Query 021217
Match_columns 316
No_of_seqs 135 out of 161
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 14:27:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021217.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021217hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gd3_A NI/Fe-hydrogenase 1 B-t 77.0 7.6 0.00026 33.7 7.5 55 213-267 17-78 (235)
2 4gd3_A NI/Fe-hydrogenase 1 B-t 70.4 38 0.0013 29.2 10.4 27 276-302 176-202 (235)
3 1kqf_C FDH-N gamma, formate de 67.8 12 0.00039 31.8 6.4 53 213-267 13-72 (217)
4 1kqf_C FDH-N gamma, formate de 62.1 32 0.0011 29.1 8.0 90 213-303 52-174 (217)
5 1a93_B MAX protein, coiled coi 22.8 10 0.00034 25.8 -1.2 21 156-176 3-23 (34)
6 4ev6_A Magnesium transport pro 19.3 2.6E+02 0.0089 25.3 7.0 54 224-279 285-338 (339)
7 2iub_A CORA, divalent cation t 19.2 3.7E+02 0.013 24.5 8.1 58 220-279 305-362 (363)
8 2wh0_Q Pkcev3, protein kinase 16.7 1E+02 0.0035 20.2 2.6 21 189-209 5-26 (31)
9 3v5u_A Uncharacterized membran 11.5 1.4E+02 0.0049 27.6 3.1 20 144-163 128-147 (320)
10 1wrg_A LH-1, light-harvesting 9.8 2E+02 0.0069 21.0 2.7 25 137-161 19-46 (55)
No 1
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=76.96 E-value=7.6 Score=33.68 Aligned_cols=55 Identities=18% Similarity=0.069 Sum_probs=35.8
Q ss_pred hhhHhHHhhHHHHHHHHHHHhhhcceeeeecCCCc--C-----cchhHHHHHHHHHHHHHHH
Q 021217 213 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRAGKL--F-----PGPHLFAGAAITVLWALAA 267 (316)
Q Consensus 213 ~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~GkL--F-----~gpHL~aGL~mv~Lml~Sa 267 (316)
..|--|+-.-...+++++.|...+-.......+.. + ...|.++|.++++++++=.
T Consensus 17 ~~R~~HW~~a~~ii~l~~tG~~~~~~~~~~~g~~~~~~~~~~~~~~H~~~G~~~~~l~~~Rl 78 (235)
T 4gd3_A 17 PVRIWHWLTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMVFTVVLLMRI 78 (235)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHSCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788998888888887777665432211111111 1 1379999999999988743
No 2
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=70.40 E-value=38 Score=29.21 Aligned_cols=27 Identities=15% Similarity=-0.102 Sum_probs=22.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhhch
Q 021217 276 GSETARNLHIALNALNILLFIWQIPTG 302 (316)
Q Consensus 276 Gr~~aR~LHI~LNilLLlLFlwQaiTG 302 (316)
+..++|.+|-.+..+++++.+.+++-.
T Consensus 176 ~~~~~~~iH~~~a~~l~~~v~lHv~aa 202 (235)
T 4gd3_A 176 NSMDIHSWHRLGMWLIGAFVIGHVYMA 202 (235)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999988888887654
No 3
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=67.84 E-value=12 Score=31.81 Aligned_cols=53 Identities=19% Similarity=0.018 Sum_probs=34.4
Q ss_pred hhhHhHHhhHHHHHHHHHHHhhhcceeeeec-----CC--CcCcchhHHHHHHHHHHHHHHH
Q 021217 213 SYRDRHYNAGSILLGFGVLESVGGGVNTYLR-----AG--KLFPGPHLFAGAAITVLWALAA 267 (316)
Q Consensus 213 ~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r-----~G--kLF~gpHL~aGL~mv~Lml~Sa 267 (316)
..|--|+-....++++.+.|...+ ..... .| ......|.++|.++++++++=.
T Consensus 13 ~~R~~HW~~a~~ii~l~~tG~~i~--~p~~~~l~~~~g~~~~~~~~H~~~G~~~~~l~~~r~ 72 (217)
T 1kqf_C 13 IDRACHWTVVICFFLVALSGISFF--FPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMF 72 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--CTTCGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--chhHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 567889988888777777776433 11100 01 1124689999999998887643
No 4
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=62.06 E-value=32 Score=29.06 Aligned_cols=90 Identities=11% Similarity=-0.084 Sum_probs=49.8
Q ss_pred hhhHhHHhhHHHHHHHHHHHhhhcceeeeecC-CC------------------cCcchhHHHH----HHHHHHHHHHHHh
Q 021217 213 SYRDRHYNAGSILLGFGVLESVGGGVNTYLRA-GK------------------LFPGPHLFAG----AAITVLWALAAAL 269 (316)
Q Consensus 213 ~~rdrH~~~GsiLL~L~vlgavgG~~~T~~r~-Gk------------------LF~gpHL~aG----L~mv~Lml~SaAl 269 (316)
..+.-|...|.+++++++.-.+ ......... .+ --.+.|-..+ +++.+++++...+
T Consensus 52 ~~~~~H~~~G~~~~~l~~~r~~-r~~r~~~p~~~~~~~~~~~~~yl~~~~~~~p~~~~~n~~~~~~~~~l~~l~~~~~~T 130 (217)
T 1kqf_C 52 MGRILHPFFGIAIFVALMFMFV-RFVHHNIPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVT 130 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHGGGSCCCGGGHHHHHSHHHHHTTCHHHHCCCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4778999999999988776443 111000000 00 0001122222 3333334444444
Q ss_pred hhhhhc----------CChhHHHHHHHHHHHHHHHHHHHhhchH
Q 021217 270 VPAMQK----------GSETARNLHIALNALNILLFIWQIPTGI 303 (316)
Q Consensus 270 ~p~Mqk----------Gr~~aR~LHI~LNilLLlLFlwQaiTG~ 303 (316)
+-.|.. +..++|.+|..+..+++++.+.+++-..
