Query 021218
Match_columns 316
No_of_seqs 321 out of 2068
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 08:32:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021218.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021218hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05225 ketol-acid reductoiso 100.0 1.9E-43 4.2E-48 350.1 16.2 219 71-313 1-228 (487)
2 COG0059 IlvC Ketol-acid reduct 100.0 2.9E-42 6.2E-47 325.6 17.3 189 106-314 14-205 (338)
3 PRK13403 ketol-acid reductoiso 100.0 1.9E-40 4E-45 318.3 18.4 189 105-314 11-202 (335)
4 PRK05479 ketol-acid reductoiso 100.0 1.7E-37 3.7E-42 299.4 18.2 190 105-314 12-204 (330)
5 TIGR00465 ilvC ketol-acid redu 100.0 3.4E-34 7.3E-39 275.1 19.6 187 108-314 1-190 (314)
6 PF07991 IlvN: Acetohydroxy ac 100.0 4.5E-33 9.7E-38 243.9 14.5 161 108-288 2-163 (165)
7 COG0287 TyrA Prephenate dehydr 99.9 6.4E-21 1.4E-25 180.7 16.3 170 112-299 4-176 (279)
8 PRK12491 pyrroline-5-carboxyla 99.9 1.5E-20 3.3E-25 177.0 16.1 153 112-293 3-161 (272)
9 COG0345 ProC Pyrroline-5-carbo 99.8 2E-20 4.4E-25 176.1 15.6 153 111-293 1-158 (266)
10 PRK07417 arogenate dehydrogena 99.8 1.1E-19 2.3E-24 170.9 14.7 171 112-298 1-171 (279)
11 PRK06545 prephenate dehydrogen 99.8 4.4E-19 9.6E-24 172.7 16.9 175 112-297 1-177 (359)
12 PLN02256 arogenate dehydrogena 99.8 1.7E-18 3.6E-23 165.9 18.0 167 109-300 35-210 (304)
13 PRK07679 pyrroline-5-carboxyla 99.8 3.4E-18 7.3E-23 160.6 16.8 158 112-298 4-167 (279)
14 PLN02688 pyrroline-5-carboxyla 99.8 9.6E-18 2.1E-22 155.4 17.4 153 112-293 1-158 (266)
15 PRK06928 pyrroline-5-carboxyla 99.8 5.8E-18 1.3E-22 159.4 15.9 155 111-293 1-161 (277)
16 PRK08507 prephenate dehydrogen 99.8 7.2E-18 1.6E-22 157.9 16.1 164 112-298 1-172 (275)
17 PRK08818 prephenate dehydrogen 99.8 4.7E-18 1E-22 166.9 14.5 151 112-298 5-159 (370)
18 PF02153 PDH: Prephenate dehyd 99.8 5.4E-18 1.2E-22 158.2 12.6 161 126-299 1-163 (258)
19 PRK07502 cyclohexadienyl dehyd 99.8 2.4E-17 5.2E-22 156.7 16.2 169 112-298 7-183 (307)
20 PRK08655 prephenate dehydrogen 99.7 5.3E-17 1.2E-21 162.4 16.7 163 112-298 1-167 (437)
21 PRK11880 pyrroline-5-carboxyla 99.7 6.4E-17 1.4E-21 150.0 15.4 148 111-286 2-153 (267)
22 PTZ00431 pyrroline carboxylate 99.7 7.5E-17 1.6E-21 150.4 15.9 154 112-303 4-161 (260)
23 PRK07634 pyrroline-5-carboxyla 99.7 5.9E-16 1.3E-20 141.5 15.5 150 112-288 5-160 (245)
24 PLN02712 arogenate dehydrogena 99.7 6.2E-16 1.3E-20 162.0 16.0 173 105-298 364-541 (667)
25 PLN02712 arogenate dehydrogena 99.7 1E-15 2.2E-20 160.3 17.0 166 112-299 53-225 (667)
26 PRK07680 late competence prote 99.7 1.9E-15 4E-20 141.5 15.1 147 112-286 1-153 (273)
27 PRK11199 tyrA bifunctional cho 99.6 3.7E-15 8.1E-20 146.3 14.7 150 110-299 97-247 (374)
28 PRK14806 bifunctional cyclohex 99.6 9.9E-15 2.1E-19 153.6 17.3 164 112-297 4-180 (735)
29 COG1052 LdhA Lactate dehydroge 99.6 4.2E-15 9.1E-20 143.8 13.3 168 85-276 117-299 (324)
30 PRK06476 pyrroline-5-carboxyla 99.6 7.4E-15 1.6E-19 136.2 13.5 142 112-288 1-147 (258)
31 COG0111 SerA Phosphoglycerate 99.6 1.4E-14 3.1E-19 140.1 12.5 176 85-286 117-308 (324)
32 PRK05808 3-hydroxybutyryl-CoA 99.5 9.7E-14 2.1E-18 130.3 15.0 154 111-289 3-179 (282)
33 PRK08410 2-hydroxyacid dehydro 99.5 3.2E-14 6.9E-19 136.6 11.8 164 86-277 115-295 (311)
34 PF02826 2-Hacid_dh_C: D-isome 99.5 1E-14 2.3E-19 128.9 7.5 156 86-267 11-177 (178)
35 PRK06130 3-hydroxybutyryl-CoA 99.5 1.6E-13 3.5E-18 130.3 15.9 154 111-288 4-175 (311)
36 PRK15409 bifunctional glyoxyla 99.5 6E-14 1.3E-18 135.6 12.9 164 85-275 117-295 (323)
37 PRK06932 glycerate dehydrogena 99.5 1.1E-13 2.4E-18 133.2 12.5 168 85-279 116-300 (314)
38 PLN02545 3-hydroxybutyryl-CoA 99.5 4.3E-13 9.4E-18 126.7 15.7 155 111-289 4-180 (295)
39 PRK13243 glyoxylate reductase; 99.5 1.5E-13 3.2E-18 133.2 12.8 156 85-268 118-290 (333)
