Query 021215
Match_columns 316
No_of_seqs 282 out of 1407
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 14:25:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021215.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021215hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dkt_A Ring finger and CHY zin 100.0 1.4E-54 4.8E-59 372.7 12.5 134 61-205 9-142 (143)
2 2k2d_A Ring finger and CHY zin 99.9 3.1E-27 1.1E-31 184.9 1.5 71 246-316 1-71 (79)
3 2ecm_A Ring finger and CHY zin 99.3 8.4E-13 2.9E-17 93.0 4.5 52 202-254 3-54 (55)
4 2ecl_A Ring-box protein 2; RNF 99.3 1.7E-12 5.9E-17 99.9 4.7 52 203-255 25-76 (81)
5 1iym_A EL5; ring-H2 finger, ub 99.2 4.1E-12 1.4E-16 89.6 4.4 49 204-254 5-54 (55)
6 2kiz_A E3 ubiquitin-protein li 99.2 6.7E-12 2.3E-16 92.5 4.5 53 201-255 11-63 (69)
7 2ep4_A Ring finger protein 24; 99.2 6.1E-12 2.1E-16 93.9 4.3 55 200-256 11-65 (74)
8 1x4j_A Ring finger protein 38; 99.2 4.3E-12 1.5E-16 95.3 2.8 52 202-255 21-72 (75)
9 1v87_A Deltex protein 2; ring- 99.2 1.2E-11 4.2E-16 99.5 4.6 55 202-256 23-95 (114)
10 2l0b_A E3 ubiquitin-protein li 99.2 1.3E-11 4.6E-16 96.6 4.2 52 202-255 38-89 (91)
11 2ect_A Ring finger protein 126 99.2 1.9E-11 6.5E-16 92.1 4.4 52 202-255 13-64 (78)
12 2ea6_A Ring finger protein 4; 99.1 2.3E-11 7.8E-16 88.8 3.5 52 202-254 13-67 (69)
13 3ng2_A RNF4, snurf, ring finge 99.1 2.1E-11 7.1E-16 89.8 3.3 53 202-255 8-63 (71)
14 1g25_A CDK-activating kinase a 99.1 3.9E-11 1.3E-15 87.7 4.6 52 204-255 3-55 (65)
15 2xeu_A Ring finger protein 4; 99.1 3.6E-11 1.2E-15 86.5 3.4 51 204-255 3-56 (64)
16 1chc_A Equine herpes virus-1 r 99.1 5.5E-11 1.9E-15 87.2 3.6 49 203-255 4-52 (68)
17 2ct2_A Tripartite motif protei 99.1 9.1E-11 3.1E-15 89.6 4.7 53 203-255 14-68 (88)
18 1t1h_A Gspef-atpub14, armadill 99.0 2.4E-10 8.2E-15 86.0 5.9 49 202-254 6-54 (78)
19 3dpl_R Ring-box protein 1; ubi 99.0 1.6E-10 5.3E-15 94.2 5.0 34 220-254 67-100 (106)
20 1e4u_A Transcriptional repress 99.0 2.6E-11 9E-16 93.6 -0.0 58 203-262 10-69 (78)
21 2d8t_A Dactylidin, ring finger 99.0 1.5E-10 5.1E-15 86.1 3.7 49 202-255 13-61 (71)
22 2csy_A Zinc finger protein 183 99.0 1.4E-10 4.9E-15 88.1 3.5 48 202-254 13-60 (81)
23 2ysl_A Tripartite motif-contai 99.0 2.7E-10 9.2E-15 84.4 4.8 50 202-255 18-69 (73)
24 2djb_A Polycomb group ring fin 99.0 1.8E-10 6.1E-15 85.9 3.4 49 203-255 14-62 (72)
25 2ecy_A TNF receptor-associated 99.0 2E-10 6.9E-15 84.1 3.4 49 203-255 14-62 (66)
26 2ecn_A Ring finger protein 141 99.0 5.1E-11 1.7E-15 88.0 -0.4 49 202-256 13-61 (70)
27 2yur_A Retinoblastoma-binding 98.9 1.9E-10 6.4E-15 86.5 2.0 50 204-257 15-66 (74)
28 4ayc_A E3 ubiquitin-protein li 98.9 4.4E-10 1.5E-14 94.1 3.9 46 205-255 54-99 (138)
29 3lrq_A E3 ubiquitin-protein li 98.9 4.6E-10 1.6E-14 89.2 3.7 48 204-255 22-70 (100)
30 4ap4_A E3 ubiquitin ligase RNF 98.9 4.7E-10 1.6E-14 90.9 3.6 52 203-255 6-60 (133)
31 3fl2_A E3 ubiquitin-protein li 98.9 7.2E-10 2.5E-14 90.8 4.3 48 204-255 52-99 (124)
32 2ysj_A Tripartite motif-contai 98.9 9.4E-10 3.2E-14 79.7 4.2 43 203-249 19-63 (63)
33 2egp_A Tripartite motif-contai 98.9 3E-10 1E-14 85.2 0.9 49 203-255 11-65 (79)
34 2ecw_A Tripartite motif-contai 98.9 1.4E-09 4.7E-14 82.0 4.2 49 203-255 18-71 (85)
35 3ztg_A E3 ubiquitin-protein li 98.9 1.2E-09 4.1E-14 84.6 3.8 48 203-254 12-61 (92)
36 2y43_A E3 ubiquitin-protein li 98.8 1.7E-09 5.9E-14 85.1 4.2 48 204-255 22-69 (99)
37 2ecj_A Tripartite motif-contai 98.8 1.6E-09 5.6E-14 76.6 3.6 43 203-249 14-58 (58)
38 4a0k_B E3 ubiquitin-protein li 98.8 4.3E-10 1.5E-14 93.4 0.5 50 204-254 48-111 (117)
39 2ckl_A Polycomb group ring fin 98.8 2.1E-09 7.2E-14 86.0 4.3 48 204-255 15-62 (108)
40 2ecv_A Tripartite motif-contai 98.8 1.8E-09 6.2E-14 81.3 3.8 49 203-255 18-71 (85)
41 2ckl_B Ubiquitin ligase protei 98.8 2.5E-09 8.4E-14 91.6 4.5 48 204-254 54-101 (165)
42 2d8s_A Cellular modulator of i 98.8 2.2E-09 7.7E-14 83.2 3.8 53 201-255 12-70 (80)
43 3l11_A E3 ubiquitin-protein li 98.8 1.1E-09 3.8E-14 88.4 1.7 48 204-255 15-62 (115)
44 1z6u_A NP95-like ring finger p 98.8 1.4E-09 4.9E-14 92.9 2.4 48 204-255 78-125 (150)
45 1rmd_A RAG1; V(D)J recombinati 98.8 4.6E-09 1.6E-13 84.8 4.3 48 204-255 23-70 (116)
46 1jm7_A BRCA1, breast cancer ty 98.7 4.4E-09 1.5E-13 83.7 3.2 47 204-254 21-69 (112)
47 3hct_A TNF receptor-associated 98.7 5.3E-09 1.8E-13 85.2 3.6 48 204-255 18-65 (118)
48 4ap4_A E3 ubiquitin ligase RNF 98.7 4.8E-09 1.6E-13 84.9 3.3 53 202-255 70-125 (133)
49 2c2l_A CHIP, carboxy terminus 98.6 4.3E-08 1.5E-12 88.4 5.9 51 201-255 205-255 (281)
50 2vje_A E3 ubiquitin-protein li 98.6 2.1E-08 7.3E-13 73.9 3.0 50 201-255 5-57 (64)
51 2kr4_A Ubiquitin conjugation f 98.6 2.8E-08 9.6E-13 77.2 3.6 48 203-255 13-60 (85)
52 1bor_A Transcription factor PM 98.6 1.1E-08 3.6E-13 73.4 1.0 45 202-254 4-48 (56)
53 1jm7_B BARD1, BRCA1-associated 98.5 1.5E-08 5.1E-13 82.3 1.3 44 204-254 22-66 (117)
54 2kre_A Ubiquitin conjugation f 98.5 4.3E-08 1.5E-12 78.7 3.8 48 203-255 28-75 (100)
55 3knv_A TNF receptor-associated 98.5 1.4E-08 4.9E-13 85.9 0.9 47 203-253 30-76 (141)
56 1wgm_A Ubiquitin conjugation f 98.5 7E-08 2.4E-12 77.1 4.3 48 203-255 21-69 (98)
57 2vje_B MDM4 protein; proto-onc 98.5 3.8E-08 1.3E-12 72.4 2.3 49 202-255 5-56 (63)
58 4ic3_A E3 ubiquitin-protein li 98.5 3.2E-08 1.1E-12 74.6 1.9 43 204-255 24-67 (74)
59 3hcs_A TNF receptor-associated 98.5 6.7E-08 2.3E-12 82.9 3.2 48 204-255 18-65 (170)
60 2ct0_A Non-SMC element 1 homol 98.4 1.1E-07 3.9E-12 73.0 3.6 49 204-255 15-64 (74)
61 2yu4_A E3 SUMO-protein ligase 98.4 2.3E-07 7.7E-12 73.1 4.7 46 203-252 6-59 (94)
62 2y1n_A E3 ubiquitin-protein li 98.3 2.7E-07 9.1E-12 90.6 4.4 49 203-255 331-379 (389)
63 1wim_A KIAA0161 protein; ring 98.3 7.5E-07 2.6E-11 69.5 5.5 49 203-252 4-61 (94)
64 2ecg_A Baculoviral IAP repeat- 98.3 2.7E-07 9.3E-12 69.4 2.7 43 204-255 25-68 (75)
65 2f42_A STIP1 homology and U-bo 98.3 7.9E-07 2.7E-11 78.8 5.8 49 203-255 105-153 (179)
66 2ea5_A Cell growth regulator w 98.2 6.1E-07 2.1E-11 67.0 3.8 46 202-256 13-59 (68)
67 2yho_A E3 ubiquitin-protein li 98.1 6.2E-07 2.1E-11 68.8 2.0 44 204-256 18-62 (79)
68 1vyx_A ORF K3, K3RING; zinc-bi 98.1 1.5E-06 5.3E-11 63.7 2.9 51 200-254 2-58 (60)
69 3k1l_B Fancl; UBC, ring, RWD, 97.9 1.8E-06 6.3E-11 83.8 1.2 53 202-254 306-372 (381)
70 3htk_C E3 SUMO-protein ligase 97.9 4.5E-06 1.5E-10 78.2 3.8 50 202-254 179-231 (267)
71 3t6p_A Baculoviral IAP repeat- 97.8 6.6E-06 2.3E-10 79.3 1.7 43 204-255 295-338 (345)
72 2bay_A PRE-mRNA splicing facto 97.6 3.6E-05 1.2E-09 56.4 2.8 48 203-255 2-50 (61)
73 3vk6_A E3 ubiquitin-protein li 97.5 5.7E-05 1.9E-09 61.3 3.9 49 206-257 3-51 (101)
74 3nw0_A Non-structural maintena 95.9 0.0052 1.8E-07 56.2 3.9 49 204-255 180-229 (238)
75 2jrp_A Putative cytoplasmic pr 92.6 0.043 1.5E-06 42.8 1.6 28 121-153 33-60 (81)
76 2jun_A Midline-1; B-BOX, TRIM, 92.0 0.061 2.1E-06 41.7 1.9 32 204-238 3-36 (101)
77 2lbm_A Transcriptional regulat 88.9 0.59 2E-05 39.7 5.5 50 199-252 58-117 (142)
78 3a43_A HYPD, hydrogenase nicke 86.6 0.24 8.1E-06 41.7 1.6 37 280-316 68-123 (139)
79 2ko5_A Ring finger protein Z; 86.3 0.32 1.1E-05 39.0 2.1 45 204-255 28-73 (99)
80 2ysm_A Myeloid/lymphoid or mix 85.9 0.3 1E-05 38.9 1.8 82 166-251 9-103 (111)
81 3v43_A Histone acetyltransfera 82.5 0.36 1.2E-05 38.8 0.9 74 174-251 22-111 (112)
82 2kdx_A HYPA, hydrogenase/ureas 80.1 0.72 2.5E-05 37.3 1.9 35 280-316 71-106 (119)
83 2ysm_A Myeloid/lymphoid or mix 78.0 4.4 0.00015 32.0 5.9 32 160-191 47-82 (111)
84 2jne_A Hypothetical protein YF 76.7 1.3 4.3E-05 35.8 2.3 9 143-151 80-88 (101)
85 2jne_A Hypothetical protein YF 76.6 0.34 1.2E-05 39.0 -1.0 67 203-298 31-100 (101)
86 1weo_A Cellulose synthase, cat 75.6 4.2 0.00014 32.3 5.0 56 199-254 11-69 (93)
87 2kwj_A Zinc finger protein DPF 74.2 0.31 1.1E-05 39.3 -1.9 83 165-253 2-109 (114)
88 2lri_C Autoimmune regulator; Z 71.6 2.9 0.0001 30.7 3.1 45 204-252 12-59 (66)
89 4bbq_A Lysine-specific demethy 69.0 0.98 3.3E-05 36.0 -0.1 29 223-251 78-113 (117)
90 3ql9_A Transcriptional regulat 64.1 7.4 0.00025 32.4 4.4 51 199-253 52-112 (129)
91 1we9_A PHD finger family prote 62.1 1.4 4.9E-05 31.5 -0.3 50 203-252 5-58 (64)
92 2k4x_A 30S ribosomal protein S 54.7 8.3 0.00028 27.5 2.7 10 131-140 17-26 (55)
93 2l5u_A Chromodomain-helicase-D 51.0 9.1 0.00031 27.3 2.5 46 202-251 9-57 (61)
94 3j20_Y 30S ribosomal protein S 50.3 7.1 0.00024 27.3 1.7 10 131-140 18-27 (50)
95 2dkt_A Ring finger and CHY zin 49.9 5.1 0.00017 34.1 1.1 29 145-173 99-127 (143)
96 2e6s_A E3 ubiquitin-protein li 47.6 11 0.00037 28.4 2.5 64 175-251 7-76 (77)
97 2k16_A Transcription initiatio 47.4 4.5 0.00015 29.8 0.3 47 204-253 18-69 (75)
98 1f62_A Transcription factor WS 46.6 13 0.00044 25.2 2.6 45 206-252 2-50 (51)
99 2i13_A AART; DNA binding, zinc 46.0 7.4 0.00025 32.0 1.5 16 243-258 161-176 (190)
100 1mm2_A MI2-beta; PHD, zinc fin 41.1 7.7 0.00026 27.7 0.7 48 202-253 7-57 (61)
101 3lqh_A Histone-lysine N-methyl 40.9 11 0.00036 33.1 1.7 50 205-255 3-66 (183)
102 3u5n_A E3 ubiquitin-protein li 40.7 8.4 0.00029 33.7 1.0 45 202-252 5-54 (207)
103 2pv0_B DNA (cytosine-5)-methyl 40.1 20 0.0007 34.9 3.8 69 181-253 70-149 (386)
104 2jrp_A Putative cytoplasmic pr 39.6 16 0.00055 28.2 2.3 26 119-144 18-43 (81)
105 4ayb_P DNA-directed RNA polyme 38.6 14 0.0005 25.9 1.8 21 121-141 5-32 (48)
106 2ayj_A 50S ribosomal protein L 38.5 35 0.0012 24.7 3.8 27 115-141 15-42 (56)
107 2dmd_A Zinc finger protein 64, 36.6 29 0.001 24.7 3.4 15 176-190 62-76 (96)
108 3uk3_C Zinc finger protein 217 36.6 46 0.0016 21.2 4.1 16 243-258 4-19 (57)
109 2kgg_A Histone demethylase jar 36.0 10 0.00034 26.2 0.6 45 205-250 3-52 (52)
110 3u5c_f 40S ribosomal protein S 35.9 17 0.0006 30.5 2.3 24 129-152 115-146 (152)
111 4gut_A Lysine-specific histone 35.5 60 0.0021 33.9 6.7 82 194-290 3-103 (776)
112 3i2d_A E3 SUMO-protein ligase 33.1 36 0.0012 33.0 4.2 48 204-254 249-299 (371)
113 1wep_A PHF8; structural genomi 32.8 30 0.001 25.6 2.9 48 204-253 12-64 (79)
114 4fo9_A E3 SUMO-protein ligase 32.0 39 0.0013 32.7 4.2 48 204-254 215-265 (360)
115 3mjh_B Early endosome antigen 31.4 23 0.00079 23.0 1.8 15 243-257 5-19 (34)
116 2yql_A PHD finger protein 21A; 31.4 5.2 0.00018 28.0 -1.5 46 202-251 7-55 (56)
117 2lv9_A Histone-lysine N-methyl 30.6 47 0.0016 25.7 3.8 32 225-256 47-80 (98)
118 3o36_A Transcription intermedi 30.6 15 0.00053 31.2 1.0 46 204-253 4-52 (184)
119 1x4s_A Protein FON, zinc finge 30.5 20 0.00069 26.1 1.5 24 118-141 10-35 (59)
120 2jvx_A NF-kappa-B essential mo 30.4 16 0.00056 22.8 0.8 16 243-258 3-18 (28)
121 1ryq_A DNA-directed RNA polyme 30.2 28 0.00095 26.1 2.2 25 116-141 8-32 (69)
122 1bbo_A Human enhancer-binding 29.3 42 0.0014 21.4 2.9 13 244-256 2-14 (57)
123 2ku3_A Bromodomain-containing 29.3 16 0.00054 27.1 0.8 50 201-251 13-65 (71)
124 2egq_A FHL1 protein; LIM domai 29.1 52 0.0018 23.3 3.6 42 203-255 14-58 (77)
125 3lqh_A Histone-lysine N-methyl 28.2 35 0.0012 29.7 2.9 55 146-212 4-62 (183)
126 1zfo_A LAsp-1; LIM domain, zin 28.1 17 0.00057 22.6 0.6 30 203-235 2-31 (31)
127 3lpe_B DNA-directed RNA polyme 28.1 24 0.00081 25.6 1.5 19 121-140 3-21 (59)
128 1g47_A Pinch protein; LIM doma 27.7 35 0.0012 24.2 2.4 43 202-255 9-51 (77)
129 2puy_A PHD finger protein 21A; 27.6 5 0.00017 28.4 -2.2 45 203-251 4-51 (60)
130 1vq8_Z 50S ribosomal protein L 27.6 21 0.00073 27.4 1.3 32 132-174 27-58 (83)
131 3a1b_A DNA (cytosine-5)-methyl 27.4 27 0.00093 30.1 2.0 52 185-241 60-114 (159)
132 1x61_A Thyroid receptor intera 27.3 35 0.0012 23.9 2.4 40 204-254 5-44 (72)
133 4gzn_C ZFP-57, zinc finger pro 27.2 25 0.00087 24.5 1.5 14 244-257 5-18 (60)
134 2ee8_A Protein ODD-skipped-rel 27.1 31 0.0011 25.1 2.1 17 242-258 44-60 (106)
135 2fiy_A Protein FDHE homolog; F 26.9 43 0.0015 31.5 3.5 24 118-141 207-231 (309)
136 1x4k_A Skeletal muscle LIM-pro 26.6 46 0.0016 23.2 2.9 41 204-255 5-45 (72)
137 1x63_A Skeletal muscle LIM-pro 26.6 42 0.0014 24.1 2.7 42 203-255 14-55 (82)
138 1znf_A 31ST zinc finger from X 25.7 43 0.0015 17.6 2.1 15 244-258 2-16 (27)
139 1x68_A FHL5 protein; four-and- 25.6 49 0.0017 23.5 2.9 69 203-306 4-74 (76)
140 1klr_A Zinc finger Y-chromosom 25.1 58 0.002 17.2 2.6 16 243-258 2-17 (30)
141 1vd4_A Transcription initiatio 24.9 44 0.0015 22.5 2.5 9 134-142 16-24 (62)
142 2drp_A Protein (tramtrack DNA- 24.7 14 0.0005 24.7 -0.2 9 160-168 39-47 (66)
143 2dlq_A GLI-kruppel family memb 24.6 35 0.0012 25.3 2.0 73 203-294 6-78 (124)
144 1weu_A Inhibitor of growth fam 24.3 33 0.0011 26.7 1.8 43 203-253 35-86 (91)
145 3u6p_A Formamidopyrimidine-DNA 23.9 34 0.0012 31.4 2.1 20 132-151 245-272 (273)
146 2xzf_A Formamidopyrimidine-DNA 23.5 35 0.0012 31.2 2.1 20 132-151 242-269 (271)
147 3o70_A PHD finger protein 13; 23.4 15 0.00051 26.9 -0.3 49 202-252 17-67 (68)
148 1twf_L ABC10-alpha, DNA-direct 23.3 39 0.0013 25.1 2.0 8 162-169 46-53 (70)
149 1fp0_A KAP-1 corepressor; PHD 23.2 31 0.0011 26.8 1.5 47 202-252 23-72 (88)
150 1k3x_A Endonuclease VIII; hydr 23.1 36 0.0012 30.9 2.1 20 132-151 234-261 (262)
151 3v2d_5 50S ribosomal protein L 23.0 32 0.0011 24.9 1.4 29 281-314 29-57 (60)
152 1k82_A Formamidopyrimidine-DNA 22.9 37 0.0012 31.0 2.1 20 132-151 240-267 (268)
153 2l43_A N-teminal domain from h 22.7 31 0.0011 26.4 1.4 49 203-253 24-76 (88)
154 1ee8_A MUTM (FPG) protein; bet 22.6 37 0.0013 31.0 2.1 20 132-151 235-262 (266)
155 3shb_A E3 ubiquitin-protein li 22.6 53 0.0018 24.6 2.7 23 167-189 29-52 (77)
156 1wyh_A SLIM 2, skeletal muscle 22.5 40 0.0014 23.5 1.9 41 204-255 5-45 (72)
157 1ard_A Yeast transcription fac 22.3 53 0.0018 17.4 2.0 16 243-258 2-17 (29)
158 2adr_A ADR1; transcription reg 21.7 83 0.0028 20.2 3.3 14 244-257 3-16 (60)
159 2xzm_9 RPS31E; ribosome, trans 21.6 33 0.0011 30.2 1.5 22 132-153 113-140 (189)
160 2kmk_A Zinc finger protein GFI 21.5 80 0.0027 21.4 3.3 41 242-293 28-68 (82)
161 3f6q_B LIM and senescent cell 21.3 58 0.002 22.3 2.5 42 203-255 10-51 (72)
162 2m0e_A Zinc finger and BTB dom 21.3 57 0.0019 17.1 2.0 16 243-258 2-17 (29)
163 2lce_A B-cell lymphoma 6 prote 21.0 81 0.0028 21.4 3.2 15 243-257 17-31 (74)
164 6rxn_A Rubredoxin; electron tr 20.9 43 0.0015 23.0 1.7 28 142-169 2-38 (46)
165 2yt5_A Metal-response element- 20.8 54 0.0018 23.1 2.2 25 143-167 5-29 (66)