T Consensus 131 G~~~~~~~~~~~~~~~~~~~~~~iH~~~a~~l~~~v~~Hv~~al 174 (217)
T 1kqf_C 131 GVIIWRPYFAQYFPMQVVRYSLLIHAAAGIILIHAILIHMYMAF 174 (217)
T ss_dssp HHHTCTTTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444432 2467899999999888888888876543
No 5
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=22.75 E-value=10 Score=25.77 Aligned_cols=21 Identities=43% Similarity=0.507 Sum_probs=15.3
Q ss_pred hhheeeeeccccchHHHhhhc
Q 021217 156 GWQWRRVRTIQTDINELKKQV 176 (316)
Q Consensus 156 GwQ~Rr~Rt~g~ei~elkk~~ 176 (316)
|+++|+.-+-+.+|++||+|-
T Consensus 3 ~~mRrKn~a~qqDIddlkrQN 23 (34)
T 1a93_B 3 GGMRRKNDTHQQDIDDLKRQN 23 (34)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhhHhhHhhHHHHHHHH
Confidence 566777767778888888763
No 6
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=19.32 E-value=2.6e+02 Score=25.29 Aligned_cols=54 Identities=15% Similarity=0.044 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhhhhhcCChh
Q 021217 224 ILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSET 279 (316)
Q Consensus 224 iLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~MqkGr~~ 279 (316)
+-..|..+.++.|+++--+.+=+...+++.|. .++++|++.++..-...|.+.|
T Consensus 285 it~IflP~T~IaGiyGMNf~~mPel~~~~gy~--~~l~~m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 285 VTTIFAVPMWITGIYGMNFSYLPLANNPQGFW--LVMALMVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHSSHHHHHHHHTTCCCSCCTTSSCTTHHH--HHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhhccCcCCCCCCccCchHHH--HHHHHHHHHHHHHHHHHHHcCC
Confidence 33445556666777765444333334444332 2233333333333333444555
No 7
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=19.18 E-value=3.7e+02 Score=24.55 Aligned_cols=58 Identities=10% Similarity=-0.037 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHhhhcceeeeecCCCcCcchhHHHHHHHHHHHHHHHHhhhhhhcCChh
Q 021217 220 NAGSILLGFGVLESVGGGVNTYLRAGKLFPGPHLFAGAAITVLWALAAALVPAMQKGSET 279 (316)
Q Consensus 220 ~~GsiLL~L~vlgavgG~~~T~~r~GkLF~gpHL~aGL~mv~Lml~SaAl~p~MqkGr~~ 279 (316)
.+-++-..|..+-++.|+++--+.+=+...+++.|. .++++|++.++..-...|.+.|
T Consensus 305 ~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~Gy~--~~l~~m~~i~~~~~~~Fkrk~W 362 (363)
T 2iub_A 305 VLTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYP--VVLAVMGVIAVIMVVYFKKKKW 362 (363)
T ss_dssp HHHHHHHHHHHHHHHTTSCC--------------CH--HHHHHHHHHHHHHHTTTTSCC-
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCCcccCcHHHH--HHHHHHHHHHHHHHHHHHHccc
Confidence 445556677778888888775554333333343332 2233333333333333444554
No 8
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=16.73 E-value=1e+02 Score=20.21 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=16.2
Q ss_pred CCCCChhHHHHHhhHH-HHHHH
Q 021217 189 ETAPSPVEIKIQQLTE-ERKEL 209 (316)
Q Consensus 189 ~~~~sp~~~~i~~l~e-~RKeL 209 (316)
.+|.||-+++|.+|+. .||.|
T Consensus 5 saptspcdqeikelennirkal 26 (31)
T 2wh0_Q 5 SAPTSPCDQEIKELENNIRKAL 26 (31)
T ss_pred cCCCCchHHHHHHHHHHHHHHh
Confidence 3577899999999975 46665
No 9
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=11.52 E-value=1.4e+02 Score=27.57 Aligned_cols=20 Identities=20% Similarity=0.491 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhhheeeee
Q 021217 144 SLLVYTLWAGYLGWQWRRVR 163 (316)
Q Consensus 144 ~Lfa~tlyA~yLGwQ~Rr~R 163 (316)
++....+|..|+.|++|+.|
T Consensus 128 g~~Ll~~Y~~yl~~~~~~~~ 147 (320)
T 3v5u_A 128 GVVLLILFIIYLRWTVKNGS 147 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 66777889999999988664
No 10
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=9.84 E-value=2e+02 Score=21.04 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=19.3
Q ss_pred hhhHHHH---HHHHHHHHHHHHhhheee
Q 021217 137 VHPIVMG---SLLVYTLWAGYLGWQWRR 161 (316)
Q Consensus 137 iHPi~M~---~Lfa~tlyA~yLGwQ~Rr 161 (316)
+|-++|- ..+++++-|-.|.|.||-
T Consensus 19 fH~~f~~~~~~F~~iAvvAH~L~~~wrP 46 (55)
T 1wrg_A 19 FHKIFTSSILVFFGVAAFAHLLVWIWRP 46 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6777766 566677788999999984
Done!