BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021217
         (316 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q2UG94|MED5_ASPOR Mediator of RNA polymerase II transcription subunit 5
           OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
           GN=NUT1 PE=3 SV=2
          Length = 1013

 Score = 35.4 bits (80), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 9/108 (8%)

Query: 125 EFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPD 184
           EF  L+G    L+ P ++ SL+V   W G   W+     TI   +  L+  V P+ ++ D
Sbjct: 644 EFDTLKGGFEYLLEPFLLPSLVVALTWLGNHIWETESDPTIP--LKTLQSLVNPSSISGD 701

Query: 185 GAPAETAPSPVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLE 232
               E   + + I  + L E+ K++     R RH N   I     VLE
Sbjct: 702 A--REIHKTVLNITARSLDEQLKDI-----RSRHPNRADIKPILDVLE 742


>sp|Q74ZH9|GDE1_ASHGO Glycerophosphodiester phosphodiesterase GDE1 OS=Ashbya gossypii
           (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
           Y-1056) GN=GDE1 PE=3 SV=2
          Length = 1321

 Score = 32.7 bits (73), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 37/180 (20%)

Query: 67  SGSKLSTSTQLNCIRKDSNNQQTLVNETLVRFKSAVLPVTTITLPFLLDTKDALA----- 121
           S S +  ++QL  + KD  +   L+NE +  ++S VL + T TL  LL+ K AL+     
Sbjct: 259 SSSPIDVASQL--VTKD--DGAGLINELISMYRSVVL-IPTRTLVTLLN-KSALSRSFSC 312

Query: 122 VNGEFGIL---------EGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINEL 172
           V+   GI+          GR+    H I +G     +L       +   + ++ +D  +L
Sbjct: 313 VDEILGIIPTLGDPSDINGRNFFHHHVIALGKKRTKSLE------ERDNINSLLSDSLDL 366

Query: 173 KKQVKPTPVT-------PDGAPAETAPSPVEIKIQQLTEE-RKELLKGSYRDR---HYNA 221
           +  + P P T       PDG  ++ +P+P+   +QQL    R  LL+     R   HY+A
Sbjct: 367 EAAIPPEPNTRLVGAFGPDGVNSDDSPAPLSHILQQLPAHLRPSLLQRDNYKRTPLHYSA 426


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.134    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,831,391
Number of Sequences: 539616
Number of extensions: 4605358
Number of successful extensions: 14133
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 14133
Number of HSP's gapped (non-prelim): 5
length of query: 316
length of database: 191,569,459
effective HSP length: 117
effective length of query: 199
effective length of database: 128,434,387
effective search space: 25558443013
effective search space used: 25558443013
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)