166 1xwh_A Autoimmune regulator; P 20.5 15 0.00052 26.4 -0.8 46 202-251 6-54 (66)
167 3m62_A Ubiquitin conjugation f 20.5 76 0.0026 34.5 4.2 48 202-254 889-937 (968)
168 4esj_A Type-2 restriction enzy 20.3 43 0.0015 30.9 2.0 8 133-140 35-42 (257)
169 1ptq_A Protein kinase C delta 20.3 56 0.0019 21.5 2.2 11 158-168 25-35 (50)
170 1p7a_A BF3, BKLF, kruppel-like 20.1 54 0.0019 18.8 1.9 16 243-258 11-26 (37)
171 1x5w_A Zinc finger protein 64, 20.1 52 0.0018 22.1 2.0 31 243-273 37-67 (70)
No 1
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=100.00 E-value=1.4e-54 Score=372.67 Aligned_cols=134 Identities=43% Similarity=1.047 Sum_probs=126.7
Q ss_pred cccccCcccccccccccceeecCCCCCcccCchhhhhhccCcccCccCCCCCCCccCceeecCCCCcccccccCCCCCCC
Q 021215 61 TELLRKGFMECQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCGV 140 (316)
Q Consensus 61 ~~~~~~~~~~C~HY~r~c~l~~pcC~~~y~Cr~CHde~~~~~~~~~~~~H~~dR~~v~~V~C~~C~~eq~v~~~C~~Cg~ 140 (316)
..+++.+.+||+||+|+|+|+||||++|||||+||||++ +|+++|+++++|+||.|+++|++++.|++||+
T Consensus 9 ~~~~~~~~~gC~HY~r~~~lr~pCC~k~y~Cr~CHde~~---------dH~l~r~~~~~vlCg~C~~~q~~~~~C~~Cg~ 79 (143)
T 2dkt_A 9 VRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNE---------DHQLDRFKVKEVQCINCEKLQHAQQTCEDCST 79 (143)
T ss_dssp CCCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHTS---------SSCCCSSSCCCEEESSSCCEECSCSBCSSSCC
T ss_pred ccccccCcCCCcccCCCeeEECCCCCCccchhhhhcccc---------ccccchhccceeeecccCccccccCcCCCCCc
Confidence 445566788999999999999999999999999999975 89999999999999999999999999999999
Q ss_pred ccceEecCccccccCCCCCCeeecCCCCcceecCCcceeeccCCcceeeccccccccccCCCCCC
Q 021215 141 CMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHH 205 (316)
Q Consensus 141 ~f~~YfC~~Ckl~ddd~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~CiE~~~~~ 205 (316)
.||+|||+|||||| ++|+||||++|||||+|+++|||||++||+|||++|+++|+|+|++++.
T Consensus 80 ~f~~Y~C~~C~l~d--~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~e~~~~s 142 (143)
T 2dkt_A 80 LFGEYYCSICHLFD--KDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIESGPSS 142 (143)
T ss_dssp BSCSEECSSSCCEE--CSSSEEEETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCSCCCSCC
T ss_pred cceeeEeceeeccc--CCCceecCCCCCceeccCCcCcEECCcCCeeeccccCcCcccCccCccC
Confidence 99999999999997 4699999999999999999999999999999999999999999998764
No 2
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=99.93 E-value=3.1e-27 Score=184.91 Aligned_cols=71 Identities=48% Similarity=0.832 Sum_probs=38.0
Q ss_pred CCCCCccccchhHHHHHhHHHHHcCCCChhhhcCcceEEcCCCCCCccccceeeeecCCCCCCccccccCC
Q 021215 246 CPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG 316 (316)
Q Consensus 246 CPiCrks~~d~~~~~~~lD~~i~~~pmP~ey~~~~~~IlCnDC~~~s~v~~H~lg~kC~~C~SyNT~~~~~ 316 (316)
||+|+|++.||+.+|++||++|+++|||++|++++++|+||||+++|.++||||||||+.|+||||++++|
T Consensus 1 ~~~c~ks~~dm~~~~~~lD~~ia~~pmP~~y~~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNTr~~~G 71 (79)
T 2k2d_A 1 GSHMMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGG 71 (79)
T ss_dssp --------------------------------CCEEEEEESSSCCEEEEECCTTCCCCTTTSCCCEEESCC
T ss_pred CCcccccHHHHHHHHHHHHHHHHhCCCCHHHhCCEeEEECCCCCCCccCCceeecccCcCCCCcCeEecCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999875
No 3
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.33 E-value=8.4e-13 Score=92.99 Aligned_cols=52 Identities=38% Similarity=0.913 Sum_probs=44.8
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCcccc
Q 021215 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 254 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~ 254 (316)
+.+..||||++.+.++...++.++|||.||..||.+|++. ..+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 4568899999987666667889999999999999999985 489999998764
No 4
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.7e-12 Score=99.88 Aligned_cols=52 Identities=19% Similarity=0.436 Sum_probs=39.6
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
++..||||++++..+...+++++|||.||..||.+|++. +.+||+||+++..
T Consensus 25 ~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 25 VMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp TTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred hhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 356788888864443333344469999999999999985 5799999998763
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.25 E-value=4.1e-12 Score=89.56 Aligned_cols=49 Identities=31% Similarity=0.777 Sum_probs=41.1
Q ss_pred CCCCcccccccccCcceeEEcC-CCCcccHHhHHHHhccCCCCCCCCCcccc
Q 021215 204 HHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREHHQYACPICSKSVC 254 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~v~~Lp-CGH~fH~~Ci~~wl~~~~~~CPiCrks~~ 254 (316)
+..|+||++. +..++.++.++ |||.||..||.+|++. +.+||+||+.+.
T Consensus 5 ~~~C~IC~~~-~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAE-LEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCC-CCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCcCccCCcc-ccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 5789999997 44455677887 9999999999999985 689999998764
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.22 E-value=6.7e-12 Score=92.51 Aligned_cols=53 Identities=28% Similarity=0.659 Sum_probs=44.2
Q ss_pred CCCCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 201 GAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 201 ~~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
...+..|+||++. +.....++.|||||.||..||.+|++. +.+||+||+.+..
T Consensus 11 ~~~~~~C~IC~~~-~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSI-LEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBC-CCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCcc-ccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 3456789999996 445567889999999999999999985 5789999988764
No 7
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=6.1e-12 Score=93.94 Aligned_cols=55 Identities=35% Similarity=0.800 Sum_probs=45.9
Q ss_pred CCCCCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccch
Q 021215 200 EGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDM 256 (316)
Q Consensus 200 E~~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d~ 256 (316)
+...+..|+||++. +.....+++|||||.||..||.+|++. +.+||+||+.+..+
T Consensus 11 ~~~~~~~C~IC~~~-~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 11 ELNLHELCAVCLED-FKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCSCBCSSSCCB-CCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSC
T ss_pred cCCCCCCCcCCCcc-cCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCcccccc
Confidence 44567899999996 555566778899999999999999985 56999999988764
No 8
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=4.3e-12 Score=95.34 Aligned_cols=52 Identities=35% Similarity=0.715 Sum_probs=44.1
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
.....|+||++. +..+..++.|||||.||..||.+|++. +.+||+||+.+..
T Consensus 21 ~~~~~C~IC~~~-~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCD-FESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEE-CCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcc-cCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 346789999996 555667889999999999999999985 5799999998864
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.18 E-value=1.2e-11 Score=99.51 Aligned_cols=55 Identities=27% Similarity=0.469 Sum_probs=42.2
Q ss_pred CCCCCCcccccccccCc--------------ceeEEcCCCCcccHHhHHHHhc----cCCCCCCCCCccccch
Q 021215 202 AMHHDCPVCCEYLFETR--------------QDVIVLPCGHTIHKNCLKEMRE----HHQYACPICSKSVCDM 256 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~--------------~~v~~LpCGH~fH~~Ci~~wl~----~~~~~CPiCrks~~d~ 256 (316)
..+..||||++.|.... ..+++++|||.||..||.+|+. ..+.+||+||+.+..+
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 34678999999764321 2344889999999999999994 2357899999988753
No 10
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.17 E-value=1.3e-11 Score=96.58 Aligned_cols=52 Identities=27% Similarity=0.662 Sum_probs=43.4
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
..+..|+||++. +.....++.|||||.||..||.+|++. +.+||+||+.+..
T Consensus 38 ~~~~~C~IC~~~-~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSE-YVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEE-CCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred CCCCCCcccChh-hcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 346789999996 445567888999999999999999984 6899999998753
No 11
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.16 E-value=1.9e-11 Score=92.10 Aligned_cols=52 Identities=35% Similarity=0.802 Sum_probs=43.9
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
..+..|+||++. +.....++.|+|||.||..||.+|++. +.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~-~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKED-YALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSC-CCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCC
T ss_pred CCCCCCeeCCcc-ccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCC
Confidence 346799999996 555567788999999999999999974 5899999998875
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2.3e-11 Score=88.79 Aligned_cols=52 Identities=25% Similarity=0.674 Sum_probs=42.1
Q ss_pred CCCCCCcccccccccC---cceeEEcCCCCcccHHhHHHHhccCCCCCCCCCcccc
Q 021215 202 AMHHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 254 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s---~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~ 254 (316)
.....||||++.+... +..++.++|||.||..||.+|+.. +.+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccC
Confidence 3467899999975432 234588999999999999999985 689999999875
No 13
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.13 E-value=2.1e-11 Score=89.84 Aligned_cols=53 Identities=25% Similarity=0.664 Sum_probs=42.9
Q ss_pred CCCCCCcccccccccC---cceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 202 AMHHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s---~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
..+..||||++.+.+. ...++.++|||.||..||.+|++. +.+||+||+.+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccCh
Confidence 4467899999975442 244588999999999999999985 5799999998864
No 14
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=3.9e-11 Score=87.71 Aligned_cols=52 Identities=23% Similarity=0.560 Sum_probs=41.7
Q ss_pred CCCCccccc-ccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 204 HHDCPVCCE-YLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE-~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
+..||||++ .+......+++++|||+||..|+.+|+.....+||+||+++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 568999999 6544333446789999999999999976556789999998864
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.10 E-value=3.6e-11 Score=86.50 Aligned_cols=51 Identities=25% Similarity=0.699 Sum_probs=41.7
Q ss_pred CCCCcccccccccC---cceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 204 HHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~s---~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
+..||||++.+.+. .+.++.++|||.||..|+.+|++. +.+||+||+.+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCc
Confidence 56899999975431 234578999999999999999985 6899999998864
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.07 E-value=5.5e-11 Score=87.16 Aligned_cols=49 Identities=27% Similarity=0.655 Sum_probs=41.2
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
.+..||||++.+ . .+++.+||||.||..|+.+|++. +.+||+||+.+..
T Consensus 4 ~~~~C~IC~~~~-~--~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDP-S--NYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCC-C--SCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccc-c--CCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 467899999963 3 24689999999999999999975 5899999998864
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=9.1e-11 Score=89.59 Aligned_cols=53 Identities=34% Similarity=0.706 Sum_probs=42.8
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccC--CCCCCCCCccccc
Q 021215 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH--QYACPICSKSVCD 255 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~--~~~CPiCrks~~d 255 (316)
....||||++.+..+...+++|+|||.||..|+..|++.. ..+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 3578999999754444347889999999999999999753 4789999998764
No 18
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.04 E-value=2.4e-10 Score=86.01 Aligned_cols=49 Identities=16% Similarity=0.478 Sum_probs=41.2
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCcccc
Q 021215 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 254 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~ 254 (316)
..+..||||++. +. ++++++|||+||..||.+|+..+..+||+||+.+.
T Consensus 6 ~~~~~C~IC~~~-~~---~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 6 PEYFRCPISLEL-MK---DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSSCTTTSCC-CS---SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred cccCCCCCcccc-cc---CCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 346789999995 54 35678999999999999999865789999999885
No 19
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.04 E-value=1.6e-10 Score=94.22 Aligned_cols=34 Identities=21% Similarity=0.457 Sum_probs=30.1
Q ss_pred eeEEcCCCCcccHHhHHHHhccCCCCCCCCCcccc
Q 021215 220 DVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 254 (316)
Q Consensus 220 ~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~ 254 (316)
.++.++|||.||..||.+||+. +.+||+||+++.
T Consensus 67 ~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 67 TVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred eEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 4678899999999999999985 689999999864
No 20
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.02 E-value=2.6e-11 Score=93.55 Aligned_cols=58 Identities=29% Similarity=0.643 Sum_probs=44.1
Q ss_pred CCCCCcccccccccCcceeEEcC--CCCcccHHhHHHHhccCCCCCCCCCccccchhHHHHH
Q 021215 203 MHHDCPVCCEYLFETRQDVIVLP--CGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEK 262 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~v~~Lp--CGH~fH~~Ci~~wl~~~~~~CPiCrks~~d~~~~~~~ 262 (316)
.+..||||+|.+.. .+++++| |||.|+..|+..++....++||+||+++......|+.
