BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021214
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 11/134 (8%)
Query: 54 YEDV-WLRSSDGVRLHAWFIKLFPDCRGPTILFFQENAGNIAHRLEMVRIMLQRLHCNVF 112
Y+D+ L ++DG L + K P ++F AG + R E + ML L VF
Sbjct: 34 YQDLPHLVNADGQYLFCRYWK--PTGTPKALIFVSHGAGEHSGRYEELARMLMGLDLLVF 91
Query: 113 MLSYRGYGESDG----YPSQHGITRDAQAALEHL-SQRTDIDTTRIVVFGRSLGGAVGAV 167
+ G+G+S+G H RD L+H+ S + D + + G S+GGA+ +
Sbjct: 92 AHDHVGHGQSEGERMVVSDFHVFVRD---VLQHVDSMQKDYPGLPVFLLGHSMGGAIAIL 148
Query: 168 LTKNNPDKVAALIL 181
P A ++L
Sbjct: 149 TAAERPGHFAGMVL 162
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 11/134 (8%)
Query: 54 YEDV-WLRSSDGVRLHAWFIKLFPDCRGPTILFFQENAGNIAHRLEMVRIMLQRLHCNVF 112
Y+D+ L ++DG L + K P ++F AG + R E + ML L VF
Sbjct: 33 YQDLPHLVNADGQYLFCRYWK--PTGTPKALIFVSHGAGEHSGRYEELARMLMGLDLLVF 90
Query: 113 MLSYRGYGESDG----YPSQHGITRDAQAALEHL-SQRTDIDTTRIVVFGRSLGGAVGAV 167
+ G+G+S+G H RD L+H+ S + D + + G S+GGA+ +
Sbjct: 91 AHDHVGHGQSEGERMVVSDFHVFVRD---VLQHVDSMQKDYPGLPVFLLGHSMGGAIAIL 147
Query: 168 LTKNNPDKVAALIL 181
P A ++L
Sbjct: 148 TAAERPGHFAGMVL 161
>pdb|3FVR|A Chain A, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|B Chain B, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|C Chain C, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|D Chain D, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|E Chain E, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|F Chain F, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|G Chain G, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|H Chain H, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|I Chain I, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|L Chain L, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|M Chain M, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVR|N Chain N, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form I
pdb|3FVT|A Chain A, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|B Chain B, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|C Chain C, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|D Chain D, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|E Chain E, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|F Chain F, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|G Chain G, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|H Chain H, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|I Chain I, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|L Chain L, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|M Chain M, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FVT|N Chain N, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus, Monoclinic Crystal Form Ii
pdb|3FYU|C Chain C, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus Obtained In Presence Of D-Xylose And Sodium
Acetate
pdb|3FYU|E Chain E, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus Obtained In Presence Of D-Xylose And Sodium
Acetate
pdb|3FYU|F Chain F, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus Obtained In Presence Of D-Xylose And Sodium
Acetate
pdb|3FYU|G Chain G, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus Obtained In Presence Of D-Xylose And Sodium
Acetate
pdb|3FYU|L Chain L, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus Obtained In Presence Of D-Xylose And Sodium
Acetate
pdb|3FYU|M Chain M, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus Obtained In Presence Of D-Xylose And Sodium
Acetate
pdb|3FYU|N Chain N, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus Obtained In Presence Of D-Xylose And Sodium
Acetate
Length = 320
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 130 GITRDAQAALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLTKNN--PDKVAA-LILENTFT 186
G+ DA ALE + ++D RI V G S GGA+ + P V A + F
Sbjct: 152 GVYLDAVRALEVIQSFPEVDEHRIGVIGGSQGGALAIAAAALSDIPKVVVADYPYLSNFE 211
Query: 187 SILDMAGVLLPFLKWFIGGSGSKGPRILN--FLVRSPWSTIDVVGEIKQPILFLSGLQDE 244
+D+A + P+L+ + P++ F S + I++ G +KQP L GL D+
Sbjct: 212 RAVDVA-LEQPYLEINSYFRRNSDPKVEEKAFETLSYFDLINLAGWVKQPTLMAIGLIDK 270
Query: 245 MVPPS 249
+ PPS
Sbjct: 271 ITPPS 275
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 11/134 (8%)
Query: 54 YEDV-WLRSSDGVRLHAWFIKLFPDCRGPTILFFQENAGNIAHRLEMVRIMLQRLHCNVF 112
Y+D+ L ++DG L + P ++F AG + R E + ML L VF
Sbjct: 16 YQDLPHLVNADGQYLFCRYWA--PTGTPKALIFVSHGAGEHSGRYEELARMLMGLDLLVF 73
Query: 113 MLSYRGYGESDG----YPSQHGITRDAQAALEHL-SQRTDIDTTRIVVFGRSLGGAVGAV 167
+ G+G+S+G H RD L+H+ S + D + + G S+GGA+ +
Sbjct: 74 AHDHVGHGQSEGERMVVSDFHVFVRD---VLQHVDSMQKDYPGLPVFLLGHSMGGAIAIL 130
Query: 168 LTKNNPDKVAALIL 181
P A ++L
Sbjct: 131 TAAERPGHFAGMVL 144
>pdb|3OM8|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
pdb|3OM8|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
Length = 266
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
Query: 58 WLRSSDGVRLHAWFIKLFPDCRGPTILFFQENAGNIAHRLEMVRIMLQRLHCNVFMLSYR 117
+L +SDG L +L P +L + G H + L R H V R
Sbjct: 8 FLATSDGASLA---YRLDGAAEKP-LLALSNSIGTTLHXWDAQLPALTR-HFRVLRYDAR 62
Query: 118 GYGESDGYPSQHGITRDAQAALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLTKNNPDKVA 177
G+G S P + + R + LE L ++ R G SLGG VG L + P ++
Sbjct: 63 GHGASSVPPGPYTLARLGEDVLELLDA---LEVRRAHFLGLSLGGIVGQWLALHAPQRIE 119
Query: 178 ALILENT 184
L+L NT
Sbjct: 120 RLVLANT 126
>pdb|2XLB|A Chain A, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|B Chain B, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|C Chain C, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|D Chain D, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|E Chain E, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|F Chain F, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|G Chain G, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|H Chain H, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|I Chain I, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|J Chain J, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|K Chain K, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|L Chain L, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
Length = 320
