 56765543322322222211 11 0 122222 245689999999999764
Q ss_pred hHHHHhcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 75 QVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
.++.... + ..+..|||.|+..
T Consensus 82 --~~~v~~a---~-----~aG~~VID~S~~f 102 (343)
T PRK00436 82 --MDLAPQL---L-----EAGVKVIDLSADF 102 (343)
T ss_pred --HHHHHHH---H-----hCCCEEEECCccc
Confidence 4444322 1 1456899999765
No 204
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.87 E-value=3.4e-05 Score=70.26 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=52.2
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-CCCC---c---CCHHHHhhcCCEEEEeCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPT---K---ETPFEVAEASDVVITMLP 70 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~---~---~~~~~~~~~adivi~~vp 70 (316)
.+|.|||+|.+|...++.+...|.+|+++||++++.+.+... +... . .+..+.++++|+||.|++
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~ 239 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVL 239 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccc
Confidence 579999999999999999999999999999999888777653 3211 1 234566789999999874
No 205
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.86 E-value=5.9e-05 Score=62.41 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=53.9
Q ss_pred CCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-----CCC--C--cCC---HHHHhhcCCEEEEeCC
Q 021213 4 FDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-----GVP--T--KET---PFEVAEASDVVITMLP 70 (316)
Q Consensus 4 ~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-----g~~--~--~~~---~~~~~~~adivi~~vp 70 (316)
..+++.|+|. |.+|..++..|++.|++|++++|+.++.+.+.+. +.. . ..+ ..++++++|+||.++|
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~ 106 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGA 106 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCC
Confidence 3578999995 9999999999999999999999999887666441 211 1 122 2467789999999998
Q ss_pred CCh
Q 021213 71 SSS 73 (316)
Q Consensus 71 ~~~ 73 (316)
.+.
T Consensus 107 ~g~ 109 (194)
T cd01078 107 AGV 109 (194)
T ss_pred CCc
Confidence 764
No 206
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.80 E-value=0.00017 Score=73.13 Aligned_cols=70 Identities=24% Similarity=0.250 Sum_probs=54.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-Ce-------------EEEEeCChhHHHHHHhC--C---CCC-cCCHHHHh---hc
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-YK-------------MAVHDVNCNVMKMFSDM--G---VPT-KETPFEVA---EA 61 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~~-------------V~~~~r~~~~~~~l~~~--g---~~~-~~~~~~~~---~~ 61 (316)
++||+|||+|.||...+..|++.. .+ |++.|+++++++.+.+. + +.. +.+.+++. ++
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~ 648 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQ 648 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcC
Confidence 468999999999999999998753 33 89999999988877652 3 222 45655554 57
Q ss_pred CCEEEEeCCCChh
Q 021213 62 SDVVITMLPSSSH 74 (316)
Q Consensus 62 adivi~~vp~~~~ 74 (316)
+|+||+|+|...+
T Consensus 649 ~DaVIsalP~~~H 661 (1042)
T PLN02819 649 VDVVISLLPASCH 661 (1042)
T ss_pred CCEEEECCCchhh
Confidence 9999999998765
No 207
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.79 E-value=7.7e-05 Score=67.96 Aligned_cols=67 Identities=21% Similarity=0.299 Sum_probs=55.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCC---CeEEEEeCChhHHHHHHh----C--C---CCCcCCHHHHhhcCCEEEEeCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG---YKMAVHDVNCNVMKMFSD----M--G---VPTKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g---~~V~~~~r~~~~~~~l~~----~--g---~~~~~~~~~~~~~adivi~~vp~~ 72 (316)
.+++|||+|.++......+...- .+|.+|+|++++.+.+.+ . + +..+++.++++++||+|+.|+++.
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 68999999999999999887632 489999999998877543 2 2 445789999999999999999753
No 208
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.79 E-value=0.00019 Score=50.98 Aligned_cols=45 Identities=27% Similarity=0.432 Sum_probs=39.5
Q ss_pred CCCeEEEEccchhhHHHHHHHHhC-CCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChh
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSH 74 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~ 74 (316)
..++++|+|+|.+|..++..|.+. +.+|.+||| |++|.|++....
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~~~ 67 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAGVP 67 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCCCC
Confidence 357899999999999999999998 678999998 999999976543
No 209
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.79 E-value=7.5e-05 Score=66.47 Aligned_cols=65 Identities=18% Similarity=0.252 Sum_probs=48.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC--eEEEEeCChhHHHHH----HhC-----CCCCcCCHHHHhhcCCEEEEeC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDM-----GVPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l----~~~-----g~~~~~~~~~~~~~adivi~~v 69 (316)
.+||+|||+|.+|..++..|+..|. ++.++|++.++++.. .+. ......+..+.+++||+||++.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIita 81 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITA 81 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEec
Confidence 4799999999999999999998886 899999988764332 221 1222334456689999999964
No 210
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=97.77 E-value=9.6e-05 Score=64.33 Aligned_cols=106 Identities=16% Similarity=0.221 Sum_probs=78.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNG 85 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~~ 85 (316)
+++||+|+|.+|+-+|.++..-|..|+.||+-.. .+...+.|+.. .+.+|++..||+|-+-+|-..+ .+.++.. +
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~-~~~~~a~gvq~-vsl~Eil~~ADFitlH~PLtP~-T~~lin~--~ 221 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITP-MALAEAFGVQL-VSLEEILPKADFITLHVPLTPS-TEKLLND--E 221 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCc-hHHHHhcccee-eeHHHHHhhcCEEEEccCCCcc-hhhccCH--H
Confidence 6899999999999999999999989999986422 23455567665 5789999999999998887655 6666542 2
Q ss_pred cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 86 LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 86 ~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
.++. +.+|..+||++-+..-....+.+.+..
T Consensus 222 tfA~--mKkGVriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 222 TFAK--MKKGVRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred HHHH--hhCCcEEEEecCCceechHHHHHHHhc
Confidence 2222 567889999998875555566665543
No 211
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.77 E-value=6.5e-05 Score=67.82 Aligned_cols=90 Identities=22% Similarity=0.214 Sum_probs=59.0
Q ss_pred CeEEEEcc-chhhHHHHHHHHhC-CCeEE-EEeCChhHHHHHHh-C----CC---CCc-CCHHHHhhcCCEEEEeCCCCh
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSD-M----GV---PTK-ETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~-~----g~---~~~-~~~~~~~~~adivi~~vp~~~ 73 (316)
|||+|+|+ |.+|..+.+.|.++ ++++. +++++.+.-+.+.+ . +. ... .+.++..+++|+||+|+|+..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~ 80 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV 80 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence 58999998 99999999999976 46777 55654422222221 1 11 111 245566568999999999876
Q ss_pred hhHHHHhcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 74 HQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
+ .++.... . ..+..|||.|+..
T Consensus 81 s--~~~~~~~---~-----~~G~~VIDlS~~f 102 (346)
T TIGR01850 81 S--AELAPEL---L-----AAGVKVIDLSADF 102 (346)
T ss_pred H--HHHHHHH---H-----hCCCEEEeCChhh
Confidence 4 5554432 1 1456899999764
No 212
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.76 E-value=6.8e-05 Score=70.45 Aligned_cols=68 Identities=25% Similarity=0.408 Sum_probs=54.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh-CCCCCc----CC---HHHH-hhcCCEEEEeCCCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-MGVPTK----ET---PFEV-AEASDVVITMLPSSS 73 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-~g~~~~----~~---~~~~-~~~adivi~~vp~~~ 73 (316)
|+|.|+|+|.+|..++..|.+.|++|+++++++++++.+.+ .+.... .+ ..++ ++++|.||++++++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~ 77 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDE 77 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChH
Confidence 58999999999999999999999999999999999988876 442211 12 2333 568999999998754
No 213
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.76 E-value=5.5e-05 Score=60.32 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=50.6
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC---CCCc--CCHHHHhhcCCEEEEeCCC
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG---VPTK--ETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g---~~~~--~~~~~~~~~adivi~~vp~ 71 (316)
|||+|||+ |..|+.|..-..+.||+|+.+-||++++....... .... ++..+.+..-|+||.+...
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~ 72 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGA 72 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccC
Confidence 79999985 99999999999999999999999999886542211 1111 2334677889999998643
No 214
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.72 E-value=0.00038 Score=57.83 Aligned_cols=69 Identities=19% Similarity=0.181 Sum_probs=50.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh-HHHHHHhCC-CCCcC-C-HHHHhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN-VMKMFSDMG-VPTKE-T-PFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~-~~~~l~~~g-~~~~~-~-~~~~~~~adivi~~vp~~~ 73 (316)
.++|.|||.|.+|...++.|.+.|++|++++++.. .+..+.+.+ +.... . ..+.+.++|+||.|+.++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~e 82 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPR 82 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHH
Confidence 47899999999999999999999999999987653 334444443 22111 1 1234678999999997764
No 215
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.71 E-value=0.00021 Score=62.29 Aligned_cols=69 Identities=22% Similarity=0.362 Sum_probs=51.7
Q ss_pred CeEEEEccchhhHHHHHHHHhC-CCeEE-EEeCChhH--HHHHHhCCCCC-cCCHHHHhh--cCCEEEEeCCCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNCNV--MKMFSDMGVPT-KETPFEVAE--ASDVVITMLPSSSH 74 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~-g~~V~-~~~r~~~~--~~~l~~~g~~~-~~~~~~~~~--~adivi~~vp~~~~ 74 (316)
+||||||+|++|..++..+.+. +.++. ++++++++ .+...+.|+.. ..+.+++++ +.|+|++|+|+..+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H 77 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAH 77 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHH
Confidence 6899999999999988777754 45655 67888875 34445567654 447788775 57889999999876
No 216
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.68 E-value=0.00013 Score=63.91 Aligned_cols=69 Identities=17% Similarity=0.258 Sum_probs=53.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhC-C----CCCcC---CHHHHhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-G----VPTKE---TPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-g----~~~~~---~~~~~~~~adivi~~vp~~~ 73 (316)
.+++.|||+|.+|.+++..|.+.|. +|++++|++++.+.+.+. + +.... +..+.+.++|+||-|+|...
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~ 202 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADV 202 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCC
Confidence 4679999999999999999999995 799999999998888653 1 11111 22344567899999998653
No 217
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.67 E-value=0.00028 Score=61.33 Aligned_cols=76 Identities=12% Similarity=0.200 Sum_probs=58.5
Q ss_pred CCCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcC
Q 021213 4 FDQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 4 ~~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~ 82 (316)
..++|.|||.|. +|.+++..|.+.|..|+++++.. .++.+.+++||+||.+++.+.- +..
T Consensus 157 ~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p~~-i~~---- 217 (286)
T PRK14175 157 EGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGKPGL-VTK---- 217 (286)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCCCcc-cCH----
Confidence 347899999998 99999999999999999998743 3566778999999999986532 221
Q ss_pred CCCcccCCCCCCCeEEEEcCCCC
Q 021213 83 PNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+...
T Consensus 218 --~~v-----k~gavVIDvGi~~ 233 (286)
T PRK14175 218 --DVV-----KEGAVIIDVGNTP 233 (286)
T ss_pred --HHc-----CCCcEEEEcCCCc
Confidence 122 2467999988643
No 218
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=97.67 E-value=0.00079 Score=60.47 Aligned_cols=105 Identities=15% Similarity=0.190 Sum_probs=71.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC--CeE-EEEeCChhHHHHHHh-CCCCCcCCHHHHhhcCCEEEEeCCC----ChhhH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG--YKM-AVHDVNCNVMKMFSD-MGVPTKETPFEVAEASDVVITMLPS----SSHQV 76 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g--~~V-~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~adivi~~vp~----~~~~~ 76 (316)
..||+|||+ .||...+..+.+.. +++ -++|+++++.+.+.+ .|+...+|.++++++.|++++++|+ ..+ .
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H-~ 80 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQG-S 80 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccH-H
Confidence 468999999 68999999998754 664 468999999888776 5777889999999989999888764 232 1
Q ss_pred HHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhch
Q 021213 77 LDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCI 120 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~ 120 (316)
+-+.. .++ .|+-|+.-.-......+++.+...+.+
T Consensus 81 e~a~~----aL~-----aGkHVL~EKPla~~Ea~el~~~A~~~g 115 (343)
T TIGR01761 81 ALARA----LLA-----RGIHVLQEHPLHPRDIQDLLRLAERQG 115 (343)
T ss_pred HHHHH----HHh-----CCCeEEEcCCCCHHHHHHHHHHHHHcC
Confidence 22211 121 233333333333566777777666543
No 219
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.64 E-value=0.00021 Score=69.33 Aligned_cols=76 Identities=16% Similarity=0.354 Sum_probs=59.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCC---cCCHHHH-----hhcCCEEEEeCCCChhhH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT---KETPFEV-----AEASDVVITMLPSSSHQV 76 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~---~~~~~~~-----~~~adivi~~vp~~~~~~ 76 (316)
+++|-|+|.|++|..+++.|.+.|+++++.|.|+++++.+++.|... ..+..+. +++||.+|++++++.. -
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~-n 478 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPED-T 478 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHH-H
Confidence 36899999999999999999999999999999999999998877432 1122333 3579999999988765 3
Q ss_pred HHHhc
Q 021213 77 LDVYN 81 (316)
Q Consensus 77 ~~v~~ 81 (316)
..++.
T Consensus 479 ~~i~~ 483 (601)
T PRK03659 479 MKIVE 483 (601)
T ss_pred HHHHH
Confidence 34433
No 220
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.64 E-value=0.00017 Score=59.78 Aligned_cols=33 Identities=36% Similarity=0.635 Sum_probs=31.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVN 37 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~ 37 (316)
..+|+|+|+|.||+.++..|++.|. +++++|++
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4789999999999999999999998 69999998
No 221
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=97.60 E-value=0.00031 Score=67.75 Aligned_cols=69 Identities=14% Similarity=0.335 Sum_probs=55.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCC---cCCHHHH-----hhcCCEEEEeCCCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT---KETPFEV-----AEASDVVITMLPSSSH 74 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~---~~~~~~~-----~~~adivi~~vp~~~~ 74 (316)
.+|-|+|+|++|..+++.|.+.|++|+++|.|+++++.+++.|... ..+.++. ++++|.++++++++.+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~ 494 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYE 494 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHH
Confidence 5789999999999999999999999999999999999998877432 1122333 3578999999988654
No 222
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.59 E-value=0.00056 Score=54.44 Aligned_cols=67 Identities=19% Similarity=0.275 Sum_probs=47.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC-CCCc-CCH-HHHhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG-VPTK-ETP-FEVAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g-~~~~-~~~-~~~~~~adivi~~vp~~~ 73 (316)
.++|.|||.|.+|...++.|.+.|++|+++++. ..+.+.+.+ +... ... ++-++++|+||.++.++.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e 82 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHA 82 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHHhccCcEEEecccChhcCCCceEEEECCCCHH
Confidence 378999999999999999999999999999643 334444432 1111 111 123578999999997654
No 223
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.58 E-value=0.00029 Score=63.42 Aligned_cols=69 Identities=20% Similarity=0.313 Sum_probs=48.9
Q ss_pred CeEEEEccchhhHHHHHHHHhC-CCeEEE-EeCChhHHHHHHh-C------------------CCCCcCCHHHHhhcCCE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKA-GYKMAV-HDVNCNVMKMFSD-M------------------GVPTKETPFEVAEASDV 64 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~-g~~V~~-~~r~~~~~~~l~~-~------------------g~~~~~~~~~~~~~adi 64 (316)
+||||+|+|+||..+++.+.+. +.++.. ++++++....+.+ . ++....+.++++.++|+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 5999999999999999988864 466554 5666654443332 1 23334567777788999
Q ss_pred EEEeCCCChh
Q 021213 65 VITMLPSSSH 74 (316)
Q Consensus 65 vi~~vp~~~~ 74 (316)
||.|+|....
T Consensus 82 VIdaT~~~~~ 91 (341)
T PRK04207 82 VVDATPGGVG 91 (341)
T ss_pred EEECCCchhh
Confidence 9999987653
No 224
>PRK10206 putative oxidoreductase; Provisional
Probab=97.58 E-value=0.00063 Score=61.50 Aligned_cols=105 Identities=13% Similarity=0.154 Sum_probs=64.8
Q ss_pred CeEEEEccchhhH-HHHHHHHh--CCCeEE-EEeCChhHHHHHHhCC-CCCcCCHHHHhh--cCCEEEEeCCCChhhHHH
Q 021213 6 QSVGFIGLGNMGF-RMASNLMK--AGYKMA-VHDVNCNVMKMFSDMG-VPTKETPFEVAE--ASDVVITMLPSSSHQVLD 78 (316)
Q Consensus 6 ~~IgiiG~G~mG~-~la~~l~~--~g~~V~-~~~r~~~~~~~l~~~g-~~~~~~~~~~~~--~adivi~~vp~~~~~~~~ 78 (316)
.||||||+|.++. ..+..+.. .+.+|. ++|+++++.+...+.+ +...+|.+++++ +.|+|++|+|+..+ .+-
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H-~~~ 80 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSH-FEY 80 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHH-HHH
Confidence 5899999999775 33454533 246664 6899876653333444 567789999986 57999999999876 444
Q ss_pred HhcCCCCcccCCCCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 79 VYNGPNGLLQGGNSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
+... ++. +.++++.- -+......+++.+...+.
T Consensus 81 ~~~a----l~a----GkhVl~EKPla~~~~ea~~l~~~a~~~ 114 (344)
T PRK10206 81 AKRA----LEA----GKNVLVEKPFTPTLAEAKELFALAKSK 114 (344)
T ss_pred HHHH----HHc----CCcEEEecCCcCCHHHHHHHHHHHHHh
Confidence 4332 211 22344442 223355566666655543
No 225
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.55 E-value=0.00033 Score=65.13 Aligned_cols=69 Identities=20% Similarity=0.278 Sum_probs=49.4
Q ss_pred CCCeEEEEccchhhHHHHHHHHhC--------C--Ce-EEEEeCChhHHHHHHhCCCCCcCCHHHHhh--cCCEEEEeCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKA--------G--YK-MAVHDVNCNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLP 70 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~--------g--~~-V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~adivi~~vp 70 (316)
++.+|||+|+|.+|..+++.|.++ | .+ +.+++|++++...+...+...+++.+++++ +.|+|+.|++
T Consensus 2 ~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg 81 (426)
T PRK06349 2 KPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMG 81 (426)
T ss_pred CeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCC
Confidence 357999999999999999887654 2 34 446788877654322233456778889886 4699999986
Q ss_pred CC
Q 021213 71 SS 72 (316)
Q Consensus 71 ~~ 72 (316)
..
T Consensus 82 ~~ 83 (426)
T PRK06349 82 GI 83 (426)
T ss_pred Cc
Confidence 53
No 226
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.53 E-value=0.00088 Score=56.27 Aligned_cols=71 Identities=20% Similarity=0.287 Sum_probs=50.1
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh----------hHHHHHHhCC-CCCcC-----CHHHHh-hcCCE
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC----------NVMKMFSDMG-VPTKE-----TPFEVA-EASDV 64 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~----------~~~~~l~~~g-~~~~~-----~~~~~~-~~adi 64 (316)
++.++|.|.|+|++|..+++.|.+.|. .|.+.|.+. +.++...+.+ +.... +.++++ .+||+
T Consensus 21 l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DV 100 (217)
T cd05211 21 LEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVDI 100 (217)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccccE
Confidence 345899999999999999999999987 566778887 6665554433 22111 112322 37999
Q ss_pred EEEeCCCCh
Q 021213 65 VITMLPSSS 73 (316)
Q Consensus 65 vi~~vp~~~ 73 (316)
+|.|.+.+.
T Consensus 101 lipaA~~~~ 109 (217)
T cd05211 101 FAPCALGNV 109 (217)
T ss_pred EeeccccCc
Confidence 999987664
No 227
>PRK15076 alpha-galactosidase; Provisional
Probab=97.52 E-value=0.00012 Score=67.89 Aligned_cols=67 Identities=18% Similarity=0.339 Sum_probs=48.2
Q ss_pred CeEEEEccchhhHHHHH--HHH----hCCCeEEEEeCChhHHHHHH--------hCC----CCCcCCHHHHhhcCCEEEE
Q 021213 6 QSVGFIGLGNMGFRMAS--NLM----KAGYKMAVHDVNCNVMKMFS--------DMG----VPTKETPFEVAEASDVVIT 67 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~--~l~----~~g~~V~~~~r~~~~~~~l~--------~~g----~~~~~~~~~~~~~adivi~ 67 (316)
+||+|||+|.||...+- .++ -.+++|+++|+++++.+... ..+ +..+++..+++++||+||.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 69999999999965544 443 23579999999998765321 112 3446677899999999999
Q ss_pred eCCCC
Q 021213 68 MLPSS 72 (316)
Q Consensus 68 ~vp~~ 72 (316)
+....
T Consensus 82 ti~vg 86 (431)
T PRK15076 82 AIQVG 86 (431)
T ss_pred eeeeC
Confidence 86543
No 228
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.51 E-value=0.00029 Score=62.60 Aligned_cols=64 Identities=20% Similarity=0.268 Sum_probs=47.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHHHHH----HhC-------CCCCcCCHHHHhhcCCEEEEeC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMF----SDM-------GVPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l----~~~-------g~~~~~~~~~~~~~adivi~~v 69 (316)
.+||+|||+|.+|..+|..|+..| .++.++|++.++++.. ... .+..+.+.++ +++||+||++.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvita 79 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTA 79 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECC
Confidence 479999999999999999998887 4799999987654322 221 1222345554 78999999964
No 229
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.47 E-value=0.00032 Score=57.17 Aligned_cols=62 Identities=18% Similarity=0.211 Sum_probs=49.3
Q ss_pred EEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC-----C--cCCHHHHhhcCCEEEEeCCC
Q 021213 8 VGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----T--KETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 8 IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~-----~--~~~~~~~~~~adivi~~vp~ 71 (316)
|.|+|+ |.+|..+++.|.+.||+|++..|++++.+. ..+++ . ..+..++++++|.||.+++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 679995 999999999999999999999999998876 33321 1 12345677899999998864
No 230
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.47 E-value=0.00066 Score=50.95 Aligned_cols=67 Identities=24% Similarity=0.353 Sum_probs=52.1
Q ss_pred EEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCc----CCHHH----HhhcCCEEEEeCCCChh
Q 021213 8 VGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK----ETPFE----VAEASDVVITMLPSSSH 74 (316)
Q Consensus 8 IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~----~~~~~----~~~~adivi~~vp~~~~ 74 (316)
|-|+|+|.+|..+++.|.+.+.+|++.++++++++.+.+.|.... +++.. -+++++.++++++++..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~ 75 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEE 75 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHH
Confidence 568999999999999999977799999999999999998874321 12221 13578999999987653
No 231
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.47 E-value=0.00031 Score=62.16 Aligned_cols=63 Identities=24% Similarity=0.287 Sum_probs=48.0
Q ss_pred EEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHHHHHHh----C----C-CCC--cCCHHHHhhcCCEEEEeCCC
Q 021213 8 VGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSD----M----G-VPT--KETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 8 IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~----~----g-~~~--~~~~~~~~~~adivi~~vp~ 71 (316)
|+|||+|.+|+.++..|+..| ++++++|+++++++.... . . .+. ..+ .+.+++||+||++...
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~ 76 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGA 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCC
Confidence 689999999999999999988 789999999887654432 1 1 111 233 4678999999998654
No 232
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.47 E-value=0.063 Score=47.00 Aligned_cols=214 Identities=14% Similarity=0.165 Sum_probs=122.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHh---CC--------------------C-CCcCCHHHHhh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSD---MG--------------------V-PTKETPFEVAE 60 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~---~g--------------------~-~~~~~~~~~~~ 60 (316)
.++-++|+|....-+|.-+..+| ..+-+++|...+-+++.+ .+ + ....+++++..
T Consensus 5 ~~vLllGtGpvaIQlAv~l~~h~d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~a~~~~ 84 (431)
T COG4408 5 LPVLLLGTGPVAIQLAVDLSAHGDARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDLAQAVG 84 (431)
T ss_pred cceeEeecCcHHHHHHHHHHhccCceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhHHHhhc
Confidence 57899999999999999999888 688899986555444432 11 1 12346667777
Q ss_pred cCCEEEEeCCCChhhHHHHhcCCCC-cccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhch-hhhccCCCCCccEEeccC
Q 021213 61 ASDVVITMLPSSSHQVLDVYNGPNG-LLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCI-LKEKKDSWENPVMLDAPV 138 (316)
Q Consensus 61 ~adivi~~vp~~~~~~~~v~~~~~~-~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~-~~~~~g~~~~~~~~~~p~ 138 (316)
+-+.+|+|||.+. -.++++++.. .++ ..+..++|..+-++-.....+.....+.. +.-...|+....+++..-
T Consensus 85 dwqtlilav~aDa--Y~dvlqqi~~e~L~---~vk~viLiSptfGsn~lv~~~mnk~~~daeViS~SsY~~dTk~id~~~ 159 (431)
T COG4408 85 DWQTLILAVPADA--YYDVLQQIPWEALP---QVKSVILISPTFGSNLLVQNLMNKAGRDAEVISLSSYYADTKYIDAEQ 159 (431)
T ss_pred hhheEEEEeecHH--HHHHHhcCCHhHhc---cccEEEEecccccccHHHHHHHhhhCCCceEEEeehhcccceeecccC
Confidence 8899999999887 5889988743 332 12333333333333323344333333210 000111111122333211
Q ss_pred CCCh-HhhhcCceEEEec---CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHH--------HHHH--------------
Q 021213 139 SGGV-LAAEAGTLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAK--------ICNN-------------- 192 (316)
Q Consensus 139 ~~~~-~~~~~g~~~~~~~---~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k--------~~~n-------------- 192 (316)
..+. ..+.+. .++.| ++....+++..++...|.++..+.+.-.++... +..|
T Consensus 160 p~~alTkavKk--riYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~aif~~~~~p 237 (431)
T COG4408 160 PNRALTKAVKK--RIYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQAIFYPEQRP 237 (431)
T ss_pred cchHHHHHHhH--heeeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcccceeecCcchhhhhHHHHHhCCcCCC
Confidence 1111 111122 23333 356677889999999997766655543333321 0001
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 021213 193 --------------LTMAVSMLGVSEALTLGQSLGISASTLTKILNSS 226 (316)
Q Consensus 193 --------------~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~ 226 (316)
.+..-+...+.|.+.+..+.|+.+-.+++.++..
T Consensus 238 ~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iNLLrFl~dd 285 (431)
T COG4408 238 QYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEINLLRFLNDD 285 (431)
T ss_pred ceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHhccC
Confidence 2222345678899999999999888877777654
No 233
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.46 E-value=0.00091 Score=56.61 Aligned_cols=103 Identities=18% Similarity=0.253 Sum_probs=64.8
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCCCeEE-EEeC----------ChhHHHHHHhC-C-------CCCcCCHHHHh-hcC
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAGYKMA-VHDV----------NCNVMKMFSDM-G-------VPTKETPFEVA-EAS 62 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g~~V~-~~~r----------~~~~~~~l~~~-g-------~~~~~~~~~~~-~~a 62 (316)
++.++|+|.|+|++|..+++.|.+.|..|+ +.|. +.+.+..+.+. | .... +++++. .+|
T Consensus 29 l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~~ 107 (227)
T cd01076 29 LAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELDC 107 (227)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeecc
Confidence 456899999999999999999999999988 5566 55555544432 2 1111 223322 379
Q ss_pred CEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 63 DVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 63 divi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
|+++-|.+.+.. ..+.+..+ +-++|+..++... + ....+.+.++
T Consensus 108 Dvlip~a~~~~i-~~~~~~~l----------~a~~I~egAN~~~-t-~~a~~~L~~r 151 (227)
T cd01076 108 DILIPAALENQI-TADNADRI----------KAKIIVEAANGPT-T-PEADEILHER 151 (227)
T ss_pred cEEEecCccCcc-CHHHHhhc----------eeeEEEeCCCCCC-C-HHHHHHHHHC
Confidence 999999876643 33444332 2236666665543 3 4445556554
No 234
>CHL00194 ycf39 Ycf39; Provisional
Probab=97.45 E-value=0.00045 Score=61.70 Aligned_cols=65 Identities=18% Similarity=0.256 Sum_probs=51.0
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCC-------cCCHHHHhhcCCEEEEeCC
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-------KETPFEVAEASDVVITMLP 70 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~adivi~~vp 70 (316)
|||.|.| .|.+|+.+++.|.+.||+|++..|++++...+...+++. ..+..++++++|+||-+..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 5899998 599999999999999999999999987665555444322 1234567889999998754
No 235
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.44 E-value=0.00079 Score=58.50 Aligned_cols=75 Identities=17% Similarity=0.225 Sum_probs=58.4
Q ss_pred CCeEEEEccchh-hHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGNM-GFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~m-G~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.++|.|||.|.. |.+++..|.+.|..|++++.. +.++.+.+++||+||++++.+.- +..
T Consensus 158 Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIVV~avG~~~~-i~~----- 217 (285)
T PRK14189 158 GAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------------TRDLAAHTRQADIVVAAVGKRNV-LTA----- 217 (285)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------------CCCHHHHhhhCCEEEEcCCCcCc-cCH-----
Confidence 478999999999 999999999999999998653 24567888999999999986532 222
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 218 -~~i-----k~gavVIDVGin~ 233 (285)
T PRK14189 218 -DMV-----KPGATVIDVGMNR 233 (285)
T ss_pred -HHc-----CCCCEEEEccccc
Confidence 222 3667999988654
No 236
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.43 E-value=0.0017 Score=60.86 Aligned_cols=119 Identities=18% Similarity=0.219 Sum_probs=69.9
Q ss_pred CCCCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh----HHHHHHhCCCCCc--CCHHHHhhc-CCEEEEe--CCC
Q 021213 1 MLFFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN----VMKMFSDMGVPTK--ETPFEVAEA-SDVVITM--LPS 71 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~----~~~~l~~~g~~~~--~~~~~~~~~-adivi~~--vp~ 71 (316)
|.+..++|.|+|.|.+|.+.|+.|++.|++|+++|++.. ..+.+.+.|+... ....+.... +|+||.. +|.