T Consensus 10 ~~~~CpICle~~~~--~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~~ 69 (78)
T 1e4u_A 10 DPVECPLCMEPLEI--DDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKP 69 (78)
T ss_dssp CCCBCTTTCCBCCT--TTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCCS
T ss_pred cCCcCCccCccCcc--ccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhcc
Confidence 46789999996422 2344555 9999999999998765678999999999876554443
No 21
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=1.5e-10 Score=86.11 Aligned_cols=49 Identities=20% Similarity=0.533 Sum_probs=40.7
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
..+..||||++. +. .++.++|||.||..||.+|+.. ..+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~-~~---~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQT-CV---HPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSB-CS---SEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCCCCccCCcc-cC---CCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 346789999996 43 3577899999999999999974 5899999998864
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=1.4e-10 Score=88.15 Aligned_cols=48 Identities=23% Similarity=0.544 Sum_probs=40.1
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCcccc
Q 021215 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 254 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~ 254 (316)
.....||||++. +. .+++++|||+||..||.+|++. ..+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQA-FQ---NPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSB-CC---SEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC
T ss_pred CCCCCCcCCCch-hc---CeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc
Confidence 345689999996 43 3567999999999999999974 689999999986
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=2.7e-10 Score=84.40 Aligned_cols=50 Identities=26% Similarity=0.775 Sum_probs=40.6
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhcc--CCCCCCCCCccccc
Q 021215 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPICSKSVCD 255 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~--~~~~CPiCrks~~d 255 (316)
..+..||||++. +. .+++++|||.||..||..|++. ...+||+||+.+..
T Consensus 18 ~~~~~C~IC~~~-~~---~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDI-LQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSB-CS---SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcc-cC---CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 346789999995 44 4667899999999999999962 45789999998753
No 24
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=1.8e-10 Score=85.90 Aligned_cols=49 Identities=27% Similarity=0.535 Sum_probs=39.5
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
.+..||||++.+.+ ++.+++|||.||..||.+|++. +.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCS
T ss_pred CCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCc
Confidence 35689999996433 3444599999999999999975 6899999998864
No 25
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=2e-10 Score=84.11 Aligned_cols=49 Identities=18% Similarity=0.477 Sum_probs=40.0
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
.+..||||++. +. .++.++|||.||..||.+|++....+||+||+.+..
T Consensus 14 ~~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLV-LC---SPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCE-ES---SCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChH-hc---CeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 35689999985 44 344589999999999999996456789999998764
No 26
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=5.1e-11 Score=87.99 Aligned_cols=49 Identities=22% Similarity=0.734 Sum_probs=41.0
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccch
Q 021215 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDM 256 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d~ 256 (316)
.....||||++. +.. +.+||||.||..|+.+|+. ...+||+||+.+...
T Consensus 13 ~~~~~C~IC~~~-~~~----~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 13 TDEEECCICMDG-RAD----LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCSSSCCS-CCS----EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCC
T ss_pred CCCCCCeeCCcC-ccC----cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCC
Confidence 346789999995 432 7899999999999999998 468999999888754
No 27
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.95 E-value=1.9e-10 Score=86.49 Aligned_cols=50 Identities=22% Similarity=0.669 Sum_probs=40.0
Q ss_pred CCCCcccccccccCcceeEEcC-CCCcccHHhHHHHhccC-CCCCCCCCccccchh
Q 021215 204 HHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREHH-QYACPICSKSVCDMS 257 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~v~~Lp-CGH~fH~~Ci~~wl~~~-~~~CPiCrks~~d~~ 257 (316)
+..||||++. +. +++.++ |||+||..||..|+... ..+||+||+.+...+
T Consensus 15 ~~~C~IC~~~-~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 15 ELLCLICKDI-MT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp GGSCSSSCCC-CT---TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCcCCChH-Hh---CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 5689999995 44 356788 99999999999999742 368999999866443
No 28
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.93 E-value=4.4e-10 Score=94.08 Aligned_cols=46 Identities=33% Similarity=0.889 Sum_probs=39.4
Q ss_pred CCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 205 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 205 ~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
..||||++. +. +++++||||+||..||..|+.. +.+||+||+++..
T Consensus 54 ~~C~iC~~~-~~---~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEY-FI---EAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSB-CS---SEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCC
T ss_pred CCCcccCcc-cC---CceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCC
Confidence 469999995 44 3678999999999999999984 6889999999864
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.92 E-value=4.6e-10 Score=89.22 Aligned_cols=48 Identities=19% Similarity=0.477 Sum_probs=39.6
Q ss_pred CCCCcccccccccCcceeEE-cCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 204 HHDCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~v~~-LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
+..||||++. +. .++. ++|||.||..||.+|+......||+||+++..
T Consensus 22 ~~~C~IC~~~-~~---~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEK-LR---DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSB-CS---SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCcc-cc---CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 4679999995 44 3455 99999999999999998644799999998863
No 30
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.92 E-value=4.7e-10 Score=90.92 Aligned_cols=52 Identities=25% Similarity=0.669 Sum_probs=42.2
Q ss_pred CCCCCcccccccccC---cceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 203 MHHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 203 ~~~~CPIClE~lf~s---~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
.+..||||++.+.+. ++.++.++|||+||..||.+|++. +.+||+||+.+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcc
Confidence 467899999975332 234589999999999999999984 5799999998864
No 31
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.91 E-value=7.2e-10 Score=90.78 Aligned_cols=48 Identities=25% Similarity=0.598 Sum_probs=40.5
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 204 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
+..||||++. +. +++.+||||+||..||..|+......||+||+++..
T Consensus 52 ~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQEL-VF---RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSB-CS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChH-Hc---CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4579999995 44 467789999999999999998656799999998864
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=9.4e-10 Score=79.67 Aligned_cols=43 Identities=26% Similarity=0.871 Sum_probs=35.5
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhcc--CCCCCCCC
Q 021215 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPIC 249 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~--~~~~CPiC 249 (316)
.+..||||++. +. ++++++|||.||..||.+|++. ...+||+|
T Consensus 19 ~~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDI-LQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSB-CS---SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCch-hC---CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 46789999995 44 3567899999999999999974 45789998
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.88 E-value=3e-10 Score=85.17 Aligned_cols=49 Identities=27% Similarity=0.756 Sum_probs=40.1
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccC------CCCCCCCCccccc
Q 021215 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH------QYACPICSKSVCD 255 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~------~~~CPiCrks~~d 255 (316)
.+..||||++. +. ++++++|||+||..|+..|+... ..+||+||+.+..
T Consensus 11 ~~~~C~IC~~~-~~---~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLEL-LT---EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEE-CS---SCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcc-cC---CeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 35789999995 54 35568999999999999998752 5789999998864
No 34
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.86 E-value=1.4e-09 Score=81.98 Aligned_cols=49 Identities=22% Similarity=0.619 Sum_probs=40.1
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccC-----CCCCCCCCccccc
Q 021215 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH-----QYACPICSKSVCD 255 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~-----~~~CPiCrks~~d 255 (316)
.+..||||++. +. .+++++|||.||..|+..|+... ...||+||+.+..
T Consensus 18 ~~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLEL-LK---EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSC-CS---SCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChh-hC---cceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 36789999995 44 34589999999999999998752 5789999998763
No 35
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.86 E-value=1.2e-09 Score=84.60 Aligned_cols=48 Identities=23% Similarity=0.690 Sum_probs=39.3
Q ss_pred CCCCCcccccccccCcceeEEcC-CCCcccHHhHHHHhcc-CCCCCCCCCcccc
Q 021215 203 MHHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREH-HQYACPICSKSVC 254 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~v~~Lp-CGH~fH~~Ci~~wl~~-~~~~CPiCrks~~ 254 (316)
.+..||||++. +. +++++| |||+|+..||.+|+.. ....||+||+++.
T Consensus 12 ~~~~C~IC~~~-~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDI-MT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEE-CS---SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChh-hc---CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 35789999985 54 456889 9999999999999864 3478999999873
No 36
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.84 E-value=1.7e-09 Score=85.09 Aligned_cols=48 Identities=27% Similarity=0.751 Sum_probs=38.8
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 204 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
+..||||++. +.. ++..++|||+||..|+..|+.. +.+||+||..+..
T Consensus 22 ~~~C~IC~~~-~~~--p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEY-FNI--AMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSB-CSS--EEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG
T ss_pred CCCcccCChh-hCC--cCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCCh
Confidence 4689999995 442 3444499999999999999984 6899999998873
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.6e-09 Score=76.57 Aligned_cols=43 Identities=33% Similarity=1.045 Sum_probs=34.8
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhcc--CCCCCCCC
Q 021215 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPIC 249 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~--~~~~CPiC 249 (316)
....||||++. +. +++.++|||.||..||.+|+.. ...+||+|
T Consensus 14 ~~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEY-LK---EPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCB-CS---SCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcc-cC---ccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 35789999996 44 2467899999999999999653 46789998
No 38
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.83 E-value=4.3e-10 Score=93.42 Aligned_cols=50 Identities=18% Similarity=0.501 Sum_probs=0.5
Q ss_pred CCCCccccccccc--------------CcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCcccc
Q 021215 204 HHDCPVCCEYLFE--------------TRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 254 (316)
Q Consensus 204 ~~~CPIClE~lf~--------------s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~ 254 (316)
+..|+||++.+.. ....++.++|||.||..||.+||+. +.+||+||+++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 5678888886532 1113445799999999999999985 689999998764
No 39
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.83 E-value=2.1e-09 Score=85.98 Aligned_cols=48 Identities=31% Similarity=0.714 Sum_probs=39.3
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 204 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
+..||||++. +. +++.+++|||+||..||..|+.. +.+||+||+.+..
T Consensus 15 ~~~C~IC~~~-~~--~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGY-FI--DATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSB-CS--SEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCS
T ss_pred cCCCccCChH-Hh--CcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccc
Confidence 5789999995 44 24444599999999999999985 5899999998863
No 40
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=1.8e-09 Score=81.29 Aligned_cols=49 Identities=29% Similarity=0.745 Sum_probs=40.1
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhcc-----CCCCCCCCCccccc
Q 021215 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-----HQYACPICSKSVCD 255 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~-----~~~~CPiCrks~~d 255 (316)
....||||++. +. .++.++|||.||..|+..|+.. ....||+||..+..
T Consensus 18 ~~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLEL-LT---QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSC-CS---SCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcc-cC---CceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 46789999995 44 3457899999999999999874 25889999988763
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.81 E-value=2.5e-09 Score=91.62 Aligned_cols=48 Identities=21% Similarity=0.613 Sum_probs=39.6
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCcccc
Q 021215 204 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 254 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~ 254 (316)
+..||||++. +.. ++.+++|||+||..||..|+......||+||..+.
T Consensus 54 ~~~C~IC~~~-~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 54 ELMCPICLDM-LKN--TMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHBCTTTSSB-CSS--EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCcccChH-hhC--cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 3489999996 442 45556999999999999999865788999999885
No 42
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=2.2e-09 Score=83.21 Aligned_cols=53 Identities=19% Similarity=0.518 Sum_probs=41.3
Q ss_pred CCCCCCCcccccccccCcceeEEcCCC-----CcccHHhHHHHhccC-CCCCCCCCccccc
Q 021215 201 GAMHHDCPVCCEYLFETRQDVIVLPCG-----HTIHKNCLKEMREHH-QYACPICSKSVCD 255 (316)
Q Consensus 201 ~~~~~~CPIClE~lf~s~~~v~~LpCG-----H~fH~~Ci~~wl~~~-~~~CPiCrks~~d 255 (316)
.+.+..|+||++. ++...+ +++||+ |.||..||++||... ..+||+||..+..
T Consensus 12 ~~~~~~C~IC~~~-~~~~~~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCE-GDDESP-LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCC-CCSSSC-EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCcc-ccCCCe-eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 3456789999986 443433 579996 999999999999753 3689999988763
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.80 E-value=1.1e-09 Score=88.42 Aligned_cols=48 Identities=31% Similarity=0.840 Sum_probs=40.3
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 204 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
+..||||++. +. .++.|+|||+||..||..|+......||+||+.+..
T Consensus 15 ~~~C~iC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEI-LV---EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSB-CS---SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcc-cC---ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4579999985 44 366789999999999999997657899999998863
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.79 E-value=1.4e-09 Score=92.93 Aligned_cols=48 Identities=23% Similarity=0.607 Sum_probs=40.4
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 204 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
...||||++. +. ++++++|||+||..||..|+.....+||+||..+..
T Consensus 78 ~~~C~IC~~~-~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 78 SFMCVCCQEL-VY---QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HTBCTTTSSB-CS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCEeecCChh-hc---CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 4679999995 44 356799999999999999998656789999998874
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.76 E-value=4.6e-09 Score=84.84 Aligned_cols=48 Identities=19% Similarity=0.475 Sum_probs=40.3
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 204 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
+..||||++. +. +++.++|||+||..||.+|+.....+||+||+++..
T Consensus 23 ~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHI-LA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcH-hc---CcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 4679999985 44 356689999999999999998656789999999874
No 46
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.72 E-value=4.4e-09 Score=83.71 Aligned_cols=47 Identities=23% Similarity=0.754 Sum_probs=38.2
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccC--CCCCCCCCcccc
Q 021215 204 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH--QYACPICSKSVC 254 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~--~~~CPiCrks~~ 254 (316)
...||||++. +. .++.++|||.||..|+..|+... ..+||+||..+.
T Consensus 21 ~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLEL-IK---EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCC-CS---SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCcccChh-hc---CeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 4579999995 44 34568999999999999999742 258999998876
No 47
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.72 E-value=5.3e-09 Score=85.15 Aligned_cols=48 Identities=23% Similarity=0.674 Sum_probs=40.2
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 204 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
+..||||++. +. .++.++|||+||..||.+|++....+||+||+++..
T Consensus 18 ~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 18 KYECPICLMA-LR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCcCChh-hc---CeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 5689999985 44 346789999999999999998655699999999875
No 48
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.72 E-value=4.8e-09 Score=84.92 Aligned_cols=53 Identities=25% Similarity=0.664 Sum_probs=42.5
Q ss_pred CCCCCCcccccccccC---cceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 202 AMHHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s---~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
.....|+||++.+... ...++.++|||.||..|+.+|++. +.+||+||+++..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCCh
Confidence 4467899999964331 233478899999999999999985 5799999998874
No 49
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.59 E-value=4.3e-08 Score=88.44 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=42.3
Q ss_pred CCCCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 201 GAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 201 ~~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
......||||++ ++. +++++||||+|++.||..|+.....+||+||.++..
T Consensus 205 ~~~~~~c~i~~~-~~~---dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 205 IPDYLCGKISFE-LMR---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCSTTBCTTTCS-BCS---SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCcccCCcCcCC-Hhc---CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 345778999999 455 577899999999999999998655569999998863
No 50
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.58 E-value=2.1e-08 Score=73.90 Aligned_cols=50 Identities=18% Similarity=0.473 Sum_probs=39.6
Q ss_pred CCCCCCCcccccccccCcceeEEc--CCCCc-ccHHhHHHHhccCCCCCCCCCccccc
Q 021215 201 GAMHHDCPVCCEYLFETRQDVIVL--PCGHT-IHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 201 ~~~~~~CPIClE~lf~s~~~v~~L--pCGH~-fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
...+..|+||++. +. +++++ ||||. |+..|+..|++. +..||+||+++..
T Consensus 5 ~~~~~~C~IC~~~-~~---~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 57 (64)
T 2vje_A 5 LNAIEPCVICQGR-PK---NGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQM 57 (64)
T ss_dssp CGGGSCCTTTSSS-CS---CEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCCE
T ss_pred CCCcCCCCcCCCC-CC---CEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchhc
Confidence 3456789999985 22 34555 99999 899999999874 5789999998864
No 51
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.57 E-value=2.8e-08 Score=77.15 Aligned_cols=48 Identities=15% Similarity=0.231 Sum_probs=41.0
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
.+..||||++ ++. ++++++|||+|.+.||..|+.. ..+||+||.++..
T Consensus 13 ~~~~CpI~~~-~m~---dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDT-LMT---DPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCS-BCS---SEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred hheECcccCc-hhc---CCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCCh
Confidence 4678999999 455 5778999999999999999984 6899999988763
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.57 E-value=1.1e-08 Score=73.36 Aligned_cols=45 Identities=29% Similarity=0.566 Sum_probs=36.7
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCcccc
Q 021215 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 254 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~ 254 (316)
.....|+||++. +. .+++|||||+||..|+..| ..+||+||+.+.
T Consensus 4 ~~~~~C~IC~~~-~~---~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAE-AK---CPKLLPCLHTLCSGCLEAS----GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSS-CB---CCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSS
T ss_pred ccCCCceEeCCc-cC---CeEEcCCCCcccHHHHccC----CCCCCcCCcEee
Confidence 446789999985 54 3578999999999999874 468999998875
No 53
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.54 E-value=1.5e-08 Score=82.31 Aligned_cols=44 Identities=23% Similarity=0.663 Sum_probs=37.2
Q ss_pred CCCCcccccccccCcceeEEc-CCCCcccHHhHHHHhccCCCCCCCCCcccc
Q 021215 204 HHDCPVCCEYLFETRQDVIVL-PCGHTIHKNCLKEMREHHQYACPICSKSVC 254 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~v~~L-pCGH~fH~~Ci~~wl~~~~~~CPiCrks~~ 254 (316)
+..||||++. +. .++++ +|||+||..||..|+. ..||+||+.+.
T Consensus 22 ~~~C~IC~~~-~~---~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNI-LR---EPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSC-CS---SCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred CCCCCCCChH-hh---CccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCc
Confidence 5789999985 54 34566 9999999999999986 78999998885
No 54
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.53 E-value=4.3e-08 Score=78.67 Aligned_cols=48 Identities=15% Similarity=0.247 Sum_probs=41.0
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
.+..||||++ ++. ++++++|||+|.+.||..|+. ...+||+||.++..
T Consensus 28 ~~~~CpI~~~-~m~---dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDT-LMT---DPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCS-BCS---SEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCT
T ss_pred HhhCCcCccC-ccc---CCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCCh
Confidence 4678999998 455 577889999999999999998 46899999998763
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.53 E-value=1.4e-08 Score=85.93 Aligned_cols=47 Identities=19% Similarity=0.448 Sum_probs=38.9
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccc
Q 021215 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV 253 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~ 253 (316)
.+..||||++. +. +++.++|||+||..||.+|++....+||+||+++
T Consensus 30 ~~~~C~IC~~~-~~---~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 30 AKYLCSACRNV-LR---RPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGGBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCcCCCCCChh-hc---CcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 35689999995 44 3467899999999999999986556899999865
No 56
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.50 E-value=7e-08 Score=77.12 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=41.1
Q ss_pred CCCCCcccccccccCcceeEEcCCC-CcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 203 MHHDCPVCCEYLFETRQDVIVLPCG-HTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~v~~LpCG-H~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
.+..||||++ ++. ++++++|| |+|.+.||..|+.. ..+||+||.++..