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 6/125 (4%)
Query: 130 GITRDAQAALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLTKNN--PDKVAA-LILENTFT 186
G+ DA ALE + ++D RI V G S GGA+ + P V A + F
Sbjct: 152 GVYLDAVRALEVIQSFPEVDEHRIGVIGGSQGGALAIAAAALSDIPKVVVADYPYLSNFE 211
Query: 187 SILDMAGVLLPFLKWFIGGSGSKGPRILN--FLVRSPWSTIDVVGEIKQPILFLSGLQDE 244
+D+A + P+L+ + P + F S + I++ G +KQP L GL D+
Sbjct: 212 RAVDVA-LEQPYLEINSYFRRNSDPEVEEKAFETLSYFDLINLAGWVKQPTLMAIGLIDQ 270
Query: 245 MVPPS 249
+ PPS
Sbjct: 271 VTPPS 275
>pdb|1QTR|A Chain A, Crystal Structure Analysis Of The Prolyl Aminopeptidase
From Serratia Marcescens
pdb|1WM1|A Chain A, Crystal Structure Of Prolyl Aminopeptidase, Complex With
Pro-tboda
pdb|1X2B|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Sar-Tboda
pdb|1X2E|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Ala-Tboda
Length = 317
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 8/134 (5%)
Query: 54 YEDVWLRSSDGVRLHAWFIKLFPDCRGPTILFFQENAGNIAHRLEMVRIMLQRLHCNVFM 113
Y+ WL + DG R++ W + P+ + P + G I+ R + V +
Sbjct: 14 YDSGWLDTGDGHRIY-WELSGNPNGK-PAVFIHGGPGGGIS---PHHRQLFDPERYKVLL 68
Query: 114 LSYRGYGESDGYPS-QHGITRDAQAALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLTKNN 172
RG G S + S + T A +E L + ++ + +VFG S G + + +
Sbjct: 69 FDQRGCGRSRPHASLDNNTTWHLVADIERLREMAGVE--QWLVFGGSWGSTLALAYAQTH 126
Query: 173 PDKVAALILENTFT 186
P++V+ ++L FT
Sbjct: 127 PERVSEMVLRGIFT 140
>pdb|2XLC|A Chain A, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
To Paraoxon
pdb|2XLC|B Chain B, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
To Paraoxon
pdb|2XLC|C Chain C, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
To Paraoxon
pdb|2XLC|D Chain D, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
To Paraoxon
pdb|2XLC|E Chain E, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
To Paraoxon
pdb|2XLC|F Chain F, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
To Paraoxon
Length = 320
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 6/131 (4%)
Query: 130 GITRDAQAALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLTKNN--PDKVAA-LILENTFT 186
G+ DA ALE + ++D RI V G S GGA+ + P V A + F
Sbjct: 152 GVYLDAVRALEVIQSFPEVDEHRIGVIGGSQGGALAIAAAALSDIPKVVVADYPYLSNFE 211
Query: 187 SILDMAGVLLPFLKWFIGGSGSKGPRILN--FLVRSPWSTIDVVGEIKQPILFLSGLQDE 244
+D+A + P+L+ + P + F S + I++ G +KQP L GL D+
Sbjct: 212 RAVDVA-LEQPYLEINSYFRRNSDPEVEEKAFETLSYFDLINLAGWVKQPTLXAIGLIDQ 270
Query: 245 MVPPSHMQMLY 255
+ PPS + Y
Sbjct: 271 VTPPSTVFAAY 281
>pdb|3KSR|A Chain A, Crystal Structure Of A Putative Serine Hydrolase (Xcc3885)
From Xanthomonas Campestris Pv. Campestris At 2.69 A
Resolution
Length = 290
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 81 PTILFFQENAGNIAHRLEMVRIMLQRLHCNVFMLSYRGYGESDGYPS-QHGITR-----D 134
P +LF G+ H L R + L C RG+ +GY S + +TR D
Sbjct: 29 PGVLFVHGWGGSQHHSLVRAREAVG-LGCICXTFDLRGH---EGYASXRQSVTRAQNLDD 84
Query: 135 AQAALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLTKNNP 173
+AA + L+ +D I V G S GG + A+LT+ P
Sbjct: 85 IKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRERP 123
>pdb|1L7A|A Chain A, Structural Genomics, Crystal Structure Of Cephalosporin C
Deacetylase
pdb|1L7A|B Chain B, Structural Genomics, Crystal Structure Of Cephalosporin C
Deacetylase
Length = 318
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 92/226 (40%), Gaps = 35/226 (15%)
Query: 51 RLIYEDVWLRSSDGVRLHAWFIKLFPDCRGPTILFFQENAGNIAHRLEMVRIMLQRLH-C 109
RL Y +S R+ W+ PD GP + + N ++ E+ ++ LH
Sbjct: 58 RLTY-----KSFGNARITGWYA--VPDKEGPHPAIVKYHGYNASYDGEIHEMVNWALHGY 110
Query: 110 NVFMLSYRGYGESDGY---PSQH------------------GITRDAQAALEHLSQRTDI 148
F + RG S+ P H G+ DA ALE +S ++
Sbjct: 111 ATFGMLVRGQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEV 170
Query: 149 DTTRIVVFGRSLGGAV---GAVLTKNNPDKVAALILENTFTSILDMAGVLLPFLKW--FI 203
D TRI V G S GG + A L+ VA + F +D+A + P+L+ F
Sbjct: 171 DETRIGVTGGSQGGGLTIAAAALSDIPKAAVADYPYLSNFERAIDVA-LEQPYLEINSFF 229
Query: 204 GGSGSKGPRILNFLVRSPWSTIDVVGEIKQPILFLSGLQDEMVPPS 249
+GS + S + +++ +K P+L GL D++ PPS
Sbjct: 230 RRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVTPPS 275
>pdb|3M81|A Chain A, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.50 A Resolution (Native Apo
Structure)
pdb|3M81|B Chain B, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.50 A Resolution (Native Apo
Structure)
pdb|3M81|C Chain C, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.50 A Resolution (Native Apo
Structure)
pdb|3M81|D Chain D, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.50 A Resolution (Native Apo
Structure)
pdb|3M81|E Chain E, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.50 A Resolution (Native Apo
Structure)
pdb|3M81|F Chain F, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.50 A Resolution (Native Apo
Structure)
Length = 337
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 4/125 (3%)
Query: 134 DAQAALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLTKNNPDKVAALILENTFTSILDMAG 193
DA A+E + +D RIV+ G S GG + ++ + K AL+ + F A
Sbjct: 175 DAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALS-KKAKALLCDVPFLCHFRRAV 233
Query: 194 VLL---PFLKWFIGGSGSKGPRILNFLVRSPWSTIDVVGEIKQPILFLSGLQDEMVPPSH 250
L+ P+ + + + F S + ++ K P LF GL D + PPS
Sbjct: 234 QLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDNICPPST 293
Query: 251 MQMLY 255
+ Y
Sbjct: 294 VFAAY 298
>pdb|1VLQ|A Chain A, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.10 A Resolution
pdb|1VLQ|B Chain B, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.10 A Resolution
pdb|1VLQ|C Chain C, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.10 A Resolution
pdb|1VLQ|D Chain D, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.10 A Resolution
pdb|1VLQ|E Chain E, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.10 A Resolution
pdb|1VLQ|F Chain F, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.10 A Resolution
pdb|1VLQ|G Chain G, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.10 A Resolution
pdb|1VLQ|H Chain H, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.10 A Resolution
pdb|1VLQ|I Chain I, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.10 A Resolution