40 PRK07574 formate dehydrogenase 99.5 3.4E-13 7.5E-18 133.3 15.3 167 85-276 165-344 (385)
41 PRK06436 glycerate dehydrogena 99.5 2E-13 4.4E-18 130.9 12.9 157 86-276 100-267 (303)
42 PLN03139 formate dehydrogenase 99.5 3.3E-13 7.2E-18 133.4 14.6 166 85-275 172-350 (386)
43 PRK06487 glycerate dehydrogena 99.5 2.9E-13 6.3E-18 130.4 11.6 162 86-277 118-296 (317)
44 PF03807 F420_oxidored: NADP o 99.4 2.9E-13 6.2E-18 106.9 8.3 89 113-211 1-93 (96)
45 PF03446 NAD_binding_2: NAD bi 99.4 4.9E-13 1.1E-17 116.4 10.2 152 111-287 1-156 (163)
46 PRK12480 D-lactate dehydrogena 99.4 1.2E-12 2.6E-17 126.9 13.9 157 86-268 121-298 (330)
47 PRK15469 ghrA bifunctional gly 99.4 7.1E-13 1.5E-17 127.6 12.2 155 86-268 114-277 (312)
48 TIGR01915 npdG NADPH-dependent 99.4 2.8E-12 6E-17 116.7 15.3 158 112-289 1-185 (219)
49 PLN02928 oxidoreductase family 99.4 9.6E-13 2.1E-17 128.3 12.4 171 86-277 137-323 (347)
50 KOG3124 Pyrroline-5-carboxylat 99.4 9.4E-13 2E-17 123.0 11.4 149 112-287 1-155 (267)
51 PRK08293 3-hydroxybutyryl-CoA 99.4 6.7E-12 1.5E-16 118.4 16.7 153 111-287 3-179 (287)
52 PRK11790 D-3-phosphoglycerate 99.4 1.2E-12 2.6E-17 130.2 11.8 157 86-268 127-294 (409)
53 TIGR00112 proC pyrroline-5-car 99.4 2.5E-12 5.5E-17 119.3 13.1 134 141-297 10-144 (245)
54 PRK07531 bifunctional 3-hydrox 99.4 4.9E-12 1.1E-16 128.4 16.3 151 111-288 4-176 (495)
55 KOG0069 Glyoxylate/hydroxypyru 99.4 5.6E-12 1.2E-16 122.4 14.8 167 85-278 135-314 (336)
56 PRK13581 D-3-phosphoglycerate 99.4 2E-12 4.3E-17 132.3 12.4 155 86-268 116-280 (526)
57 COG2084 MmsB 3-hydroxyisobutyr 99.4 3.8E-12 8.2E-17 121.4 13.4 146 112-287 1-157 (286)
58 TIGR01327 PGDH D-3-phosphoglyc 99.4 1.6E-12 3.4E-17 133.0 10.7 137 86-237 114-260 (525)
59 PRK09260 3-hydroxybutyryl-CoA 99.4 1.6E-11 3.6E-16 115.7 16.6 154 111-288 1-177 (288)
60 PRK06444 prephenate dehydrogen 99.4 5E-12 1.1E-16 114.6 12.3 123 112-299 1-126 (197)
61 PRK06035 3-hydroxyacyl-CoA deh 99.4 1.8E-11 3.9E-16 115.6 16.2 154 111-289 3-182 (291)
62 COG2085 Predicted dinucleotide 99.3 2.5E-11 5.5E-16 110.8 13.7 157 111-289 1-176 (211)
63 PRK08605 D-lactate dehydrogena 99.3 7.8E-12 1.7E-16 121.1 9.8 135 86-237 121-267 (332)
64 PRK07530 3-hydroxybutyryl-CoA 99.3 7.2E-11 1.6E-15 111.5 16.0 154 111-289 4-180 (292)
65 KOG0068 D-3-phosphoglycerate d 99.3 1.9E-11 4.2E-16 118.1 12.0 173 89-286 125-313 (406)
66 PRK00094 gpsA NAD(P)H-dependen 99.3 4E-11 8.6E-16 113.5 12.9 153 111-286 1-172 (325)
67 PLN02306 hydroxypyruvate reduc 99.3 1.5E-11 3.3E-16 121.6 10.3 170 85-275 137-330 (386)
68 PRK15059 tartronate semialdehy 99.3 6.4E-11 1.4E-15 112.7 14.2 151 112-290 1-158 (292)
69 PRK06129 3-hydroxyacyl-CoA deh 99.3 1.5E-10 3.3E-15 110.4 16.7 153 111-287 2-177 (308)
70 TIGR00872 gnd_rel 6-phosphoglu 99.3 7.1E-11 1.5E-15 112.4 13.9 147 112-287 1-154 (298)
71 PRK12490 6-phosphogluconate de 99.3 9.7E-11 2.1E-15 111.4 14.1 147 112-286 1-154 (299)
72 TIGR01505 tartro_sem_red 2-hyd 99.3 7.8E-11 1.7E-15 111.0 13.3 151 113-292 1-159 (291)
73 PF10727 Rossmann-like: Rossma 99.3 1.4E-11 3E-16 104.6 7.3 113 112-237 11-127 (127)
74 PRK15461 NADH-dependent gamma- 99.2 1.2E-10 2.6E-15 110.7 12.7 152 111-289 1-159 (296)
75 PRK07066 3-hydroxybutyryl-CoA 99.2 3.7E-10 8.1E-15 109.3 16.3 154 111-288 7-179 (321)
76 PRK11559 garR tartronate semia 99.2 3.6E-10 7.7E-15 106.6 14.4 150 112-289 3-160 (296)
77 PRK11861 bifunctional prephena 99.1 1.1E-10 2.5E-15 122.6 9.4 115 182-299 1-116 (673)
78 TIGR01692 HIBADH 3-hydroxyisob 99.1 5E-10 1.1E-14 105.8 12.8 149 116-289 1-154 (288)
79 PRK09599 6-phosphogluconate de 99.1 9.9E-10 2.1E-14 104.5 14.5 147 112-286 1-154 (301)
80 PRK12557 H(2)-dependent methyl 99.1 1.4E-09 3E-14 106.2 15.7 149 123-294 32-194 (342)