T Consensus 21 ~~~~CpI~~~-~m~---dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMST-LMC---DPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCS-BCS---SEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCT
T ss_pred HhcCCcCccc-ccc---CCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCCh
Confidence 3678999999 455 57789999 99999999999984 6899999998863
No 57
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.49 E-value=3.8e-08 Score=72.36 Aligned_cols=49 Identities=22% Similarity=0.538 Sum_probs=38.4
Q ss_pred CCCCCCcccccccccCcceeEEc--CCCCc-ccHHhHHHHhccCCCCCCCCCccccc
Q 021215 202 AMHHDCPVCCEYLFETRQDVIVL--PCGHT-IHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~v~~L--pCGH~-fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
.....|+||++... +.+++ ||||. |+..|+..|++. +.+||+||+++..
T Consensus 5 ~~~~~C~IC~~~~~----~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRPR----DGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSBS----CEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcCC----CeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhc
Confidence 34678999998522 33444 99998 999999999864 5789999998864
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.49 E-value=3.2e-08 Score=74.64 Aligned_cols=43 Identities=26% Similarity=0.738 Sum_probs=36.3
Q ss_pred CCCCcccccccccCcceeEEcCCCCc-ccHHhHHHHhccCCCCCCCCCccccc
Q 021215 204 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~v~~LpCGH~-fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
+..|+||++. +. +++.+||||. |+..|+..| ..||+||+.+..
T Consensus 24 ~~~C~iC~~~-~~---~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDR-NI---AIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSS-BC---CEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CCCCCCCCCC-CC---CEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 4679999985 33 4778899999 999999988 579999998865
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.45 E-value=6.7e-08 Score=82.89 Aligned_cols=48 Identities=23% Similarity=0.674 Sum_probs=40.0
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 204 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
+..||||++. +. +++.++|||+|+..||.+|+.....+||+||..+..
T Consensus 18 ~~~C~IC~~~-~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 18 KYECPICLMA-LR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GGBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCChh-hc---CcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 5689999995 44 346689999999999999997555699999998875
No 60
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.43 E-value=1.1e-07 Score=72.98 Aligned_cols=49 Identities=18% Similarity=0.453 Sum_probs=38.4
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccC-CCCCCCCCccccc
Q 021215 204 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH-QYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~-~~~CPiCrks~~d 255 (316)
...|+||.+. +... ..-..|+|.||..||..||+.. +.+||+||..+..
T Consensus 15 i~~C~IC~~~-i~~g--~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSL-LIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCB-CSSS--EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhH-cccC--CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 5789999995 4433 2334899999999999999753 2789999988764
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.40 E-value=2.3e-07 Score=73.08 Aligned_cols=46 Identities=28% Similarity=0.608 Sum_probs=37.1
Q ss_pred CCCCCcccccccccCcceeEEcC-CCCcccHHhHHHHhccC-----CCCCCC--CCcc
Q 021215 203 MHHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREHH-----QYACPI--CSKS 252 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~v~~Lp-CGH~fH~~Ci~~wl~~~-----~~~CPi--Crks 252 (316)
.+..||||++ +|. ++++++ |||+|.+.||.+||... ..+||+ |++.
T Consensus 6 ~~~~CPI~~~-~~~---dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKE-EMK---KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCS-BCS---SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCc-hhc---CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3578999998 455 466775 99999999999999742 468999 9865
No 62
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.33 E-value=2.7e-07 Score=90.57 Aligned_cols=49 Identities=31% Similarity=0.731 Sum_probs=41.0
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
....|+||++. +. .++.+||||.||..|+..|+.....+||+||.++..
T Consensus 331 ~~~~C~ICle~-~~---~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAEN-DK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSS-BC---CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCccCcC-CC---CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 34689999985 33 578899999999999999997446789999998864
No 63
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.30 E-value=7.5e-07 Score=69.53 Aligned_cols=49 Identities=24% Similarity=0.524 Sum_probs=37.2
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhcc-------CCCCCCC--CCcc
Q 021215 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-------HQYACPI--CSKS 252 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~-------~~~~CPi--Crks 252 (316)
....||||++. +....-+.+.+|||.|+..|+..|+.. ...+||. |+..
T Consensus 4 ~~~~C~IC~~~-~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGE-YPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCC-CBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcc-cccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 35689999996 444433344589999999999998753 1358999 9998
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=2.7e-07 Score=69.44 Aligned_cols=43 Identities=26% Similarity=0.738 Sum_probs=34.9
Q ss_pred CCCCcccccccccCcceeEEcCCCCc-ccHHhHHHHhccCCCCCCCCCccccc
Q 021215 204 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~v~~LpCGH~-fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
+..|+||++. +. .++++||||. |+..|+..+ ..||+||+.+..
T Consensus 25 ~~~C~IC~~~-~~---~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDR-NI---AIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSS-CC---CBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred CCCCCcCCCC-CC---CEEEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence 3579999985 33 4678999999 999999643 579999998865
No 65
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.27 E-value=7.9e-07 Score=78.75 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=40.4
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
....||||++ ++. +++++||||+|.+.||..|+.....+||+|+.++..
T Consensus 105 ~~f~CPI~~e-lm~---DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 105 DYLCGKISFE-LMR---EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp GGGBCTTTCS-BCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred HhhcccCccc-cCC---CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 4578999999 455 577889999999999999997533479999988863
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=6.1e-07 Score=67.03 Aligned_cols=46 Identities=33% Similarity=0.717 Sum_probs=37.4
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCc-ccHHhHHHHhccCCCCCCCCCccccch
Q 021215 202 AMHHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCDM 256 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~v~~LpCGH~-fH~~Ci~~wl~~~~~~CPiCrks~~d~ 256 (316)
.....|+||++. + ..+++|||||. |+..|+.. ...||+||..+...
T Consensus 13 ~~~~~C~IC~~~-~---~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNG-T---VNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSS-C---CCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcC-C---CCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhce
Confidence 446789999984 2 36889999999 99999984 25799999988753
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.15 E-value=6.2e-07 Score=68.77 Aligned_cols=44 Identities=34% Similarity=0.836 Sum_probs=36.3
Q ss_pred CCCCcccccccccCcceeEEcCCCCc-ccHHhHHHHhccCCCCCCCCCccccch
Q 021215 204 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCDM 256 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~v~~LpCGH~-fH~~Ci~~wl~~~~~~CPiCrks~~d~ 256 (316)
+..|+||++. + ..++++||||. |+..|+..|. .||+||..+...
T Consensus 18 ~~~C~IC~~~-~---~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEE-E---INSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSS-B---CCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCEE
T ss_pred CCEeEEeCcc-c---CcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhCe
Confidence 4579999985 3 25788999999 9999998763 799999988753
No 68
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.08 E-value=1.5e-06 Score=63.72 Aligned_cols=51 Identities=25% Similarity=0.513 Sum_probs=38.9
Q ss_pred CCCCCCCCcccccccccCcceeEEcCCC--C---cccHHhHHHHhcc-CCCCCCCCCcccc
Q 021215 200 EGAMHHDCPVCCEYLFETRQDVIVLPCG--H---TIHKNCLKEMREH-HQYACPICSKSVC 254 (316)
Q Consensus 200 E~~~~~~CPIClE~lf~s~~~v~~LpCG--H---~fH~~Ci~~wl~~-~~~~CPiCrks~~ 254 (316)
|......|.||++. . ..+ .++||. + .||..||..|+.. .+.+||+|+..+.
T Consensus 2 e~~~~~~CrIC~~~-~--~~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 2 EDEDVPVCWICNEE-L--GNE-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp TTCSCCEETTTTEE-C--SCC-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCEeEEeecC-C--CCc-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45567889999985 2 223 468965 4 8999999999974 4678999998764
No 69
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.93 E-value=1.8e-06 Score=83.80 Aligned_cols=53 Identities=21% Similarity=0.429 Sum_probs=39.3
Q ss_pred CCCCCCcccccccccCccee----EEcCCCCcccHHhHHHHhccC----------CCCCCCCCcccc
Q 021215 202 AMHHDCPVCCEYLFETRQDV----IVLPCGHTIHKNCLKEMREHH----------QYACPICSKSVC 254 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~v----~~LpCGH~fH~~Ci~~wl~~~----------~~~CPiCrks~~ 254 (316)
....+|+||++++.+++.-+ .-++|||.||..||.+|+++. ...||.||+++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 45779999999755423222 135899999999999999641 146999999876
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.93 E-value=4.5e-06 Score=78.19 Aligned_cols=50 Identities=24% Similarity=0.664 Sum_probs=39.9
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhcc-CCCCCCC--CCcccc
Q 021215 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-HQYACPI--CSKSVC 254 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~-~~~~CPi--Crks~~ 254 (316)
..+..||||+++ |. +||+.+.|||+|.+.||..|+.. +..+||+ |++.+.
T Consensus 179 ~~el~CPIcl~~-f~--DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKP-YE--APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSB-CS--SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCc-cc--CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 346789999996 44 25555799999999999999874 3468999 998775
No 71
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.75 E-value=6.6e-06 Score=79.33 Aligned_cols=43 Identities=30% Similarity=0.834 Sum_probs=36.4
Q ss_pred CCCCcccccccccCcceeEEcCCCCc-ccHHhHHHHhccCCCCCCCCCccccc
Q 021215 204 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~v~~LpCGH~-fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
+..|+||++. +. .++.|||||. ||..|+..| ..||+||..+..
T Consensus 295 ~~~C~IC~~~-~~---~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDK-EV---SVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSS-BC---CEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CCCCCccCCc-CC---ceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 5689999995 43 5778899999 999999987 579999998864
No 72
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.56 E-value=3.6e-05 Score=56.41 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=37.7
Q ss_pred CCCCCcccccccccCcceeEEc-CCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 203 MHHDCPVCCEYLFETRQDVIVL-PCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~v~~L-pCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
+...|||+++. +. +++++ ++||+|-+.+|.+|++. +.+||+.+.++..
T Consensus 2 ~~~~CpIs~~~-m~---dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~ 50 (61)
T 2bay_A 2 SHMLCAISGKV-PR---RPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSI 50 (61)
T ss_dssp --CCCTTTCSC-CS---SEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCG
T ss_pred CeEEecCCCCC-CC---CCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCCh
Confidence 35689999994 44 34555 99999999999999975 4679999988763
No 73
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.53 E-value=5.7e-05 Score=61.31 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=39.5
Q ss_pred CCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccchh
Q 021215 206 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMS 257 (316)
Q Consensus 206 ~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d~~ 257 (316)
.|++|.-++.. ..+++||+|+|+.+|+..|.+....+||.|+.++.+.+
T Consensus 3 fC~~C~~Pi~i---ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIKV---YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCSE---EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeEE---EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 47888754322 56789999999999999998766789999999988653
No 74
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.88 E-value=0.0052 Score=56.22 Aligned_cols=49 Identities=20% Similarity=0.510 Sum_probs=36.5
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccC-CCCCCCCCccccc
Q 021215 204 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH-QYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~-~~~CPiCrks~~d 255 (316)
-..|.||.+-+.. ...-..|+|.||..|+..|++.. +.+||.|+..|..
T Consensus 180 i~~C~iC~~iv~~---g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSS---CEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhC---CcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 4679999985432 22223499999999999998753 4689999998763
No 75
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=92.59 E-value=0.043 Score=42.82 Aligned_cols=28 Identities=29% Similarity=0.791 Sum_probs=16.3
Q ss_pred ecCCCCcccccccCCCCCCCccceEecCccccc
Q 021215 121 ICSLCGTEQKVQQVCVNCGVCMGEYFCESCKLF 153 (316)
Q Consensus 121 ~C~~C~~eq~v~~~C~~Cg~~f~~YfC~~Ckl~ 153 (316)
+|..|+.++.+ |..||+. .|||..|+=.
T Consensus 33 fCPeCgq~Le~---lkACGA~--~yFC~~C~~L 60 (81)
T 2jrp_A 33 LCPDCRQPLQV---LKACGAV--DYFCQNGHGL 60 (81)
T ss_dssp ECSSSCSCCCE---EEETTEE--EECCTTTTCC
T ss_pred cCcchhhHHHH---HHhcCCc--CeeeccCCCE
Confidence 55555554333 5555554 7888888643
No 76
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.99 E-value=0.061 Score=41.70 Aligned_cols=32 Identities=22% Similarity=0.481 Sum_probs=24.8
Q ss_pred CCCCcccccccccCcceeEE--cCCCCcccHHhHHHH
Q 021215 204 HHDCPVCCEYLFETRQDVIV--LPCGHTIHKNCLKEM 238 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~v~~--LpCGH~fH~~Ci~~w 238 (316)
+..|+||++..+. +.+. +.|||+|+..|+..+
T Consensus 3 e~~C~~C~~~~~~---~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQ---DAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCC---BCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCC---CceEECCcCChHHhHHHCHHH
Confidence 5679999974333 3334 999999999999983
No 77
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=88.93 E-value=0.59 Score=39.74 Aligned_cols=50 Identities=22% Similarity=0.465 Sum_probs=34.7
Q ss_pred cCCCCCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhc----------cCCCCCCCCCcc
Q 021215 199 VEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMRE----------HHQYACPICSKS 252 (316)
Q Consensus 199 iE~~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~----------~~~~~CPiCrks 252 (316)
.+...+..|.||.+ .++-+.-=.|.-+||..||..-+. .+.-.||+|+..
T Consensus 58 d~Dg~~d~C~vC~~----GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 58 DSDGMDEQCRWCAE----GGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CTTSCBCSCSSSCC----CSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred cCCCCCCeecccCC----CCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 35667889999997 232111126889999999996542 245779999954
No 78
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=86.56 E-value=0.24 Score=41.65 Aligned_cols=37 Identities=22% Similarity=0.621 Sum_probs=29.5
Q ss_pred cceEEcCCCCCCccc-------------cceee------eecCCCCCCccccccCC
Q 021215 280 KVWILCNDCGKTSNV-------------QFHVL------AQKCPNCKSYNTRLTRG 316 (316)
Q Consensus 280 ~~~IlCnDC~~~s~v-------------~~H~l------g~kC~~C~SyNT~~~~~ 316 (316)
.+...|.+|+..... .+|++ ..+||.|||++..+++|
T Consensus 68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i~~G 123 (139)
T 3a43_A 68 EAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVVKG 123 (139)
T ss_dssp CCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEEEES
T ss_pred CCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccEEecC
Confidence 467899999987532 56776 68999999999987765
No 79
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=86.31 E-value=0.32 Score=39.04 Aligned_cols=45 Identities=27% Similarity=0.585 Sum_probs=35.3
Q ss_pred CCCCcccccccccCcceeEEcCCC-CcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 204 HHDCPVCCEYLFETRQDVIVLPCG-HTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~v~~LpCG-H~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
..+|-.|.- ... ..+.|. |.++..|+..+|+. +.+||||.+++..
T Consensus 28 ~~nCKsCWf---~~k---~LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPt 73 (99)
T 2ko5_A 28 PQFCKSCWF---ENK---GLVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPT 73 (99)
T ss_dssp CCCCCSSCS---CCS---SEEECSSCEEEHHHHHHTCSS-SSEETTTTEECCC
T ss_pred cccChhhcc---ccC---CeeeecchhhHHHHHHHHHhh-ccCCcccCCcCCc
Confidence 467888873 221 266785 99999999999985 6899999999875
No 80
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=85.88 E-value=0.3 Score=38.86 Aligned_cols=82 Identities=22% Similarity=0.549 Sum_probs=42.3
Q ss_pred CCCcceecCC-cceeeccCCccee-----ecccc----ccccccCCCCCCCCcccccccccCcceeEEcCCCCcccHHhH
Q 021215 166 GCGICRIGGC-DNFFHCNKCRCCY-----SMLLK----NSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCL 235 (316)
Q Consensus 166 ~CgiCR~G~~-~~ffHC~~C~~C~-----s~~l~----~~H~CiE~~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci 235 (316)
.|.||.-+|. ++...|+.|+.-| .+.+. ..=.|.+= ..|.||.+. .+...-+.--.|.-.||..|+
T Consensus 9 ~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C---~~C~~C~~~-~~~~~ll~Cd~C~~~yH~~Cl 84 (111)
T 2ysm_A 9 NCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPEC---KVCQNCKQS-GEDSKMLVCDTCDKGYHTFCL 84 (111)
T ss_dssp CBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTT---CCCTTTCCC-SCCTTEEECSSSCCEEEGGGS
T ss_pred CCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcC---CcccccCcc-CCCCCeeECCCCCcHHhHHhc
Confidence 3555655552 4566777766544 22221 11122210 146777753 111111112268899999999
Q ss_pred HHHhcc---CCCCCCCCCc
Q 021215 236 KEMREH---HQYACPICSK 251 (316)
Q Consensus 236 ~~wl~~---~~~~CPiCrk 251 (316)
.+-+.. +...||.|+.
T Consensus 85 ~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 85 QPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp SSCCSSCCSSCCCCHHHHC
T ss_pred CCccccCCCCCcCCcCCcC
Confidence 864432 3466887764
No 81
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=82.50 E-value=0.36 Score=38.82 Aligned_cols=74 Identities=18% Similarity=0.459 Sum_probs=41.7
Q ss_pred CCcceeeccCCcceeecc-c-----------cccccccCCCCCCCCcccccccccCcceeEE-cCCCCcccHHhHHHHhc
Q 021215 174 GCDNFFHCNKCRCCYSML-L-----------KNSHPCVEGAMHHDCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEMRE 240 (316)
Q Consensus 174 ~~~~ffHC~~C~~C~s~~-l-----------~~~H~CiE~~~~~~CPIClE~lf~s~~~v~~-LpCGH~fH~~Ci~~wl~ 240 (316)
.+++...|..|+.-|-.. | ...=.|.+= ..|.||.+. ......++. -.|...||..|+.+-|.
