BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021215
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DKT|A Chain A, Solution Structure Of The Chy Zinc Finger Domain Of The
Ring Finger And Chy Zinc Finger Domain-Containing
Protein 1 From Mus Musculus
Length = 143
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 69/139 (49%), Gaps = 11/139 (7%)
Query: 64 LRKGFMECQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICS 123
L +G C+HY R C ++APCC++++ CR CH D H + R +V +V C
Sbjct: 12 LAQGPRGCEHYDRACLLKAPCCDKLYTCRLCH---------DTNEDHQLDRFKVKEVQCI 62
Query: 124 LCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXXXXXNFFHCNK 183
C Q QQ C +C GEY+C C LFD D K+QYH +FFHC K
Sbjct: 63 NCEKLQHAQQTCEDCSTLFGEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLK 120
Query: 184 CRCCYSMLLKNSHPCVEGA 202
C C + L+ H C+E
Sbjct: 121 CNLCLTTNLRGKHKCIESG 139
>pdb|2K2C|A Chain A, Solution Nmr Structure Of N-Terminal Domain Of Human
Pirh2. Northeast Structural Genomics Consortium (Nesg)
Target Ht2a
Length = 137
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 73/146 (50%), Gaps = 12/146 (8%)
Query: 54 STNHNGSTELLRKGFMECQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIP 113
+ +G+T R G C+HY R C ++APCC++++ CR CH D H +
Sbjct: 4 TAREDGATGEER-GQRGCEHYDRGCLLKAPCCDKLYTCRLCH---------DNNEDHQLD 53
Query: 114 RHEVNQVICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHXXXXXXXXXX 173
R +V +V C C Q QQ C C GEY+C+ C LFD D KKQYH
Sbjct: 54 RFKVKEVQCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDKD--KKQYHCENCGICRIG 111
Query: 174 XXXNFFHCNKCRCCYSMLLKNSHPCV 199
+FFHC KC C +M L+ H C+
Sbjct: 112 PKEDFFHCLKCNLCLAMNLQGRHKCI 137
>pdb|2K2D|A Chain A, Solution Nmr Structure Of C-Terminal Domain Of Human
Pirh2. Northeast Structural Genomics Consortium (Nesg)
Target Ht2c
Length = 79
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 40/65 (61%)
Query: 252 SVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNT 311
S DM++ W + D E+A TPMP Y N V ILCNDC S VQFH+L KC C+SYNT
Sbjct: 7 SALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNT 66
Query: 312 RLTRG 316
G
Sbjct: 67 AQAGG 71
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 206 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSK 251
CP+C E + +R VLPCGH +H+ C +EM + Y CP+CS
Sbjct: 7 GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-EGYRCPLCSG 51
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 200 EGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKS 252
E +CP+C E + +R VLPCGH +H+ C +EM + Y CP+C S
Sbjct: 1 ENVSQQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK-EGYRCPLCMHS 52
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 206 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV 253
+CPVC E + + V LPC H H +C+ E H +CP+C KS+
Sbjct: 17 ECPVCKED-YALGESVRQLPCNHLFHDSCIVPWLEQHD-SCPVCRKSL 62
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKV 259
+H C VC E F+ R ++ + PC H H+ CL + E + CP+C+ V ++++
Sbjct: 14 LHELCAVCLED-FKPRDELGICPCKHAFHRKCLIKWLEVRK-VCPLCNMPVLQLAQL 68
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 206 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPICSK 251
+CP+C E E + +L CGHTI + CL+++ + CP CSK
Sbjct: 17 ECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSK 64
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 207 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKY 263
C +C E L E + LPC HT+ K C + E CP C + V W +Y
Sbjct: 18 CGICMEILVEP----VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS----WTRY 66
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 198 CVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 249
C G+ C +C E +DV + PCGH + +CL +E CP C
Sbjct: 328 CEMGSTFQLCKICAE----NDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 375
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 198 CVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 249
C G+ C +C E +DV + PCGH + +CL +E CP C
Sbjct: 328 CEMGSTFQLCKICAE----NDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 375