pdb|1VLQ|J Chain J, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.10 A Resolution
pdb|1VLQ|K Chain K, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.10 A Resolution
pdb|1VLQ|L Chain L, Crystal Structure Of Acetyl Xylan Esterase (Tm0077) From
Thermotoga Maritima At 2.10 A Resolution
Length = 337
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 4/125 (3%)
Query: 134 DAQAALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLTKNNPDKVAALILENTFTSILDMAG 193
DA A+E + +D RIV+ G S GG + ++ + K AL+ + F A
Sbjct: 175 DAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALS-KKAKALLCDVPFLCHFRRAV 233
Query: 194 VLL---PFLKWFIGGSGSKGPRILNFLVRSPWSTIDVVGEIKQPILFLSGLQDEMVPPSH 250
L+ P+ + + + F S + ++ K P LF GL D + PPS
Sbjct: 234 QLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLXDNICPPST 293
Query: 251 MQMLY 255
+ Y
Sbjct: 294 VFAAY 298
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 11/134 (8%)
Query: 54 YEDV-WLRSSDGVRLHAWFIKLFPDCRGPTILFFQENAGNIAHRLEMVRIMLQRLHCNVF 112
Y+D+ L ++DG L + K P ++F AG + R E + L L VF
Sbjct: 33 YQDLPHLVNADGQYLFCRYWK--PTGTPKALIFVSHGAGEHSGRYEELARXLXGLDLLVF 90
Query: 113 MLSYRGYGESDG----YPSQHGITRDAQAALEHL-SQRTDIDTTRIVVFGRSLGGAVGAV 167
+ G+G+S+G H RD L+H+ S + D + + G S GGA+ +
Sbjct: 91 AHDHVGHGQSEGERXVVSDFHVFVRD---VLQHVDSXQKDYPGLPVFLLGHSXGGAIAIL 147
Query: 168 LTKNNPDKVAALIL 181
P A +L
Sbjct: 148 TAAERPGHFAGXVL 161
>pdb|3AZO|A Chain A, Crystal Structure Of Puromycin Hydrolase
pdb|3AZO|B Chain B, Crystal Structure Of Puromycin Hydrolase
Length = 662
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 85/246 (34%), Gaps = 59/246 (23%)
Query: 61 SSDGVRLHAW-FIKLFPDCRGPT---ILFFQENAGNIAHRLEMVRIMLQRLHCNVFMLSY 116
+ DG +HA + PD GP + G R+ V L +V +
Sbjct: 398 APDGREIHAHIYPPHSPDFTGPADELPPYVVXAHGGPTSRVPAV------LDLDVAYFTS 451
Query: 117 RG-------YGESDGYPSQH--------GIT--RDAQAALEHLSQRTDIDTTRIVVFGRS 159
RG YG S GY + G+ D A L++ D R+ V G S
Sbjct: 452 RGIGVADVNYGGSTGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGS 511
Query: 160 LGGAVGAVLTKNNPDKVAALILENTFTSILDMAGVLLPFLK---WFIGGSGSKGPRILNF 216
GG A ++L+ T + VL P L W GG+ R L+F
Sbjct: 512 AGGWTAA----------SSLV----STDVYACGTVLYPVLDLLGWADGGTHDFESRYLDF 557
Query: 217 LV------------RSPWSTIDVVGEIKQPILFLSGLQDEMVPPSHMQMLYAKAAARNKH 264
L+ R+P + D ++ P L L GL+D + PP A
Sbjct: 558 LIGSFEEFPERYRDRAPLTRAD---RVRVPFLLLQGLEDPVCPPEQCDRFLEAVAGCGVP 614
Query: 265 CKFVEF 270
++ F
Sbjct: 615 HAYLSF 620
>pdb|1ODT|C Chain C, Cephalosporin C Deacetylase Mutated, In Complex With
Acetate
pdb|1ODT|H Chain H, Cephalosporin C Deacetylase Mutated, In Complex With
Acetate
Length = 318
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 92/226 (40%), Gaps = 35/226 (15%)
Query: 51 RLIYEDVWLRSSDGVRLHAWFIKLFPDCRGPTILFFQENAGNIAHRLEMVRIMLQRLH-C 109
RL Y +S R+ W+ PD GP + + N ++ E+ ++ LH
Sbjct: 58 RLTY-----KSFGNARITGWYA--VPDKEGPHPAIVKYHGYNASYDGEIHEMVNWALHGY 110
Query: 110 NVFMLSYRGYGESDGY---PSQH------------------GITRDAQAALEHLSQRTDI 148
F + RG S+ P H G+ DA ALE +S ++
Sbjct: 111 ATFGMLVRGQQSSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEV 170
Query: 149 DTTRIVVFGRSLGGAV---GAVLTKNNPDKVAALILENTFTSILDMAGVLLPFLK--WFI 203
D TRI V G + GG + A L+ VA + F +D+A + P+L+ F
Sbjct: 171 DETRIGVTGGAQGGGLTIAAAALSDIPKAAVADYPYLSNFERAIDVA-LEEPYLEINSFF 229
Query: 204 GGSGSKGPRILNFLVRSPWSTIDVVGEIKQPILFLSGLQDEMVPPS 249
+GS + S + +++ +K P+L GL D++ PPS
Sbjct: 230 RRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVTPPS 275
>pdb|4B9A|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa.
pdb|4B9E|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa, With Bound Mfa
Length = 301
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 110 NVFMLSYRGYGESDGYPSQHGITRDAQAALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLT 169
+V + RGYGES + A A + L + R V G G VG L
Sbjct: 59 SVVLADLRGYGESRALDEEGADYSKAALARDQLETMGQLGFERFAVIGHDRGARVGYRLA 118
Query: 170 KNNPDKVAALILENTFTSILD 190
++P VAA + T ILD
Sbjct: 119 LDHPQAVAAFV-SLTVVPILD 138
>pdb|3F67|A Chain A, Crystal Structure Of Putative Dienelactone Hydrolase From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
Length = 241
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 77/210 (36%), Gaps = 45/210 (21%)
Query: 81 PTILFFQENAGNIAHRLEMVRIMLQRLHCNVFMLSYRGYGESDGYPSQHGITR------- 133
P ++ QE G H ++ R + Q + + Y G+ + Y H I
Sbjct: 33 PIVIVVQEIFGVHEHIRDLCRRLAQEGYLAIAPELYFRQGDPNEY---HDIPTLFKELVS 89
Query: 134 ---DAQ--AALEHLSQ---RTDIDTTRIVVFGRSLGGAVGAVLTKNNPDKVAALILENTF 185
DAQ A L+H++ R D R+++ G GG + + +NP AA+
Sbjct: 90 KVPDAQVLADLDHVASWAARHGGDAHRLLITGFCWGGRITWLYAAHNPQLKAAV------ 143
Query: 186 TSILDMAGVLLPFLKWFIGGSGSKGPRILNFLVRSPWSTIDVVGEIKQPILFLSGLQDEM 245
W+ G K + SP +D+ ++ P+L L G +D
Sbjct: 144 --------------AWYGKLVGEKS-------LNSPKHPVDIAVDLNAPVLGLYGAKDAS 182
Query: 246 VPPSHMQMLYAKAAARNKHCKFVEFPTGMH 275
+P ++ A N + V +P H
Sbjct: 183 IPQDTVETXRQALRAANATAEIVVYPEADH 212
>pdb|1ODS|A Chain A, Cephalosporin C Deacetylase From Bacillus Subtilis
pdb|1ODS|B Chain B, Cephalosporin C Deacetylase From Bacillus Subtilis
pdb|1ODS|C Chain C, Cephalosporin C Deacetylase From Bacillus Subtilis
pdb|1ODS|D Chain D, Cephalosporin C Deacetylase From Bacillus Subtilis
pdb|1ODS|E Chain E, Cephalosporin C Deacetylase From Bacillus Subtilis
pdb|1ODS|F Chain F, Cephalosporin C Deacetylase From Bacillus Subtilis
pdb|1ODS|G Chain G, Cephalosporin C Deacetylase From Bacillus Subtilis
pdb|1ODS|H Chain H, Cephalosporin C Deacetylase From Bacillus Subtilis
Length = 318
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 92/226 (40%), Gaps = 35/226 (15%)
Query: 51 RLIYEDVWLRSSDGVRLHAWFIKLFPDCRGPTILFFQENAGNIAHRLEMVRIMLQRLH-C 109
RL Y +S R+ W+ PD GP + + N ++ E+ ++ LH
Sbjct: 58 RLTY-----KSFGNARITGWYA--VPDKEGPHPAIVKYHGYNASYDGEIHEMVNWALHGY 110
Query: 110 NVFMLSYRGYGESDGY---PSQH------------------GITRDAQAALEHLSQRTDI 148
F + RG S+ P H G+ DA ALE +S ++
Sbjct: 111 ATFGMLVRGQQSSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEV 170
Query: 149 DTTRIVVFGRSLGGAV---GAVLTKNNPDKVAALILENTFTSILDMAGVLLPFLKW--FI 203
D TRI V G S GG + A L+ VA + F +D+A + P+L+ F
Sbjct: 171 DETRIGVTGGSQGGGLTIAAAALSDIPKAAVADYPYLSNFERAIDVA-LEEPYLEINSFF 229
