Query 021217
Match_columns 316
No_of_seqs 135 out of 161
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 08:31:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021217.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021217hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13301 DUF4079: Protein of u 100.0 2.3E-44 5E-49 316.7 14.8 172 134-309 2-175 (175)
2 PF03188 Cytochrom_B561: Eukar 98.4 3.5E-06 7.5E-11 68.9 11.7 91 213-303 33-130 (137)
3 smart00665 B561 Cytochrome b-5 98.3 1.2E-05 2.6E-10 66.2 11.8 90 214-303 33-129 (129)
4 cd08761 Cyt_b561_CYB561D2_like 98.2 2.6E-05 5.5E-10 68.0 11.6 92 214-305 57-157 (183)
5 cd08554 Cyt_b561 Eukaryotic cy 98.1 8.4E-05 1.8E-09 61.1 11.7 89 214-302 35-130 (131)
6 cd08760 Cyt_b561_FRRS1_like Eu 97.7 0.00063 1.4E-08 59.4 11.5 131 130-308 31-165 (191)
7 cd08763 Cyt_b561_CYB561 Verteb 97.6 0.00098 2.1E-08 57.9 12.0 89 215-303 41-136 (143)
8 cd08766 Cyt_b561_ACYB-1_like P 97.6 0.0012 2.5E-08 57.5 12.3 89 215-303 41-136 (144)
9 cd08764 Cyt_b561_CG1275_like N 97.5 0.0022 4.8E-08 59.2 12.3 90 214-303 57-155 (214)
10 cd08765 Cyt_b561_CYBRD1 Verteb 97.4 0.0028 6E-08 56.0 11.9 89 215-303 48-143 (153)
11 KOG1619 Cytochrome b [Energy p 97.2 0.0033 7.3E-08 59.5 10.4 99 215-313 89-194 (245)
12 cd08762 Cyt_b561_CYBASC3 Verte 97.0 0.013 2.9E-07 53.1 11.9 88 216-303 72-166 (179)
13 PLN02680 carbon-monoxide oxyge 96.7 0.022 4.8E-07 53.5 11.7 91 216-308 81-178 (232)
14 PLN02810 carbon-monoxide oxyge 96.7 0.04 8.6E-07 52.0 12.8 89 215-303 80-175 (231)
15 PLN02351 cytochromes b561 fami 96.0 0.11 2.3E-06 49.4 11.9 85 215-303 84-178 (242)
16 PF01292 Ni_hydr_CYTB: Prokary 91.8 1.5 3.3E-05 36.8 9.0 90 213-306 5-123 (182)
17 PF00033 Cytochrom_B_N: Cytoch 91.5 1.4 3.1E-05 36.7 8.4 90 213-302 45-171 (188)
18 cd08760 Cyt_b561_FRRS1_like Eu 90.2 3.5 7.5E-05 36.1 10.0 102 129-277 63-166 (191)
19 PF03188 Cytochrom_B561: Eukar 89.9 1.3 2.8E-05 36.2 6.6 96 130-271 30-130 (137)
20 smart00665 B561 Cytochrome b-5 88.4 1.5 3.3E-05 36.1 6.1 83 222-304 3-91 (129)
21 cd08554 Cyt_b561 Eukaryotic cy 86.1 3.6 7.8E-05 33.8 7.1 82 224-305 8-94 (131)
22 PF13172 PepSY_TM_1: PepSY-ass 85.7 1.4 3.1E-05 29.5 3.7 30 277-306 2-31 (34)
23 cd08761 Cyt_b561_CYB561D2_like 85.6 4.6 0.0001 35.3 7.9 61 213-273 90-157 (183)
24 PF00033 Cytochrom_B_N: Cytoch 82.6 5.9 0.00013 33.0 7.0 93 213-305 7-127 (188)
25 PF14362 DUF4407: Domain of un 78.8 14 0.0003 34.6 8.8 33 214-246 11-43 (301)
26 PF13706 PepSY_TM_3: PepSY-ass 73.7 8 0.00017 26.6 4.3 30 277-306 1-30 (37)
27 PF02628 COX15-CtaA: Cytochrom 73.5 21 0.00045 33.5 8.4 84 222-305 103-189 (302)
28 PF09990 DUF2231: Predicted me 71.3 25 0.00055 28.1 7.4 60 250-309 41-101 (104)
29 cd08763 Cyt_b561_CYB561 Verteb 70.2 12 0.00026 32.8 5.7 58 213-270 73-135 (143)
30 PF02322 Cyto_ox_2: Cytochrome 68.1 36 0.00078 33.1 9.0 65 101-166 116-185 (328)
31 TIGR02796 tolQ TolQ protein. T 64.1 22 0.00048 32.5 6.4 50 222-271 129-180 (215)
32 cd08766 Cyt_b561_ACYB-1_like P 63.2 20 0.00044 31.4 5.7 58 213-270 73-135 (144)
33 PRK06743 flagellar motor prote 62.5 35 0.00076 32.6 7.6 42 220-265 145-186 (254)
34 PRK08456 flagellar motor prote 62.0 13 0.00029 34.9 4.7 28 219-246 147-174 (257)
35 PF10067 DUF2306: Predicted me 58.9 43 0.00093 27.2 6.6 44 213-256 4-50 (103)
36 PF13301 DUF4079: Protein of u 56.9 30 0.00065 31.4 5.9 58 213-273 112-171 (175)
37 COG1612 CtaA Uncharacterized p 56.4 1E+02 0.0022 30.6 9.7 82 223-305 114-199 (323)
38 COG4117 Thiosulfate reductase 53.8 1.2E+02 0.0026 29.1 9.4 30 273-302 173-202 (221)
39 cd08764 Cyt_b561_CG1275_like N 52.5 74 0.0016 29.8 7.8 92 213-304 92-193 (214)
40 PLN02680 carbon-monoxide oxyge 52.2 38 0.00083 32.2 6.0 88 213-301 112-212 (232)
41 COG4648 Predicted membrane pro 50.8 52 0.0011 30.9 6.4 47 263-309 72-118 (201)
42 COG3658 Cytochrome b [Energy p 50.4 42 0.00092 31.3 5.8 78 144-246 41-121 (192)
43 PF08285 DPM3: Dolichol-phosph 50.4 23 0.00049 29.1 3.7 35 142-176 42-77 (91)
44 PRK15028 cytochrome bd-II oxid 49.9 1.6E+02 0.0035 29.8 10.2 126 126-296 75-216 (378)
45 TIGR02125 CytB-hydogenase Ni/F 49.8 1.2E+02 0.0027 26.3 8.4 51 213-265 6-65 (211)
46 PF13703 PepSY_TM_2: PepSY-ass 49.8 90 0.0019 24.4 6.8 26 280-305 60-85 (88)
47 PF01794 Ferric_reduct: Ferric 49.7 53 0.0012 25.6 5.6 80 214-293 33-123 (125)
48 PF11377 DUF3180: Protein of u 48.9 47 0.001 28.8 5.6 27 137-163 29-55 (138)
49 cd00284 Cytochrome_b_N Cytochr 48.7 54 0.0012 30.0 6.2 86 219-305 23-127 (200)
50 PF02322 Cyto_ox_2: Cytochrome 48.5 2.1E+02 0.0046 27.9 10.5 129 126-299 70-210 (328)
51 PF14015 DUF4231: Protein of u 47.9 95 0.0021 24.5 6.8 49 213-265 13-61 (112)
52 PRK10520 rhtB homoserine/homos 47.7 1.9E+02 0.0041 25.4 9.3 26 137-162 67-93 (205)
53 KOG1563 Mitochondrial protein 47.0 8.8 0.00019 37.7 0.9 41 140-180 58-99 (288)
54 PRK10639 formate dehydrogenase 45.3 1.3E+02 0.0028 27.2 8.0 25 278-302 147-171 (211)
55 PRK13685 hypothetical protein; 45.3 48 0.001 31.6 5.5 18 134-151 4-21 (326)
56 CHL00070 petB cytochrome b6 45.3 34 0.00074 32.0 4.4 84 219-303 34-136 (215)
57 PRK03735 cytochrome b6; Provis 44.9 28 0.0006 32.7 3.8 84 219-303 42-144 (223)
58 TIGR02805 exbB2 tonB-system en 44.9 89 0.0019 27.8 6.7 51 220-270 60-111 (138)
59 PRK11513 cytochrome b561; Prov 44.5 1.6E+02 0.0035 26.0 8.4 87 214-306 9-105 (176)
60 PRK01622 OxaA-like protein pre 44.5 1.4E+02 0.0031 28.1 8.5 17 289-305 215-231 (256)
61 PRK08990 flagellar motor prote 43.1 98 0.0021 29.4 7.2 75 220-298 145-226 (254)
62 PF13172 PepSY_TM_1: PepSY-ass 43.0 33 0.00072 22.9 3.0 27 213-239 4-30 (34)
63 PRK09609 hypothetical protein; 42.9 24 0.00053 35.0 3.2 98 110-211 50-159 (312)
64 PF02665 Nitrate_red_gam: Nitr 42.6 2.6E+02 0.0057 25.7 9.7 41 261-303 99-139 (222)
65 PF01040 UbiA: UbiA prenyltran 42.2 68 0.0015 28.1 5.7 37 265-302 106-142 (257)
66 TIGR02125 CytB-hydogenase Ni/F 41.2 2E+02 0.0044 25.0 8.4 27 277-303 162-188 (211)
67 PF01578 Cytochrom_C_asm: Cyto 40.8 2.4E+02 0.0051 24.9 8.9 85 216-307 126-210 (214)
68 cd08765 Cyt_b561_CYBRD1 Verteb 40.6 61 0.0013 28.9 5.1 58 213-270 80-142 (153)
69 PF13703 PepSY_TM_2: PepSY-ass 40.4 79 0.0017 24.7 5.2 27 214-240 60-86 (88)
70 COG1290 QcrB Cytochrome b subu 38.8 1.1E+02 0.0024 31.0 7.2 84 219-303 39-141 (381)
71 PF14358 DUF4405: Domain of un 38.6 78 0.0017 23.4 4.7 24 277-300 38-61 (64)
72 PF00032 Cytochrom_B_C: Cytoch 36.1 1.3E+02 0.0028 24.2 6.0 53 252-304 29-84 (102)
73 TIGR01583 formate-DH-gamm form 36.0 2.1E+02 0.0045 25.6 7.8 26 278-303 145-170 (204)
74 PF10348 DUF2427: Domain of un 34.0 1.9E+02 0.0041 24.0 6.7 54 250-303 45-100 (105)
75 PF01618 MotA_ExbB: MotA/TolQ/ 33.7 1.7E+02 0.0037 24.6 6.6 29 219-247 59-87 (139)
76 PRK06926 flagellar motor prote 33.4 65 0.0014 31.1 4.4 47 195-246 133-179 (271)
77 PTZ00127 cytochrome c oxidase 33.4 1.2E+02 0.0026 30.5 6.5 86 229-316 187-290 (403)
78 PRK10171 hydrogenase 1 b-type 32.3 4E+02 0.0087 24.5 11.6 25 278-302 178-202 (235)
79 PRK09877 2,3-diketo-L-gulonate 32.2 3.2E+02 0.007 23.4 8.7 90 223-313 10-110 (157)
80 PF11026 DUF2721: Protein of u 32.2 3.2E+02 0.0069 23.2 8.1 29 139-167 5-35 (130)
81 PF07584 BatA: Aerotolerance r 32.0 2.3E+02 0.005 21.6 6.6 23 134-156 2-25 (77)
82 cd02862 NorE_like NorE_like su 31.9 1.2E+02 0.0027 26.6 5.6 57 216-272 6-70 (186)
83 TIGR00949 2A76 The Resistance 31.8 2.7E+02 0.0058 23.8 7.5 26 137-162 49-75 (185)
84 COG1280 RhtB Putative threonin 31.7 3.9E+02 0.0084 24.1 10.1 20 144-163 75-94 (208)
85 PF09946 DUF2178: Predicted me 31.5 2.8E+02 0.006 23.3 7.4 22 203-224 53-74 (111)
86 PRK15003 cytochrome d ubiquino 31.1 3.1E+02 0.0067 27.9 8.9 64 101-165 121-193 (379)
87 PF04156 IncA: IncA protein; 31.1 52 0.0011 28.6 3.1 56 217-273 3-61 (191)
88 PRK10599 calcium/sodium:proton 30.9 3.7E+02 0.0081 27.2 9.4 69 222-291 225-296 (366)
89 PLN02810 carbon-monoxide oxyge 30.6 1.9E+02 0.004 27.9 6.9 86 213-298 112-208 (231)
90 cd08762 Cyt_b561_CYBASC3 Verte 30.3 2.5E+02 0.0054 25.9 7.4 58 213-270 103-165 (179)
91 PRK09109 motC flagellar motor 30.1 1.7E+02 0.0036 27.6 6.5 40 220-263 148-187 (246)
92 PRK12482 flagellar motor prote 29.9 1.4E+02 0.0031 29.1 6.2 47 195-246 147-193 (287)
93 PF04123 DUF373: Domain of unk 29.2 5.4E+02 0.012 25.9 10.1 34 267-300 281-314 (344)
94 PRK15006 thiosulfate reductase 29.1 5E+02 0.011 24.6 11.4 27 277-303 216-242 (261)
95 PF06305 DUF1049: Protein of u 29.1 26 0.00056 25.7 0.8 14 144-157 26-39 (68)
96 PF03904 DUF334: Domain of unk 29.0 2.7E+02 0.0059 26.9 7.6 51 219-273 152-212 (230)
97 COG1291 MotA Flagellar motor c 28.9 1.2E+02 0.0026 29.6 5.4 103 194-301 128-233 (266)
98 PRK15003 cytochrome d ubiquino 28.6 4.7E+02 0.01 26.7 9.7 73 213-285 117-205 (379)
99 COG3295 Uncharacterized protei 28.1 47 0.001 31.6 2.5 33 271-303 16-48 (213)
100 TIGR00351 narI respiratory nit 27.9 1.8E+02 0.0039 27.1 6.3 28 278-305 115-142 (224)
101 cd00290 cytochrome_b_C Cytochr 27.1 81 0.0018 27.3 3.6 54 254-307 82-137 (147)
102 COG1422 Predicted membrane pro 27.1 3E+02 0.0064 26.1 7.4 130 133-273 40-195 (201)
103 PRK00888 ftsB cell division pr 27.1 43 0.00093 27.8 1.8 33 144-176 10-43 (105)
104 PF01595 DUF21: Domain of unkn 26.4 3.9E+02 0.0084 22.4 7.6 33 210-242 45-77 (183)
105 PRK00293 dipZ thiol:disulfide 26.4 1.8E+02 0.0039 30.4 6.6 56 242-297 319-377 (571)
106 PF03929 PepSY_TM: PepSY-assoc 26.2 74 0.0016 21.0 2.5 24 214-237 1-24 (27)
107 PF13346 ABC2_membrane_5: ABC- 26.1 3.9E+02 0.0085 22.4 8.3 80 205-290 74-156 (206)
108 PF04018 DUF368: Domain of unk 26.0 2.7E+02 0.0059 26.8 7.2 40 257-296 88-127 (257)
109 COG5395 Predicted membrane pro 26.0 2.4E+02 0.0053 25.0 6.2 53 216-268 38-90 (131)
110 PRK08124 flagellar motor prote 25.6 4.1E+02 0.0088 25.3 8.2 27 220-246 149-175 (263)
111 PF08566 Pam17: Mitochondrial 25.4 2.2E+02 0.0048 26.4 6.2 35 249-285 74-108 (173)
112 PF13748 ABC_membrane_3: ABC t 25.3 4E+02 0.0087 25.7 8.1 142 108-288 27-170 (237)
113 PRK10720 uracil transporter; P 24.5 7.4E+02 0.016 25.0 11.4 21 123-143 61-81 (428)
114 PF10112 Halogen_Hydrol: 5-bro 24.4 1.7E+02 0.0037 26.0 5.2 27 137-163 30-57 (199)
115 PF05425 CopD: Copper resistan 24.0 3.6E+02 0.0077 21.5 6.6 30 223-252 9-40 (105)
116 PRK12652 putative monovalent c 23.4 5.1E+02 0.011 25.9 8.8 59 248-311 187-251 (357)
117 PTZ00127 cytochrome c oxidase 23.4 1.5E+02 0.0033 29.8 5.2 43 222-264 353-395 (403)
118 COG1612 CtaA Uncharacterized p 23.3 1.7E+02 0.0036 29.0 5.4 30 131-162 226-255 (323)
119 PF04654 DUF599: Protein of un 23.3 1.5E+02 0.0033 27.3 4.8 31 214-244 54-84 (216)
120 PF01810 LysE: LysE type trans 23.3 4.7E+02 0.01 22.3 9.8 25 138-162 55-80 (191)
121 KOG1619 Cytochrome b [Energy p 23.2 5.1E+02 0.011 25.3 8.4 84 213-297 121-216 (245)
122 PRK09110 flagellar motor prote 23.1 3.3E+02 0.007 26.5 7.2 46 195-245 147-192 (283)
123 COG3374 Predicted membrane pro 23.0 4.1E+02 0.0089 25.2 7.5 95 216-316 97-194 (197)
124 PF14358 DUF4405: Domain of un 23.0 69 0.0015 23.6 2.1 41 225-265 9-58 (64)
125 PF01292 Ni_hydr_CYTB: Prokary 22.5 4.6E+02 0.01 21.9 8.8 88 214-302 42-165 (182)
126 PLN02351 cytochromes b561 fami 22.4 2.7E+02 0.0058 27.0 6.4 57 249-305 84-141 (242)
127 PF06365 CD34_antigen: CD34/Po 22.3 64 0.0014 30.2 2.2 33 136-168 102-136 (202)
128 PF05656 DUF805: Protein of un 22.2 2.5E+02 0.0054 22.4 5.4 19 211-229 6-24 (120)
129 PF10883 DUF2681: Protein of u 22.1 1.5E+02 0.0033 24.5 4.1 57 140-218 6-62 (87)
130 PF11190 DUF2976: Protein of u 22.0 2.3E+02 0.0049 23.5 5.1 63 208-270 17-81 (87)
131 COG3182 PiuB Uncharacterized i 21.8 1.9E+02 0.0041 29.9 5.6 76 213-306 126-211 (442)
132 PRK10801 colicin uptake protei 21.7 2.6E+02 0.0055 26.1 6.0 52 220-271 129-181 (227)
133 PF05106 Phage_holin_3: Phage 21.7 3.3E+02 0.0072 22.5 6.0 41 260-300 24-64 (100)
134 TIGR00203 cydB cytochrome d ox 21.7 8.6E+02 0.019 24.7 10.5 63 101-164 121-192 (378)
135 COG3090 DctM TRAP-type C4-dica 21.4 5.8E+02 0.013 22.7 9.7 37 277-313 85-121 (177)
136 PF04977 DivIC: Septum formati 21.4 25 0.00055 26.0 -0.5 38 156-209 13-50 (80)
137 PF06197 DUF998: Protein of un 21.3 2E+02 0.0042 24.3 4.8 22 250-271 103-124 (184)
138 PF08946 Osmo_CC: Osmosensory 21.3 95 0.0021 23.3 2.5 22 195-221 24-45 (46)
139 TIGR03818 MotA1 flagellar moto 21.0 2.2E+02 0.0047 27.6 5.5 46 195-245 147-192 (282)
140 PF06197 DUF998: Protein of un 20.7 5.1E+02 0.011 21.7 8.2 21 220-240 43-63 (184)
141 TIGR02056 ChlG chlorophyll syn 20.6 1.5E+02 0.0032 28.4 4.3 13 211-223 93-105 (306)
142 PF06472 ABC_membrane_2: ABC t 20.4 1.5E+02 0.0033 27.6 4.3 31 73-103 114-144 (281)
No 1
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=100.00 E-value=2.3e-44 Score=316.66 Aligned_cols=172 Identities=45% Similarity=0.657 Sum_probs=155.2
Q ss_pred ehhhhhHHHHHH-HHHHHHHHHHhhheeeeeccccchHHHhhhcCCCCCCCCCCCCCCCCChhHHHHHhhHHHHHHHhhh
Q 021217 134 VALVHPIVMGSL-LVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKELLKG 212 (316)
Q Consensus 134 ~aliHPi~M~~L-fa~tlyA~yLGwQ~Rr~Rt~g~ei~elkk~~~~~~~~~~g~~~~~~~sp~~~~i~~l~e~RKeLikg 212 (316)
.+++||++|+.+ |+|++|++|+|||||++|+.++.-++++..++.+ +..+. +.+..+.+..|..++++|||++++
T Consensus 2 l~liHP~lm~~~vf~~~~~~~~lG~q~R~rR~~~~~g~~~~~~~~~~-~l~~~---~~~~~~~~~~~~~~~~~~~~l~~~ 77 (175)
T PF13301_consen 2 LALIHPVLMGLLVFPVGGYAIYLGWQWRQRRLQENHGRWLTGGVVVA-VLIAL---AYSIARAIFLILALTGTRKELVKL 77 (175)
T ss_pred chHHhHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhhcccccc-chhcc---cchhhHHHHHHHHHHHHHHHHHhh
Confidence 468999999955 9999999999999999999988556665555543 22332 233348999999999999999999
Q ss_pred hhhHhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhhhhhcCC-hhHHHHHHHHHHHH
Q 021217 213 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGS-ETARNLHIALNALN 291 (316)
Q Consensus 213 ~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~MqkGr-~~aR~LHI~LNilL 291 (316)
++|++|+++|++++++++++++||+.+|+.++|++|++||+|+|+++++||++|++++|+|++|| ++||++|+++|+++
T Consensus 78 ~~r~~H~~~g~~ll~~~~L~~lGG~~~~~~~~~~lf~spH~~~Gl~~~~L~~~s~al~~~i~~g~~~~~R~lHi~lN~~~ 157 (175)
T PF13301_consen 78 KARDRHYRLGFALLAFMGLGALGGQLGTYRQNGKLFWSPHLWAGLAVVGLMAFSAALVPQIQKGNRPWARRLHIYLNSLA 157 (175)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCCCCccCchHHHHHHHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999985 59999999999999
Q ss_pred HHHHHHHhhchHHHHHHH
Q 021217 292 ILLFIWQIPTGIDIVFKV 309 (316)
Q Consensus 292 LlLFlwQaiTG~~IVqK~ 309 (316)
++||+||++||+++++||
T Consensus 158 l~Lf~~q~itG~~ill~i 175 (175)
T PF13301_consen 158 LLLFAWQAITGWRILLKI 175 (175)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999999986
No 2
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=98.45 E-value=3.5e-06 Score=68.88 Aligned_cols=91 Identities=22% Similarity=0.069 Sum_probs=76.0
Q ss_pred hhhHhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhhhhhc-------CChhHHHHHH
Q 021217 213 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQK-------GSETARNLHI 285 (316)
Q Consensus 213 ~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~Mqk-------Gr~~aR~LHI 285 (316)
.....|..+-.+.+.+.++|.+....+.-.+..+-|.+.|-+.|++.++++.++...+-.... .|+..+..|.
T Consensus 33 ~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~ 112 (137)
T PF03188_consen 33 WWFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLATFVLALLQPLLGFFRFFMPGLPRKRRPIWNKWHR 112 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHH
Confidence 345789999999888888888888877766666778999999999999999998875554422 3566777899
Q ss_pred HHHHHHHHHHHHHhhchH
Q 021217 286 ALNALNILLFIWQIPTGI 303 (316)
Q Consensus 286 ~LNilLLlLFlwQaiTG~ 303 (316)
.++.++.++...++.+|.
T Consensus 113 ~~G~~~~~l~~~~i~~G~ 130 (137)
T PF03188_consen 113 WLGYLIYVLAIATIFLGL 130 (137)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999997
No 3
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=98.31 E-value=1.2e-05 Score=66.17 Aligned_cols=90 Identities=18% Similarity=0.011 Sum_probs=75.8
Q ss_pred hhHhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhhhhhc-------CChhHHHHHHH
Q 021217 214 YRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQK-------GSETARNLHIA 286 (316)
Q Consensus 214 ~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~Mqk-------Gr~~aR~LHI~ 286 (316)
...-|..+..+-+.+++.|.+.+..+.-.+..+-|.+.|-+.|++...|++++...+-.... .|..++..|..
