BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021217
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A6Q|E Chain E, Crystal Structure Of Yefm-Yoeb Complex
pdb|2A6Q|F Chain F, Crystal Structure Of Yefm-Yoeb Complex
pdb|2A6R|A Chain A, Crystal Structure Of Yoeb Under Peg Condition
pdb|2A6R|B Chain B, Crystal Structure Of Yoeb Under Peg Condition
pdb|2A6R|C Chain C, Crystal Structure Of Yoeb Under Peg Condition
pdb|2A6R|D Chain D, Crystal Structure Of Yoeb Under Peg Condition
pdb|2A6R|E Chain E, Crystal Structure Of Yoeb Under Peg Condition
pdb|2A6R|F Chain F, Crystal Structure Of Yoeb Under Peg Condition
pdb|2A6S|A Chain A, Crystal Structure Of Yoeb Under Isopropanol Condition
pdb|2A6S|B Chain B, Crystal Structure Of Yoeb Under Isopropanol Condition
pdb|2A6S|C Chain C, Crystal Structure Of Yoeb Under Isopropanol Condition
pdb|2A6S|D Chain D, Crystal Structure Of Yoeb Under Isopropanol Condition
Length = 84
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 151 WAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERK 207
W YL WQ R ++ INEL K + TP G P + +++TEE +
Sbjct: 10 WDDYLYWQETDKRIVKK-INELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHR 65
>pdb|3V3V|A Chain A, Structural And Functional Analysis Of Quercetagetin, A
Natural Jnk1 Inhibitor
Length = 379
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 217 RHYNAGSILLGFGVLE-----SVGGGVNTYLRAGKLFPG 250
R+Y A ++LG G E SVG + ++ G LFPG
Sbjct: 189 RYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPG 227
>pdb|3VUD|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map
Kinase Jnk1
Length = 370
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 217 RHYNAGSILLGFGVLE-----SVGGGVNTYLRAGKLFPG 250
R+Y A ++LG G E SVG + ++ G LFPG
Sbjct: 189 RYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPG 227
>pdb|1UKH|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By
The Scaffolding Protein Jip1 And Sp600125
pdb|1UKI|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By
The Scaffolding Protein Jip1 And Sp600125
Length = 369
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 217 RHYNAGSILLGFGVLE-----SVGGGVNTYLRAGKLFPG 250
R+Y A ++LG G E SVG + ++ G LFPG
Sbjct: 189 RYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPG 227
>pdb|3VUG|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map
Kinase Jnk1
Length = 370
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 217 RHYNAGSILLGFGVLE-----SVGGGVNTYLRAGKLFPG 250
R+Y A ++LG G E SVG + ++ G LFPG
Sbjct: 189 RYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPG 227
>pdb|2XS0|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin
Antagonistically Control The Nuclear Shuttling Of Nfat4
Length = 386
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 217 RHYNAGSILLGFGVLE-----SVGGGVNTYLRAGKLFPG 250
R+Y A ++LG G E SVG + ++ G LFPG
Sbjct: 191 RYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPG 229
>pdb|2XRW|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin
Antagonistically Control The Nuclear Shuttling Of Nfat4
Length = 371
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 217 RHYNAGSILLGFGVLE-----SVGGGVNTYLRAGKLFPG 250
R+Y A ++LG G E SVG + ++ G LFPG
Sbjct: 190 RYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPG 228
>pdb|3VUH|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M3 In Map
Kinase Jnk1
Length = 370
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 217 RHYNAGSILLGFGVLE-----SVGGGVNTYLRAGKLFPG 250
R+Y A ++LG G E SVG + ++ G LFPG
Sbjct: 189 RYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPG 227
>pdb|3VUI|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map
Kinase Jnk1
Length = 370
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 217 RHYNAGSILLGFGVLE-----SVGGGVNTYLRAGKLFPG 250
R+Y A ++LG G E SVG + ++ G LFPG
Sbjct: 189 RYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPG 227
>pdb|3VUK|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M5 In Map
Kinase Jnk1
Length = 370
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 217 RHYNAGSILLGFGVLE-----SVGGGVNTYLRAGKLFPG 250
R+Y A ++LG G E SVG + ++ G LFPG
Sbjct: 189 RYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPG 227
>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map
Kinase Jnk1
Length = 370
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 217 RHYNAGSILLGFGVLE-----SVGGGVNTYLRAGKLFPG 250
R+Y A ++LG G E SVG + ++ G LFPG
Sbjct: 189 RYYRAPEVILGMGYKENVDIWSVGVIMGEMIKGGVLFPG 227
>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map
Kinase Jnk1
Length = 370
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 217 RHYNAGSILLGFGVLE-----SVGGGVNTYLRAGKLFPG 250
R+Y A ++LG G E SVG + ++ G LFPG
Sbjct: 189 RYYRAPEVILGMGYKENVDIWSVGVIMGEMIKGGVLFPG 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,509,614
Number of Sequences: 62578
Number of extensions: 266171
Number of successful extensions: 614
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 614
Number of HSP's gapped (non-prelim): 12
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)