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 198 CVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 249
C G+ C +C E +DV + PCGH + +CL +E CP C
Sbjct: 326 CEMGSTFQLCKICAE----NDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 373
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 198 CVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 249
C G+ C +C E +DV + PCGH + +CL +E CP C
Sbjct: 326 CEMGSTFQLCKICAE----NDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 373
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 209 VCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 249
V C FE+RQ + VLPC H H C+ + + ++ CPIC
Sbjct: 27 VVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANR-TCPIC 66
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 198 CVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 249
C G+ C +C E +DV + PCGH + +CL +E CP C
Sbjct: 332 CEMGSTFQLCKICAE----NDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFC 379
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 198 CVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 249
C G+ C +C E +DV + PCGH + +CL +E CP C
Sbjct: 18 CEMGSTFQLCKICAE----NDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 65
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 198 CVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 249
C G+ C +C E +DV + PCGH + +CL +E CP C
Sbjct: 21 CEMGSTFQLCKICAE----NDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 68
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 211 CEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 249
C+ E +DV + PCGH + +CL +E CP C
Sbjct: 29 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFC 67
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 193 KNSHPCVEGAMHHDCPVCCEYLFETRQD---VIVLPCGHTIHKNCLKEMREHHQYACPIC 249
K HP G+ CP+C + E Q+ ++ CGH CL++ ++ CP C
Sbjct: 61 KRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTC 119
Query: 250 SKSV 253
K +
Sbjct: 120 RKKI 123
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMRE--HHQYACPIC 249
+ C VC EYL ++ +++ CGH K C+ E + CP+C
Sbjct: 14 VEASCSVCLEYL----KEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|2YJZ|A Chain A, Rat Steap4 Oxidoreductase Domain Complexed With Nadp
pdb|2YJZ|B Chain B, Rat Steap4 Oxidoreductase Domain Complexed With Nadp
pdb|2YJZ|C Chain C, Rat Steap4 Oxidoreductase Domain Complexed With Nadp
pdb|2YJZ|D Chain D, Rat Steap4 Oxidoreductase Domain Complexed With Nadp
Length = 201
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 184 CRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMRE 240
+C YS++ + +P V + V C +R DVIVL H H + L E+ +
Sbjct: 39 LQCGYSVVFGSRNPQVSSLLPRGAEVLCYSEAASRSDVIVLAV-HREHYDFLAELAD 94
>pdb|3EXQ|A Chain A, Crystal Structure Of A Nudix Family Hydrolase From
Lactobacillus Brevis
Length = 161
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 100 NNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGVCM-GEYFCESCKLFDDD 156
+ +NV K H P V + C T +++V G+ + G FC +C+ FDDD
Sbjct: 29 DKVNVPWKAGHSFPGGHVE--VGEPCAT-AAIREVFEETGLRLSGVTFCGTCEWFDDD 83
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
Query: 207 CPVCCEYLFETRQDVIVLPCGHTIHKNCL-----KEMREHHQYACPICSKS 252
CP+C E L + + L CGH+ + CL K M + + +CP+C S
Sbjct: 22 CPICLELLTQP----LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRIS 68
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 215 FETRQDVIVLPCGHTIHKNCLKEMREHHQYACPIC 249
+ R D+I LPC H+ + C+ + + H+ CPIC
Sbjct: 22 MDGRADLI-LPCAHSFCQKCIDKWSDRHRN-CPIC 54
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 207 CPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH--QYACPICSKSV 253
CP+C + L Q + + CGH C+ ++ E + CP+C SV
Sbjct: 23 CPICLDIL----QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.135 0.459
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,316,235
Number of Sequences: 62578
Number of extensions: 344147
Number of successful extensions: 1120
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1095
Number of HSP's gapped (non-prelim): 47
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)