Query: 204 GGSGSKGPRILNFLVRSPWSTIDVVGEIKQPILFLSGLQDEMVPPS 249
+GS + S + +++ +K P+L GL D++ PPS
Sbjct: 230 RRNGSPETEVQAMKTLSYFDIMNLAYRVKVPVLMSIGLIDKVTPPS 275
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 103/259 (39%), Gaps = 33/259 (12%)
Query: 61 SSDGVRLHAWFI--KLFPDCRGPTILFFQENAGNIAHR-LEMVRIMLQRLHCNVFMLSYR 117
DG++L+A+ K P+ + P + G+ R + V+ L +
Sbjct: 7 DCDGIKLNAYLDMPKNNPE-KCPLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMY 65
Query: 118 GYGESDGYPSQHGITRDAQAALEHLSQRTDID-TTRIVVFGRSLGGAVGAVLTKNNPDKV 176
G+G+SDG H + + L + +D T I + G S GG + D +
Sbjct: 66 GHGKSDGKFEDHTLFKWLTNILAVVDYAKKLDFVTDIYMAGHSQGGLSVMLAAAMERDII 125
Query: 177 AALILENTFTSILDMA--GVLL-----------PFLKWFIGGSGSKGPRILNFL-VRSPW 222
ALI + I ++A G LL W G KG N++ V
Sbjct: 126 KALIPLSPAAMIPEIARTGELLGLKFDPENIPDELDAW--DGRKLKG----NYVRVAQTI 179
Query: 223 STIDVVGEIKQPILFLSGLQDEMVPPSHMQMLYAKAAARNKHCKFVEFPTGMHM-DTWLA 281
D V + +P+L + G QDE V P + ++K + K+CK V P H D L
Sbjct: 180 RVEDFVDKYTKPVLIVHGDQDEAV-PYEASVAFSK---QYKNCKLVTIPGDTHCYDHHL- 234
Query: 282 GGDQYWRSIQEFLAEHVRK 300
+ +++EF+ E + K
Sbjct: 235 --ELVTEAVKEFMLEQIAK 251
>pdb|4AX4|A Chain A, Prolyl Oligopeptidase From Porcine Brain, H680a Mutant
Length = 710
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 31/167 (18%)
Query: 134 DAQAALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLTKNNPDKVAALILENTFTSILDMAG 193
D Q A E+L + R+ + G S GG + A PD +I + ++DM
Sbjct: 529 DFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQ---VGVMDM-- 583
Query: 194 VLLPFLKWFIGGS------GSKGPRILNFLVR-SPWSTIDV--VGEIKQP-ILFLSGLQD 243
L F K+ IG + S + +L++ SP + + +I+ P +L L+ D
Sbjct: 584 --LKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHD 641
Query: 244 EMVPPSH-------MQMLYAKAAARNKHCKFVEFPTGMHMDTWLAGG 283
+ V P H +Q + ++ +N P +H+DT G
Sbjct: 642 DRVVPLHSLKFIATLQYIVGRSRKQNN-------PLLIHVDTKAGAG 681
>pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552
Length = 709
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 31/162 (19%)
Query: 134 DAQAALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLTKNNPDKVAALILENTFTSILDMAG 193
D Q A E+L + R+ + G S GG + A PD +I + ++DM
Sbjct: 528 DFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVAACANQRPDLFGCVIAQ---VGVMDM-- 582
Query: 194 VLLPFLKWFIGGS------GSKGPRILNFLVR-SPWSTIDV--VGEIKQP-ILFLSGLQD 243
L F K+ IG + S + +LV+ SP + + +I+ P +L L+ D
Sbjct: 583 --LKFHKYTIGHAWTTDYGCSDSKQHFEWLVKYSPLHNVKLPEADDIQYPSMLLLTADHD 640
Query: 244 EMVPPSH-------MQMLYAKAAARNKHCKFVEFPTGMHMDT 278
+ V P H +Q + ++ +N P +H+DT
Sbjct: 641 DRVVPLHSLKFIATLQYIVGRSRKQNN-------PLLIHVDT 675
>pdb|1VZ3|A Chain A, Prolyl Oligopeptidase From Porcine Brain, T597c Mutant
Length = 710
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 31/162 (19%)
Query: 134 DAQAALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLTKNNPDKVAALILENTFTSILDMAG 193
D Q A E+L + R+ + G S GG + A PD +I + ++DM
Sbjct: 529 DFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQ---VGVMDM-- 583
Query: 194 VLLPFLKWFIGGS------GSKGPRILNFLVR-SPWSTIDV--VGEIKQP-ILFLSGLQD 243
L F K+ IG + S + +L++ SP + + +I+ P +L L+ D
Sbjct: 584 --LKFHKYTIGHAWTCDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHD 641
Query: 244 EMVPPSH-------MQMLYAKAAARNKHCKFVEFPTGMHMDT 278
+ V P H +Q + ++ +N P +H+DT
Sbjct: 642 DRVVPLHSLKFIATLQYIVGRSRKQNN-------PLLIHVDT 676
>pdb|1VZ2|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y73c/v427c/c255t
Mutant
Length = 710
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 31/162 (19%)
Query: 134 DAQAALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLTKNNPDKVAALILENTFTSILDMAG 193
D Q A E+L + R+ + G S GG + A PD +I + ++DM
Sbjct: 529 DFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQ---VGVMDM-- 583
Query: 194 VLLPFLKWFIGGS------GSKGPRILNFLVR-SPWSTIDV--VGEIKQP-ILFLSGLQD 243
L F K+ IG + S + +L++ SP + + +I+ P +L L+ D
Sbjct: 584 --LKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHD 641
Query: 244 EMVPPSH-------MQMLYAKAAARNKHCKFVEFPTGMHMDT 278
+ V P H +Q + ++ +N P +H+DT
Sbjct: 642 DRVVPLHSLKFIATLQYIVGRSRKQNN-------PLLIHVDT 676
>pdb|1E5T|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant
Length = 710
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 31/162 (19%)
Query: 134 DAQAALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLTKNNPDKVAALILENTFTSILDMAG 193
D Q A E+L + R+ + G S GG + A PD +I + ++DM
Sbjct: 529 DFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQ---VGVMDM-- 583
Query: 194 VLLPFLKWFIGGS------GSKGPRILNFLVR-SPWSTIDV--VGEIKQP-ILFLSGLQD 243
L F K+ IG + S + +L++ SP + + +I+ P +L L+ D
Sbjct: 584 --LKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHD 641
Query: 244 EMVPPSH-------MQMLYAKAAARNKHCKFVEFPTGMHMDT 278
+ V P H +Q + ++ +N P +H+DT
Sbjct: 642 DRVVPLHSLKFIATLQYIVGRSRKQNN-------PLLIHVDT 676
>pdb|1H2X|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
pdb|1H2Y|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
With Covalently Bound Inhibitor Z-Pro-Prolinal
Length = 710
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 31/162 (19%)
Query: 134 DAQAALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLTKNNPDKVAALILENTFTSILDMAG 193
D Q A E+L + R+ + G S GG + A PD +I + ++DM
Sbjct: 529 DFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQ---VGVMDM-- 583
Query: 194 VLLPFLKWFIGGS------GSKGPRILNFLVR-SPWSTIDV--VGEIKQP-ILFLSGLQD 243
L F K+ IG + S + +L++ SP + + +I+ P +L L+ D
Sbjct: 584 --LKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHD 641
Query: 244 EMVPPSH-------MQMLYAKAAARNKHCKFVEFPTGMHMDT 278
+ V P H +Q + ++ +N P +H+DT
Sbjct: 642 DRVVPLHSLKFIATLQYIVGRSRKQNN-------PLLIHVDT 676
>pdb|1QFS|A Chain A, Prolyl Oligopeptidase From Porcine Muscle With Covalently
Bound Inhibitor Z-Pro-Prolinal
pdb|1H2W|A Chain A, Prolyl Oligopeptidase From Porcine Brain
pdb|3EQ7|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ8|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ9|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|2XDW|A Chain A, Inhibition Of Prolyl Oligopeptidase With A Synthetic
Unnatural Dipeptide
pdb|4AMY|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-1
pdb|4AMZ|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-2
