Query 021217
Match_columns 316
No_of_seqs 135 out of 161
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 14:27:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021217.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021217hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1y5ic1 f.21.3.1 (C:1-225) Res 46.2 39 0.0028 27.3 8.3 28 277-304 115-142 (225)
2 d1q90b_ f.21.1.2 (B:) Cytochro 40.8 24 0.0017 29.5 6.1 85 219-304 31-134 (212)
3 d3cx5c2 f.21.1.2 (C:1-261) Mit 32.2 47 0.0035 28.3 6.8 86 219-305 30-134 (261)
4 d1kqfc_ f.21.1.1 (C:) Formate 23.9 1.5E+02 0.011 22.7 10.5 27 277-303 147-173 (216)
5 d1ppjc2 f.21.1.2 (C:15-260) Mi 19.2 1.1E+02 0.0078 25.5 6.5 82 219-303 17-117 (246)
6 d1kqfc_ f.21.1.1 (C:) Formate 16.6 1.3E+02 0.0098 23.0 6.1 23 213-235 12-34 (216)
7 d1q90d_ f.32.1.1 (D:) Subunit 16.5 1E+02 0.0074 24.3 5.4 50 253-302 91-144 (156)
8 d1jb0i_ f.23.17.1 (I:) Subunit 14.6 35 0.0026 21.9 1.6 15 134-148 18-33 (38)
9 d1nekd_ f.21.2.2 (D:) Succinat 11.6 1.3E+02 0.0093 21.7 4.3 28 283-310 54-82 (113)
10 d2rcda1 d.17.4.18 (A:1-127) Un 11.3 29 0.0021 24.3 0.4 9 1-9 1-9 (127)
No 1
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=46.22 E-value=39 Score=27.27 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=21.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhchHH
Q 021217 277 SETARNLHIALNALNILLFIWQIPTGID 304 (316)
Q Consensus 277 r~~aR~LHI~LNilLLlLFlwQaiTG~~ 304 (316)
++..|.....-..+++++.+.+..||.-
T Consensus 115 ~~~~r~~~~~~d~~~L~ll~~i~~tG~~ 142 (225)
T d1y5ic1 115 SPRVRATTTGADILILSLLVIQCALGLL 142 (225)
T ss_dssp SHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccccCcHHHHHHHHHHHHHHHHHHH
Confidence 4556776677777888888889999963
No 2
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=40.81 E-value=24 Score=29.47 Aligned_cols=85 Identities=16% Similarity=0.145 Sum_probs=62.2
Q ss_pred HhhHHHHHHHHHHHhhhcceeeeecC-------------------CCcCcchhHHHHHHHHHHHHHHHHhhhhhhcCChh
Q 021217 219 YNAGSILLGFGVLESVGGGVNTYLRA-------------------GKLFPGPHLFAGAAITVLWALAAALVPAMQKGSET 279 (316)
Q Consensus 219 ~~~GsiLL~L~vlgavgG~~~T~~r~-------------------GkLF~gpHL~aGL~mv~Lml~SaAl~p~MqkGr~~ 279 (316)
|+.|+++...++.-.+-|+.-+.... |.+..+-|.+++=.++.++.+=..-+-.... -+.
T Consensus 31 ~~~Gsll~~~~~iqi~TGi~L~~~Y~p~~~~A~~Sv~~I~~~v~~G~liR~lH~~gAs~~~~~~~lHm~r~~~~gs-yk~ 109 (212)
T d1q90b_ 31 YCIGGITFTCFLVQVATGFAMTFYYRPTVAEAFASVQYIMTDVNFGWLIRSIHRWSASMMVLMMVLHVFRVYLTGG-FKR 109 (212)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHTTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-TSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhCCCchhhcccccccchHHHHHHHHHHHHHHHcCc-ccC
Confidence 88999999999988888887664332 2244578999999888888775554433322 223
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHH
Q 021217 280 ARNLHIALNALNILLFIWQIPTGID 304 (316)
Q Consensus 280 aR~LHI~LNilLLlLFlwQaiTG~~ 304 (316)
.|.+-=...++++++....++||--
T Consensus 110 pre~~W~~Gv~l~~l~m~~aftGY~ 134 (212)
T d1q90b_ 110 PRELTWVTGVIMAVCTVSFGVTGYS 134 (212)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceehHhHHHHHHHHHHHHhhhh
Confidence 4777778889999999999999853
No 3
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=32.18 E-value=47 Score=28.28 Aligned_cols=86 Identities=16% Similarity=0.032 Sum_probs=61.4
Q ss_pred HhhHHHHHHHHHHHhhhcceeeeecC-------------------CCcCcchhHHHHHHHHHHHHHHHHhhhhhhcCChh
Q 021217 219 YNAGSILLGFGVLESVGGGVNTYLRA-------------------GKLFPGPHLFAGAAITVLWALAAALVPAMQKGSET 279 (316)
Q Consensus 219 ~~~GsiLL~L~vlgavgG~~~T~~r~-------------------GkLF~gpHL~aGL~mv~Lml~SaAl~p~MqkGr~~ 279 (316)
++.|+++...++.-.+-|+.-+.... |.+..+-|.+++-.+..++.+=..-+-....-+.