T Consensus 33 ~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~~~~~~s~H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~ 112 (129)
T smart00665 33 WFLLHVVLQILALVLGVIGLLAIFISHNESGIANFYSLHSWLGLAAFVLAGLQWLSGFLRPLPPGLPSKYRSYLNPYHRF 112 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCccchhHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHH
Confidence 45789999999999999999988888665555678999999999999999998887655422 26677789999
Q ss_pred HHHHHHHHHHHHhhchH
Q 021217 287 LNALNILLFIWQIPTGI 303 (316)
Q Consensus 287 LNilLLlLFlwQaiTG~ 303 (316)
++.+++.|-.+++++|.
T Consensus 113 ~G~~~~~la~~~~~lG~ 129 (129)
T smart00665 113 VGLAAFILAIVTIFLGL 129 (129)
T ss_pred HHHHHHHHHHHHHHccC
Confidence 99999999999999883
No 4
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=98.18 E-value=2.6e-05 Score=67.99 Aligned_cols=92 Identities=16% Similarity=0.048 Sum_probs=77.6
Q ss_pred hhHhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhhhh------h---cCChhHHHHH
Q 021217 214 YRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAM------Q---KGSETARNLH 284 (316)
Q Consensus 214 ~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~M------q---kGr~~aR~LH 284 (316)
....|..+..+.+.+.+.|.+....+-..+..+-|.+.|-+.|++.++|++++.+.+-.. . +.|...+..|
T Consensus 57 ~~~~H~~l~~la~~~~~~G~~~~~~~~~~~~~~hf~s~H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~~~~H 136 (183)
T cd08761 57 KVRLHWILQLLALLCILAGLVAIYYNKERNGKPHFTSWHGILGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKKYH 136 (183)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHHHHHH
Confidence 457899999999999999988888776666667889999999999999999998886532 1 2467778899
Q ss_pred HHHHHHHHHHHHHHhhchHHH
Q 021217 285 IALNALNILLFIWQIPTGIDI 305 (316)
Q Consensus 285 I~LNilLLlLFlwQaiTG~~I 305 (316)
..++.+++++-..++.+|.+-
T Consensus 137 ~~~G~~~~~l~~~t~~lGl~~ 157 (183)
T cd08761 137 RLSGYVAYLLGLATLVLGLET 157 (183)
T ss_pred HHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999854
No 5
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=98.05 E-value=8.4e-05 Score=61.07 Aligned_cols=89 Identities=13% Similarity=0.001 Sum_probs=75.5
Q ss_pred hhHhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhhhh--hc-----CChhHHHHHHH
Q 021217 214 YRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAM--QK-----GSETARNLHIA 286 (316)
Q Consensus 214 ~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~M--qk-----Gr~~aR~LHI~ 286 (316)
-+.-|.-+..+.+.+++.|.+.+..+.-.+..+-|.+.|-+.|++.+.|+.++...+-.. .+ .|...+..|..
T Consensus 35 ~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~~~h~~s~Hs~lGl~~~~l~~~q~~~G~~~~~~~~~~~~~r~~~~~~H~~ 114 (131)
T cd08554 35 LKLLHAILHLLAFVLGLVGLLAVFLFHNAGGIANLYSLHSWLGLATVLLFLLQFLSGFVLFLLPLLRLSYRSSLLPFHRF 114 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 446899999999999999999998887766667789999999999999999998886333 12 15678889999
Q ss_pred HHHHHHHHHHHHhhch
Q 021217 287 LNALNILLFIWQIPTG 302 (316)
Q Consensus 287 LNilLLlLFlwQaiTG 302 (316)
++.+++.+-.+.+++|
T Consensus 115 ~G~~~~~la~~t~~~G 130 (131)
T cd08554 115 FGLAIFVLAIATILLG 130 (131)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999887
No 6
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=97.68 E-value=0.00063 Score=59.37 Aligned_cols=131 Identities=16% Similarity=0.056 Sum_probs=96.9
Q ss_pred ccceehhhhhHHHHHHHHHHHHHHHHhhheeeeeccccchHHHhhhcCCCCCCCCCCCCCCCCChhHHHHHhhHHHHHHH
Q 021217 130 EGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKEL 209 (316)
Q Consensus 130 egr~~aliHPi~M~~Lfa~tlyA~yLGwQ~Rr~Rt~g~ei~elkk~~~~~~~~~~g~~~~~~~sp~~~~i~~l~e~RKeL 209 (316)
+.+.....|+++|...|....=.+.+-.+.++. .+
T Consensus 31 ~~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~--~~------------------------------------------- 65 (191)
T cd08760 31 SSDTLIKAHGVLMAIAWGILMPIGALLARYFLL--GD------------------------------------------- 65 (191)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CC-------------------------------------------
Confidence 345667899999997777766655554433211 00
Q ss_pred hhhhhhHhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhhhhhc----CChhHHHHHH
Q 021217 210 LKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQK----GSETARNLHI 285 (316)
Q Consensus 210 ikg~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~Mqk----Gr~~aR~LHI 285 (316)
+.++ .-|..+-.+-+.+.+.|.+.|..+. ....+-+.+.|.+.|+++++|++++...+-.... .|..++..|.
T Consensus 66 -~~~~-~~H~~~q~~~~~~~i~g~~~~~~~~-~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~~~~~~~~~R~~~~~~H~ 142 (191)
T cd08760 66 -PVWF-YLHAGLQLLAVLLAIAGFVLGIVLV-QGGGGSLNNAHAILGIIVLALAILQPLLGLLRPHPGSKKRSIWNWAHR 142 (191)
T ss_pred -chhH-HHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCcCcchhhhHHHHHHHHHHHHHHHhcCCCCCCcccchHHHHH
Confidence 0133 4799888888888888888888775 2334456899999999999999988776654322 3666788999
Q ss_pred HHHHHHHHHHHHHhhchHHHHHH
Q 021217 286 ALNALNILLFIWQIPTGIDIVFK 308 (316)
Q Consensus 286 ~LNilLLlLFlwQaiTG~~IVqK 308 (316)
.+..++.+|-.+|+.+|....+.
T Consensus 143 ~~G~~~~~l~~v~i~~G~~~~~~ 165 (191)
T cd08760 143 WLGRAALILAIVNIFLGLDLAGA 165 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999988764
No 7
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=97.64 E-value=0.00098 Score=57.87 Aligned_cols=89 Identities=15% Similarity=-0.008 Sum_probs=70.3
Q ss_pred hHhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhhhh--hcC-----ChhHHHHHHHH
Q 021217 215 RDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAM--QKG-----SETARNLHIAL 287 (316)
Q Consensus 215 rdrH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~M--qkG-----r~~aR~LHI~L 287 (316)
+.-|.-++.+.+.+++.|...=..+--.+..+-|++.|-|.|++.+.|..+++..+-.+ .++ |...+..|...
T Consensus 41 k~~H~~L~~la~~~~~~Gl~av~~~h~~~~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~ 120 (143)
T cd08763 41 KILHGLLHIMALVISLVGLVAVFDYHQANGYPDMYSLHSWCGILTFVLYFLQWLIGFSFFLFPGASFTLRSQYKPLHEFF 120 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHhHHHHHH
Confidence 45899888888888777776544444445556789999999999999999988887433 332 56666799999
Q ss_pred HHHHHHHHHHHhhchH
Q 021217 288 NALNILLFIWQIPTGI 303 (316)
Q Consensus 288 NilLLlLFlwQaiTG~ 303 (316)
+.+++++....+.+|.
T Consensus 121 G~~~f~la~~t~~lG~ 136 (143)
T cd08763 121 GRALFLSSVGTSLLGL 136 (143)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999997
No 8
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=97.63 E-value=0.0012 Score=57.45 Aligned_cols=89 Identities=16% Similarity=0.056 Sum_probs=66.5
Q ss_pred hHhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhh--hhhcC-----ChhHHHHHHHH
Q 021217 215 RDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVP--AMQKG-----SETARNLHIAL 287 (316)
Q Consensus 215 rdrH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p--~MqkG-----r~~aR~LHI~L 287 (316)
+.-|.-+-.+.+.+.+.|.+.=..+--.+..+-|++.|-|.|++.+.|.+++...+- ...++ |...+..|...
T Consensus 41 k~iH~~l~~la~~~~vvGl~avf~~~~~~~~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~ 120 (144)
T cd08766 41 KAVHLTLHLVALVLGIVGIYAAFKFHNEVGIPNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPGASRNTRAALLPWHVFL 120 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 357877666666666665543333333344456899999999999999999888774 33444 55666799999
Q ss_pred HHHHHHHHHHHhhchH
Q 021217 288 NALNILLFIWQIPTGI 303 (316)
Q Consensus 288 NilLLlLFlwQaiTG~ 303 (316)
+.+++++....+.+|.
T Consensus 121 G~~~~~la~~t~~lGl 136 (144)
T cd08766 121 GLAIYYLAIATAETGL 136 (144)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999997
No 9
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=97.45 E-value=0.0022 Score=59.23 Aligned_cols=90 Identities=18% Similarity=0.090 Sum_probs=67.7
Q ss_pred hhHhHHhhHHHHHHHHHHHhhhcceeeeec--CCCcCcchhHHHHHHHHHHHHHHHHhhh--hhhcC-ChhHH----HHH
Q 021217 214 YRDRHYNAGSILLGFGVLESVGGGVNTYLR--AGKLFPGPHLFAGAAITVLWALAAALVP--AMQKG-SETAR----NLH 284 (316)
Q Consensus 214 ~rdrH~~~GsiLL~L~vlgavgG~~~T~~r--~GkLF~gpHL~aGL~mv~Lml~SaAl~p--~MqkG-r~~aR----~LH 284 (316)
.+.-|.-+..+.+.+++.|...-.-+.-.+ .-+-|++.|-|.|++.+.|..++...+- ...++ +...| ..|
T Consensus 57 ~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~~~~~~r~~~~p~H 136 (214)
T cd08764 57 LKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWLGLTAVILFSLQWVGGFVSFLFPGLPETLRAAYLPLH 136 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhHHH
Confidence 456899998888888887754322222222 3446799999999999999999888774 23443 43444 699
Q ss_pred HHHHHHHHHHHHHHhhchH
Q 021217 285 IALNALNILLFIWQIPTGI 303 (316)
Q Consensus 285 I~LNilLLlLFlwQaiTG~ 303 (316)
...+.+++++...-+.+|.
T Consensus 137 ~~~Gl~~fvLaiaT~~lGl 155 (214)
T cd08764 137 VFFGLFIFVLAVATALLGI 155 (214)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997
No 10
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=97.41 E-value=0.0028 Score=55.96 Aligned_cols=89 Identities=16% Similarity=0.066 Sum_probs=64.8
Q ss_pred hHhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhhhhh--cC-----ChhHHHHHHHH
Q 021217 215 RDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQ--KG-----SETARNLHIAL 287 (316)
Q Consensus 215 rdrH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~Mq--kG-----r~~aR~LHI~L 287 (316)
+.-|.-+=.+.+.+++.|.+.=..+--.+..+-|+|.|-|.|++.+.|..+++..+-... ++ |...+..|+..
T Consensus 48 k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~~~p~H~~~ 127 (153)
T cd08765 48 KLIHAGLHILAFILAIISVVAVFVFHNAKNIPNMYSLHSWVGLAAVILYPLQLVLGISVYLLPVAPVRLRAALMPLHVYS 127 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 466776655555555555543333333345567899999999999999999888774433 32 45556699999
Q ss_pred HHHHHHHHHHHhhchH
Q 021217 288 NALNILLFIWQIPTGI 303 (316)
Q Consensus 288 NilLLlLFlwQaiTG~ 303 (316)
+.++++|-..-+.+|+
T Consensus 128 G~~i~~Lai~t~~lG~ 143 (153)
T cd08765 128 GLFIFGTVIATALMGI 143 (153)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999996
No 11
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=97.18 E-value=0.0033 Score=59.52 Aligned_cols=99 Identities=18% Similarity=0.125 Sum_probs=74.9
Q ss_pred hHhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhh--hhhcC-----ChhHHHHHHHH
Q 021217 215 RDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVP--AMQKG-----SETARNLHIAL 287 (316)
Q Consensus 215 rdrH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p--~MqkG-----r~~aR~LHI~L 287 (316)
|--|--+=++.+.+++.|...=+-+.-..+-..|++-|-|.|+..+.|-.++...+- +..+| |.....+|+.+
T Consensus 89 KliH~~LH~~Alvl~i~gl~avf~~hn~~~i~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs~lmP~H~~~ 168 (245)
T KOG1619|consen 89 KLIHLGLHIIALVLAIIGLCAVFDSHNLVGIANFYSLHSWLGLCVVILYSLQWVFGFFTFLFPGSPESYRSRLMPWHVFL 168 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHhhhhhHHHHH
Confidence 356877777777777777765555555555567899999999999999988776552 33343 56667799999
Q ss_pred HHHHHHHHHHHhhchHHHHHHHhhcc
Q 021217 288 NALNILLFIWQIPTGIDIVFKVLEFT 313 (316)
Q Consensus 288 NilLLlLFlwQaiTG~~IVqK~l~ft 313 (316)
++.++.+...|+.||.---.++.+++
T Consensus 169 Gl~~f~lai~ta~~Gl~ek~~f~~~~ 194 (245)
T KOG1619|consen 169 GLAIFILAIVTALTGLLEKLTFLCFG 194 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999995555566555
No 12
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.98 E-value=0.013 Score=53.13 Aligned_cols=88 Identities=13% Similarity=0.046 Sum_probs=63.6
Q ss_pred HhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhhh--hhcC-----ChhHHHHHHHHH
Q 021217 216 DRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPA--MQKG-----SETARNLHIALN 288 (316)
Q Consensus 216 drH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~--MqkG-----r~~aR~LHI~LN 288 (316)
.-|.-+=.+.+.+.+.|...=.-+--.+.-+-+++.|-|.|++.+.|..++...+-. ..++ |...+..|+..+
T Consensus 72 ~~H~~L~~~Al~~~vvGl~avf~~hn~~~~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p~~~~~~ra~~~p~H~~~G 151 (179)
T cd08762 72 LLHAGLLLLAFILTVIGLCAVFNFHNVHHTANLYSLHSWVGICTVALFTCQWVMGFTSFLLPWAPMWLRALVKPIHVFFG 151 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHH
Confidence 678777666666666655543333333334466899999999999999988766543 3332 444456999999
Q ss_pred HHHHHHHHHHhhchH
Q 021217 289 ALNILLFIWQIPTGI 303 (316)
Q Consensus 289 ilLLlLFlwQaiTG~ 303 (316)
..+++|....+.+|+
T Consensus 152 ~~if~Laiat~~lGl 166 (179)
T cd08762 152 AMILVLSIASCISGI 166 (179)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999996
No 13
>PLN02680 carbon-monoxide oxygenase
Probab=96.74 E-value=0.022 Score=53.49 Aligned_cols=91 Identities=16% Similarity=0.070 Sum_probs=65.1
Q ss_pred HhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhhhh--hcC-----ChhHHHHHHHHH
Q 021217 216 DRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAM--QKG-----SETARNLHIALN 288 (316)
Q Consensus 216 drH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~M--qkG-----r~~aR~LHI~LN 288 (316)
.-|.-+=.+.+.+.+.|...=.-+--.+..+-|+|.|-|.|++.+.|..++...+-.. .++ |......|+..+
T Consensus 81 ~iH~~L~~lA~~l~vvGl~avfk~hn~~~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~~~G 160 (232)
T PLN02680 81 LVHLTLQFLAFCLSLIGVWAALKFHNEKGIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPGGSRNSRASLLPWHVFFG 160 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Confidence 5687777776666666665422222222445779999999999999999888776433 332 333445999999
Q ss_pred HHHHHHHHHHhhchHHHHHH
Q 021217 289 ALNILLFIWQIPTGIDIVFK 308 (316)
Q Consensus 289 ilLLlLFlwQaiTG~~IVqK 308 (316)
.++++|....+.+|+ .+|
T Consensus 161 ~~if~LaiaT~~lG~--~Ek 178 (232)
T PLN02680 161 IYIYALAVATATTGI--LEK 178 (232)
T ss_pred HHHHHHHHHHHHHHH--HHH
Confidence 999999999999997 455
No 14
>PLN02810 carbon-monoxide oxygenase
Probab=96.66 E-value=0.04 Score=51.95 Aligned_cols=89 Identities=15% Similarity=0.102 Sum_probs=63.2
Q ss_pred hHhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhh--hhhcC-----ChhHHHHHHHH
Q 021217 215 RDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVP--AMQKG-----SETARNLHIAL 287 (316)
Q Consensus 215 rdrH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p--~MqkG-----r~~aR~LHI~L 287 (316)
+.-|.-+=.+.+.+.+.|...=.-+--.+.-+-+++.|-|.|++.+.|..++...+- ...++ |......|+..
T Consensus 80 K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~~i~nlySLHSWlGl~tv~Lf~lQw~~Gf~~Fl~P~~~~~~R~~~lP~Hv~~ 159 (231)
T PLN02810 80 KLIHLVLHAIALILGIFGICAAFKNHNESGIANLYSLHSWLGIGIISLYGIQWIYGFIVFFFPGGSTNLRSGSLPWHVLF 159 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHH
Confidence 356776666666666655543332222233346789999999999999998877765 34554 33334599999
Q ss_pred HHHHHHHHHHHhhchH
Q 021217 288 NALNILLFIWQIPTGI 303 (316)
Q Consensus 288 NilLLlLFlwQaiTG~ 303 (316)
+..+.+|....+.+|+
T Consensus 160 Gl~if~LAiata~lGi 175 (231)
T PLN02810 160 GLFVYILAVGNAALGF 175 (231)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999997
No 15
>PLN02351 cytochromes b561 family protein
Probab=96.03 E-value=0.11 Score=49.41 Aligned_cols=85 Identities=18% Similarity=0.148 Sum_probs=61.6
Q ss_pred hHhHHhhHHHHHHHHHHHhhhcceeeeecCC---CcCcchhHHHHHHHHHHHHHHHHhhh--hhhcC-----ChhHHHHH
Q 021217 215 RDRHYNAGSILLGFGVLESVGGGVNTYLRAG---KLFPGPHLFAGAAITVLWALAAALVP--AMQKG-----SETARNLH 284 (316)
Q Consensus 215 rdrH~~~GsiLL~L~vlgavgG~~~T~~r~G---kLF~gpHL~aGL~mv~Lml~SaAl~p--~MqkG-----r~~aR~LH 284 (316)
+.-|.-+=.+.+.+.+.|... -.-+.+ +-+++-|-|.|++.+.|..++...+- ...++ |...+..|
T Consensus 84 K~lH~~Lh~~Ali~~vvGl~a----~fh~~~~~i~nlySLHSWlGl~tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~~P~H 159 (242)
T PLN02351 84 KSVHLWLQGLALASGVFGIWT----KFHGQDGIVANFYSLHSWMGLICVSLFGAQWLTGFMSFWHRGEMRTTRTTVLPWH 159 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHhHHH
Confidence 466776666666666655554 222322 34799999999999999988776553 33443 44455699
Q ss_pred HHHHHHHHHHHHHHhhchH
Q 021217 285 IALNALNILLFIWQIPTGI 303 (316)
Q Consensus 285 I~LNilLLlLFlwQaiTG~ 303 (316)
+..+..+++|...-+.+|+
T Consensus 160 v~~Gl~if~LaiaTa~lGl 178 (242)
T PLN02351 160 VFLGLYTYGLAVATAETGL 178 (242)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999996
No 16
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=91.83 E-value=1.5 Score=36.80 Aligned_cols=90 Identities=16% Similarity=0.018 Sum_probs=60.8
Q ss_pred hhhHhHHhhHHHHHHHHHHHhhhcceeeeecCCCcC--cchhHHHHHHHHHHHHHHHHhh--------------------
Q 021217 213 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLF--PGPHLFAGAAITVLWALAAALV-------------------- 270 (316)
Q Consensus 213 ~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF--~gpHL~aGL~mv~Lml~SaAl~-------------------- 270 (316)
..|-.|+-.-..++++.+.|.......-....+..+ ...|.++|+++.+++++-....
T Consensus 5 ~~r~~HW~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (182)
T PF01292_consen 5 FTRILHWLNALSFIALIATGLWIHFPPPGLYFGDFGGVRNWHVIAGLLLFALLIFRLLWRWRRLFPWSDDVFFQVKNYLY 84 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH
Confidence 467788887777777777777654444444445444 6789999999999987765555
Q ss_pred -------hhhhcCChhHHHHHHHHHHHHHHHHHHHhhchHHHH
Q 021217 271 -------PAMQKGSETARNLHIALNALNILLFIWQIPTGIDIV 306 (316)
Q Consensus 271 -------p~MqkGr~~aR~LHI~LNilLLlLFlwQaiTG~~IV 306 (316)
|.-.+.++..|. ...++.++.+.+++||+-..
T Consensus 85 ~~~~~~~p~~~~~~~~~~~----~~~~~~~~~~~~~iTG~~~~ 123 (182)
T PF01292_consen 85 FLLRGKPPPAGKYNPGQKI----VHWVLYLLLLLLPITGLLLW 123 (182)
T ss_pred HHhcCCCCCCCcCChHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 112222444444 55667788888999998554
No 17
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=91.49 E-value=1.4 Score=36.70 Aligned_cols=90 Identities=21% Similarity=0.156 Sum_probs=52.8
Q ss_pred hhhHhHHhhHHHHHHHHHHHhhhccee------------------eeecC----CCcCcchhHHHHHHHHHHHHHHHHhh
Q 021217 213 SYRDRHYNAGSILLGFGVLESVGGGVN------------------TYLRA----GKLFPGPHLFAGAAITVLWALAAALV 270 (316)
Q Consensus 213 ~~rdrH~~~GsiLL~L~vlgavgG~~~------------------T~~r~----GkLF~gpHL~aGL~mv~Lml~SaAl~ 270 (316)
..+.-|...|.++++++++-.+-+... ...+. ..-+....-++-+++..++++...++
T Consensus 45 ~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG 124 (188)
T PF00033_consen 45 LLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIPQYRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITG 124 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHHHHHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999998888877777666 11110 00111222222222222233333333
Q ss_pred hhh---------------hcCChhHHHHHHHHHHHHHHHHHHHhhch
Q 021217 271 PAM---------------QKGSETARNLHIALNALNILLFIWQIPTG 302 (316)
Q Consensus 271 p~M---------------qkGr~~aR~LHI~LNilLLlLFlwQaiTG 302 (316)
-.| .....++|.+|.....+++++++.+++-.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iH~~~~~ll~~~i~~Hi~~a 171 (188)
T PF00033_consen 125 LIMLWFFWWPLPPWLLPPPGLAEWARLIHFILAYLLLAFIIIHIYAA 171 (188)
T ss_dssp HHC-----TTTTGGGS-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhcccchhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 12378999999999999999998887643
No 18
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=90.25 E-value=3.5 Score=36.13 Aligned_cols=102 Identities=17% Similarity=0.133 Sum_probs=81.2
Q ss_pred cccceehhhhhHHHHHHHHHHHHHHHHhhheeeeeccccchHHHhhhcCCCCCCCCCCCCCCCCChhHHHHHhhHHHHHH
Q 021217 129 LEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKE 208 (316)
Q Consensus 129 ~egr~~aliHPi~M~~Lfa~tlyA~yLGwQ~Rr~Rt~g~ei~elkk~~~~~~~~~~g~~~~~~~sp~~~~i~~l~e~RKe 208 (316)
...+.--.+|=..|..-++.++-+..+|+... +...