pdb|4AN0|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-3
pdb|4AN1|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-4
Length = 710
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 31/162 (19%)
Query: 134 DAQAALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLTKNNPDKVAALILENTFTSILDMAG 193
D Q A E+L + R+ + G S GG + A PD +I + ++DM
Sbjct: 529 DFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQ---VGVMDM-- 583
Query: 194 VLLPFLKWFIGGS------GSKGPRILNFLVR-SPWSTIDV--VGEIKQP-ILFLSGLQD 243
L F K+ IG + S + +L++ SP + + +I+ P +L L+ D
Sbjct: 584 --LKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHD 641
Query: 244 EMVPPSH-------MQMLYAKAAARNKHCKFVEFPTGMHMDT 278
+ V P H +Q + ++ +N P +H+DT
Sbjct: 642 DRVVPLHSLKFIATLQYIVGRSRKQNN-------PLLIHVDT 676
>pdb|1QFM|A Chain A, Prolyl Oligopeptidase From Porcine Muscle
Length = 710
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 31/162 (19%)
Query: 134 DAQAALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLTKNNPDKVAALILENTFTSILDMAG 193
D Q A E+L + R+ + G S GG + A PD +I + ++DM
Sbjct: 529 DFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQ---VGVMDM-- 583
Query: 194 VLLPFLKWFIGGS------GSKGPRILNFLVR-SPWSTIDV--VGEIKQP-ILFLSGLQD 243
L F K+ IG + S + +L++ SP + + +I+ P +L L+ D
Sbjct: 584 --LKFHKYTIGHAWTTDYGXSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHD 641
Query: 244 EMVPPSH-------MQMLYAKAAARNKHCKFVEFPTGMHMDT 278
+ V P H +Q + ++ +N P +H+DT
Sbjct: 642 DRVVPLHSLKFIATLQYIVGRSRKQNN-------PLLIHVDT 676
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 77/207 (37%), Gaps = 32/207 (15%)
Query: 63 DGVRLHAWFIKLFPDCRGPTILFFQENAGNIAHRLEMVRIMLQRLHCNVFMLSYRGYGES 122
DG++L + F + I+F A L + L+ + + G+G+S
Sbjct: 30 DGLQLVGTREEPFGEIYDMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDS 89
Query: 123 DGYPSQHGI---TRDAQAALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLTKNNPDKVAAL 179
DG + DA A L ++ +TD I + G S GG V ++L PD + +
Sbjct: 90 DGKFENMTVLNEIEDANAILNYV--KTDPHVRNIYLVGHSQGGVVASMLAGLYPDLIKKV 147
Query: 180 IL-------------ENT--FTSILDMAGVLLPFLKWFIGGSGSKGPRILNFLVR--SPW 222
+L NT T D LPF +GG F +R
Sbjct: 148 VLLAPAATLKGDALEGNTQGVTYNPDHIPDRLPFKDLTLGG----------FYLRIAQQL 197
Query: 223 STIDVVGEIKQPILFLSGLQDEMVPPS 249
+V + +P+ + G D +V P+
Sbjct: 198 PIYEVSAQFTKPVCLIHGTDDTVVSPN 224
>pdb|1E8M|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Inhibitor
pdb|1E8N|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Peptide
pdb|1UOO|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Arg-Pro
pdb|1UOP|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Glu-Pro
pdb|1UOQ|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Glu-Phe-Ser-Pro
pdb|1H2Z|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 31/162 (19%)
Query: 134 DAQAALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLTKNNPDKVAALILENTFTSILDMAG 193
D Q A E+L + R+ + G + GG + A PD +I + ++DM
Sbjct: 529 DFQCAAEYLIKEGYTSPKRLTINGGANGGLLVATCANQRPDLFGCVIAQ---VGVMDM-- 583
Query: 194 VLLPFLKWFIGGS------GSKGPRILNFLVR-SPWSTIDV--VGEIKQP-ILFLSGLQD 243
L F K+ IG + S + +L++ SP + + +I+ P +L L+ D
Sbjct: 584 --LKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHD 641
Query: 244 EMVPPSH-------MQMLYAKAAARNKHCKFVEFPTGMHMDT 278
+ V P H +Q + ++ +N P +H+DT
Sbjct: 642 DRVVPLHSLKFIATLQYIVGRSRKQNN-------PLLIHVDT 676
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 72/189 (38%), Gaps = 50/189 (26%)
Query: 121 ESDGYPSQHGITRDAQA------ALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLTKNNPD 174
+S G+ + D Q A++ L DID +V G S+GGA PD
Sbjct: 70 DSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDIDRAHLV--GNSMGGATALNFALEYPD 127
Query: 175 KVAALILEN------TFTSILDMAGVLLPF--------------LKWFIGGSG------- 207
++ LIL + + + M G+ L F L+ F+
Sbjct: 128 RIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSLITEELL 187
Query: 208 -------SKGPRIL-NFLV---RSPWSTIDV---VGEIKQPILFLSGLQDEMVPPSH-MQ 252
+ P L NFL+ ++P ST DV +GEIK G D VP H ++
Sbjct: 188 QGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLK 247
Query: 253 MLYAKAAAR 261
+L+ AR
Sbjct: 248 LLWNIDDAR 256
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 72/189 (38%), Gaps = 50/189 (26%)
Query: 121 ESDGYPSQHGITRDAQA------ALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLTKNNPD 174
+S G+ + D Q A++ L DID +V G S+GGA PD
Sbjct: 70 DSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDIDRAHLV--GNSMGGATALNFALEYPD 127
Query: 175 KVAALILEN------TFTSILDMAGVLLPF--------------LKWFIGGSG------- 207
++ LIL + + + M G+ L F L+ F+
Sbjct: 128 RIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSLITEELL 187
Query: 208 -------SKGPRIL-NFLV---RSPWSTIDV---VGEIKQPILFLSGLQDEMVPPSH-MQ 252
+ P L NFL+ ++P ST DV +GEIK G D VP H ++
Sbjct: 188 QGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLK 247
Query: 253 MLYAKAAAR 261
+L+ AR
Sbjct: 248 LLWNIDDAR 256
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 222 WSTIDVVGEIKQPILFLSGLQDEMVPPS------HMQMLYAKAAARNKHCKFVEFP 271
WS ID + ++ P+L ++G DE P + H+ + + HC +E P
Sbjct: 253 WSVIDRLPDVTAPVLVIAGEHDEATPKTWQPFVDHIPDVRSHVFPGTSHCTHLEKP 308
>pdb|1O6G|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641n Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 31/162 (19%)
Query: 134 DAQAALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLTKNNPDKVAALILENTFTSILDMAG 193
D Q A E+L + R+ + G S GG + A PD +I + ++DM
Sbjct: 529 DFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQ---VGVMDM-- 583
Query: 194 VLLPFLKWFIGGS------GSKGPRILNFLVR-SPWSTIDV--VGEIKQP-ILFLSGLQD 243
L F K+ IG + S + +L++ SP + + +I+ P +L L+ +
Sbjct: 584 --LKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHN 641
Query: 244 EMVPPSH-------MQMLYAKAAARNKHCKFVEFPTGMHMDT 278
+ V P H +Q + ++ +N P +H+DT
Sbjct: 642 DRVVPLHSLKFIATLQYIVGRSRKQNN-------PLLIHVDT 676
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 77/207 (37%), Gaps = 32/207 (15%)
Query: 63 DGVRLHAWFIKLFPDCRGPTILFFQENAGNIAHRLEMVRIMLQRLHCNVFMLSYRGYGES 122
DG++L + F + I+F A L + L+ + + G+G+S
Sbjct: 30 DGLQLVGTREEPFGEIYDMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDS 89
Query: 123 DGYPSQHGI---TRDAQAALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLTKNNPDKVAAL 179
DG + DA A L ++ +TD I + G + GG V ++L PD + +