T Consensus 1 ~~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~ 80 (447)
T PRK02472 1 TEYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPY 80 (447)
T ss_pred CCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCC
Confidence 555567899999999999999999999999999997642 2345666676543 234454444 8988884 343
Q ss_pred ChhhHHHHhcCCCCcccC-----CCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 72 SSHQVLDVYNGPNGLLQG-----GNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~-----~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
+...++.....-.+++.. .......+-|--|.++..++.-+...+...
T Consensus 81 ~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~ 133 (447)
T PRK02472 81 TNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAG 133 (447)
T ss_pred CCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHC
Confidence 322133332221122110 001122334444445566666666666543
No 237
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.42 E-value=0.00038 Score=63.98 Aligned_cols=65 Identities=26% Similarity=0.386 Sum_probs=48.1
Q ss_pred EEEEccchhhHHHHHHHHhCC-C-eEEEEeCChhHHHHHHhC--C-------CCCc--CCHHHHhhcCCEEEEeCCCC
Q 021213 8 VGFIGLGNMGFRMASNLMKAG-Y-KMAVHDVNCNVMKMFSDM--G-------VPTK--ETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 8 IgiiG~G~mG~~la~~l~~~g-~-~V~~~~r~~~~~~~l~~~--g-------~~~~--~~~~~~~~~adivi~~vp~~ 72 (316)
|.|+|+|.+|+.+++.|++.+ + +|++.||+.++++.+.+. + +... .++.++++++|+||-|+|..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence 789999999999999999987 4 899999999998888652 2 1211 12456788999999999764
No 238
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.41 E-value=0.00065 Score=66.20 Aligned_cols=69 Identities=20% Similarity=0.361 Sum_probs=56.2
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCc---CCHHHHh-----hcCCEEEEeCCCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTK---ETPFEVA-----EASDVVITMLPSSSH 74 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~---~~~~~~~-----~~adivi~~vp~~~~ 74 (316)
.+|-|+|+|++|..+++.|.+.|+++++.|.|+++++.+++.|.... .+..+.+ +++|.+|++++++..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~ 477 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQT 477 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHH
Confidence 57999999999999999999999999999999999999988774321 1223333 479999999987654
No 239
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.39 E-value=0.00045 Score=64.25 Aligned_cols=115 Identities=19% Similarity=0.094 Sum_probs=66.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCC--hhhHHHHhcC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSS--SHQVLDVYNG 82 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~--~~~~~~v~~~ 82 (316)
.++|.|||+|.+|.++|+.|.+.|++|+++|++++.........-....+.....+++|++|.+.+.+ ...++.....
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~ 82 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIAS 82 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHC
Confidence 46899999999999999999999999999998776432211000011123344457799999875432 1113333321
Q ss_pred CCCcccC-----CC--C-CCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 83 PNGLLQG-----GN--S-VRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 83 ~~~~~~~-----~~--~-~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
-.++... .. . ....+-|--|.++..++.-+...+...
T Consensus 83 g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~ 127 (418)
T PRK00683 83 HIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRL 127 (418)
T ss_pred CCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHc
Confidence 1111110 00 0 112344445555666777777777654
No 240
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.39 E-value=0.0017 Score=61.40 Aligned_cols=68 Identities=21% Similarity=0.203 Sum_probs=51.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHH-HhCCCCCcC--CHHHHhhcCCEEEEe--CCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF-SDMGVPTKE--TPFEVAEASDVVITM--LPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l-~~~g~~~~~--~~~~~~~~adivi~~--vp~~ 72 (316)
.++|.|+|+|..|.++++.|.+.|++|+++|++......+ .+.|+.... ...+.+.++|+||.. +|..
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~ 87 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPD 87 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCC
Confidence 4689999999999999999999999999999876655443 445765432 223445688998884 5543
No 241
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.38 E-value=0.0014 Score=61.60 Aligned_cols=64 Identities=22% Similarity=0.213 Sum_probs=51.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCC-cCC--------------------------HHHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-KET--------------------------PFEV 58 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-~~~--------------------------~~~~ 58 (316)
.|+.|+|+|.+|...+..+...|..|+++|+++++.+..++.|... ..+ ..+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~ 244 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQ 244 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999888777766443 001 2334
Q ss_pred hhcCCEEEEeC
Q 021213 59 AEASDVVITML 69 (316)
Q Consensus 59 ~~~adivi~~v 69 (316)
++++|+||.|+
T Consensus 245 ~~~~DIVI~Ta 255 (511)
T TIGR00561 245 AKEVDIIITTA 255 (511)
T ss_pred hCCCCEEEECc
Confidence 57899999987
No 242
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.38 E-value=0.0025 Score=60.45 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=53.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcC--CHHHHhhcCCEEEEe--CCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE--TPFEVAEASDVVITM--LPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~--~~~~~~~~adivi~~--vp~~ 72 (316)
.++|.|+|+|..|.+.++.|.+.|++|+++|+++...+.+.+.|+.... ...+.++++|+||.+ +|.+
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~ 83 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPT 83 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCC
Confidence 4689999999999999999999999999999887766666666765432 234556789999885 5543
No 243
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.37 E-value=0.00032 Score=62.35 Aligned_cols=64 Identities=23% Similarity=0.272 Sum_probs=46.2
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCC--eEEEEeCCh--hHHHH----HHh----CC----CCCcCCHHHHhhcCCEEEEe
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGY--KMAVHDVNC--NVMKM----FSD----MG----VPTKETPFEVAEASDVVITM 68 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~--~V~~~~r~~--~~~~~----l~~----~g----~~~~~~~~~~~~~adivi~~ 68 (316)
|||+|+|+ |.+|..++..|+..|+ +|+++||++ ++++. +.+ .+ +...++ .+.+++||+||+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEe
Confidence 69999998 9999999999999986 499999954 33211 111 12 112334 4458999999998
Q ss_pred CC
Q 021213 69 LP 70 (316)
Q Consensus 69 vp 70 (316)
..
T Consensus 80 ag 81 (309)
T cd05294 80 AG 81 (309)
T ss_pred cC
Confidence 75
No 244
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=97.36 E-value=0.00036 Score=56.29 Aligned_cols=94 Identities=17% Similarity=0.161 Sum_probs=61.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcC--------------------------CHHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE--------------------------TPFEV 58 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~--------------------------~~~~~ 58 (316)
+.+|.|+|.|+.|..-+..+...|++|+.+|.++++.+.+...+..... ...+.
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 99 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAEF 99 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHHH
Confidence 4689999999999999999999999999999999888877765422111 23445
Q ss_pred hhcCCEEEEe--CCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCC
Q 021213 59 AEASDVVITM--LPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 59 ~~~adivi~~--vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~ 104 (316)
++.+|+||.+ .|.... ..++. ++.++. +.++.+|+|.|.-
T Consensus 100 i~~~d~vI~~~~~~~~~~--P~lvt--~~~~~~--m~~gsvIvDis~D 141 (168)
T PF01262_consen 100 IAPADIVIGNGLYWGKRA--PRLVT--EEMVKS--MKPGSVIVDISCD 141 (168)
T ss_dssp HHH-SEEEEHHHBTTSS-----SBE--HHHHHT--SSTTEEEEETTGG
T ss_pred HhhCcEEeeecccCCCCC--CEEEE--hHHhhc--cCCCceEEEEEec
Confidence 6789999985 343321 11111 111221 3467799998753
No 245
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.36 E-value=0.0016 Score=55.08 Aligned_cols=69 Identities=22% Similarity=0.210 Sum_probs=50.3
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCC---eEEEEeCC----hhHH-------HHHHh-CCC-CCcCCHHHHhhcCCEEEE
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGY---KMAVHDVN----CNVM-------KMFSD-MGV-PTKETPFEVAEASDVVIT 67 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~---~V~~~~r~----~~~~-------~~l~~-~g~-~~~~~~~~~~~~adivi~ 67 (316)
..++|.|+|+|.+|.+++..|.+.|. +|+++||+ .++. ..+.+ .+. ....+..+.++++|++|-
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvlIg 103 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIG 103 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEEEe
Confidence 34789999999999999999999995 69999998 3432 22322 211 111366678889999999
Q ss_pred eCCCC
Q 021213 68 MLPSS 72 (316)
Q Consensus 68 ~vp~~ 72 (316)
++|..
T Consensus 104 aT~~G 108 (226)
T cd05311 104 VSRPG 108 (226)
T ss_pred CCCCC
Confidence 99743
No 246
>PLN02602 lactate dehydrogenase
Probab=97.35 E-value=0.00058 Score=61.54 Aligned_cols=63 Identities=22% Similarity=0.356 Sum_probs=46.1
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC--eEEEEeCChhHHHHH----HhC----C-CCCc--CCHHHHhhcCCEEEEeC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKMF----SDM----G-VPTK--ETPFEVAEASDVVITML 69 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l----~~~----g-~~~~--~~~~~~~~~adivi~~v 69 (316)
+||+|||+|.+|..+|..|+..+. ++.++|+++++++.. ... + .... .+. +.+++||+||++-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitA 113 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTA 113 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECC
Confidence 599999999999999999988774 799999988754322 221 1 2222 244 4478999999974
No 247
>PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1.1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B ....
Probab=97.35 E-value=0.00029 Score=53.82 Aligned_cols=83 Identities=17% Similarity=0.265 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHcCCC--HHHHHHHHhhccCCccccccCCCCCCcccCCCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q 021213 197 VSMLGVSEALTLGQSLGIS--ASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKE 274 (316)
Q Consensus 197 ~~~~~~~Ea~~l~~~~G~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~ 274 (316)
.....+.|+..++++.|++ ++.+.+.+......... ...+...++..|++.+-++..| .+++.+++
T Consensus 39 ~~~~l~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~~-~~~SM~~D~~~gr~tEid~i~G-----------~vv~~a~~ 106 (125)
T PF08546_consen 39 LIRALMREVIAVARALGIPLDPDDLEEAIERLIRSTPD-NRSSMLQDIEAGRPTEIDYING-----------YVVRLAKK 106 (125)
T ss_dssp HHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHCTTT-T--HHHHHHHTTB--SHHHTHH-----------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCC-ccccHHHHHHHcccccHHHHHH-----------HHHHHHHH
Confidence 3456788999999999964 44344443322111000 0111233444555555444433 89999999
Q ss_pred cCCCCcHHHHHHHHHHH
Q 021213 275 VGVDCPLTSQAQDIYAK 291 (316)
Q Consensus 275 ~g~~~p~~~~~~~~~~~ 291 (316)
+|+++|.++.++++++.
T Consensus 107 ~gv~~P~~~~i~~lvk~ 123 (125)
T PF08546_consen 107 HGVPTPVNETIYALVKA 123 (125)
T ss_dssp TT---HHHHHHHHHHHH
T ss_pred HCCCCcHHHHHHHHHHH
Confidence 99999999999998875
No 248
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=97.31 E-value=0.0022 Score=50.96 Aligned_cols=76 Identities=16% Similarity=0.247 Sum_probs=52.0
Q ss_pred CCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||-+. +|.+++..|.+.|..|++++... .++++.+++||+||.+++.+.- ++.
T Consensus 36 Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T--------------~~l~~~~~~ADIVVsa~G~~~~-i~~----- 95 (160)
T PF02882_consen 36 GKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT--------------KNLQEITRRADIVVSAVGKPNL-IKA----- 95 (160)
T ss_dssp T-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS--------------SSHHHHHTTSSEEEE-SSSTT--B-G-----
T ss_pred CCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC--------------CcccceeeeccEEeeeeccccc-ccc-----
Confidence 47899999985 99999999999999999998753 4567778899999999976542 221
Q ss_pred CCcccCCCCCCCeEEEEcCCCCH
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDP 106 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~ 106 (316)
..+ .++.++||++....
T Consensus 96 -~~i-----k~gavVIDvG~~~~ 112 (160)
T PF02882_consen 96 -DWI-----KPGAVVIDVGINYV 112 (160)
T ss_dssp -GGS------TTEEEEE--CEEE
T ss_pred -ccc-----cCCcEEEecCCccc
Confidence 123 36789999987654
No 249
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=97.31 E-value=0.00054 Score=62.50 Aligned_cols=91 Identities=14% Similarity=0.177 Sum_probs=60.1
Q ss_pred CCCeEEEEcc-chhhHHHHHHHHhC-CCeEEEEeCChhHHHHHHhCC-------CCCcCCHH-HHhhcCCEEEEeCCCCh
Q 021213 4 FDQSVGFIGL-GNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMG-------VPTKETPF-EVAEASDVVITMLPSSS 73 (316)
Q Consensus 4 ~~~~IgiiG~-G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~~g-------~~~~~~~~-~~~~~adivi~~vp~~~ 73 (316)
+++||+|+|+ |..|..+.+.|.++ .++|+.+.++.+.-+.+.+.. .....+.+ +.++++|+||+|+|...
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~~ 116 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHGT 116 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHHH
Confidence 3579999987 99999999999988 678998877544333322211 11111112 22478999999999865
Q ss_pred hhHHHHhcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 74 HQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+++..+ + .+..|||.|+..
T Consensus 117 --s~~i~~~~----~-----~g~~VIDlSs~f 137 (381)
T PLN02968 117 --TQEIIKAL----P-----KDLKIVDLSADF 137 (381)
T ss_pred --HHHHHHHH----h-----CCCEEEEcCchh
Confidence 45555432 1 345899999765
No 250
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.30 E-value=0.0011 Score=55.04 Aligned_cols=34 Identities=29% Similarity=0.385 Sum_probs=31.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~ 38 (316)
..+|.|||+|.+|+.++..|++.|. +++++|.+.
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 4689999999999999999999995 899999873
No 251
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.27 E-value=0.00067 Score=60.13 Aligned_cols=63 Identities=17% Similarity=0.346 Sum_probs=46.5
Q ss_pred eEEEEccchhhHHHHHHHHhCCC--eEEEEeCChhHHH----HHHhC-------CCCCcCCHHHHhhcCCEEEEeC
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMK----MFSDM-------GVPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~----~l~~~-------g~~~~~~~~~~~~~adivi~~v 69 (316)
||+|||+|.+|..+|..|+..+. ++.++|+++++++ .+... ..+...+..+.+++||+||++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvita 76 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITA 76 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECC
Confidence 79999999999999999998874 7999999876542 23321 1122233457789999999964
No 252
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.27 E-value=0.00025 Score=53.42 Aligned_cols=71 Identities=23% Similarity=0.478 Sum_probs=52.0
Q ss_pred CeEEEEc----cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhc
Q 021213 6 QSVGFIG----LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 6 ~~IgiiG----~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~ 81 (316)
++|+||| -+.+|.-+.+.|.+.|++|+..+.....+ .|.....++.|.-...|++++++|... +.++++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----~G~~~y~sl~e~p~~iDlavv~~~~~~--~~~~v~ 73 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCVPPDK--VPEIVD 73 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----TTEE-BSSGGGCSST-SEEEE-S-HHH--HHHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----CcEEeeccccCCCCCCCEEEEEcCHHH--HHHHHH
Confidence 4799999 79999999999999999999998765433 366677888874578999999998654 566665
Q ss_pred CC
Q 021213 82 GP 83 (316)
Q Consensus 82 ~~ 83 (316)
+.
T Consensus 74 ~~ 75 (116)
T PF13380_consen 74 EA 75 (116)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 253
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.25 E-value=0.0017 Score=58.59 Aligned_cols=69 Identities=22% Similarity=0.401 Sum_probs=46.2
Q ss_pred CCCeEEEEccchhhHHHHHHHHhC----------CCeEE-EEeCC----------hhHHHHHHhC-CC-C------CcCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKA----------GYKMA-VHDVN----------CNVMKMFSDM-GV-P------TKET 54 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~----------g~~V~-~~~r~----------~~~~~~l~~~-g~-~------~~~~ 54 (316)
|..+|+|+|+|.||..+++.|.+. +.+|. ++|++ .+++..+.+. +. . .+.+
T Consensus 1 m~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (341)
T PRK06270 1 MEMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEIS 80 (341)
T ss_pred CeEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCC
Confidence 356999999999999999998765 34543 55753 3333333332 21 1 1247
Q ss_pred HHHHhh--cCCEEEEeCCCC
Q 021213 55 PFEVAE--ASDVVITMLPSS 72 (316)
Q Consensus 55 ~~~~~~--~adivi~~vp~~ 72 (316)
..++++ +.|+|+.|+|+.
T Consensus 81 ~~ell~~~~~DvVvd~T~s~ 100 (341)
T PRK06270 81 GLEVIRSVDADVVVEATPTN 100 (341)
T ss_pred HHHHhhccCCCEEEECCcCc
Confidence 788774 689999999864
No 254
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.25 E-value=0.0015 Score=52.95 Aligned_cols=32 Identities=28% Similarity=0.554 Sum_probs=29.5
Q ss_pred eEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 38 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~ 38 (316)
||.|||+|.+|+.++..|++.|. +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 68999999999999999999997 599999875
No 255
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.24 E-value=0.0011 Score=62.16 Aligned_cols=69 Identities=26% Similarity=0.366 Sum_probs=51.2
Q ss_pred CCCCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh-hHH----HHHHhCCCCC--cCCHHHHhhcCCEEEEeC
Q 021213 1 MLFFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC-NVM----KMFSDMGVPT--KETPFEVAEASDVVITML 69 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~-~~~----~~l~~~g~~~--~~~~~~~~~~adivi~~v 69 (316)
|.+..++|.|+|.|.+|.++|..|++.|++|+++|++. +.+ +.+.+.|+.. .+...+....+|+||.+.
T Consensus 1 ~~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~ 76 (450)
T PRK14106 1 MELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSP 76 (450)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECC
Confidence 44556899999999999999999999999999999975 223 3344445442 223345556899999975
No 256
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.23 E-value=0.0044 Score=58.36 Aligned_cols=64 Identities=22% Similarity=0.390 Sum_probs=48.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh-----HHHHHHhCCCCCc--CCHHHHhhcCCEEEEe
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN-----VMKMFSDMGVPTK--ETPFEVAEASDVVITM 68 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~-----~~~~l~~~g~~~~--~~~~~~~~~adivi~~ 68 (316)
.++|+|+|+|.-|.++|+.|.+.|++|+++|+++. ..+.+.+.|+... ....+.+.++|+||.+
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S 84 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT 84 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC
Confidence 36899999999999999999999999999998653 2244666676543 2223445789999885
No 257
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=97.23 E-value=0.018 Score=49.03 Aligned_cols=114 Identities=16% Similarity=0.120 Sum_probs=75.3
Q ss_pred CCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCC
Q 021213 48 GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127 (316)
Q Consensus 48 g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~ 127 (316)
|+..++|..|+++++|++|+-+|.... ...+++.+-+.+ +.+.+|.++.|++|.....+-+.+.+.. .|
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~-t~~Iikki~~~i-----pEgAII~~tCTIpt~~ly~~le~l~R~D----vg- 196 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGM-QPDIIEKFADDI-----KEGAIVTHACTIPTTKFAKIFKDLGRDD----LN- 196 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCC-chHHHHHHHhhC-----CCCCEEeccccCCHHHHHHHHHHhCccc----CC-
Confidence 477788889999999999999998764 355555544444 3677999999999876666555555432 22
Q ss_pred CCCccEEeccCCCChHhhhcCceEEEec-CCHHHHHHHHHHHHhcCCCeEeeC
Q 021213 128 WENPVMLDAPVSGGVLAAEAGTLTFMVG-GSEDAYQAAKPLFLSMGKNTIYCG 179 (316)
Q Consensus 128 ~~~~~~~~~p~~~~~~~~~~g~~~~~~~-~~~~~~~~v~~ll~~~g~~v~~~g 179 (316)
...|..+.+-+.+ |+...--+ .++|..+++.++.++.++.++.+.
T Consensus 197 --IsS~HPaaVPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~P 242 (342)
T PRK00961 197 --VTSYHPGAVPEMK-----GQVYIAEGYADEEAVEKLYEIGKKARGNAFKMP 242 (342)
T ss_pred --eeccCCCCCCCCC-----CceecccccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 1233333333333 33111111 278999999999999999887653
No 258
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=97.22 E-value=0.0014 Score=58.98 Aligned_cols=35 Identities=29% Similarity=0.497 Sum_probs=31.7
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 38 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~ 38 (316)
...+|.|||+|.+|+.++..|+++|+ +++++|++.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 35789999999999999999999997 899999874
No 259
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=97.22 E-value=0.0041 Score=57.53 Aligned_cols=117 Identities=19% Similarity=0.152 Sum_probs=69.7
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhH----HHHHHhCCCCCcC--CHHHHhhcCCEEEEe--CCCChhh
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV----MKMFSDMGVPTKE--TPFEVAEASDVVITM--LPSSSHQ 75 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~----~~~l~~~g~~~~~--~~~~~~~~adivi~~--vp~~~~~ 75 (316)
..|||.|+|+|.-|.+.++.|.+.|++|+++|.++.. ...+...++.... -..+...++|+||.. +|.....
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p~ 85 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHPL 85 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCHH
Confidence 3689999999999999999999999999999966554 2223334443322 122567789999984 5543221
Q ss_pred HHHHhcCCCCccc-----CCCC-CCCeEEEEcCCCCHHHHHHHHHHHhhch
Q 021213 76 VLDVYNGPNGLLQ-----GGNS-VRPQLLIDSSTIDPQTSRNISAAVSNCI 120 (316)
Q Consensus 76 ~~~v~~~~~~~~~-----~~~~-~~~~~vi~~st~~~~~~~~l~~~~~~~~ 120 (316)
++.....-.+++. .... ..+-+-|.-|+++..++.-+...+...+
T Consensus 86 v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G 136 (448)
T COG0771 86 VEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAG 136 (448)
T ss_pred HHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcC
Confidence 4433222112220 0000 1233344445555667777777776654
No 260
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=97.22 E-value=0.0042 Score=58.55 Aligned_cols=115 Identities=17% Similarity=0.300 Sum_probs=69.5
Q ss_pred CeEEEEccchhhHH-HHHHHHhCCCeEEEEeCChh-HHHHHHhCCCCCc-CCHHHHhhcCCEEEEe--CCCChhhHHHHh
Q 021213 6 QSVGFIGLGNMGFR-MASNLMKAGYKMAVHDVNCN-VMKMFSDMGVPTK-ETPFEVAEASDVVITM--LPSSSHQVLDVY 80 (316)
Q Consensus 6 ~~IgiiG~G~mG~~-la~~l~~~g~~V~~~~r~~~-~~~~l~~~g~~~~-~~~~~~~~~adivi~~--vp~~~~~~~~v~ 80 (316)
++|.|+|+|..|.+ +|+.|.+.|++|+++|.++. ..+.+.+.|+... ....+.++++|+||.. +|.....++...
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~a~ 87 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELVAAR 87 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHH
Confidence 68999999999999 89999999999999997543 3445666676543 2223455689999884 554422133332
Q ss_pred cCCCCcccC------CCCCCCeEEEEcCCCCHHHHHHHHHHHhhch
Q 021213 81 NGPNGLLQG------GNSVRPQLLIDSSTIDPQTSRNISAAVSNCI 120 (316)
Q Consensus 81 ~~~~~~~~~------~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~ 120 (316)
..-.+++.. .......+-|--|.++..++.-+...+...+
T Consensus 88 ~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 88 ELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred HCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 211111110 0001223444445555667677777776543
No 261
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.21 E-value=0.0017 Score=56.76 Aligned_cols=75 Identities=12% Similarity=0.225 Sum_probs=55.6
Q ss_pred CCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||.|. .|.+++..|.+.|..|++++|.. .++.+.++++|+||.|++.+.. +..
T Consensus 159 Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t--------------~~L~~~~~~aDIvI~AtG~~~~-v~~----- 218 (283)
T PRK14192 159 GKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT--------------QNLPELVKQADIIVGAVGKPEL-IKK----- 218 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc--------------hhHHHHhccCCEEEEccCCCCc-CCH-----
Confidence 47899999998 99999999999999999999832 2345556899999999964321 111
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.+++|.....
T Consensus 219 -~~l-----k~gavViDvg~n~ 234 (283)
T PRK14192 219 -DWI-----KQGAVVVDAGFHP 234 (283)
T ss_pred -HHc-----CCCCEEEEEEEee
Confidence 122 2567888887553
No 262
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.21 E-value=0.0024 Score=55.45 Aligned_cols=75 Identities=15% Similarity=0.198 Sum_probs=58.2
Q ss_pred CCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||-+. +|.+++..|.+.|..|+++++.. .++.+.++++|+||.+++.+.- +..
T Consensus 159 Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvi~avG~p~~-v~~----- 218 (285)
T PRK10792 159 GLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT--------------KNLRHHVRNADLLVVAVGKPGF-IPG----- 218 (285)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC--------------CCHHHHHhhCCEEEEcCCCccc-ccH-----
Confidence 47899999999 99999999999999999998642 3577788999999999965432 222
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 219 -~~v-----k~gavVIDvGin~ 234 (285)
T PRK10792 219 -EWI-----KPGAIVIDVGINR 234 (285)
T ss_pred -HHc-----CCCcEEEEccccc
Confidence 122 2567999988554
No 263
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.20 E-value=0.00044 Score=61.99 Aligned_cols=88 Identities=10% Similarity=0.121 Sum_probs=52.8
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCCeEE---EEeCChhHH-HHHHhCC--CCCc-CCHHHHhhcCCEEEEeCCCChhhHH
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGYKMA---VHDVNCNVM-KMFSDMG--VPTK-ETPFEVAEASDVVITMLPSSSHQVL 77 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~~V~---~~~r~~~~~-~~l~~~g--~~~~-~~~~~~~~~adivi~~vp~~~~~~~ 77 (316)
+||+|+|+ |..|..+.+.|.+++|++. ... +.+.. +.+.-.+ .... .+..+ ++++|++|+|+|... ..
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~-s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~~~--s~ 80 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLA-SSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGAAV--SR 80 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEE-CcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCHHH--HH
Confidence 79999996 9999999999998777533 332 22221 1111111 1111 12233 478999999999654 34
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
.++... . ..+..+||.|+..
T Consensus 81 ~~v~~~---~-----~~G~~VIDlS~~f 100 (336)
T PRK05671 81 SFAEKA---R-----AAGCSVIDLSGAL 100 (336)
T ss_pred HHHHHH---H-----HCCCeEEECchhh
Confidence 444322 1 1456789988654
No 264
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.20 E-value=0.007 Score=50.42 Aligned_cols=67 Identities=21% Similarity=0.306 Sum_probs=50.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh-HHHHHHhCC-CCC---cCCHHHHhhcCCEEEEeCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN-VMKMFSDMG-VPT---KETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~-~~~~l~~~g-~~~---~~~~~~~~~~adivi~~vp~~ 72 (316)
.++|.|||.|.+|..-++.|.+.|.+|++++++.. .+..+.+.| +.. ..+ .+.++.+++||.|+.+.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~-~~dl~~~~lVi~at~d~ 80 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFD-ADILEGAFLVIAATDDE 80 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCC-HHHhCCcEEEEECCCCH
Confidence 47899999999999999999999999999988654 345555543 221 122 34567899999998765
No 265
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.18 E-value=0.0016 Score=58.31 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=52.9
Q ss_pred CCCeEEEEcc-chhhHHHHHHHHhC-C-CeEEEEeCChhHHHHHHhC-CCCCcCCHHHHhhcCCEEEEeCCC
Q 021213 4 FDQSVGFIGL-GNMGFRMASNLMKA-G-YKMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 4 ~~~~IgiiG~-G~mG~~la~~l~~~-g-~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~adivi~~vp~ 71 (316)
..++|.|+|+ |.||+.+++.|... | .++++++|+.++...+.+. +.....+..+++.++|+|+.++..
T Consensus 154 ~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~ 225 (340)
T PRK14982 154 SKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASM 225 (340)
T ss_pred CCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcC
Confidence 3578999998 89999999999854 5 6899999998888776653 211223567888899999998754
No 266
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.14 E-value=0.0068 Score=53.44 Aligned_cols=69 Identities=22% Similarity=0.290 Sum_probs=56.6
Q ss_pred CeEEEEccchhhHHHHHHHH---hCCCeEE-EEeCChhHHHHHHhC-C---CCCcCCHHHHhhcC--CEEEEeCCCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLM---KAGYKMA-VHDVNCNVMKMFSDM-G---VPTKETPFEVAEAS--DVVITMLPSSSH 74 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~---~~g~~V~-~~~r~~~~~~~l~~~-g---~~~~~~~~~~~~~a--divi~~vp~~~~ 74 (316)
-|+||+|+|.|+.-+++.|. +.+|.|+ +++|+.+++..+.+. + .++..|.+|++++. |+|.+..|++++
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH 85 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQH 85 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccH
Confidence 48999999999999999876 3467765 568999998888774 3 35678999999865 999999999887
No 267
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=97.14 E-value=0.0013 Score=57.33 Aligned_cols=68 Identities=22% Similarity=0.302 Sum_probs=51.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHhC----CCC-CcCCHH--HHhhcCCEEEEeCCCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM----GVP-TKETPF--EVAEASDVVITMLPSSS 73 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~----g~~-~~~~~~--~~~~~adivi~~vp~~~ 73 (316)
.++.|+|+|-.+.+++..|++.| .+|+++||+.++.+.+.+. +.. ...... +...++|+||-|+|-.-
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm 202 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGM 202 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCC
Confidence 67999999999999999999999 5899999999998888753 211 111122 11225899999999764
No 268
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=97.14 E-value=0.0015 Score=55.55 Aligned_cols=64 Identities=19% Similarity=0.321 Sum_probs=50.6
Q ss_pred EEEEcc-chhhHHHHHHHHhCCCeEEEEeCChh--HHHHHHhCCCCCc-------CCHHHHhhcCCEEEEeCCC
Q 021213 8 VGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCN--VMKMFSDMGVPTK-------ETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 8 IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~--~~~~l~~~g~~~~-------~~~~~~~~~adivi~~vp~ 71 (316)
|.|+|+ |..|..++..|.+.+|+|.+.-|+++ ..+.+.+.|++.. .++.++++++|.||++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 689985 99999999999999999999999864 3566777775421 2344577899999998873
No 269
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.13 E-value=0.00089 Score=60.62 Aligned_cols=90 Identities=16% Similarity=0.258 Sum_probs=55.2
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCCC-eEEEEeCChhHHHH-HHh---C-----------CCCC-cCCHHHHhhcCCEE
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAGY-KMAVHDVNCNVMKM-FSD---M-----------GVPT-KETPFEVAEASDVV 65 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~-l~~---~-----------g~~~-~~~~~~~~~~adiv 65 (316)
|++||+|+| .|.+|..+.+.|.+..+ ++..+.++++.... +.+ . .... ..+++ .++++|+|
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~DvV 80 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPE-AVDDVDIV 80 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHH-HhcCCCEE
Confidence 357999998 89999999999997654 78877555433211 110 0 0111 12333 34789999
Q ss_pred EEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCC
Q 021213 66 ITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 66 i~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~ 104 (316)
|.|+|.... .+....+ . ..+..+||.|..