81 TIGR01724 hmd_rel H2-forming N 99.1 9.2E-10 2E-14 106.5 14.1 146 123-287 32-188 (341)
82 PRK08268 3-hydroxy-acyl-CoA de 99.1 1.2E-09 2.7E-14 111.5 15.9 155 110-289 6-183 (507)
83 PRK15438 erythronate-4-phospha 99.1 1.4E-10 3E-15 114.6 8.2 151 106-287 112-281 (378)
84 PLN02350 phosphogluconate dehy 99.1 4.4E-10 9.6E-15 114.5 12.0 153 111-287 6-168 (493)
85 PTZ00142 6-phosphogluconate de 99.1 9.9E-10 2.1E-14 111.4 13.8 151 111-287 1-162 (470)
86 PRK07819 3-hydroxybutyryl-CoA 99.1 3.8E-09 8.2E-14 100.3 15.9 153 111-288 5-182 (286)
87 TIGR00873 gnd 6-phosphoglucona 99.1 1.6E-09 3.5E-14 109.7 13.4 147 113-287 1-159 (467)
88 PRK00257 erythronate-4-phospha 99.1 2.6E-10 5.6E-15 112.8 7.4 152 105-287 111-281 (381)
89 KOG2380 Prephenate dehydrogena 99.1 2.5E-09 5.5E-14 103.9 13.9 164 112-299 53-225 (480)
90 PRK14618 NAD(P)H-dependent gly 99.1 1E-09 2.2E-14 105.3 10.8 148 112-286 5-171 (328)
91 PRK12439 NAD(P)H-dependent gly 99.0 1.3E-09 2.9E-14 105.7 11.3 122 111-243 7-147 (341)
92 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.0 4.2E-09 9E-14 107.6 15.3 154 111-289 5-181 (503)
93 PF02737 3HCDH_N: 3-hydroxyacy 99.0 1.5E-08 3.2E-13 90.3 15.2 149 113-286 1-172 (180)
94 TIGR03026 NDP-sugDHase nucleot 99.0 1E-08 2.2E-13 101.6 14.7 161 112-295 1-202 (411)
95 PLN02858 fructose-bisphosphate 98.9 1E-08 2.2E-13 115.3 14.2 152 112-288 325-483 (1378)
96 PRK11064 wecC UDP-N-acetyl-D-m 98.9 4.4E-08 9.5E-13 97.7 16.5 163 111-295 3-206 (415)
97 PF01210 NAD_Gly3P_dh_N: NAD-d 98.9 7.9E-09 1.7E-13 89.6 8.9 95 113-214 1-106 (157)
98 PRK12921 2-dehydropantoate 2-r 98.9 5.7E-08 1.2E-12 91.3 15.3 157 112-290 1-174 (305)
99 PRK14619 NAD(P)H-dependent gly 98.9 9.1E-09 2E-13 98.2 10.0 79 109-212 3-82 (308)
100 KOG0409 Predicted dehydrogenas 98.9 1.6E-08 3.5E-13 96.9 11.0 151 112-289 36-194 (327)
101 PTZ00075 Adenosylhomocysteinas 98.8 2.3E-08 5E-13 101.3 11.5 94 106-215 250-344 (476)
102 PLN02858 fructose-bisphosphate 98.8 5.2E-08 1.1E-12 109.7 14.6 151 112-287 5-162 (1378)
103 PRK06522 2-dehydropantoate 2-r 98.8 1.6E-07 3.4E-12 88.1 15.7 102 112-221 1-111 (304)
104 TIGR02853 spore_dpaA dipicolin 98.8 1.7E-08 3.6E-13 96.3 8.9 115 86-213 125-241 (287)
105 cd01065 NAD_bind_Shikimate_DH 98.8 5.5E-09 1.2E-13 88.7 4.9 119 107-237 16-140 (155)
106 PRK08229 2-dehydropantoate 2-r 98.8 1.3E-07 2.9E-12 90.6 14.8 102 111-221 2-118 (341)
107 PF00670 AdoHcyase_NAD: S-aden 98.7 3.3E-08 7.1E-13 87.3 7.2 94 106-215 19-113 (162)
108 PRK14620 NAD(P)H-dependent gly 98.7 1.7E-07 3.6E-12 89.9 12.2 97 112-215 1-110 (326)
109 PRK11730 fadB multifunctional 98.7 3.8E-07 8.3E-12 96.9 15.6 156 109-289 311-489 (715)
110 COG1250 FadB 3-hydroxyacyl-CoA 98.7 4.5E-07 9.8E-12 87.6 14.2 152 111-286 3-176 (307)
111 TIGR02437 FadB fatty oxidation 98.7 4.5E-07 9.8E-12 96.3 15.1 155 110-289 312-489 (714)
112 TIGR02441 fa_ox_alpha_mit fatt 98.6 4E-07 8.7E-12 97.0 14.4 155 110-288 334-510 (737)
113 TIGR02440 FadJ fatty oxidation 98.6 5.9E-07 1.3E-11 95.3 15.6 155 110-289 303-481 (699)
114 PRK11154 fadJ multifunctional 98.6 9.7E-07 2.1E-11 93.7 15.7 154 111-289 309-486 (708)
115 cd00401 AdoHcyase S-adenosyl-L 98.6 1.1E-06 2.5E-11 87.9 14.6 93 106-214 198-291 (413)
116 PRK06249 2-dehydropantoate 2-r 98.6 3.2E-06 6.9E-11 80.9 16.9 157 112-291 6-184 (313)
117 PRK15182 Vi polysaccharide bio 98.5 1.9E-06 4.2E-11 86.5 15.4 94 112-214 7-122 (425)
118 PRK08306 dipicolinate synthase 98.5 5.1E-07 1.1E-11 86.4 10.0 95 106-213 148-242 (296)
119 COG1023 Gnd Predicted 6-phosph 98.5 1.3E-06 2.9E-11 81.8 11.8 146 112-286 1-154 (300)
120 TIGR00936 ahcY adenosylhomocys 98.5 1.1E-06 2.4E-11 87.9 11.1 92 107-214 192-284 (406)
121 PRK05476 S-adenosyl-L-homocyst 98.4 1.3E-06 2.8E-11 87.9 10.5 93 107-215 209-302 (425)
122 PLN02494 adenosylhomocysteinas 98.4 1.6E-06 3.5E-11 88.1 10.6 91 107-213 251-342 (477)