Sbjct: 90 DGKFENMTVLNEIEDANAILNYV--KTDPHVRNIYLVGHAQGGVVASMLAGLYPDLIKKV 147
Query: 180 IL-------------ENT--FTSILDMAGVLLPFLKWFIGGSGSKGPRILNFLVR--SPW 222
+L NT T D LPF +GG F +R
Sbjct: 148 VLLAPAATLKGDALEGNTQGVTYNPDHIPDRLPFKDLTLGG----------FYLRIAQQL 197
Query: 223 STIDVVGEIKQPILFLSGLQDEMVPPS 249
+V + +P+ + G D +V P+
Sbjct: 198 PIYEVSAQFTKPVCLIHGTDDTVVSPN 224
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 77/207 (37%), Gaps = 32/207 (15%)
Query: 63 DGVRLHAWFIKLFPDCRGPTILFFQENAGNIAHRLEMVRIMLQRLHCNVFMLSYRGYGES 122
DG++L + F + I+F A L + L+ + + G+G+S
Sbjct: 30 DGLQLVGTREEPFGEIYDMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDS 89
Query: 123 DGYPSQHGI---TRDAQAALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLTKNNPDKVAAL 179
DG + DA A L ++ +TD I + G + GG V ++L PD + +
Sbjct: 90 DGKFENMTVLNEIEDANAILNYV--KTDPHVRNIYLVGHAQGGVVASMLAGLYPDLIKKV 147
Query: 180 IL-------------ENT--FTSILDMAGVLLPFLKWFIGGSGSKGPRILNFLVR--SPW 222
+L NT T D LPF +GG F +R
Sbjct: 148 VLLAPAATLKGDALEGNTQGVTYNPDHIPDRLPFKDLTLGG----------FYLRIAQQL 197
Query: 223 STIDVVGEIKQPILFLSGLQDEMVPPS 249
+V + +P+ + G D +V P+
Sbjct: 198 PIYEVSAQFTKPVCLIHGTDDTVVSPN 224
>pdb|3AZP|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZP|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZQ|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
pdb|3AZQ|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
Length = 662
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 18/100 (18%)
Query: 186 TSILDMAGVLLPFLK---WFIGGSGSKGPRILNFLV------------RSPWSTIDVVGE 230
T + VL P L W GG+ R L+FL+ R+P + D
Sbjct: 524 TDVYACGTVLYPVLDLLGWADGGTHDFESRYLDFLIGSFEEFPERYRDRAPLTRAD---R 580
Query: 231 IKQPILFLSGLQDEMVPPSHMQMLYAKAAARNKHCKFVEF 270
++ P L L GL+D + PP A ++ F
Sbjct: 581 VRVPFLLLQGLEDPVCPPEQCDRFLEAVAGCGVPHAYLSF 620
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 72/189 (38%), Gaps = 50/189 (26%)
Query: 121 ESDGYPSQHGITRDAQA------ALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLTKNNPD 174
+S G+ + D Q A++ L DID +V G ++GGA PD
Sbjct: 70 DSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDIDRAHLV--GNAMGGATALNFALEYPD 127
Query: 175 KVAALILEN------TFTSILDMAGVLLPF--------------LKWFIGGSG------- 207
++ LIL + + + M G+ L F L+ F+
Sbjct: 128 RIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSLITEELL 187
Query: 208 -------SKGPRIL-NFLV---RSPWSTIDV---VGEIKQPILFLSGLQDEMVPPSH-MQ 252
+ P L NFL+ ++P ST DV +GEIK G D VP H ++
Sbjct: 188 QGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLK 247
Query: 253 MLYAKAAAR 261
+L+ AR
Sbjct: 248 LLWNIDDAR 256
>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
Complex With Its Substrate Hopda
Length = 286
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 72/189 (38%), Gaps = 50/189 (26%)
Query: 121 ESDGYPSQHGITRDAQA------ALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLTKNNPD 174
+S G+ + D Q A++ L DID +V G ++GGA PD
Sbjct: 70 DSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDIDRAHLV--GNAMGGATALNFALEYPD 127
Query: 175 KVAALILEN------TFTSILDMAGVLLPF--------------LKWFIGGSG------- 207
++ LIL + + + M G+ L F L+ F+
Sbjct: 128 RIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSLITEELL 187
Query: 208 -------SKGPRIL-NFLV---RSPWSTIDV---VGEIKQPILFLSGLQDEMVPPSH-MQ 252
+ P L NFL+ ++P ST DV +GEIK G D VP H ++
Sbjct: 188 QGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLK 247
Query: 253 MLYAKAAAR 261
+L+ AR
Sbjct: 248 LLWNIDDAR 256
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 69/189 (36%), Gaps = 50/189 (26%)
Query: 121 ESDGYPSQHGITRDAQA------ALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLTKNNPD 174
+S G+ + D Q A++ L DID +V G ++GGA PD
Sbjct: 67 DSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDIDRAHLV--GNAMGGATALNFALEYPD 124
Query: 175 KVAALIL---------------------------ENTFTSILDMAGVLL--------PFL 199
++ LIL E ++ ++ M V L L
Sbjct: 125 RIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSLITEELL 184
Query: 200 KWFIGGSGSKGPRILNFLV---RSPWSTIDV---VGEIKQPILFLSGLQDEMVPPSH-MQ 252
+ + + NFL+ ++P ST DV +GEIK G D VP H ++
Sbjct: 185 QGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLK 244
Query: 253 MLYAKAAAR 261
+L+ AR
Sbjct: 245 LLWNIDDAR 253
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 72/189 (38%), Gaps = 50/189 (26%)
Query: 121 ESDGYPSQHGITRDAQA------ALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLTKNNPD 174
+S G+ + D Q A++ L DID +V G ++GGA PD
Sbjct: 70 DSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDIDRAHLV--GNAMGGATALNFALEYPD 127
Query: 175 KVAALILEN------TFTSILDMAGVLLPF--------------LKWFIGGSG------- 207
++ LIL + + + M G+ L F L+ F+
Sbjct: 128 RIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSLITEELL 187
Query: 208 -------SKGPRIL-NFLV---RSPWSTIDV---VGEIKQPILFLSGLQDEMVPPSH-MQ 252
+ P L NFL+ ++P ST DV +GEIK G D VP H ++
Sbjct: 188 QGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLK 247
Query: 253 MLYAKAAAR 261
+L+ AR
Sbjct: 248 LLWNIDDAR 256
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 108 HCNVFMLSYRGYGESDGYPSQHGITRDAQAALEHLSQRTDIDTTRIVVFGRSLGGAVGAV 167
H +V + GYG SD R A AL+ L + + R+ + G SLGG
Sbjct: 85 HFHVLAVDQPGYGHSDKRAEHGQFNRYAAMALKGLFDQLGLG--RVPLVGNSLGGGTAVR 142
Query: 168 LTKNNPDKVAALIL 181
+ P + L+L
Sbjct: 143 FALDYPARAGRLVL 156
>pdb|4FBL|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|C Chain C, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|D Chain D, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 281
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 21/155 (13%)
Query: 132 TRDAQAALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLTKNNPDKVAALILENTFTSI--L 189
T D AA+ L +R D+ + + G S+GGA+ P++ A ++ N +
Sbjct: 105 TADIVAAMRWLEERCDV----LFMTGLSMGGALTVWAAGQFPERFAGIMPINAALRMESP 160
Query: 190 DMAGVLL-PFLKWFIGGSGS----KGPRILNFLVRSPWS-----TIDVVGE-----IKQP 234
D+A + P + G GS +G + L + V + TI V E +K P
Sbjct: 161 DLAALAFNPDAPAELPGIGSDIKAEGVKELAYPVTPVPAIKHLITIGAVAEMLLPRVKCP 220
Query: 235 ILFLSGLQDEMVPPSHMQMLYAKAAARNKHCKFVE 269
L + +D +VPP + +++Y + K ++E
Sbjct: 221 ALIIQSREDHVVPPHNGELIYNGIGSTEKELLWLE 255
>pdb|2JBW|A Chain A, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase.