T Consensus 63 ~~~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~--~~~~------------------------------------------ 98 (191)
T cd08760 63 LGDPVWFYLHAGLQLLAVLLAIAGFVLGIVLV--QGGG------------------------------------------ 98 (191)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCC------------------------------------------
Confidence 44566778999999987888888888887754 1111
Q ss_pred HhhhhhhHhHHhhHHHHHHHHHHHhhhcceeeeecC--CCcCcchhHHHHHHHHHHHHHHHHhhhhhhcCC
Q 021217 209 LLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRA--GKLFPGPHLFAGAAITVLWALAAALVPAMQKGS 277 (316)
Q Consensus 209 Likg~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~--GkLF~gpHL~aGL~mv~Lml~SaAl~p~MqkGr 277 (316)
..++.-|..+|.+++.++++-.+.|...-.... ...+...|.+.|.+...|-.+...++-.+...+
T Consensus 99 ---~~~~~~H~~lGl~~~~l~~lQ~~~G~~~~~~~~~~R~~~~~~H~~~G~~~~~l~~v~i~~G~~~~~~~ 166 (191)
T cd08760 99 ---GSLNNAHAILGIIVLALAILQPLLGLLRPHPGSKKRSIWNWAHRWLGRAALILAIVNIFLGLDLAGAG 166 (191)
T ss_pred ---CCCcCcchhhhHHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 157789999999999999999999987655442 456679999999999999999999999997743
No 19
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=89.85 E-value=1.3 Score=36.23 Aligned_cols=96 Identities=16% Similarity=0.081 Sum_probs=69.0
Q ss_pred ccceehhhhhHHHHHHHHHHHHHHHHhhheeeeeccccchHHHhhhcCCCCCCCCCCCCCCCCChhHHHHHhhHHHHHHH
Q 021217 130 EGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKEL 209 (316)
Q Consensus 130 egr~~aliHPi~M~~Lfa~tlyA~yLGwQ~Rr~Rt~g~ei~elkk~~~~~~~~~~g~~~~~~~sp~~~~i~~l~e~RKeL 209 (316)
+.+.--.+|-+.|...++..+-+....+..+... +
T Consensus 30 ~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~--~------------------------------------------- 64 (137)
T PF03188_consen 30 SRKWWFRIHWILQVLALVFAIIGFVAIFINKNRN--G------------------------------------------- 64 (137)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--C-------------------------------------------
Confidence 4445567788888766666666666666544331 1
Q ss_pred hhhhhhHhHHhhHHHHHHHHHHHhhhcceeeeecCCC-----cCcchhHHHHHHHHHHHHHHHHhhh
Q 021217 210 LKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGK-----LFPGPHLFAGAAITVLWALAAALVP 271 (316)
Q Consensus 210 ikg~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~Gk-----LF~gpHL~aGL~mv~Lml~SaAl~p 271 (316)
+..+..-|-.+|.+.+.+.++-.+.|...-+....+ .+.-.|-+.|..+..|..++..++-
T Consensus 65 -~~h~~s~H~~lG~~~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~G~ 130 (137)
T PF03188_consen 65 -KPHFKSWHSILGLATFVLALLQPLLGFFRFFMPGLPRKRRPIWNKWHRWLGYLIYVLAIATIFLGL 130 (137)
T ss_pred -CCCCCCchhhhhHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 125778999999999999999999999887742222 3434499999999999888877765
No 20
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=88.37 E-value=1.5 Score=36.09 Aligned_cols=83 Identities=13% Similarity=-0.059 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhhhcceeeee--c--CCCcCcchhHHHHHHHHHHHHHHHHhhhhhhc--CChhHHHHHHHHHHHHHHHH
Q 021217 222 GSILLGFGVLESVGGGVNTYL--R--AGKLFPGPHLFAGAAITVLWALAAALVPAMQK--GSETARNLHIALNALNILLF 295 (316)
Q Consensus 222 GsiLL~L~vlgavgG~~~T~~--r--~GkLF~gpHL~aGL~mv~Lml~SaAl~p~Mqk--Gr~~aR~LHI~LNilLLlLF 295 (316)
|.+|..-+++..-+|+..... + ..+.+..-|........++.+++..+.-.... +.+-....|..++++.++|+
T Consensus 3 ~~lm~~~f~~l~p~gil~~r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~~~~~~s~H~~lGl~~~~l~ 82 (129)
T smart00665 3 PVLMILGFGFLMGEAILVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISHNESGIANFYSLHSWLGLAAFVLA 82 (129)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCccchhHHHHHHHHHHH
Confidence 344444444445555555542 2 22344678988888888888877777665533 23457789999999999999
Q ss_pred HHHhhchHH
Q 021217 296 IWQIPTGID 304 (316)
Q Consensus 296 lwQaiTG~~ 304 (316)
+.|.+.|.-
T Consensus 83 ~~Q~~~G~~ 91 (129)
T smart00665 83 GLQWLSGFL 91 (129)
T ss_pred HHHHHHHHH
Confidence 999999975
No 21
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=86.10 E-value=3.6 Score=33.82 Aligned_cols=82 Identities=18% Similarity=0.064 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhhcceeeee--cCCC-cCcchhHHHHHHHHHHHHHHHHhhhhhh--cCChhHHHHHHHHHHHHHHHHHHH
Q 021217 224 ILLGFGVLESVGGGVNTYL--RAGK-LFPGPHLFAGAAITVLWALAAALVPAMQ--KGSETARNLHIALNALNILLFIWQ 298 (316)
Q Consensus 224 iLL~L~vlgavgG~~~T~~--r~Gk-LF~gpHL~aGL~mv~Lml~SaAl~p~Mq--kGr~~aR~LHI~LNilLLlLFlwQ 298 (316)
+|..-+++...+|++.... ..++ ....-|.........+.+++..++-... ++..-....|..++++.++|+..|
T Consensus 8 lm~~g~~~l~~~~il~~r~~~~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~~~h~~s~Hs~lGl~~~~l~~~q 87 (131)
T cd08554 8 LMVIGFVFLMGEALLVYRVFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFLFHNAGGIANLYSLHSWLGLATVLLFLLQ 87 (131)
T ss_pred HHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHHH
Confidence 3443344444455554333 1122 3356788888877777777666666553 234456789999999999999999
Q ss_pred hhchHHH
Q 021217 299 IPTGIDI 305 (316)
Q Consensus 299 aiTG~~I 305 (316)
..+|.-.
T Consensus 88 ~~~G~~~ 94 (131)
T cd08554 88 FLSGFVL 94 (131)
T ss_pred HHHHHHH
Confidence 9999755
No 22
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=85.71 E-value=1.4 Score=29.48 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=26.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhchHHHH
Q 021217 277 SETARNLHIALNALNILLFIWQIPTGIDIV 306 (316)
Q Consensus 277 r~~aR~LHI~LNilLLlLFlwQaiTG~~IV 306 (316)
+.++|.+|..+..+..+..+..++||.-++
T Consensus 2 r~~~~~~H~~~g~~~~~~ll~~~lTG~~l~ 31 (34)
T PF13172_consen 2 RKFWRKIHRWLGLIAAIFLLLLALTGALLN 31 (34)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999998543
No 23
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=85.62 E-value=4.6 Score=35.35 Aligned_cols=61 Identities=20% Similarity=0.157 Sum_probs=49.7
Q ss_pred hhhHhHHhhHHHHHHHHHHHhhhcceeeee-------cCCCcCcchhHHHHHHHHHHHHHHHHhhhhh
Q 021217 213 SYRDRHYNAGSILLGFGVLESVGGGVNTYL-------RAGKLFPGPHLFAGAAITVLWALAAALVPAM 273 (316)
Q Consensus 213 ~~rdrH~~~GsiLL~L~vlgavgG~~~T~~-------r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~M 273 (316)
.+..-|-.+|.+.+.++++-.+.|...-+. ...+.+.-.|-+.|..+..|..++..++-+-
T Consensus 90 hf~s~H~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~ 157 (183)
T cd08761 90 HFTSWHGILGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKKYHRLSGYVAYLLGLATLVLGLET 157 (183)
T ss_pred CccchhHHHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 577899999999999999999999864432 2344567889999999999999888887654
No 24
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=82.65 E-value=5.9 Score=33.04 Aligned_cols=93 Identities=14% Similarity=0.003 Sum_probs=55.5
Q ss_pred hhhHhHHhhHHHHHHHHHHHhhhc----ceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhhhh---------------
Q 021217 213 SYRDRHYNAGSILLGFGVLESVGG----GVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAM--------------- 273 (316)
Q Consensus 213 ~~rdrH~~~GsiLL~L~vlgavgG----~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~M--------------- 273 (316)
..|--|.-....++.+.+.|...+ ..............-|.++|+++.+++++=....-.=
T Consensus 7 ~~R~~Hw~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (188)
T PF00033_consen 7 FTRLLHWLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIP 86 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHH
Confidence 467889988777777777666654 2222222233446899999999988776633322211
Q ss_pred ---------hcCChhHHHHHHHHHHHHHHHHHHHhhchHHH
Q 021217 274 ---------QKGSETARNLHIALNALNILLFIWQIPTGIDI 305 (316)
Q Consensus 274 ---------qkGr~~aR~LHI~LNilLLlLFlwQaiTG~~I 305 (316)
.+...+.....-..-.++.++.+.+++||+-.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~ 127 (188)
T PF00033_consen 87 QYRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIM 127 (188)
T ss_dssp HHHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01223333344455556677788999999866
No 25
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=78.80 E-value=14 Score=34.63 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=26.4
Q ss_pred hhHhHHhhHHHHHHHHHHHhhhcceeeeecCCC
Q 021217 214 YRDRHYNAGSILLGFGVLESVGGGVNTYLRAGK 246 (316)
Q Consensus 214 ~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~Gk 246 (316)
-|.+|..+|+.+++..++.+++|.+..+...+.
T Consensus 11 er~k~~~~G~~vl~ta~la~~s~~~a~~~~~~~ 43 (301)
T PF14362_consen 11 ERNKYAGIGAAVLFTALLAGLSGGYALYTVFGG 43 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 357889999999999999988888777665543
No 26
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=73.68 E-value=8 Score=26.57 Aligned_cols=30 Identities=30% Similarity=0.256 Sum_probs=26.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhchHHHH
Q 021217 277 SETARNLHIALNALNILLFIWQIPTGIDIV 306 (316)
Q Consensus 277 r~~aR~LHI~LNilLLlLFlwQaiTG~~IV 306 (316)
+++++.+|..+.+++-++++..++||.-.+
T Consensus 1 rr~~~~~H~W~Gl~~g~~l~~~~~tG~~~~ 30 (37)
T PF13706_consen 1 RRILRKLHRWLGLILGLLLFVIFLTGAVMV 30 (37)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 467899999999999999999999996544
No 27
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=73.45 E-value=21 Score=33.51 Aligned_cols=84 Identities=15% Similarity=0.050 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhhhcceeeeecC-CCcCcchhHHHHHHHHHHHHHHHHhhhhhh--cCChhHHHHHHHHHHHHHHHHHHH
Q 021217 222 GSILLGFGVLESVGGGVNTYLRA-GKLFPGPHLFAGAAITVLWALAAALVPAMQ--KGSETARNLHIALNALNILLFIWQ 298 (316)
Q Consensus 222 GsiLL~L~vlgavgG~~~T~~r~-GkLF~gpHL~aGL~mv~Lml~SaAl~p~Mq--kGr~~aR~LHI~LNilLLlLFlwQ 298 (316)
..+.+.++++-.+.|.......- .......|+..++++.+++...+.....-. ..+...+.--..+-...+++...|
T Consensus 103 ~~~~~~l~~~Q~~lG~~~V~~~l~~~~~~~~Hl~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~q 182 (302)
T PF02628_consen 103 ALLALVLVILQGLLGAWTVLSGLVSPYVVTLHLLLALLIFALLVWLALRARRPEESPRRLPRPRRLRWLAWAALVLVFIQ 182 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccchhHHHHHHHHHHHHHHH
Confidence 34444555554444444444442 566689999999999998887666655541 111111222223344556677888
Q ss_pred hhchHHH
Q 021217 299 IPTGIDI 305 (316)
Q Consensus 299 aiTG~~I 305 (316)
.+.|..+
T Consensus 183 i~lGa~v 189 (302)
T PF02628_consen 183 IALGALV 189 (302)
T ss_pred Hhcccee
Confidence 8888633
No 28
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=71.34 E-value=25 Score=28.09 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=44.6
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhc-CChhHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q 021217 250 GPHLFAGAAITVLWALAAALVPAMQK-GSETARNLHIALNALNILLFIWQIPTGIDIVFKV 309 (316)
Q Consensus 250 gpHL~aGL~mv~Lml~SaAl~p~Mqk-Gr~~aR~LHI~LNilLLlLFlwQaiTG~~IVqK~ 309 (316)
..|...|+..+.+.++-++..-.+.. .....+..=.++.++.+.+...|++-|-+.|-+|
T Consensus 41 ~~H~~~~~~~~~l~~~l~~w~~~~r~~~~~~~~~~~l~ls~~~~~ll~~~g~lGG~LVy~~ 101 (104)
T PF09990_consen 41 WLHAILGLVALGLFLLLAIWRWLWRRRDPRAVSPFGLALSLLGVVLLLVTGWLGGELVYRY 101 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHhHHHHHHHc
Confidence 67999999998888883333333322 2235667788899999999999999999998764
No 29
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=70.20 E-value=12 Score=32.77 Aligned_cols=58 Identities=16% Similarity=0.025 Sum_probs=45.2
Q ss_pred hhhHhHHhhHHHHHHHHHHHhhhcceeeeec-----CCCcCcchhHHHHHHHHHHHHHHHHhh
Q 021217 213 SYRDRHYNAGSILLGFGVLESVGGGVNTYLR-----AGKLFPGPHLFAGAAITVLWALAAALV 270 (316)
Q Consensus 213 ~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r-----~GkLF~gpHL~aGL~mv~Lml~SaAl~ 270 (316)
.+...|-.+|.+.+.+..+-.+.|+..=++. ..+.....|-+.|+.+-+|.+.++.++
T Consensus 73 hf~SlHswlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~f~la~~t~~lG 135 (143)
T cd08763 73 DMYSLHSWCGILTFVLYFLQWLIGFSFFLFPGASFTLRSQYKPLHEFFGRALFLSSVGTSLLG 135 (143)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999897542222 224446789999999999888877665
No 30
>PF02322 Cyto_ox_2: Cytochrome oxidase subunit II; InterPro: IPR003317 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=68.11 E-value=36 Score=33.10 Aligned_cols=65 Identities=25% Similarity=0.322 Sum_probs=37.2
Q ss_pred cccchhhhhhccccCchhhhhccC-cc---cccccceehhhhhHHHH-HHHHHHHHHHHHhhheeeeeccc
Q 021217 101 AVLPVTTITLPFLLDTKDALAVNG-EF---GILEGRSVALVHPIVMG-SLLVYTLWAGYLGWQWRRVRTIQ 166 (316)
Q Consensus 101 ~~~~~~~~~~p~~~~~~~a~a~~g-~~---g~~egr~~aliHPi~M~-~Lfa~tlyA~yLGwQ~Rr~Rt~g 166 (316)
.....+++..|++++.--+.-..| .. |-..|--..|++|.... ++++.++| .++|--|-..||.+
T Consensus 116 ~~~~~gSll~~~~~G~~~g~~~~G~p~~~~~~~~g~~~~~l~pf~ll~Gl~~v~~~-~~~GA~~l~~kt~g 185 (328)
T PF02322_consen 116 WVFFIGSLLPPFLLGVALGNLVSGLPIDANGNYTGGFFDLLSPFSLLGGLAVVALF-ALHGAVFLALKTEG 185 (328)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHcCCcccccccccCchHHhccHHHHHHHHHHHHHH-HHHHHHHHHhhccH
Confidence 345566777888887644333333 11 33445557789998777 55555554 45555555454444
No 31
>TIGR02796 tolQ TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species
Probab=64.13 E-value=22 Score=32.53 Aligned_cols=50 Identities=22% Similarity=0.177 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhhcceeeeecCCCcC--cchhHHHHHHHHHHHHHHHHhhh
Q 021217 222 GSILLGFGVLESVGGGVNTYLRAGKLF--PGPHLFAGAAITVLWALAAALVP 271 (316)
Q Consensus 222 GsiLL~L~vlgavgG~~~T~~r~GkLF--~gpHL~aGL~mv~Lml~SaAl~p 271 (316)
+++.=.+|++|+|.||+.+...-+.-. ..+-..+|=+-.+|+..++.+.-
T Consensus 129 ~~~aPllGLLGTV~Gmi~aF~~i~~~~g~~~~~~la~GI~~ALitTa~GL~v 180 (215)
T TIGR02796 129 GSTSPFIGLFGTVWGIMHSFQAIGGSKNQATLAVVAPGIAEALIATAIGLFA 180 (215)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444447999999999999887765422 34455555555555555554443
No 32
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=63.19 E-value=20 Score=31.40 Aligned_cols=58 Identities=21% Similarity=0.068 Sum_probs=44.8
Q ss_pred hhhHhHHhhHHHHHHHHHHHhhhcceeeeecCC-----CcCcchhHHHHHHHHHHHHHHHHhh
Q 021217 213 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAG-----KLFPGPHLFAGAAITVLWALAAALV 270 (316)
Q Consensus 213 ~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~G-----kLF~gpHL~aGL~mv~Lml~SaAl~ 270 (316)
.+..-|-.+|.+.+.+..+-.+.|...=+...+ +-....|-+.|+++-+|.++++.++
T Consensus 73 ~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~~~la~~t~~lG 135 (144)
T cd08766 73 NLYSLHSWLGIGTISLFGLQWLFGFVTFWFPGASRNTRAALLPWHVFLGLAIYYLAIATAETG 135 (144)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466889999999999999999999865333332 2335689999999988877766654
No 33
>PRK06743 flagellar motor protein MotP; Reviewed
Probab=62.48 E-value=35 Score=32.59 Aligned_cols=42 Identities=7% Similarity=0.128 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHH
Q 021217 220 NAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWAL 265 (316)
Q Consensus 220 ~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~ 265 (316)
.+|.+.=++|++|++.|++.+..+-++ |-..++-.-++|+..
T Consensus 145 ~~a~~AP~lGllGTVlGLI~~~~~l~~----p~~lg~gIa~ALvtT 186 (254)
T PRK06743 145 KIGDFAPAWGMIGTLIGLIIMLQNLQD----TSQIGTGMAVAMLTT 186 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHccCC----HHHHHHHHHHHHHHH
Confidence 567777789999999999998877653 444444444444433
No 34
>PRK08456 flagellar motor protein MotA; Validated
Probab=62.05 E-value=13 Score=34.92 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=24.4
Q ss_pred HhhHHHHHHHHHHHhhhcceeeeecCCC
Q 021217 219 YNAGSILLGFGVLESVGGGVNTYLRAGK 246 (316)
Q Consensus 219 ~~~GsiLL~L~vlgavgG~~~T~~r~Gk 246 (316)
..+|.+.=++|++|++.|++.+..+-++
T Consensus 147 ~~~a~~AP~lGllGTVlGlI~~~~~l~d 174 (257)
T PRK08456 147 ITAGETCPTMGLVGAVMGLMLALQKLDN 174 (257)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcCC
Confidence 3788999999999999999999877763
No 35
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=58.93 E-value=43 Score=27.21 Aligned_cols=44 Identities=18% Similarity=0.247 Sum_probs=34.0
Q ss_pred hhhHhHHhhHHHHHHHHHHHhhhcceeeeecCCCcC---cchhHHHH
Q 021217 213 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLF---PGPHLFAG 256 (316)
Q Consensus 213 ~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF---~gpHL~aG 256 (316)
+....|..+|-+-+..++.+++.|++.+....+..+ .+-|+.+.
T Consensus 4 k~~~~HR~lGrvyv~~~~~~a~sa~~i~~~~~~g~~~~~~~~~~la~ 50 (103)
T PF10067_consen 4 KGPRLHRWLGRVYVAAMLISALSALFIAFYAPGGLWGGFSGFHLLAV 50 (103)
T ss_pred CcccHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 567899999999999999999999998887665543 24444443
No 36
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=56.93 E-value=30 Score=31.36 Aligned_cols=58 Identities=16% Similarity=0.229 Sum_probs=46.7
Q ss_pred hhhHhHHhhHHHHHHHHHHHhhhcceeeeecCCC--cCcchhHHHHHHHHHHHHHHHHhhhhh
Q 021217 213 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGK--LFPGPHLFAGAAITVLWALAAALVPAM 273 (316)
Q Consensus 213 ~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~Gk--LF~gpHL~aGL~mv~Lml~SaAl~p~M 273 (316)
.|..-|+..|..+++++++.+. ..+.+..|+ ....-|.+.+.++++|.+..+.++.++
T Consensus 112 lf~spH~~~Gl~~~~L~~~s~a---l~~~i~~g~~~~~R~lHi~lN~~~l~Lf~~q~itG~~i 171 (175)
T PF13301_consen 112 LFWSPHLWAGLAVVGLMAFSAA---LVPQIQKGNRPWARRLHIYLNSLALLLFAWQAITGWRI 171 (175)
T ss_pred CccCchHHHHHHHHHHHHHHHH---HHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667799999999999887765 344555543 457999999999999999999988765
No 37
>COG1612 CtaA Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]
Probab=56.37 E-value=1e+02 Score=30.56 Aligned_cols=82 Identities=20% Similarity=0.137 Sum_probs=44.6
Q ss_pred HHHHHHHHH-HhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhhhhhc-CChhHH--HHHHHHHHHHHHHHHHH
Q 021217 223 SILLGFGVL-ESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQK-GSETAR--NLHIALNALNILLFIWQ 298 (316)
Q Consensus 223 siLL~L~vl-gavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~Mqk-Gr~~aR--~LHI~LNilLLlLFlwQ 298 (316)
.+++++..+ +++||.+++..-+ .-....|+..++.+...+++-+...-+-++ +++..+ .-=-..-.+.+++...|
T Consensus 114 i~~l~l~~lQgliG~~tV~~gl~-~~~~~~h~~la~~l~aa~~il~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~ 192 (323)
T COG1612 114 ILALALLILQGLIGGWTVTSGLL-PRIVASHLRLAMHLFAALVILALLIWTADGPGSPRLADGKKLRGLAGIGLGLLYLQ 192 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHHHHHHHHHhcccccCccchhccchhHHHHHHHHHHHHHH
Confidence 344444444 5555555554444 455789999998888777665554444433 211111 11112233455666778
Q ss_pred hhchHHH
Q 021217 299 IPTGIDI 305 (316)
Q Consensus 299 aiTG~~I 305 (316)
+++|--+
T Consensus 193 i~~GalV 199 (323)
T COG1612 193 IYLGALV 199 (323)
T ss_pred HHhhhhh
Confidence 8888644
No 38
>COG4117 Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) [Energy production and conversion]
Probab=53.84 E-value=1.2e+02 Score=29.13 Aligned_cols=30 Identities=27% Similarity=0.329 Sum_probs=24.8
Q ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHhhch
Q 021217 273 MQKGSETARNLHIALNALNILLFIWQIPTG 302 (316)
Q Consensus 273 MqkGr~~aR~LHI~LNilLLlLFlwQaiTG 302 (316)
+--|+.++|.+|.++-.++++.+.++.+-+
T Consensus 173 ~~Ggrq~ar~vHFa~m~~~v~FiivHl~l~ 202 (221)
T COG4117 173 LPGGRQTARWVHFALMLIVVGFIIVHLLLC 202 (221)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334689999999999999998888887654
No 39
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=52.51 E-value=74 Score=29.82 Aligned_cols=92 Identities=21% Similarity=0.071 Sum_probs=60.3
Q ss_pred hhhHhHHhhHHHHHHHHHHHhhhcceeeeecC-----CCcCcchhHHHHHHHHHHHHHHHHhhhhh-----hcCChhHHH
Q 021217 213 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRA-----GKLFPGPHLFAGAAITVLWALAAALVPAM-----QKGSETARN 282 (316)
Q Consensus 213 ~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~-----GkLF~gpHL~aGL~mv~Lml~SaAl~p~M-----qkGr~~aR~ 282 (316)
.+...|-.+|.+.+.+..+-.+.|.+.-+... .+.....|-+.|+.+-+|.+.++.++-.= ++.-.....