T Consensus 81 f~a~p~~~s--~~~~~~~---~-----~~G~~vIDls~~ 109 (349)
T PRK08664 81 FSALPSDVA--GEVEEEF---A-----KAGKPVFSNASA 109 (349)
T ss_pred EEeCChhHH--HHHHHHH---H-----HCCCEEEECCch
Confidence 999998753 4443221 1 134467777753
No 270
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.12 E-value=0.0019 Score=56.88 Aligned_cols=68 Identities=10% Similarity=0.112 Sum_probs=47.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCe-EEEEeCCh---hHHHHHHh----CCC--CC--c--C---CHHHHhhcCCEEEE
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYK-MAVHDVNC---NVMKMFSD----MGV--PT--K--E---TPFEVAEASDVVIT 67 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~-V~~~~r~~---~~~~~l~~----~g~--~~--~--~---~~~~~~~~adivi~ 67 (316)
.+++.|+|+|..|.+++..|++.|.. |++++|++ ++.+.+.+ .+. .. . + +..+.++.+|+||-
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilIN 205 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVN 205 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEE
Confidence 45789999999999999999999985 99999996 55544432 111 11 1 1 12234456799999
Q ss_pred eCCCC
Q 021213 68 MLPSS 72 (316)
Q Consensus 68 ~vp~~ 72 (316)
|+|-.
T Consensus 206 aTp~G 210 (289)
T PRK12548 206 ATLVG 210 (289)
T ss_pred eCCCC
Confidence 88854
No 271
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.11 E-value=0.0059 Score=57.55 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=48.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVIT 67 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~ 67 (316)
++|.|||+|..|.+.|..|.+.|++|+++|+.+.....+.+.|+.......+-+.++|+||.
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~ 71 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVL 71 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEE
Confidence 58999999999999999999999999999987655555666676543322233567999886
No 272
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=97.10 E-value=0.032 Score=47.71 Aligned_cols=114 Identities=17% Similarity=0.134 Sum_probs=74.9
Q ss_pred CCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCC
Q 021213 48 GVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDS 127 (316)
Q Consensus 48 g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~ 127 (316)
|+..++|..|+++++|++|+-+|.... ...+++.+-+.+ +.+.+|.++.|+++.....+-+.+.+.. .|
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~-q~~Iikkii~~l-----pEgAII~~tCTIpt~~ly~ilE~l~R~D----vg- 194 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNK-QPDIIKKFIDDI-----PEGAIVTHACTIPTTKFAKIFEDLGRED----LN- 194 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCC-chHHHHHHHhhC-----CCCCEEeccccCChHHHHHHHHhhCccc----CC-
Confidence 477788899999999999999998764 345555444444 3677999999998876656555554432 22
Q ss_pred CCCccEEeccCCCChHhhhcCceEEEec-CCHHHHHHHHHHHHhcCCCeEeeC
Q 021213 128 WENPVMLDAPVSGGVLAAEAGTLTFMVG-GSEDAYQAAKPLFLSMGKNTIYCG 179 (316)
Q Consensus 128 ~~~~~~~~~p~~~~~~~~~~g~~~~~~~-~~~~~~~~v~~ll~~~g~~v~~~g 179 (316)
...|..+.+-+ .. ++..+.-+ .++|+.+++.++.++.++.++.+.
T Consensus 195 --VsS~HPaaVPg----t~-~q~Yi~egyAtEEqI~klveL~~sa~k~ay~~P 240 (340)
T TIGR01723 195 --VTSYHPGCVPE----MK-GQVYIAEGYASEEAVNKLYELGKKARGKAFKMP 240 (340)
T ss_pred --eeccCCCCCCC----CC-CceEeecccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 12333332222 22 33222222 388999999999999999877553
No 273
>PRK05086 malate dehydrogenase; Provisional
Probab=97.09 E-value=0.0017 Score=57.83 Aligned_cols=66 Identities=26% Similarity=0.313 Sum_probs=46.6
Q ss_pred CeEEEEcc-chhhHHHHHHHHh---CCCeEEEEeCChhHH---HHHHhCC--CCC----cCCHHHHhhcCCEEEEeCCC
Q 021213 6 QSVGFIGL-GNMGFRMASNLMK---AGYKMAVHDVNCNVM---KMFSDMG--VPT----KETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~---~g~~V~~~~r~~~~~---~~l~~~g--~~~----~~~~~~~~~~adivi~~vp~ 71 (316)
|||+|||+ |.+|.+++..|.. .++++.++|+++... -.+.+.+ ... .+++.+.++++|+||+|...
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence 69999999 9999999988754 347899999975431 1233211 111 24556778999999998643
No 274
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.07 E-value=0.0036 Score=59.10 Aligned_cols=46 Identities=22% Similarity=0.237 Sum_probs=41.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP 50 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~ 50 (316)
..||.|+|+|.+|...++.+...|.+|+++|+++++.+...+.|.+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~ 210 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAE 210 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe
Confidence 4689999999999999999999999999999999999988888865
No 275
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=97.03 E-value=0.00085 Score=59.29 Aligned_cols=81 Identities=20% Similarity=0.167 Sum_probs=53.2
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhc
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~ 81 (316)
|++||+||| .|..|..+.+.|.++.+ ++.....+..+ .. .+.++..+++|++|+|+|.... .+...
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~---------~~-~~~~~~~~~~DvvFlalp~~~s--~~~~~ 68 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK---------DA-AARRELLNAADVAILCLPDDAA--REAVA 68 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC---------cc-cCchhhhcCCCEEEECCCHHHH--HHHHH
Confidence 457999998 79999999999988763 33333222111 11 2334556789999999998753 44443
Q ss_pred CCCCcccCCCCCCCeEEEEcCCC
Q 021213 82 GPNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st~ 104 (316)
.+ . ..+..|||.|+.
T Consensus 69 ~~---~-----~~g~~VIDlSad 83 (313)
T PRK11863 69 LI---D-----NPATRVIDASTA 83 (313)
T ss_pred HH---H-----hCCCEEEECChh
Confidence 22 1 145689999864
No 276
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.03 E-value=0.0083 Score=56.28 Aligned_cols=119 Identities=15% Similarity=0.173 Sum_probs=70.1
Q ss_pred CCCCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhH--HHHHHh--CCCCCc--CCHHHHhhcCCEEEEe--CCCC
Q 021213 1 MLFFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV--MKMFSD--MGVPTK--ETPFEVAEASDVVITM--LPSS 72 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~--~~~l~~--~g~~~~--~~~~~~~~~adivi~~--vp~~ 72 (316)
|.+..++|.|+|.|..|.+.|+.|++.|++|+++|.++.. .+.+.+ .|+... ....+...++|+||.. +|..
T Consensus 1 ~~~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~ 80 (445)
T PRK04308 1 MTFQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISER 80 (445)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCC
Confidence 5666789999999999999999999999999999976542 344544 355432 1123344689999984 5543
Q ss_pred hhhHHHHhcCCCCcc------cCCC-C-CCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 73 SHQVLDVYNGPNGLL------QGGN-S-VRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 73 ~~~~~~v~~~~~~~~------~~~~-~-~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
...++...+.-.+++ .... . ....+-|--|+++..++.-+...+...
T Consensus 81 ~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~ 135 (445)
T PRK04308 81 QPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKC 135 (445)
T ss_pred CHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence 221443322111221 1000 0 112344444555566666666666554
No 277
>PRK05442 malate dehydrogenase; Provisional
Probab=97.01 E-value=0.0021 Score=57.49 Aligned_cols=66 Identities=15% Similarity=0.277 Sum_probs=47.0
Q ss_pred CCCeEEEEcc-chhhHHHHHHHHhCCC-------eEEEEeCChh--HH----HHHHhC------CCCCcCCHHHHhhcCC
Q 021213 4 FDQSVGFIGL-GNMGFRMASNLMKAGY-------KMAVHDVNCN--VM----KMFSDM------GVPTKETPFEVAEASD 63 (316)
Q Consensus 4 ~~~~IgiiG~-G~mG~~la~~l~~~g~-------~V~~~~r~~~--~~----~~l~~~------g~~~~~~~~~~~~~ad 63 (316)
.++||+|||+ |.+|..++..|...+. ++.++|++++ ++ ..+.+. ......+..+.+++||
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daD 82 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDAD 82 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCC
Confidence 3579999998 9999999999887663 7999998543 21 112221 2233455667889999
Q ss_pred EEEEeC
Q 021213 64 VVITML 69 (316)
Q Consensus 64 ivi~~v 69 (316)
+||++-
T Consensus 83 iVVita 88 (326)
T PRK05442 83 VALLVG 88 (326)
T ss_pred EEEEeC
Confidence 999964
No 278
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.01 E-value=0.0031 Score=56.08 Aligned_cols=74 Identities=14% Similarity=0.223 Sum_probs=50.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcC-----CHHHHh-hcCCEEEEeCCCChhhHHHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKE-----TPFEVA-EASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~-----~~~~~~-~~adivi~~vp~~~~~~~~v 79 (316)
.+|+|+|+|-+|..-.+.....|.+|+.++|++++.+...+.|+...- +..+.+ +.+|++|.+++ ..+ +...
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~-~~~~ 245 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PAT-LEPS 245 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhh-HHHH
Confidence 689999999888766666666899999999999999888887743211 111222 22677777776 443 4444
Q ss_pred hc
Q 021213 80 YN 81 (316)
Q Consensus 80 ~~ 81 (316)
+.
T Consensus 246 l~ 247 (339)
T COG1064 246 LK 247 (339)
T ss_pred HH
Confidence 43
No 279
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.98 E-value=0.0028 Score=59.55 Aligned_cols=69 Identities=17% Similarity=0.254 Sum_probs=52.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC--CCCC----cCCHHH----HhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM--GVPT----KETPFE----VAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~--g~~~----~~~~~~----~~~~adivi~~vp~~~ 73 (316)
+++|.|+|+|.+|..+++.|.+.|++|+++|+++++.+.+.+. +... .++.+. .++++|.||++++++.
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~ 309 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDDE 309 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCcH
Confidence 4789999999999999999999999999999999998888764 2211 112221 1346788887777653
No 280
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.98 E-value=0.0025 Score=55.87 Aligned_cols=68 Identities=26% Similarity=0.339 Sum_probs=51.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhC-----CC--CCcCC---HHHHhhcCCEEEEeCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-----GV--PTKET---PFEVAEASDVVITMLPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-----g~--~~~~~---~~~~~~~adivi~~vp~~ 72 (316)
.+++.|+|+|-.|.+++..|++.|. +|+++||+.++.+.+.+. +. ....+ ..+.+..+|+||=|+|-.
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~G 205 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMG 205 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCC
Confidence 3579999999999999999999995 799999999998887642 11 01112 123456789999898854
No 281
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.98 E-value=0.0048 Score=53.66 Aligned_cols=75 Identities=13% Similarity=0.204 Sum_probs=57.3
Q ss_pred CCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||-+. +|.+++..|.+.|..|++++... .++.+..++||+||.++.-+.- +..
T Consensus 164 Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvv~AvG~p~~-i~~----- 223 (287)
T PRK14176 164 GKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT--------------DDLKKYTLDADILVVATGVKHL-IKA----- 223 (287)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC--------------CCHHHHHhhCCEEEEccCCccc-cCH-----
Confidence 47899999999 99999999999999999998532 3567778899999998764432 211
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 224 -~~v-----k~gavVIDvGin~ 239 (287)
T PRK14176 224 -DMV-----KEGAVIFDVGITK 239 (287)
T ss_pred -HHc-----CCCcEEEEecccc
Confidence 122 3567999998753
No 282
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.97 E-value=0.0046 Score=53.75 Aligned_cols=75 Identities=15% Similarity=0.199 Sum_probs=56.8
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.++|.|||-| .+|.+++..|.+.|..|++++... .++.+.+++||+||.+++.+.- +..
T Consensus 157 Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~~~ADIvV~AvG~p~~-i~~----- 216 (285)
T PRK14191 157 GKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYTQNADIVCVGVGKPDL-IKA----- 216 (285)
T ss_pred CCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHHHhCCEEEEecCCCCc-CCH-----
Confidence 4789999999 999999999999999999986432 2345678899999999976532 111
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
.++ .++.++||.+...
T Consensus 217 -~~v-----k~GavVIDvGi~~ 232 (285)
T PRK14191 217 -SMV-----KKGAVVVDIGINR 232 (285)
T ss_pred -HHc-----CCCcEEEEeeccc
Confidence 122 2667999988654
No 283
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=96.96 E-value=0.0035 Score=55.92 Aligned_cols=60 Identities=15% Similarity=0.232 Sum_probs=43.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~v 69 (316)
.++|.|||+|.||...+++|.++| .+|++.+|+.... .+.+.. ....+...++|+||.|+
T Consensus 174 ~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~-~~~~~~----~~~~~~~~~~DvVIs~t 234 (338)
T PRK00676 174 KASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTL-PYRTVV----REELSFQDPYDVIFFGS 234 (338)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcccc-chhhhh----hhhhhcccCCCEEEEcC
Confidence 478999999999999999999999 5699999997531 111100 01113346899999974
No 284
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.95 E-value=0.0046 Score=57.91 Aligned_cols=75 Identities=27% Similarity=0.519 Sum_probs=58.9
Q ss_pred CCCCCeEEEEcc----chhhHHHHHHHHhCCC--eEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhh
Q 021213 2 LFFDQSVGFIGL----GNMGFRMASNLMKAGY--KMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQ 75 (316)
Q Consensus 2 ~~~~~~IgiiG~----G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~ 75 (316)
+|..++|+|||+ |.+|..+.++|.+.|| +|+.+++..+.+ .|.....+..++-...|++++++|...
T Consensus 4 l~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i-----~G~~~~~sl~~lp~~~Dlavi~vp~~~-- 76 (447)
T TIGR02717 4 LFNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI-----LGVKAYPSVLEIPDPVDLAVIVVPAKY-- 76 (447)
T ss_pred ccCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc-----CCccccCCHHHCCCCCCEEEEecCHHH--
Confidence 355689999999 8899999999999998 576666653321 477888899998888999999999765
Q ss_pred HHHHhcCC
Q 021213 76 VLDVYNGP 83 (316)
Q Consensus 76 ~~~v~~~~ 83 (316)
+.+++++.
T Consensus 77 ~~~~l~e~ 84 (447)
T TIGR02717 77 VPQVVEEC 84 (447)
T ss_pred HHHHHHHH
Confidence 56666543
No 285
>PRK08374 homoserine dehydrogenase; Provisional
Probab=96.90 E-value=0.0026 Score=57.24 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.2
Q ss_pred CCeEEEEccchhhHHHHHHHHh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMK 26 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~ 26 (316)
+++|+|+|+|++|+.+++.|.+
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~ 23 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAE 23 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHH
Confidence 5799999999999999998877
No 286
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.89 E-value=0.00097 Score=55.99 Aligned_cols=69 Identities=22% Similarity=0.316 Sum_probs=47.1
Q ss_pred CCeEEEEccchhhHHHHHHH--HhCCCeEE-EEeCChhHHHHHHh-CCCCCcCCHHHHhhc--CCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNL--MKAGYKMA-VHDVNCNVMKMFSD-MGVPTKETPFEVAEA--SDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l--~~~g~~V~-~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~--adivi~~vp~~~ 73 (316)
..+|+|||+|.+|..++..+ ...|+++. ++|+++++.....+ ..+....+..+.+++ .|.+++|+|...
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~ 158 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEA 158 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchh
Confidence 35899999999999999863 35677766 56888765532211 112233456666654 999999999865
No 287
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.89 E-value=0.004 Score=56.01 Aligned_cols=40 Identities=28% Similarity=0.388 Sum_probs=33.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMF 44 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l 44 (316)
..||.|||+|.+|+.++..|+++|. +++++|.+.-....+
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL 64 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNL 64 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHc
Confidence 4789999999999999999999997 899999875333333
No 288
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.88 E-value=0.005 Score=51.61 Aligned_cols=33 Identities=27% Similarity=0.567 Sum_probs=30.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVN 37 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~ 37 (316)
..+|.|||+|.+|+.++..|++.|. +++++|.+
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4689999999999999999999996 59999987
No 289
>PF07479 NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; InterPro: IPR006109 NAD-dependent glycerol-3-phosphate dehydrogenase (1.1.1.8 from EC) (GPD) catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. It is a cytoplasmic protein, active as a homodimer [], each monomer containing an N-terminal NAD binding site []. In insects, it acts in conjunction with a mitochondrial alpha-glycerophosphate oxidase in the alpha-glycerophosphate cycle, which is essential for the production of energy used in insect flight [].; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0005975 carbohydrate metabolic process, 0055114 oxidation-reduction process; PDB: 2PLA_A 3K96_A 1N1G_A 1M67_A 1JDJ_A 1N1E_B 1EVZ_A 1EVY_A 1M66_A 1TXG_B ....
Probab=96.88 E-value=8.4e-06 Score=64.05 Aligned_cols=116 Identities=18% Similarity=0.174 Sum_probs=74.8
Q ss_pred CeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHhhccC--CccccccCCCCCCccc--C-CC
Q 021213 174 NTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISAS-TLTKILNSSSA--RCWSSDSYNPVPGVME--G-VP 247 (316)
Q Consensus 174 ~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~-~~~~~~~~~~~--~s~~~~~~~~~~~~~~--~-~~ 247 (316)
|++.++. |....+++..|...+.+..++.|+..++++.|-+++ +++++...++. ++.+...+++..+... + ..
T Consensus 14 Ni~Aia~-Gi~~g~~~g~N~~aal~t~g~~Em~~l~~~~gg~~~~t~~~laGlGDLi~T~~s~~sRN~~~G~~l~~g~~~ 92 (149)
T PF07479_consen 14 NIYAIAA-GIADGLGLGDNTKAALITRGLAEMSRLAKALGGDPENTFFGLAGLGDLILTCTSDKSRNRRFGKALGKGGKS 92 (149)
T ss_dssp HHHHHHH-HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTSSCCGGGCSTTTHHHHHHHHHHTTSHHHHHHHHHHHTTS-
T ss_pred HHHHHHH-HHHHcCCCCCChHHHHHHHHHHHHHHHHHHhCCCCcccccccchHhhhHHHhcCCCCCcHHHHHHHHccCCC
Confidence 3444433 666667788999999999999999999999999999 77666555542 2222222322222211 1 00
Q ss_pred CCCCCC---CCcchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 021213 248 ASRNYG---GGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAK 291 (316)
Q Consensus 248 ~~~~~~---~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 291 (316)
.+ +.. ....+.+....++.+.+++++.++++|+++++++++..
T Consensus 93 ~~-~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i~~Pl~~~vy~Il~~ 138 (149)
T PF07479_consen 93 IE-EAEKEMLGGQTVEGVRTAKIVYELAEKYNIEFPLFTAVYKILYE 138 (149)
T ss_dssp HH-HHHHHHTTTS--HHHHHHHHHHHHHHHCT-GSHHHHHHHHHHHS
T ss_pred HH-HHHHhhhhcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHcC
Confidence 00 000 01233567778889999999999999999999998864
No 290
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.87 E-value=0.0022 Score=57.24 Aligned_cols=65 Identities=11% Similarity=0.222 Sum_probs=46.9
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCC-------eEEEEeCChhH--H----HHHHhC------CCCCcCCHHHHhhcCCE
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGY-------KMAVHDVNCNV--M----KMFSDM------GVPTKETPFEVAEASDV 64 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~-------~V~~~~r~~~~--~----~~l~~~------g~~~~~~~~~~~~~adi 64 (316)
++||+|||+ |.+|..++..|+..|. ++.++|++++. + ..+.+. ......+..+.+++||+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDi 81 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADW 81 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCE
Confidence 479999999 9999999999998774 79999995432 2 122221 12233455677899999
Q ss_pred EEEeC
Q 021213 65 VITML 69 (316)
Q Consensus 65 vi~~v 69 (316)
||++-
T Consensus 82 vvita 86 (322)
T cd01338 82 ALLVG 86 (322)
T ss_pred EEEeC
Confidence 99964
No 291
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=96.85 E-value=0.0031 Score=54.74 Aligned_cols=96 Identities=19% Similarity=0.253 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHh---hccCCccccccCCCCCCcccCCCCCCCCCCCcchh
Q 021213 184 GAAAKICNNLTMAVSMLGVSEALTLGQ-SLGISASTLTKILN---SSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASK 259 (316)
Q Consensus 184 a~~~k~~~n~~~~~~~~~~~Ea~~l~~-~~G~~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (316)
|+.+||++|.+.++.|++++|++.+.+ ..|++++++.++.. .+...||..+.... .+. ..+..+.+-++
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~---il~----~~d~~g~~lld 73 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITAD---ILR----KKDETGGPLLD 73 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHH---HHT-----B-TTSSBGGG
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHH---HHh----hccCccCcchh
Confidence 678999999999999999999999998 47888877755554 55555554321100 010 11100000011
Q ss_pred hH------HHHHHHHHHHHHHcCCCCcHHHHHH
Q 021213 260 LM------AKDLNLALASAKEVGVDCPLTSQAQ 286 (316)
Q Consensus 260 ~~------~kd~~~~~~~a~~~g~~~p~~~~~~ 286 (316)
.+ .-+-...++.|-++|+|+|++.++.
T Consensus 74 ~I~d~a~~kGtG~Wt~~~a~~~gvp~p~I~~a~ 106 (291)
T PF00393_consen 74 KILDKAGQKGTGKWTVQEALELGVPAPTIAAAV 106 (291)
T ss_dssp GB-S----BSHHHHHHHHHHHHT---HHHHHHH
T ss_pred hhCCccCCCCccchHHHHHHHhCCCccHHHHHH
Confidence 00 0112467888999999999998776
No 292
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=96.82 E-value=0.017 Score=49.20 Aligned_cols=104 Identities=20% Similarity=0.299 Sum_probs=66.3
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCC-Ce-EEEEeCChhHH-----HHH---HhCCCCCcCCHHHHhhcCCEEEE-eCCCC
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAG-YK-MAVHDVNCNVM-----KMF---SDMGVPTKETPFEVAEASDVVIT-MLPSS 72 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g-~~-V~~~~r~~~~~-----~~l---~~~g~~~~~~~~~~~~~adivi~-~vp~~ 72 (316)
+|||+|.|+ |+||..+.+.+.... ++ +-.++|.++.. ..+ ...|+...+++.....++|++|= ..|+.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~P~~ 81 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTTPEA 81 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECCCchh
Confidence 579999999 999999999998776 45 44567765421 112 12356666777777789999998 45644
Q ss_pred hhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhh
Q 021213 73 SHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSN 118 (316)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~ 118 (316)
..+.+.- .++ .+..+||-++.-++...+.+.+....
T Consensus 82 ---~~~~l~~---~~~----~~~~lVIGTTGf~~e~~~~l~~~a~~ 117 (266)
T COG0289 82 ---TLENLEF---ALE----HGKPLVIGTTGFTEEQLEKLREAAEK 117 (266)
T ss_pred ---hHHHHHH---HHH----cCCCeEEECCCCCHHHHHHHHHHHhh
Confidence 2333321 111 12236666666667777777766554
No 293
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.82 E-value=0.013 Score=45.74 Aligned_cols=33 Identities=33% Similarity=0.585 Sum_probs=29.7
Q ss_pred eEEEEccchhhHHHHHHHHhCCC-eEEEEeCChh
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCN 39 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~ 39 (316)
||.|||+|.+|+.++..|++.|. +++++|.+.-
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v 34 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTV 34 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence 58999999999999999999996 7999997643
No 294
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.80 E-value=0.0076 Score=52.26 Aligned_cols=75 Identities=16% Similarity=0.231 Sum_probs=57.0
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||-+ .+|.+++..|.+.|..|++++... .++.+..++||+||+++..+.- +..
T Consensus 157 Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T--------------~~l~~~~~~ADIvV~AvGkp~~-i~~----- 216 (281)
T PRK14183 157 GKDVCVVGASNIVGKPMAALLLNANATVDICHIFT--------------KDLKAHTKKADIVIVGVGKPNL-ITE----- 216 (281)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCcccc-cCH-----
Confidence 4789999999 899999999999999999886432 3456778999999999976532 111
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 217 -~~v-----k~gavvIDvGin~ 232 (281)
T PRK14183 217 -DMV-----KEGAIVIDIGINR 232 (281)
T ss_pred -HHc-----CCCcEEEEeeccc
Confidence 122 2567999988654
No 295
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=96.80 E-value=0.0053 Score=54.81 Aligned_cols=65 Identities=17% Similarity=0.291 Sum_probs=47.0
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCC-------eEEEEeCCh--hHH----HHHHhC------CCCCcCCHHHHhhcCCE
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGY-------KMAVHDVNC--NVM----KMFSDM------GVPTKETPFEVAEASDV 64 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~-------~V~~~~r~~--~~~----~~l~~~------g~~~~~~~~~~~~~adi 64 (316)
+.||+|||+ |.+|..++..|...+. ++.++|+++ +++ ..+.+. +.....+..+.+++||+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDv 82 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDA 82 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCE
Confidence 469999998 9999999999998873 799999954 222 122221 12233456678899999
Q ss_pred EEEeC
Q 021213 65 VITML 69 (316)
Q Consensus 65 vi~~v 69 (316)
||++-
T Consensus 83 VVitA 87 (323)
T TIGR01759 83 ALLVG 87 (323)
T ss_pred EEEeC
Confidence 99964
No 296
>PTZ00325 malate dehydrogenase; Provisional
Probab=96.80 E-value=0.0025 Score=56.79 Aligned_cols=66 Identities=15% Similarity=0.137 Sum_probs=45.4
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCC--CeEEEEeCChhHH--HHHHhCC----CCCcCC---HHHHhhcCCEEEEeCC
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAG--YKMAVHDVNCNVM--KMFSDMG----VPTKET---PFEVAEASDVVITMLP 70 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g--~~V~~~~r~~~~~--~~l~~~g----~~~~~~---~~~~~~~adivi~~vp 70 (316)
++||+|||+ |.+|+.++..|+..+ .++.++|++.... ..+.+.. +...++ ..+.+++||+||++..
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG 85 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence 469999999 999999999998655 6899999943222 1222211 111222 2578899999999753
No 297
>PLN00106 malate dehydrogenase
Probab=96.79 E-value=0.0044 Score=55.28 Aligned_cols=65 Identities=15% Similarity=0.172 Sum_probs=46.6
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCC--CeEEEEeCChhHH--HHHHhC----CCC---CcCCHHHHhhcCCEEEEeC
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAG--YKMAVHDVNCNVM--KMFSDM----GVP---TKETPFEVAEASDVVITML 69 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g--~~V~~~~r~~~~~--~~l~~~----g~~---~~~~~~~~~~~adivi~~v 69 (316)
+.||+|||+ |.+|..++..|+..+ .++.++|+++... ..+.+. .+. ..++..++++++|+||++.
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitA 94 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPA 94 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeC
Confidence 369999999 999999999999766 4899999976221 122221 111 2334578899999999964
No 298
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=96.77 E-value=0.01 Score=55.71 Aligned_cols=114 Identities=18% Similarity=0.360 Sum_probs=68.0
Q ss_pred eEEEEccchhhHH-HHHHHHhCCCeEEEEeCChh-HHHHHHhCCCCCcC-CHHHHhhcCCEEEEe--CCCChhhHHHHhc
Q 021213 7 SVGFIGLGNMGFR-MASNLMKAGYKMAVHDVNCN-VMKMFSDMGVPTKE-TPFEVAEASDVVITM--LPSSSHQVLDVYN 81 (316)
Q Consensus 7 ~IgiiG~G~mG~~-la~~l~~~g~~V~~~~r~~~-~~~~l~~~g~~~~~-~~~~~~~~adivi~~--vp~~~~~~~~v~~ 81 (316)
+|-|||.|..|.+ +|+.|.+.|++|+++|.+.. ..+.+.+.|+.... ...+.++++|+||.. +|.+...++...+
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~ 80 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKE 80 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHH
Confidence 4789999999997 99999999999999997543 34456666765532 223445679998884 5543221443322
Q ss_pred CCCCcccCC----CC--CCCeEEEEcCCCCHHHHHHHHHHHhhch
Q 021213 82 GPNGLLQGG----NS--VRPQLLIDSSTIDPQTSRNISAAVSNCI 120 (316)
Q Consensus 82 ~~~~~~~~~----~~--~~~~~vi~~st~~~~~~~~l~~~~~~~~ 120 (316)
.-.+++... .. .+..+-|--|.++..++.-+...+...+
T Consensus 81 ~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g 125 (448)
T TIGR01082 81 RGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAG 125 (448)
T ss_pred cCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcC
Confidence 111111100 00 1223444445555667677777776543
No 299
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.76 E-value=0.003 Score=56.02 Aligned_cols=64 Identities=20% Similarity=0.214 Sum_probs=45.3
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCC--CeEEEEeCChhH--HHHHHhC----CCCCc---CCHHHHhhcCCEEEEeC
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAG--YKMAVHDVNCNV--MKMFSDM----GVPTK---ETPFEVAEASDVVITML 69 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g--~~V~~~~r~~~~--~~~l~~~----g~~~~---~~~~~~~~~adivi~~v 69 (316)
|||+|||+ |.+|..+|..|+..+ .++.++|++... +..+.+. .+... +++.+.+++||+||++.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvita 76 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPA 76 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeC
Confidence 69999999 999999999999888 489999987111 1223321 12211 23367789999999974
No 300
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=96.73 E-value=0.0028 Score=55.79 Aligned_cols=64 Identities=25% Similarity=0.342 Sum_probs=45.2
Q ss_pred CeEEEEccchhhHHHHHHHHhCC--CeEEEEeCChhHH----HHHHhC------CCCCcC-CHHHHhhcCCEEEEeC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG--YKMAVHDVNCNVM----KMFSDM------GVPTKE-TPFEVAEASDVVITML 69 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g--~~V~~~~r~~~~~----~~l~~~------g~~~~~-~~~~~~~~adivi~~v 69 (316)
+||+|||+|.+|+++|..|...+ .++.++|++.++. ..+.+. ...... ..-+.++++|+|+++-
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence 58999999999999999997765 4899999985542 222221 122222 2256678999999974
No 301
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.72 E-value=0.0039 Score=45.82 Aligned_cols=66 Identities=20% Similarity=0.173 Sum_probs=45.0
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCC-cCCHHHHhhcCCEEEEeCCCCh
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPT-KETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~-~~~~~~~~~~adivi~~vp~~~ 73 (316)
...+|.|||.|.+|..=++.|.+.|.+|++++++.+..+ ..++. ....++.++++++||.|+++..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----~~i~~~~~~~~~~l~~~~lV~~at~d~~ 72 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----GLIQLIRREFEEDLDGADLVFAATDDPE 72 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----TSCEEEESS-GGGCTTESEEEE-SS-HH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----hHHHHHhhhHHHHHhhheEEEecCCCHH
Confidence 357899999999999999999999999999998851111 21111 1122345677888888886644
No 302
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.72 E-value=0.0042 Score=54.91 Aligned_cols=92 Identities=23% Similarity=0.270 Sum_probs=57.0
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHhC-----C---CCC-cCCHHHH-hhcCCEEEEeCCC
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDM-----G---VPT-KETPFEV-AEASDVVITMLPS 71 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~-----g---~~~-~~~~~~~-~~~adivi~~vp~ 71 (316)
|++||+|+| .|+-|.-+.+.|..+- .++..+..+..+-+.+.+. | ... ..+++++ .++||+||+|+|.