pdb|2JBW|B Chain B, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase.
pdb|2JBW|C Chain C, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase.
pdb|2JBW|D Chain D, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase
Length = 386
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 21/143 (14%)
Query: 137 AALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLTKNNPDKVAALILENTFTSILDMAGVLL 196
A ++ L++ I I V GRSLGG P ++AA I F S LD +
Sbjct: 209 AVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEP-RLAACISWGGF-SDLDYWDLET 266
Query: 197 PFLK--W-FIGGSGSKGPRILNFLVRSPWSTIDVVGEIKQPILFLSGLQD---------- 243
P K W ++ + L+ V + T DV+ +I P L G+ D
Sbjct: 267 PLTKESWKYVSKVDTLEEARLH--VHAALETRDVLSQIACPTYILHGVHDEVPLSFVDTV 324
Query: 244 -EMVPPSHMQMLYAKAAARNKHC 265
E+VP H+ ++ K HC
Sbjct: 325 LELVPAEHLNLVVEK---DGDHC 344
>pdb|4FBM|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBM|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 293
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 21/155 (13%)
Query: 132 TRDAQAALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLTKNNPDKVAALILENTFTSI--L 189
T D AA+ L +R D+ + + G S+GGA+ P++ A ++ N +
Sbjct: 103 TADIVAAMRWLEERCDV----LFMTGLSMGGALTVWAAGQFPERFAGIMPINAALRMESP 158
Query: 190 DMAGVLL-PFLKWFIGGSGS----KGPRILNFLVRSPWS-----TIDVVGE-----IKQP 234
D+A + P + G GS +G + L + V + TI V E +K P
Sbjct: 159 DLAALAFNPDAPAELPGIGSDIKAEGVKELAYPVTPVPAIKHLITIGAVAEMLLPRVKCP 218
Query: 235 ILFLSGLQDEMVPPSHMQMLYAKAAARNKHCKFVE 269
L + +D +VPP + +++Y + K ++E
Sbjct: 219 ALIIQSREDHVVPPHNGELIYNGIGSTEKELLWLE 253
>pdb|1O6F|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 31/162 (19%)
Query: 134 DAQAALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLTKNNPDKVAALILENTFTSILDMAG 193
D Q A E+L + R+ + G S GG + A PD +I + ++DM
Sbjct: 529 DFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQ---VGVMDM-- 583
Query: 194 VLLPFLKWFIGGS------GSKGPRILNFLVR-SPWSTIDV--VGEIKQP-ILFLSGLQD 243
L F K+ IG + S + +L++ SP + + +I+ P +L L+
Sbjct: 584 --LKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHA 641
Query: 244 EMVPPSH-------MQMLYAKAAARNKHCKFVEFPTGMHMDT 278
+ V P H +Q + ++ +N P +H+DT
Sbjct: 642 DRVVPLHSLKFIATLQYIVGRSRKQNN-------PLLIHVDT 676
>pdb|3VIS|A Chain A, Crystal Structure Of Cutinase Est119 From Thermobifida
Alba Ahk119
pdb|3VIS|B Chain B, Crystal Structure Of Cutinase Est119 From Thermobifida
Alba Ahk119
Length = 306
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 133 RDAQAALEHL------SQRTDIDTTRIVVFGRSLGGAVGAVLTKNNPDKVAALIL 181
R AAL+++ + R ID +R+ V G S+GG L PD AA+ L
Sbjct: 143 RQLNAALDYMLTDASSAVRNRIDASRLAVMGHSMGGGGTLRLASQRPDLKAAIPL 197
>pdb|1XFD|A Chain A, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|B Chain B, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|C Chain C, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|D Chain D, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
Length = 723
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/168 (20%), Positives = 59/168 (35%), Gaps = 6/168 (3%)
Query: 133 RDAQAALEHLSQRTDIDTTRIVVFGRSLGGAVGA-VLTKNNPDKVAALILENTFTSILDM 191
+D A+ + + ID TR+ VFG+ GG + +L ++ + + I D
Sbjct: 560 KDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDF 619
Query: 192 AGVLLPFLKWFIGGSGSKGPRILNFLVRSPWSTIDVVGEIKQPILFLSGLQDEMVPPSHM 251
F + ++G G V S ++ +Q L + DE + H
Sbjct: 620 KLYASAFSERYLGLHGLDNRAYEMTKVAHRVSALE-----EQQFLIIHPTADEKIHFQHT 674
Query: 252 QMLYAKAAARNKHCKFVEFPTGMHMDTWLAGGDQYWRSIQEFLAEHVR 299
L + + +P H T + +RSI F E R
Sbjct: 675 AELITQLIRGKANYSLQIYPDESHYFTSSSLKQHLYRSIINFFVECFR 722
>pdb|1AZW|A Chain A, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
pdb|1AZW|B Chain B, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
Length = 313
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 111 VFMLSYRGYGESDGYPS-QHGITRDAQAALEHLSQRTDIDTTRIVVFGRSLGGAVGAVLT 169
+ + RG G S + T D A +E L RT + R VFG S G +
Sbjct: 63 IVLFDQRGSGRSTPHADLVDNTTWDLVADIERL--RTHLGVDRWQVFGGSWGSTLALAYA 120
Query: 170 KNNPDKVAALILENTF 185
+ +P +V L+L F
Sbjct: 121 QTHPQQVTELVLRGIF 136
>pdb|3FYT|A Chain A, Crystal Structure Of Bacillus Pumilus Acetyl Xylan
Esterase S181a Mutant In Complex With
Beta-D-Xylopyranose
pdb|3FYT|B Chain B, Crystal Structure Of Bacillus Pumilus Acetyl Xylan
Esterase S181a Mutant In Complex With
Beta-D-Xylopyranose
pdb|3FYT|C Chain C, Crystal Structure Of Bacillus Pumilus Acetyl Xylan
Esterase S181a Mutant In Complex With
Beta-D-Xylopyranose
pdb|3FYT|D Chain D, Crystal Structure Of Bacillus Pumilus Acetyl Xylan
Esterase S181a Mutant In Complex With
Beta-D-Xylopyranose
pdb|3FYT|E Chain E, Crystal Structure Of Bacillus Pumilus Acetyl Xylan
Esterase S181a Mutant In Complex With
Beta-D-Xylopyranose
pdb|3FYT|F Chain F, Crystal Structure Of Bacillus Pumilus Acetyl Xylan
Esterase S181a Mutant In Complex With
Beta-D-Xylopyranose
pdb|3FYT|G Chain G, Crystal Structure Of Bacillus Pumilus Acetyl Xylan
Esterase S181a Mutant In Complex With