123 COG0240 GpsA Glycerol-3-phosph 98.4 3.4E-06 7.5E-11 82.0 12.1 150 111-282 1-167 (329)
124 PTZ00345 glycerol-3-phosphate 98.4 1.2E-06 2.7E-11 86.4 9.2 98 112-215 12-133 (365)
125 TIGR03376 glycerol3P_DH glycer 98.4 2.1E-06 4.5E-11 84.1 10.3 97 113-215 1-120 (342)
126 PRK14194 bifunctional 5,10-met 98.4 1.2E-06 2.7E-11 84.4 8.4 76 106-212 155-231 (301)
127 PRK13304 L-aspartate dehydroge 98.3 2.4E-06 5.1E-11 80.5 9.6 82 111-200 1-83 (265)
128 PRK13302 putative L-aspartate 98.3 3.9E-06 8.5E-11 79.4 9.8 92 112-213 7-100 (271)
129 PRK09287 6-phosphogluconate de 98.3 6.9E-06 1.5E-10 83.4 11.3 138 122-287 1-150 (459)
130 PLN02353 probable UDP-glucose 98.2 1.9E-05 4.2E-10 80.4 14.2 166 111-295 1-210 (473)
131 cd05213 NAD_bind_Glutamyl_tRNA 98.2 5.8E-06 1.2E-10 79.5 9.1 97 107-212 175-273 (311)
132 PRK15057 UDP-glucose 6-dehydro 98.2 7.9E-06 1.7E-10 81.2 9.5 93 112-215 1-120 (388)
133 PRK14188 bifunctional 5,10-met 98.2 6E-06 1.3E-10 79.5 8.2 75 107-212 155-230 (296)
134 COG4007 Predicted dehydrogenas 98.1 2.5E-05 5.4E-10 74.0 11.6 157 111-286 1-188 (340)
135 COG1893 ApbA Ketopantoate redu 98.1 0.0001 2.2E-09 71.1 15.6 156 112-288 1-171 (307)
136 PF03721 UDPG_MGDP_dh_N: UDP-g 98.1 9.4E-06 2E-10 72.8 7.4 95 112-214 1-122 (185)
137 smart00859 Semialdhyde_dh Semi 98.1 1.3E-05 2.7E-10 66.2 7.6 96 113-214 1-101 (122)
138 PRK08269 3-hydroxybutyryl-CoA 98.1 0.00013 2.8E-09 70.5 15.4 145 122-289 1-176 (314)
139 cd01075 NAD_bind_Leu_Phe_Val_D 98.1 9E-06 1.9E-10 73.6 6.7 92 105-212 23-115 (200)
140 PRK05708 2-dehydropantoate 2-r 98.0 6.3E-05 1.4E-09 72.0 12.7 103 112-221 3-115 (305)
141 PF01408 GFO_IDH_MocA: Oxidore 98.0 3.2E-05 6.9E-10 62.8 9.1 82 112-201 1-85 (120)
142 PF02558 ApbA: Ketopantoate re 98.0 3.1E-05 6.8E-10 65.5 9.3 112 114-237 1-124 (151)
143 PF01488 Shikimate_DH: Shikima 98.0 7.3E-06 1.6E-10 69.5 4.6 96 106-212 8-109 (135)
144 PRK14179 bifunctional 5,10-met 98.0 1.9E-05 4.2E-10 75.6 7.8 76 106-212 154-230 (284)
145 COG0362 Gnd 6-phosphogluconate 98.0 4.6E-05 1E-09 75.8 10.0 148 112-287 4-163 (473)
146 PRK00045 hemA glutamyl-tRNA re 97.9 2.5E-05 5.5E-10 78.1 7.1 97 107-212 179-280 (423)
147 TIGR00518 alaDH alanine dehydr 97.8 3.9E-05 8.5E-10 75.7 7.2 98 108-212 165-267 (370)
148 PRK06141 ornithine cyclodeamin 97.8 4.2E-05 9.2E-10 73.7 6.9 86 109-209 124-216 (314)
149 COG0677 WecC UDP-N-acetyl-D-ma 97.8 0.00052 1.1E-08 68.5 14.1 157 112-292 10-206 (436)
150 TIGR02371 ala_DH_arch alanine 97.8 7.4E-05 1.6E-09 72.4 7.8 93 112-214 129-224 (325)
151 PRK00048 dihydrodipicolinate r 97.8 0.00015 3.3E-09 67.9 9.7 160 111-286 1-171 (257)
152 TIGR01035 hemA glutamyl-tRNA r 97.8 5.5E-05 1.2E-09 75.7 6.8 98 106-212 176-277 (417)
153 PRK14189 bifunctional 5,10-met 97.7 7.2E-05 1.6E-09 71.7 7.1 76 106-212 154-230 (285)
154 cd01080 NAD_bind_m-THF_DH_Cycl 97.7 0.00011 2.5E-09 65.1 7.5 76 106-212 40-116 (168)
155 PRK13303 L-aspartate dehydroge 97.7 0.0003 6.5E-09 66.3 10.5 81 111-200 1-83 (265)
156 KOG2304 3-hydroxyacyl-CoA dehy 97.7 0.00012 2.6E-09 68.5 6.9 154 111-288 11-192 (298)
157 PLN00203 glutamyl-tRNA reducta 97.6 0.0002 4.4E-09 73.8 9.4 99 107-212 263-369 (519)
158 PRK14175 bifunctional 5,10-met 97.6 0.00019 4.1E-09 68.9 8.2 77 106-213 154-231 (286)
159 PF01118 Semialdhyde_dh: Semia 97.6 0.00019 4.1E-09 59.5 6.9 92 113-214 1-99 (121)
160 COG0499 SAM1 S-adenosylhomocys 97.6 0.00018 4E-09 70.9 7.2 94 106-215 205-299 (420)
161 PRK07340 ornithine cyclodeamin 97.6 0.00022 4.8E-09 68.5 7.7 93 109-215 124-220 (304)
162 cd01078 NAD_bind_H4MPT_DH NADP 97.5 0.00018 4E-09 63.9 6.5 98 106-212 24-129 (194)
163 COG0373 HemA Glutamyl-tRNA red 97.5 0.00032 6.9E-09 70.5 8.5 97 106-212 174-274 (414)
164 TIGR00036 dapB dihydrodipicoli 97.5 0.00091 2E-08 63.2 11.1 162 111-286 1-181 (266)