T Consensus 92 hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~~~~~~r~~~~p~H~~~Gl~~fvLaiaT~~lGl~ek~~f~~~~~~~~~~ 171 (214)
T cd08764 92 NMYSLHSWLGLTAVILFSLQWVGGFVSFLFPGLPETLRAAYLPLHVFFGLFIFVLAVATALLGITEKAFFSLNKYSNLPA 171 (214)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCh
Confidence 56788999999999999999999986533321 12334579999999999888877766421 111112223
Q ss_pred HHHHHHHHHHHHHHHHhhchHH
Q 021217 283 LHIALNALNILLFIWQIPTGID 304 (316)
Q Consensus 283 LHI~LNilLLlLFlwQaiTG~~ 304 (316)
-....|++-+++.+.-++-..-
T Consensus 172 e~~l~N~~gl~~~~fg~~V~~~ 193 (214)
T cd08764 172 EGVLGNFIGIVLVIFGGLVVYL 193 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4556788777766655444333
No 40
>PLN02680 carbon-monoxide oxygenase
Probab=52.19 E-value=38 Score=32.23 Aligned_cols=88 Identities=20% Similarity=0.127 Sum_probs=59.7
Q ss_pred hhhHhHHhhHHHHHHHHHHHhhhcceeeeecCC-----CcCcchhHHHHHHHHHHHHHHHHhhhhhhc--------CChh
Q 021217 213 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAG-----KLFPGPHLFAGAAITVLWALAAALVPAMQK--------GSET 279 (316)
Q Consensus 213 ~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~G-----kLF~gpHL~aGL~mv~Lml~SaAl~p~Mqk--------Gr~~ 279 (316)
.+...|-.+|.+.+.+..+=.+.|...=+...+ +.....|.+.|+.+-+|.+.++.++- .+| +-..
T Consensus 112 nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~~~G~~if~LaiaT~~lG~-~Ek~~f~~~~~~~~~ 190 (232)
T PLN02680 112 NFYSLHSWLGLACLFLFSLQWAAGFVTFWYPGGSRNSRASLLPWHVFFGIYIYALAVATATTGI-LEKATFLQSNKVISR 190 (232)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCCccCC
Confidence 566889999999999999999999876333332 23456899999999998888777653 221 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 021217 280 ARNLHIALNALNILLFIWQIPT 301 (316)
Q Consensus 280 aR~LHI~LNilLLlLFlwQaiT 301 (316)
...=....|++-+++.+.-++-
T Consensus 191 ~~~e~~lvN~~gl~~~~fg~~V 212 (232)
T PLN02680 191 YSTEAMLVNSLGILIVVLGGFV 212 (232)
T ss_pred CCchhhhHhHHHHHHHHHHHHH
Confidence 2234567787777666554433
No 41
>COG4648 Predicted membrane protein [Function unknown]
Probab=50.81 E-value=52 Score=30.88 Aligned_cols=47 Identities=23% Similarity=0.229 Sum_probs=40.1
Q ss_pred HHHHHHhhhhhhcCChhHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q 021217 263 WALAAALVPAMQKGSETARNLHIALNALNILLFIWQIPTGIDIVFKV 309 (316)
Q Consensus 263 ml~SaAl~p~MqkGr~~aR~LHI~LNilLLlLFlwQaiTG~~IVqK~ 309 (316)
++.-.+..+.|.+.....+.-|+..|...++.|..-.+.|..||.|+
T Consensus 72 ~alc~a~A~~~~~~e~~LylypV~vN~mml~vFG~tL~ag~t~verf 118 (201)
T COG4648 72 IALCLAVASFMLKTEQLLYLYPVVVNAMMLAVFGGTLWAGMTIVERF 118 (201)
T ss_pred HHHHHhhhHHHhhhhhhhhhhHHHHHHHHHHHHhhhHhhchHHHHHH
Confidence 33445567788887888999999999999999999999999999886
No 42
>COG3658 Cytochrome b [Energy production and conversion]
Probab=50.45 E-value=42 Score=31.31 Aligned_cols=78 Identities=23% Similarity=0.219 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhhheeeeeccccchHHHhhhcCCCCCCCCCCCCCCCCChhHHHHHhhHHHHHHHhhhhhh--HhHHhh
Q 021217 144 SLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKELLKGSYR--DRHYNA 221 (316)
Q Consensus 144 ~Lfa~tlyA~yLGwQ~Rr~Rt~g~ei~elkk~~~~~~~~~~g~~~~~~~sp~~~~i~~l~e~RKeLikg~~r--drH~~~ 221 (316)
+.+++++.+.-|+|-+--..+..= ...+|||. +--+.=||++.|+-- .-|.-+
T Consensus 41 Gyav~allalRL~WG~igs~~ARf--------------------~af~pspa-----~a~~~lke~~~gr~~~h~gHNPl 95 (192)
T COG3658 41 GYAVLALLALRLCWGIIGSDTARF--------------------SAFVPSPA-----GAREYLKEGIPGREHIHPGHNPL 95 (192)
T ss_pred HHHHHHHHHHHHHhcccccchhhh--------------------hccCCChH-----HHHHHHHhhccCCccCCCCCCch
Confidence 788888899999998875533321 13556665 334566777775432 568889
Q ss_pred HHHHH-HHHHHHhhhcceeeeecCCC
Q 021217 222 GSILL-GFGVLESVGGGVNTYLRAGK 246 (316)
Q Consensus 222 GsiLL-~L~vlgavgG~~~T~~r~Gk 246 (316)
|.+|+ +++.+.++.|..+-.-++.+
T Consensus 96 GAlmv~Amw~~l~~~v~TG~lar~d~ 121 (192)
T COG3658 96 GALMVVAMWALLLAQVGTGWLARDDN 121 (192)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 99998 77777777777766655533
No 43
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=50.37 E-value=23 Score=29.14 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=24.5
Q ss_pred HHHHHHHHHH-HHHHhhheeeeeccccchHHHhhhc
Q 021217 142 MGSLLVYTLW-AGYLGWQWRRVRTIQTDINELKKQV 176 (316)
Q Consensus 142 M~~Lfa~tly-A~yLGwQ~Rr~Rt~g~ei~elkk~~ 176 (316)
.+.++..+.| ...+||.....++..+.-.||+|++
T Consensus 42 ~~~Lv~fG~Ysl~~lgy~v~tFnDcpeA~~eL~~eI 77 (91)
T PF08285_consen 42 FYALVSFGCYSLFTLGYGVATFNDCPEAAKELQKEI 77 (91)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 4677888888 5679999888876665555555444
No 44
>PRK15028 cytochrome bd-II oxidase subunit 2; Provisional
Probab=49.94 E-value=1.6e+02 Score=29.81 Aligned_cols=126 Identities=12% Similarity=0.033 Sum_probs=74.0
Q ss_pred ccccccceehhhhhHHHHHHHHHHHHHHHHhhheeeeeccccchHHHhhhcCCCCCCCCCCCCCCCCChhHHHHHhhHHH
Q 021217 126 FGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEE 205 (316)
Q Consensus 126 ~g~~egr~~aliHPi~M~~Lfa~tlyA~yLGwQ~Rr~Rt~g~ei~elkk~~~~~~~~~~g~~~~~~~sp~~~~i~~l~e~ 205 (316)
|....+..++-++..+|..|+++-+.+. ++++|..+... .-
T Consensus 75 FP~~Ya~lfS~lYlpl~l~L~~LIlRgv--afEfR~k~~~~-------------------------------------~w 115 (378)
T PRK15028 75 WPRVYAAAFSGFYVAMILVLCSLFFRPL--AFDYRGKIADA-------------------------------------RW 115 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh--hheecccCCCh-------------------------------------HH
Confidence 4445566677788888888888877765 44555221100 11
Q ss_pred HHHHhhhhhhHhHHhhHHHHHHHHHHHhhhcceeeeec--C--------CCc---CcchhHHHHHHHHHHHHHHHHhhhh
Q 021217 206 RKELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLR--A--------GKL---FPGPHLFAGAAITVLWALAAALVPA 272 (316)
Q Consensus 206 RKeLikg~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r--~--------GkL---F~gpHL~aGL~mv~Lml~SaAl~p~ 272 (316)
| +.+|+-+-+||++..+...-++|.++..+-- + |.. +..-=+.+|++.+.+.++--+.--.
T Consensus 116 r------~~Wd~~f~vgS~l~~f~~Gv~~g~~v~G~p~~~d~~~~~~~~G~~~~~l~Pf~ll~Gl~~v~l~~l~Ga~~L~ 189 (378)
T PRK15028 116 R------KMWDAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQ 189 (378)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHcCceecccccccccccccHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 5889999999998877665555444333222 1 221 2334677888888887776665544
Q ss_pred hhc-C--ChhHHHHHHHHHHHHHHHHH
Q 021217 273 MQK-G--SETARNLHIALNALNILLFI 296 (316)
Q Consensus 273 Mqk-G--r~~aR~LHI~LNilLLlLFl 296 (316)
+.- | +.++|.....+.++.+++|+
T Consensus 190 ~KT~g~l~~rar~~a~~~~~~~~~~~~ 216 (378)
T PRK15028 190 LKTVGVIHLRSQLATKRAALLVMLCFL 216 (378)
T ss_pred HHcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 2 55666665544444444333
No 45
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=49.82 E-value=1.2e+02 Score=26.34 Aligned_cols=51 Identities=16% Similarity=0.101 Sum_probs=32.3
Q ss_pred hhhHhHHhhHHHHHHHHHHHhhhcceeeeecC--CC-------cCcchhHHHHHHHHHHHHH
Q 021217 213 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRA--GK-------LFPGPHLFAGAAITVLWAL 265 (316)
Q Consensus 213 ~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~--Gk-------LF~gpHL~aGL~mv~Lml~ 265 (316)
..|--|+.....++++.+.|...+-. .... |. .....|.++|.++++++++
T Consensus 6 ~~R~~HW~~a~~~i~l~~tG~~~~~~--~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~l~l~ 65 (211)
T TIGR02125 6 PVRLFHWVRALAIFVLIVTGFYIAYP--FLSPPSGEAVHFLQGYIRFVHFAAGFVLIAVLLF 65 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC--CcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778998777777777766644311 1110 11 1236799999999988875
No 46
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=49.82 E-value=90 Score=24.39 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHH
Q 021217 280 ARNLHIALNALNILLFIWQIPTGIDI 305 (316)
Q Consensus 280 aR~LHI~LNilLLlLFlwQaiTG~~I 305 (316)
++.+|..+++..+...+.=++||+-+
T Consensus 60 ~~dlH~~~G~~~~~~ll~~a~TG~~~ 85 (88)
T PF13703_consen 60 WFDLHRVLGLWFLPFLLVIALTGLFF 85 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56699999999999999999999743
No 47
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=49.68 E-value=53 Score=25.63 Aligned_cols=80 Identities=20% Similarity=0.169 Sum_probs=47.9
Q ss_pred hhHhHHhhHHHHHHHHHHHhhhcceeeeecC--------CCcCcchhHHHHHHHHHHHHHHHHhh-hhhh-c-CChhHHH
Q 021217 214 YRDRHYNAGSILLGFGVLESVGGGVNTYLRA--------GKLFPGPHLFAGAAITVLWALAAALV-PAMQ-K-GSETARN 282 (316)
Q Consensus 214 ~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~--------GkLF~gpHL~aGL~mv~Lml~SaAl~-p~Mq-k-Gr~~aR~ 282 (316)
...-|..+|.+.+.+.++=.+.=..+.+... ......+-...|.++..++++-+.++ +.+. + +-+.++.
T Consensus 33 ~~~~Hr~lg~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~a~~~l~~l~~tS~~~~R~r~~ye~f~~ 112 (125)
T PF01794_consen 33 LLRFHRWLGRLAFFLALLHGVLYLINWLRFGGWDWQEWFNAWLTGPYNLTGIIALLLLLILAVTSFPWIRRRRNYEIFYY 112 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 3348999999999887776553222222111 11123555567777766666555544 4554 3 4478999
Q ss_pred HHHHHHHHHHH
Q 021217 283 LHIALNALNIL 293 (316)
Q Consensus 283 LHI~LNilLLl 293 (316)
+|...-.+.++
T Consensus 113 ~H~~~~~~~~l 123 (125)
T PF01794_consen 113 LHILFYIAFLL 123 (125)
T ss_pred HHHHHHHHHHH
Confidence 99996665544
No 48
>PF11377 DUF3180: Protein of unknown function (DUF3180); InterPro: IPR021517 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=48.86 E-value=47 Score=28.81 Aligned_cols=27 Identities=30% Similarity=0.284 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhhheeeee
Q 021217 137 VHPIVMGSLLVYTLWAGYLGWQWRRVR 163 (316)
Q Consensus 137 iHPi~M~~Lfa~tlyA~yLGwQ~Rr~R 163 (316)
+-......++++++-..++||+.||++
T Consensus 29 ~p~~~~~~l~~la~~~~~~a~~vr~~~ 55 (138)
T PF11377_consen 29 IPWTAGVTLLVLAAVELWLAWQVRRRI 55 (138)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444477888888899999999886
No 49
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=48.68 E-value=54 Score=30.04 Aligned_cols=86 Identities=17% Similarity=0.108 Sum_probs=59.0
Q ss_pred HhhHHHHHHHHHHHhhhcceeeee-------------------cCCCcCcchhHHHHHHHHHHHHHHHHhhhhhhcCChh
Q 021217 219 YNAGSILLGFGVLESVGGGVNTYL-------------------RAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSET 279 (316)
Q Consensus 219 ~~~GsiLL~L~vlgavgG~~~T~~-------------------r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~MqkGr~~ 279 (316)
|+.|++++...+.-.+-|+.-+.. ++|.+..+-|.++.=.+..++.+=..-+-....-+ .
T Consensus 23 ~~~G~ll~~~~~iqiiTGi~La~~Y~p~~~~A~~Sv~~i~~ev~~G~liR~~H~~gas~~~~~~~lH~~r~~~~gsY~-~ 101 (200)
T cd00284 23 WNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYK-K 101 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c
Confidence 789999988888888888765433 34555678899998888777666443333332111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHH
Q 021217 280 ARNLHIALNALNILLFIWQIPTGIDI 305 (316)
Q Consensus 280 aR~LHI~LNilLLlLFlwQaiTG~~I 305 (316)
.|..-=..+++++++....++||--.
T Consensus 102 pre~~W~~G~~l~~l~~~~af~GY~L 127 (200)
T cd00284 102 PRELTWVIGVILLLLTMATAFMGYVL 127 (200)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccccc
Confidence 45556677888899999999999543
No 50
>PF02322 Cyto_ox_2: Cytochrome oxidase subunit II; InterPro: IPR003317 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=48.54 E-value=2.1e+02 Score=27.90 Aligned_cols=129 Identities=22% Similarity=0.219 Sum_probs=75.3
Q ss_pred ccccccceehhhhhHHHHHHHHHHHHHHHHhhheeeeeccccchHHHhhhcCCCCCCCCCCCCCCCCChhHHHHHhhHHH
Q 021217 126 FGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEE 205 (316)
Q Consensus 126 ~g~~egr~~aliHPi~M~~Lfa~tlyA~yLGwQ~Rr~Rt~g~ei~elkk~~~~~~~~~~g~~~~~~~sp~~~~i~~l~e~ 205 (316)
|....+--++-.+..+|..|+++.+.+...-++-+.. + ...
T Consensus 70 FP~~ya~l~s~lylpl~liL~~li~RgvafefR~~~~---~------------------------------------~~~ 110 (328)
T PF02322_consen 70 FPLAYATLFSGLYLPLFLILLGLILRGVAFEFRHKAD---S------------------------------------PRW 110 (328)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---C------------------------------------hhh
Confidence 4445556677788888888888888877654443311 1 011
Q ss_pred HHHHhhhhhhHhHHhhHHHHHHHHHHHhhhcceeeeecC------CC---cCcchhHHHHHHHHHHHHHHHHhhhhhhc-
Q 021217 206 RKELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRA------GK---LFPGPHLFAGAAITVLWALAAALVPAMQK- 275 (316)
Q Consensus 206 RKeLikg~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~------Gk---LF~gpHL~aGL~mv~Lml~SaAl~p~Mqk- 275 (316)
| ..+|+=+-.||++..+....+++.++.-+--+ |. ++..-=+..|+..+.+.+.-.+.--...-
T Consensus 111 r------~~wd~~~~~gSll~~~~~G~~~g~~~~G~p~~~~~~~~g~~~~~l~pf~ll~Gl~~v~~~~~~GA~~l~~kt~ 184 (328)
T PF02322_consen 111 R------RFWDWVFFIGSLLPPFLLGVALGNLVSGLPIDANGNYTGGFFDLLSPFSLLGGLAVVALFALHGAVFLALKTE 184 (328)
T ss_pred H------HHHHHHHHHhHHHHHHHHHHHHHHHHcCCcccccccccCchHHhccHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2 47899999999998776655554433332222 11 22344456677666665554433333221
Q ss_pred --CChhHHHHHHHHHHHHHHHHHHHh
Q 021217 276 --GSETARNLHIALNALNILLFIWQI 299 (316)
Q Consensus 276 --Gr~~aR~LHI~LNilLLlLFlwQa 299 (316)
-+.++|+.......+.+++++.-+
T Consensus 185 g~l~~rar~~a~~~~~~~~~~~~~~~ 210 (328)
T PF02322_consen 185 GELRERARRWALRLGLAALVLFLAFA 210 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 266777777777777666655443
No 51
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=47.92 E-value=95 Score=24.49 Aligned_cols=49 Identities=16% Similarity=0.038 Sum_probs=27.9
Q ss_pred hhhHhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHH
Q 021217 213 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWAL 265 (316)
Q Consensus 213 ~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~ 265 (316)
..+.+|+..-.+.+.+.+++++.+.++...-. .+++-+.+++.+++-++
T Consensus 13 ~~q~~~~~~~~~~i~~~~~~a~i~~l~~~~~~----~~~~~~~~~~~~~l~~~ 61 (112)
T PF14015_consen 13 RAQRRYRRLRIASIILSVLGAVIPVLASLSGL----GGGSSWLKLVAAILSAL 61 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cchhhHHHHHHHHHHHH
Confidence 56777777777777777777777763333222 23444444444444333
No 52
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=47.69 E-value=1.9e+02 Score=25.40 Aligned_cols=26 Identities=15% Similarity=0.064 Sum_probs=20.1
Q ss_pred hhhHHHH-HHHHHHHHHHHHhhheeee
Q 021217 137 VHPIVMG-SLLVYTLWAGYLGWQWRRV 162 (316)
Q Consensus 137 iHPi~M~-~Lfa~tlyA~yLGwQ~Rr~ 162 (316)
.+|..+. .=++.+.|-.|+||+..|.
T Consensus 67 ~~p~~~~~lk~~Ga~YL~~lg~~~~~s 93 (205)
T PRK10520 67 QSLLAFEVLKWAGAAYLIWLGIQQWRA 93 (205)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3466665 6778889999999998765
No 53
>KOG1563 consensus Mitochondrial protein Surfeit 1/SURF1/SHY1, required for expression of cytochrome oxidase [Energy production and conversion]
Probab=47.02 E-value=8.8 Score=37.67 Aligned_cols=41 Identities=27% Similarity=0.374 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHh-hheeeeeccccchHHHhhhcCCCC
Q 021217 140 IVMGSLLVYTLWAGYLG-WQWRRVRTIQTDINELKKQVKPTP 180 (316)
Q Consensus 140 i~M~~Lfa~tlyA~yLG-wQ~Rr~Rt~g~ei~elkk~~~~~~ 180 (316)
.+.|.++++-+-+.+|| ||.+|...--+-|++||++|--.|
T Consensus 58 ~l~~ll~liPittFgLGtWQvkRlkWK~~lI~~l~~rL~~~p 99 (288)
T KOG1563|consen 58 FLAWLLLLIPITTFGLGTWQVKRLKWKLELIASLKQRLEQEP 99 (288)
T ss_pred hHHHHHHHhhhheeeccceeehhHHHHHHHHHHHHhhhcCCC
Confidence 34568899999999999 999999888888999999987543
No 54
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=45.32 E-value=1.3e+02 Score=27.17 Aligned_cols=25 Identities=20% Similarity=0.111 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhch
Q 021217 278 ETARNLHIALNALNILLFIWQIPTG 302 (316)
Q Consensus 278 ~~aR~LHI~LNilLLlLFlwQaiTG 302 (316)
.++|.+|.....++++.++++++-.
T Consensus 147 ~~~~~~H~~~a~~~i~~iivHiy~a 171 (211)
T PRK10639 147 RFALMLHSFAAVALIVVIMVHIYAA 171 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999988765
No 55
>PRK13685 hypothetical protein; Provisional
Probab=45.29 E-value=48 Score=31.61 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=12.3
Q ss_pred ehhhhhHHHHHHHHHHHH
Q 021217 134 VALVHPIVMGSLLVYTLW 151 (316)
Q Consensus 134 ~aliHPi~M~~Lfa~tly 151 (316)
++|.||...+.++...++
T Consensus 4 ~~F~~P~~l~ll~~~~~~ 21 (326)
T PRK13685 4 SGFAHPWFFLFLLVVAAL 21 (326)
T ss_pred cchhhHHHHHHHHHHHHH
Confidence 579999887765554333
No 56
>CHL00070 petB cytochrome b6
Probab=45.29 E-value=34 Score=31.95 Aligned_cols=84 Identities=19% Similarity=0.161 Sum_probs=59.8
Q ss_pred HhhHHHHHHHHHHHhhhcceeee-------------------ecCCCcCcchhHHHHHHHHHHHHHHHHhhhhhhcCChh
Q 021217 219 YNAGSILLGFGVLESVGGGVNTY-------------------LRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSET 279 (316)
Q Consensus 219 ~~~GsiLL~L~vlgavgG~~~T~-------------------~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~MqkGr~~ 279 (316)
|+.|++++...+.-.+-|+.-+. .++|-+..+-|.++.=.+..++.+=..-+-....-+ .
T Consensus 34 ~~~G~ll~~~~~iqiiTGi~L~~~Y~p~~~~Af~Sv~~I~~ev~~Gwl~R~~H~~gas~~~~~~~lH~~r~~~~gsYk-~ 112 (215)
T CHL00070 34 YCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFK-K 112 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C
Confidence 78999998888888888876543 234445568899999999888887554444433222 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchH
Q 021217 280 ARNLHIALNALNILLFIWQIPTGI 303 (316)
Q Consensus 280 aR~LHI~LNilLLlLFlwQaiTG~ 303 (316)
-|..-=..+++++++....++||-
T Consensus 113 pre~~W~~Gv~l~~l~m~~af~GY 136 (215)
T CHL00070 113 PRELTWVTGVVLAVLTVSFGVTGY 136 (215)
T ss_pred CcccCcHHHHHHHHHHHHHHHccc
Confidence 255556778888888889999885
No 57
>PRK03735 cytochrome b6; Provisional
Probab=44.93 E-value=28 Score=32.65 Aligned_cols=84 Identities=19% Similarity=0.162 Sum_probs=59.4
Q ss_pred HhhHHHHHHHHHHHhhhcceeee-------------------ecCCCcCcchhHHHHHHHHHHHHHHHHhhhhhhcCChh
Q 021217 219 YNAGSILLGFGVLESVGGGVNTY-------------------LRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSET 279 (316)
Q Consensus 219 ~~~GsiLL~L~vlgavgG~~~T~-------------------~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~MqkGr~~ 279 (316)
|+.|+++....+.-.+-|+.-+. .+.|.+..+-|.+++=.+..++.+=..-+-....-+ .
T Consensus 42 ~~~G~l~~~~~~iqi~TGi~L~~~Y~P~~~~A~~Sv~~I~~ev~~GwliR~~H~~gas~~~~~~~lH~~r~~~~gsYk-~ 120 (223)
T PRK03735 42 YCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYK-K 120 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHcccccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHc-C
Confidence 78899988777777777765443 245556679999999999998887655554443212 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchH
Q 021217 280 ARNLHIALNALNILLFIWQIPTGI 303 (316)
Q Consensus 280 aR~LHI~LNilLLlLFlwQaiTG~ 303 (316)
-|..-=..+++++++....++||-
T Consensus 121 pre~~W~~Gv~l~~l~~~~af~GY 144 (223)
T PRK03735 121 PRELNWVVGVLIFFVTVGLGFTGY 144 (223)
T ss_pred CCCceeHHHHHHHHHHHHHHhccc
Confidence 244445678888888888899985
No 58
>TIGR02805 exbB2 tonB-system energizer ExbB, group 2. Members of this protein family appear to be the ExbB protein of an ExbBD proton-transporting membrane complex that, by means of TonB, energizes transport by TonB-dependent receptors. Note that this family represents one of at least two distinct groups TolQ homologs designated ExbB - see also TIGR02797. Each group associates with a distinct group of ExbD proteins, and a single species may have two ExbB/ExbD/TonB systems.