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPh 80 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPH 80 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCc
Confidence 357999996 5999999999998765 3666665443222333331 1 111 1233333 4469999999999
Q ss_pred ChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 72 SSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
... .+.+..+ +. ++..|||+|+-.
T Consensus 81 g~s--~~~v~~l---~~-----~g~~VIDLSadf 104 (349)
T COG0002 81 GVS--AELVPEL---LE-----AGCKVIDLSADF 104 (349)
T ss_pred hhH--HHHHHHH---Hh-----CCCeEEECCccc
Confidence 864 4444322 21 344699999865
No 303
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.72 E-value=0.013 Score=59.27 Aligned_cols=115 Identities=19% Similarity=0.237 Sum_probs=68.8
Q ss_pred CeEEEEccchhhHHH-HHHHHhCCCeEEEEeCChh-HHHHHHhCCCCCcC-CHHHHhhcCCEEEEe--CCCChhhHHHHh
Q 021213 6 QSVGFIGLGNMGFRM-ASNLMKAGYKMAVHDVNCN-VMKMFSDMGVPTKE-TPFEVAEASDVVITM--LPSSSHQVLDVY 80 (316)
Q Consensus 6 ~~IgiiG~G~mG~~l-a~~l~~~g~~V~~~~r~~~-~~~~l~~~g~~~~~-~~~~~~~~adivi~~--vp~~~~~~~~v~ 80 (316)
++|.|||+|..|.+. |+.|.+.|++|+++|.++. ..+.+.+.|+.... ...+.+.++|+||.. +|.....++...
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~ 84 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAK 84 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHH
Confidence 469999999999886 9999999999999997543 34557777765432 233556789998883 554322133332
Q ss_pred cCCCCcccCC----CC-CC-CeEEEEcCCCCHHHHHHHHHHHhhch
Q 021213 81 NGPNGLLQGG----NS-VR-PQLLIDSSTIDPQTSRNISAAVSNCI 120 (316)
Q Consensus 81 ~~~~~~~~~~----~~-~~-~~~vi~~st~~~~~~~~l~~~~~~~~ 120 (316)
..--+++... .. .. ..+-|--|.++..++.-+...+...+
T Consensus 85 ~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g 130 (809)
T PRK14573 85 SRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAK 130 (809)
T ss_pred HCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 2111111100 00 11 23444445555666677777776543
No 304
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.72 E-value=0.017 Score=54.33 Aligned_cols=114 Identities=12% Similarity=0.110 Sum_probs=66.2
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh--HHHHHHh--CCCCCcC--CHHHHhhcCCEEEEe--CCCChhhHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN--VMKMFSD--MGVPTKE--TPFEVAEASDVVITM--LPSSSHQVL 77 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~--~~~~l~~--~g~~~~~--~~~~~~~~adivi~~--vp~~~~~~~ 77 (316)
-.|.|+|+|..|.++|+.|.+.|++|+++|..+. ..+.+.+ .|+.... ...+.+.++|+||.. +|.+...+.
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~~ 86 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPALR 86 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHHH
Confidence 5799999999999999999999999999997543 2344555 3655422 123445689988883 554322133
Q ss_pred HHhcCCCCcccCC----CCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 78 DVYNGPNGLLQGG----NSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 78 ~v~~~~~~~~~~~----~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
.....-.+++... ...+.++|-.+ |.++..++.-+...+...
T Consensus 87 ~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~ 133 (448)
T PRK03803 87 AAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAA 133 (448)
T ss_pred HHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence 3322111111100 01122244444 444566666666666554
No 305
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.70 E-value=0.0064 Score=50.35 Aligned_cols=34 Identities=26% Similarity=0.470 Sum_probs=30.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~ 38 (316)
..||.|+|+|.+|+.++.+|+.+|. +++++|.+.
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 4789999999999999999999995 699999764
No 306
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.70 E-value=0.0033 Score=53.36 Aligned_cols=34 Identities=29% Similarity=0.430 Sum_probs=30.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~ 38 (316)
+.+|.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 4689999999999999999999995 799998754
No 307
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=96.69 E-value=0.012 Score=55.09 Aligned_cols=111 Identities=18% Similarity=0.212 Sum_probs=65.0
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCChhH-HH----HHH-hCCCCCc--CCHHHHhhcCCEEEEe--CCCChhhH
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV-MK----MFS-DMGVPTK--ETPFEVAEASDVVITM--LPSSSHQV 76 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~-~~----~l~-~~g~~~~--~~~~~~~~~adivi~~--vp~~~~~~ 76 (316)
||.|||+|..|.++|+.|.+.|++|+++|..+.. .. .+. ..|+... .+ .+.++++|+||.. +|.+...+
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~ 79 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV 79 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence 5899999999999999999999999999975442 11 122 2465432 23 4456789998884 55432213
Q ss_pred HHHhcCCCCcc------cCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 77 LDVYNGPNGLL------QGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 77 ~~v~~~~~~~~------~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
......-.+++ ... .....+-|--|.++..++.-+...+...
T Consensus 80 ~~a~~~~i~i~~~~e~~~~~-~~~~~I~VTGT~GKTTTt~li~~iL~~~ 127 (433)
T TIGR01087 80 QAAAKRGIPVVGDIELFLRL-VPLPVVAITGTNGKTTTTSLLYHLLKAA 127 (433)
T ss_pred HHHHHCCCcEEEHHHHHHhh-cCCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence 33222111111 110 1122344444555566666666776654
No 308
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=96.68 E-value=0.0064 Score=51.67 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=37.5
Q ss_pred CCCCCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHH
Q 021213 1 MLFFDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 44 (316)
Q Consensus 1 ~~~~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 44 (316)
|.|++++|.|.|. |.+|..+++.|++.|++|++.+|++++.+.+
T Consensus 1 ~~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~ 45 (246)
T PRK05653 1 MSLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEAL 45 (246)
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHH
Confidence 5666678999975 9999999999999999999999998765543
No 309
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=96.68 E-value=0.0062 Score=53.01 Aligned_cols=65 Identities=20% Similarity=0.295 Sum_probs=49.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhC-CCCCcCCHHHHhhcCCEEEEeCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDM-GVPTKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~adivi~~vp~~ 72 (316)
.++.|+|+|..+.+++..|.+.|. +|++++|++++.+.+.+. +.....+. ....+|+||-|+|-.
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~G 189 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPIG 189 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCccc
Confidence 479999999999999999999996 699999999998888653 22111111 124589999999854
No 310
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.68 E-value=0.039 Score=54.58 Aligned_cols=117 Identities=11% Similarity=0.167 Sum_probs=80.0
Q ss_pred EEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHh
Q 021213 65 VITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLA 144 (316)
Q Consensus 65 vi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~ 144 (316)
||+|+|-.. +.+++.++.+.++ ++.+|.|.++++....+.+.+.++... ...+-.+|+.|+...
T Consensus 1 vila~Pv~~--~~~~~~~~~~~~~-----~~~~vtDv~SvK~~i~~~~~~~l~~~~---------~~fvg~HPMaG~e~~ 64 (673)
T PRK11861 1 VLLAAPVAQ--TGPLLARIAPFLD-----ASTIVTDAGSTKSDVVAAARAALGARI---------GQFVPGHPIAGRESS 64 (673)
T ss_pred CEEEcCHHH--HHHHHHHHhhhCC-----CCcEEEecCcccHHHHHHHHHhccccC---------CeEEecCCcCcCcch
Confidence 689999655 6788877666553 567999999999777676666543210 012345677765432
Q ss_pred h--------hcCceEEEec---CCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHH
Q 021213 145 A--------EAGTLTFMVG---GSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAV 197 (316)
Q Consensus 145 ~--------~~g~~~~~~~---~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~ 197 (316)
- .++...+++- .+.+.+++++++++.+|.+++.+....+-..+-++.......
T Consensus 65 G~~~a~~~Lf~~~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~ 128 (673)
T PRK11861 65 GVDAALADLYVGRNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVL 128 (673)
T ss_pred hhhhhChhHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHH
Confidence 2 3556555552 367889999999999999998888777777776666654433
No 311
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.67 E-value=0.0055 Score=58.37 Aligned_cols=66 Identities=20% Similarity=0.217 Sum_probs=48.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh--HHHHHHhC--CCCCcC--CHHHHhhcCCEEEEe--CCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN--VMKMFSDM--GVPTKE--TPFEVAEASDVVITM--LPS 71 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~--~~~~l~~~--g~~~~~--~~~~~~~~adivi~~--vp~ 71 (316)
++|.|+|.|..|.++|+.|.+.|++|+++|.+.. ..+.+.+. |+.... ..++.++++|+||.. +|.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~ 81 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSP 81 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCC
Confidence 5799999999999999999999999999997542 33445555 333221 234556689999985 554
No 312
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.67 E-value=0.0057 Score=53.74 Aligned_cols=68 Identities=10% Similarity=0.145 Sum_probs=48.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh---hHHHHHHhC-C----CC-CcCCH------HHHhhcCCEEEEe
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC---NVMKMFSDM-G----VP-TKETP------FEVAEASDVVITM 68 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~---~~~~~l~~~-g----~~-~~~~~------~~~~~~adivi~~ 68 (316)
.+++.|+|+|..+.+++..|+..|. +|++++|++ ++.+.+.+. + .. ...+. .+.+.++|+||-|
T Consensus 124 ~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivINa 203 (288)
T PRK12749 124 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNG 203 (288)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEEEC
Confidence 3579999999999999999999884 899999995 466666542 1 10 11122 2244578999998
Q ss_pred CCCC
Q 021213 69 LPSS 72 (316)
Q Consensus 69 vp~~ 72 (316)
+|-.
T Consensus 204 Tp~G 207 (288)
T PRK12749 204 TKVG 207 (288)
T ss_pred CCCC
Confidence 8854
No 313
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.63 E-value=0.0021 Score=51.53 Aligned_cols=68 Identities=21% Similarity=0.295 Sum_probs=46.6
Q ss_pred CeEEEEccchhhHHHHHH-HH-hCCCeE-EEEeCChhHHHHHHhC-CCCCcCCHHHHhh--cCCEEEEeCCCCh
Q 021213 6 QSVGFIGLGNMGFRMASN-LM-KAGYKM-AVHDVNCNVMKMFSDM-GVPTKETPFEVAE--ASDVVITMLPSSS 73 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~-l~-~~g~~V-~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~--~adivi~~vp~~~ 73 (316)
-++.+||+|++|.+++.. +. ++|+++ .++|.+++++-.-... -+.-.+++++.++ +.|+.|+|||...
T Consensus 85 tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~~ 158 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAEH 158 (211)
T ss_pred eeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHHH
Confidence 478999999999999875 33 566764 4789998865332221 1222345555555 6889999999754
No 314
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=96.62 E-value=0.0023 Score=57.34 Aligned_cols=91 Identities=13% Similarity=0.138 Sum_probs=55.2
Q ss_pred CCCCeEEEEcc-chhhHHHHHHHHhCCC---eEEEEeCChhHHHH--HHhCCCCCcCCHHHH-hhcCCEEEEeCCCChhh
Q 021213 3 FFDQSVGFIGL-GNMGFRMASNLMKAGY---KMAVHDVNCNVMKM--FSDMGVPTKETPFEV-AEASDVVITMLPSSSHQ 75 (316)
Q Consensus 3 ~~~~~IgiiG~-G~mG~~la~~l~~~g~---~V~~~~r~~~~~~~--l~~~g~~~~~~~~~~-~~~adivi~~vp~~~~~ 75 (316)
.+.++|+|||+ |..|.-+.+.|.+..| ++..+....+.-+. +........ ++++. .+++|++|+|+|....
T Consensus 2 ~~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~~~s- 79 (336)
T PRK08040 2 SEGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWSQAQLAFFVAGREAS- 79 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhccCCCEEEECCCHHHH-
Confidence 45689999987 9999999999998654 45555433221111 111112221 33333 2689999999998653
Q ss_pred HHHHhcCCCCcccCCCCCCCeEEEEcCCC
Q 021213 76 VLDVYNGPNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 76 ~~~v~~~~~~~~~~~~~~~~~~vi~~st~ 104 (316)
.++.... . ..+..|||.|+.
T Consensus 80 -~~~~~~~---~-----~~g~~VIDlS~~ 99 (336)
T PRK08040 80 -AAYAEEA---T-----NAGCLVIDSSGL 99 (336)
T ss_pred -HHHHHHH---H-----HCCCEEEECChH
Confidence 4444322 1 145688888854
No 315
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.60 E-value=0.0031 Score=56.37 Aligned_cols=63 Identities=21% Similarity=0.291 Sum_probs=45.5
Q ss_pred eEEEEcc-chhhHHHHHHHHhCC-------CeEEEEeCCh--hHHHH----HHhC------CCCCcCCHHHHhhcCCEEE
Q 021213 7 SVGFIGL-GNMGFRMASNLMKAG-------YKMAVHDVNC--NVMKM----FSDM------GVPTKETPFEVAEASDVVI 66 (316)
Q Consensus 7 ~IgiiG~-G~mG~~la~~l~~~g-------~~V~~~~r~~--~~~~~----l~~~------g~~~~~~~~~~~~~adivi 66 (316)
||+|||+ |.+|+.++..|+..+ +++.++|++. ++.+. +.+. +.....+..+.+++||+||
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 8999999 999999999998765 2599999987 43211 1111 1223356678889999999
Q ss_pred EeC
Q 021213 67 TML 69 (316)
Q Consensus 67 ~~v 69 (316)
++-
T Consensus 82 itA 84 (323)
T cd00704 82 LVG 84 (323)
T ss_pred EeC
Confidence 863
No 316
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.60 E-value=0.0038 Score=55.89 Aligned_cols=65 Identities=18% Similarity=0.246 Sum_probs=45.9
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCC-------CeEEEEeCChhH--HHH----HHh------CCCCCcCCHHHHhhcCCE
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAG-------YKMAVHDVNCNV--MKM----FSD------MGVPTKETPFEVAEASDV 64 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g-------~~V~~~~r~~~~--~~~----l~~------~g~~~~~~~~~~~~~adi 64 (316)
+.||+|+|+ |.+|+.++..|...+ .+|.++|+++.. .+. +.+ ..+....+..+.+++||+
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDi 81 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDV 81 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCE
Confidence 468999999 999999999998744 589999996531 211 111 012223566688899999
Q ss_pred EEEeC
Q 021213 65 VITML 69 (316)
Q Consensus 65 vi~~v 69 (316)
||.+-
T Consensus 82 VI~tA 86 (325)
T cd01336 82 AILVG 86 (325)
T ss_pred EEEeC
Confidence 99863
No 317
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.59 E-value=0.011 Score=51.29 Aligned_cols=75 Identities=13% Similarity=0.204 Sum_probs=57.5
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
..++.|||-+ ..|.+++..|...|..|+++.++. .++.+.+++||+||.+++.+.- +..
T Consensus 152 Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk~~l-v~~----- 211 (279)
T PRK14178 152 GKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGKAGF-ITP----- 211 (279)
T ss_pred CCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCcccc-cCH-----
Confidence 4789999999 999999999999999999998753 3567778899999999975421 111
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+...
T Consensus 212 -~~v-----k~GavVIDVgi~~ 227 (279)
T PRK14178 212 -DMV-----KPGATVIDVGINQ 227 (279)
T ss_pred -HHc-----CCCcEEEEeeccc
Confidence 122 2667999988653
No 318
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=96.57 E-value=0.0051 Score=56.99 Aligned_cols=64 Identities=16% Similarity=0.189 Sum_probs=48.5
Q ss_pred CeEEEEcc-chhhHHHHHHHHhC-------CC--eEEEEeCChhHHHHH----HhC------CCCCcCCHHHHhhcCCEE
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKA-------GY--KMAVHDVNCNVMKMF----SDM------GVPTKETPFEVAEASDVV 65 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~-------g~--~V~~~~r~~~~~~~l----~~~------g~~~~~~~~~~~~~adiv 65 (316)
-||+|||+ |.+|..++..|+.. +. ++.++|++.++++.. ++. .+.+..+..+.+++||+|
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiV 180 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWA 180 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEE
Confidence 58999999 99999999999987 54 788999998865332 221 233335566788999999
Q ss_pred EEeC
Q 021213 66 ITML 69 (316)
Q Consensus 66 i~~v 69 (316)
|++-
T Consensus 181 VitA 184 (444)
T PLN00112 181 LLIG 184 (444)
T ss_pred EECC
Confidence 9964
No 319
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.56 E-value=0.073 Score=44.40 Aligned_cols=68 Identities=21% Similarity=0.252 Sum_probs=50.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh-hHHHHHHhCC-CCC---cCCHHHHhhcCCEEEEeCCCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC-NVMKMFSDMG-VPT---KETPFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~-~~~~~l~~~g-~~~---~~~~~~~~~~adivi~~vp~~~ 73 (316)
.++|.|||.|..|..=++.|.+.|-+|+++.... +....+.+.+ +.. .-++.+ +..+++||.|+++..
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~~ 84 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDEE 84 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCHH
Confidence 4789999999999999999999999999998765 5555555543 221 223333 345999999998753
No 320
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.56 E-value=0.004 Score=55.63 Aligned_cols=66 Identities=21% Similarity=0.361 Sum_probs=40.6
Q ss_pred CeEEEEccchhhHHHHHHHHhC------C--Ce-EEEEeCChhH-------HHHH---HhCC-C--CCcC--CHHHHh-h
Q 021213 6 QSVGFIGLGNMGFRMASNLMKA------G--YK-MAVHDVNCNV-------MKMF---SDMG-V--PTKE--TPFEVA-E 60 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~------g--~~-V~~~~r~~~~-------~~~l---~~~g-~--~~~~--~~~~~~-~ 60 (316)
|||+|+|+|++|+.+++.|.+. | .+ |.++|++... .+.+ .+.| + .... +..+++ .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 5899999999999999999873 3 34 3345665321 1111 1212 1 1112 455553 3
Q ss_pred cCCEEEEeCCC
Q 021213 61 ASDVVITMLPS 71 (316)
Q Consensus 61 ~adivi~~vp~ 71 (316)
++|++|-|+|+
T Consensus 81 ~~DVvVE~t~~ 91 (326)
T PRK06392 81 KPDVIVDVTPA 91 (326)
T ss_pred CCCEEEECCCC
Confidence 68999999975
No 321
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=96.55 E-value=0.0096 Score=51.20 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=34.9
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHH
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 44 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 44 (316)
+|+|.|+|+ |.+|..++..|++.||+|++..|++++....
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTS 57 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 478999995 9999999999999999999999988775443
No 322
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=96.55 E-value=0.0087 Score=53.38 Aligned_cols=66 Identities=24% Similarity=0.390 Sum_probs=48.0
Q ss_pred EEEEccchhhHHHHHHHHhC-CCeEE-EEeCChhHHHHHHh-C------------------CCCCcCCHHHHhhcCCEEE
Q 021213 8 VGFIGLGNMGFRMASNLMKA-GYKMA-VHDVNCNVMKMFSD-M------------------GVPTKETPFEVAEASDVVI 66 (316)
Q Consensus 8 IgiiG~G~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~l~~-~------------------g~~~~~~~~~~~~~adivi 66 (316)
|||+|+|++|..+++.+.+. +.+|. +.|.+++....+.. . ++....++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 68999999999999998754 45655 45666665444432 1 2333557889999999999
Q ss_pred EeCCCCh
Q 021213 67 TMLPSSS 73 (316)
Q Consensus 67 ~~vp~~~ 73 (316)
.|+|...
T Consensus 81 e~Tp~~~ 87 (333)
T TIGR01546 81 DATPGGI 87 (333)
T ss_pred ECCCCCC
Confidence 9999754
No 323
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=96.49 E-value=0.004 Score=50.53 Aligned_cols=66 Identities=21% Similarity=0.424 Sum_probs=44.9
Q ss_pred eEEEEccchhhHHHHH--HHHhC----CCeEEEEeCChhHHHHHH--------hCC----CCCcCCHHHHhhcCCEEEEe
Q 021213 7 SVGFIGLGNMGFRMAS--NLMKA----GYKMAVHDVNCNVMKMFS--------DMG----VPTKETPFEVAEASDVVITM 68 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~--~l~~~----g~~V~~~~r~~~~~~~l~--------~~g----~~~~~~~~~~~~~adivi~~ 68 (316)
||+|||.|..-.+.-- -+... +.+|.++|+++++++... +.| +..++|..++++++|+||.+
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~ 80 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQ 80 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE-
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEE
Confidence 7999999998766332 23332 248999999999865432 233 44578999999999999998
Q ss_pred CCCC
Q 021213 69 LPSS 72 (316)
Q Consensus 69 vp~~ 72 (316)
..-.
T Consensus 81 irvG 84 (183)
T PF02056_consen 81 IRVG 84 (183)
T ss_dssp --TT
T ss_pred eeec
Confidence 7554
No 324
>PRK05993 short chain dehydrogenase; Provisional
Probab=96.47 E-value=0.0094 Score=52.04 Aligned_cols=44 Identities=14% Similarity=0.177 Sum_probs=37.7
Q ss_pred CCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC
Q 021213 4 FDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM 47 (316)
Q Consensus 4 ~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~ 47 (316)
|+++|-|.|+ |.+|..+++.|++.|++|++.+|++++.+.+.+.
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~ 47 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAE 47 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC
Confidence 3457888887 9999999999999999999999998887776654
No 325
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.47 E-value=0.02 Score=49.82 Aligned_cols=75 Identities=16% Similarity=0.211 Sum_probs=56.6
Q ss_pred CCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||-+. +|.+++..|.+.+..|+++.... .++.+..++||+||.+++.+.- +..
T Consensus 157 Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~~~~-i~~----- 216 (284)
T PRK14170 157 GKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT--------------KDLPQVAKEADILVVATGLAKF-VKK----- 216 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCcCc-cCH-----
Confidence 47899998765 79999999999999999887532 3567778999999999986542 221
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
+.+ .++.++||.+.+.
T Consensus 217 -~~v-----k~GavVIDvGin~ 232 (284)
T PRK14170 217 -DYI-----KPGAIVIDVGMDR 232 (284)
T ss_pred -HHc-----CCCCEEEEccCcc
Confidence 122 2567999988764
No 326
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.46 E-value=0.012 Score=58.03 Aligned_cols=68 Identities=26% Similarity=0.348 Sum_probs=50.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh---------------------HHHHHHhCCCCCc--------CCH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN---------------------VMKMFSDMGVPTK--------ETP 55 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~~--------~~~ 55 (316)
.++|.|||.|..|...|..|++.||+|++|++.+. ..+.+.+.|+... -+.
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i~~ 406 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDISL 406 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcCCH
Confidence 46899999999999999999999999999998643 2333445564321 134
Q ss_pred HHHhhcCCEEEEeCCCC
Q 021213 56 FEVAEASDVVITMLPSS 72 (316)
Q Consensus 56 ~~~~~~adivi~~vp~~ 72 (316)
.+.....|.||+++...
T Consensus 407 ~~~~~~~DavilAtGa~ 423 (654)
T PRK12769 407 ESLLEDYDAVFVGVGTY 423 (654)
T ss_pred HHHHhcCCEEEEeCCCC
Confidence 45556789999988653
No 327
>PRK08163 salicylate hydroxylase; Provisional
Probab=96.45 E-value=0.0041 Score=57.27 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=34.3
Q ss_pred CCCCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 1 MLFFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
|+ ++++|.|||.|-.|.++|..|.+.|++|++++|++.
T Consensus 1 ~~-~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 1 MT-KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CC-CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 44 568999999999999999999999999999998754
No 328
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.43 E-value=0.018 Score=52.22 Aligned_cols=74 Identities=20% Similarity=0.256 Sum_probs=52.1
Q ss_pred eEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHh-CCCCCcCCHH---------HHh--hcCCEEEEeCCCCh
Q 021213 7 SVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSD-MGVPTKETPF---------EVA--EASDVVITMLPSSS 73 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~-~g~~~~~~~~---------~~~--~~adivi~~vp~~~ 73 (316)
++.|+|+|.+|...+..+...| .+|++.|+++++++..++ .+.....+.. +.. ..+|++|.|+....
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~ 250 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPP 250 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCHH
Confidence 6999999999999887777778 578888999999988877 4443222221 111 24888888887654
Q ss_pred hhHHHHhc
Q 021213 74 HQVLDVYN 81 (316)
Q Consensus 74 ~~~~~v~~ 81 (316)
. +...+.
T Consensus 251 ~-~~~ai~ 257 (350)
T COG1063 251 A-LDQALE 257 (350)
T ss_pred H-HHHHHH
Confidence 4 444443
No 329
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=96.43 E-value=0.021 Score=46.61 Aligned_cols=89 Identities=22% Similarity=0.328 Sum_probs=58.8
Q ss_pred CCCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCC-C--CCc--CC----HHHHhhcCCEEEEeCCCCh
Q 021213 4 FDQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMG-V--PTK--ET----PFEVAEASDVVITMLPSSS 73 (316)
Q Consensus 4 ~~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g-~--~~~--~~----~~~~~~~adivi~~vp~~~ 73 (316)
..++|.|||-+. +|.+++..|.+.|..|+++|.+.-.. +...+ . ..+ .+ ..+.+++||+||.+++.+.
T Consensus 61 ~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~ 138 (197)
T cd01079 61 YGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV--FTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPN 138 (197)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc--cccccccccccccccchhhHHHHHhhhCCEEEEccCCCC
Confidence 347899998765 69999999999999999997543211 11000 0 001 12 6688899999999998653
Q ss_pred hhHHHHhcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 74 HQVLDVYNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
+. +. .+.+ .++.++||.+...
T Consensus 139 --~~--i~--~d~i-----k~GavVIDVGi~~ 159 (197)
T cd01079 139 --YK--VP--TELL-----KDGAICINFASIK 159 (197)
T ss_pred --Cc--cC--HHHc-----CCCcEEEEcCCCc
Confidence 10 11 1122 2578999998764
No 330
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.42 E-value=0.0046 Score=55.51 Aligned_cols=93 Identities=15% Similarity=0.171 Sum_probs=56.0
Q ss_pred CCCCCCeEEEEcc-chhhHHHHHHHHh-CCCe---EEEEeCChhHHH--HHHhCCCCCc-CCHHHHhhcCCEEEEeCCCC
Q 021213 1 MLFFDQSVGFIGL-GNMGFRMASNLMK-AGYK---MAVHDVNCNVMK--MFSDMGVPTK-ETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 1 ~~~~~~~IgiiG~-G~mG~~la~~l~~-~g~~---V~~~~r~~~~~~--~l~~~g~~~~-~~~~~~~~~adivi~~vp~~ 72 (316)
|.-..+||+|||+ |..|..+.+.|.+ ..++ +..+......-+ .+........ .++.+ ++++|++|+|+|..
T Consensus 1 ~~~~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~~~ 79 (347)
T PRK06728 1 MSEKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAGGE 79 (347)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCChH
Confidence 3344579999987 9999999999995 5566 555543222111 1111111211 23333 47899999999987
Q ss_pred hhhHHHHhcCCCCcccCCCCCCCeEEEEcCCC
Q 021213 73 SHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~ 104 (316)
.. +++.... . ..+..|||.|+.
T Consensus 80 ~s--~~~~~~~---~-----~~G~~VID~Ss~ 101 (347)
T PRK06728 80 VS--RQFVNQA---V-----SSGAIVIDNTSE 101 (347)
T ss_pred HH--HHHHHHH---H-----HCCCEEEECchh
Confidence 53 4544321 1 145688888864
No 331
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.42 E-value=0.017 Score=56.72 Aligned_cols=68 Identities=25% Similarity=0.347 Sum_probs=51.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh---------------------HHHHHHhCCCCCc--------CCH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN---------------------VMKMFSDMGVPTK--------ETP 55 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~~--------~~~ 55 (316)
.++|.|||.|..|...|..|++.||+|++|++.+. ..+.+.+.|+... .+.
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~ 389 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDITF 389 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcCCH
Confidence 47899999999999999999999999999998753 3344555564321 234
Q ss_pred HHHhhcCCEEEEeCCCC
Q 021213 56 FEVAEASDVVITMLPSS 72 (316)
Q Consensus 56 ~~~~~~adivi~~vp~~ 72 (316)
.++....|.||+++...