165 KOG1370 S-adenosylhomocysteine 97.5 0.00057 1.2E-08 66.4 9.7 126 72-215 179-304 (434)
166 PRK04207 glyceraldehyde-3-phos 97.5 0.00087 1.9E-08 65.6 11.0 96 111-214 1-111 (341)
167 PRK06223 malate dehydrogenase; 97.5 0.0011 2.4E-08 63.1 11.0 69 111-186 2-78 (307)
168 PF01113 DapB_N: Dihydrodipico 97.4 0.00044 9.5E-09 57.9 6.9 94 112-217 1-104 (124)
169 COG1712 Predicted dinucleotide 97.4 0.00094 2E-08 62.3 9.0 92 112-213 1-93 (255)
170 PRK08618 ornithine cyclodeamin 97.4 0.00053 1.1E-08 66.4 7.7 91 112-214 128-223 (325)
171 TIGR00561 pntA NAD(P) transhyd 97.3 0.00067 1.5E-08 69.9 8.4 96 109-212 163-284 (511)
172 PRK13940 glutamyl-tRNA reducta 97.3 0.00039 8.4E-09 69.9 6.4 76 106-190 177-254 (414)
173 TIGR01921 DAP-DH diaminopimela 97.3 0.00073 1.6E-08 66.0 8.1 77 112-198 4-80 (324)
174 PRK14192 bifunctional 5,10-met 97.3 0.00075 1.6E-08 64.6 7.8 76 106-212 155-231 (283)
175 PRK10792 bifunctional 5,10-met 97.3 0.00099 2.1E-08 64.0 8.5 76 106-212 155-231 (285)
176 TIGR03215 ac_ald_DH_ac acetald 97.3 0.0024 5.3E-08 61.3 11.2 91 112-213 2-96 (285)
177 PRK00258 aroE shikimate 5-dehy 97.3 0.00035 7.7E-09 66.0 5.4 98 106-211 119-220 (278)
178 cd05212 NAD_bind_m-THF_DH_Cycl 97.3 0.00094 2E-08 57.7 7.5 76 106-212 24-100 (140)
179 PRK07589 ornithine cyclodeamin 97.3 0.00063 1.4E-08 66.9 7.2 94 112-214 130-227 (346)
180 TIGR02992 ectoine_eutC ectoine 97.3 0.0006 1.3E-08 66.1 6.9 89 112-212 130-224 (326)
181 PRK06718 precorrin-2 dehydroge 97.3 0.0014 3.1E-08 59.5 9.0 89 101-199 2-91 (202)
182 TIGR00507 aroE shikimate 5-deh 97.3 0.00034 7.5E-09 65.7 5.1 94 108-212 115-214 (270)
183 COG0686 Ald Alanine dehydrogen 97.3 0.00075 1.6E-08 65.7 7.4 131 72-212 130-268 (371)
184 PRK00961 H(2)-dependent methyl 97.3 0.0015 3.3E-08 62.6 9.2 108 158-287 125-237 (342)
185 PF02882 THF_DHG_CYH_C: Tetrah 97.3 0.0015 3.2E-08 57.8 8.5 77 106-213 32-109 (160)
186 PRK00436 argC N-acetyl-gamma-g 97.2 0.002 4.2E-08 63.0 9.9 95 111-213 2-100 (343)
187 PRK08300 acetaldehyde dehydrog 97.2 0.0026 5.5E-08 61.6 10.5 91 112-213 5-102 (302)
188 cd05191 NAD_bind_amino_acid_DH 97.2 0.0019 4E-08 50.5 7.8 67 106-212 19-86 (86)
189 cd05311 NAD_bind_2_malic_enz N 97.2 0.0022 4.8E-08 59.2 9.5 94 106-212 21-128 (226)
190 PRK06046 alanine dehydrogenase 97.2 0.00096 2.1E-08 64.7 7.4 91 112-214 130-225 (326)
191 KOG2711 Glycerol-3-phosphate d 97.2 0.0059 1.3E-07 60.0 12.6 180 112-303 22-251 (372)
192 PRK06407 ornithine cyclodeamin 97.2 0.00088 1.9E-08 64.5 6.9 92 112-214 118-214 (301)
193 TIGR01723 hmd_TIGR 5,10-methen 97.2 0.0027 5.8E-08 61.0 9.8 108 158-287 123-235 (340)
194 TIGR01763 MalateDH_bact malate 97.1 0.0029 6.4E-08 60.9 10.0 66 112-187 2-78 (305)
195 COG2423 Predicted ornithine cy 97.1 0.0013 2.9E-08 64.3 7.6 92 112-213 131-226 (330)
196 COG1748 LYS9 Saccharopine dehy 97.1 0.0019 4.1E-08 64.5 8.6 79 111-196 1-86 (389)
197 COG0673 MviM Predicted dehydro 97.1 0.0018 3.9E-08 61.5 8.1 79 111-198 3-87 (342)
198 TIGR00745 apbA_panE 2-dehydrop 97.1 0.017 3.6E-07 53.8 14.3 144 121-288 1-162 (293)
199 PRK09310 aroDE bifunctional 3- 97.1 0.0014 3.1E-08 66.8 7.3 76 106-191 328-403 (477)
200 PRK06823 ornithine cyclodeamin 97.0 0.0015 3.1E-08 63.4 6.9 93 112-215 129-225 (315)
201 KOG2305 3-hydroxyacyl-CoA dehy 97.0 0.0033 7.2E-08 59.1 8.7 153 112-287 4-179 (313)
202 PRK08291 ectoine utilization p 97.0 0.0016 3.5E-08 63.1 6.8 90 112-212 133-227 (330)
203 PRK13301 putative L-aspartate 97.0 0.0047 1E-07 58.8 9.7 81 112-200 3-84 (267)
204 cd05291 HicDH_like L-2-hydroxy 97.0 0.0052 1.1E-07 58.9 10.1 67 112-188 1-78 (306)
205 PF02423 OCD_Mu_crystall: Orni 97.0 0.00076 1.7E-08 65.1 4.4 94 112-214 129-226 (313)
206 PRK14191 bifunctional 5,10-met 97.0 0.0021 4.6E-08 61.7 7.3 76 106-212 153-229 (285)