Probab=44.89 E-value=89 Score=27.82 Aligned_cols=51 Identities=25% Similarity=0.155 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHhhhcceeeeecCCCcC-cchhHHHHHHHHHHHHHHHHhh
Q 021217 220 NAGSILLGFGVLESVGGGVNTYLRAGKLF-PGPHLFAGAAITVLWALAAALV 270 (316)
Q Consensus 220 ~~GsiLL~L~vlgavgG~~~T~~r~GkLF-~gpHL~aGL~mv~Lml~SaAl~ 270 (316)
.+|+..=.+|++|.|.||+.|....|.-. ..+-..++=.-.+|+..++.+.
T Consensus 60 ti~s~APllGLLGTV~GmI~~F~~lg~~g~~~~~~la~GIs~ALitTa~GL~ 111 (138)
T TIGR02805 60 IIGSNAPYIGLLGTVIGIMVTFYQMGHGGGIDPSVIMLGLSLALKATALGLL 111 (138)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHhHHHHHHHHHHHHHH
Confidence 45677778999999999999988876543 3344444444444444444433
No 59
>PRK11513 cytochrome b561; Provisional
Probab=44.51 E-value=1.6e+02 Score=26.00 Aligned_cols=87 Identities=18% Similarity=0.106 Sum_probs=45.7
Q ss_pred hhHhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhhh-----hhcC-Chh----HHHH
Q 021217 214 YRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPA-----MQKG-SET----ARNL 283 (316)
Q Consensus 214 ~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~-----MqkG-r~~----aR~L 283 (316)
.|-.|+-...++++.+..+-..+.... .....+...|...|+.+.+|+++=....-. ...+ ..| ++..
T Consensus 9 ~~~lHWl~a~li~~~~~~~~~~~~~~~--~~~~~~~~~H~s~G~~vl~L~v~Rl~~r~~~~~P~~~~~~~~~~~~~A~~~ 86 (176)
T PRK11513 9 QIGIHWLVFLLVIVAYCAMEFRGFFPR--SDRPLINMIHVSCGISILVLMVVRLLLRLKYPTPPIVPKPKPMMTGLAHLG 86 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHH
Confidence 567888665555544444332222111 111234578999999999998875443221 1111 223 3446
Q ss_pred HHHHHHHHHHHHHHHhhchHHHH
Q 021217 284 HIALNALNILLFIWQIPTGIDIV 306 (316)
Q Consensus 284 HI~LNilLLlLFlwQaiTG~~IV 306 (316)
|..+- ++.+.+.+||+-..
T Consensus 87 H~~LY----~lli~~plsG~~~~ 105 (176)
T PRK11513 87 HLVIY----LLFIALPVIGLVMM 105 (176)
T ss_pred HHHHH----HHHHHHHHHHHHHH
Confidence 65444 44445666777543
No 60
>PRK01622 OxaA-like protein precursor; Validated
Probab=44.49 E-value=1.4e+02 Score=28.13 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhhchHHH
Q 021217 289 ALNILLFIWQIPTGIDI 305 (316)
Q Consensus 289 ilLLlLFlwQaiTG~~I 305 (316)
.++++.|.++..+|+.+
T Consensus 215 pi~~~~~~~~~Psgl~l 231 (256)
T PRK01622 215 PAMILFMSFAAPSALVL 231 (256)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456677777777654
No 61
>PRK08990 flagellar motor protein PomA; Reviewed
Probab=43.13 E-value=98 Score=29.44 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHh-------hhhhhcCChhHHHHHHHHHHHHH
Q 021217 220 NAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAAL-------VPAMQKGSETARNLHIALNALNI 292 (316)
Q Consensus 220 ~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl-------~p~MqkGr~~aR~LHI~LNilLL 292 (316)
.+|.+.=++|++|++.|++.+..+-++ |-..++-..++|+...+.+ .|.-.|=+.+.+.-...-.++.-
T Consensus 145 ~~a~~aP~lGllGTVlGlI~~~~~l~~----p~~lg~gIa~ALitT~yGl~~An~v~~P~a~kl~~~~~~e~~~~~~i~e 220 (254)
T PRK08990 145 AFGDVAPAMGMIGTLIGLVAMLSNMDD----PKSIGPAMAVALLTTLYGAVLANMVAIPIADKLSLRMGEEMLNRNLIMD 220 (254)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhccC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777789999999999999888864 4444444444444443333 35433322333333344444444
Q ss_pred HHHHHH
Q 021217 293 LLFIWQ 298 (316)
Q Consensus 293 lLFlwQ 298 (316)
.+...|
T Consensus 221 gi~ai~ 226 (254)
T PRK08990 221 AVLAIQ 226 (254)
T ss_pred HHHHHh
Confidence 444433
No 62
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=43.03 E-value=33 Score=22.87 Aligned_cols=27 Identities=26% Similarity=0.229 Sum_probs=21.3
Q ss_pred hhhHhHHhhHHHHHHHHHHHhhhccee
Q 021217 213 SYRDRHYNAGSILLGFGVLESVGGGVN 239 (316)
Q Consensus 213 ~~rdrH~~~GsiLL~L~vlgavgG~~~ 239 (316)
..|+-|...|.+...+.++.++-|++-
T Consensus 4 ~~~~~H~~~g~~~~~~ll~~~lTG~~l 30 (34)
T PF13172_consen 4 FWRKIHRWLGLIAAIFLLLLALTGALL 30 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888777777654
No 63
>PRK09609 hypothetical protein; Provisional
Probab=42.93 E-value=24 Score=35.03 Aligned_cols=98 Identities=20% Similarity=0.272 Sum_probs=53.5
Q ss_pred hccccCchhhhhccCccccccccee-hhhhhHHHHHHHHHHHHHHHHhhhee---------ee--eccccchHHHhhhcC
Q 021217 110 LPFLLDTKDALAVNGEFGILEGRSV-ALVHPIVMGSLLVYTLWAGYLGWQWR---------RV--RTIQTDINELKKQVK 177 (316)
Q Consensus 110 ~p~~~~~~~a~a~~g~~g~~egr~~-aliHPi~M~~Lfa~tlyA~yLGwQ~R---------r~--Rt~g~ei~elkk~~~ 177 (316)
.-+++++-.+..+|+-.+++.+=.. .-.||..+.+..+.++-+++.||-.. +. ..-+++|...|+|..
T Consensus 50 ~G~LFGPv~G~ivG~lsDLLs~li~pG~ffPgFTLsa~l~GlI~Glf~~~~fk~~~~~f~~~~~~~~~~~~i~~~~~~~~ 129 (312)
T PRK09609 50 TGFIFGPIVGFFTGLLSDLISFLFVPGVYHPYYTLAAMVYGFIPGIVGWFFFKFGKKFFGKESRIKRYDNKIFKQKEQYD 129 (312)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555444432222 25699999877777777776654321 11 123567888888864
Q ss_pred CCCCCCCCCCCCCCCChhHHHHHhhHHHHHHHhh
Q 021217 178 PTPVTPDGAPAETAPSPVEIKIQQLTEERKELLK 211 (316)
Q Consensus 178 ~~~~~~~g~~~~~~~sp~~~~i~~l~e~RKeLik 211 (316)
-+...++- +- ..-.+++|.-++++||.+-+
T Consensus 130 ~~~~~~~~---~~-~~~~~~ki~~~~~k~~~~~~ 159 (312)
T PRK09609 130 FALENPNS---EK-IQKIKQKIILLEKKKKKLEK 159 (312)
T ss_pred HHhcCCCc---HH-HHHHHHHHHHHHHHHHHHHh
Confidence 43211220 11 23345667777777777654
No 64
>PF02665 Nitrate_red_gam: Nitrate reductase gamma subunit; InterPro: IPR003816 The nitrate reductase enzyme (1.7.99.4 from EC) is composed of three subunits; an alpha, a beta and two gamma. It is the second nitrate reductase enzyme which it can substitute for the NRA enzyme in Escherichia coli allowing it to use nitrate as an electron acceptor during anoerobic respiration []. Nitrate reductase gamma subunit resembles cytochrome b and transfers electrons from quinones to the beta subunit [].; GO: 0008940 nitrate reductase activity, 0055114 oxidation-reduction process, 0009325 nitrate reductase complex; PDB: 1Y5L_C 3IR5_C 1Y5I_C 1Y5N_C 1Y4Z_C 3IR6_C 3IR7_C 1SIW_C 3EGW_C 1Q16_C.
Probab=42.63 E-value=2.6e+02 Score=25.72 Aligned_cols=41 Identities=22% Similarity=0.294 Sum_probs=24.4
Q ss_pred HHHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHHHHHHhhchH
Q 021217 261 VLWALAAALVPAMQKGSETARNLHIALNALNILLFIWQIPTGI 303 (316)
Q Consensus 261 ~Lml~SaAl~p~MqkGr~~aR~LHI~LNilLLlLFlwQaiTG~ 303 (316)
+++.+...+...+- ++..|..=..--.+++++.+.++.||.
T Consensus 99 ~lvGl~~Ll~RR~~--~~~vr~~s~~~D~~~L~lLl~i~~tG~ 139 (222)
T PF02665_consen 99 ALVGLLILLVRRLF--DPRVRAISTPSDYFVLLLLLAIVLTGL 139 (222)
T ss_dssp HHHHHHHHHHHHHH--SHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 33444444445443 355666555666677888888888885
No 65
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=42.21 E-value=68 Score=28.09 Aligned_cols=37 Identities=22% Similarity=0.055 Sum_probs=17.9
Q ss_pred HHHHhhhhhhcCChhHHHHHHHHHHHHHHHHHHHhhch
Q 021217 265 LAAALVPAMQKGSETARNLHIALNALNILLFIWQIPTG 302 (316)
Q Consensus 265 ~SaAl~p~MqkGr~~aR~LHI~LNilLLlLFlwQaiTG 302 (316)
+.|. .|..-|+++++..+=+.+.........+.+.+|
T Consensus 106 ~~Ys-~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (257)
T PF01040_consen 106 LLYS-PPLRLKRRPLWGELVVALVFGLLILLGAYAAGG 142 (257)
T ss_pred HHHh-hhhhhcceeccchhhHHHhhhHhhhhhhhhcCC
Confidence 4455 333445455555555555444444444444433
No 66
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=41.15 E-value=2e+02 Score=24.99 Aligned_cols=27 Identities=7% Similarity=-0.022 Sum_probs=21.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhchH
Q 021217 277 SETARNLHIALNALNILLFIWQIPTGI 303 (316)
Q Consensus 277 r~~aR~LHI~LNilLLlLFlwQaiTG~ 303 (316)
...+|.+|..+-.+++++++.+++-.+
T Consensus 162 ~~~~~~iH~~~a~~l~~~i~~Hi~~a~ 188 (211)
T TIGR02125 162 LANVRFIHHLGMWAFVIFVPVHVYMAV 188 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344789999888888888888877653
No 67
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=40.78 E-value=2.4e+02 Score=24.91 Aligned_cols=85 Identities=15% Similarity=0.080 Sum_probs=41.3
Q ss_pred HhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHHH
Q 021217 216 DRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHIALNALNILLF 295 (316)
Q Consensus 216 drH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~MqkGr~~aR~LHI~LNilLLlLF 295 (316)
.+....|-+++. ++.+.|.+=....+|.-+..-|=..-- .+..++.++.+--...+ .|.++.-..++++.+ ++
T Consensus 126 ~~~~~~gf~~lt---i~l~~G~~wa~~~wG~~w~wDpk~~~s-li~Wl~y~~~lh~r~~~--~~~gr~~a~~~i~gf-~~ 198 (214)
T PF01578_consen 126 YRLILIGFILLT---IGLITGAIWAKDSWGSYWSWDPKEVWS-LITWLVYGAYLHLRSWK--GWRGRRAAYLSIIGF-LL 198 (214)
T ss_pred HHHHHHHHHHHH---HHHccHHHHHHHhccchhHHhHHHHHH-HHHHHHHHHHHHHHHhh--chhhHHHHHHHHHHH-HH
Confidence 445555555444 455666665577777777434443322 33333344444444333 333333334455443 34
Q ss_pred HHHhhchHHHHH
Q 021217 296 IWQIPTGIDIVF 307 (316)
Q Consensus 296 lwQaiTG~~IVq 307 (316)
+.-++.|+..+.
T Consensus 199 ~~~~~~gv~~~~ 210 (214)
T PF01578_consen 199 LLLSYFGVNLLL 210 (214)
T ss_pred HHHHHHHHHHhc
Confidence 455556665543
No 68
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=40.55 E-value=61 Score=28.95 Aligned_cols=58 Identities=17% Similarity=0.006 Sum_probs=45.9
Q ss_pred hhhHhHHhhHHHHHHHHHHHhhhcceeeeecC-----CCcCcchhHHHHHHHHHHHHHHHHhh
Q 021217 213 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRA-----GKLFPGPHLFAGAAITVLWALAAALV 270 (316)
Q Consensus 213 ~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~-----GkLF~gpHL~aGL~mv~Lml~SaAl~ 270 (316)
.+..-|-.+|.+.+.+..+=.+.|...=++.. .+-...-|-+.|+.+-.|.+.++.++
T Consensus 80 ~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~~~p~H~~~G~~i~~Lai~t~~lG 142 (153)
T cd08765 80 NMYSLHSWVGLAAVILYPLQLVLGISVYLLPVAPVRLRAALMPLHVYSGLFIFGTVIATALMG 142 (153)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999999998876543332 23346789999999998888877665
No 69
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=40.40 E-value=79 Score=24.70 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=23.3
Q ss_pred hhHhHHhhHHHHHHHHHHHhhhcceee
Q 021217 214 YRDRHYNAGSILLGFGVLESVGGGVNT 240 (316)
Q Consensus 214 ~rdrH~~~GsiLL~L~vlgavgG~~~T 240 (316)
..|-|...|...+.+.++.++-|++.+
T Consensus 60 ~~dlH~~~G~~~~~~ll~~a~TG~~~~ 86 (88)
T PF13703_consen 60 WFDLHRVLGLWFLPFLLVIALTGLFFS 86 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 568999999999999999988887654
No 70
>COG1290 QcrB Cytochrome b subunit of the bc complex [Energy production and conversion]
Probab=38.80 E-value=1.1e+02 Score=31.00 Aligned_cols=84 Identities=23% Similarity=0.161 Sum_probs=61.1
Q ss_pred HhhHHHHHHHHHHHhhhcceeeeecC-------------------CCcCcchhHHHHHHHHHHHHHHHHhhhhhhcCChh
Q 021217 219 YNAGSILLGFGVLESVGGGVNTYLRA-------------------GKLFPGPHLFAGAAITVLWALAAALVPAMQKGSET 279 (316)
Q Consensus 219 ~~~GsiLL~L~vlgavgG~~~T~~r~-------------------GkLF~gpHL~aGL~mv~Lml~SaAl~p~MqkGr~~ 279 (316)
|..|++++..++...+-|+.-+.... |-++...|.|++-.|..++.+-..-.-....-+ .
T Consensus 39 y~~G~l~~~~~v~~v~tGi~L~~~Y~p~~~~a~~S~~~i~~~V~~Gw~lr~~H~~~A~~m~~~~~iHm~r~~~~Gayk-k 117 (381)
T COG1290 39 YPLGGLLLFLFVIQVITGIFLALYYVPSAGLAFPSVPFIMREVPYGWLLRYMHLWGASLMFALVYLHMFRGFFYGAYK-K 117 (381)
T ss_pred hhhHHHHHHHHHHHHHHHHHheeEecCCCccccccchhhhccCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccceec-C
Confidence 55788887777666666665544332 335678999999999999888666555443323 5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchH
Q 021217 280 ARNLHIALNALNILLFIWQIPTGI 303 (316)
Q Consensus 280 aR~LHI~LNilLLlLFlwQaiTG~ 303 (316)
.|.+=-+..++++++...++++|-
T Consensus 118 PRel~Wi~Gvll~ll~~~~a~~GY 141 (381)
T COG1290 118 PRELNWILGVLLFLLTMATAFFGY 141 (381)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhc
Confidence 788888899999999999998884
No 71
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=38.58 E-value=78 Score=23.37 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=18.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhh
Q 021217 277 SETARNLHIALNALNILLFIWQIP 300 (316)
Q Consensus 277 r~~aR~LHI~LNilLLlLFlwQai 300 (316)
+..||.+|.......+++...+..
T Consensus 38 ~~~~~~iH~~~g~~~~~l~~~Hl~ 61 (64)
T PF14358_consen 38 KHFWRNIHLWAGYLFLILIILHLG 61 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888887777776654
No 72
>PF00032 Cytochrom_B_C: Cytochrome b(C-terminal)/b6/petD; InterPro: IPR005798 In the mitochondrion of eukaryotes and in aerobic prokaryotes, cytochrome b is a component of respiratory chain complex III (1.10.2.2 from EC) - also known as the bc1 complex or ubiquinol-cytochrome c reductase. In plant chloroplasts and cyanobacteria, there is a analogous protein, cytochrome b6, a component of the plastoquinone-plastocyanin reductase (1.10.99.1 from EC), also known as the b6f complex. Cytochrome b/b6 [, ] is an integral membrane protein of approximately 400 amino acid residues that probably has 8 transmembrane segments. In plants and cyanobacteria, cytochrome b6 consists of two subunits encoded by the petB and petD genes. The sequence of petB is colinear with the N-terminal part of mitochondrial cytochrome b, while petD corresponds to the C-terminal part. Cytochrome b/b6 non-covalently binds two haem groups, known as b562 and b566. Four conserved histidine residues are postulated to be the ligands of the iron atoms of these two haem groups. Apart from regions around some of the histidine haem ligands, there are a few conserved regions in the sequence of b/b6. The best conserved of these regions includes an invariant P-E-W triplet which lies in the loop that separates the fifth and sixth transmembrane segments. It seems to be important for electron transfer at the ubiquinone redox site - called Qz or Qo (where o stands for outside) - located on the outer side of the membrane. This entry is the C terminus of these proteins.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0016020 membrane; PDB: 2E76_B 2D2C_B 1VF5_B 2E74_B 2E75_B 2ZT9_B 2YIU_D 1Q90_D 1ZRT_C 1PPJ_P ....
Probab=36.15 E-value=1.3e+02 Score=24.24 Aligned_cols=53 Identities=23% Similarity=0.180 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhcC---ChhHHHHHHHHHHHHHHHHHHHhhchHH
Q 021217 252 HLFAGAAITVLWALAAALVPAMQKG---SETARNLHIALNALNILLFIWQIPTGID 304 (316)
Q Consensus 252 HL~aGL~mv~Lml~SaAl~p~MqkG---r~~aR~LHI~LNilLLlLFlwQaiTG~~ 304 (316)
.-..|+.+.++.++...+.|.++++ +..-|..+.....+.+..|.+=.+-|.+
T Consensus 29 ~k~~Gv~~~~~~~~~l~~lP~ld~~~~~~~~~rp~~~~~~~~~v~~~~~L~~lG~~ 84 (102)
T PF00032_consen 29 NKLGGVIAMGLSILILFLLPFLDRSPVRSPRFRPIFRAAFWLFVISFIVLTWLGSQ 84 (102)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHTSCSSSSCGGSHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cccceeeecchhhhhHHHHHhhcchhhhhhhhcccccchhhhHHhHHHHHHHHhcC
Confidence 3458888888888999999999864 3445677776666666666666665543
No 73
>TIGR01583 formate-DH-gamm formate dehydrogenase, gamma subunit. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model.
Probab=35.96 E-value=2.1e+02 Score=25.57 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhchH
Q 021217 278 ETARNLHIALNALNILLFIWQIPTGI 303 (316)
Q Consensus 278 ~~aR~LHI~LNilLLlLFlwQaiTG~ 303 (316)
.++|.+|...-.+++++++++++-..
T Consensus 145 ~~~~~~H~~~a~l~~~~vi~Hiy~a~ 170 (204)
T TIGR01583 145 RISALIHNFSAIILAVGFIVHIYMAV 170 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788998888888888888877653
No 74
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=34.03 E-value=1.9e+02 Score=24.03 Aligned_cols=54 Identities=22% Similarity=0.196 Sum_probs=41.8
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhcCCh--hHHHHHHHHHHHHHHHHHHHhhchH
Q 021217 250 GPHLFAGAAITVLWALAAALVPAMQKGSE--TARNLHIALNALNILLFIWQIPTGI 303 (316)
Q Consensus 250 gpHL~aGL~mv~Lml~SaAl~p~MqkGr~--~aR~LHI~LNilLLlLFlwQaiTG~ 303 (316)
..|..+=.+-.+++++++.++-...+..+ ..-++|..+..+++.+...|.+.|+
T Consensus 45 r~~~~~q~~~~~l~~~g~~~g~~~~~~~p~lyp~n~H~k~g~il~~l~~~q~~~gv 100 (105)
T PF10348_consen 45 RWHLPVQTVFLVLMILGLFLGSVYNGSTPDLYPNNAHGKMGWILFVLMIVQVILGV 100 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34888777777888888887766544332 2577999999999999999999885
No 75
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=33.75 E-value=1.7e+02 Score=24.55 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=23.8
Q ss_pred HhhHHHHHHHHHHHhhhcceeeeecCCCc
Q 021217 219 YNAGSILLGFGVLESVGGGVNTYLRAGKL 247 (316)
Q Consensus 219 ~~~GsiLL~L~vlgavgG~~~T~~r~GkL 247 (316)
..++++.-.+|++|++.|++.+..+.+.-
T Consensus 59 ~~i~~~aP~lGLlGTv~Gmi~~f~~l~~~ 87 (139)
T PF01618_consen 59 RTIASIAPLLGLLGTVIGMIEAFQALAET 87 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35677778999999999999999887643
No 76
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=33.39 E-value=65 Score=31.08 Aligned_cols=47 Identities=15% Similarity=0.163 Sum_probs=35.6
Q ss_pred hHHHHHhhHHHHHHHhhhhhhHhHHhhHHHHHHHHHHHhhhcceeeeecCCC
Q 021217 195 VEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGK 246 (316)
Q Consensus 195 ~~~~i~~l~e~RKeLikg~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~Gk 246 (316)
.|.+|+..+++.++-. .-=..+|...=++|++|++.|++.+..+-++
T Consensus 133 Le~ei~~~~~r~~~~~-----~v~~~~g~~APafGmiGTviGLI~mL~~L~d 179 (271)
T PRK06926 133 MMAEIAAMEERHRKGR-----RIFEKAGEYAPAWGMIGTLVGLVLMLKNLND 179 (271)
T ss_pred HHHHHHHHHHHHHhHH-----HHHHHHHHHchHHHHHHHHHHHHHHHHhcCC
Confidence 5566666666666422 2334689999999999999999999998876
No 77
>PTZ00127 cytochrome c oxidase assembly protein; Provisional
Probab=33.39 E-value=1.2e+02 Score=30.51 Aligned_cols=86 Identities=17% Similarity=0.159 Sum_probs=47.3
Q ss_pred HHHHhhhcceeeeecCC-------C---cC-cchhHHHHHHHHHHHHHHHHhh-----hhhhcCChhHHHHHHHHHHHHH
Q 021217 229 GVLESVGGGVNTYLRAG-------K---LF-PGPHLFAGAAITVLWALAAALV-----PAMQKGSETARNLHIALNALNI 292 (316)
Q Consensus 229 ~vlgavgG~~~T~~r~G-------k---LF-~gpHL~aGL~mv~Lml~SaAl~-----p~MqkGr~~aR~LHI~LNilLL 292 (316)
++=|.+|+.+++..-.. . -+ ...|+..|+++.++++.-+... +... ..+..+.+ ..+..+.+
T Consensus 187 ~~Qg~lG~~~V~sgL~~~~~~~~~p~Vs~~rla~Hll~al~i~~~l~~~~~~l~~~~~~~~~-~~~~~~~l-r~l~~~~~ 264 (403)
T PTZ00127 187 GAQGFVGWWMVKSGLDEPLTENKKPRVSPYRLAAHLFNAFVIYSLLLWNGLTLILFALPSIA-PFPELLKM-RLLARGLF 264 (403)
T ss_pred HHHHHHHHHHHHhcccccccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-ccccchhH-HHHHHHHH
Confidence 45567777777755432 0 11 3689999998877766655322 1111 01111221 12334556
Q ss_pred HHHHHHhhchHHHHHHH--hhccCCC
Q 021217 293 LLFIWQIPTGIDIVFKV--LEFTKWP 316 (316)
Q Consensus 293 lLFlwQaiTG~~IVqK~--l~ft~wp 316 (316)
++-..|+++|--+-..+ +.+++||
T Consensus 265 ~l~~lqI~lGa~Vag~~AGlac~~wP 290 (403)
T PTZ00127 265 ALVFLTAMSGAFVAGNDAGLAYNTWP 290 (403)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCC
Confidence 66678999987666543 4556666
No 78
>PRK10171 hydrogenase 1 b-type cytochrome subunit; Provisional
Probab=32.29 E-value=4e+02 Score=24.48 Aligned_cols=25 Identities=12% Similarity=-0.145 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhch
Q 021217 278 ETARNLHIALNALNILLFIWQIPTG 302 (316)
Q Consensus 278 ~~aR~LHI~LNilLLlLFlwQaiTG 302 (316)
..+|.+|...-.+++++.+.+++--
T Consensus 178 ~~~~~~H~~~~~~l~~~v~~Hi~~~ 202 (235)
T PRK10171 178 MDIHSWHRLGMWLIGAFVIGHVYMA 202 (235)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999998888888888887654
No 79
>PRK09877 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional
Probab=32.25 E-value=3.2e+02 Score=23.36 Aligned_cols=90 Identities=9% Similarity=-0.125 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhhhhhc-----------CChhHHHHHHHHHHHH
Q 021217 223 SILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQK-----------GSETARNLHIALNALN 291 (316)
Q Consensus 223 siLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~Mqk-----------Gr~~aR~LHI~LNilL 291 (316)
.++++.+++..+.+.+.-|.-+ .-..++--.+...++-+..++++.+-.-.. ..+..|.+.+..+++.