T Consensus 390 ~~l~~~~DaV~latGa~ 406 (639)
T PRK12809 390 SDLTSEYDAVFIGVGTY 406 (639)
T ss_pred HHHHhcCCEEEEeCCCC
Confidence 45556789999988654
No 332
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.41 E-value=0.045 Score=51.24 Aligned_cols=114 Identities=14% Similarity=0.168 Sum_probs=65.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhH--HHHHHhCCCCCcC--CHHHHhhcCCEEEEe--CCCChhhHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV--MKMFSDMGVPTKE--TPFEVAEASDVVITM--LPSSSHQVLD 78 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~--~~~l~~~g~~~~~--~~~~~~~~adivi~~--vp~~~~~~~~ 78 (316)
.++|.|+|.|..|.+.++.|.+.|++|+++|..+.. .+.+. .|+.... ...+.+++.|+||.. +|.+...+.+
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~-~g~~~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~ 84 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLP-ENVERHTGSLNDEWLLAADLIVASPGIALAHPSLSA 84 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHh-cCCEEEeCCCCHHHhcCCCEEEECCCCCCCCHHHHH
Confidence 467999999999999999999999999999975432 23343 3654422 233445678877773 4433221333
Q ss_pred HhcCCCCcccC-----CCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 79 VYNGPNGLLQG-----GNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 79 v~~~~~~~~~~-----~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
....-.+++.. .......+-|--|.++..++.-+...+...
T Consensus 85 a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~ 130 (438)
T PRK03806 85 AADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAA 130 (438)
T ss_pred HHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 32211111110 001122333444555566777777777654
No 333
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=96.41 E-value=0.0073 Score=45.42 Aligned_cols=82 Identities=21% Similarity=0.244 Sum_probs=48.7
Q ss_pred ccchhhHHHHHHHHhC----CCeE-EEEeCC--hhHHHHHHhCCCCCcCCHHHHhh--cCCEEEEeCCCChhhHHHHhcC
Q 021213 12 GLGNMGFRMASNLMKA----GYKM-AVHDVN--CNVMKMFSDMGVPTKETPFEVAE--ASDVVITMLPSSSHQVLDVYNG 82 (316)
Q Consensus 12 G~G~mG~~la~~l~~~----g~~V-~~~~r~--~~~~~~l~~~g~~~~~~~~~~~~--~adivi~~vp~~~~~~~~v~~~ 82 (316)
|+|.+|+.++..|.+. +.+| .+++|+ .+........+.....+.+++++ ..|+||-|.+... +.+.+.
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~--~~~~~~- 77 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEA--VAEYYE- 77 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHH--HHHHHH-
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchH--HHHHHH-
Confidence 8999999999999987 3454 466887 11111112234567788999888 8999999965433 555443
Q ss_pred CCCcccCCCCCCCeEEEEcCC
Q 021213 83 PNGLLQGGNSVRPQLLIDSST 103 (316)
Q Consensus 83 ~~~~~~~~~~~~~~~vi~~st 103 (316)
..++ .+.-+|..+.
T Consensus 78 --~~L~-----~G~~VVt~nk 91 (117)
T PF03447_consen 78 --KALE-----RGKHVVTANK 91 (117)
T ss_dssp --HHHH-----TTCEEEES-H
T ss_pred --HHHH-----CCCeEEEECH
Confidence 2333 4445655544
No 334
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.41 E-value=0.0096 Score=56.44 Aligned_cols=65 Identities=25% Similarity=0.368 Sum_probs=47.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh-----HHHHHHhCCCCCcCC-HHHHhhcCCEEEEeC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN-----VMKMFSDMGVPTKET-PFEVAEASDVVITML 69 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~-----~~~~l~~~g~~~~~~-~~~~~~~adivi~~v 69 (316)
.++|.|||.|..|..+|..|.+.|++|+++|+++. ..+.+.+.|+..... ..+....+|+||++.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~ 86 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSP 86 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECC
Confidence 46899999999999999999999999999996542 224466667654321 111345689999864
No 335
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.40 E-value=0.0099 Score=52.70 Aligned_cols=69 Identities=22% Similarity=0.292 Sum_probs=41.5
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCC--------CeEEE---EeCChhHHHHHHhCC-CCCcCCH-----HHHh--hcCC
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAG--------YKMAV---HDVNCNVMKMFSDMG-VPTKETP-----FEVA--EASD 63 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g--------~~V~~---~~r~~~~~~~l~~~g-~~~~~~~-----~~~~--~~ad 63 (316)
|+.++|+|+|+|.+|+.+++.|.+++ .++.+ .+|+......+.-.+ ....++. .+.+ .+.|
T Consensus 1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (333)
T COG0460 1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDID 80 (333)
T ss_pred CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCC
Confidence 35679999999999999999998763 34333 355544332111111 1222333 3443 3567
Q ss_pred EEEEeCCC
Q 021213 64 VVITMLPS 71 (316)
Q Consensus 64 ivi~~vp~ 71 (316)
+|+-+++.
T Consensus 81 vvve~~~~ 88 (333)
T COG0460 81 VVVELVGG 88 (333)
T ss_pred EEEecCcc
Confidence 88888776
No 336
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=96.38 E-value=0.0064 Score=44.90 Aligned_cols=82 Identities=17% Similarity=0.256 Sum_probs=53.8
Q ss_pred hhHHHHHHHHhCCCeEEEEeCChhHHHHHH---hCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHH-hcCCCCcccCCC
Q 021213 16 MGFRMASNLMKAGYKMAVHDVNCNVMKMFS---DMGVPTKETPFEVAEASDVVITMLPSSSHQVLDV-YNGPNGLLQGGN 91 (316)
Q Consensus 16 mG~~la~~l~~~g~~V~~~~r~~~~~~~l~---~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v-~~~~~~~~~~~~ 91 (316)
-+..+++.|.+.|.+|.+||+.-....... ..++...+++.++++.+|.||++++.+. .+.+ ...+...+
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~--f~~l~~~~~~~~~---- 91 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDE--FRELDWEEIAKLM---- 91 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GG--GGCCGHHHHHHHS----
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHH--HhccCHHHHHHhc----
Confidence 356788999999999999999766554443 2467788899999999999999997654 3331 11111112
Q ss_pred CCCCeEEEEcCCC
Q 021213 92 SVRPQLLIDSSTI 104 (316)
Q Consensus 92 ~~~~~~vi~~st~ 104 (316)
.++.+|+|+-..
T Consensus 92 -~~~~~iiD~~~~ 103 (106)
T PF03720_consen 92 -RKPPVIIDGRNI 103 (106)
T ss_dssp -CSSEEEEESSST
T ss_pred -CCCCEEEECccc
Confidence 245688887654
No 337
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=96.37 E-value=0.037 Score=42.99 Aligned_cols=75 Identities=17% Similarity=0.167 Sum_probs=51.6
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.++|.|+|-+ ..|.+++..|.+.|..|+.++++. .+.++.+++||+|+.+++...- ++.
T Consensus 28 gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t--------------~~l~~~v~~ADIVvsAtg~~~~-i~~----- 87 (140)
T cd05212 28 GKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT--------------IQLQSKVHDADVVVVGSPKPEK-VPT----- 87 (140)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCCCCc-cCH-----
Confidence 4677777654 467788888877777887777542 2677788999999999986531 221
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
+.+ .++.+++|.+...
T Consensus 88 -~~i-----kpGa~Vidvg~~~ 103 (140)
T cd05212 88 -EWI-----KPGATVINCSPTK 103 (140)
T ss_pred -HHc-----CCCCEEEEcCCCc
Confidence 123 2567888887665
No 338
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=96.36 E-value=0.013 Score=55.86 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=35.0
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
.++|.|.|+ |.+|..+++.|++.|++|++++|+.++.+.+.
T Consensus 80 gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~ 121 (576)
T PLN03209 80 EDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLV 121 (576)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 456888875 99999999999999999999999988776543
No 339
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=96.36 E-value=0.008 Score=55.75 Aligned_cols=66 Identities=17% Similarity=0.262 Sum_probs=48.5
Q ss_pred CeEEEEccchh-hHHHHHHHHhCC-----CeEEEEeCChhHHHHHH--------hCC----CCCcCCHHHHhhcCCEEEE
Q 021213 6 QSVGFIGLGNM-GFRMASNLMKAG-----YKMAVHDVNCNVMKMFS--------DMG----VPTKETPFEVAEASDVVIT 67 (316)
Q Consensus 6 ~~IgiiG~G~m-G~~la~~l~~~g-----~~V~~~~r~~~~~~~l~--------~~g----~~~~~~~~~~~~~adivi~ 67 (316)
|||+|||.|.. .-.+...|++.. .+|.++|+++++.+... +.| +..++|.++++++||+||.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfVi~ 80 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVIN 80 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEEE
Confidence 69999999984 334555555433 58999999998765432 223 4567899999999999999
Q ss_pred eCCC
Q 021213 68 MLPS 71 (316)
Q Consensus 68 ~vp~ 71 (316)
..--
T Consensus 81 ~irv 84 (425)
T cd05197 81 QFRV 84 (425)
T ss_pred eeec
Confidence 7643
No 340
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.36 E-value=0.024 Score=53.34 Aligned_cols=62 Identities=24% Similarity=0.332 Sum_probs=45.6
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCChhH-H----HHHHhCCCCCcC--CHH-----HHhhcCCEEEEe
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV-M----KMFSDMGVPTKE--TPF-----EVAEASDVVITM 68 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~-~----~~l~~~g~~~~~--~~~-----~~~~~adivi~~ 68 (316)
||.|||+|..|.+.|+.|.+.|++|+++|+++.. . +.+.+.|++... ... +..+++|.||..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s 75 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVS 75 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEEC
Confidence 6899999999999999999999999999976432 2 235566654421 111 346678998884
No 341
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=96.35 E-value=0.014 Score=55.95 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=48.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-CCCC--cCCHHHH-hhcCCEEEEeCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVPT--KETPFEV-AEASDVVITMLPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~~--~~~~~~~-~~~adivi~~vp~~ 72 (316)
.+++.|+|+|.+|.+++..|++.|.+|++++|+.++.+.+.+. +... ..+..+. ...+|+||-|+|-.
T Consensus 379 ~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vG 450 (529)
T PLN02520 379 GKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVG 450 (529)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCC
Confidence 4678999999999999999999999999999999988877653 2111 1122221 23467777677654
No 342
>PRK08328 hypothetical protein; Provisional
Probab=96.35 E-value=0.014 Score=49.53 Aligned_cols=41 Identities=22% Similarity=0.364 Sum_probs=34.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~ 45 (316)
..+|.|+|+|..|+.++..|++.| .+++++|.+.-....+.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~ 68 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLN 68 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhc
Confidence 468999999999999999999999 47999998755444443
No 343
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.33 E-value=0.0052 Score=55.30 Aligned_cols=89 Identities=16% Similarity=0.138 Sum_probs=55.6
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCCCeE---EEEeCChhHHHHHHhCC--CCCcCCHHHHhhcCCEEEEeCCCChhhHHHH
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAGYKM---AVHDVNCNVMKMFSDMG--VPTKETPFEVAEASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g~~V---~~~~r~~~~~~~l~~~g--~~~~~~~~~~~~~adivi~~vp~~~~~~~~v 79 (316)
+||+|+| .|..|..+.+.|.+.+|++ ....++.+.-+.+.-.+ +...+...+.++++|+||+|+|.... +++
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s--~~~ 79 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVS--KKY 79 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHH--HHH
Confidence 6899996 5999999999999988763 55555433322222112 12211112334789999999998753 554
Q ss_pred hcCCCCcccCCCCCCCeEEEEcCCC
Q 021213 80 YNGPNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vi~~st~ 104 (316)
...+ ++ .+..|||.|+.
T Consensus 80 ~~~~---~~-----~G~~VIDlS~~ 96 (334)
T PRK14874 80 APKA---AA-----AGAVVIDNSSA 96 (334)
T ss_pred HHHH---Hh-----CCCEEEECCch
Confidence 4322 21 34588888864
No 344
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=96.31 E-value=0.011 Score=53.41 Aligned_cols=63 Identities=11% Similarity=0.253 Sum_probs=44.4
Q ss_pred CeEEEEcc-chhhHHHHHHHHhC-CCeEEEEeCChhHHHHHHh-CCCC-----CcCC---HHHHhhcCCEEEEe
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSD-MGVP-----TKET---PFEVAEASDVVITM 68 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~-~g~~-----~~~~---~~~~~~~adivi~~ 68 (316)
|+|.|.|+ |.+|+.++..|.+. ||+|++++|+.++...+.. .++. ...+ ..++++++|+||=+
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~ 75 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPL 75 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEEC
Confidence 58999996 99999999999986 6999999997765544432 1211 1112 23456789998853
No 345
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.30 E-value=0.0056 Score=56.25 Aligned_cols=39 Identities=26% Similarity=0.251 Sum_probs=33.8
Q ss_pred CCCCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 1 MLFFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
|++...+|.|||.|..|.++|..|+++|++|+++++++.
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 444446799999999999999999999999999998753
No 346
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.30 E-value=0.027 Score=49.30 Aligned_cols=75 Identities=9% Similarity=0.163 Sum_probs=56.2
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.++|.|||-+ .+|.+++..|.+.|..|+++.... .++.+..++||+||++++.+.- +..
T Consensus 158 Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvIsAvGkp~~-i~~----- 217 (297)
T PRK14186 158 GKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT--------------QDLASITREADILVAAAGRPNL-IGA----- 217 (297)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcCc-cCH-----
Confidence 4789999865 579999999999999999986532 3567778899999999986532 221
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 218 -~~i-----k~gavVIDvGin~ 233 (297)
T PRK14186 218 -EMV-----KPGAVVVDVGIHR 233 (297)
T ss_pred -HHc-----CCCCEEEEecccc
Confidence 122 2567999988654
No 347
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.29 E-value=0.012 Score=50.47 Aligned_cols=35 Identities=26% Similarity=0.427 Sum_probs=30.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~ 39 (316)
+.||.|||+|..|+.++..|++.|. +++++|.+.=
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v 67 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV 67 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 4689999999999999999999994 7999987643
No 348
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=96.29 E-value=0.0074 Score=54.37 Aligned_cols=91 Identities=14% Similarity=0.165 Sum_probs=54.7
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCCCe---EEEE--eCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHH
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAGYK---MAVH--DVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVL 77 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g~~---V~~~--~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~ 77 (316)
..+||+|+| .|..|..+.+.|.+.+|+ +... .|+..+.-..............+.++++|+||+|+|.... .
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~s--~ 83 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSIS--K 83 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHHH--H
Confidence 358999996 599999999999998874 3333 2332221111111111111122445789999999998753 5
Q ss_pred HHhcCCCCcccCCCCCCCeEEEEcCCC
Q 021213 78 DVYNGPNGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~vi~~st~ 104 (316)
...... . ..+..|||.|+.
T Consensus 84 ~~~~~~---~-----~~g~~VIDlS~~ 102 (344)
T PLN02383 84 KFGPIA---V-----DKGAVVVDNSSA 102 (344)
T ss_pred HHHHHH---H-----hCCCEEEECCch
Confidence 544321 1 245689999864
No 349
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=96.28 E-value=0.0074 Score=53.59 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=45.1
Q ss_pred eEEEEcc-chhhHHHHHHHHhCCC--eEEEEeCChhH--HHHHHhC----CCCC-c-C-CHHHHhhcCCEEEEeCC
Q 021213 7 SVGFIGL-GNMGFRMASNLMKAGY--KMAVHDVNCNV--MKMFSDM----GVPT-K-E-TPFEVAEASDVVITMLP 70 (316)
Q Consensus 7 ~IgiiG~-G~mG~~la~~l~~~g~--~V~~~~r~~~~--~~~l~~~----g~~~-~-~-~~~~~~~~adivi~~vp 70 (316)
||+|||+ |.+|..+|..|...+. ++.++|+++.. +..+.+. .+.. . + ++.+.+++||+||++..
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG 76 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAG 76 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCC
Confidence 7999999 9999999999988875 79999997622 1112221 1111 1 1 23678899999999753
No 350
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.27 E-value=0.029 Score=48.91 Aligned_cols=75 Identities=12% Similarity=0.194 Sum_probs=56.3
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||-+ .+|.+++..|.+.+..|+++.+.. .++.+..++||+||+++..+.- +..
T Consensus 155 Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T--------------~~l~~~~~~ADIvIsAvGkp~~-i~~----- 214 (287)
T PRK14173 155 GKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT--------------QDLPAVTRRADVLVVAVGRPHL-ITP----- 214 (287)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCcCc-cCH-----
Confidence 4789999865 579999999999999999887532 3567778899999999976532 211
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 215 -~~v-----k~GavVIDVGin~ 230 (287)
T PRK14173 215 -EMV-----RPGAVVVDVGINR 230 (287)
T ss_pred -HHc-----CCCCEEEEccCcc
Confidence 223 2677999988654
No 351
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.26 E-value=0.021 Score=53.92 Aligned_cols=68 Identities=25% Similarity=0.344 Sum_probs=49.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh---------------------HHHHHHhCCCCCcC--------CH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN---------------------VMKMFSDMGVPTKE--------TP 55 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~~~--------~~ 55 (316)
.++|.|||.|..|...|..|++.|++|++|++.+. ..+.+.+.|+.... +.
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~ 220 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDISL 220 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCccCH
Confidence 36899999999999999999999999999997642 23445556643211 23
Q ss_pred HHHhhcCCEEEEeCCCC
Q 021213 56 FEVAEASDVVITMLPSS 72 (316)
Q Consensus 56 ~~~~~~adivi~~vp~~ 72 (316)
.+.....|.||+++...
T Consensus 221 ~~~~~~~D~vilAtGa~ 237 (467)
T TIGR01318 221 DDLLEDYDAVFLGVGTY 237 (467)
T ss_pred HHHHhcCCEEEEEeCCC
Confidence 34445688898888654
No 352
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.25 E-value=0.021 Score=52.77 Aligned_cols=107 Identities=12% Similarity=0.093 Sum_probs=61.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHh--hcCCEEEEe--CCCChhhHHH---
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVA--EASDVVITM--LPSSSHQVLD--- 78 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~--~~adivi~~--vp~~~~~~~~--- 78 (316)
|+|.|+|+|.-|.+.|+.|. .|++|+++|..+.... +.+.|+... + .+.. +++|+||.. +|.+...+..
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi~~~-~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~ 76 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGNLLL-P-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKN 76 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCCEEe-c-HHHcCcCCCCEEEECCCCCCCCHHHHHHHH
Confidence 68999999999999999999 9999999996533221 223355442 2 2223 468988774 5544221322
Q ss_pred HhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 79 VYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
++.++ +++.. ..+..+-|--|.++..++.-+...+...
T Consensus 77 i~~~~-e~~~~--~~~~~i~ITGT~GKTTTt~ml~~iL~~~ 114 (401)
T PRK03815 77 LISEY-DYFYD--VMPFSIWISGTNGKTTTTQMTTHLLEDF 114 (401)
T ss_pred HhhHH-HHHHH--hcCCEEEEECCCcHHHHHHHHHHHHHHC
Confidence 22221 11211 1122344444555566666666666653
No 353
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.24 E-value=0.042 Score=51.91 Aligned_cols=68 Identities=18% Similarity=0.122 Sum_probs=47.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh----HHHHHHhCCCCC-cCCHHHHhhcCCEEEEe--CCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN----VMKMFSDMGVPT-KETPFEVAEASDVVITM--LPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~----~~~~l~~~g~~~-~~~~~~~~~~adivi~~--vp~~ 72 (316)
.++|.|+|+|.-|.+.++.|.+.|.+|+++|.++. ....+.+.+... .....+.+.++|+||.. +|.+
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~ 82 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPY 82 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCC
Confidence 46899999999999999999999999999995432 122344432211 11123456789999884 5544
No 354
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=96.23 E-value=0.0035 Score=56.42 Aligned_cols=87 Identities=16% Similarity=0.220 Sum_probs=53.9
Q ss_pred eEEEEc-cchhhHHHHHHHHhCCCeE---EEEeCChhHHHHHHhCCC--CCcCCHHHHhhcCCEEEEeCCCChhhHHHHh
Q 021213 7 SVGFIG-LGNMGFRMASNLMKAGYKM---AVHDVNCNVMKMFSDMGV--PTKETPFEVAEASDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 7 ~IgiiG-~G~mG~~la~~l~~~g~~V---~~~~r~~~~~~~l~~~g~--~~~~~~~~~~~~adivi~~vp~~~~~~~~v~ 80 (316)
||+|+| .|..|..+.+.|.+++|++ ..+.++.+.-+.+.-.|. ...+-..+.++++|++|+|+|.... .+..
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~~s--~~~a 78 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGSVS--KEFA 78 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHHHH--HHHH
Confidence 689998 8999999999999988873 344444332222222221 1111112345789999999998753 4444
Q ss_pred cCCCCcccCCCCCCCeEEEEcCC
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSST 103 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st 103 (316)
.. +++ .+..|||.|+
T Consensus 79 ~~---~~~-----~G~~VID~ss 93 (339)
T TIGR01296 79 PK---AAK-----CGAIVIDNTS 93 (339)
T ss_pred HH---HHH-----CCCEEEECCH
Confidence 32 221 3457888885
No 355
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.22 E-value=0.031 Score=48.57 Aligned_cols=75 Identities=9% Similarity=0.169 Sum_probs=56.0
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.++|.|||-+ .+|.+++..|.+.|..|+++.... .++.+..++||+||++++.+.- +..
T Consensus 156 Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~p~~-i~~----- 215 (282)
T PRK14169 156 GKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT--------------RNLKQLTKEADILVVAVGVPHF-IGA----- 215 (282)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEccCCcCc-cCH-----
Confidence 4789999876 579999999999999999886432 3567778899999999986542 211
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 216 -~~v-----k~GavVIDvGin~ 231 (282)
T PRK14169 216 -DAV-----KPGAVVIDVGISR 231 (282)
T ss_pred -HHc-----CCCcEEEEeeccc
Confidence 123 2567999988654
No 356
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.22 E-value=0.01 Score=41.26 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=30.8
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
||.|||.|..|.-+|..|.+.|.+|+++.+++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 689999999999999999999999999998765
No 357
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.21 E-value=0.014 Score=53.45 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=30.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~ 38 (316)
..+|.|+|+|..|+.++..|++.|. +++++|++.
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~ 169 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDV 169 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 4689999999999999999999996 799999873
No 358
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.21 E-value=0.032 Score=48.51 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=56.4
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||-+ .+|.+++..|.+.+..|+++++.. .++.+..++||+||.++..+.- +..
T Consensus 157 Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T--------------~nl~~~~~~ADIvIsAvGkp~~-i~~----- 216 (282)
T PRK14166 157 GKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGCVNL-LRS----- 216 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCc-cCH-----
Confidence 4789999876 579999999999999999887642 3567778899999999986542 221
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 217 -~~v-----k~GavVIDvGin~ 232 (282)
T PRK14166 217 -DMV-----KEGVIVVDVGINR 232 (282)
T ss_pred -HHc-----CCCCEEEEecccc
Confidence 122 2567999988654
No 359
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=96.21 E-value=0.012 Score=53.70 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=45.5
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCC-------eEEEE--eCChhHHHHH----Hh------CCCCCcCCHHHHhhcCCEE
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGY-------KMAVH--DVNCNVMKMF----SD------MGVPTKETPFEVAEASDVV 65 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~-------~V~~~--~r~~~~~~~l----~~------~g~~~~~~~~~~~~~adiv 65 (316)
-||+|||+ |.+|..+|-.|...+. .+.++ |++.++++.. .+ ..+...++..+.+++||+|
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIV 124 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWA 124 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEE
Confidence 58999999 9999999999998773 24445 7777764322 11 1233345566788999999
Q ss_pred EEeC
Q 021213 66 ITML 69 (316)
Q Consensus 66 i~~v 69 (316)
|++-
T Consensus 125 VitA 128 (387)
T TIGR01757 125 LLIG 128 (387)
T ss_pred EECC
Confidence 9963
No 360
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.20 E-value=0.012 Score=50.40 Aligned_cols=37 Identities=24% Similarity=0.413 Sum_probs=31.7
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVM 41 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~ 41 (316)
..+|.|+|+|.+|+.++..|++.| .+++++|.+.-..
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~ 61 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSL 61 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccc
Confidence 468999999999999999999999 4799998864433
No 361
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=96.19 E-value=0.012 Score=52.74 Aligned_cols=63 Identities=19% Similarity=0.287 Sum_probs=43.8
Q ss_pred eEEEEcc-chhhHHHHHHHHhCCC-------eEEEEeCChhH--HHH----HHh------CCCCCcCCHHHHhhcCCEEE
Q 021213 7 SVGFIGL-GNMGFRMASNLMKAGY-------KMAVHDVNCNV--MKM----FSD------MGVPTKETPFEVAEASDVVI 66 (316)
Q Consensus 7 ~IgiiG~-G~mG~~la~~l~~~g~-------~V~~~~r~~~~--~~~----l~~------~g~~~~~~~~~~~~~adivi 66 (316)
||+|||+ |.+|+.++..|...+. ++.++|++++. ++. +.+ .++...++..+.+++||+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 6999999 9999999999987553 69999995442 111 111 11222335567889999999
Q ss_pred EeC
Q 021213 67 TML 69 (316)
Q Consensus 67 ~~v 69 (316)
++-
T Consensus 81 itA 83 (324)
T TIGR01758 81 LVG 83 (324)
T ss_pred EcC
Confidence 963
No 362
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=96.19 E-value=0.0077 Score=54.37 Aligned_cols=69 Identities=20% Similarity=0.282 Sum_probs=43.8
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCC-CeEEEE-eCChhHHHHHHhC-------CC----C---CcCCHHHHhhcCCEEEEe
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAG-YKMAVH-DVNCNVMKMFSDM-------GV----P---TKETPFEVAEASDVVITM 68 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g-~~V~~~-~r~~~~~~~l~~~-------g~----~---~~~~~~~~~~~adivi~~ 68 (316)
+||+|+|+ |.||..+++.|.++. +++... +++.+.-+.+.+. +. . ......+...++|+|++|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a 80 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA 80 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence 58999995 999999999998876 577655 5443321222110 01 0 001122345789999999
Q ss_pred CCCChh
Q 021213 69 LPSSSH 74 (316)
Q Consensus 69 vp~~~~ 74 (316)
+|....
T Consensus 81 ~p~~~s 86 (341)
T TIGR00978 81 LPSEVA 86 (341)
T ss_pred CCHHHH
Confidence 998753
No 363
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=96.19 E-value=0.0079 Score=53.65 Aligned_cols=64 Identities=13% Similarity=0.119 Sum_probs=46.0
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCC-----C--cCCHHHHhhcCCEEEEeC
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVP-----T--KETPFEVAEASDVVITML 69 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~-----~--~~~~~~~~~~adivi~~v 69 (316)
|+|.|.| +|.+|..++..|++.|++|++.+|+++....+.+.++. . ..+..++++.+|+||-+.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a 72 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVA 72 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEec
Confidence 5799997 59999999999999999999999987654433322321 1 123445566788888764
No 364
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.18 E-value=0.019 Score=53.71 Aligned_cols=67 Identities=24% Similarity=0.312 Sum_probs=53.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh---------------------HHHHHHhCCCCC--------cCCHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN---------------------VMKMFSDMGVPT--------KETPF 56 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~--------~~~~~ 56 (316)
++|+|||.|.-|.+-|..|+++||+|++|++.+. .++.+.+.|+++ .-+.+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it~~ 203 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDITLE 203 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCCHH
Confidence 6899999999999999999999999999988654 244455555221 34778
Q ss_pred HHhhcCCEEEEeCCCC
Q 021213 57 EVAEASDVVITMLPSS 72 (316)
Q Consensus 57 ~~~~~adivi~~vp~~ 72 (316)
++.++-|.|++|+.+.
T Consensus 204 ~L~~e~Dav~l~~G~~ 219 (457)
T COG0493 204 ELLKEYDAVFLATGAG 219 (457)
T ss_pred HHHHhhCEEEEecccc
Confidence 8888889999998653
No 365
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.18 E-value=0.0016 Score=47.26 Aligned_cols=73 Identities=26% Similarity=0.353 Sum_probs=51.0
Q ss_pred CeEEEEccchhhHHHHHHH-HhCCCe-EEEEeCChhHHHHHHhCCCCCcCCHHHHhhc--CCEEEEeCCCChhhHHHHhc
Q 021213 6 QSVGFIGLGNMGFRMASNL-MKAGYK-MAVHDVNCNVMKMFSDMGVPTKETPFEVAEA--SDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l-~~~g~~-V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~--adivi~~vp~~~~~~~~v~~ 81 (316)
.++.|+|+|+.|.+++..+ ...|+. +.++|.++++.-.-. .|+....+.+++.+. .|+.++|+|... .+++..
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i-~gipV~~~~~~l~~~~~i~iaii~VP~~~--a~~~~~ 80 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI-GGIPVYGSMDELEEFIEIDIAIITVPAEA--AQEVAD 80 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE-TTEEEESSHHHHHHHCTTSEEEEES-HHH--HHHHHH
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE-CCEEeeccHHHhhhhhCCCEEEEEcCHHH--HHHHHH
Confidence 5799999999999987543 445665 557798888653111 255566678887766 999999999765 455544
No 366
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.17 E-value=0.0061 Score=56.72 Aligned_cols=38 Identities=24% Similarity=0.506 Sum_probs=34.2
Q ss_pred CCCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 2 LFFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 2 ~~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
+++.++++|||+|.-|.+.|++|.+.|++|+++.|+..
T Consensus 3 ~~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~ 40 (448)
T KOG1399|consen 3 MMMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD 40 (448)
T ss_pred cCCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence 35568999999999999999999999999999988754
No 367
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=96.15 E-value=0.036 Score=48.60 Aligned_cols=75 Identities=19% Similarity=0.255 Sum_probs=56.5
Q ss_pred CCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.++|.|||-+. +|.+++..|.+.|..|++++.. +.++++.+++||+||.++..+.- +..
T Consensus 167 Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~--------------T~nl~~~~~~ADIvv~AvGk~~~-i~~----- 226 (299)
T PLN02516 167 GKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR--------------TPDPESIVREADIVIAAAGQAMM-IKG----- 226 (299)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCc-cCH-----
Confidence 47899998765 7999999999999999999753 23577888999999999975432 211
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
+.+ .++.++||.+...
T Consensus 227 -~~v-----k~gavVIDvGin~ 242 (299)
T PLN02516 227 -DWI-----KPGAAVIDVGTNA 242 (299)
T ss_pred -HHc-----CCCCEEEEeeccc
Confidence 122 2567999988654
No 368
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=96.14 E-value=0.011 Score=52.79 Aligned_cols=67 Identities=25% Similarity=0.345 Sum_probs=48.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHH-HhCCCCCcC----CHHHHhhcCCEEE---EeCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF-SDMGVPTKE----TPFEVAEASDVVI---TMLPSS 72 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l-~~~g~~~~~----~~~~~~~~adivi---~~vp~~ 72 (316)
++|||||-|..|.-|+..-.+-|++|.+.|.+++.-... .+..+.... .+.++++.||+|= .-+|..