207 COG5495 Uncharacterized conser 97.0 0.0072 1.6E-07 56.8 10.3 153 112-291 11-168 (289)
208 cd01079 NAD_bind_m-THF_DH NAD 96.9 0.0027 5.8E-08 58.0 7.2 93 106-213 58-157 (197)
209 TIGR01850 argC N-acetyl-gamma- 96.9 0.0049 1.1E-07 60.4 9.7 95 112-214 1-101 (346)
210 cd05292 LDH_2 A subgroup of L- 96.9 0.0053 1.1E-07 59.1 9.6 70 112-188 1-77 (308)
211 PRK06719 precorrin-2 dehydroge 96.9 0.0032 7E-08 55.1 7.4 87 101-200 5-92 (157)
212 PF02254 TrkA_N: TrkA-N domain 96.9 0.0095 2.1E-07 48.0 9.7 93 114-213 1-98 (116)
213 PRK09496 trkA potassium transp 96.9 0.0062 1.3E-07 60.5 10.1 80 112-198 1-85 (453)
214 PTZ00117 malate dehydrogenase; 96.9 0.0077 1.7E-07 58.3 10.4 71 108-186 3-81 (319)
215 PRK14178 bifunctional 5,10-met 96.9 0.0033 7.1E-08 60.3 7.4 76 106-212 148-224 (279)
216 PRK12549 shikimate 5-dehydroge 96.8 0.0029 6.2E-08 60.4 6.9 96 106-211 123-226 (284)
217 PF01262 AlaDh_PNT_C: Alanine 96.8 0.0015 3.2E-08 57.3 4.5 100 105-212 15-139 (168)
218 KOG2653 6-phosphogluconate deh 96.8 0.0017 3.6E-08 64.3 5.2 91 112-212 7-105 (487)
219 COG0569 TrkA K+ transport syst 96.8 0.0065 1.4E-07 56.1 8.9 82 112-199 1-87 (225)
220 PF00056 Ldh_1_N: lactate/mala 96.8 0.0047 1E-07 52.9 7.4 69 112-186 1-77 (141)
221 PRK14176 bifunctional 5,10-met 96.8 0.005 1.1E-07 59.2 8.3 77 106-213 160-237 (287)
222 PRK14982 acyl-ACP reductase; P 96.7 0.0038 8.2E-08 61.4 7.0 93 106-212 151-246 (340)
223 PRK09424 pntA NAD(P) transhydr 96.7 0.0059 1.3E-07 63.0 8.6 97 108-212 163-285 (509)
224 PRK14183 bifunctional 5,10-met 96.7 0.0053 1.2E-07 58.9 7.6 76 106-212 153-229 (281)
225 PRK14186 bifunctional 5,10-met 96.7 0.0057 1.2E-07 59.1 7.8 77 106-213 154-231 (297)
226 PRK06199 ornithine cyclodeamin 96.7 0.0052 1.1E-07 61.1 7.8 93 110-210 154-257 (379)
227 PRK14173 bifunctional 5,10-met 96.7 0.006 1.3E-07 58.7 7.8 76 106-212 151-227 (287)
228 PRK14177 bifunctional 5,10-met 96.7 0.0064 1.4E-07 58.5 7.9 76 106-212 155-231 (284)
229 PRK14172 bifunctional 5,10-met 96.6 0.0068 1.5E-07 58.1 7.8 76 106-212 154-230 (278)
230 PRK14169 bifunctional 5,10-met 96.6 0.007 1.5E-07 58.1 7.8 77 106-213 152-229 (282)
231 COG0190 FolD 5,10-methylene-te 96.6 0.0067 1.5E-07 58.2 7.5 76 106-212 152-228 (283)
232 PRK11579 putative oxidoreducta 96.6 0.011 2.5E-07 57.1 9.3 78 112-200 5-86 (346)
233 PRK10206 putative oxidoreducta 96.6 0.0084 1.8E-07 58.4 8.3 83 111-200 1-86 (344)
234 PF13241 NAD_binding_7: Putati 96.6 0.011 2.4E-07 47.8 7.7 77 106-197 3-79 (103)
235 cd05211 NAD_bind_Glu_Leu_Phe_V 96.6 0.0066 1.4E-07 55.9 7.1 80 106-192 19-111 (217)
236 TIGR01470 cysG_Nterm siroheme 96.6 0.019 4.1E-07 52.4 10.0 83 101-193 1-84 (205)
237 cd01339 LDH-like_MDH L-lactate 96.5 0.011 2.3E-07 56.5 8.6 66 114-186 1-74 (300)
238 PRK14170 bifunctional 5,10-met 96.5 0.0081 1.8E-07 57.8 7.7 76 106-212 153-229 (284)
239 PLN02516 methylenetetrahydrofo 96.5 0.0077 1.7E-07 58.3 7.6 76 106-212 163-239 (299)
240 PRK14190 bifunctional 5,10-met 96.5 0.0082 1.8E-07 57.7 7.7 76 106-212 154-230 (284)
241 TIGR01809 Shik-DH-AROM shikima 96.5 0.0056 1.2E-07 58.3 6.4 77 107-190 122-202 (282)
242 PRK14180 bifunctional 5,10-met 96.5 0.0094 2E-07 57.3 7.8 76 106-212 154-230 (282)
243 PRK14171 bifunctional 5,10-met 96.5 0.0096 2.1E-07 57.4 7.8 76 106-212 155-231 (288)
244 PTZ00082 L-lactate dehydrogena 96.5 0.019 4E-07 55.9 9.9 66 112-186 7-82 (321)
245 PLN02616 tetrahydrofolate dehy 96.5 0.0084 1.8E-07 59.4 7.4 76 106-212 227-303 (364)
246 COG1004 Ugd Predicted UDP-gluc 96.5 0.013 2.9E-07 58.7 8.8 93 112-212 1-120 (414)
247 TIGR01546 GAPDH-II_archae glyc 96.5 0.015 3.3E-07 57.0 9.1 90 114-209 1-105 (333)
248 PRK00066 ldh L-lactate dehydro 96.4 0.02 4.3E-07 55.5 9.6 72 109-187 5-82 (315)
249 PRK14193 bifunctional 5,10-met 96.4 0.011 2.3E-07 57.0 7.6 76 106-212 154-232 (284)