T Consensus 10 ~~~l~~m~~~v~~~Vv~Ry~f~-~~~~w~eEla~~l~v~~~flGa~~~~~~~~Hi~Vd~l~~~lp~~~~~~l~~l~~l~~ 88 (157)
T PRK09877 10 AINIAVLSCIVFINIILRYGFQ-TSILSVDELSRYLFVWLTFIGAIVAFMDNAHVQVTFLVEKLSPANQRRVSLLTHSLI 88 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeeehHHHhCCHHHHHHHHHHHHHHH
Confidence 3444444444444555444222 223445667777777777777766543221 1344445667677677
Q ss_pred HHHHHHHhhchHHHHHHHhhcc
Q 021217 292 ILLFIWQIPTGIDIVFKVLEFT 313 (316)
Q Consensus 292 LlLFlwQaiTG~~IVqK~l~ft 313 (316)
++.++.-++.|++.+++-++.+
T Consensus 89 ~~f~~~~~~~~~~~~~~~~~~~ 110 (157)
T PRK09877 89 LLLCGALAWGATLKTIQDWSDY 110 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 7666677777888887655544
No 80
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=32.18 E-value=3.2e+02 Score=23.24 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=16.3
Q ss_pred hHHHH--HHHHHHHHHHHHhhheeeeecccc
Q 021217 139 PIVMG--SLLVYTLWAGYLGWQWRRVRTIQT 167 (316)
Q Consensus 139 Pi~M~--~Lfa~tlyA~yLGwQ~Rr~Rt~g~ 167 (316)
|++|. .-..+..|..-++.-.-|.|...+
T Consensus 5 P~fLlsaig~ll~~~tnRl~ri~dR~R~L~~ 35 (130)
T PF11026_consen 5 PAFLLSAIGLLLLVLTNRLARIVDRIRQLHD 35 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666 333445556666665555555544
No 81
>PF07584 BatA: Aerotolerance regulator N-terminal; InterPro: IPR024163 The Batl operon appears to be important in pathogenicity and aerotolerance. BatA ensures bacterial survival in the early stages of the infection process, when the infected sites are aerobic, and is produced under conditions of oxidative stress []. Proteins produced by the Batl operon share a highly-conserved sequence at their N terminus and the full length proteins carry multiple membrane-spanning domains []. This entry represents the conserved N-terminal domain, which is also found in some uncharacterised proteins.
Probab=32.02 E-value=2.3e+02 Score=21.64 Aligned_cols=23 Identities=17% Similarity=0.103 Sum_probs=16.7
Q ss_pred ehhhhhHHHHHHHHHHH-HHHHHh
Q 021217 134 VALVHPIVMGSLLVYTL-WAGYLG 156 (316)
Q Consensus 134 ~aliHPi~M~~Lfa~tl-yA~yLG 156 (316)
+.|.||...+.+++..+ +..+.-
T Consensus 2 ~~F~~P~~L~~Llllp~~i~~~~~ 25 (77)
T PF07584_consen 2 FSFLNPWYLWLLLLLPLPIIIHYF 25 (77)
T ss_pred cchHhHHHHHHHHHHHHHHHHHHH
Confidence 36889999998888777 444443
No 82
>cd02862 NorE_like NorE_like subfamily of heme-copper oxidase subunit III. Heme-copper oxidases include cytochrome c and ubiquinol oxidases. Alcaligenes faecalis norE is found in a gene cluster containing norCB. norCB encodes the cytochrome c and cytochrome b subunits of nitric oxide reductase (NOR). Based on this and on its similarity to subunit III of cytochrome c oxidase (CcO) and ubiquinol oxidase, NorE has been speculated to be a subunit of NOR.
Probab=31.93 E-value=1.2e+02 Score=26.64 Aligned_cols=57 Identities=19% Similarity=0.152 Sum_probs=33.7
Q ss_pred HhHHhhHHHHHHHHHHHhhhcceeeeec-CC---CcC----cchhHHHHHHHHHHHHHHHHhhhh
Q 021217 216 DRHYNAGSILLGFGVLESVGGGVNTYLR-AG---KLF----PGPHLFAGAAITVLWALAAALVPA 272 (316)
Q Consensus 216 drH~~~GsiLL~L~vlgavgG~~~T~~r-~G---kLF----~gpHL~aGL~mv~Lml~SaAl~p~ 272 (316)
+.|-.+|..+....-....++...+|+. +. ..+ ..++...+..-+.+++.|-.+...
T Consensus 6 ~~~~~~g~~lfi~se~~~F~~l~~~y~~~~~~~~~~~p~~~~~~~~~~~~lnT~iLl~Ss~~~~~ 70 (186)
T cd02862 6 RLPGKLGMWVFILSELLAFGALFIAYAVYRALYPELFAAGSAHLDLLLGALNTLVLLTSSFTVAL 70 (186)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCccCCccHHHHHHHHHHHHHHHHHH
Confidence 4455688888776666677777777762 11 112 123456677777777776444443
No 83
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=31.82 E-value=2.7e+02 Score=23.82 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=20.0
Q ss_pred hhhHHHH-HHHHHHHHHHHHhhheeee
Q 021217 137 VHPIVMG-SLLVYTLWAGYLGWQWRRV 162 (316)
Q Consensus 137 iHPi~M~-~Lfa~tlyA~yLGwQ~Rr~ 162 (316)
.+|..+. .-++.+.|-.|+||+..|.
T Consensus 49 ~~~~~~~~l~~~Ga~yLl~lg~~~~~~ 75 (185)
T TIGR00949 49 KSVILFTVIKWLGGAYLIYLGIKMLRK 75 (185)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3576555 7788899999999987754
No 84
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=31.67 E-value=3.9e+02 Score=24.07 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhhheeeee
Q 021217 144 SLLVYTLWAGYLGWQWRRVR 163 (316)
Q Consensus 144 ~Lfa~tlyA~yLGwQ~Rr~R 163 (316)
.-++.+.|=.|+|||.-|.+
T Consensus 75 lk~~GaaYL~ylg~~~~ra~ 94 (208)
T COG1280 75 LKLAGAAYLLYLGWKALRAG 94 (208)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 45667788999999955443
No 85
>PF09946 DUF2178: Predicted membrane protein (DUF2178); InterPro: IPR019235 This entry, found in various hypothetical bacterial and archaeal proteins, has no known function, but contains several predicted transmembrane helices.
Probab=31.51 E-value=2.8e+02 Score=23.33 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=15.4
Q ss_pred HHHHHHHhhhhhhHhHHhhHHH
Q 021217 203 TEERKELLKGSYRDRHYNAGSI 224 (316)
Q Consensus 203 ~e~RKeLikg~~rdrH~~~Gsi 224 (316)
++||.+.|..+--.+=.+.-.+
T Consensus 53 eDER~~~I~ekAs~~Tl~V~~i 74 (111)
T PF09946_consen 53 EDERTERISEKASRRTLQVFII 74 (111)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 6899999887766665554443
No 86
>PRK15003 cytochrome d ubiquinol oxidase subunit 2; Provisional
Probab=31.14 E-value=3.1e+02 Score=27.92 Aligned_cols=64 Identities=13% Similarity=0.141 Sum_probs=35.9
Q ss_pred cccchhhhhhccccCchh-hhhccCcc------c-ccccceehhhhhHHHH-HHHHHHHHHHHHhhheeeeecc
Q 021217 101 AVLPVTTITLPFLLDTKD-ALAVNGEF------G-ILEGRSVALVHPIVMG-SLLVYTLWAGYLGWQWRRVRTI 165 (316)
Q Consensus 101 ~~~~~~~~~~p~~~~~~~-a~a~~g~~------g-~~egr~~aliHPi~M~-~Lfa~tlyA~yLGwQ~Rr~Rt~ 165 (316)
.+...++++.||+++.-- +...|=.+ | -..|--..|.+|.... +++..++|+... --|-..||.
T Consensus 121 ~~f~igSll~~f~~Gv~lg~~v~G~p~~~d~~~~~~~~g~~~~~l~Pfsll~Gl~~v~~~~~~G-A~~L~~KT~ 193 (379)
T PRK15003 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQG-ATYLQMRTV 193 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccchHhhccHHHHHHHHHHHHHHHHHH-HHHHHHHcc
Confidence 345666778888877632 33333222 2 2345556788898777 777777775433 334333343
No 87
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=31.09 E-value=52 Score=28.61 Aligned_cols=56 Identities=18% Similarity=0.121 Sum_probs=30.7
Q ss_pred hHHhhHHHHHHHHHHHhhhcceeeeecCCC-cCcchhHHHHHHHHH--HHHHHHHhhhhh
Q 021217 217 RHYNAGSILLGFGVLESVGGGVNTYLRAGK-LFPGPHLFAGAAITV--LWALAAALVPAM 273 (316)
Q Consensus 217 rH~~~GsiLL~L~vlgavgG~~~T~~r~Gk-LF~gpHL~aGL~mv~--Lml~SaAl~p~M 273 (316)
.|.-++.+.+.++++..++|++. +.-.+. +....-...|+++++ +++++..+.-.+
T Consensus 3 ~~~i~~i~~iilgilli~~gI~~-Lv~~~~~l~~~~s~~lg~~~lAlg~vL~~~g~~~~~ 61 (191)
T PF04156_consen 3 KQRIISIILIILGILLIASGIAA-LVLFISGLGALISFILGIALLALGVVLLSLGLLCLL 61 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777888888866666655 333332 444445555555554 444444444333
No 88
>PRK10599 calcium/sodium:proton antiporter; Provisional
Probab=30.93 E-value=3.7e+02 Score=27.24 Aligned_cols=69 Identities=10% Similarity=0.115 Sum_probs=36.5
Q ss_pred HHHHHHH-HHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHH--hhhhhhcCChhHHHHHHHHHHHH
Q 021217 222 GSILLGF-GVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAA--LVPAMQKGSETARNLHIALNALN 291 (316)
Q Consensus 222 GsiLL~L-~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaA--l~p~MqkGr~~aR~LHI~LNilL 291 (316)
+.+++.+ .+.....-++.++-..=+-+.-|..+.|+.+ +++..+.= ..-...+.|+--|.+-+.++..+
T Consensus 225 ~~L~v~lv~Vv~lAe~lv~sIe~~v~~~Glp~afiGvII-aiv~~apE~~tAV~aA~kNkmq~slnialGSsL 296 (366)
T PRK10599 225 IWLIIHLIAVIAVTKMNASPLETLLTSMNAPVAFTGFLV-ALLILSPEGLGALKAVLNNQVQRAMNLFFGSVL 296 (366)
T ss_pred HHHHHHHHHHHHHHHHhHhhHHHHHHhcCCCHHHHHHHH-HHHHcchhHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 4444433 3333333444444444344678999999876 44443321 22222335666777777777654
No 89
>PLN02810 carbon-monoxide oxygenase
Probab=30.58 E-value=1.9e+02 Score=27.85 Aligned_cols=86 Identities=15% Similarity=0.107 Sum_probs=57.9
Q ss_pred hhhHhHHhhHHHHHHHHHHHhhhcceeeeecCCC-----cCcchhHHHHHHHHHHHHHHHHhhhh-----hh-cCChhHH
Q 021217 213 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGK-----LFPGPHLFAGAAITVLWALAAALVPA-----MQ-KGSETAR 281 (316)
Q Consensus 213 ~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~Gk-----LF~gpHL~aGL~mv~Lml~SaAl~p~-----Mq-kGr~~aR 281 (316)
.+-..|-.+|...+.+..+=.+.|++.=++.... ..-..|.+.|+.+-.|.+.++.++-. .+ ++-.+..
T Consensus 112 nlySLHSWlGl~tv~Lf~lQw~~Gf~~Fl~P~~~~~~R~~~lP~Hv~~Gl~if~LAiata~lGi~EKl~Fl~~~~~~~~~ 191 (231)
T PLN02810 112 NLYSLHSWLGIGIISLYGIQWIYGFIVFFFPGGSTNLRSGSLPWHVLFGLFVYILAVGNAALGFLEKLTFLESGGLDKYG 191 (231)
T ss_pred ceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC
Confidence 5678999999999999999999998664444433 22478999999999888887766532 11 1222222
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021217 282 NLHIALNALNILLFIWQ 298 (316)
Q Consensus 282 ~LHI~LNilLLlLFlwQ 298 (316)
.-=...|++-+++.+.-
T Consensus 192 ~Ea~lvN~~Glliv~fg 208 (231)
T PLN02810 192 SEALLVNFTAIITILYG 208 (231)
T ss_pred chhhhHHHHHHHHHHHH
Confidence 33346677666655543
No 90
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=30.25 E-value=2.5e+02 Score=25.94 Aligned_cols=58 Identities=22% Similarity=0.095 Sum_probs=45.9
Q ss_pred hhhHhHHhhHHHHHHHHHHHhhhcceeeeecCCC-----cCcchhHHHHHHHHHHHHHHHHhh
Q 021217 213 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGK-----LFPGPHLFAGAAITVLWALAAALV 270 (316)
Q Consensus 213 ~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~Gk-----LF~gpHL~aGL~mv~Lml~SaAl~ 270 (316)
.+-..|-.+|.+.+.+..+-.+.|...=+....+ -.-..|.+.|+.+-.|-+.++.++
T Consensus 103 nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p~~~~~~ra~~~p~H~~~G~~if~Laiat~~lG 165 (179)
T cd08762 103 NLYSLHSWVGICTVALFTCQWVMGFTSFLLPWAPMWLRALVKPIHVFFGAMILVLSIASCISG 165 (179)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4557899999999999999999998875544433 224789999999998888877665
No 91
>PRK09109 motC flagellar motor protein; Reviewed
Probab=30.12 E-value=1.7e+02 Score=27.57 Aligned_cols=40 Identities=13% Similarity=0.221 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHH
Q 021217 220 NAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLW 263 (316)
Q Consensus 220 ~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lm 263 (316)
.+|.+.=++|++|++.|++.+..+-++ |-..++-.-++|+
T Consensus 148 ~~a~~AP~lGllGTVlGlI~~f~~l~~----p~~lg~gIa~ALv 187 (246)
T PRK09109 148 SMGGYAPTIGIIGAVMGLIHVMENLAD----PSQLGSGIAVAFV 187 (246)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHH
Confidence 467777799999999999999988753 4444444444443
No 92
>PRK12482 flagellar motor protein MotA; Provisional
Probab=29.86 E-value=1.4e+02 Score=29.07 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=35.1
Q ss_pred hHHHHHhhHHHHHHHhhhhhhHhHHhhHHHHHHHHHHHhhhcceeeeecCCC
Q 021217 195 VEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGK 246 (316)
Q Consensus 195 ~~~~i~~l~e~RKeLikg~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~Gk 246 (316)
.|.+|+..+++.++- .+-=..+|..+=++|++|++.|++.+..+-++
T Consensus 147 Le~eie~~~~r~~~~-----a~v~~~~a~~aPa~GiiGtvlGLI~mL~~L~d 193 (287)
T PRK12482 147 LDQELDAVEEELLQP-----SRSLQRIAEAMPGFGICAAVLGIIITMQSIDG 193 (287)
T ss_pred HHHHHHHHHHHHHhH-----HHHHHHHHHHchHHHHHHHHHHHHHHHHhcCC
Confidence 455666666666642 22334688999999999999999999988865
No 93
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=29.22 E-value=5.4e+02 Score=25.90 Aligned_cols=34 Identities=9% Similarity=0.150 Sum_probs=25.2
Q ss_pred HHhhhhhhcCChhHHHHHHHHHHHHHHHHHHHhh
Q 021217 267 AALVPAMQKGSETARNLHIALNALNILLFIWQIP 300 (316)
Q Consensus 267 aAl~p~MqkGr~~aR~LHI~LNilLLlLFlwQai 300 (316)
-.+--.+.+....||.+....-++.+.+++|+..
T Consensus 281 ~iid~~l~~~~~~~~~i~~~~~~~a~~~v~~~~~ 314 (344)
T PF04123_consen 281 KIIDEYLRRDFRLWRYINAPFFVIAIGLVLYGFS 314 (344)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556666999999999999888888754
No 94
>PRK15006 thiosulfate reductase cytochrome B subunit; Provisional
Probab=29.10 E-value=5e+02 Score=24.60 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=23.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhchH
Q 021217 277 SETARNLHIALNALNILLFIWQIPTGI 303 (316)
Q Consensus 277 r~~aR~LHI~LNilLLlLFlwQaiTG~ 303 (316)
..++|.+|-.+-.++++.++.+++-+.
T Consensus 216 ~~~~~~iH~~~a~lli~fiivHIYl~~ 242 (261)
T PRK15006 216 RYWLLQLHFALAFISLFFIFGHLYLCT 242 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999998764
No 95
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.09 E-value=26 Score=25.71 Aligned_cols=14 Identities=14% Similarity=0.088 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhh
Q 021217 144 SLLVYTLWAGYLGW 157 (316)
Q Consensus 144 ~Lfa~tlyA~yLGw 157 (316)
+.|+.++-.+++-.
T Consensus 26 ~~f~~G~llg~l~~ 39 (68)
T PF06305_consen 26 IAFLLGALLGWLLS 39 (68)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555444433
No 96
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=28.95 E-value=2.7e+02 Score=26.90 Aligned_cols=51 Identities=22% Similarity=0.228 Sum_probs=30.9
Q ss_pred HhhHHHHHHHHHHHhhhcceeeee-cCCCcCcchhHHHHH---------HHHHHHHHHHHhhhhh
Q 021217 219 YNAGSILLGFGVLESVGGGVNTYL-RAGKLFPGPHLFAGA---------AITVLWALAAALVPAM 273 (316)
Q Consensus 219 ~~~GsiLL~L~vlgavgG~~~T~~-r~GkLF~gpHL~aGL---------~mv~Lml~SaAl~p~M 273 (316)
.-+|++++.|+++-.+ .|++ ..++-|+-+|++-.+ .+..||.++|.+.+.+
T Consensus 152 ~gi~aml~Vf~LF~lv----mt~g~d~m~fl~v~~ly~~ia~~ik~se~~~~~lwyi~Y~vPY~~ 212 (230)
T PF03904_consen 152 KGIGAMLFVFMLFALV----MTIGSDFMDFLHVDHLYKAIASKIKASESFWTYLWYIAYLVPYIF 212 (230)
T ss_pred HhHHHHHHHHHHHHHH----HHhcccchhhhhHHHHHHHHHHHHhhhHhHHHHHHHHHHhhHHHH
Confidence 3455555555444333 2222 235667889998655 4678888888777655
No 97
>COG1291 MotA Flagellar motor component [Cell motility and secretion]
Probab=28.90 E-value=1.2e+02 Score=29.62 Aligned_cols=103 Identities=17% Similarity=0.112 Sum_probs=57.1
Q ss_pred hhHHHHHhhHHHHHHHhhhhhhHhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHH--HHHHHHhhh
Q 021217 194 PVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVL--WALAAALVP 271 (316)
Q Consensus 194 p~~~~i~~l~e~RKeLikg~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~L--ml~SaAl~p 271 (316)
-.|.+|++++|+-+ ..+.-=-.+|-.+=++|+.|++.|.+.+..+-++--.=-|..++..++-+ +.+++++.-
T Consensus 128 ~me~Ei~~~ee~~~-----~~a~~~~~~g~~aPa~GivgaV~GlI~~l~~l~~p~~LG~~iA~Alv~T~~Gi~~ay~~~~ 202 (266)
T COG1291 128 LMEEEIETMEERHE-----KPAHAFTTAGDYAPAFGIVGAVMGLIHALGNLDDPAELGALIAAALVGTLYGIFLAYGLFG 202 (266)
T ss_pred HHHHHHHHHHHHHh-----hHHHHHHHHHhhCchhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667766655544 34455567899999999999999999999888772221222222222222 233444444
Q ss_pred hhhcC-ChhHHHHHHHHHHHHHHHHHHHhhc
Q 021217 272 AMQKG-SETARNLHIALNALNILLFIWQIPT 301 (316)
Q Consensus 272 ~MqkG-r~~aR~LHI~LNilLLlLFlwQaiT 301 (316)
-+... +...-.-+-.-.++.-.+...|.=-
T Consensus 203 P~a~kLk~~~~~e~~~~~~i~e~ll~i~~G~ 233 (266)
T COG1291 203 PLANKLKQKSDEEVKLKEIIIEGLLAIQNGE 233 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34321 1111113444556666666666433
No 98
>PRK15003 cytochrome d ubiquinol oxidase subunit 2; Provisional
Probab=28.60 E-value=4.7e+02 Score=26.67 Aligned_cols=73 Identities=16% Similarity=0.084 Sum_probs=45.6
Q ss_pred hhhHhHHhhHHHHHHHHHHHhhhcceeeee---------cC-CCc---CcchhHHHHHHHHHHHHHHHHhhhhhhc-C--
Q 021217 213 SYRDRHYNAGSILLGFGVLESVGGGVNTYL---------RA-GKL---FPGPHLFAGAAITVLWALAAALVPAMQK-G-- 276 (316)
Q Consensus 213 ~~rdrH~~~GsiLL~L~vlgavgG~~~T~~---------r~-GkL---F~gpHL~aGL~mv~Lml~SaAl~p~Mqk-G-- 276 (316)
+.+|.=+-+||++..+...-++|.++..+- ++ |.. +..-=+.+|++.+++.++-.+.--.+.- |
T Consensus 117 ~~Wd~~f~igSll~~f~~Gv~lg~~v~G~p~~~d~~~~~~~~g~~~~~l~Pfsll~Gl~~v~~~~~~GA~~L~~KT~g~L 196 (379)
T PRK15003 117 NMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGEL 196 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccchHhhccHHHHHHHHHHHHHHHHHHHHHHHHHcchHH
Confidence 478999999999987766555554443331 11 222 2345678899998888887776655543 2
Q ss_pred ChhHHHHHH
Q 021217 277 SETARNLHI 285 (316)
Q Consensus 277 r~~aR~LHI 285 (316)
+.++|+.-.