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V~~~ 76 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENVPAE 76 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEeeccCCHH
Confidence 689999999999999999999999999999887653332 222233222 2456778999983 356644
No 369
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=96.13 E-value=0.028 Score=51.26 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=30.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVN 37 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~ 37 (316)
..+|.|||+|.+|+.++..|++.| .+++++|.+
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 468999999999999999999999 489999886
No 370
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.13 E-value=0.031 Score=48.56 Aligned_cols=75 Identities=11% Similarity=0.126 Sum_probs=55.7
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.++|.|||-+ .+|.+++..|.+.|..|++++... .++.+..++||+||.+++.+.- +..
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T--------------~dl~~~~k~ADIvIsAvGkp~~-i~~----- 217 (282)
T PRK14180 158 GAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVGKPNF-ITA----- 217 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHhhhcCEEEEccCCcCc-CCH-----
Confidence 4689999865 579999999999999999987532 3566668899999999986542 211
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 218 -~~v-----k~gavVIDvGin~ 233 (282)
T PRK14180 218 -DMV-----KEGAVVIDVGINH 233 (282)
T ss_pred -HHc-----CCCcEEEEecccc
Confidence 122 2567999988654
No 371
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=96.13 E-value=0.01 Score=52.47 Aligned_cols=60 Identities=20% Similarity=0.344 Sum_probs=44.2
Q ss_pred EEccchhhHHHHHHHHhCCC--eEEEEeCChhHHHH----HHhC------CCCCcCCHHHHhhcCCEEEEeC
Q 021213 10 FIGLGNMGFRMASNLMKAGY--KMAVHDVNCNVMKM----FSDM------GVPTKETPFEVAEASDVVITML 69 (316)
Q Consensus 10 iiG~G~mG~~la~~l~~~g~--~V~~~~r~~~~~~~----l~~~------g~~~~~~~~~~~~~adivi~~v 69 (316)
|||+|.+|..+|..|+..+. ++.++|++.++++. +... ......+..+.+++||+||++.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVita 72 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITA 72 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECC
Confidence 69999999999999988774 79999998765432 2221 1233344567789999999964
No 372
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=96.11 E-value=0.037 Score=48.58 Aligned_cols=105 Identities=17% Similarity=0.177 Sum_probs=67.0
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhH-HHHHHhCCCCCcCCHHHHhhc--CCEEEEeCCCChhhHHHHh
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEA--SDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~--adivi~~vp~~~~~~~~v~ 80 (316)
+.||.|.|. |.+|..+.++|.+.|++ .+|-.||.. .+.+ .|+....+..++.+. .|+.++++|... +.+++
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~v--~G~~~y~sv~dlp~~~~~DlAvi~vp~~~--v~~~l 82 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTTV--LGLPVFNTVAEAVEATGANASVIYVPPPF--AADAI 82 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCeE--eCeeccCCHHHHhhccCCCEEEEEcCHHH--HHHHH
Confidence 368999998 77999999999999987 555444431 1111 377888899998886 899999999765 55655
Q ss_pred cCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhch
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNCI 120 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~~ 120 (316)
++. .+. .-+..+|-++.......+++.+...+.+
T Consensus 83 ~e~---~~~---gvk~avI~s~Gf~~~~~~~l~~~a~~~g 116 (291)
T PRK05678 83 LEA---IDA---GIDLIVCITEGIPVLDMLEVKAYLERKK 116 (291)
T ss_pred HHH---HHC---CCCEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 443 221 0122444444433332346666665543
No 373
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.10 E-value=0.04 Score=47.82 Aligned_cols=75 Identities=16% Similarity=0.247 Sum_probs=56.2
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||-+ .+|.+++..|.+.|..|++++... .++.+..++||+||.+++.+.- +..
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T--------------~~l~~~~~~ADIvIsAvGkp~~-i~~----- 217 (278)
T PRK14172 158 GKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT--------------KNLKEVCKKADILVVAIGRPKF-IDE----- 217 (278)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCc-cCH-----
Confidence 4789999865 579999999999999999997532 3567778899999999986542 211
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
+.+ .++.++||.+.+.
T Consensus 218 -~~i-----k~gavVIDvGin~ 233 (278)
T PRK14172 218 -EYV-----KEGAIVIDVGTSS 233 (278)
T ss_pred -HHc-----CCCcEEEEeeccc
Confidence 122 2567999987554
No 374
>PRK07236 hypothetical protein; Provisional
Probab=96.09 E-value=0.0083 Score=55.12 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=33.5
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
|+.++|.|||.|..|.++|..|++.|++|+++++.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4457999999999999999999999999999998753
No 375
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.09 E-value=0.043 Score=47.75 Aligned_cols=75 Identities=11% Similarity=0.181 Sum_probs=56.4
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||-+ .+|.+++..|.+.|..|++++... .++.+..++||+||.+++.+.- +..
T Consensus 159 Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T--------------~~l~~~~~~ADIvIsAvGk~~~-i~~----- 218 (284)
T PRK14177 159 GKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT--------------QNLPSIVRQADIIVGAVGKPEF-IKA----- 218 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEeCCCcCc-cCH-----
Confidence 4689999865 579999999999999999988532 3567778899999999986542 111
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 219 -~~i-----k~gavVIDvGin~ 234 (284)
T PRK14177 219 -DWI-----SEGAVLLDAGYNP 234 (284)
T ss_pred -HHc-----CCCCEEEEecCcc
Confidence 123 2667999998754
No 376
>PRK08223 hypothetical protein; Validated
Probab=96.08 E-value=0.02 Score=49.97 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=30.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~ 39 (316)
+.+|.|||+|.+|+.++..|+++| .+++++|.+.=
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V 62 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF 62 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 468999999999999999999999 47999987643
No 377
>PRK06182 short chain dehydrogenase; Validated
Probab=96.07 E-value=0.027 Score=48.94 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=35.8
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
.++|.|.|+ |.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~ 45 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS 45 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 467888885 899999999999999999999999887766543
No 378
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.07 E-value=0.035 Score=48.40 Aligned_cols=75 Identities=15% Similarity=0.239 Sum_probs=55.7
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||-+ .+|.+++..|.+.+..|++++... .++.+..++||+||.++..+.- +..
T Consensus 159 GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T--------------~~L~~~~~~ADIvV~AvGkp~~-i~~----- 218 (288)
T PRK14171 159 GKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT--------------HNLSSITSKADIVVAAIGSPLK-LTA----- 218 (288)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCCCc-cCH-----
Confidence 4789999876 479999999999999999887432 3567778899999999976532 222
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 219 -~~v-----k~GavVIDvGin~ 234 (288)
T PRK14171 219 -EYF-----NPESIVIDVGINR 234 (288)
T ss_pred -HHc-----CCCCEEEEeeccc
Confidence 122 2567999988653
No 379
>PRK06153 hypothetical protein; Provisional
Probab=96.03 E-value=0.027 Score=51.00 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=29.8
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVN 37 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~ 37 (316)
..+|+|||+|..|+.++..|++.|. +++++|.+
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 3689999999999999999999995 79998875
No 380
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.01 E-value=0.024 Score=57.30 Aligned_cols=66 Identities=23% Similarity=0.313 Sum_probs=53.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh---------------------HHHHHHhCCCCCc--------CCHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN---------------------VMKMFSDMGVPTK--------ETPF 56 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~~--------~~~~ 56 (316)
.+|+|||.|.-|.+-|..|-+.||.|++|.|+.. +++.+.+.|+.+. .+.+
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~vs~d 1865 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKHVSLD 1865 (2142)
T ss_pred cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccccccHH
Confidence 6899999999999999999999999999998743 2444555665433 4678
Q ss_pred HHhhcCCEEEEeCCC
Q 021213 57 EVAEASDVVITMLPS 71 (316)
Q Consensus 57 ~~~~~adivi~~vp~ 71 (316)
++.+.-|.|++|+.+
T Consensus 1866 ~l~~~~daiv~a~gs 1880 (2142)
T KOG0399|consen 1866 ELKKENDAIVLATGS 1880 (2142)
T ss_pred HHhhccCeEEEEeCC
Confidence 888999999998744
No 381
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.00 E-value=0.045 Score=47.86 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=56.0
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.++|.|||-+ .+|.+++..|.+.+..|++++... .++.+..++||+||.+++.+.- +..
T Consensus 160 Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T--------------~~l~~~~~~ADIvVsAvGkp~~-i~~----- 219 (294)
T PRK14187 160 GSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT--------------RDLADYCSKADILVAAVGIPNF-VKY----- 219 (294)
T ss_pred CCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcCc-cCH-----
Confidence 4789999876 479999999999999999988632 3567778999999999986542 221
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 220 -~~i-----k~gaiVIDVGin~ 235 (294)
T PRK14187 220 -SWI-----KKGAIVIDVGINS 235 (294)
T ss_pred -HHc-----CCCCEEEEecccc
Confidence 122 2567999988654
No 382
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=95.99 E-value=0.1 Score=48.30 Aligned_cols=114 Identities=15% Similarity=0.271 Sum_probs=73.0
Q ss_pred CeEEEEccchhh-HHHHHHHHhCCCeEEEEeCChhH-HHHHHhCCCCCcC--CHHHHhhcCCEEEE--eCCCChhhHHHH
Q 021213 6 QSVGFIGLGNMG-FRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKE--TPFEVAEASDVVIT--MLPSSSHQVLDV 79 (316)
Q Consensus 6 ~~IgiiG~G~mG-~~la~~l~~~g~~V~~~~r~~~~-~~~l~~~g~~~~~--~~~~~~~~adivi~--~vp~~~~~~~~v 79 (316)
.+|-|||-|-.| +++|..|.+.||+|.+.|.+... .+.|.+.|+.... +++. +.+++.||. +.+.+...+..+
T Consensus 8 ~~iHfIGIgG~GMsglA~iL~~~G~~VsGSD~~~~~~t~~L~~~G~~i~~gh~~~n-i~~~~~VV~s~Ai~~~NpEi~~A 86 (459)
T COG0773 8 PKIHFIGIGGIGMSGLAEILLNLGYKVSGSDLAESPMTQRLEALGIEIFIGHDAEN-ILDADVVVVSNAIKEDNPEIVAA 86 (459)
T ss_pred ceEEEEeeccccHHHHHHHHHhCCCceECccccccHHHHHHHHCCCeEeCCCCHHH-cCCCceEEEecccCCCCHHHHHH
Confidence 359999999999 88999999999999999976554 5778888876543 3333 446666666 455543225555
Q ss_pred hcCCCCcccCCC------CCCCeEEEEcCCCCHHHHHHHHHHHhhch
Q 021213 80 YNGPNGLLQGGN------SVRPQLLIDSSTIDPQTSRNISAAVSNCI 120 (316)
Q Consensus 80 ~~~~~~~~~~~~------~~~~~~vi~~st~~~~~~~~l~~~~~~~~ 120 (316)
.+.--++++... ..+..+-|.-+-++..|+--++..+...+
T Consensus 87 ~e~~ipi~~r~e~Laelm~~~~~iaVaGTHGKTTTTsmla~vl~~~g 133 (459)
T COG0773 87 LERGIPVISRAEMLAELMRFRTSIAVAGTHGKTTTTSMLAWVLEAAG 133 (459)
T ss_pred HHcCCCeEcHHHHHHHHHhCCeeEEEeCCCCchhHHHHHHHHHHhCC
Confidence 443323332100 11223555556666777777777777653
No 383
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=95.99 E-value=0.017 Score=53.54 Aligned_cols=65 Identities=18% Similarity=0.279 Sum_probs=47.3
Q ss_pred CeEEEEccchhhH-HHHHHHHhC-----CCeEEEEeCC-hhHHHHHH--------hCC----CCCcCCHHHHhhcCCEEE
Q 021213 6 QSVGFIGLGNMGF-RMASNLMKA-----GYKMAVHDVN-CNVMKMFS--------DMG----VPTKETPFEVAEASDVVI 66 (316)
Q Consensus 6 ~~IgiiG~G~mG~-~la~~l~~~-----g~~V~~~~r~-~~~~~~l~--------~~g----~~~~~~~~~~~~~adivi 66 (316)
|||+|||.|..-+ .+...|++. +-+|.++|++ +++++... +.| +..+++..+++++||+||
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadfVi 80 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFVF 80 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEE
Confidence 6999999999754 344555542 2579999999 78754422 123 456789999999999999
Q ss_pred EeCC
Q 021213 67 TMLP 70 (316)
Q Consensus 67 ~~vp 70 (316)
.+..
T Consensus 81 ~~~~ 84 (419)
T cd05296 81 TQIR 84 (419)
T ss_pred EEEe
Confidence 9753
No 384
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=95.97 E-value=0.013 Score=39.47 Aligned_cols=30 Identities=40% Similarity=0.585 Sum_probs=27.2
Q ss_pred EEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 10 FIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 10 iiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
|||.|.-|.+.|..|.+.|++|++++++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999998754
No 385
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.97 E-value=0.024 Score=55.83 Aligned_cols=68 Identities=24% Similarity=0.361 Sum_probs=49.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhH---------------------HHHHHhCCCCCc--------CCH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNV---------------------MKMFSDMGVPTK--------ETP 55 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~---------------------~~~l~~~g~~~~--------~~~ 55 (316)
.++|.|||.|..|...|..|++.||+|+++++++.. .+.+.+.|++.. .+.
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv~~ 272 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDITL 272 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCccCH
Confidence 368999999999999999999999999999976431 344455554321 123
Q ss_pred HHHhhcCCEEEEeCCCC
Q 021213 56 FEVAEASDVVITMLPSS 72 (316)
Q Consensus 56 ~~~~~~adivi~~vp~~ 72 (316)
++.....|.||+++...
T Consensus 273 ~~~~~~~DaVilAtGa~ 289 (652)
T PRK12814 273 EELQKEFDAVLLAVGAQ 289 (652)
T ss_pred HHHHhhcCEEEEEcCCC
Confidence 44445699999988653
No 386
>PRK06180 short chain dehydrogenase; Provisional
Probab=95.97 E-value=0.032 Score=48.70 Aligned_cols=42 Identities=14% Similarity=0.125 Sum_probs=35.8
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
+++|-|.|+ |.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~ 46 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEA 46 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHh
Confidence 456888865 899999999999999999999999887766654
No 387
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=95.96 E-value=0.013 Score=51.35 Aligned_cols=65 Identities=18% Similarity=0.094 Sum_probs=45.0
Q ss_pred eEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCC--CC--cCCHHHHh------hc-CCEEEEeCCC
Q 021213 7 SVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGV--PT--KETPFEVA------EA-SDVVITMLPS 71 (316)
Q Consensus 7 ~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~--~~--~~~~~~~~------~~-adivi~~vp~ 71 (316)
+|.|+|+ |.+|+.++..|.+.||+|.+..|++++.....-..+ .. .++..+++ +. +|.++++.|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~ 77 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP 77 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence 4788877 999999999999999999999999875431100111 11 12334455 45 8999988764
No 388
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=95.95 E-value=0.051 Score=47.57 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=68.9
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhH-HHHHHhCCCCCcCCHHHHhhc--CCEEEEeCCCChhhHHHHh
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNV-MKMFSDMGVPTKETPFEVAEA--SDVVITMLPSSSHQVLDVY 80 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~--adivi~~vp~~~~~~~~v~ 80 (316)
+.||.|.| .|..|..+-.++...|++ .+|..+|.+ .+. -.|+....+..|+.+. .|+.++++|... +.+++
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~--v~G~~~y~sv~dlp~~~~~Dlavi~vpa~~--v~~~l 80 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTT--VLGLPVFDSVKEAVEETGANASVIFVPAPF--AADAI 80 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCcce--ecCeeccCCHHHHhhccCCCEEEEecCHHH--HHHHH
Confidence 46899998 599999999999999998 667666662 111 1477888899998876 799999999765 56666
Q ss_pred cCCCCcccCCCCCCCeEEEEcCCCCHHH-HHHHHHHHhhch
Q 021213 81 NGPNGLLQGGNSVRPQLLIDSSTIDPQT-SRNISAAVSNCI 120 (316)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vi~~st~~~~~-~~~l~~~~~~~~ 120 (316)
.+. .+. .-+..+| .|.+.+.. .+++.+..++.+
T Consensus 81 ~e~---~~~---Gvk~avI-is~Gf~e~~~~~l~~~a~~~g 114 (286)
T TIGR01019 81 FEA---IDA---GIELIVC-ITEGIPVHDMLKVKRYMEESG 114 (286)
T ss_pred HHH---HHC---CCCEEEE-ECCCCCHHHHHHHHHHHHHcC
Confidence 543 211 0122444 34444333 355666655543
No 389
>PRK08017 oxidoreductase; Provisional
Probab=95.93 E-value=0.021 Score=48.97 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=36.4
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
+++|-|.|+ |.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 2 ~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~ 44 (256)
T PRK08017 2 QKSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNS 44 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHh
Confidence 357999998 999999999999999999999999887765543
No 390
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=95.93 E-value=0.021 Score=58.33 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=51.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh---------------------HHHHHHhCCCCCc--------CCH
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN---------------------VMKMFSDMGVPTK--------ETP 55 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~~--------~~~ 55 (316)
.+||+|||.|.-|.+.|..|++.||+|++|++... .++.+.+.|+.+. -+.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~dit~ 385 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTATL 385 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccEEeH
Confidence 37899999999999999999999999999998642 2344555665422 245
Q ss_pred HHHhh-cCCEEEEeCCC
Q 021213 56 FEVAE-ASDVVITMLPS 71 (316)
Q Consensus 56 ~~~~~-~adivi~~vp~ 71 (316)
+++.+ ..|.||+++-.
T Consensus 386 ~~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 386 EDLKAAGFWKIFVGTGA 402 (944)
T ss_pred HHhccccCCEEEEeCCC
Confidence 66554 68999999865
No 391
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.93 E-value=0.041 Score=48.03 Aligned_cols=74 Identities=20% Similarity=0.294 Sum_probs=55.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCC-CeEEEEeCChhHHHHHHhCCCCCcCCHHH-------Hhh-----cCCEEEEeCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNCNVMKMFSDMGVPTKETPFE-------VAE-----ASDVVITMLPSS 72 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~~~~~~l~~~g~~~~~~~~~-------~~~-----~adivi~~vp~~ 72 (316)
..++|+|+|.+|.+.+..-..+| .+++..|.|+++.+...+.|++-+-++.+ .+. ..|+-|-|+.+.
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfEc~G~~ 273 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKKPIQEVIIEMTDGGVDYSFECIGNV 273 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccccHHHHHHHHhcCCceEEEEecCCH
Confidence 57999999999999999988888 57999999999999999888765555443 221 356666666654
Q ss_pred hhhHHHHh
Q 021213 73 SHQVLDVY 80 (316)
Q Consensus 73 ~~~~~~v~ 80 (316)
.. +++.+
T Consensus 274 ~~-m~~al 280 (375)
T KOG0022|consen 274 ST-MRAAL 280 (375)
T ss_pred HH-HHHHH
Confidence 44 44443
No 392
>PRK07326 short chain dehydrogenase; Provisional
Probab=95.92 E-value=0.022 Score=48.27 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=34.6
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHH
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 44 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 44 (316)
.++|.|+| .|.+|..+++.|++.|++|++.+|++++.+.+
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~ 46 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEA 46 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHH
Confidence 46788887 49999999999999999999999998776554
No 393
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.92 E-value=0.046 Score=47.50 Aligned_cols=75 Identities=12% Similarity=0.139 Sum_probs=55.4
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||-+ .+|.+++..|.+.+..|++++... .++.+..++||+||.+++.+.- +..
T Consensus 157 Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T--------------~nl~~~~~~ADIvI~AvGk~~~-i~~----- 216 (282)
T PRK14182 157 GKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT--------------ADLAGEVGRADILVAAIGKAEL-VKG----- 216 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCcCc-cCH-----
Confidence 4789999866 579999999999999999987532 3566778899999999975432 211
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 217 -~~i-----k~gaiVIDvGin~ 232 (282)
T PRK14182 217 -AWV-----KEGAVVIDVGMNR 232 (282)
T ss_pred -HHc-----CCCCEEEEeecee
Confidence 122 2567999988654
No 394
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.92 E-value=0.034 Score=50.50 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=30.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~ 38 (316)
..+|.|||+|..|+.++..|+..|. +++++|.+.
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 4689999999999999999999995 799998764
No 395
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=95.90 E-value=0.02 Score=53.34 Aligned_cols=66 Identities=12% Similarity=0.128 Sum_probs=47.8
Q ss_pred CeEEEEccchhhH-HHHHHHHhC-----CCeEEEEeCChhHHHHHHh--------CC----CCCcCCHHHHhhcCCEEEE
Q 021213 6 QSVGFIGLGNMGF-RMASNLMKA-----GYKMAVHDVNCNVMKMFSD--------MG----VPTKETPFEVAEASDVVIT 67 (316)
Q Consensus 6 ~~IgiiG~G~mG~-~la~~l~~~-----g~~V~~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~adivi~ 67 (316)
|||+|||+|..=+ .+...|+.. +-+|.++|+++++.+.... .| +..++|..+++++||+||.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi~ 80 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVFA 80 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEEE
Confidence 6999999998522 344445543 3689999999987654321 23 5567899999999999999
Q ss_pred eCCC
Q 021213 68 MLPS 71 (316)
Q Consensus 68 ~vp~ 71 (316)
..--
T Consensus 81 ~irv 84 (437)
T cd05298 81 QIRV 84 (437)
T ss_pred Eeee
Confidence 7543
No 396
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.90 E-value=0.054 Score=47.19 Aligned_cols=75 Identities=16% Similarity=0.314 Sum_probs=55.5
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhC----CCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHH
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKA----GYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~----g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v 79 (316)
.+++.|||-+ .+|.+++..|.+. +..|++++... .++.+.+++||+||.+++.+.- +..
T Consensus 153 Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T--------------~~l~~~~~~ADIvV~AvG~p~~-i~~- 216 (287)
T PRK14181 153 GRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS--------------ENLTEILKTADIIIAAIGVPLF-IKE- 216 (287)
T ss_pred CCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcCc-cCH-
Confidence 4789999876 4799999999988 78899887532 3577778999999999976532 221
Q ss_pred hcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 80 YNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 217 -----~~i-----k~GavVIDvGin~ 232 (287)
T PRK14181 217 -----EMI-----AEKAVIVDVGTSR 232 (287)
T ss_pred -----HHc-----CCCCEEEEecccc
Confidence 123 3678999988654
No 397
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.89 E-value=0.065 Score=50.21 Aligned_cols=113 Identities=15% Similarity=0.165 Sum_probs=63.4
Q ss_pred CeEEEEccchhhHHHHHHHHhC--CCeEEEEeCChhH--HHHHHhCCCCCcCC--HHHHhhcCCEEEEe--CCCChhhHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKA--GYKMAVHDVNCNV--MKMFSDMGVPTKET--PFEVAEASDVVITM--LPSSSHQVL 77 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~--g~~V~~~~r~~~~--~~~l~~~g~~~~~~--~~~~~~~adivi~~--vp~~~~~~~ 77 (316)
++|.|||+|..|.+-++.|.+. |++|+++|..+.. .+.+.+ |+..... ..+.+.++|+||.. +|.....++
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~p~~~ 86 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DVELHSGGWNLEWLLEADLVVTNPGIALATPEIQ 86 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CCEEEeCCCChHHhccCCEEEECCCCCCCCHHHH
Confidence 5799999999999999999887 5899999975432 233543 6554211 23345789988884 554322133
Q ss_pred HHhcCCCCcccCC----CCCCCeEEEEc-CCCCHHHHHHHHHHHhhc
Q 021213 78 DVYNGPNGLLQGG----NSVRPQLLIDS-STIDPQTSRNISAAVSNC 119 (316)
Q Consensus 78 ~v~~~~~~~~~~~----~~~~~~~vi~~-st~~~~~~~~l~~~~~~~ 119 (316)
.....--+++... ...+.++|-.+ |.++..++.-+...+...
T Consensus 87 ~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~ 133 (438)
T PRK04663 87 QVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAA 133 (438)
T ss_pred HHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHC
Confidence 3222111111000 01122344444 444566666666666543
No 398
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.89 E-value=0.012 Score=54.58 Aligned_cols=33 Identities=30% Similarity=0.503 Sum_probs=31.2
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
.+|.|||.|.+|.+.|..|++.|++|+++++..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 489999999999999999999999999999875
No 399
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=95.89 E-value=0.21 Score=44.38 Aligned_cols=148 Identities=20% Similarity=0.332 Sum_probs=77.4
Q ss_pred CeEEEEccchhhHHHHHHHHh-CCCeEE-EEeCChhHHHHHHh-CCCC-----C---cCCHHHHhhcCCEEEEeCCCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMK-AGYKMA-VHDVNCNVMKMFSD-MGVP-----T---KETPFEVAEASDVVITMLPSSSH 74 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~-~g~~V~-~~~r~~~~~~~l~~-~g~~-----~---~~~~~~~~~~adivi~~vp~~~~ 74 (316)
-|||+||+|.||+.+....++ .|.+|. +-||+.+.+++..+ .|.. - .+...++++.-.+.+ .++
T Consensus 18 iRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~v---T~D-- 92 (438)
T COG4091 18 IRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAV---TDD-- 92 (438)
T ss_pred eEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEE---ecc--
Confidence 489999999999999888775 577765 45888887655543 2211 1 233344444333332 122
Q ss_pred hHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHH--HHHhhchhhhccCCCCCccEEec--cCCCChHhh-hcCc
Q 021213 75 QVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNIS--AAVSNCILKEKKDSWENPVMLDA--PVSGGVLAA-EAGT 149 (316)
Q Consensus 75 ~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~--~~~~~~~~~~~~g~~~~~~~~~~--p~~~~~~~~-~~g~ 149 (316)
.+.++.. +.+ .+|||.+... ..-.++. ....... +.+++. -++-++.-. ....
T Consensus 93 -~~~i~~~--~~I--------dvIIdATG~p-~vGA~~~l~Ai~h~KH----------lVMmNVEaDvtIGp~Lk~~Ad~ 150 (438)
T COG4091 93 -AELIIAN--DLI--------DVIIDATGVP-EVGAKIALEAILHGKH----------LVMMNVEADVTIGPILKQQADA 150 (438)
T ss_pred -hhhhhcC--Ccc--------eEEEEcCCCc-chhhHhHHHHHhcCCe----------EEEEEeeeceeecHHHHHHHhh
Confidence 2333321 111 2677776654 3223333 2222211 344443 333344321 1222
Q ss_pred eEEEe----cCCHHHHHHHHHHHHhcCCCeEeeCC
Q 021213 150 LTFMV----GGSEDAYQAAKPLFLSMGKNTIYCGG 180 (316)
Q Consensus 150 ~~~~~----~~~~~~~~~v~~ll~~~g~~v~~~g~ 180 (316)
.-++. |..+..+-++-++.+++|..++..|.
T Consensus 151 ~GviyS~~~GDeP~~~mEL~efa~a~G~evv~aGK 185 (438)
T COG4091 151 AGVIYSGGAGDEPSSCMELYEFASALGFEVVSAGK 185 (438)
T ss_pred cCeEEeccCCCCcHHHHHHHHHHHhcCCeEEeccC
Confidence 22222 23456677888899999977765543
No 400
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=95.87 E-value=0.014 Score=49.99 Aligned_cols=58 Identities=19% Similarity=0.172 Sum_probs=43.9
Q ss_pred ccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhh-cCCEEEEeC
Q 021213 12 GLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAE-ASDVVITML 69 (316)
Q Consensus 12 G~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~adivi~~v 69 (316)
|.|.+|+++...|.+.||+|++..|++.+.+......+..-+..++... .+|+||=-.
T Consensus 6 gTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLA 64 (297)
T COG1090 6 GTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLA 64 (297)
T ss_pred cccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEECC
Confidence 7899999999999999999999999988776544433333344455554 699988643
No 401
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=95.85 E-value=0.053 Score=48.31 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=56.1
Q ss_pred CCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||-+. +|.+++..|.+.+..|+++.... .++.+..++||+||.++..+.- +..
T Consensus 214 GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T--------------~nl~~~~~~ADIvIsAvGkp~~-v~~----- 273 (345)
T PLN02897 214 GKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT--------------KDPEQITRKADIVIAAAGIPNL-VRG----- 273 (345)
T ss_pred CCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHHhhCCEEEEccCCcCc-cCH-----
Confidence 47899998764 79999999999999999887532 3567778999999999976542 221
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 274 -d~v-----k~GavVIDVGin~ 289 (345)
T PLN02897 274 -SWL-----KPGAVVIDVGTTP 289 (345)
T ss_pred -HHc-----CCCCEEEEccccc
Confidence 122 2577999988654
No 402
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=95.81 E-value=0.043 Score=47.32 Aligned_cols=76 Identities=16% Similarity=0.239 Sum_probs=57.0
Q ss_pred CCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||-++ +|.+|+..|...++.|++++... .++.+..+++|++|.++..+.- +.
T Consensus 156 Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T--------------~~l~~~~k~ADIvv~AvG~p~~-i~------ 214 (283)
T COG0190 156 GKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT--------------KDLASITKNADIVVVAVGKPHF-IK------ 214 (283)
T ss_pred CCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC--------------CCHHHHhhhCCEEEEecCCccc-cc------
Confidence 46899999886 68999999999999999998642 3566778899999999965431 22
Q ss_pred CCcccCCCCCCCeEEEEcCCCCH
Q 021213 84 NGLLQGGNSVRPQLLIDSSTIDP 106 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~~ 106 (316)
.+.+ .++.++||.+.+..