T Consensus 22 ~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~vC~~~-~~~~~~ll~Cd~C~~~yH~~Cl~p~l~ 97 (112)
T 3v43_A 22 KPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIEC---KTCSSCRDQ-GKNADNMLFCDSCDRGFHMECCDPPLT 97 (112)
T ss_dssp CCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTT---CCBTTTCCC-CCTTCCCEECTTTCCEECGGGCSSCCS
T ss_pred CchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccC---CccccccCc-CCCccceEEcCCCCCeeecccCCCCCC
Confidence 456777777777655321 1 122334321 157888752 111111211 26889999999987543
Q ss_pred c---CCCCCCCCCc
Q 021215 241 H---HQYACPICSK 251 (316)
Q Consensus 241 ~---~~~~CPiCrk 251 (316)
. +...||.|+.
T Consensus 98 ~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 98 RMPKGMWICQICRP 111 (112)
T ss_dssp SCCSSCCCCTTTSC
T ss_pred CCCCCCeECCCCCC
Confidence 2 3467999974
No 82
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=80.06 E-value=0.72 Score=37.31 Aligned_cols=35 Identities=34% Similarity=0.624 Sum_probs=27.9
Q ss_pred cceEEcCCCCCCccccceeeee-cCCCCCCccccccCC
Q 021215 280 KVWILCNDCGKTSNVQFHVLAQ-KCPNCKSYNTRLTRG 316 (316)
Q Consensus 280 ~~~IlCnDC~~~s~v~~H~lg~-kC~~C~SyNT~~~~~ 316 (316)
.+...|.+|+......- ... +||.|+|.+.++++|
T Consensus 71 p~~~~C~~CG~~~e~~~--~~~~~CP~Cgs~~~~i~~G 106 (119)
T 2kdx_A 71 KVELECKDCSHVFKPNA--LDYGVCEKCHSKNVIITQG 106 (119)
T ss_dssp CCEEECSSSSCEECSCC--STTCCCSSSSSCCCEEEES
T ss_pred cceEEcCCCCCEEeCCC--CCCCcCccccCCCcEEecC
Confidence 56789999998876542 245 899999999998765
No 83
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=78.04 E-value=4.4 Score=31.96 Aligned_cols=32 Identities=22% Similarity=0.727 Sum_probs=19.9
Q ss_pred CeeecCCC---CcceecC-CcceeeccCCcceeecc
Q 021215 160 KQYHCDGC---GICRIGG-CDNFFHCNKCRCCYSML 191 (316)
Q Consensus 160 ~~yHC~~C---giCR~G~-~~~ffHC~~C~~C~s~~ 191 (316)
..+.|+.| .+|+.++ .+....|+.|+.-|-+.
T Consensus 47 ~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~ 82 (111)
T 2ysm_A 47 AGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHTF 82 (111)
T ss_dssp TTCCCTTTCCCTTTCCCSCCTTEEECSSSCCEEEGG
T ss_pred cCccCCcCCcccccCccCCCCCeeECCCCCcHHhHH
Confidence 45666654 4555554 24588888888766543
No 84
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=76.74 E-value=1.3 Score=35.77 Aligned_cols=9 Identities=33% Similarity=0.955 Sum_probs=6.0
Q ss_pred ceEecCccc
Q 021215 143 GEYFCESCK 151 (316)
Q Consensus 143 ~~YfC~~Ck 151 (316)
+.|||..|+
T Consensus 80 vdYFC~~ch 88 (101)
T 2jne_A 80 VDYFCQHGH 88 (101)
T ss_dssp EEEEETTTT
T ss_pred cchhhccCC
Confidence 567777665
No 85
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=76.60 E-value=0.34 Score=39.04 Aligned_cols=67 Identities=22% Similarity=0.456 Sum_probs=45.6
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccchhHHHHHhHHHHHcCCCChhhhcCcce
Q 021215 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVW 282 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d~~~~~~~lD~~i~~~pmP~ey~~~~~~ 282 (316)
|+..||+|...|...+ |+.++..|-..+.. ...||.|..++..+.+ =..++
T Consensus 31 M~~~CP~Cq~eL~~~g--------~~~hC~~C~~~f~~--~a~CPdC~q~LevLkA-------------------CGAvd 81 (101)
T 2jne_A 31 MELHCPQCQHVLDQDN--------GHARCRSCGEFIEM--KALCPDCHQPLQVLKA-------------------CGAVD 81 (101)
T ss_dssp CCCBCSSSCSBEEEET--------TEEEETTTCCEEEE--EEECTTTCSBCEEEEE-------------------TTEEE
T ss_pred ccccCccCCCcceecC--------CEEECccccchhhc--cccCcchhhHHHHHHH-------------------hcCcc
Confidence 6789999997653321 44457777766654 3679999998876432 22478
Q ss_pred EEcCCCCC---Ccccccee
Q 021215 283 ILCNDCGK---TSNVQFHV 298 (316)
Q Consensus 283 IlCnDC~~---~s~v~~H~ 298 (316)
.+||.|.+ ++.|.|.+
T Consensus 82 YFC~~chgLiSKkRV~F~~ 100 (101)
T 2jne_A 82 YFCQHGHGLISKKRVEFVL 100 (101)
T ss_dssp EEETTTTEEECTTTSEEEE
T ss_pred hhhccCCceeecceEEEEe
Confidence 99999984 66666653
No 86
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=75.56 E-value=4.2 Score=32.26 Aligned_cols=56 Identities=18% Similarity=0.419 Sum_probs=41.8
Q ss_pred cCCCCCCCCcccccccccCcceeEEc---CCCCcccHHhHHHHhccCCCCCCCCCcccc
Q 021215 199 VEGAMHHDCPVCCEYLFETRQDVIVL---PCGHTIHKNCLKEMREHHQYACPICSKSVC 254 (316)
Q Consensus 199 iE~~~~~~CPIClE~lf~s~~~v~~L---pCGH~fH~~Ci~~wl~~~~~~CPiCrks~~ 254 (316)
+.......|.||.+++-...+.-.+. -|+-.+++.|++--.+..+..||.|+..+.
T Consensus 11 ~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 11 LKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred ccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 44455689999999865443333333 568889999999988777889999997664
No 87
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=74.22 E-value=0.31 Score=39.31 Aligned_cols=83 Identities=20% Similarity=0.542 Sum_probs=46.7
Q ss_pred CCCCcceecC--------CcceeeccCCccee-----eccc-------cccccccCCCCCCCCcccccccccCcceeEEc
Q 021215 165 DGCGICRIGG--------CDNFFHCNKCRCCY-----SMLL-------KNSHPCVEGAMHHDCPVCCEYLFETRQDVIVL 224 (316)
Q Consensus 165 ~~CgiCR~G~--------~~~ffHC~~C~~C~-----s~~l-------~~~H~CiE~~~~~~CPIClE~lf~s~~~v~~L 224 (316)
+.|+||.-|+ +++...|+.|+.-+ ...+ ...=.|.+= ..|.||... .. . ..+++
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~~C~~~-~~-~-~~ll~ 75 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC---KSCILCGTS-EN-D-DQLLF 75 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGG---CCCTTTTCC-TT-T-TTEEE
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCcccc---CccCccccc-CC-C-CceEE
Confidence 3466665543 45788888887654 2211 112233321 257888763 11 1 12222
Q ss_pred --CCCCcccHHhHHHHhcc---CCCCCCCCCccc
Q 021215 225 --PCGHTIHKNCLKEMREH---HQYACPICSKSV 253 (316)
Q Consensus 225 --pCGH~fH~~Ci~~wl~~---~~~~CPiCrks~ 253 (316)
.|...||..|+.+=|.. +...||.|...+
T Consensus 76 Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 76 CDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred cCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 68899999999864332 345688886533
No 88
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=71.59 E-value=2.9 Score=30.72 Aligned_cols=45 Identities=20% Similarity=0.395 Sum_probs=30.5
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHhHHHHhcc---CCCCCCCCCcc
Q 021215 204 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSKS 252 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~---~~~~CPiCrks 252 (316)
...|.||.+. ++-+.=-.|...||..|++..|.. +...||.|+..
T Consensus 12 ~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 4569999752 221111268899999999987653 34679999753
No 89
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=68.96 E-value=0.98 Score=36.00 Aligned_cols=29 Identities=28% Similarity=0.698 Sum_probs=20.3
Q ss_pred EcCCCCcccHHhHHHHhcc-------CCCCCCCCCc
Q 021215 223 VLPCGHTIHKNCLKEMREH-------HQYACPICSK 251 (316)
Q Consensus 223 ~LpCGH~fH~~Ci~~wl~~-------~~~~CPiCrk 251 (316)
--.|...+|..|+...... ..+.||.|+.
T Consensus 78 C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 78 CCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp ETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred eeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 3578999999998754321 2377999984
No 90
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=64.09 E-value=7.4 Score=32.45 Aligned_cols=51 Identities=24% Similarity=0.473 Sum_probs=34.1
Q ss_pred cCCCCCCCCcccccccccCcceeEEcCCCCcccHHhHHHHh----------ccCCCCCCCCCccc
Q 021215 199 VEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMR----------EHHQYACPICSKSV 253 (316)
Q Consensus 199 iE~~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl----------~~~~~~CPiCrks~ 253 (316)
.+...+..|.||.+ .++-+.==.|-..||..|+..-+ ..+.-.|++|+..-
T Consensus 52 d~Dg~~~~C~vC~d----GG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~p 112 (129)
T 3ql9_A 52 DSDGMDEQCRWCAE----GGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEP 112 (129)
T ss_dssp CTTSCBSSCTTTCC----CSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGG
T ss_pred CCCCCCCcCeecCC----CCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHH
Confidence 45667788999996 22211112678999999999642 12457899998543
No 91
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=62.06 E-value=1.4 Score=31.54 Aligned_cols=50 Identities=26% Similarity=0.470 Sum_probs=30.9
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhc----cCCCCCCCCCcc
Q 021215 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMRE----HHQYACPICSKS 252 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~----~~~~~CPiCrks 252 (316)
....||||.....+...-+.--.|...||..|+.--.. ...|.||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 45679999874222221111226788999999875321 246889999753
No 92
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=54.70 E-value=8.3 Score=27.46 Aligned_cols=10 Identities=30% Similarity=0.913 Sum_probs=6.9
Q ss_pred cccCCCCCCC
Q 021215 131 VQQVCVNCGV 140 (316)
Q Consensus 131 v~~~C~~Cg~ 140 (316)
....||.||.
T Consensus 17 ~~~fCPkCG~ 26 (55)
T 2k4x_A 17 KHRFCPRCGP 26 (55)
T ss_dssp SSCCCTTTTT
T ss_pred ccccCcCCCC
Confidence 3567888876
No 93
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=51.04 E-value=9.1 Score=27.32 Aligned_cols=46 Identities=26% Similarity=0.595 Sum_probs=30.4
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhc---cCCCCCCCCCc
Q 021215 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMRE---HHQYACPICSK 251 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~---~~~~~CPiCrk 251 (316)
..+..|.||.+. .+-+.--.|.-.||..|+..-+. .+...||.|.+
T Consensus 9 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 446789999862 11111126778999999997443 23567999975
No 94
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=50.29 E-value=7.1 Score=27.29 Aligned_cols=10 Identities=30% Similarity=0.896 Sum_probs=7.1
Q ss_pred cccCCCCCCC
Q 021215 131 VQQVCVNCGV 140 (316)
Q Consensus 131 v~~~C~~Cg~ 140 (316)
.-..||.||.
T Consensus 18 ~~k~CP~CG~ 27 (50)
T 3j20_Y 18 KNKFCPRCGP 27 (50)
T ss_dssp SSEECSSSCS
T ss_pred ecccCCCCCC
Confidence 4467888877
No 95
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=49.93 E-value=5.1 Score=34.09 Aligned_cols=29 Identities=31% Similarity=0.833 Sum_probs=19.7
Q ss_pred EecCccccccCCCCCCeeecCCCCcceec
Q 021215 145 YFCESCKLFDDDTSKKQYHCDGCGICRIG 173 (316)
Q Consensus 145 YfC~~Ckl~ddd~~k~~yHC~~CgiCR~G 173 (316)
|-|+.|.+=--...++-|||+.||+|.--
T Consensus 99 yHC~~CgiCR~G~~~~ffHC~~C~~C~s~ 127 (143)
T 2dkt_A 99 YHCESCGICRIGPKEDFFHCLKCNLCLTT 127 (143)
T ss_dssp EEETTTTEEEESCGGGEEEETTTTEEEEG
T ss_pred ecCCCCCceeccCCcCcEECCcCCeeecc
Confidence 54544444433346889999999999654
No 96
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.63 E-value=11 Score=28.42 Aligned_cols=64 Identities=23% Similarity=0.551 Sum_probs=38.0
Q ss_pred CcceeeccCCcceeeccccccccccCCCCCCCCcccccccccCcceeEEc--CCCCcccHHhHHHHhcc---C-CCCCCC
Q 021215 175 CDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMREH---H-QYACPI 248 (316)
Q Consensus 175 ~~~ffHC~~C~~C~s~~l~~~H~CiE~~~~~~CPIClE~lf~s~~~v~~L--pCGH~fH~~Ci~~wl~~---~-~~~CPi 248 (316)
+.++..|..|+. ...=.|. +..|.||... .+.. .+++ .|.-.||..|+.+=|.. + .-.||.
T Consensus 7 ~~~~~~c~~C~~------~~~w~C~----~c~C~vC~~~--~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~ 73 (77)
T 2e6s_A 7 GRNDTECDLCGG------DPEKKCH----SCSCRVCGGK--HEPN-MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPS 73 (77)
T ss_dssp CCCCCCCTTTCS------CSSSCCS----SSSCSSSCCC--CCST-TEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTT
T ss_pred ccCCccChhhcC------CCCeECC----CCCCcCcCCc--CCCC-CEEEcCCCCccccccccCCCccCCCCCCCcCCcC
Confidence 356666766654 1233454 3378899852 1111 2222 67899999999864332 2 457888
Q ss_pred CCc
Q 021215 249 CSK 251 (316)
Q Consensus 249 Crk 251 (316)
|..
T Consensus 74 C~~ 76 (77)
T 2e6s_A 74 CKT 76 (77)
T ss_dssp TCC
T ss_pred ccC
Confidence 864
No 97
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=47.45 E-value=4.5 Score=29.79 Aligned_cols=47 Identities=23% Similarity=0.508 Sum_probs=30.9
Q ss_pred CCCCcccccccccCcceeEEc--CCCCcccHHhHHHHhcc---CCCCCCCCCccc
Q 021215 204 HHDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMREH---HQYACPICSKSV 253 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~v~~L--pCGH~fH~~Ci~~wl~~---~~~~CPiCrks~ 253 (316)
...|+||... .. + ..+++ .|.-.||..|+..-+.. ..+.||.|+..+
T Consensus 18 ~~~C~~C~~~-~~-~-~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 18 IWICPGCNKP-DD-G-SPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp EECBTTTTBC-CS-S-CCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CcCCCCCCCC-CC-C-CCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 3469999864 22 2 12222 67899999999864432 368899998644
No 98
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=46.61 E-value=13 Score=25.19 Aligned_cols=45 Identities=24% Similarity=0.651 Sum_probs=27.1
Q ss_pred CCcccccccccCcceeEE-cCCCCcccHHhHHHHhcc---CCCCCCCCCcc
Q 021215 206 DCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEMREH---HQYACPICSKS 252 (316)
Q Consensus 206 ~CPIClE~lf~s~~~v~~-LpCGH~fH~~Ci~~wl~~---~~~~CPiCrks 252 (316)
.|.||.+. .....++. -.|.-.||..|+.+=+.. +...||.|+..
T Consensus 2 ~C~vC~~~--~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKK--GEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCS--SCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCC--CCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 47777752 11111221 268899999999763332 34679999753
No 99
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=46.05 E-value=7.4 Score=31.98 Aligned_cols=16 Identities=38% Similarity=0.816 Sum_probs=12.1
Q ss_pred CCCCCCCCccccchhH
Q 021215 243 QYACPICSKSVCDMSK 258 (316)
Q Consensus 243 ~~~CPiCrks~~d~~~ 258 (316)
.|.||+|.+.+.....
T Consensus 161 ~~~C~~C~~~f~~~~~ 176 (190)
T 2i13_A 161 PYKCPECGKSFSRRDA 176 (190)
T ss_dssp CEECTTTCCEESSHHH
T ss_pred CeECCCCCCccCCHHH
Confidence 4789999988876543
No 100
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=41.11 E-value=7.7 Score=27.72 Aligned_cols=48 Identities=21% Similarity=0.450 Sum_probs=30.1
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhcc---CCCCCCCCCccc
Q 021215 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSKSV 253 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~---~~~~CPiCrks~ 253 (316)
..+..|.||.+. +.-+.--.|.-.||..|+..-+.. +...||.|....
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 446678889852 111111157889999999864332 346799998643
No 101
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=40.89 E-value=11 Score=33.06 Aligned_cols=50 Identities=18% Similarity=0.547 Sum_probs=32.1
Q ss_pred CCCcccccccccCcc-eeEEc---CCCCcccHHhHHHH------hc----cCCCCCCCCCccccc
Q 021215 205 HDCPVCCEYLFETRQ-DVIVL---PCGHTIHKNCLKEM------RE----HHQYACPICSKSVCD 255 (316)
Q Consensus 205 ~~CPIClE~lf~s~~-~v~~L---pCGH~fH~~Ci~~w------l~----~~~~~CPiCrks~~d 255 (316)
..||||... +...+ ...++ .|...||..|..-- ++ ...|.||.|+..-..