T Consensus 197 ~~rar~~a~ 205 (379)
T PRK15003 197 HLRTRATAQ 205 (379)
T ss_pred HHHHHHHHH
Confidence 445555444
No 99
>COG3295 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.09 E-value=47 Score=31.58 Aligned_cols=33 Identities=24% Similarity=0.224 Sum_probs=24.1
Q ss_pred hhhhcCChhHHHHHHHHHHHHHHHHHHHhhchH
Q 021217 271 PAMQKGSETARNLHIALNALNILLFIWQIPTGI 303 (316)
Q Consensus 271 p~MqkGr~~aR~LHI~LNilLLlLFlwQaiTG~ 303 (316)
..+++.|.|.|.+|......-+++-+.=++||+
T Consensus 16 ~~~~rrnkWLR~lH~W~~~~slv~~LlFaltGi 48 (213)
T COG3295 16 RAEHRRNKWLRKLHQWSGAWSLVGMLLFALTGI 48 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhce
Confidence 345667999999999877666555555567775
No 100
>TIGR00351 narI respiratory nitrate reductase, gamma subunit. Involved in anerobic respiration the gene product catalyzes the reaction (reduced acceptor + NO3- = Acceptor + nitrite). Another possible role_id for this gene product is in nitrogen fixation (Role_id:160).
Probab=27.91 E-value=1.8e+02 Score=27.07 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhchHHH
Q 021217 278 ETARNLHIALNALNILLFIWQIPTGIDI 305 (316)
Q Consensus 278 ~~aR~LHI~LNilLLlLFlwQaiTG~~I 305 (316)
+..|..-..--.+++++.+.++.||.-.
T Consensus 115 ~~vr~~s~~~D~~~L~lLl~i~~tGl~~ 142 (224)
T TIGR00351 115 PRVRATSTGADILILSLLLIQCLLGLLT 142 (224)
T ss_pred CcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 4445544556778888888999999644
No 101
>cd00290 cytochrome_b_C Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Probab=27.09 E-value=81 Score=27.28 Aligned_cols=54 Identities=19% Similarity=0.051 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCh--hHHHHHHHHHHHHHHHHHHHhhchHHHHH
Q 021217 254 FAGAAITVLWALAAALVPAMQKGSE--TARNLHIALNALNILLFIWQIPTGIDIVF 307 (316)
Q Consensus 254 ~aGL~mv~Lml~SaAl~p~MqkGr~--~aR~LHI~LNilLLlLFlwQaiTG~~IVq 307 (316)
..|+.+.++.++...+.|.+++++. .-|..|-.+-.+.++.|..=.+.|.+-|+
T Consensus 82 ~~Gv~~~~~~i~~l~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~lG~~~~~ 137 (147)
T cd00290 82 LLGVLAMAASILSLFLVPFLENSNKRSQFRPLRPTAFWVFLAGTLVLGWLGIQPVE 137 (147)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCcCCCCCcHHHHHhHHHHHHHHHHHHHcCCCcc
Confidence 6788888888888899999987533 24667766655656566665666654443
No 102
>COG1422 Predicted membrane protein [Function unknown]
Probab=27.08 E-value=3e+02 Score=26.12 Aligned_cols=130 Identities=15% Similarity=0.136 Sum_probs=67.1
Q ss_pred eehhhhhHHHHHH--HHHHHH---HHHHhhheeeeeccccchHHHhhhcCCCCCCCCCCCCCCCCChhHHHHHhhHHHHH
Q 021217 133 SVALVHPIVMGSL--LVYTLW---AGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERK 207 (316)
Q Consensus 133 ~~aliHPi~M~~L--fa~tly---A~yLGwQ~Rr~Rt~g~ei~elkk~~~~~~~~~~g~~~~~~~sp~~~~i~~l~e~RK 207 (316)
..+..||.+-..+ ...++| .-|+-.-|-|-+..+++..|++|...++ ..+..+.++++|.|+|.
T Consensus 40 ~i~~~~p~lvilV~avi~gl~~~i~~~~liD~ekm~~~qk~m~efq~e~~eA-----------~~~~d~~~lkkLq~~qm 108 (201)
T COG1422 40 LLSPLPPHLVILVAAVITGLYITILQKLLIDQEKMKELQKMMKEFQKEFREA-----------QESGDMKKLKKLQEKQM 108 (201)
T ss_pred hccccccHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-----------HHhCCHHHHHHHHHHHH
Confidence 4455788654321 222333 3333333444444555666666665554 22334677888888876
Q ss_pred H-------HhhhhhhHhHHhhHHHHH-HHHHHHhhhcceee-------eecCCC-cCcchh-----HHHHHHHHHHHHHH
Q 021217 208 E-------LLKGSYRDRHYNAGSILL-GFGVLESVGGGVNT-------YLRAGK-LFPGPH-----LFAGAAITVLWALA 266 (316)
Q Consensus 208 e-------Likg~~rdrH~~~GsiLL-~L~vlgavgG~~~T-------~~r~Gk-LF~gpH-----L~aGL~mv~Lml~S 266 (316)
| +.|-.||.-=+.+=.+.+ +.|+---+++.... +.-.+. +++..| .|.|+=+++=+++|
T Consensus 109 em~~~Q~elmk~qfkPM~~~~v~tI~~F~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gWi~WYfLcS~~vs 188 (201)
T COG1422 109 EMMDDQRELMKMQFKPMLYISVLTIPFFAWLRWFVGTGGYLVSEPNMALPTLFHILYHTAVFGDFLGWIGWYFLCSFVVS 188 (201)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHccCcccccCccchhHHhhhhhhhccccccchHHHHHHHHHHHHHH
Confidence 5 556666766666554444 44444444433222 111122 224555 56677776666666
Q ss_pred HHhhhhh
Q 021217 267 AALVPAM 273 (316)
Q Consensus 267 aAl~p~M 273 (316)
..+.+.+
T Consensus 189 ~ilrk~l 195 (201)
T COG1422 189 QILRKVL 195 (201)
T ss_pred HHHHHHH
Confidence 6655544
No 103
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=27.06 E-value=43 Score=27.83 Aligned_cols=33 Identities=12% Similarity=0.243 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhhh-eeeeeccccchHHHhhhc
Q 021217 144 SLLVYTLWAGYLGWQ-WRRVRTIQTDINELKKQV 176 (316)
Q Consensus 144 ~Lfa~tlyA~yLGwQ-~Rr~Rt~g~ei~elkk~~ 176 (316)
+++++..|..|.|=+ |++.+...+++.++++++
T Consensus 10 ~ll~~l~y~l~~g~~G~~~~~~l~~q~~~~~~e~ 43 (105)
T PRK00888 10 ALLVWLQYSLWFGKNGILDYWRVNDQVAAQQQTN 43 (105)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH
Confidence 444555555544332 223445566666655554
No 104
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=26.45 E-value=3.9e+02 Score=22.43 Aligned_cols=33 Identities=24% Similarity=0.211 Sum_probs=22.3
Q ss_pred hhhhhhHhHHhhHHHHHHHHHHHhhhcceeeee
Q 021217 210 LKGSYRDRHYNAGSILLGFGVLESVGGGVNTYL 242 (316)
Q Consensus 210 ikg~~rdrH~~~GsiLL~L~vlgavgG~~~T~~ 242 (316)
+..-.++++.-+++++++-.+...+.|...++.
T Consensus 45 ~~~l~~~~~~~l~t~~~~~~~~~~~~~~l~~~~ 77 (183)
T PF01595_consen 45 LLKLLERPERLLSTILLGNTLSNVLAGVLATVL 77 (183)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555667777788877777777777666665
No 105
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=26.40 E-value=1.8e+02 Score=30.42 Aligned_cols=56 Identities=13% Similarity=0.145 Sum_probs=35.3
Q ss_pred ecCCCcCcchh--HHHHHHH-HHHHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHHHHH
Q 021217 242 LRAGKLFPGPH--LFAGAAI-TVLWALAAALVPAMQKGSETARNLHIALNALNILLFIW 297 (316)
Q Consensus 242 ~r~GkLF~gpH--L~aGL~m-v~Lml~SaAl~p~MqkGr~~aR~LHI~LNilLLlLFlw 297 (316)
...|+.+.|.= +..|+++ ++++++++.....+.+.+.|++.+=....+++++.-+|
T Consensus 319 a~tg~~~~g~~~l~~~gLG~~~Plll~~~~~~~~lpk~g~wm~~~k~~~G~~ll~~~~~ 377 (571)
T PRK00293 319 AQSGDLLLGGLTLYLLALGMGLPLILITTFGNKLLPKSGPWMNQVKTAFGFVLLALPVF 377 (571)
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHH
Confidence 33455443222 4556666 66777777766556666788888777777777766655
No 106
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=26.20 E-value=74 Score=20.98 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=14.6
Q ss_pred hhHhHHhhHHHHHHHHHHHhhhcc
Q 021217 214 YRDRHYNAGSILLGFGVLESVGGG 237 (316)
Q Consensus 214 ~rdrH~~~GsiLL~L~vlgavgG~ 237 (316)
++|.|...+-+...+++..++-|.
T Consensus 1 ~~~LH~w~~~i~al~~lv~~iTGl 24 (27)
T PF03929_consen 1 FNDLHKWFGDIFALFMLVFAITGL 24 (27)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666554
No 107
>PF13346 ABC2_membrane_5: ABC-2 family transporter protein
Probab=26.06 E-value=3.9e+02 Score=22.35 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=37.1
Q ss_pred HHHHHhhhhhhHhHHhhHHHHHHHHHHHhhhc-ceeeeecCCCcCcchhHHH-HHHHHHHHHHHHHhhhhhhc-CChhHH
Q 021217 205 ERKELLKGSYRDRHYNAGSILLGFGVLESVGG-GVNTYLRAGKLFPGPHLFA-GAAITVLWALAAALVPAMQK-GSETAR 281 (316)
Q Consensus 205 ~RKeLikg~~rdrH~~~GsiLL~L~vlgavgG-~~~T~~r~GkLF~gpHL~a-GL~mv~Lml~SaAl~p~Mqk-Gr~~aR 281 (316)
.|||.++++ |-.+.++..++.+....+ .+...+.. ......+... .......++.....-|...+ |.+..|
T Consensus 74 sr~~iV~ak-----yl~~~i~~~~~~l~~~i~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~i~lp~~~~~g~~~~~ 147 (206)
T PF13346_consen 74 SRKEIVLAK-----YLFSLIIILIGSLISLIIAFISNLISG-NMSFFEVILIILFGFILALIFYSIFLPLYYKFGYKKGR 147 (206)
T ss_pred CHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 488877665 444544444433333332 22223333 2333333332 22223333444555566666 667788
Q ss_pred HHHHHHHHH
Q 021217 282 NLHIALNAL 290 (316)
Q Consensus 282 ~LHI~LNil 290 (316)
.+=...-.+
T Consensus 148 ~~~~~~~~~ 156 (206)
T PF13346_consen 148 VIMIIIFIL 156 (206)
T ss_pred HHHHHHHHH
Confidence 744444333
No 108
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=26.02 E-value=2.7e+02 Score=26.76 Aligned_cols=40 Identities=15% Similarity=0.009 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHHHH
Q 021217 257 AAITVLWALAAALVPAMQKGSETARNLHIALNALNILLFI 296 (316)
Q Consensus 257 L~mv~Lml~SaAl~p~MqkGr~~aR~LHI~LNilLLlLFl 296 (316)
..-.+|++.|.-..-..-++.++.+.+=..+..+++.++.
T Consensus 88 ~fF~GLIlgSip~l~k~~~~~~~~~~~~~~~g~~i~~~~~ 127 (257)
T PF04018_consen 88 SFFFGLILGSIPFLYKEIKKFSPKSIIFFLLGAIIALLLS 127 (257)
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHH
Confidence 3444555544333222222234444444444444444433
No 109
>COG5395 Predicted membrane protein [Function unknown]
Probab=26.01 E-value=2.4e+02 Score=24.99 Aligned_cols=53 Identities=17% Similarity=0.007 Sum_probs=45.1
Q ss_pred HhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHH
Q 021217 216 DRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAA 268 (316)
Q Consensus 216 drH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaA 268 (316)
..|..+|.+-+++|..-++.+...--+|----|..-|++.++.+.+|+-.-++
T Consensus 38 ~lHr~LGrvWv~lM~atavSs~FI~ei~l~g~FSpIHLLSi~~i~g~~~aV~a 90 (131)
T COG5395 38 TLHRLLGRVWVALMGATAVSSLFIHEINLHGGFSPIHLLSIFTIIGLPRAVYA 90 (131)
T ss_pred HHHHHHHHHHHHHHHHHhhhhheeeeeeeccCcChHHHHHHHHHHhhHHHHHH
Confidence 78999999999999999999998888874445788999999999998865444
No 110
>PRK08124 flagellar motor protein MotA; Validated
Probab=25.58 E-value=4.1e+02 Score=25.29 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHhhhcceeeeecCCC
Q 021217 220 NAGSILLGFGVLESVGGGVNTYLRAGK 246 (316)
Q Consensus 220 ~~GsiLL~L~vlgavgG~~~T~~r~Gk 246 (316)
.+|.+.=++|++|++.|++.+..+-++
T Consensus 149 ~ia~~AP~lGllGTVlGlI~~f~~l~~ 175 (263)
T PRK08124 149 QAGTYAPTLGVLGAVIGLIAALGNLSD 175 (263)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhccC
Confidence 456667789999999999999988765
No 111
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=25.43 E-value=2.2e+02 Score=26.35 Aligned_cols=35 Identities=26% Similarity=0.287 Sum_probs=31.7
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhhhcCChhHHHHHH
Q 021217 249 PGPHLFAGAAITVLWALAAALVPAMQKGSETARNLHI 285 (316)
Q Consensus 249 ~gpHL~aGL~mv~Lml~SaAl~p~MqkGr~~aR~LHI 285 (316)
--|=...|++.++..++++.++|.+ |+..||..|-
T Consensus 74 lDP~~~~g~~t~a~g~lG~L~GP~~--G~~vf~l~~r 108 (173)
T PF08566_consen 74 LDPFMVYGLATLACGALGWLVGPSL--GNQVFRLLNR 108 (173)
T ss_pred cCHHHHHHHHHHHHHHHHHHhcchH--HHHHHHHHhH
Confidence 6899999999999999999999999 4688888885
No 112
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=25.28 E-value=4e+02 Score=25.73 Aligned_cols=142 Identities=21% Similarity=0.287 Sum_probs=77.5
Q ss_pred hhhccccCchhhhhccCcccccccceehhhhhHHHHHHHHHHHHHHHHhhheeeeeccccchHHHhhh--cCCCCCCCCC
Q 021217 108 ITLPFLLDTKDALAVNGEFGILEGRSVALVHPIVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQ--VKPTPVTPDG 185 (316)
Q Consensus 108 ~~~p~~~~~~~a~a~~g~~g~~egr~~aliHPi~M~~Lfa~tlyA~yLGwQ~Rr~Rt~g~ei~elkk~--~~~~~~~~~g 185 (316)
++.|++.+ .|.+ |++.|+..+. .|.++....+|+.--.-+..-+|+-.+--.||-.. +... .+|
T Consensus 27 l~yPl~~G----~AIn---~ll~g~~~~~----~~~~~~~l~~~~igaaRR~~DTRvf~rIy~~la~~vi~~qr---~~~ 92 (237)
T PF13748_consen 27 LLYPLFIG----FAIN---ALLNGDVWQA----LMYAALVLLMWAIGAARRIYDTRVFSRIYAELAVPVILSQR---QQG 92 (237)
T ss_pred HHHHHHHH----HHHH---HHHcccHHHH----HHHHHHHHHHHHHhhhhHHHhhHHHHHHHHHHhHHHHHHHH---HhC
Confidence 46777764 5666 7888886544 55566666677666666666666666544443322 1110 011
Q ss_pred CCCCCCCChhHHHHHhhHHHHHHHhhhhhhHhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHH
Q 021217 186 APAETAPSPVEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWAL 265 (316)
Q Consensus 186 ~~~~~~~sp~~~~i~~l~e~RKeLikg~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~ 265 (316)
.+. .+|+.--+-=+|++ .|=+.|.=. +..-+...+|+++.- -.-|+|.|++..+++++
T Consensus 93 ----~~~----S~i~ARv~lsRE~V--dFfE~~lP~----lits~vsivga~vmL--------l~~e~~~g~~~l~~l~~ 150 (237)
T PF13748_consen 93 ----LSV----STIAARVALSREFV--DFFEQHLPT----LITSVVSIVGAAVML--------LVFEFWLGLACLLILAL 150 (237)
T ss_pred ----CCh----hHHHHHHHHHHHHH--HHHHHHhHH----HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 111 12333333344554 355666521 122222233332221 23589999999999999
Q ss_pred HHHhhhhhhcCChhHHHHHHHHH
Q 021217 266 AAALVPAMQKGSETARNLHIALN 288 (316)
Q Consensus 266 SaAl~p~MqkGr~~aR~LHI~LN 288 (316)
.+.+.|...+.+. ++|..+|
T Consensus 151 ~~~i~~~f~~~~~---~L~~~LN 170 (237)
T PF13748_consen 151 FLLILPRFARRNY---RLYRRLN 170 (237)
T ss_pred HHHHHHHHHHHHH---HHHHHHh
Confidence 9999998865322 3455554
No 113
>PRK10720 uracil transporter; Provisional
Probab=24.54 E-value=7.4e+02 Score=24.99 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=17.4
Q ss_pred cCcccccccceehhhhhHHHH
Q 021217 123 NGEFGILEGRSVALVHPIVMG 143 (316)
Q Consensus 123 ~g~~g~~egr~~aliHPi~M~ 143 (316)
|+.+.+.+|-|++++=|..+.
T Consensus 61 g~rlP~~~G~sfa~i~~~~~~ 81 (428)
T PRK10720 61 KGKIPAYLGSSFAFISPVLLL 81 (428)
T ss_pred cCccceEEeCcHHHHHHHHHH
Confidence 568899999999998777654
No 114
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=24.40 E-value=1.7e+02 Score=26.00 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=13.1
Q ss_pred hhhHHHHHHHHH-HHHHHHHhhheeeee
Q 021217 137 VHPIVMGSLLVY-TLWAGYLGWQWRRVR 163 (316)
Q Consensus 137 iHPi~M~~Lfa~-tlyA~yLGwQ~Rr~R 163 (316)
.|+.....++++ ++++.|+..+++..+
T Consensus 30 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 57 (199)
T PF10112_consen 30 DHSFLLSLLIGAVAFAVVYLFGKRRQRR 57 (199)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccccch
Confidence 344444533333 334556665555543
No 115
>PF05425 CopD: Copper resistance protein D; InterPro: IPR008457 Copper sequestering activity displayed by some bacteria is determined by copper-binding protein products of the copper resistance operon (cop). CopD, together with CopC, perform copper uptake into the cytoplasm [].; GO: 0016021 integral to membrane
Probab=24.02 E-value=3.6e+02 Score=21.46 Aligned_cols=30 Identities=30% Similarity=0.265 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhhcceeeeec--CCCcCcchh
Q 021217 223 SILLGFGVLESVGGGVNTYLR--AGKLFPGPH 252 (316)
Q Consensus 223 siLL~L~vlgavgG~~~T~~r--~GkLF~gpH 252 (316)
.+...-++...+.|.++++.+ .+.+|.+++
T Consensus 9 ~~a~~av~~l~~TG~~~a~~~~~~~~l~~t~y 40 (105)
T PF05425_consen 9 WIAWAAVAVLVVTGLVMAWLRLGFDALFTTPY 40 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchhhccChh
Confidence 334444455556677777766 556665443
No 116
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=23.43 E-value=5.1e+02 Score=25.92 Aligned_cols=59 Identities=20% Similarity=0.368 Sum_probs=32.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhh-hhc----CChhHHHHHHHHHHHHHHHHHHHhhch-HHHHHHHhh
Q 021217 248 FPGPHLFAGAAITVLWALAAALVPA-MQK----GSETARNLHIALNALNILLFIWQIPTG-IDIVFKVLE 311 (316)
Q Consensus 248 F~gpHL~aGL~mv~Lml~SaAl~p~-Mqk----Gr~~aR~LHI~LNilLLlLFlwQaiTG-~~IVqK~l~ 311 (316)
|...|+..|+++..++.+ .+.+. +.. .....|..+ =+..+..|+|+.+.. ++|...+|.
T Consensus 187 ~s~~~l~~G~v~~~~v~~--~~~~~~~~~~~~~~~~~~r~~~---~~~y~~~~l~eiv~Ani~VA~~vL~ 251 (357)
T PRK12652 187 LYWFDLLTGAVTALIVAV--LLAHVTFSRPPSLRRTPLRVLR---FLLYVPYLLWEIVKANVAIAYVILH 251 (357)
T ss_pred CCHHHHHHHHHHHHHHHH--HhcccccCCccccccchhhHHH---HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 677899999977655433 33221 111 111222222 233446778887765 888777765
No 117
>PTZ00127 cytochrome c oxidase assembly protein; Provisional
Probab=23.41 E-value=1.5e+02 Score=29.83 Aligned_cols=43 Identities=16% Similarity=0.064 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHH
Q 021217 222 GSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWA 264 (316)
Q Consensus 222 GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml 264 (316)
...+++++++=.+.|+.+.+.+--..-...|...+..+.+.++
T Consensus 353 ~~~ll~lv~lQi~LGi~tv~~~lP~~la~~H~~gA~lLl~~~~ 395 (403)
T PTZ00127 353 LMALLGALTLQVLLGITTLLSQVPVHLAVAHQFGALVLLTTLL 395 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666677766655432225667766665554443
No 118
>COG1612 CtaA Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]
Probab=23.33 E-value=1.7e+02 Score=29.03 Aligned_cols=30 Identities=27% Similarity=0.225 Sum_probs=24.3
Q ss_pred cceehhhhhHHHHHHHHHHHHHHHHhhheeee
Q 021217 131 GRSVALVHPIVMGSLLVYTLWAGYLGWQWRRV 162 (316)
Q Consensus 131 gr~~aliHPi~M~~Lfa~tlyA~yLGwQ~Rr~ 162 (316)
...+.++|.+....+|.+.++. .+|-+|+.
T Consensus 226 ~~~vq~~Hr~~a~~~~~~~l~~--~~~~~r~~ 255 (323)
T COG1612 226 PETVQFVHRLGAYLVFVAALLL--LVAALRRA 255 (323)
T ss_pred chhhhhhHHHHHHHHHHHHHHH--HHHHHhcc
Confidence 4568899999999999999998 56666654
No 119
>PF04654 DUF599: Protein of unknown function, DUF599; InterPro: IPR006747 This family includes several uncharacterised proteins.
Probab=23.33 E-value=1.5e+02 Score=27.30 Aligned_cols=31 Identities=10% Similarity=0.046 Sum_probs=23.9
Q ss_pred hhHhHHhhHHHHHHHHHHHhhhcceeeeecC
Q 021217 214 YRDRHYNAGSILLGFGVLESVGGGVNTYLRA 244 (316)
Q Consensus 214 ~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~ 244 (316)
---++...++.+++--.+.+++|+.+...+.
T Consensus 54 q~Lrn~~~~~tffASTailli~g~~all~~~ 84 (216)
T PF04654_consen 54 QTLRNLIMSATFFASTAILLIGGLLALLGST 84 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 3467889999999888888888877666664
No 120
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=23.29 E-value=4.7e+02 Score=22.29 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=18.8
Q ss_pred hhHHHH-HHHHHHHHHHHHhhheeee
Q 021217 138 HPIVMG-SLLVYTLWAGYLGWQWRRV 162 (316)
Q Consensus 138 HPi~M~-~Lfa~tlyA~yLGwQ~Rr~ 162 (316)
+|.++. .-++.++|-.|+||+..|.