T Consensus 215 ~d~v-----k~gavVIDVGinrv 232 (283)
T COG0190 215 ADMV-----KPGAVVIDVGINRV 232 (283)
T ss_pred cccc-----cCCCEEEecCCccc
Confidence 1233 25679999887653
No 403
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=95.81 E-value=0.054 Score=50.88 Aligned_cols=113 Identities=13% Similarity=0.093 Sum_probs=66.6
Q ss_pred eEEEEccchhh-HHHHHHHHhCCCeEEEEeCChh--HHHHHHhCCCCCc--CCHHHHhhcCCEEEEe--CCCChhhHHHH
Q 021213 7 SVGFIGLGNMG-FRMASNLMKAGYKMAVHDVNCN--VMKMFSDMGVPTK--ETPFEVAEASDVVITM--LPSSSHQVLDV 79 (316)
Q Consensus 7 ~IgiiG~G~mG-~~la~~l~~~g~~V~~~~r~~~--~~~~l~~~g~~~~--~~~~~~~~~adivi~~--vp~~~~~~~~v 79 (316)
+|-+||.|-+| +++|..|.+.|++|+++|.++. ..+.+.+.|+... .+......++|+||.. +|.....++..
T Consensus 1 ~~hfigigG~gm~~la~~l~~~G~~V~~~D~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~SpgI~~~~~~~~~a 80 (448)
T TIGR01081 1 HIHILGICGTFMGGLAMIAKQLGHEVTGSDANVYPPMSTQLEAQGIEIIEGFDAAQLEPKPDLVVIGNAMKRGNPCVEAV 80 (448)
T ss_pred CEEEEEECHHhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEeCCCCHHHCCCCCCEEEECCCCCCCCHHHHHH
Confidence 47799999999 8999999999999999997643 2334666676553 3444445579998883 55432213333
Q ss_pred hcCCCC------cccCCCCCCC-eEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 80 YNGPNG------LLQGGNSVRP-QLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 80 ~~~~~~------~~~~~~~~~~-~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
...--+ ++........ .+-|--|.++..++.-+...+...
T Consensus 81 ~~~~i~v~~~~e~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~ 127 (448)
T TIGR01081 81 LNLNLPYTSGPQWLHDFVLHDRWVLAVAGTHGKTTTASMLAWVLEQC 127 (448)
T ss_pred HHCCCCEEeHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence 221111 1110000112 344444555566666676777654
No 404
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.81 E-value=0.014 Score=45.11 Aligned_cols=34 Identities=32% Similarity=0.542 Sum_probs=30.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~ 38 (316)
+.||.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 4689999999999999999999996 799999763
No 405
>PLN02427 UDP-apiose/xylose synthase
Probab=95.80 E-value=0.025 Score=52.00 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=46.3
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhC-CCeEEEEeCChhHHHHHHhCC-------CC-----C--cCCHHHHhhcCCEEEEe
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKA-GYKMAVHDVNCNVMKMFSDMG-------VP-----T--KETPFEVAEASDVVITM 68 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~-g~~V~~~~r~~~~~~~l~~~g-------~~-----~--~~~~~~~~~~adivi~~ 68 (316)
.|||.|.| +|.+|+.+++.|.+. |++|++++|+.++...+.+.+ ++ . ..+..++++++|+||=+
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViHl 93 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTINL 93 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEEEc
Confidence 47899998 599999999999998 599999999877665543321 11 1 12234566678988765
Q ss_pred C
Q 021213 69 L 69 (316)
Q Consensus 69 v 69 (316)
.
T Consensus 94 A 94 (386)
T PLN02427 94 A 94 (386)
T ss_pred c
Confidence 3
No 406
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.80 E-value=0.063 Score=46.74 Aligned_cols=75 Identities=12% Similarity=0.168 Sum_probs=55.7
Q ss_pred CCeEEEEccc-hhhHHHHHHHHh--CCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhc
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMK--AGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYN 81 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~--~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~ 81 (316)
.+++.|||-+ .+|.+++..|.+ .+..|+++... +.++.+..++||+||.++..+.- +..
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~--------------T~~l~~~~k~ADIvV~AvGkp~~-i~~--- 219 (284)
T PRK14193 158 GAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG--------------TRDLAAHTRRADIIVAAAGVAHL-VTA--- 219 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC--------------CCCHHHHHHhCCEEEEecCCcCc-cCH---
Confidence 4789999865 579999999998 67889988753 24677888999999999976532 211
Q ss_pred CCCCcccCCCCCCCeEEEEcCCCC
Q 021213 82 GPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 82 ~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+...
T Consensus 220 ---~~i-----k~GavVIDvGin~ 235 (284)
T PRK14193 220 ---DMV-----KPGAAVLDVGVSR 235 (284)
T ss_pred ---HHc-----CCCCEEEEccccc
Confidence 123 2567999988654
No 407
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.79 E-value=0.21 Score=41.95 Aligned_cols=67 Identities=12% Similarity=0.160 Sum_probs=48.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh-HHHHHHhCC-CC---CcCCHHHHhhcCCEEEEeCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN-VMKMFSDMG-VP---TKETPFEVAEASDVVITMLPSS 72 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~-~~~~l~~~g-~~---~~~~~~~~~~~adivi~~vp~~ 72 (316)
.++|-|||.|.++..=+..|.+.|.+|+++.+... .+..+.+.| ++ ...++. .++.+++||.|+.+.
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~-dl~g~~LViaATdD~ 96 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKE-FIKDKHLIVIATDDE 96 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChH-HhCCCcEEEECCCCH
Confidence 36899999999999989999999999999986542 344444433 21 122333 357899999999764
No 408
>PLN02477 glutamate dehydrogenase
Probab=95.77 E-value=0.061 Score=49.51 Aligned_cols=101 Identities=16% Similarity=0.231 Sum_probs=60.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEE-EEeCC----------hhHHHHHHhCC--------CCCcCCHHHH-hhcCCE
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMA-VHDVN----------CNVMKMFSDMG--------VPTKETPFEV-AEASDV 64 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~-~~~r~----------~~~~~~l~~~g--------~~~~~~~~~~-~~~adi 64 (316)
.++|+|.|.|++|..+++.|.+.|..|+ +.|.+ .+.+....+.+ .... +.+++ ..+||+
T Consensus 206 g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e~l~~~~Dv 284 (410)
T PLN02477 206 GQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDDILVEPCDV 284 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCccceeccccE
Confidence 4789999999999999999999999988 66665 44443332221 1111 22332 348999
Q ss_pred EEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 65 VITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 65 vi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
++-|--...- -.+.+..+ +-++|+..++... + .+..+.+.+.
T Consensus 285 liP~Al~~~I-~~~na~~i----------~ak~I~egAN~p~-t-~ea~~~L~~r 326 (410)
T PLN02477 285 LIPAALGGVI-NKENAADV----------KAKFIVEAANHPT-D-PEADEILRKK 326 (410)
T ss_pred EeeccccccC-CHhHHHHc----------CCcEEEeCCCCCC-C-HHHHHHHHHC
Confidence 9987422221 22333221 2347777776654 2 3444556554
No 409
>PRK05866 short chain dehydrogenase; Provisional
Probab=95.77 E-value=0.048 Score=48.11 Aligned_cols=42 Identities=10% Similarity=0.186 Sum_probs=35.5
Q ss_pred CCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 4 FDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 4 ~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
..++|-|.|. |.+|..+++.|++.|++|++.+|+.++.+.+.
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~ 81 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVA 81 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 3467888875 99999999999999999999999987766554
No 410
>PRK06753 hypothetical protein; Provisional
Probab=95.75 E-value=0.013 Score=53.43 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=32.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
|+|.|||.|..|.++|..|++.|++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 5899999999999999999999999999998765
No 411
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=95.74 E-value=0.076 Score=46.44 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=38.2
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCe-EEEEeCChhHHHHHHhCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYK-MAVHDVNCNVMKMFSDMGVP 50 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~-V~~~~r~~~~~~~l~~~g~~ 50 (316)
.+|.|+|+|.+|...++.+...|.+ |++.++++++.+.+.+.|+.
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~ 167 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT 167 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc
Confidence 5799999999999999888888976 88889998888877777753
No 412
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=95.73 E-value=0.015 Score=54.00 Aligned_cols=34 Identities=29% Similarity=0.324 Sum_probs=31.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
|+|.|||.|.+|.+.|..|++.|++|+++++...
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 5899999999999999999999999999999753
No 413
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=95.72 E-value=0.081 Score=49.63 Aligned_cols=124 Identities=14% Similarity=0.194 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----c--CCCHHHHHHHHhhcc-CCccccc----cCCCCCCcccCCCCCCCC
Q 021213 184 GAAAKICNNLTMAVSMLGVSEALTLGQS----L--GISASTLTKILNSSS-ARCWSSD----SYNPVPGVMEGVPASRNY 252 (316)
Q Consensus 184 a~~~k~~~n~~~~~~~~~~~Ea~~l~~~----~--G~~~~~~~~~~~~~~-~~s~~~~----~~~~~~~~~~~~~~~~~~ 252 (316)
++.+|.+.|.+.+..+.+++|++.+.++ . ++|..++.++++.|. -.++..+ .+..-|++. +--+
T Consensus 304 ~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~-----nl~~ 378 (459)
T PRK09287 304 AEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRGGCIIRAQFLQKITDAYEANPDLA-----NLLL 378 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCEEeHHHHHHHHHHHHhCCCch-----hhcC
Confidence 7899999999999999999999999876 4 478999999999875 2344332 111111110 0001
Q ss_pred CCCcc--hhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhcCC
Q 021213 253 GGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 313 (316)
Q Consensus 253 ~~~~~--~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~ 313 (316)
.+.|. +......++.++..+-+.|+|+|.+.+....++.-... .....+-+..+.++++|
T Consensus 379 ~~~~~~~i~~~~~~~R~vV~~a~~~gip~P~ls~aL~y~d~~~~~-~~~anliqaqRd~FGaH 440 (459)
T PRK09287 379 DPYFKDILEEYQDALRRVVALAVQAGIPVPAFSSALSYYDSYRTA-RLPANLIQAQRDYFGAH 440 (459)
T ss_pred CHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CccHHHHHHHHhHhCCC
Confidence 11111 22334455788999999999999999999655555444 33345555566677766
No 414
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=95.72 E-value=0.061 Score=48.76 Aligned_cols=46 Identities=17% Similarity=0.274 Sum_probs=38.5
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeC---ChhHHHHHHhCCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDV---NCNVMKMFSDMGVP 50 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r---~~~~~~~l~~~g~~ 50 (316)
..+|.|+|+|.+|...++.+...|.+|++.+| ++++.+.+.+.|+.
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~ 221 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGAT 221 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Confidence 35799999999999999888888999999998 67777777776654
No 415
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.70 E-value=0.014 Score=50.71 Aligned_cols=92 Identities=20% Similarity=0.281 Sum_probs=63.0
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC-CCC------CcCCHHHHhhcCCEEEEeC--CCChhhH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM-GVP------TKETPFEVAEASDVVITML--PSSSHQV 76 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~-g~~------~~~~~~~~~~~adivi~~v--p~~~~~~ 76 (316)
-||.|||.|.+|+.-|+...--|-+|++.|+|.+++..+-.. +.+ .....++.+..+|++|-+| |...+ -
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka-P 247 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA-P 247 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC-c
Confidence 589999999999999999888899999999999987766552 222 1234567788999999874 33221 1
Q ss_pred HHHhcCCCCcccCCCCCCCeEEEEcCC
Q 021213 77 LDVYNGPNGLLQGGNSVRPQLLIDSST 103 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~~~vi~~st 103 (316)
+-+.+ ++++. +.++.++||..-
T Consensus 248 kLvt~---e~vk~--MkpGsVivDVAi 269 (371)
T COG0686 248 KLVTR---EMVKQ--MKPGSVIVDVAI 269 (371)
T ss_pred eehhH---HHHHh--cCCCcEEEEEEE
Confidence 11111 12222 446778888764
No 416
>PRK07060 short chain dehydrogenase; Provisional
Probab=95.69 E-value=0.045 Score=46.51 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=35.7
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
+++.|.|. |.+|..++..|++.|++|++.+|++++.+.+.+
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~ 51 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAG 51 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 67889987 899999999999999999999999887665543
No 417
>PRK05875 short chain dehydrogenase; Provisional
Probab=95.66 E-value=0.048 Score=47.39 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=35.5
Q ss_pred CCCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHH
Q 021213 3 FFDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 44 (316)
Q Consensus 3 ~~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 44 (316)
|..++|-|.|. |.+|..+++.|++.|++|++.+|++++.+..
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~ 47 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAA 47 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 33578889986 8999999999999999999999987765544
No 418
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=95.65 E-value=0.017 Score=53.14 Aligned_cols=38 Identities=24% Similarity=0.202 Sum_probs=33.0
Q ss_pred CCCC-CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 1 MLFF-DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 1 ~~~~-~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
|+++ +.+|.|||.|..|.++|..|++.|++|+++++.+
T Consensus 1 ~~~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 1 MSRRSRRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 4433 3579999999999999999999999999999864
No 419
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.62 E-value=0.1 Score=47.00 Aligned_cols=45 Identities=20% Similarity=0.368 Sum_probs=38.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVP 50 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~ 50 (316)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+.
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~ 216 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD 216 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc
Confidence 579999999999999988888887 688999999998888777753
No 420
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=95.59 E-value=0.05 Score=48.13 Aligned_cols=67 Identities=15% Similarity=0.155 Sum_probs=50.7
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHH---HHHHhC---C---------CCCcCCHHHHhhcCCEEEE
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVM---KMFSDM---G---------VPTKETPFEVAEASDVVIT 67 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~---~~l~~~---g---------~~~~~~~~~~~~~adivi~ 67 (316)
..++|+|-| .|.+|+.+...|+..||.|.+.-|+++.- +.+.+. . +.-..+..++++.||.||=
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH 84 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFH 84 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEE
Confidence 357899996 58999999999999999999999988862 223332 1 2334567889999999987
Q ss_pred e-CC
Q 021213 68 M-LP 70 (316)
Q Consensus 68 ~-vp 70 (316)
+ .|
T Consensus 85 ~Asp 88 (327)
T KOG1502|consen 85 TASP 88 (327)
T ss_pred eCcc
Confidence 3 44
No 421
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=95.58 E-value=0.048 Score=48.09 Aligned_cols=79 Identities=19% Similarity=0.170 Sum_probs=51.4
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCCC-eEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAGY-KMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.||+|+| .|+.|.-+.+.|.++.+ ++.....+.. .. ..+.+++++++|++|+|+|.... .+....+
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~---------~~-~~~~~~~~~~~D~vFlalp~~~s--~~~~~~~ 69 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR---------KD-AAERAKLLNAADVAILCLPDDAA--REAVSLV 69 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc---------cC-cCCHhHhhcCCCEEEECCCHHHH--HHHHHHH
Confidence 4899996 69999999999988753 3332221111 11 12456677889999999998753 4444322
Q ss_pred CCcccCCCCCCCeEEEEcCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTI 104 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~ 104 (316)
. ..+..|||.|+.
T Consensus 70 ---~-----~~g~~VIDlSad 82 (310)
T TIGR01851 70 ---D-----NPNTCIIDASTA 82 (310)
T ss_pred ---H-----hCCCEEEECChH
Confidence 1 145689999864
No 422
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.58 E-value=0.036 Score=53.71 Aligned_cols=67 Identities=21% Similarity=0.313 Sum_probs=49.1
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh---------------------hHHHHHHhCCCCCcC--------CHH
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC---------------------NVMKMFSDMGVPTKE--------TPF 56 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~---------------------~~~~~l~~~g~~~~~--------~~~ 56 (316)
++|.|||.|..|...|..|.+.|++|+++++.+ .+++.+.+.|+.... +..
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~~~ 217 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDITLE 217 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCCHH
Confidence 689999999999999999999999999999642 234455666653211 233
Q ss_pred HHhhcCCEEEEeCCCC
Q 021213 57 EVAEASDVVITMLPSS 72 (316)
Q Consensus 57 ~~~~~adivi~~vp~~ 72 (316)
+.....|+||+++...
T Consensus 218 ~~~~~~D~Vi~AtG~~ 233 (564)
T PRK12771 218 QLEGEFDAVFVAIGAQ 233 (564)
T ss_pred HHHhhCCEEEEeeCCC
Confidence 3345689999998654
No 423
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=95.56 E-value=0.078 Score=47.53 Aligned_cols=75 Identities=16% Similarity=0.241 Sum_probs=55.9
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||-+ .+|.+++..|.+.+..|+++.... .++.+..++||+||.++..+.- +..
T Consensus 231 GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T--------------~nl~~~~r~ADIVIsAvGkp~~-i~~----- 290 (364)
T PLN02616 231 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITREADIIISAVGQPNM-VRG----- 290 (364)
T ss_pred CCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCc-CCH-----
Confidence 4689999865 579999999999999999987532 3567778999999999976532 221
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 291 -d~v-----K~GAvVIDVGIn~ 306 (364)
T PLN02616 291 -SWI-----KPGAVVIDVGINP 306 (364)
T ss_pred -HHc-----CCCCEEEeccccc
Confidence 122 2667999988654
No 424
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.56 E-value=0.037 Score=47.18 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=37.8
Q ss_pred CCCCCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 1 MLFFDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 1 ~~~~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
|.+..++|.|+|+ |.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 1 ~~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~ 46 (251)
T PRK07231 1 MRLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVA 46 (251)
T ss_pred CCcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 4555678999975 89999999999999999999999987765543
No 425
>PRK08219 short chain dehydrogenase; Provisional
Probab=95.56 E-value=0.046 Score=45.84 Aligned_cols=40 Identities=10% Similarity=0.144 Sum_probs=33.6
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
+|+|-|.| .|.+|..++..|++. ++|++.+|+++..+.+.
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~ 43 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELA 43 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHH
Confidence 45788887 599999999999999 99999999987765544
No 426
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.53 E-value=0.19 Score=47.24 Aligned_cols=65 Identities=20% Similarity=0.323 Sum_probs=43.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhC---CCCCcCCHHHHhhcCCEEEEe--CCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDM---GVPTKETPFEVAEASDVVITM--LPSS 72 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~---g~~~~~~~~~~~~~adivi~~--vp~~ 72 (316)
.+|.|+|+|.-|.+.++.|.+ |.+|+++|.++.....+.+. .... ....+.+.++|+||.. +|..
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~vV~SPgI~~~ 76 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIA-ALSDSRWQNLDKIVLSPGIPLT 76 (454)
T ss_pred CEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceec-cCChhHhhCCCEEEECCCCCCC
Confidence 689999999999999999985 99999999654433222221 1111 1123445689998883 5543
No 427
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=95.52 E-value=0.059 Score=47.99 Aligned_cols=65 Identities=15% Similarity=0.159 Sum_probs=44.8
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHH---HHHhC-----C-------CCCcCCHHHHhhcCCEEEEe
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMK---MFSDM-----G-------VPTKETPFEVAEASDVVITM 68 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~---~l~~~-----g-------~~~~~~~~~~~~~adivi~~ 68 (316)
.++|.|.| +|.+|+.++..|++.||+|++.+|++.... .+... . +.-..+..++++++|+||-+
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~ 83 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFHT 83 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEEe
Confidence 36899998 699999999999999999999988765422 11110 1 11112345566778888775
Q ss_pred C
Q 021213 69 L 69 (316)
Q Consensus 69 v 69 (316)
.
T Consensus 84 A 84 (322)
T PLN02662 84 A 84 (322)
T ss_pred C
Confidence 4
No 428
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=95.50 E-value=0.019 Score=52.83 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=32.4
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhH
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNV 40 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~ 40 (316)
.|+|.|+|. |.+|+.+++.|.+.||+|++.+|++++
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~ 96 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSG 96 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhh
Confidence 478999975 999999999999999999999998754
No 429
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=95.50 E-value=0.021 Score=52.15 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=31.2
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
.|+|.|.|. |.+|+.++..|.+.||+|++.+|..
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 489999987 9999999999999999999999854
No 430
>PRK09126 hypothetical protein; Provisional
Probab=95.49 E-value=0.019 Score=52.83 Aligned_cols=36 Identities=19% Similarity=0.409 Sum_probs=32.7
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
||+.+|.|||.|.-|.++|..|++.|++|+++++.+
T Consensus 1 ~~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 36 (392)
T PRK09126 1 MMHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQP 36 (392)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 345689999999999999999999999999999865
No 431
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=95.47 E-value=0.035 Score=51.00 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=49.1
Q ss_pred CCCCeEEEEccchhhHHHHH-HHH-h----CCCeEEEEeCChhHHHHH-------H-hCC----CCCcCCHHHHhhcCCE
Q 021213 3 FFDQSVGFIGLGNMGFRMAS-NLM-K----AGYKMAVHDVNCNVMKMF-------S-DMG----VPTKETPFEVAEASDV 64 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~-~l~-~----~g~~V~~~~r~~~~~~~l-------~-~~g----~~~~~~~~~~~~~adi 64 (316)
|+++||+|||.|..+++--- .+. + .+.++.+||.+.++.+.. . +.| +..++|..+++++||+
T Consensus 1 m~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~gAdf 80 (442)
T COG1486 1 MKKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEGADF 80 (442)
T ss_pred CCcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcCCCE
Confidence 34579999999999866422 222 2 236899999998876522 2 233 4567899999999999
Q ss_pred EEEeCC
Q 021213 65 VITMLP 70 (316)
Q Consensus 65 vi~~vp 70 (316)
|+.+.-
T Consensus 81 Vi~~~r 86 (442)
T COG1486 81 VITQIR 86 (442)
T ss_pred EEEEEe
Confidence 999864
No 432
>PRK07411 hypothetical protein; Validated
Probab=95.47 E-value=0.038 Score=50.86 Aligned_cols=33 Identities=30% Similarity=0.456 Sum_probs=29.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVN 37 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~ 37 (316)
..+|.|||+|.+|+.++..|+.+|. +++++|.+
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4689999999999999999999994 68888865
No 433
>PRK07045 putative monooxygenase; Reviewed
Probab=95.46 E-value=0.021 Score=52.50 Aligned_cols=39 Identities=23% Similarity=0.139 Sum_probs=34.1
Q ss_pred CCCCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 1 MLFFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
|+..+.+|.|||.|..|...|..|+++|++|+++++.+.
T Consensus 1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAAR 39 (388)
T ss_pred CCCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 343456899999999999999999999999999998764
No 434
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=95.46 E-value=0.02 Score=52.67 Aligned_cols=36 Identities=25% Similarity=0.403 Sum_probs=32.8
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
|+.+|.|||.|..|.+.|..|++.|++|+++++.+.
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 356899999999999999999999999999998764
No 435
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.42 E-value=0.09 Score=45.98 Aligned_cols=75 Identities=17% Similarity=0.229 Sum_probs=54.8
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhC----CCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHH
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKA----GYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~----g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v 79 (316)
.+++.|||-+ .+|.+++..|.+. +..|+++.... .++.+..++||+||.+++.+.- +..
T Consensus 157 GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~nl~~~~~~ADIvIsAvGkp~~-i~~- 220 (293)
T PRK14185 157 GKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS--------------KNLKKECLEADIIIAALGQPEF-VKA- 220 (293)
T ss_pred CCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC--------------CCHHHHHhhCCEEEEccCCcCc-cCH-
Confidence 4789999876 4799999999988 56888886432 3567778899999999986542 211
Q ss_pred hcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 80 YNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
+.+ .++.++||.+.+.
T Consensus 221 -----~~v-----k~gavVIDvGin~ 236 (293)
T PRK14185 221 -----DMV-----KEGAVVIDVGTTR 236 (293)
T ss_pred -----HHc-----CCCCEEEEecCcc
Confidence 223 2567999988654
No 436
>PRK05868 hypothetical protein; Validated
Probab=95.41 E-value=0.021 Score=52.27 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=31.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
++|.|||.|..|.++|..|++.|++|+++++.++
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 5899999999999999999999999999998765
No 437
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.40 E-value=0.02 Score=51.82 Aligned_cols=88 Identities=16% Similarity=0.216 Sum_probs=52.0
Q ss_pred CeEEEEcc-chhhHHHHH-HHHhCCCe---EEEEeCChh--HHHHHHhCCCCCc--CCHHHHhhcCCEEEEeCCCChhhH
Q 021213 6 QSVGFIGL-GNMGFRMAS-NLMKAGYK---MAVHDVNCN--VMKMFSDMGVPTK--ETPFEVAEASDVVITMLPSSSHQV 76 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~-~l~~~g~~---V~~~~r~~~--~~~~l~~~g~~~~--~~~~~~~~~adivi~~vp~~~~~~ 76 (316)
++|+|+|+ |.+|.-|.+ .|....++ +..+..... +...+........ .+. +.++++|++|.|+|... .
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~-~~~~~~Divf~a~~~~~--s 78 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDI-DALKKLDIIITCQGGDY--T 78 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCCh-hHhcCCCEEEECCCHHH--H
Confidence 68999987 999999998 55555566 666554311 1111222111111 223 34578999999999765 3
Q ss_pred HHHhcCCCCcccCCCCCCC--eEEEEcCCC
Q 021213 77 LDVYNGPNGLLQGGNSVRP--QLLIDSSTI 104 (316)
Q Consensus 77 ~~v~~~~~~~~~~~~~~~~--~~vi~~st~ 104 (316)
+++.... . ..+ .+|||.|+.
T Consensus 79 ~~~~~~~---~-----~aG~~~~VID~Ss~ 100 (369)
T PRK06598 79 NEVYPKL---R-----AAGWQGYWIDAAST 100 (369)
T ss_pred HHHHHHH---H-----hCCCCeEEEECChH
Confidence 4444322 1 133 468888863
No 438
>PLN02214 cinnamoyl-CoA reductase
Probab=95.38 E-value=0.061 Score=48.60 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=45.2
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHH-----HHHhC--CC-----C--CcCCHHHHhhcCCEEEEeC
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMK-----MFSDM--GV-----P--TKETPFEVAEASDVVITML 69 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~-----~l~~~--g~-----~--~~~~~~~~~~~adivi~~v 69 (316)
+++|.|.|. |.+|+.++..|.++||+|++..|+.+... .+... .+ . -..+..++++.+|+||-+.
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A 89 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFHTA 89 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEEec
Confidence 468999987 99999999999999999999998765421 11111 11 1 1123445667788888764
No 439
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=95.36 E-value=0.037 Score=48.48 Aligned_cols=31 Identities=26% Similarity=0.463 Sum_probs=27.6
Q ss_pred eEEEEccchhhHHHHHHHHhCCC-eEEEEeCC
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGY-KMAVHDVN 37 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~ 37 (316)
||.|+|+|..|+.+++.|+..|. +++++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 68999999999999999999994 68888764
No 440
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.34 E-value=0.048 Score=46.30 Aligned_cols=44 Identities=25% Similarity=0.379 Sum_probs=37.0
Q ss_pred CCCCCCeEEEEcc-chhhHHHHHHHHhCCCeEEEE-eCChhHHHHH
Q 021213 1 MLFFDQSVGFIGL-GNMGFRMASNLMKAGYKMAVH-DVNCNVMKMF 44 (316)
Q Consensus 1 ~~~~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~-~r~~~~~~~l 44 (316)
|.+++++|-|+|. |.+|..++..|++.|++|++. +|++++.+.+
T Consensus 1 ~~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~ 46 (247)
T PRK05565 1 MKLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQEL 46 (247)
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH
Confidence 5566678999975 999999999999999999988 9987766544
No 441
>PLN02686 cinnamoyl-CoA reductase
Probab=95.33 E-value=0.062 Score=49.08 Aligned_cols=42 Identities=14% Similarity=0.198 Sum_probs=34.7
Q ss_pred CCCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHH
Q 021213 3 FFDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 44 (316)
Q Consensus 3 ~~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 44 (316)
+++++|.|.|. |.+|+.++..|++.||+|++..|+.+..+.+
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l 93 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKL 93 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 44578988875 9999999999999999999888877655444
No 442
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=95.31 E-value=0.025 Score=50.82 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=29.5
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
.+|.|||+|.-|.++|..|+++|++|+++++++.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 3799999999999999999999999999998755
No 443
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=95.30 E-value=0.058 Score=51.04 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=30.9
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
++|.|||.|..|...|..|++.|++|+++++.+
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~ 176 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERAD 176 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 689999999999999999999999999999753
No 444
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.29 E-value=0.12 Score=45.11 Aligned_cols=75 Identities=12% Similarity=0.198 Sum_probs=55.6
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCC
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGP 83 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~ 83 (316)
.+++.|||-+ .+|.+++..|.+.+..|++++... .++.+.+++||+||.+++.+.- +..
T Consensus 158 Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t--------------~~l~~~~~~ADIvI~AvG~p~~-i~~----- 217 (284)
T PRK14190 158 GKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT--------------KNLAELTKQADILIVAVGKPKL-ITA----- 217 (284)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCCCCc-CCH-----
Confidence 4789999865 579999999999999999987432 3567778999999999976532 111
Q ss_pred CCcccCCCCCCCeEEEEcCCCC
Q 021213 84 NGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 84 ~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+...
T Consensus 218 -~~i-----k~gavVIDvGi~~ 233 (284)
T PRK14190 218 -DMV-----KEGAVVIDVGVNR 233 (284)
T ss_pred -HHc-----CCCCEEEEeeccc
Confidence 122 2567999988654
No 445
>PRK06185 hypothetical protein; Provisional
Probab=95.29 E-value=0.025 Score=52.30 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=31.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
+.+|.|||.|..|.++|..|+++|++|+++++++
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 4679999999999999999999999999999865
No 446
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.28 E-value=0.055 Score=47.80 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=53.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~ 71 (316)
..+|+|||--.=-..+++.|.+.|++|.++.-+.+ .....|+...++.+++++++|+|+..+|.
T Consensus 2 ~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~---~~~~~g~~~~~~~~~~~~~ad~ii~~~p~ 65 (296)
T PRK08306 2 GKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQL---DHGFTGATKSSSLEEALSDVDVIILPVPG 65 (296)
T ss_pred CcEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccc---ccccCCceeeccHHHHhccCCEEEECCcc
Confidence 35899999999999999999999999999775432 12345788888888999999999999875
No 447
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=95.28 E-value=0.031 Score=51.44 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=30.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~ 38 (316)
..+|.|||+|.+|+.++..|+.+|. +++++|.+.
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 5689999999999999999999995 788888753
No 448
>PLN02240 UDP-glucose 4-epimerase
Probab=95.27 E-value=0.032 Score=50.41 Aligned_cols=37 Identities=30% Similarity=0.421 Sum_probs=33.4
Q ss_pred CCCCCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCC
Q 021213 1 MLFFDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVN 37 (316)
Q Consensus 1 ~~~~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~ 37 (316)
|+|+.++|.|.|. |.+|..+++.|.+.|++|++.+|.