Beta-D-Xylopyranose
pdb|3FYT|H Chain H, Crystal Structure Of Bacillus Pumilus Acetyl Xylan
Esterase S181a Mutant In Complex With
Beta-D-Xylopyranose
pdb|3FYT|I Chain I, Crystal Structure Of Bacillus Pumilus Acetyl Xylan
Esterase S181a Mutant In Complex With
Beta-D-Xylopyranose
pdb|3FYT|L Chain L, Crystal Structure Of Bacillus Pumilus Acetyl Xylan
Esterase S181a Mutant In Complex With
Beta-D-Xylopyranose
pdb|3FYT|M Chain M, Crystal Structure Of Bacillus Pumilus Acetyl Xylan
Esterase S181a Mutant In Complex With
Beta-D-Xylopyranose
pdb|3FYT|N Chain N, Crystal Structure Of Bacillus Pumilus Acetyl Xylan
Esterase S181a Mutant In Complex With
Beta-D-Xylopyranose
Length = 320
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 6/125 (4%)
Query: 130 GITRDAQAALEHLSQRTDIDTTRI-VVFGRSLGGAVGAVLTKNNPDKV--AALILENTFT 186
G+ DA ALE + ++D RI V+ G G A ++ KV A + F
Sbjct: 152 GVYLDAVRALEVIQSFPEVDEHRIGVIGGAQGGALAIAAAALSDIPKVVVADYPYLSNFE 211
Query: 187 SILDMAGVLLPFLKWFIGGSGSKGPRILN--FLVRSPWSTIDVVGEIKQPILFLSGLQDE 244
+D+A + P+L+ + P++ F S + I++ G +KQP L GL D+
Sbjct: 212 RAVDVA-LEQPYLEINSYFRRNSDPKVEEKAFETLSYFDLINLAGWVKQPTLMAIGLIDK 270
Query: 245 MVPPS 249
+ PPS
Sbjct: 271 ITPPS 275
>pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
pdb|2BKL|B Chain B, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 695
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 25/141 (17%)
Query: 128 QHGITRDAQAALEHLSQRTDIDTTRIVVFGRSLGG-AVGAVLTKNNPDKVAALILENTFT 186
+ + D AA E+L Q+ R+ ++G S GG VGA +T+ P+ A++
Sbjct: 502 KQNVFDDFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQ-RPELYGAVVC----- 555
Query: 187 SILDMAGVLLPFLKWFIGGSG---------SKGPRILNFL-VRSPWSTIDVVGEIKQP-I 235
A LL +++ + GSG ++ P L SP+ V +++ P +
Sbjct: 556 -----AVPLLDMVRYHLFGSGRTWIPEYGTAEKPEDFKTLHAYSPYH--HVRPDVRYPAL 608
Query: 236 LFLSGLQDEMVPPSHMQMLYA 256
L ++ D+ V P H + A
Sbjct: 609 LMMAADHDDRVDPMHARKFVA 629
>pdb|1M33|A Chain A, Crystal Structure Of Bioh At 1.7 A
Length = 258
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 108 HCNVFMLSYRGYGESDGYPSQHGITRDAQAALEHLSQRTDIDTTRIVVFGRSLGGAVGAV 167
H + ++ G+G S G+ G A A L Q D + + G SLGG V +
Sbjct: 39 HFTLHLVDLPGFGRSRGF----GALSLADXAEAVLQQAPD----KAIWLGWSLGGLVASQ 90
Query: 168 LTKNNPDKVAALI 180
+ +P++V AL+
Sbjct: 91 IALTHPERVRALV 103
>pdb|3FYU|A Chain A, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus Obtained In Presence Of D-Xylose And Sodium
Acetate
pdb|3FYU|B Chain B, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus Obtained In Presence Of D-Xylose And Sodium
Acetate
pdb|3FYU|D Chain D, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus Obtained In Presence Of D-Xylose And Sodium
Acetate
pdb|3FYU|H Chain H, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus Obtained In Presence Of D-Xylose And Sodium
Acetate
pdb|3FYU|I Chain I, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
Pumilus Obtained In Presence Of D-Xylose And Sodium
Acetate
Length = 320
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 216 FLVRSPWSTIDVVGEIKQPILFLSGLQDEMVPPS 249
F S + I++ G +KQP L GL D++ PPS
Sbjct: 242 FETLSYFDLINLAGWVKQPTLMAIGLIDKITPPS 275
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 224 TIDVVGEIKQPILFLSGLQDEMVPPSHMQMLYAKAAARNKHCKFVEFPTGM 274
T D+ G I+QP+L + G D++VP + +L AK + +P GM
Sbjct: 209 TEDLKG-IQQPVLVMHGDDDQIVPYENSGVLSAKLLPNGALKTYKGYPHGM 258
>pdb|4ETW|A Chain A, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|C Chain C, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 264
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 108 HCNVFMLSYRGYGESDGYPSQHGITRDAQAALEHLSQRTDIDTTRIVVFGRSLGGAVGAV 167
H + ++ G+G S G+ G A A L Q D + + G +LGG V +
Sbjct: 39 HFTLHLVDLPGFGRSRGF----GALSLADMAEAVLQQAPD----KAIWLGWALGGLVASQ 90
Query: 168 LTKNNPDKVAALI 180
+ +P++V AL+
Sbjct: 91 IALTHPERVQALV 103
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 111 VFMLSYRGYGESDGYPSQHGITRDAQAALEHLSQRTD-IDTTRIVVFGRSLGGAVGAVLT 169
V +L G+G+SD + G D A + L D +D +I + G S+GG T
Sbjct: 69 VILLDCPGWGKSDSVVNS-GSRSDLNARI--LKSVVDQLDIAKIHLLGNSMGGHSSVAFT 125
Query: 170 KNNPDKVAALIL 181
P++V L+L
Sbjct: 126 LKWPERVGKLVL 137
>pdb|3QZ4|A Chain A, Crystal Structure Of An Endo-1,4-Beta-Xylanase D (Bt_3675)
From Bacteroides Thetaiotaomicron Vpi-5482 At 1.74 A
Resolution
pdb|3QZ4|B Chain B, Crystal Structure Of An Endo-1,4-Beta-Xylanase D (Bt_3675)
From Bacteroides Thetaiotaomicron Vpi-5482 At 1.74 A
Resolution
Length = 311
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 198 FLKWFIGGSGSKGPRILNFLVRSPWSTIDVVGEIKQPILFLSGLQDEMVPPSHMQML 254
+ W + +GS ++ +SP I+V K+PI+ + ++E+ P+H +L
Sbjct: 208 YFFWSVDDTGSPNYHVVYGTAQSPLGPIEVA---KEPIVLIQNPKEEIYGPAHNSIL 261
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,374,648
Number of Sequences: 62578
Number of extensions: 377178
Number of successful extensions: 973
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 932
Number of HSP's gapped (non-prelim): 70
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)