T Consensus 55 ~~~~~~~l~~~G~~~L~~lg~~~~~~ 80 (191)
T PF01810_consen 55 SPWLFMILKLLGALYLLYLGYKLLRS 80 (191)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 454444 7778888999999988766
No 121
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=23.18 E-value=5.1e+02 Score=25.31 Aligned_cols=84 Identities=19% Similarity=0.144 Sum_probs=63.8
Q ss_pred hhhHhHHhhHHHHHHHHHHHhhhcceeeeecCCCc-----CcchhHHHHHHHHHHHHHHHHhhhhhhcC-------ChhH
Q 021217 213 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKL-----FPGPHLFAGAAITVLWALAAALVPAMQKG-------SETA 280 (316)
Q Consensus 213 ~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~GkL-----F~gpHL~aGL~mv~Lml~SaAl~p~MqkG-------r~~a 280 (316)
.+-..|-.+|...+.+..+=.+.|...=+...+.. .-..|-+.|+.+-.+.++.+.++- +.|. -...
T Consensus 121 NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs~lmP~H~~~Gl~~f~lai~ta~~Gl-~ek~~f~~~~~~s~~ 199 (245)
T KOG1619|consen 121 NFYSLHSWLGLCVVILYSLQWVFGFFTFLFPGSPESYRSRLMPWHVFLGLAIFILAIVTALTGL-LEKLTFLCFGDLSTK 199 (245)
T ss_pred ceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcCccccc
Confidence 45689999999999999888888887655555543 358899999999999999888876 5542 1233
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021217 281 RNLHIALNALNILLFIW 297 (316)
Q Consensus 281 R~LHI~LNilLLlLFlw 297 (316)
-.-|...|.+.+.+++.
T Consensus 200 ~~e~~l~n~~gv~~il~ 216 (245)
T KOG1619|consen 200 NPEGYLVNFLGVFIILF 216 (245)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 45788888887766654
No 122
>PRK09110 flagellar motor protein MotA; Validated
Probab=23.07 E-value=3.3e+02 Score=26.48 Aligned_cols=46 Identities=20% Similarity=0.210 Sum_probs=32.6
Q ss_pred hHHHHHhhHHHHHHHhhhhhhHhHHhhHHHHHHHHHHHhhhcceeeeecCC
Q 021217 195 VEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAG 245 (316)
Q Consensus 195 ~~~~i~~l~e~RKeLikg~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~G 245 (316)
.|.+|+..++++++- .+-=..+|..+=++|++|++.|++.+..+-+
T Consensus 147 Le~ei~~~~~~~~~~-----~~v~~~~g~~aPa~GiiGtv~GLI~~l~~l~ 192 (283)
T PRK09110 147 MDEEIETHHHEAEVP-----AHALQKVADALPAFGIVAAVLGVVKTMGSID 192 (283)
T ss_pred HHHHHHHHHHHHHhH-----HHHHHHHHhhCchhHHHHHHHHHHHHHHhcC
Confidence 455566555555532 2223468888889999999999999998775
No 123
>COG3374 Predicted membrane protein [Function unknown]
Probab=23.03 E-value=4.1e+02 Score=25.20 Aligned_cols=95 Identities=23% Similarity=0.216 Sum_probs=56.1
Q ss_pred HhHHhhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhhhhhc--CChhHHHHHHHHHHHHHH
Q 021217 216 DRHYNAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQK--GSETARNLHIALNALNIL 293 (316)
Q Consensus 216 drH~~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~Mqk--Gr~~aR~LHI~LNilLLl 293 (316)
.+|.-.|.+.+++++--.+-|.++-... -.-|..+-+++-.+--++..++|.+.. .+...+.+-+. =+++.+
T Consensus 97 ~dl~~~gi~alflGl~~IvyG~~~y~~~-----mT~~Pla~~~lyil~GLagvlsp~l~ldr~~~~~~~l~v~-~~llii 170 (197)
T COG3374 97 YDLQVTGIFALFLGLYTIVYGVVIYNYG-----MTREPLAALALYILTGLAGVLSPTLALDREKGKAGVLIVE-AALLII 170 (197)
T ss_pred cchhhhHHHHHHcchHheeehhhhhccc-----cccCHHHHHHHHHHHhHHHHHhHHHHHhhcCCeeehhHHH-HHHHHH
Confidence 5666777777777776666655543333 355677777777778888888887743 44455554322 222223
Q ss_pred HHHHHhhchHH-HHHHHhhccCCC
Q 021217 294 LFIWQIPTGID-IVFKVLEFTKWP 316 (316)
Q Consensus 294 LFlwQaiTG~~-IVqK~l~ft~wp 316 (316)
.-+.-.+.|.+ +..-+.+|-+||
T Consensus 171 ~~~iA~~ig~~a~~~h~~~f~kw~ 194 (197)
T COG3374 171 AAVIALYIGATAAIGHLPGFGKWT 194 (197)
T ss_pred HHHHHHHHHHHHhHHhhhhhccCC
Confidence 33344456643 455666777775
No 124
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=23.01 E-value=69 Score=23.63 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=26.2
Q ss_pred HHHHHHHHhhhccee--------eeecCC-CcCcchhHHHHHHHHHHHHH
Q 021217 225 LLGFGVLESVGGGVN--------TYLRAG-KLFPGPHLFAGAAITVLWAL 265 (316)
Q Consensus 225 LL~L~vlgavgG~~~--------T~~r~G-kLF~gpHL~aGL~mv~Lml~ 265 (316)
++..++..++.|++. ++.... ..+..-|.++|..+++++++
T Consensus 9 l~~~~~~~~iSGi~l~~~~~~~~~~~~~~~~~~~~iH~~~g~~~~~l~~~ 58 (64)
T PF14358_consen 9 LLVSFLVLAISGILLSFVPFPGLPFLGLNKHFWRNIHLWAGYLFLILIIL 58 (64)
T ss_pred HHHHHHHHHHHHHHHhhhccccccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555666655 222222 34468999999999998876
No 125
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=22.54 E-value=4.6e+02 Score=21.89 Aligned_cols=88 Identities=25% Similarity=0.233 Sum_probs=47.8
Q ss_pred hhHhHHhhHHHHHHHHHHHhhhc-----------------ceeeeecCCCcC------cc---hhHHHHHHHHHHHHHHH
Q 021217 214 YRDRHYNAGSILLGFGVLESVGG-----------------GVNTYLRAGKLF------PG---PHLFAGAAITVLWALAA 267 (316)
Q Consensus 214 ~rdrH~~~GsiLL~L~vlgavgG-----------------~~~T~~r~GkLF------~g---pHL~aGL~mv~Lml~Sa 267 (316)
.++-|...|.++.++.++-.+-. -+.. ...++.- .. .|...-+.++++.+.+.
T Consensus 42 ~~~~H~~~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iTG~ 120 (182)
T PF01292_consen 42 VRNWHVIAGLLLFALLIFRLLWRWRRLFPWSDDVFFQVKNYLYF-LLRGKPPPAGKYNPGQKIVHWVLYLLLLLLPITGL 120 (182)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHH-HhcCCCCCCCcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 36779999999998886665544 0000 1122211 11 23333333344444444
Q ss_pred Hhhhh----------hhcCChhHHHHHHHHHHHHHHHHHHHhhch
Q 021217 268 ALVPA----------MQKGSETARNLHIALNALNILLFIWQIPTG 302 (316)
Q Consensus 268 Al~p~----------MqkGr~~aR~LHI~LNilLLlLFlwQaiTG 302 (316)
++... .......+|.+|-.+-.+++.....+++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~vH~~~a~~~i~~i~~Hv~~a 165 (182)
T PF01292_consen 121 LLWFASAEGFPLFAASPGGAQIARSVHFFLAWLLIAFIILHVYAA 165 (182)
T ss_pred HHHHhhcccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44221 122367899999665555558888887644
No 126
>PLN02351 cytochromes b561 family protein
Probab=22.45 E-value=2.7e+02 Score=26.95 Aligned_cols=57 Identities=19% Similarity=0.056 Sum_probs=36.7
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhhhcC-ChhHHHHHHHHHHHHHHHHHHHhhchHHH
Q 021217 249 PGPHLFAGAAITVLWALAAALVPAMQKG-SETARNLHIALNALNILLFIWQIPTGIDI 305 (316)
Q Consensus 249 ~gpHL~aGL~mv~Lml~SaAl~p~MqkG-r~~aR~LHI~LNilLLlLFlwQaiTG~~I 305 (316)
..-|...=.....+.+++....-....+ .+-.-.+|..+++..+.||..|.+.|.-.
T Consensus 84 K~lH~~Lh~~Ali~~vvGl~a~fh~~~~~i~nlySLHSWlGl~tv~Lf~lQwv~Gf~~ 141 (242)
T PLN02351 84 KSVHLWLQGLALASGVFGIWTKFHGQDGIVANFYSLHSWMGLICVSLFGAQWLTGFMS 141 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554444444444444442222222 25577899999999999999999999743
No 127
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=22.35 E-value=64 Score=30.23 Aligned_cols=33 Identities=30% Similarity=0.287 Sum_probs=25.5
Q ss_pred hhhhHHHH--HHHHHHHHHHHHhhheeeeeccccc
Q 021217 136 LVHPIVMG--SLLVYTLWAGYLGWQWRRVRTIQTD 168 (316)
Q Consensus 136 liHPi~M~--~Lfa~tlyA~yLGwQ~Rr~Rt~g~e 168 (316)
||==+.++ .|++..+|++|.-||+|.-+..+.+
T Consensus 102 lI~lv~~g~~lLla~~~~~~Y~~~~Rrs~~~~~~r 136 (202)
T PF06365_consen 102 LIALVTSGSFLLLAILLGAGYCCHQRRSWSKKGQR 136 (202)
T ss_pred EEehHHhhHHHHHHHHHHHHHHhhhhccCCcchhh
Confidence 33445677 8899999999999999987666544
No 128
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=22.17 E-value=2.5e+02 Score=22.45 Aligned_cols=19 Identities=11% Similarity=-0.050 Sum_probs=10.6
Q ss_pred hhhhhHhHHhhHHHHHHHH
Q 021217 211 KGSYRDRHYNAGSILLGFG 229 (316)
Q Consensus 211 kg~~rdrH~~~GsiLL~L~ 229 (316)
||..+++.|.+..+...+.
T Consensus 6 ~GR~~R~~fw~~~l~~~~~ 24 (120)
T PF05656_consen 6 KGRISRKEFWWFFLINILI 24 (120)
T ss_pred cCCcCHHHHHHHHHHHHHH
Confidence 3556666666666554333
No 129
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=22.10 E-value=1.5e+02 Score=24.47 Aligned_cols=57 Identities=19% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhheeeeeccccchHHHhhhcCCCCCCCCCCCCCCCCChhHHHHHhhHHHHHHHhhhhhhHhH
Q 021217 140 IVMGSLLVYTLWAGYLGWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKELLKGSYRDRH 218 (316)
Q Consensus 140 i~M~~Lfa~tlyA~yLGwQ~Rr~Rt~g~ei~elkk~~~~~~~~~~g~~~~~~~sp~~~~i~~l~e~RKeLikg~~rdrH 218 (316)
++-++..+..++.+|+.||.++.+..-++..+=+.|+ ..+++.-+.+.|.- ..|.+|
T Consensus 6 iv~~~~~v~~~i~~y~~~k~~ka~~~~~kL~~en~ql-------------------k~Ek~~~~~qvkn~---~vrqkn 62 (87)
T PF10883_consen 6 IVGGVGAVVALILAYLWWKVKKAKKQNAKLQKENEQL-------------------KTEKAVAETQVKNA---KVRQKN 62 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHH---HHHHHh
No 130
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=21.98 E-value=2.3e+02 Score=23.45 Aligned_cols=63 Identities=24% Similarity=0.237 Sum_probs=31.9
Q ss_pred HHhhhhhhHhHHhhHHHHHHHHHHHhhhcceeee--ecCCCcCcchhHHHHHHHHHHHHHHHHhh
Q 021217 208 ELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTY--LRAGKLFPGPHLFAGAAITVLWALAAALV 270 (316)
Q Consensus 208 eLikg~~rdrH~~~GsiLL~L~vlgavgG~~~T~--~r~GkLF~gpHL~aGL~mv~Lml~SaAl~ 270 (316)
|.+|+-.+|-=--.|.++.+.+.+.-...++.|| .|.|+--|+.-...+...++|+.+..++.
T Consensus 17 ~~i~~y~~d~~~l~gLv~~a~afi~Va~~~i~~y~eir~gK~~W~~fg~~~vVGvvLlv~viwLl 81 (87)
T PF11190_consen 17 ETIKGYAKDGVLLLGLVLAAAAFIVVAKAAISTYNEIRDGKKTWGDFGATVVVGVVLLVFVIWLL 81 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHhhhHHHHHHHHHHHHHHHH
Confidence 4566666776666666665544444444444443 24456555444444444444444444443
No 131
>COG3182 PiuB Uncharacterized iron-regulated membrane protein [Function unknown]
Probab=21.75 E-value=1.9e+02 Score=29.88 Aligned_cols=76 Identities=24% Similarity=0.232 Sum_probs=45.7
Q ss_pred hhhHhHHhhHH-----HHH----HHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhhhh-hcCChhHHH
Q 021217 213 SYRDRHYNAGS-----ILL----GFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAM-QKGSETARN 282 (316)
Q Consensus 213 ~~rdrH~~~Gs-----iLL----~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~M-qkGr~~aR~ 282 (316)
+.++.|+.+.. .++ .++++..+.|.+..+-++.+ +.+ .+.+.. .++|..||.
T Consensus 126 ~~~~LH~~L~~g~~G~ylve~aa~~~i~~lVsG~~L~~pr~r~-~~~-----------------~~~~r~~~~~R~fw~D 187 (442)
T COG3182 126 FMRELHSDLLLGTVGDYLVELAALLLIVLLVSGLYLWWPRRRK-WRG-----------------LLTVRPGKRARRFWRD 187 (442)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhheeeeecccc-ccc-----------------ceeeccccccchHHHH
Confidence 67788887543 222 34445555566665555554 211 111112 235889999
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHH
Q 021217 283 LHIALNALNILLFIWQIPTGIDIV 306 (316)
Q Consensus 283 LHI~LNilLLlLFlwQaiTG~~IV 306 (316)
+|..+.+.+.+.|+.=++||+..+
T Consensus 188 ~H~v~G~w~~~~~l~l~~tgL~w~ 211 (442)
T COG3182 188 LHAVLGLWCSLLFLFLALTGLAWS 211 (442)
T ss_pred HhhccchHHHHHHHHHHHHhhhHH
Confidence 999999887777777777775544
No 132
>PRK10801 colicin uptake protein TolQ; Provisional
Probab=21.69 E-value=2.6e+02 Score=26.10 Aligned_cols=52 Identities=23% Similarity=0.279 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHHhhhcceeeeecCCCcC-cchhHHHHHHHHHHHHHHHHhhh
Q 021217 220 NAGSILLGFGVLESVGGGVNTYLRAGKLF-PGPHLFAGAAITVLWALAAALVP 271 (316)
Q Consensus 220 ~~GsiLL~L~vlgavgG~~~T~~r~GkLF-~gpHL~aGL~mv~Lml~SaAl~p 271 (316)
.+|++-=.+|++|+|.||+.+...-+.-. ..+-..+|=+-.+|+..++.+.-
T Consensus 129 ti~~~aP~lGLlGTV~Gmi~aF~~i~~~g~~~~~~~a~GI~~ALitTa~GL~v 181 (227)
T PRK10801 129 TVGSISPYIGLFGTVWGIMHAFIALGAVKQATLQMVAPGIAEALIATAIGLFA 181 (227)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35566668999999999999887776544 34555555555555555554443
No 133
>PF05106 Phage_holin_3: Phage holin family (Lysis protein S); InterPro: IPR006481 This entry is represented by the Bacteriophage lambda, GpS. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=21.68 E-value=3.3e+02 Score=22.47 Aligned_cols=41 Identities=27% Similarity=0.208 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHHHHHHhh
Q 021217 260 TVLWALAAALVPAMQKGSETARNLHIALNALNILLFIWQIP 300 (316)
Q Consensus 260 v~Lml~SaAl~p~MqkGr~~aR~LHI~LNilLLlLFlwQai 300 (316)
-+++++..+.....+.|..|.|.+==++-|.++.+|+..+.
T Consensus 24 ~a~lA~~mA~LR~~Y~g~~~~r~llea~lCg~lal~~~~~L 64 (100)
T PF05106_consen 24 GALLAFVMALLRGAYGGGSWRRRLLEALLCGLLALFARSLL 64 (100)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556667777888999999888888888888877654
No 134
>TIGR00203 cydB cytochrome d oxidase, subunit II (cydB). part of a two component cytochrome D terminal complex. Terminal reaction in the aerobic respiratory chain.
Probab=21.68 E-value=8.6e+02 Score=24.71 Aligned_cols=63 Identities=17% Similarity=0.267 Sum_probs=35.5
Q ss_pred cccchhhhhhccccCchhhhhccCc-c------c-ccccceehhhhhHHHH-HHHHHHHHHHHHhhheeeeec
Q 021217 101 AVLPVTTITLPFLLDTKDALAVNGE-F------G-ILEGRSVALVHPIVMG-SLLVYTLWAGYLGWQWRRVRT 164 (316)
Q Consensus 101 ~~~~~~~~~~p~~~~~~~a~a~~g~-~------g-~~egr~~aliHPi~M~-~Lfa~tlyA~yLGwQ~Rr~Rt 164 (316)
.....++++.|++++.--+.-+.|- . | -.+|--+.|.+|.... +++...+|+ ++|--|-..||
T Consensus 121 ~~f~vgSll~p~~lGv~~g~~~~G~~~~~~~~~~~~~~g~~~~ll~Pfsll~Gl~~v~~~~-~~GA~~L~~kt 192 (378)
T TIGR00203 121 WGLFIGSLVPPLVFGVAFGNLLQGVPFDFDENLRVHYTGSFFQLLNPFSLLCGVTSLGMCI-THGAMWLQLRT 192 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCeeccccccccccccccHHhhcCHHHHHHHHHHHHHHH-HHHHHHHHHhh
Confidence 3456667788888887544444442 0 2 2334456889998777 555555554 33434433333
No 135
>COG3090 DctM TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism]
Probab=21.42 E-value=5.8e+02 Score=22.67 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=31.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhhcc
Q 021217 277 SETARNLHIALNALNILLFIWQIPTGIDIVFKVLEFT 313 (316)
Q Consensus 277 r~~aR~LHI~LNilLLlLFlwQaiTG~~IVqK~l~ft 313 (316)
+...|.+.+..+++.++.++.=++.||+.+...++.+
T Consensus 85 ~~~r~~l~~~~~~l~l~f~~~l~~~~~~~~~~~~~~~ 121 (177)
T COG3090 85 PRARKILRIIADLLILVFFLLLIWGGWKLAAINWSQG 121 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5667779999999999999999999999999887543
No 136
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=21.39 E-value=25 Score=26.03 Aligned_cols=38 Identities=24% Similarity=0.368 Sum_probs=21.1
Q ss_pred hhheeeeeccccchHHHhhhcCCCCCCCCCCCCCCCCChhHHHHHhhHHHHHHH
Q 021217 156 GWQWRRVRTIQTDINELKKQVKPTPVTPDGAPAETAPSPVEIKIQQLTEERKEL 209 (316)
Q Consensus 156 GwQ~Rr~Rt~g~ei~elkk~~~~~~~~~~g~~~~~~~sp~~~~i~~l~e~RKeL 209 (316)
.....+.....+++.+|++++.. .+.++++|.++.+.|
T Consensus 13 ~~~~~~~~~~~~ei~~l~~~i~~----------------l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 13 ISGYSRYYQLNQEIAELQKEIEE----------------LKKENEELKEEIERL 50 (80)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHh
Confidence 33334444556677777776643 245556666665554
No 137
>PF06197 DUF998: Protein of unknown function (DUF998); InterPro: IPR009339 This is a family of proteins with no known function.
Probab=21.30 E-value=2e+02 Score=24.25 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=17.0
Q ss_pred chhHHHHHHHHHHHHHHHHhhh
Q 021217 250 GPHLFAGAAITVLWALAAALVP 271 (316)
Q Consensus 250 gpHL~aGL~mv~Lml~SaAl~p 271 (316)
..|.+++......+.++..+..
T Consensus 103 ~~H~~~a~~~f~~~~~~~ll~~ 124 (184)
T PF06197_consen 103 QVHVLAAILAFLALALALLLLA 124 (184)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 4899999888877777776655
No 138
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=21.28 E-value=95 Score=23.28 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=11.8
Q ss_pred hHHHHHhhHHHHHHHhhhhhhHhHHhh
Q 021217 195 VEIKIQQLTEERKELLKGSYRDRHYNA 221 (316)
Q Consensus 195 ~~~~i~~l~e~RKeLikg~~rdrH~~~ 221 (316)
++.+|++|.+.|+.|+ ++|..+
T Consensus 24 id~qIaeLe~KR~~Lv-----~qHP~i 45 (46)
T PF08946_consen 24 IDEQIAELEAKRQRLV-----DQHPRI 45 (46)
T ss_dssp HHHHHHHHHHHHHHHH-----HH----
T ss_pred HHHHHHHHHHHHHHHH-----HhCCCC
Confidence 4556777777777554 667653
No 139
>TIGR03818 MotA1 flagellar motor stator protein MotA. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.
Probab=21.03 E-value=2.2e+02 Score=27.63 Aligned_cols=46 Identities=24% Similarity=0.221 Sum_probs=32.2
Q ss_pred hHHHHHhhHHHHHHHhhhhhhHhHHhhHHHHHHHHHHHhhhcceeeeecCC
Q 021217 195 VEIKIQQLTEERKELLKGSYRDRHYNAGSILLGFGVLESVGGGVNTYLRAG 245 (316)
Q Consensus 195 ~~~~i~~l~e~RKeLikg~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~G 245 (316)
.|.+|+..++++++- .+-=..+|..+=++|++|++.|++.+..+-+
T Consensus 147 Le~ei~~~~~~~~~~-----~~v~~~~g~~aPa~GiiGtvlGLI~~l~~l~ 192 (282)
T TIGR03818 147 MEEEIETHHHELLKP-----AHALQKVADALPGFGIVAAVLGVVITMGSID 192 (282)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHhhCchhhHHHHHHHHHHHHHhcC
Confidence 445555555555532 1222467888889999999999999998885
No 140
>PF06197 DUF998: Protein of unknown function (DUF998); InterPro: IPR009339 This is a family of proteins with no known function.
Probab=20.69 E-value=5.1e+02 Score=21.73 Aligned_cols=21 Identities=33% Similarity=0.260 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHhhhcceee
Q 021217 220 NAGSILLGFGVLESVGGGVNT 240 (316)
Q Consensus 220 ~~GsiLL~L~vlgavgG~~~T 240 (316)
+.+.++.++..+....|+...
T Consensus 43 ~~~~~~~g~~~~~~a~~l~~~ 63 (184)
T PF06197_consen 43 NIGFILSGVLFLAFAVGLFRA 63 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 566666666666655555554
No 141
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=20.59 E-value=1.5e+02 Score=28.41 Aligned_cols=13 Identities=8% Similarity=0.079 Sum_probs=6.8
Q ss_pred hhhhhHhHHhhHH
Q 021217 211 KGSYRDRHYNAGS 223 (316)
Q Consensus 211 kg~~rdrH~~~Gs 223 (316)
+|....++....+
T Consensus 93 ~G~is~~~a~~~~ 105 (306)
T TIGR02056 93 SGAISEPEVITQI 105 (306)
T ss_pred CCccCHHHHHHHH
Confidence 3455566555444
No 142
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=20.42 E-value=1.5e+02 Score=27.61 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=23.4
Q ss_pred ccccccccccccccchhhhhHhHhhhhcccc
Q 021217 73 TSTQLNCIRKDSNNQQTLVNETLVRFKSAVL 103 (316)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (316)
...+++....+..||..-..|.++.+.+.++
T Consensus 114 ~yY~l~~~~~~idNpDQRIteDi~~f~~~~~ 144 (281)
T PF06472_consen 114 TYYRLNNLDGRIDNPDQRITEDIRKFTESSL 144 (281)
T ss_pred hhHhhhccccccccHhhHHHHHHHHHHHHHH
Confidence 5667777777778899999999998854443
Done!