T Consensus 3 ~~CpiC~k~-Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 3 NFCPLCDKC-YDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CBCTTTCCB-CTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred CcCCCCcCc-cCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 469999874 44332 12233 57899999998531 11 026999999987664
No 102
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=40.67 E-value=8.4 Score=33.67 Aligned_cols=45 Identities=20% Similarity=0.475 Sum_probs=31.2
Q ss_pred CCCCCCcccccccccCcceeEEc--CCCCcccHHhHHHHhcc---CCCCCCCCCcc
Q 021215 202 AMHHDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMREH---HQYACPICSKS 252 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~v~~L--pCGH~fH~~Ci~~wl~~---~~~~CPiCrks 252 (316)
..+..|.||.+. + . +++ .|.-.||..|+.+-+.. +...||.|+..
T Consensus 5 ~~~~~C~~C~~~----g-~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 5 PNEDWCAVCQNG----G-D-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SSCSSBTTTCCC----E-E-EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCC----C-c-eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 446779999852 2 2 222 57899999999876542 34679999864
No 103
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=40.13 E-value=20 Score=34.92 Aligned_cols=69 Identities=17% Similarity=0.428 Sum_probs=45.1
Q ss_pred ccCCcceeeccccccccccCCCCCCCCcccccccccCcceeEEc--CCCCcccHHhHHHHhcc---------CCCCCCCC
Q 021215 181 CNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMREH---------HQYACPIC 249 (316)
Q Consensus 181 C~~C~~C~s~~l~~~H~CiE~~~~~~CPIClE~lf~s~~~v~~L--pCGH~fH~~Ci~~wl~~---------~~~~CPiC 249 (316)
---|..|...-+.....-.+...+..|-||.+- ++-+.-= .|...|+..||+.++.. ..-.|=+|
T Consensus 70 v~lC~~Ck~~y~~~~f~~D~DG~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C 145 (386)
T 2pv0_B 70 GGICAPCKDKFLDALFLYDDDGYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLC 145 (386)
T ss_dssp SBCCHHHHHHHHTTTTCBCSSSSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTT
T ss_pred cchhhHHHHHHhccCcccCCCCCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEc
Confidence 444555555545555566678889999999972 2211112 68899999999998732 23567777
Q ss_pred Cccc
Q 021215 250 SKSV 253 (316)
Q Consensus 250 rks~ 253 (316)
...-
T Consensus 146 ~p~p 149 (386)
T 2pv0_B 146 LPSS 149 (386)
T ss_dssp SSCC
T ss_pred CCcc
Confidence 7443
No 104
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=39.59 E-value=16 Score=28.22 Aligned_cols=26 Identities=19% Similarity=0.570 Sum_probs=15.9
Q ss_pred eeecCCCCcccccccCCCCCCCccce
Q 021215 119 QVICSLCGTEQKVQQVCVNCGVCMGE 144 (316)
Q Consensus 119 ~V~C~~C~~eq~v~~~C~~Cg~~f~~ 144 (316)
...|..|+..-+....||.||..+..
T Consensus 18 ~~~C~~C~~~~~~~afCPeCgq~Le~ 43 (81)
T 2jrp_A 18 TAHCETCAKDFSLQALCPDCRQPLQV 43 (81)
T ss_dssp EEECTTTCCEEEEEEECSSSCSCCCE
T ss_pred ceECccccccCCCcccCcchhhHHHH
Confidence 44566666665554466666666654
No 105
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=38.63 E-value=14 Score=25.86 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=11.3
Q ss_pred ecCCCCcccc-------cccCCCCCCCc
Q 021215 121 ICSLCGTEQK-------VQQVCVNCGVC 141 (316)
Q Consensus 121 ~C~~C~~eq~-------v~~~C~~Cg~~ 141 (316)
.|+.|+++.+ ++-.||.||-.
T Consensus 5 ~C~rCg~~fs~~el~~lP~IrCpyCGyr 32 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLPGVRCPYCGYK 32 (48)
T ss_dssp CCCCTTTTCCCCCSCCCSSSCCTTTCCS
T ss_pred EeeccCCCccHHHHhhCCCcccCccCcE
Confidence 4666655543 23466666643
No 106
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=38.52 E-value=35 Score=24.65 Aligned_cols=27 Identities=19% Similarity=0.538 Sum_probs=21.9
Q ss_pred ccCceeecCCCCccccc-ccCCCCCCCc
Q 021215 115 HEVNQVICSLCGTEQKV-QQVCVNCGVC 141 (316)
Q Consensus 115 ~~v~~V~C~~C~~eq~v-~~~C~~Cg~~ 141 (316)
+....++|+.|....++ +..|..||..
T Consensus 15 ~~~~k~ICrkC~ARnp~~A~~CRKCg~~ 42 (56)
T 2ayj_A 15 RVFLKKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp CSCCCEEETTTCCEECTTCSSCTTTCCC
T ss_pred HHhchhhhccccCcCCcccccccCCCCC
Confidence 34468999999999987 7889888854
No 107
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=36.64 E-value=29 Score=24.71 Aligned_cols=15 Identities=20% Similarity=0.516 Sum_probs=8.6
Q ss_pred cceeeccCCcceeec
Q 021215 176 DNFFHCNKCRCCYSM 190 (316)
Q Consensus 176 ~~ffHC~~C~~C~s~ 190 (316)
+.-|.|..|+.-+..
T Consensus 62 ~~~~~C~~C~~~f~~ 76 (96)
T 2dmd_A 62 ERPFKCQICPYASRN 76 (96)
T ss_dssp CCCEECSSSSCEESS
T ss_pred CCCccCCCCCCccCC
Confidence 445666666665543
No 108
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=36.58 E-value=46 Score=21.23 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=10.1
Q ss_pred CCCCCCCCccccchhH
Q 021215 243 QYACPICSKSVCDMSK 258 (316)
Q Consensus 243 ~~~CPiCrks~~d~~~ 258 (316)
.|.|++|.+.+.....
T Consensus 4 ~~~C~~C~~~f~~~~~ 19 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYY 19 (57)
T ss_dssp -CBCTTTCCBCSCHHH
T ss_pred CccCCCCcchhCChHH
Confidence 3677777777765443
No 109
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=36.00 E-value=10 Score=26.19 Aligned_cols=45 Identities=20% Similarity=0.425 Sum_probs=26.4
Q ss_pred CCCcccccccccCcceeEE-c-CCCCcccHHhHHHHh---ccCCCCCCCCC
Q 021215 205 HDCPVCCEYLFETRQDVIV-L-PCGHTIHKNCLKEMR---EHHQYACPICS 250 (316)
Q Consensus 205 ~~CPIClE~lf~s~~~v~~-L-pCGH~fH~~Ci~~wl---~~~~~~CPiCr 250 (316)
-.|+||... ++.....+. - .|.-.||..|+.--. ....|.||.|+
T Consensus 3 c~cc~C~~p-~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 3 CAAQNCQRP-CKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CSCTTCCCC-CCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred ccCCCCcCc-cCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 357888764 222222222 2 477899999976421 12568999985
No 110
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=35.94 E-value=17 Score=30.54 Aligned_cols=24 Identities=29% Similarity=0.930 Sum_probs=16.9
Q ss_pred cccccCCCC--CCC--cc----ceEecCcccc
Q 021215 129 QKVQQVCVN--CGV--CM----GEYFCESCKL 152 (316)
Q Consensus 129 q~v~~~C~~--Cg~--~f----~~YfC~~Ckl 152 (316)
+.....||+ ||. -| +|+||++|.+
T Consensus 115 ~~~~~~c~~~~cg~g~fma~h~~r~~cgkc~~ 146 (152)
T 3u5c_f 115 TKLRRECSNPTCGAGVFLANHKDRLYCGKCHS 146 (152)
T ss_dssp ECCSCBCCSTTSCSSSBEEECSSCEEESSSSS
T ss_pred EECcCcCCCccCCCceEecccCCCcccCCCce
Confidence 334578999 987 33 5788888864
No 111
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=35.48 E-value=60 Score=33.89 Aligned_cols=82 Identities=26% Similarity=0.581 Sum_probs=52.4
Q ss_pred ccccccCCCCCCCCccccccccc------CcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccchhHHHHH-----
Q 021215 194 NSHPCVEGAMHHDCPVCCEYLFE------TRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEK----- 262 (316)
Q Consensus 194 ~~H~CiE~~~~~~CPIClE~lf~------s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d~~~~~~~----- 262 (316)
++-+|....-...||+|.-.+.+ ......-|.||--||.+|++.+.+. +|+-.+.-..|+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~c~~c~~~~~~~--------~~~~~~~~~~w~~~~~~~ 74 (776)
T 4gut_A 3 GSRKCEKAGCTATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRS--------HKDGYDKYTTWKKIWTSN 74 (776)
T ss_dssp SBSSBSSTTCCCSSCCBSCCCSTTCCTTSCBSCEEEEETTEEEEHHHHHHHHST--------TSTTHHHHHHHHHHHHHT
T ss_pred CccccccCCCcccccHHHHHHHHHHHhCCCCcceeEeccccchhHHHHHHHhcc--------CcchhHHHHHHHHHHHhC
Confidence 35677776667889999854421 1123567899999999999998764 2222222234544
Q ss_pred ------hHHHHHcCCCChhhhcCcceEEcC--CCCC
Q 021215 263 ------YDREIAATPMPEAYLNKKVWILCN--DCGK 290 (316)
Q Consensus 263 ------lD~~i~~~pmP~ey~~~~~~IlCn--DC~~ 290 (316)
+...++++.+| =|+.|. +|++
T Consensus 75 ~~~~~~~~~~~~~~~l~-------~~~~c~~~~c~~ 103 (776)
T 4gut_A 75 GKTEPSPKAFMADQQLP-------YWVQCTKPECRK 103 (776)
T ss_dssp CCSCCCHHHHHHHHTSC-------CEEECCCTTTCC
T ss_pred CccchhHHHHHHhccCc-------HhhhcCcccccc
Confidence 23345555554 378899 9997
No 112
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=33.15 E-value=36 Score=33.01 Aligned_cols=48 Identities=15% Similarity=0.441 Sum_probs=34.0
Q ss_pred CCCCcccccccccCcceeEEcCCCCc--ccHHhHHHHh-ccCCCCCCCCCcccc
Q 021215 204 HHDCPVCCEYLFETRQDVIVLPCGHT--IHKNCLKEMR-EHHQYACPICSKSVC 254 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~v~~LpCGH~--fH~~Ci~~wl-~~~~~~CPiCrks~~ 254 (316)
...|||=+..|.. +++...|.|. |=..=+.++. +.....||+|.+.+.
T Consensus 249 SL~CPlS~~ri~~---PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMKY---PSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCSS---EEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCccccccc---cCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 3579988875444 7888999997 5555555543 235678999999885
No 113
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=32.77 E-value=30 Score=25.63 Aligned_cols=48 Identities=19% Similarity=0.448 Sum_probs=28.9
Q ss_pred CCCCccccccccc-CcceeEEcCCCCcccHHhHHHHh----ccCCCCCCCCCccc
Q 021215 204 HHDCPVCCEYLFE-TRQDVIVLPCGHTIHKNCLKEMR----EHHQYACPICSKSV 253 (316)
Q Consensus 204 ~~~CPIClE~lf~-s~~~v~~LpCGH~fH~~Ci~~wl----~~~~~~CPiCrks~ 253 (316)
...| ||... ++ ...-+.--.|.-.||..|+.--. ....|.||.|+...
T Consensus 12 ~~~C-~C~~~-~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQP-YNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCS-CCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCc-cCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 4456 88763 22 11111222688999999996321 12468999999754
No 114
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=32.03 E-value=39 Score=32.66 Aligned_cols=48 Identities=23% Similarity=0.474 Sum_probs=34.4
Q ss_pred CCCCcccccccccCcceeEEcCCCCc--ccHHhHHHHhc-cCCCCCCCCCcccc
Q 021215 204 HHDCPVCCEYLFETRQDVIVLPCGHT--IHKNCLKEMRE-HHQYACPICSKSVC 254 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~v~~LpCGH~--fH~~Ci~~wl~-~~~~~CPiCrks~~ 254 (316)
...|||=+..|.. +++...|.|. |=..=+.++.. ....+||+|.+.+.
T Consensus 215 SL~CPlS~~ri~~---P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLTI---PCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCSS---EEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceecc---CCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 3469988876544 7888999988 55555555432 34678999999886
No 115
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=31.43 E-value=23 Score=22.97 Aligned_cols=15 Identities=33% Similarity=0.802 Sum_probs=11.9
Q ss_pred CCCCCCCCccccchh
Q 021215 243 QYACPICSKSVCDMS 257 (316)
Q Consensus 243 ~~~CPiCrks~~d~~ 257 (316)
.+.||+|.+.+...+
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 378999999988644
No 116
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.39 E-value=5.2 Score=28.02 Aligned_cols=46 Identities=24% Similarity=0.558 Sum_probs=28.8
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhcc---CCCCCCCCCc
Q 021215 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSK 251 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~---~~~~CPiCrk 251 (316)
..+..|.||.+. ..-+.--.|.-.||..|+.+-+.. +...||.|.+
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS----SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC----CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 346779999862 111112267899999999864432 3456887754
No 117
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=30.59 E-value=47 Score=25.73 Aligned_cols=32 Identities=28% Similarity=0.584 Sum_probs=23.1
Q ss_pred CCCCcccHHhHHHHhcc--CCCCCCCCCccccch
Q 021215 225 PCGHTIHKNCLKEMREH--HQYACPICSKSVCDM 256 (316)
Q Consensus 225 pCGH~fH~~Ci~~wl~~--~~~~CPiCrks~~d~ 256 (316)
.|.-.||..|+..=+.. ..+.||.|+..-.+.
T Consensus 47 ~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~~~~~ 80 (98)
T 2lv9_A 47 KCSVWQHIDCMGIDRQHIPDTYLCERCQPRNLDK 80 (98)
T ss_dssp TTCBEEETTTTTCCTTSCCSSBCCTTTSSSCCCH
T ss_pred CCCCcCcCcCCCCCccCCCCCEECCCCcCCCCCH
Confidence 68899999999763221 358999998655443
No 118
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=30.59 E-value=15 Score=31.23 Aligned_cols=46 Identities=17% Similarity=0.419 Sum_probs=30.3
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHhHHHHhcc---CCCCCCCCCccc
Q 021215 204 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSKSV 253 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~---~~~~CPiCrks~ 253 (316)
+..|.||.+. ++-+.-=.|.-.||..|+.+-+.. +...||.|+...
T Consensus 4 ~~~C~~C~~~----g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG----GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC----SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC----CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 5679999852 221111157889999999876542 346799999643
No 119
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=30.46 E-value=20 Score=26.10 Aligned_cols=24 Identities=21% Similarity=0.521 Sum_probs=15.8
Q ss_pred ceeecCCCCcc--cccccCCCCCCCc
Q 021215 118 NQVICSLCGTE--QKVQQVCVNCGVC 141 (316)
Q Consensus 118 ~~V~C~~C~~e--q~v~~~C~~Cg~~ 141 (316)
++.+|.+|... ++..-.||.|+..
T Consensus 10 ~~~~C~vC~~~~~~~akY~CPrC~~r 35 (59)
T 1x4s_A 10 PAGPCGFCPAGEVQPARYTCPRCNAP 35 (59)
T ss_dssp CCEEECSSCTTCCEEECEECTTTCCE
T ss_pred CCCcCcCCCCCcCCCccccCcCCCCC
Confidence 35688888763 4555677777754
No 120
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=30.44 E-value=16 Score=22.77 Aligned_cols=16 Identities=31% Similarity=0.831 Sum_probs=13.1
Q ss_pred CCCCCCCCccccchhH
Q 021215 243 QYACPICSKSVCDMSK 258 (316)
Q Consensus 243 ~~~CPiCrks~~d~~~ 258 (316)
.+.||+|+..+.|+..
T Consensus 3 k~~CpvCk~q~Pd~kt 18 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMDT 18 (28)
T ss_dssp CEECTTSSCEESSHHH
T ss_pred cccCccccccCcChHH
Confidence 4789999999988654
No 121
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=30.15 E-value=28 Score=26.13 Aligned_cols=25 Identities=20% Similarity=0.470 Sum_probs=18.7
Q ss_pred cCceeecCCCCcccccccCCCCCCCc
Q 021215 116 EVNQVICSLCGTEQKVQQVCVNCGVC 141 (316)
Q Consensus 116 ~v~~V~C~~C~~eq~v~~~C~~Cg~~ 141 (316)
...+..|..|...+ ..+.||+||..
T Consensus 8 ~~~~~AC~~C~~~~-~~~~CPnC~s~ 32 (69)
T 1ryq_A 8 GSSEKACRHCHYIT-SEDRCPVCGSR 32 (69)
T ss_dssp ---CEEETTTCBEE-SSSSCTTTCCC
T ss_pred CchhhhHHhCCccc-cCCcCCCccCC
Confidence 34688999999977 77899999843
No 122
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=29.33 E-value=42 Score=21.44 Aligned_cols=13 Identities=23% Similarity=0.524 Sum_probs=7.7
Q ss_pred CCCCCCCccccch
Q 021215 244 YACPICSKSVCDM 256 (316)
Q Consensus 244 ~~CPiCrks~~d~ 256 (316)
|.|++|.+.+...
T Consensus 2 ~~C~~C~~~f~~~ 14 (57)
T 1bbo_A 2 YICEECGIRXKKP 14 (57)
T ss_dssp CBCTTTCCBCSSH
T ss_pred CcCCCCcCcCCCH
Confidence 4566666666554
No 123
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=29.31 E-value=16 Score=27.07 Aligned_cols=50 Identities=20% Similarity=0.473 Sum_probs=30.8
Q ss_pred CCCCCCCcccccccccCcceeEEc--CCCCcccHHhHHHH-hccCCCCCCCCCc
Q 021215 201 GAMHHDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEM-REHHQYACPICSK 251 (316)
Q Consensus 201 ~~~~~~CPIClE~lf~s~~~v~~L--pCGH~fH~~Ci~~w-l~~~~~~CPiCrk 251 (316)
...+..|.||.+.-.... ..+++ .|.-.||..|+..- +-.+.-.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~-~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNS-NVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSS-SCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCC-CCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 355778999986311112 22333 68889999999753 2223466887753
No 124
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=29.15 E-value=52 Score=23.26 Aligned_cols=42 Identities=21% Similarity=0.523 Sum_probs=28.2
Q ss_pred CCCCCccccccccc---CcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 203 MHHDCPVCCEYLFE---TRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 203 ~~~~CPIClE~lf~---s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
....|+.|.+.+.. ....+.. =|..+|..| ++|-.|++++..