250 PLN02897 tetrahydrofolate dehy 96.4 0.011 2.3E-07 58.4 7.6 76 106-212 210-286 (345)
251 PRK14166 bifunctional 5,10-met 96.4 0.012 2.6E-07 56.6 7.7 76 106-212 153-229 (282)
252 PRK03659 glutathione-regulated 96.4 0.016 3.5E-07 60.7 9.4 87 112-205 401-491 (601)
253 TIGR02354 thiF_fam2 thiamine b 96.4 0.015 3.3E-07 52.8 8.0 101 105-214 16-146 (200)
254 PRK14187 bifunctional 5,10-met 96.4 0.012 2.6E-07 56.8 7.7 76 106-212 156-232 (294)
255 PRK00683 murD UDP-N-acetylmura 96.3 0.014 3E-07 58.1 8.2 71 112-193 4-74 (418)
256 PRK14182 bifunctional 5,10-met 96.3 0.014 3E-07 56.1 7.9 76 106-212 153-229 (282)
257 COG0136 Asd Aspartate-semialde 96.3 0.054 1.2E-06 53.2 11.9 156 112-296 2-161 (334)
258 COG0169 AroE Shikimate 5-dehyd 96.3 0.0085 1.8E-07 57.5 6.3 96 106-211 122-225 (283)
259 PRK05472 redox-sensing transcr 96.3 0.0056 1.2E-07 55.7 4.8 81 112-199 85-167 (213)
260 PRK04148 hypothetical protein; 96.3 0.046 9.9E-07 47.1 10.1 97 108-213 15-112 (134)
261 PRK10669 putative cation:proto 96.3 0.021 4.5E-07 59.1 9.5 78 107-193 415-496 (558)
262 PF03435 Saccharop_dh: Sacchar 96.2 0.01 2.2E-07 58.1 6.6 119 114-243 1-129 (386)
263 PRK09496 trkA potassium transp 96.2 0.045 9.7E-07 54.3 11.2 96 108-211 229-330 (453)
264 cd00650 LDH_MDH_like NAD-depen 96.2 0.024 5.1E-07 53.0 8.7 65 114-186 1-78 (263)
265 PF13380 CoA_binding_2: CoA bi 96.2 0.036 7.9E-07 46.0 8.8 85 112-213 1-89 (116)
266 PRK14184 bifunctional 5,10-met 96.2 0.011 2.4E-07 56.9 6.2 76 106-212 153-233 (286)
267 PRK14174 bifunctional 5,10-met 96.2 0.016 3.5E-07 56.0 7.4 80 106-212 155-235 (295)
268 PF02629 CoA_binding: CoA bind 96.1 0.0084 1.8E-07 47.9 4.5 79 112-200 4-84 (96)
269 PF13460 NAD_binding_10: NADH( 96.1 0.057 1.2E-06 46.4 10.1 68 114-190 1-72 (183)
270 cd01076 NAD_bind_1_Glu_DH NAD( 96.1 0.013 2.9E-07 54.3 6.2 86 106-198 27-127 (227)
271 PLN02819 lysine-ketoglutarate 96.0 0.017 3.7E-07 64.2 7.8 87 109-198 567-668 (1042)
272 PRK14185 bifunctional 5,10-met 96.0 0.022 4.8E-07 55.0 7.6 76 106-212 153-233 (293)
273 PRK03562 glutathione-regulated 96.0 0.032 7E-07 58.8 9.4 87 112-205 401-491 (621)
274 cd01338 MDH_choloroplast_like 95.8 0.035 7.5E-07 54.1 8.1 66 112-187 3-87 (322)
275 PRK01710 murD UDP-N-acetylmura 95.8 0.027 5.9E-07 56.7 7.3 72 105-185 9-84 (458)
276 PRK00676 hemA glutamyl-tRNA re 95.7 0.032 6.9E-07 55.0 7.5 64 106-186 170-234 (338)
277 TIGR02356 adenyl_thiF thiazole 95.7 0.064 1.4E-06 48.5 9.0 88 105-199 16-132 (202)
278 PF05368 NmrA: NmrA-like famil 95.7 0.066 1.4E-06 48.2 8.9 69 114-188 1-74 (233)
279 cd05297 GH4_alpha_glucosidase_ 95.7 0.018 4E-07 57.9 5.8 74 112-188 1-84 (423)
280 PRK00421 murC UDP-N-acetylmura 95.7 0.05 1.1E-06 54.8 8.9 72 105-186 2-74 (461)
281 PRK12749 quinate/shikimate deh 95.6 0.03 6.6E-07 53.6 6.6 99 106-212 120-233 (288)
282 PRK05442 malate dehydrogenase; 95.6 0.053 1.2E-06 52.9 8.3 67 111-187 4-89 (326)
283 PRK14181 bifunctional 5,10-met 95.6 0.046 9.9E-07 52.7 7.7 80 106-212 149-229 (287)
284 PRK14168 bifunctional 5,10-met 95.5 0.045 9.8E-07 53.0 7.4 80 106-212 157-237 (297)
285 PRK11863 N-acetyl-gamma-glutam 95.5 0.073 1.6E-06 51.9 8.8 78 112-213 3-82 (313)
286 cd05293 LDH_1 A subgroup of L- 95.4 0.034 7.3E-07 53.9 6.4 68 112-186 4-79 (312)
287 TIGR02717 AcCoA-syn-alpha acet 95.4 0.065 1.4E-06 54.3 8.6 87 112-215 8-100 (447)
288 PF03720 UDPG_MGDP_dh_C: UDP-g 95.4 0.069 1.5E-06 43.4 7.2 82 121-214 17-103 (106)
289 COG4074 Mth H2-forming N5,N10- 95.4 0.086 1.9E-06 49.6 8.5 108 158-284 123-232 (343)
290 TIGR01759 MalateDH-SF1 malate 95.3 0.093 2E-06 51.2 9.2 70 112-187 4-88 (323)
291 PRK00141 murD UDP-N-acetylmura 95.3 0.05 1.1E-06 55.3 7.4 71 106-185 11-81 (473)
292 TIGR01851 argC_other N-acetyl- 95.3 0.11 2.3E-06 50.7 9.2 79 112-213 2-81 (310)
293 PRK12548 shikimate 5-dehydroge 95.3 0.046 9.9E-07 52.2 6.6 98 106-211 122-235 (289)