T Consensus 1 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~ 38 (352)
T PLN02240 1 MSLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNL 38 (352)
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 7788889999975 999999999999999999999864
No 449
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=95.26 E-value=0.067 Score=47.91 Aligned_cols=67 Identities=16% Similarity=0.147 Sum_probs=45.2
Q ss_pred CCCCeEEEEcc-chhhHHHHHHHHhCC--CeEEEEeCChhHHHHHHhC----CC-----CCc--CCHHHHhhcCCEEEEe
Q 021213 3 FFDQSVGFIGL-GNMGFRMASNLMKAG--YKMAVHDVNCNVMKMFSDM----GV-----PTK--ETPFEVAEASDVVITM 68 (316)
Q Consensus 3 ~~~~~IgiiG~-G~mG~~la~~l~~~g--~~V~~~~r~~~~~~~l~~~----g~-----~~~--~~~~~~~~~adivi~~ 68 (316)
++.++|.|.|. |.+|+.+++.|++.| ++|++++|+..+...+.+. ++ ... .+..++++++|+||-+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~ 81 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHA 81 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEEC
Confidence 34578989974 999999999999986 7899999886654333221 11 111 1234456678888875
Q ss_pred C
Q 021213 69 L 69 (316)
Q Consensus 69 v 69 (316)
.
T Consensus 82 A 82 (324)
T TIGR03589 82 A 82 (324)
T ss_pred c
Confidence 3
No 450
>PRK07538 hypothetical protein; Provisional
Probab=95.25 E-value=0.024 Score=52.64 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=31.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
|+|.|||+|--|.++|..|.++|++|+++++.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 6899999999999999999999999999998764
No 451
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=95.25 E-value=0.051 Score=48.19 Aligned_cols=34 Identities=24% Similarity=0.501 Sum_probs=29.6
Q ss_pred eEEEEccchhhHHHHHHHHhCCC-eEEEEeCChhH
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCNV 40 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~~ 40 (316)
||.|||+|.+|+.++.+|+..|. +++++|.+.=.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve 35 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTID 35 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcc
Confidence 68999999999999999999994 79999876443
No 452
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=95.21 E-value=0.031 Score=51.17 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=32.8
Q ss_pred CCCCeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 3 FFDQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 3 ~~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
.++++|.|||.|-+|.+.|..|++.|++|+++++..
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence 356899999999999999999999999999999765
No 453
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=95.18 E-value=0.069 Score=48.39 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=34.3
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHH
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 44 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 44 (316)
.|+|-|.| +|.+|+.+++.|++.|++|++.+|++++.+.+
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~ 50 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHL 50 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHH
Confidence 47899998 69999999999999999999999887655443
No 454
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.18 E-value=0.027 Score=51.73 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=31.3
Q ss_pred CCCeEEEEccchhhHHHHHHHHhC---CCeEEEEeCC
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKA---GYKMAVHDVN 37 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~---g~~V~~~~r~ 37 (316)
+..+|.|||+|..|.++|..|++. |++|+++++.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 456899999999999999999998 9999999984
No 455
>PRK06847 hypothetical protein; Provisional
Probab=95.17 E-value=0.03 Score=51.08 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=32.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
+++|.|||.|.-|.++|..|.+.|++|++++++++
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 46899999999999999999999999999998754
No 456
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.16 E-value=0.14 Score=45.01 Aligned_cols=75 Identities=16% Similarity=0.178 Sum_probs=54.5
Q ss_pred CCeEEEEccc-hhhHHHHHHHHhC----CCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHH
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMKA----GYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~~----g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v 79 (316)
.+++.|||-+ .+|.+++..|.+. +..|+++.... .++.+..++||+||.++..+.- +..
T Consensus 157 Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~~l~~~~~~ADIvIsAvGkp~~-i~~- 220 (297)
T PRK14167 157 GADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT--------------DDLAAKTRRADIVVAAAGVPEL-IDG- 220 (297)
T ss_pred CCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcCc-cCH-
Confidence 4789999866 5799999999987 67899876432 3567778999999999865432 221
Q ss_pred hcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 80 YNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
..+ .++.++||.+.+.
T Consensus 221 -----~~i-----k~gaiVIDvGin~ 236 (297)
T PRK14167 221 -----SML-----SEGATVIDVGINR 236 (297)
T ss_pred -----HHc-----CCCCEEEEccccc
Confidence 122 2567999988654
No 457
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=95.16 E-value=0.17 Score=47.62 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcc-CCccccc----cCCCCCCcccCCCCCCCC
Q 021213 184 GAAAKICNNLTMAVSMLGVSEALTLGQS------LGISASTLTKILNSSS-ARCWSSD----SYNPVPGVMEGVPASRNY 252 (316)
Q Consensus 184 a~~~k~~~n~~~~~~~~~~~Ea~~l~~~------~G~~~~~~~~~~~~~~-~~s~~~~----~~~~~~~~~~~~~~~~~~ 252 (316)
++.+|.+.|++.+..+.+++|++.+.++ .++|..++.++++.|. -.++..+ .+..-+++. +--.
T Consensus 312 ~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~-----~l~~ 386 (467)
T TIGR00873 312 EEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIWRGGCIIRSGFLDKITKAFAENPDLA-----NLLL 386 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChh-----hhcC
Confidence 7889999999999999999999999876 7789999999999875 2334322 111111110 0001
Q ss_pred CCCcc--hhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhcCC
Q 021213 253 GGGFA--SKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGK 313 (316)
Q Consensus 253 ~~~~~--~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~g~~d~~~~~~~~~~~~ 313 (316)
.+.|. +......++.++..+-+.|+|+|.+.+...-++.....-. ...+-+.-+.++++|
T Consensus 387 ~~~~~~~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s~~~-~~nliqaqRd~FGaH 448 (467)
T TIGR00873 387 APYFKDALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRTARL-PANLLQAQRDYFGAH 448 (467)
T ss_pred CHHHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCcc-cHHHHHHHHHHhccc
Confidence 11111 2344455688999999999999999999988887776433 333444455555554
No 458
>PRK08013 oxidoreductase; Provisional
Probab=95.15 E-value=0.029 Score=51.79 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=32.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
..+|.|||+|..|.++|..|++.|++|+++++.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 35799999999999999999999999999998764
No 459
>PRK06475 salicylate hydroxylase; Provisional
Probab=95.14 E-value=0.028 Score=51.88 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=32.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
..||.|||.|.-|.++|..|.+.|++|+++++.++
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 36899999999999999999999999999998754
No 460
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=95.13 E-value=0.054 Score=46.11 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=34.7
Q ss_pred CCCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHH
Q 021213 3 FFDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKM 43 (316)
Q Consensus 3 ~~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~ 43 (316)
++.++|.|.| .|.+|..+++.|++.|++|++.+|++++...
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~ 45 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAA 45 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 3457888887 7999999999999999999999999765543
No 461
>PRK07588 hypothetical protein; Provisional
Probab=95.13 E-value=0.028 Score=51.75 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=31.4
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
|+|.|||.|..|.++|..|++.|++|+++++.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 5899999999999999999999999999997654
No 462
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=95.09 E-value=0.033 Score=52.43 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=32.2
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
.++|+|||+|.-|.+.|..|.+.|++|++++++..
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~ 44 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQ 44 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 47899999999999999999999999999998754
No 463
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=95.09 E-value=0.031 Score=51.50 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=30.8
Q ss_pred CeEEEEccchhhHHHHHHHHhC--CCeEEEEeCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKA--GYKMAVHDVNC 38 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~--g~~V~~~~r~~ 38 (316)
..|.|||.|.+|.++|..|++. |++|+++++.+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 5799999999999999999998 99999999864
No 464
>PRK07890 short chain dehydrogenase; Provisional
Probab=95.07 E-value=0.063 Score=46.06 Aligned_cols=45 Identities=18% Similarity=0.212 Sum_probs=37.0
Q ss_pred CCCCCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 1 MLFFDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 1 ~~~~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
|.+..++|-|.| .|.+|..++..|++.|++|++.+|+++..+.+.
T Consensus 1 ~~l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 46 (258)
T PRK07890 1 MLLKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVA 46 (258)
T ss_pred CccCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 455567888886 589999999999999999999999987665443
No 465
>PRK06813 homoserine dehydrogenase; Validated
Probab=95.07 E-value=0.15 Score=45.97 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.3
Q ss_pred CCeEEEEccchhhHHHHHHHHhC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKA 27 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~ 27 (316)
+.+|+++|+|.+|+.+++.|.++
T Consensus 2 ~i~I~liG~G~VG~~~~~~L~~~ 24 (346)
T PRK06813 2 KIKVVLSGYGTVGREFIKLLNEK 24 (346)
T ss_pred eeEEEEEecChhHHHHHHHHHHh
Confidence 46899999999999999998654
No 466
>PLN02650 dihydroflavonol-4-reductase
Probab=95.07 E-value=0.11 Score=47.06 Aligned_cols=66 Identities=15% Similarity=0.199 Sum_probs=45.9
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh----CC-----------CCCcCCHHHHhhcCCEEEE
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD----MG-----------VPTKETPFEVAEASDVVIT 67 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~----~g-----------~~~~~~~~~~~~~adivi~ 67 (316)
..++|-|.| +|.+|+.++..|++.|++|++.+|+++....+.. .+ +.-..+..++++++|.||-
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ViH 83 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVFH 83 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEEE
Confidence 457899997 5999999999999999999999888665433221 11 1111234556677888776
Q ss_pred eC
Q 021213 68 ML 69 (316)
Q Consensus 68 ~v 69 (316)
+.
T Consensus 84 ~A 85 (351)
T PLN02650 84 VA 85 (351)
T ss_pred eC
Confidence 53
No 467
>PRK09072 short chain dehydrogenase; Provisional
Probab=95.06 E-value=0.068 Score=46.09 Aligned_cols=45 Identities=24% Similarity=0.369 Sum_probs=37.7
Q ss_pred CCCCCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 1 MLFFDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 1 ~~~~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
|.+..++|-|.| .|.+|..+++.|++.|++|++.+|+++..+.+.
T Consensus 1 m~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 46 (263)
T PRK09072 1 MDLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALA 46 (263)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 455567888887 599999999999999999999999987765553
No 468
>PRK09291 short chain dehydrogenase; Provisional
Probab=95.06 E-value=0.081 Score=45.33 Aligned_cols=41 Identities=12% Similarity=0.168 Sum_probs=34.6
Q ss_pred CCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 5 DQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 5 ~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
+++|-|.|+ |.+|..+++.|++.|++|++.+|+++..+.+.
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~ 43 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALR 43 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 457888875 89999999999999999999999887665554
No 469
>PRK07774 short chain dehydrogenase; Provisional
Probab=95.05 E-value=0.07 Score=45.52 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=34.7
Q ss_pred CCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHH
Q 021213 4 FDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMF 44 (316)
Q Consensus 4 ~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l 44 (316)
+.+++-|.|. |.+|..+++.|++.|++|++.+|+++..+.+
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~ 46 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERV 46 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 3467888886 9999999999999999999999987665444
No 470
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=95.05 E-value=0.029 Score=52.06 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=31.3
Q ss_pred CeEEEEccchhhHHHHHHHHhCCC-eEEEEeCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNCN 39 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~~ 39 (316)
|||.|||.|--|.++|..|.++|+ +|++|++.++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 589999999999999999999985 9999999765
No 471
>PRK06126 hypothetical protein; Provisional
Probab=95.04 E-value=0.033 Score=53.72 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=31.6
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
.+|.|||+|-.|..+|..|++.|++|+++++.+.
T Consensus 8 ~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 8 TPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 5799999999999999999999999999998754
No 472
>PRK09414 glutamate dehydrogenase; Provisional
Probab=95.04 E-value=0.12 Score=48.18 Aligned_cols=106 Identities=10% Similarity=0.093 Sum_probs=62.5
Q ss_pred CCCeEEEEccchhhHHHHHHHHhCCCeEEEE-e----------CChhHHHHHHhC--C-CCC--------cCCHHHHh-h
Q 021213 4 FDQSVGFIGLGNMGFRMASNLMKAGYKMAVH-D----------VNCNVMKMFSDM--G-VPT--------KETPFEVA-E 60 (316)
Q Consensus 4 ~~~~IgiiG~G~mG~~la~~l~~~g~~V~~~-~----------r~~~~~~~l~~~--g-~~~--------~~~~~~~~-~ 60 (316)
..++|.|.|.|++|...|+.|.+.|..|+.. | .+.+.+....+. | +.. ..+.++++ .
T Consensus 231 ~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i~~~ 310 (445)
T PRK09414 231 EGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPWSV 310 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcccccc
Confidence 3579999999999999999999999998876 6 455544443321 1 110 11233333 3
Q ss_pred cCCEEEEeCCCChhhHHHHhcCCCCcccCCCCCCCeEEEEcCCCCHHHHHHHHHHHhhc
Q 021213 61 ASDVVITMLPSSSHQVLDVYNGPNGLLQGGNSVRPQLLIDSSTIDPQTSRNISAAVSNC 119 (316)
Q Consensus 61 ~adivi~~vp~~~~~~~~v~~~~~~~~~~~~~~~~~~vi~~st~~~~~~~~l~~~~~~~ 119 (316)
+|||+|-|...+.. ..+....+ .. .+-++|+..++... + ..-.+.+.+.
T Consensus 311 d~DVliPaAl~n~I-t~~~a~~i---~~----~~akiIvEgAN~p~-t-~~A~~~L~~r 359 (445)
T PRK09414 311 PCDIALPCATQNEL-DEEDAKTL---IA----NGVKAVAEGANMPS-T-PEAIEVFLEA 359 (445)
T ss_pred CCcEEEecCCcCcC-CHHHHHHH---HH----cCCeEEEcCCCCCC-C-HHHHHHHHHC
Confidence 79999998765543 23322221 10 02247776666653 2 3344555543
No 473
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=95.04 E-value=0.075 Score=47.27 Aligned_cols=88 Identities=20% Similarity=0.188 Sum_probs=63.4
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHHhcCCCC
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDVYNGPNG 85 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v~~~~~~ 85 (316)
+++.|.|.|-.|..+|..+.-.|.+|++++.+|-++-...=.|.++ .+.+++.+.+|++|.|+.+. +|+.. +
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V-~~m~~Aa~~gDifiT~TGnk-----dVi~~--e 281 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRV-MTMEEAAKTGDIFVTATGNK-----DVIRK--E 281 (420)
T ss_pred ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEE-EEhHHhhhcCCEEEEccCCc-----CccCH--H
Confidence 6788889999999999999999999999999876653333356554 45788889999999998753 33321 1
Q ss_pred cccCCCCCCCeEEEEcCC
Q 021213 86 LLQGGNSVRPQLLIDSST 103 (316)
Q Consensus 86 ~~~~~~~~~~~~vi~~st 103 (316)
++.. ++.+.++.|...
T Consensus 282 h~~~--MkDgaIl~N~GH 297 (420)
T COG0499 282 HFEK--MKDGAILANAGH 297 (420)
T ss_pred HHHh--ccCCeEEecccc
Confidence 2221 345667777664
No 474
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.03 E-value=0.041 Score=48.61 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=32.9
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHH
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKM 43 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~ 43 (316)
|+|-|.| .|.+|+.++..|.+.||+|.+.+|.......
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~ 39 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDP 39 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccc
Confidence 3588999 6999999999999999999999997765543
No 475
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=95.00 E-value=0.11 Score=46.42 Aligned_cols=39 Identities=15% Similarity=0.084 Sum_probs=32.6
Q ss_pred CCCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHH
Q 021213 3 FFDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVM 41 (316)
Q Consensus 3 ~~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~ 41 (316)
-..++|-|.| .|.+|+.++..|++.|++|++..|++...
T Consensus 3 ~~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~ 42 (325)
T PLN02989 3 DGGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDR 42 (325)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcch
Confidence 3357888997 59999999999999999999888876543
No 476
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=94.99 E-value=0.033 Score=51.24 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=31.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVN 37 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~ 37 (316)
.++|.|||+|..|.++|..|.++|++|+++++.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 468999999999999999999999999999997
No 477
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=94.97 E-value=0.072 Score=45.96 Aligned_cols=41 Identities=15% Similarity=0.258 Sum_probs=34.3
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
+++-|.|. |.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQ 48 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 56667764 789999999999999999999999887766544
No 478
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=94.97 E-value=0.047 Score=48.57 Aligned_cols=182 Identities=15% Similarity=0.060 Sum_probs=92.6
Q ss_pred hhHHHHHHHHhCCCeEEEEeCChhHHHHHHh-----------CC-------------CCCcCCHHHHhhcCCEEEEeCCC
Q 021213 16 MGFRMASNLMKAGYKMAVHDVNCNVMKMFSD-----------MG-------------VPTKETPFEVAEASDVVITMLPS 71 (316)
Q Consensus 16 mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~-----------~g-------------~~~~~~~~~~~~~adivi~~vp~ 71 (316)
||..||..+..+|+++++.+.|..-++.-+. .+ ...+.+. .-++++|+++-++-.
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy-~~~~~~dmvieav~e 79 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDY-TGFANADMVIEAVFE 79 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhccccccc-ccccccceeccchhh
Confidence 8999999999999999999998654332111 01 1112222 235689999888877
Q ss_pred ChhhHHHHhcCCCCcccCCCCCCCe-EEEEcCCCCHHHHHHHHHHHhhchhhhccCCCCCccEEeccCCCChHhhhcCce
Q 021213 72 SSHQVLDVYNGPNGLLQGGNSVRPQ-LLIDSSTIDPQTSRNISAAVSNCILKEKKDSWENPVMLDAPVSGGVLAAEAGTL 150 (316)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~~~~~~~~-~vi~~st~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~g~~ 150 (316)
+-....+++.+++.+.+ +.. .=.++|+..+. .+++.+... .... |.||......-..........
T Consensus 80 dl~Lk~~l~~~le~v~~-----~~~i~gsntSs~~~~---~isa~ld~~--e~vv----g~h~fspa~~m~LlEii~~~~ 145 (380)
T KOG1683|consen 80 DLELKHELFKSLEKVEP-----PKCIRGSNTSSLDIN---VISAGLDRP--EMVV----GMHFFSPAHWMQLLEIILALY 145 (380)
T ss_pred hHHHHHHHHHHHHhhcC-----CcceeeeccccCChH---HHhhccCch--hhhc----cccccCHHHHHHHHHHHHhcC
Confidence 65534566666666553 222 22344544443 344333221 0011 244443332222222211221
Q ss_pred EEEecCCHHHHHHHHHHHHhcCCCeEeeCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 021213 151 TFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNS 225 (316)
Q Consensus 151 ~~~~~~~~~~~~~v~~ll~~~g~~v~~~g~~g~a~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~ 225 (316)
+ +......+...-...|+.++.++.. -+..+ |.... ..+.++..+-...|.+|..+..+...
T Consensus 146 t-----S~~~iA~Ain~~~~~gk~~vvVg~c-~gf~v----~r~l~---~y~~~~~~~l~e~g~~p~~iD~~~t~ 207 (380)
T KOG1683|consen 146 T-----SKLTIATAINGGSPAGKLPVVVGNC-CGFRV----NRLLP---PYTIGLNELLLEIGADPWLIDSLITK 207 (380)
T ss_pred C-----CchHHHHHHhcccccCCccEEeccC-CceEE----Eeccc---HHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 2 5555555656666677766666661 22221 11111 11234444566667777666665543
No 479
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.97 E-value=0.16 Score=44.67 Aligned_cols=75 Identities=11% Similarity=0.197 Sum_probs=54.2
Q ss_pred CCeEEEEccc-hhhHHHHHHHHh----CCCeEEEEeCChhHHHHHHhCCCCCcCCHHHHhhcCCEEEEeCCCChhhHHHH
Q 021213 5 DQSVGFIGLG-NMGFRMASNLMK----AGYKMAVHDVNCNVMKMFSDMGVPTKETPFEVAEASDVVITMLPSSSHQVLDV 79 (316)
Q Consensus 5 ~~~IgiiG~G-~mG~~la~~l~~----~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~adivi~~vp~~~~~~~~v 79 (316)
.++|.|||-+ .+|.+++..|.+ .+..|+.+..+. .++.+.+++||+||.+++.+.- +..
T Consensus 159 Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t--------------~~l~~~~~~ADIvI~Avg~~~l-i~~- 222 (295)
T PRK14174 159 GKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT--------------KDIPSYTRQADILIAAIGKARF-ITA- 222 (295)
T ss_pred CCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCccCc-cCH-
Confidence 4789999876 579999999987 678899887653 2467778899999999975421 111
Q ss_pred hcCCCCcccCCCCCCCeEEEEcCCCC
Q 021213 80 YNGPNGLLQGGNSVRPQLLIDSSTID 105 (316)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vi~~st~~ 105 (316)
.++ .++.++||.+...
T Consensus 223 -----~~v-----k~GavVIDVgi~~ 238 (295)
T PRK14174 223 -----DMV-----KPGAVVIDVGINR 238 (295)
T ss_pred -----HHc-----CCCCEEEEeeccc
Confidence 122 2567999988553
No 480
>PLN00198 anthocyanidin reductase; Provisional
Probab=94.96 E-value=0.099 Score=47.01 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=31.7
Q ss_pred CCCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhH
Q 021213 4 FDQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNV 40 (316)
Q Consensus 4 ~~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~ 40 (316)
++++|.|.| +|.+|+.++..|.+.|++|.+..|+++.
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~ 45 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPEN 45 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 347899997 8999999999999999999888777543
No 481
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=94.94 E-value=0.038 Score=45.80 Aligned_cols=34 Identities=32% Similarity=0.471 Sum_probs=30.6
Q ss_pred CCeEEEEccchhhHHHHHHHHhCC-CeEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAG-YKMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g-~~V~~~~r~~ 38 (316)
+.+|.|||+|.+|+.++.+|+..| .+++++|.+.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 478999999999999999999999 5699998763
No 482
>PRK06482 short chain dehydrogenase; Provisional
Probab=94.93 E-value=0.1 Score=45.40 Aligned_cols=42 Identities=14% Similarity=0.189 Sum_probs=36.0
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
.+++-|.| .|.+|..++..|++.|++|++..|+++..+.+.+
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~ 44 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKA 44 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46788887 6999999999999999999999999887766544
No 483
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=94.91 E-value=0.038 Score=50.42 Aligned_cols=33 Identities=30% Similarity=0.330 Sum_probs=30.7
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
-.|.|||.|.+|.++|..|++.|++|+++++..
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 469999999999999999999999999999864
No 484
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=94.90 E-value=0.077 Score=45.57 Aligned_cols=42 Identities=12% Similarity=0.234 Sum_probs=35.3
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
.+++-|.| .|.+|..+++.|++.|++|.+.+|+.++.+.+.+
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 48 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAAL 48 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 45677886 5999999999999999999999999887665543
No 485
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=94.89 E-value=0.064 Score=48.54 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=31.1
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
+|||-|.| +|.+|+.++..|.+.|++|++++|...
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~ 50 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFST 50 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 47899998 599999999999999999999998543
No 486
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=94.89 E-value=0.078 Score=45.75 Aligned_cols=46 Identities=17% Similarity=0.240 Sum_probs=37.1
Q ss_pred CCCCCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHHh
Q 021213 1 MLFFDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFSD 46 (316)
Q Consensus 1 ~~~~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~~ 46 (316)
|.+..+++-|.|. |.+|..+++.|++.|++|++.+|+.++.+.+.+
T Consensus 1 m~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~ 47 (262)
T TIGR03325 1 MRLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEA 47 (262)
T ss_pred CCcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 4444567777765 789999999999999999999999877766543
No 487
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=94.89 E-value=0.065 Score=49.05 Aligned_cols=62 Identities=27% Similarity=0.362 Sum_probs=44.1
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChhHH-HHHHhCCCC-CcCC---HHHHhhcCCEEEE
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCNVM-KMFSDMGVP-TKET---PFEVAEASDVVIT 67 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~~~-~~l~~~g~~-~~~~---~~~~~~~adivi~ 67 (316)
++|||||.|..|..++....+.|++|.++|.+++.. ..+.+.-+. ...| ..++++.||+|..
T Consensus 3 ~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 589999999999999999999999999999876542 222222111 1233 3456678998754
No 488
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=94.88 E-value=0.15 Score=45.53 Aligned_cols=65 Identities=17% Similarity=0.164 Sum_probs=44.9
Q ss_pred CCeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHH---HHh-CC-----------CCCcCCHHHHhhcCCEEEEe
Q 021213 5 DQSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKM---FSD-MG-----------VPTKETPFEVAEASDVVITM 68 (316)
Q Consensus 5 ~~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~---l~~-~g-----------~~~~~~~~~~~~~adivi~~ 68 (316)
.++|.|.| .|.+|+.++..|.+.||+|++..|+.+..+. +.. .+ +.-..+..++++.+|+||-+
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~ 84 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFHT 84 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEEe
Confidence 47899997 6999999999999999999988777654322 211 11 11112345567778888875
Q ss_pred C
Q 021213 69 L 69 (316)
Q Consensus 69 v 69 (316)
.
T Consensus 85 A 85 (322)
T PLN02986 85 A 85 (322)
T ss_pred C
Confidence 4
No 489
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=94.85 E-value=0.039 Score=50.79 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=32.4
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
+.+|.|||+|..|..+|..|++.|++|+++++.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 56899999999999999999999999999998763
No 490
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=94.84 E-value=0.036 Score=53.05 Aligned_cols=34 Identities=26% Similarity=0.505 Sum_probs=28.4
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
+||+|||+|.-|.+.++.|.+.|+++++++++.+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~ 35 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD 35 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCC
Confidence 6899999999999999999999999999998765
No 491
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=94.80 E-value=0.042 Score=50.75 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=30.9
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
+++|.|||.|..|+..|..|++.|++|++++..+
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp 35 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP 35 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 4689999999999999999999999999998543
No 492
>PRK08177 short chain dehydrogenase; Provisional
Probab=94.80 E-value=0.11 Score=43.63 Aligned_cols=40 Identities=13% Similarity=0.281 Sum_probs=33.8
Q ss_pred CeEEEEc-cchhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 6 QSVGFIG-LGNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 6 ~~IgiiG-~G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
+++-|.| .|.+|..+++.|++.|++|++.+|+++..+.+.
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 42 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQ 42 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHH
Confidence 4577776 899999999999999999999999987665543
No 493
>PRK07825 short chain dehydrogenase; Provisional
Probab=94.79 E-value=0.089 Score=45.65 Aligned_cols=45 Identities=20% Similarity=0.233 Sum_probs=37.5
Q ss_pred CCCCCCeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 1 MLFFDQSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 1 ~~~~~~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
|.+..++|-|.|+ |.+|..+++.|++.|++|.+.+|++++.+.+.
T Consensus 1 ~~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 46 (273)
T PRK07825 1 DDLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETA 46 (273)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 4455577888875 89999999999999999999999988776543
No 494
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=94.79 E-value=0.043 Score=50.36 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=30.8
Q ss_pred CeEEEEccchhhHHHHHHHHhCCCeEEEEeCCh
Q 021213 6 QSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNC 38 (316)
Q Consensus 6 ~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~ 38 (316)
.+|.|||.|..|.++|..|++.|++|+++++.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 489999999999999999999999999999754
No 495
>PRK05884 short chain dehydrogenase; Provisional
Probab=94.78 E-value=0.077 Score=44.71 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=34.7
Q ss_pred CeEEEEcc-chhhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 6 QSVGFIGL-GNMGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 6 ~~IgiiG~-G~mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
||+-|.|+ |.+|.++++.|++.|++|++.+|++++.+.+.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~ 41 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAA 41 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 47888876 89999999999999999999999988776554
No 496
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.77 E-value=0.039 Score=51.14 Aligned_cols=35 Identities=23% Similarity=0.448 Sum_probs=32.0
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCCeEEEEeCChh
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGYKMAVHDVNCN 39 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~~~ 39 (316)
+.+|.|||+|.-|.++|..|++.|++|+++++.+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 35899999999999999999999999999998654
No 497
>PRK08862 short chain dehydrogenase; Provisional
Probab=94.70 E-value=0.089 Score=44.53 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=36.6
Q ss_pred CCCCCCeEEEEccch-hhHHHHHHHHhCCCeEEEEeCChhHHHHHH
Q 021213 1 MLFFDQSVGFIGLGN-MGFRMASNLMKAGYKMAVHDVNCNVMKMFS 45 (316)
Q Consensus 1 ~~~~~~~IgiiG~G~-mG~~la~~l~~~g~~V~~~~r~~~~~~~l~ 45 (316)
|.+..+++-|.|++. +|.+++..|++.|++|.+.+|++++.+.+.
T Consensus 1 ~~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~ 46 (227)
T PRK08862 1 MDIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTY 46 (227)
T ss_pred CCCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 445556777887655 999999999999999999999988776553
No 498
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=94.70 E-value=0.12 Score=43.83 Aligned_cols=32 Identities=28% Similarity=0.578 Sum_probs=28.6
Q ss_pred eEEEEccchhhHHHHHHHHhCCC-eEEEEeCCh
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGY-KMAVHDVNC 38 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~-~V~~~~r~~ 38 (316)
||.|||+|..|+.++..|+..|. +++++|.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 68999999999999999999995 688888764
No 499
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=94.66 E-value=0.05 Score=48.82 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=29.7
Q ss_pred eEEEEccchhhHHHHHHHHhCCCeEEEEeCC
Q 021213 7 SVGFIGLGNMGFRMASNLMKAGYKMAVHDVN 37 (316)
Q Consensus 7 ~IgiiG~G~mG~~la~~l~~~g~~V~~~~r~ 37 (316)
+|.|||.|-.|..+|..|++.|++|++++++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 4889999999999999999999999999987
No 500
>PRK07877 hypothetical protein; Provisional
Probab=94.66 E-value=0.067 Score=52.84 Aligned_cols=32 Identities=25% Similarity=0.578 Sum_probs=28.1
Q ss_pred CCeEEEEccchhhHHHHHHHHhCCC--eEEEEeCC
Q 021213 5 DQSVGFIGLGNMGFRMASNLMKAGY--KMAVHDVN 37 (316)
Q Consensus 5 ~~~IgiiG~G~mG~~la~~l~~~g~--~V~~~~r~ 37 (316)
+.+|+|+|+| +|+.++..|++.|- +++++|.+
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D 140 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFD 140 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCC
Confidence 4689999999 99999999999993 78888765
Done!