T Consensus 14 ~~~~C~~C~~~I~~~g~~~~~~~a--~~~~~H~~C---------F~C~~C~~~L~~ 58 (77)
T 2egq_A 14 VAKKCAGCKNPITGFGKGSSVVAY--EGQSWHDYC---------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCCCSSSCCCCCCCSSCCCEEEE--TTEEEETTT---------CBCSSSCCBCTT
T ss_pred hCccCcccCCcccCCCCCceeEEE--CcceeCccc---------CEehhcCCCCCC
Confidence 35679999987664 2233333 378888776 468889988763
No 125
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=28.17 E-value=35 Score=29.70 Aligned_cols=55 Identities=27% Similarity=0.621 Sum_probs=28.2
Q ss_pred ecCccc-cccCCC-CCCeeecCCCCcceecCCcceeeccCCcceeecccccccccc--CCCCCCCCccccc
Q 021215 146 FCESCK-LFDDDT-SKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCV--EGAMHHDCPVCCE 212 (316)
Q Consensus 146 fC~~Ck-l~ddd~-~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~Ci--E~~~~~~CPIClE 212 (316)
||++|+ .|+++. ....-.||.| +++||- .|..+.......=. .....-.||.|..
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C--------~~W~H~----~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~ 62 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKC--------DRWVHS----KCENLSDEMYEILSNLPESVAYTCVNCTE 62 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTT--------CCEEEG----GGSSCCHHHHHHHHHSHHHHCCCCTTTCC
T ss_pred cCCCCcCccCCcccCCCeEECCCC--------Ccccch----hccccCHHHHHHhhcCCCCCeeECcCCCC
Confidence 477774 555543 3456677777 667774 44444321000000 0012568898875
No 126
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=28.14 E-value=17 Score=22.56 Aligned_cols=30 Identities=27% Similarity=0.585 Sum_probs=17.1
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHhH
Q 021215 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCL 235 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci 235 (316)
+...||.|...++.- +.+. .=|..||..|+
T Consensus 2 m~~~C~~C~k~Vy~~-Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 2 MNPNCARCGKIVYPT-EKVN--CLDKFWHKACF 31 (31)
T ss_dssp CCCBCSSSCSBCCGG-GCCC--SSSSCCCGGGC
T ss_pred CCCcCCccCCEEecc-eeEE--ECCeEecccCC
Confidence 345677777655542 2222 33777777774
No 127
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=28.14 E-value=24 Score=25.59 Aligned_cols=19 Identities=21% Similarity=0.543 Sum_probs=14.8
Q ss_pred ecCCCCcccccccCCCCCCC
Q 021215 121 ICSLCGTEQKVQQVCVNCGV 140 (316)
Q Consensus 121 ~C~~C~~eq~v~~~C~~Cg~ 140 (316)
.|+.|+..++.. .|||||.
T Consensus 3 AC~~C~~v~~~~-~CpnC~~ 21 (59)
T 3lpe_B 3 ACLKCKYLTNDE-ICPICHS 21 (59)
T ss_dssp EETTTCBEESSS-BCTTTCC
T ss_pred ccccCCcccCCC-CCCCCCC
Confidence 588888887665 6999986
No 128
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.67 E-value=35 Score=24.17 Aligned_cols=43 Identities=19% Similarity=0.406 Sum_probs=28.1
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
.....|+.|.+.+.....-+.. =|..+|.+|+ +|-.|++++..
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF---------~C~~C~~~L~~ 51 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNS--NGELYHEQCF---------VCAQCFQQFPE 51 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEE--TTEEECTTTC---------CCTTTCCCCGG
T ss_pred CCCCCchhcCCccCCCceEEEe--CccEeccccC---------eECCCCCCCCC
Confidence 3457899999876543222223 3778887764 58888887764
No 129
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=27.64 E-value=5 Score=28.41 Aligned_cols=45 Identities=24% Similarity=0.567 Sum_probs=29.2
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhcc---CCCCCCCCCc
Q 021215 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSK 251 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~---~~~~CPiCrk 251 (316)
.+..|.||.+. +.-+.--.|.-.||..|+.+-+.. +...||.|..
T Consensus 4 ~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 4 HEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCSSCTTTCCC----SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCcCCCCC----CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 46779999862 211111268899999999864332 3467988864
No 130
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=27.59 E-value=21 Score=27.42 Aligned_cols=32 Identities=25% Similarity=0.545 Sum_probs=22.1
Q ss_pred ccCCCCCCCccceEecCccccccCCCCCCeeecCCCCcceecC
Q 021215 132 QQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGG 174 (316)
Q Consensus 132 ~~~C~~Cg~~f~~YfC~~Ckl~ddd~~k~~yHC~~CgiCR~G~ 174 (316)
.-.||+||... +| ++...+++|+.||-=-.||
T Consensus 27 ~y~Cp~CG~~~---------v~--r~atGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 27 DHACPNCGEDR---------VD--RQGTGIWQCSYCDYKFTGG 58 (83)
T ss_dssp CEECSSSCCEE---------EE--EEETTEEEETTTCCEEECC
T ss_pred cCcCCCCCCcc---------ee--ccCCCeEECCCCCCEecCC
Confidence 44677777632 22 3456799999999887876
No 131
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=27.36 E-value=27 Score=30.10 Aligned_cols=52 Identities=17% Similarity=0.501 Sum_probs=34.2
Q ss_pred cceeeccccccccccCCCCCCCCcccccccccCcceeEEc---CCCCcccHHhHHHHhcc
Q 021215 185 RCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVL---PCGHTIHKNCLKEMREH 241 (316)
Q Consensus 185 ~~C~s~~l~~~H~CiE~~~~~~CPIClE~lf~s~~~v~~L---pCGH~fH~~Ci~~wl~~ 241 (316)
..|...-+.....=.+...+..|.||.+ .+ .++.- .|...|+..||+.++..
T Consensus 60 ~~Ck~~y~e~~f~~DeDG~~~yC~wC~~----Gg-~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 60 QNCKNCFLECAYQYDDDGYQSYCTICCG----GR-EVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp HHHHHHHHHHTTCBCTTSSBSSCTTTSC----CS-EEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred HHHHHHHhhcccccCCCCCcceeeEecC----CC-eEEeeCCCCCCCchhHHHHHHhcCH
Confidence 3333333334445567888999999997 22 33322 47789999999998753
No 132
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.33 E-value=35 Score=23.88 Aligned_cols=40 Identities=20% Similarity=0.484 Sum_probs=25.5
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCcccc
Q 021215 204 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 254 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~ 254 (316)
...|+.|.+.+..... ++..=|..+|..|+ +|-.|++++.
T Consensus 5 ~~~C~~C~~~I~~~~~--~~~a~~~~~H~~CF---------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGA--GVVALDRVFHVGCF---------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSC--CEECSSSEECTTTC---------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCce--EEEECCCeEcccCC---------cccccCCcCC
Confidence 4578888876654222 22334778887764 5778888774
No 133
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=27.24 E-value=25 Score=24.49 Aligned_cols=14 Identities=36% Similarity=0.807 Sum_probs=8.9
Q ss_pred CCCCCCCccccchh
Q 021215 244 YACPICSKSVCDMS 257 (316)
Q Consensus 244 ~~CPiCrks~~d~~ 257 (316)
|.|++|.+.+....
T Consensus 5 y~C~~C~k~F~~~~ 18 (60)
T 4gzn_C 5 FFCNFCGKTYRDAS 18 (60)
T ss_dssp EECTTTCCEESSHH
T ss_pred ccCCCCCCEeCCHH
Confidence 56777777666543
No 134
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=27.13 E-value=31 Score=25.14 Aligned_cols=17 Identities=29% Similarity=0.724 Sum_probs=13.2
Q ss_pred CCCCCCCCCccccchhH
Q 021215 242 HQYACPICSKSVCDMSK 258 (316)
Q Consensus 242 ~~~~CPiCrks~~d~~~ 258 (316)
..|.|++|.+.+.....
T Consensus 44 ~~~~C~~C~~~f~~~~~ 60 (106)
T 2ee8_A 44 RPYTCDICHKAFRRQDH 60 (106)
T ss_dssp CCCBCSSSCCBCSCHHH
T ss_pred CCcCCCCccchhCCHHH
Confidence 35899999999887544
No 135
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=26.88 E-value=43 Score=31.49 Aligned_cols=24 Identities=29% Similarity=0.649 Sum_probs=20.9
Q ss_pred ceeecCCCCccccc-ccCCCCCCCc
Q 021215 118 NQVICSLCGTEQKV-QQVCVNCGVC 141 (316)
Q Consensus 118 ~~V~C~~C~~eq~v-~~~C~~Cg~~ 141 (316)
+-..|+.|+++=.. -..|++||..
T Consensus 207 R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 207 RYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp EEEEETTTCCEEECCTTSCSSSCCC
T ss_pred EEEEeCCCCCEEeecCcCCcCCCCC
Confidence 57999999999875 5789999987
No 136
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.64 E-value=46 Score=23.16 Aligned_cols=41 Identities=17% Similarity=0.519 Sum_probs=26.4
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 204 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
...|+.|.+.+...... +..=|..+|.+|+ +|-.|++++..
T Consensus 5 ~~~C~~C~~~I~~~~~~--~~a~~~~~H~~CF---------~C~~C~~~L~~ 45 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRK--MEYKGSSWHETCF---------ICHRCQQPIGT 45 (72)
T ss_dssp CCCBSSSCCCCCSSSCE--EEETTEEEETTTT---------CCSSSCCCCCS
T ss_pred CCCCccCCCcccCCceE--EEECcCeecccCC---------cccccCCccCC
Confidence 45788898876643222 2234778887664 58888887764
No 137
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.63 E-value=42 Score=24.09 Aligned_cols=42 Identities=24% Similarity=0.497 Sum_probs=27.0
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
....|+.|.+.+..... + +..=|..+|.+|+ +|-.|++++..
T Consensus 14 ~~~~C~~C~~~I~~~~~-~-~~a~~~~~H~~CF---------~C~~C~~~L~~ 55 (82)
T 1x63_A 14 DSPKCKGCFKAIVAGDQ-N-VEYKGTVWHKDCF---------TCSNCKQVIGT 55 (82)
T ss_dssp CSCBCSSSCCBCCSSSC-E-EECSSCEEETTTC---------CCSSSCCCCTT
T ss_pred cCCcCccCCcccccCce-E-EEECccccccccC---------chhhCCCccCC
Confidence 34678899887653222 2 2234788887764 57788887764
No 138
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=25.69 E-value=43 Score=17.58 Aligned_cols=15 Identities=33% Similarity=0.886 Sum_probs=11.7
Q ss_pred CCCCCCCccccchhH
Q 021215 244 YACPICSKSVCDMSK 258 (316)
Q Consensus 244 ~~CPiCrks~~d~~~ 258 (316)
|.|++|.+.+.....
T Consensus 2 ~~C~~C~k~f~~~~~ 16 (27)
T 1znf_A 2 YKCGLCERSFVEKSA 16 (27)
T ss_dssp CBCSSSCCBCSSHHH
T ss_pred ccCCCCCCcCCCHHH
Confidence 679999998876543
No 139
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.65 E-value=49 Score=23.53 Aligned_cols=69 Identities=19% Similarity=0.389 Sum_probs=42.6
Q ss_pred CCCCCccccccccc--CcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccchhHHHHHhHHHHHcCCCChhhhcCc
Q 021215 203 MHHDCPVCCEYLFE--TRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKK 280 (316)
Q Consensus 203 ~~~~CPIClE~lf~--s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d~~~~~~~lD~~i~~~pmP~ey~~~~ 280 (316)
....|+.|.+.+.. .... +..=|..+|.+|+ +|-.|++++.... |....
T Consensus 4 ~~~~C~~C~~~I~~~g~~~~--~~a~~~~wH~~CF---------~C~~C~~~L~~~~------------------f~~~~ 54 (76)
T 1x68_A 4 GSSGCVACSKPISGLTGAKF--ICFQDSQWHSECF---------NCGKCSVSLVGKG------------------FLTQN 54 (76)
T ss_dssp CCCCCTTTCCCCCTTTTCCE--EEETTEEEEGGGC---------BCTTTCCBCSSSC------------------EEEET
T ss_pred cCCCCccCCCcccCCCCcee--EEECCcccCcccC---------ChhhCCCcCCCCc------------------eEeEC
Confidence 34679999987664 2222 3334788898774 5889998876311 11123
Q ss_pred ceEEcCCCCCCccccceeeeecCCCC
Q 021215 281 VWILCNDCGKTSNVQFHVLAQKCPNC 306 (316)
Q Consensus 281 ~~IlCnDC~~~s~v~~H~lg~kC~~C 306 (316)
..++|.+|-.+- ++-+|..+
T Consensus 55 g~~yC~~cy~~~------f~~~C~~~ 74 (76)
T 1x68_A 55 KEIFCQKCGSGM------DTDISGPS 74 (76)
T ss_dssp TEEEETTTTCCC------CCCSSSSS
T ss_pred CEEECHHHhhhh------hCCcCCCC
Confidence 468999887653 34466544
No 140
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=25.09 E-value=58 Score=17.21 Aligned_cols=16 Identities=31% Similarity=0.671 Sum_probs=12.5
Q ss_pred CCCCCCCCccccchhH
Q 021215 243 QYACPICSKSVCDMSK 258 (316)
Q Consensus 243 ~~~CPiCrks~~d~~~ 258 (316)
.|.|++|.+.+...+.
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (30)
T 1klr_A 2 TYQCQYCEFRSADSSN 17 (30)
T ss_dssp CCCCSSSSCCCSCSHH
T ss_pred CccCCCCCCccCCHHH
Confidence 3789999999886544
No 141
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=24.94 E-value=44 Score=22.46 Aligned_cols=9 Identities=22% Similarity=0.660 Sum_probs=4.2
Q ss_pred CCCCCCCcc
Q 021215 134 VCVNCGVCM 142 (316)
Q Consensus 134 ~C~~Cg~~f 142 (316)
.|+.||..|
T Consensus 16 ~C~~C~k~F 24 (62)
T 1vd4_A 16 KCPVCSSTF 24 (62)
T ss_dssp ECSSSCCEE
T ss_pred cCCCCCchh
Confidence 344444444
No 142
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=24.74 E-value=14 Score=24.65 Aligned_cols=9 Identities=44% Similarity=0.752 Sum_probs=4.6
Q ss_pred CeeecCCCC
Q 021215 160 KQYHCDGCG 168 (316)
Q Consensus 160 ~~yHC~~Cg 168 (316)
.+|.|+.||
T Consensus 39 ~~~~C~~C~ 47 (66)
T 2drp_A 39 KVYPCPFCF 47 (66)
T ss_dssp CCEECTTTC
T ss_pred cCeECCCCC
Confidence 455555554
No 143
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=24.59 E-value=35 Score=25.32 Aligned_cols=73 Identities=21% Similarity=0.450 Sum_probs=38.7
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccchhHHHHHhHHHHHcCCCChhhhcCcce
Q 021215 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVW 282 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d~~~~~~~lD~~i~~~pmP~ey~~~~~~ 282 (316)
....|++|.. .|.+..... .|. ........+.||+|.+.+.......+ -+....+. .....
T Consensus 6 ~~~~C~~C~~-~f~~~~~l~-------~H~---~~h~~~~~~~C~~C~~~f~~~~~l~~----H~~~~~~~----~~~~~ 66 (124)
T 2dlq_A 6 SGVECPTCHK-KFLSKYYLK-------VHN---RKHTGEKPFECPKCGKCYFRKENLLE----HEARNCMN----RSEQV 66 (124)
T ss_dssp SSCCCTTTCC-CCSSHHHHH-------HHH---HHHSSCCSCBCTTTCCBCSSHHHHHH----HHHHCCCC----SCCCC
T ss_pred CCCCCCCCCC-cCCCHHHHH-------HHH---HhCCCCCCeECCCCCchhcCHHHHHH----HHhhhhcC----CCCCC
Confidence 4578999986 455432110 121 11111235899999999987544322 22211100 11234
Q ss_pred EEcCCCCCCccc
Q 021215 283 ILCNDCGKTSNV 294 (316)
Q Consensus 283 IlCnDC~~~s~v 294 (316)
..|..|++....
T Consensus 67 ~~C~~C~~~f~~ 78 (124)
T 2dlq_A 67 FTCSVCQETFRR 78 (124)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCCCccCC
Confidence 789999986543
No 144
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=24.26 E-value=33 Score=26.73 Aligned_cols=43 Identities=21% Similarity=0.580 Sum_probs=27.6
Q ss_pred CCCCCcccccccccCcceeEEcC-----CC-CcccHHhHHHHhcc---CCCCCCCCCccc
Q 021215 203 MHHDCPVCCEYLFETRQDVIVLP-----CG-HTIHKNCLKEMREH---HQYACPICSKSV 253 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~v~~Lp-----CG-H~fH~~Ci~~wl~~---~~~~CPiCrks~ 253 (316)
....| ||.+..+ + .++. |. ..||..|+. |.. ..+.||.|++..
T Consensus 35 e~~yC-iC~~~~~--g---~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY--G---EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC--S---CCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC--C---CEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 34567 8987422 2 1333 55 689999997 322 468899998654
No 145
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=23.94 E-value=34 Score=31.38 Aligned_cols=20 Identities=30% Similarity=0.977 Sum_probs=15.7
Q ss_pred ccCCCCCCCcc--------ceEecCccc
Q 021215 132 QQVCVNCGVCM--------GEYFCESCK 151 (316)
Q Consensus 132 ~~~C~~Cg~~f--------~~YfC~~Ck 151 (316)
++.|+.||..+ +.|||+.|.