T Consensus 30 w~~G~ll~~~~~iqiiTGi~L~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~ga~~~~~~~~lH~~r~~~~gsy~~- 108 (261)
T d3cx5c2 30 WNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYGSYRS- 108 (261)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTST-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheecCChHHHHHHHHHHHhhhccChhhhhcccccHHHHHHHHHHHHHHHHHhccccC-
Confidence 67899999999998888887665443 3344678999998888888775544444332221
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHH
Q 021217 280 ARNLHIALNALNILLFIWQIPTGIDI 305 (316)
Q Consensus 280 aR~LHI~LNilLLlLFlwQaiTG~~I 305 (316)
-|..-=..+++++++....++||--.
T Consensus 109 pre~~W~~Gv~l~~l~~~~af~GY~L 134 (261)
T d3cx5c2 109 PRVTLWNVGVIIFILTIATAFLGYCC 134 (261)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHhhHHHHHHHHHHHHhhhhc
Confidence 35555567888888899999998644
No 4
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=23.88 E-value=1.5e+02 Score=22.75 Aligned_cols=27 Identities=11% Similarity=0.081 Sum_probs=22.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhchH
Q 021217 277 SETARNLHIALNALNILLFIWQIPTGI 303 (316)
Q Consensus 277 r~~aR~LHI~LNilLLlLFlwQaiTG~ 303 (316)
..++|.+|...-.++++..+.+++-..
T Consensus 147 ~~~~~~iH~~~~~l~~~~vi~Hvy~a~ 173 (216)
T d1kqfc_ 147 VRYSLLIHAAAGIILIHAILIHMYMAF 173 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999998888887553
No 5
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=19.22 E-value=1.1e+02 Score=25.55 Aligned_cols=82 Identities=11% Similarity=-0.012 Sum_probs=57.0
Q ss_pred HhhHHHHHHHHHHHhhhcceeeeecCC-------------------CcCcchhHHHHHHHHHHHHHHHHhhhhhhcCChh
Q 021217 219 YNAGSILLGFGVLESVGGGVNTYLRAG-------------------KLFPGPHLFAGAAITVLWALAAALVPAMQKGSET 279 (316)
Q Consensus 219 ~~~GsiLL~L~vlgavgG~~~T~~r~G-------------------kLF~gpHL~aGL~mv~Lml~SaAl~p~MqkGr~~ 279 (316)
|+.|+++...++.-.+-|+.-+....- -+..+.|.++.-.+..++-+=..-+-....- +.