T Consensus 245 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 245 GNPCKRCGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred cCCCCCCCCeEEEEEECCCCeEECCCCC
Confidence 36899999887 468888874
No 146
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=23.53 E-value=35 Score=31.18 Aligned_cols=20 Identities=35% Similarity=1.029 Sum_probs=16.2
Q ss_pred ccCCCCCCCcc--------ceEecCccc
Q 021215 132 QQVCVNCGVCM--------GEYFCESCK 151 (316)
Q Consensus 132 ~~~C~~Cg~~f--------~~YfC~~Ck 151 (316)
++.|+.||..+ +.|||+.|.
T Consensus 242 G~pC~~CG~~I~~~~~~gR~t~~CP~CQ 269 (271)
T 2xzf_A 242 GEKCSRCGAEIQKIKVAGRGTHFCPVCQ 269 (271)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTS
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCCC
Confidence 36799999888 678888885
No 147
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=23.44 E-value=15 Score=26.94 Aligned_cols=49 Identities=24% Similarity=0.479 Sum_probs=29.1
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhc--cCCCCCCCCCcc
Q 021215 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMRE--HHQYACPICSKS 252 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~--~~~~~CPiCrks 252 (316)
.....| ||... .....-+.--.|.-.||..|+..-.. ...|.||.|+++
T Consensus 17 ~~~~~C-iC~~~-~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~s 67 (68)
T 3o70_A 17 QGLVTC-FCMKP-FAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDS 67 (68)
T ss_dssp TTCCCS-TTCCC-CTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHTC
T ss_pred CCceEe-ECCCc-CCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCCC
Confidence 335567 88763 22111111226889999999975321 146889988753
No 148
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=23.27 E-value=39 Score=25.12 Aligned_cols=8 Identities=38% Similarity=1.145 Sum_probs=4.4
Q ss_pred eecCCCCc
Q 021215 162 YHCDGCGI 169 (316)
Q Consensus 162 yHC~~Cgi 169 (316)
-+|..||-
T Consensus 46 irCp~CG~ 53 (70)
T 1twf_L 46 VRCKDCGH 53 (70)
T ss_dssp TCCSSSCC
T ss_pred ccCCCCCc
Confidence 35666653
No 149
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=23.20 E-value=31 Score=26.79 Aligned_cols=47 Identities=19% Similarity=0.470 Sum_probs=30.9
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhcc---CCCCCCCCCcc
Q 021215 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSKS 252 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~---~~~~CPiCrks 252 (316)
..+..|.||.+. ++-+.--.|.-.||..|+.+=+.. +...||.|...
T Consensus 23 ~n~~~C~vC~~~----g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP----GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS----SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC----CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 446789999862 221111257788999999875532 34679999854
No 150
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=23.06 E-value=36 Score=30.91 Aligned_cols=20 Identities=30% Similarity=0.959 Sum_probs=15.8
Q ss_pred ccCCCCCCCcc--------ceEecCccc
Q 021215 132 QQVCVNCGVCM--------GEYFCESCK 151 (316)
Q Consensus 132 ~~~C~~Cg~~f--------~~YfC~~Ck 151 (316)
++.|+.||..+ +.|||+.|.
T Consensus 234 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 234 GEPCERCGSIIEKTTLSSRPFYWCPGCQ 261 (262)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred cCCCCCCCCEeEEEEECCCCeEECCCCC
Confidence 36799999887 678888885
No 151
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=23.04 E-value=32 Score=24.92 Aligned_cols=29 Identities=28% Similarity=0.677 Sum_probs=22.5
Q ss_pred ceEEcCCCCCCccccceeeeecCCCCCCcccccc
Q 021215 281 VWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLT 314 (316)
Q Consensus 281 ~~IlCnDC~~~s~v~~H~lg~kC~~C~SyNT~~~ 314 (316)
..+.|..|++. ...| +-|+.||.|+-+++
T Consensus 29 ~l~~c~~cGe~--~~~H---~vc~~CG~Y~gr~V 57 (60)
T 3v2d_5 29 TLVPCPECKAM--KPPH---TVCPECGYYAGRKV 57 (60)
T ss_dssp CCEECTTTCCE--ECTT---SCCTTTCEETTEEC
T ss_pred ceeECCCCCCe--ecce---EEcCCCCcCCCEEe
Confidence 46889999974 3445 45999999999875
No 152
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=22.87 E-value=37 Score=31.02 Aligned_cols=20 Identities=25% Similarity=0.989 Sum_probs=16.0
Q ss_pred ccCCCCCCCcc--------ceEecCccc
Q 021215 132 QQVCVNCGVCM--------GEYFCESCK 151 (316)
Q Consensus 132 ~~~C~~Cg~~f--------~~YfC~~Ck 151 (316)
++.|+.||... +.|||+.|.
T Consensus 240 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 240 GEPCRVCGTPIVATKHAQRATFYCRQCQ 267 (268)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCCC
Confidence 36799999888 678888884
No 153
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=22.70 E-value=31 Score=26.38 Aligned_cols=49 Identities=22% Similarity=0.557 Sum_probs=30.9
Q ss_pred CCCCCcccccccccCcceeEEc---CCCCcccHHhHHHH-hccCCCCCCCCCccc
Q 021215 203 MHHDCPVCCEYLFETRQDVIVL---PCGHTIHKNCLKEM-REHHQYACPICSKSV 253 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~v~~L---pCGH~fH~~Ci~~w-l~~~~~~CPiCrks~ 253 (316)
.+..|.||.+. .+...-.+| .|.-.||..|+..- +-.+...||.|....
T Consensus 24 ~~~~C~vC~~~--~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 24 EDAVCSICMDG--ESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCSSCCSS--SSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCcCCcCCCC--CCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 46789999963 211222233 67789999999863 222456788887543
No 154
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=22.65 E-value=37 Score=30.99 Aligned_cols=20 Identities=35% Similarity=0.939 Sum_probs=16.0
Q ss_pred ccCCCCCCCcc--------ceEecCccc
Q 021215 132 QQVCVNCGVCM--------GEYFCESCK 151 (316)
Q Consensus 132 ~~~C~~Cg~~f--------~~YfC~~Ck 151 (316)
++.|+.||... +.|||+.|.
T Consensus 235 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 262 (266)
T 1ee8_A 235 GLPCPACGRPVERRVVAGRGTHFCPTCQ 262 (266)
T ss_dssp TSBCTTTCCBCEEEESSSCEEEECTTTT
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCCC
Confidence 46799999887 678888885
No 155
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=22.62 E-value=53 Score=24.60 Aligned_cols=23 Identities=22% Similarity=0.696 Sum_probs=12.0
Q ss_pred CCcceecC-CcceeeccCCcceee
Q 021215 167 CGICRIGG-CDNFFHCNKCRCCYS 189 (316)
Q Consensus 167 CgiCR~G~-~~~ffHC~~C~~C~s 189 (316)
|-||+.++ .+....|+.|..-|-
T Consensus 29 C~vC~~~~d~~~ll~CD~C~~~yH 52 (77)
T 3shb_A 29 CHLCGGRQDPDKQLMCDECDMAFH 52 (77)
T ss_dssp BTTTCCCSCGGGEEECTTTCCEEE
T ss_pred CCccCCCCCCcceeEeCCCCCccC
Confidence 33444443 245666666665543
No 156
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.49 E-value=40 Score=23.51 Aligned_cols=41 Identities=22% Similarity=0.528 Sum_probs=27.3
Q ss_pred CCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 204 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
...|+.|.+.+.... .++..=|..+|.+|+ +|-.|++++..
T Consensus 5 ~~~C~~C~~~I~~~~--~~~~a~~~~~H~~CF---------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGS--RKLEYGGQTWHEHCF---------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSS--CEECSTTCCEETTTC---------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCc--cEEEECccccCcccC---------eECCCCCcCCC
Confidence 457888988765422 233445888888764 58888887754
No 157
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=22.33 E-value=53 Score=17.40 Aligned_cols=16 Identities=13% Similarity=0.758 Sum_probs=12.4
Q ss_pred CCCCCCCCccccchhH
Q 021215 243 QYACPICSKSVCDMSK 258 (316)
Q Consensus 243 ~~~CPiCrks~~d~~~ 258 (316)
.|.|++|.+.+.....
T Consensus 2 ~~~C~~C~~~f~~~~~ 17 (29)
T 1ard_A 2 SFVCEVCTRAFARQEH 17 (29)
T ss_dssp CCBCTTTCCBCSSHHH
T ss_pred CeECCCCCcccCCHHH
Confidence 3789999999886543
No 158
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=21.73 E-value=83 Score=20.20 Aligned_cols=14 Identities=14% Similarity=0.847 Sum_probs=9.4
Q ss_pred CCCCCCCccccchh
Q 021215 244 YACPICSKSVCDMS 257 (316)
Q Consensus 244 ~~CPiCrks~~d~~ 257 (316)
|.|++|.+.+....
T Consensus 3 ~~C~~C~~~f~~~~ 16 (60)
T 2adr_A 3 FVCEVCTRAFARQE 16 (60)
T ss_dssp BCCTTTCCCBSCHH
T ss_pred CcCCCCccccCCHH
Confidence 56777777776543
No 159
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=21.63 E-value=33 Score=30.18 Aligned_cols=22 Identities=36% Similarity=0.880 Sum_probs=16.0
Q ss_pred ccCCCCCCCc--c----ceEecCccccc
Q 021215 132 QQVCVNCGVC--M----GEYFCESCKLF 153 (316)
Q Consensus 132 ~~~C~~Cg~~--f----~~YfC~~Ckl~ 153 (316)
...||+||.. | .|++|++|.+.
T Consensus 113 ~~~Cp~Cg~g~fma~h~dR~~CGkC~~t 140 (189)
T 2xzm_9 113 QKGCPKCGPGIFMAKHYDRHYCGKCHLT 140 (189)
T ss_dssp SEECSTTCSSCEEEECSSCEEETTTCCC
T ss_pred cccCCccCCCccccCccCCCccCCceeE
Confidence 4689999954 2 77888888643
No 160
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=21.54 E-value=80 Score=21.39 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=23.9
Q ss_pred CCCCCCCCCccccchhHHHHHhHHHHHcCCCChhhhcCcceEEcCCCCCCcc
Q 021215 242 HQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSN 293 (316)
Q Consensus 242 ~~~~CPiCrks~~d~~~~~~~lD~~i~~~pmP~ey~~~~~~IlCnDC~~~s~ 293 (316)
..+.|++|.+.+.......+-+..-. + .....|..|+++..
T Consensus 28 ~~~~C~~C~~~f~~~~~l~~H~~~h~----------~-~~~~~C~~C~~~f~ 68 (82)
T 2kmk_A 28 RPYPCQYCGKRFHQKSDMKKHTFIHT----------G-EKPHKCQVCGKAFS 68 (82)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHHHH----------T-CCCEECTTTSCEES
T ss_pred CCeeCCcCChhhCCHHHHHHHHHHhc----------C-CCCCcCCCcchhhC
Confidence 35789999998876544333222111 1 12367888887543
No 161
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=21.34 E-value=58 Score=22.35 Aligned_cols=42 Identities=17% Similarity=0.479 Sum_probs=27.6
Q ss_pred CCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhccCCCCCCCCCccccc
Q 021215 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
....|+.|.+.+.... .++ ..=|..+|..|+ +|-.|++++..
T Consensus 10 ~~~~C~~C~~~i~~~e-~~~-~~~~~~~H~~CF---------~C~~C~~~L~~ 51 (72)
T 3f6q_B 10 ASATCERCKGGFAPAE-KIV-NSNGELYHEQCF---------VCAQCFQQFPE 51 (72)
T ss_dssp TTCBCTTTCCBCCTTC-EEE-EETTEEEETTTS---------SCTTTCCCCGG
T ss_pred CCccchhcCccccCCc-eEE-EeCcCeeCcCCC---------cccCCCCCCCC
Confidence 4567999988765432 222 234777887765 58888888765
No 162
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.32 E-value=57 Score=17.10 Aligned_cols=16 Identities=25% Similarity=0.694 Sum_probs=12.2
Q ss_pred CCCCCCCCccccchhH
Q 021215 243 QYACPICSKSVCDMSK 258 (316)
Q Consensus 243 ~~~CPiCrks~~d~~~ 258 (316)
.|.|+.|.+.+.....
T Consensus 2 ~~~C~~C~~~f~~~~~ 17 (29)
T 2m0e_A 2 EHKCPHCDKKFNQVGN 17 (29)
T ss_dssp CCCCSSCCCCCCTTTH
T ss_pred CCcCCCCCcccCCHHH
Confidence 3789999998876543
No 163
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=20.97 E-value=81 Score=21.39 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=8.8
Q ss_pred CCCCCCCCccccchh
Q 021215 243 QYACPICSKSVCDMS 257 (316)
Q Consensus 243 ~~~CPiCrks~~d~~ 257 (316)
.|.|++|.+.+....
T Consensus 17 ~~~C~~C~k~f~~~~ 31 (74)
T 2lce_A 17 PYKCDRCQASFRYKG 31 (74)
T ss_dssp SBCCTTSSCCBSCHH
T ss_pred CeECCCCCceeCCHH
Confidence 356666666665543
No 164
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=20.94 E-value=43 Score=22.97 Aligned_cols=28 Identities=32% Similarity=0.936 Sum_probs=15.9
Q ss_pred cceEecCcccc-ccC---CC-----CCCeeecCCCCc
Q 021215 142 MGEYFCESCKL-FDD---DT-----SKKQYHCDGCGI 169 (316)
Q Consensus 142 f~~YfC~~Ckl-~dd---d~-----~k~~yHC~~Cgi 169 (316)
|.+|-|.+|-+ ||. |+ --.-|.|+.||.
T Consensus 2 m~~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 2 MQKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGV 38 (46)
T ss_dssp CCCEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCC
T ss_pred CCEEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCC
Confidence 66788888865 442 21 112367777763
No 165
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=20.81 E-value=54 Score=23.09 Aligned_cols=25 Identities=20% Similarity=0.511 Sum_probs=11.0
Q ss_pred ceEecCccccccCCCCCCeeecCCC
Q 021215 143 GEYFCESCKLFDDDTSKKQYHCDGC 167 (316)
Q Consensus 143 ~~YfC~~Ckl~ddd~~k~~yHC~~C 167 (316)
+..+|.+|+.-+++....+.-||.|
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C 29 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKC 29 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSS
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCC
Confidence 3445555554333223344445444
No 166
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=20.53 E-value=15 Score=26.44 Aligned_cols=46 Identities=20% Similarity=0.489 Sum_probs=29.4
Q ss_pred CCCCCCcccccccccCcceeEEcCCCCcccHHhHHHHhcc---CCCCCCCCCc
Q 021215 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSK 251 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~---~~~~CPiCrk 251 (316)
..+..|.||.+. ++-+.--.|.-.||..|+.+-+.. +...||.|..
T Consensus 6 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG----GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC----SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC----CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 346789999862 211111267889999999864332 3466888864
No 167
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=20.49 E-value=76 Score=34.50 Aligned_cols=48 Identities=15% Similarity=0.204 Sum_probs=39.1
Q ss_pred CCCCCCcccccccccCcceeEEcCCC-CcccHHhHHHHhccCCCCCCCCCcccc
Q 021215 202 AMHHDCPVCCEYLFETRQDVIVLPCG-HTIHKNCLKEMREHHQYACPICSKSVC 254 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~v~~LpCG-H~fH~~Ci~~wl~~~~~~CPiCrks~~ 254 (316)
..+-.|||=++- .. +++++|=| ++|=+..|..|+.. ..+||+=|.++.
T Consensus 889 P~~F~cPIs~~l-M~---DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~ 937 (968)
T 3m62_A 889 PDEFLDPLMYTI-MK---DPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLK 937 (968)
T ss_dssp CGGGBCTTTCSB-CS---SEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCC
T ss_pred cHHhCCcchhhH-Hh---CCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCC
Confidence 345679999984 33 57889998 69999999999985 679999888775
No 168
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=20.34 E-value=43 Score=30.89 Aligned_cols=8 Identities=50% Similarity=1.186 Sum_probs=6.7
Q ss_pred cCCCCCCC
Q 021215 133 QVCVNCGV 140 (316)
Q Consensus 133 ~~C~~Cg~ 140 (316)
..||+||.
T Consensus 35 ~yCPnCG~ 42 (257)
T 4esj_A 35 SYCPNCGN 42 (257)
T ss_dssp CCCTTTCC
T ss_pred CcCCCCCC
Confidence 57999988
No 169
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=20.34 E-value=56 Score=21.53 Aligned_cols=11 Identities=36% Similarity=1.081 Sum_probs=6.3
Q ss_pred CCCeeecCCCC
Q 021215 158 SKKQYHCDGCG 168 (316)
Q Consensus 158 ~k~~yHC~~Cg 168 (316)
.|+-|.|.+||
T Consensus 25 ~~qg~~C~~C~ 35 (50)
T 1ptq_A 25 VKQGLKCEDCG 35 (50)
T ss_dssp SSCEEEETTTC
T ss_pred CCccCEeCCCC
Confidence 35556666655
No 170
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=20.15 E-value=54 Score=18.81 Aligned_cols=16 Identities=25% Similarity=0.760 Sum_probs=12.8
Q ss_pred CCCCCCCCccccchhH
Q 021215 243 QYACPICSKSVCDMSK 258 (316)
Q Consensus 243 ~~~CPiCrks~~d~~~ 258 (316)
.|.||+|.+.+.....
T Consensus 11 ~~~C~~C~k~f~~~~~ 26 (37)
T 1p7a_A 11 PFQCPDCDRSFSRSDH 26 (37)
T ss_dssp SBCCTTTCCCBSSHHH
T ss_pred CccCCCCCcccCcHHH
Confidence 4889999999987543
No 171
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.06 E-value=52 Score=22.14 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=19.4
Q ss_pred CCCCCCCCccccchhHHHHHhHHHHHcCCCC
Q 021215 243 QYACPICSKSVCDMSKVWEKYDREIAATPMP 273 (316)
Q Consensus 243 ~~~CPiCrks~~d~~~~~~~lD~~i~~~pmP 273 (316)
.|.|++|.+.+.....+.+-+..--...|-|
T Consensus 37 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~p 67 (70)
T 1x5w_A 37 PFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP 67 (70)
T ss_dssp SEECSSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred CEeCCCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence 4789999999987655444444333344443
Done!