T Consensus 17 w~~G~ll~~~~~iqiiTGi~L~~~Y~p~~~~A~~Sv~~i~~~v~~G~~iR~~H~~gas~~~~~~~lHm~r~~~~~sy-~~ 95 (246)
T d1ppjc2 17 WNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLYYGSY-TF 95 (246)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHTTCCCCTTTHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGG-GS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCcccCchhhcchhHhHHHHHHHHHHHHHHHHHHhcCc-cc
Confidence 789999999999999999877665432 2445789998888888777654444433221 12
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchH
Q 021217 280 ARNLHIALNALNILLFIWQIPTGI 303 (316)
Q Consensus 280 aR~LHI~LNilLLlLFlwQaiTG~ 303 (316)
-|. -..+++++++....+++|-
T Consensus 96 ~~~--w~~G~~l~~l~m~~af~GY 117 (246)
T d1ppjc2 96 LET--WNIGVILLLTVMATAFMGY 117 (246)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHH
T ss_pred hHH--HHHHHHHHHHHHHHHHeec
Confidence 233 3467788888888888884
No 6
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=16.59 E-value=1.3e+02 Score=23.00 Aligned_cols=23 Identities=9% Similarity=-0.096 Sum_probs=15.8
Q ss_pred hhhHhHHhhHHHHHHHHHHHhhh
Q 021217 213 SYRDRHYNAGSILLGFGVLESVG 235 (316)
Q Consensus 213 ~~rdrH~~~GsiLL~L~vlgavg 235 (316)
.-|--|+-....++.+.+.|...
T Consensus 12 ~~Rl~HW~~a~~~i~L~~TGl~l 34 (216)
T d1kqfc_ 12 IDRACHWTVVICFFLVALSGISF 34 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677887777777777776543
No 7
>d1q90d_ f.32.1.1 (D:) Subunit IV of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=16.53 E-value=1e+02 Score=24.32 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcC----ChhHHHHHHHHHHHHHHHHHHHhhch
Q 021217 253 LFAGAAITVLWALAAALVPAMQKG----SETARNLHIALNALNILLFIWQIPTG 302 (316)
Q Consensus 253 L~aGL~mv~Lml~SaAl~p~MqkG----r~~aR~LHI~LNilLLlLFlwQaiTG 302 (316)
-..|+.+.++.++...+.|.+++. +...|.+...+-.+..+.+.|=++-|
T Consensus 91 kl~GVi~~~~~i~~L~~lP~l~~~~~~~~~~~rp~~~~~f~~~~~~l~~Lgi~~ 144 (156)
T d1q90d_ 91 KLLGVLLMAAVPAGLITVPFIESINKFQNPYRRPIATILFLLGTLVAVWLGIGS 144 (156)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTTCSCCCCSGGGCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccCccccHHHHHHHHHHHHHHHHHHhcc
Confidence 367888888888888899998752 34556666665555555555544433
No 8
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=14.60 E-value=35 Score=21.92 Aligned_cols=15 Identities=47% Similarity=0.855 Sum_probs=10.8
Q ss_pred ehhhhhH-HHHHHHHH
Q 021217 134 VALVHPI-VMGSLLVY 148 (316)
Q Consensus 134 ~aliHPi-~M~~Lfa~ 148 (316)
+.|.-|+ +|+.||.|
T Consensus 18 v~wl~p~vvMglLFiy 33 (38)
T d1jb0i_ 18 VCWLMPTVVMGLLFLY 33 (38)
T ss_dssp HHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhee
Confidence 4577777 78888876
No 9
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=11.59 E-value=1.3e+02 Score=21.71 Aligned_cols=28 Identities=7% Similarity=0.217 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhhchH-HHHHHHh
Q 021217 283 LHIALNALNILLFIWQIPTGI-DIVFKVL 310 (316)
Q Consensus 283 LHI~LNilLLlLFlwQaiTG~-~IVqK~l 310 (316)
.-.++.++.++..++++.-|+ +|..+|+
T Consensus 54 ~~~il~~l~l~~~~~H~~lGl~~IieDYi 82 (113)
T d1nekd_ 54 FTKVFTLLALFSILIHAWIGMWQVLTDYV 82 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhHHHhc
Confidence 444555555566666666663 3334444
No 10
>d2rcda1 d.17.4.18 (A:1-127) Uncharacterized protein ECA3500 {Pectobacterium atrosepticum [TaxId: 29471]}
Probab=11.27 E-value=29 Score=24.28 Aligned_cols=9 Identities=56% Similarity=0.988 Sum_probs=7.1
Q ss_pred CCchhhhhh
Q 021217 1 MLPSKVNKS 9 (316)
Q Consensus 1 ~~~~~~~~~ 9 (316)
|||.+||++
T Consensus 1 ~~~~~v~~~ 9 (127)
T d2rcda1 1 MLPDDVNQA 9 (127)
T ss_dssp CCGGGBCCH
T ss_pred CCccccCCh
Confidence 788888864
Done!