294 PRK12475 thiamine/molybdopteri 95.2 0.12 2.6E-06 50.6 9.6 90 105-201 19-139 (338)
295 PLN02968 Probable N-acetyl-gam 95.2 0.059 1.3E-06 53.8 7.4 94 112-214 39-136 (381)
296 cd00300 LDH_like L-lactate deh 95.2 0.11 2.3E-06 49.9 8.9 69 114-188 1-76 (300)
297 PRK14874 aspartate-semialdehyd 95.2 0.073 1.6E-06 51.9 7.8 90 111-213 1-95 (334)
298 PRK14106 murD UDP-N-acetylmura 95.1 0.1 2.2E-06 52.0 9.0 73 107-188 2-78 (450)
299 cd01336 MDH_cytoplasmic_cytoso 95.1 0.096 2.1E-06 51.0 8.3 75 112-186 3-86 (325)
300 cd08230 glucose_DH Glucose deh 95.0 0.27 5.7E-06 47.2 11.0 94 108-211 171-268 (355)
301 PRK01438 murD UDP-N-acetylmura 95.0 0.099 2.1E-06 52.7 8.4 71 106-186 12-86 (480)
302 PRK14167 bifunctional 5,10-met 94.9 0.084 1.8E-06 51.1 7.4 80 106-212 153-233 (297)
303 PRK05671 aspartate-semialdehyd 94.9 0.093 2E-06 51.5 7.9 87 111-213 4-98 (336)
304 PTZ00325 malate dehydrogenase; 94.9 0.056 1.2E-06 52.7 6.3 76 106-188 4-86 (321)
305 PLN02383 aspartate semialdehyd 94.9 0.073 1.6E-06 52.3 7.1 86 112-213 8-101 (344)
306 COG1064 AdhP Zn-dependent alco 94.9 0.11 2.4E-06 51.2 8.3 92 108-211 165-258 (339)
307 PRK03369 murD UDP-N-acetylmura 94.9 0.13 2.9E-06 52.4 9.2 71 106-186 8-78 (488)
308 PRK06270 homoserine dehydrogen 94.8 0.099 2.2E-06 51.1 7.8 99 112-210 3-123 (341)
309 TIGR01758 MDH_euk_cyt malate d 94.8 0.097 2.1E-06 51.0 7.5 69 113-187 1-84 (324)
310 KOG0067 Transcription factor C 94.8 0.019 4.2E-07 57.1 2.6 97 106-215 174-273 (435)
311 COG0002 ArgC Acetylglutamate s 94.7 0.21 4.6E-06 49.4 9.6 95 111-213 2-102 (349)
312 PRK01390 murD UDP-N-acetylmura 94.7 0.086 1.9E-06 52.9 7.2 67 106-184 5-71 (460)
313 COG2344 AT-rich DNA-binding pr 94.7 0.055 1.2E-06 49.4 5.1 79 112-199 85-167 (211)
314 cd00757 ThiF_MoeB_HesA_family 94.7 0.12 2.7E-06 47.4 7.5 28 105-133 16-43 (228)
315 KOG0022 Alcohol dehydrogenase, 94.6 0.06 1.3E-06 52.8 5.4 51 107-164 190-240 (375)
316 cd05294 LDH-like_MDH_nadp A la 94.6 0.19 4.2E-06 48.5 9.0 69 112-187 1-81 (309)
317 COG1063 Tdh Threonine dehydrog 94.6 0.34 7.4E-06 47.3 10.8 94 108-211 167-268 (350)
318 PLN03075 nicotianamine synthas 94.6 0.15 3.2E-06 49.4 8.1 120 85-211 98-232 (296)
319 PRK06349 homoserine dehydrogen 94.5 0.11 2.4E-06 52.3 7.5 91 112-210 4-102 (426)
320 cd05290 LDH_3 A subgroup of L- 94.5 0.099 2.2E-06 50.6 6.7 69 113-187 1-77 (307)
321 PF10100 DUF2338: Uncharacteri 94.5 1.3 2.9E-05 44.8 14.7 169 111-299 1-208 (429)
322 COG0026 PurK Phosphoribosylami 94.4 0.06 1.3E-06 53.6 5.2 67 111-184 1-68 (375)
323 PLN02602 lactate dehydrogenase 94.4 0.11 2.4E-06 51.3 7.0 66 112-186 38-113 (350)
324 cd01492 Aos1_SUMO Ubiquitin ac 94.4 0.19 4.2E-06 45.4 8.1 36 105-147 16-52 (197)
325 PF04016 DUF364: Domain of unk 94.4 0.076 1.6E-06 46.1 5.2 90 105-212 6-95 (147)
326 TIGR01745 asd_gamma aspartate- 94.4 0.22 4.7E-06 49.6 9.0 90 112-214 1-99 (366)
327 PF00185 OTCace: Aspartate/orn 94.4 0.3 6.4E-06 42.7 8.8 69 109-188 1-83 (158)
328 TIGR01202 bchC 2-desacetyl-2-h 94.3 0.23 5E-06 47.0 8.8 88 108-211 143-230 (308)
329 PRK02006 murD UDP-N-acetylmura 94.3 0.15 3.3E-06 51.9 8.0 74 107-189 4-82 (498)
330 KOG2741 Dimeric dihydrodiol de 94.3 0.17 3.7E-06 49.9 8.0 92 112-209 7-101 (351)
331 PRK09880 L-idonate 5-dehydroge 94.3 0.44 9.5E-06 45.6 10.8 94 108-212 168-266 (343)
332 TIGR00670 asp_carb_tr aspartat 94.3 0.19 4.1E-06 48.7 8.2 71 106-185 146-223 (301)
333 PRK05086 malate dehydrogenase; 94.3 0.39 8.4E-06 46.5 10.4 73 112-188 1-79 (312)
334 COG1648 CysG Siroheme synthase 94.3 0.29 6.2E-06 45.1 9.0 81 106-195 8-89 (210)
335 PLN02353 probable UDP-glucose 94.3 0.32 7E-06 49.9 10.2 102 106-215 320-450 (473)
336 TIGR01761 thiaz-red thiazoliny 94.3 0.19 4.2E-06 49.5 8.3 86 112-209 4-94 (343)
337 PRK08306 dipicolinate synthase 94.2 0.18 3.8E-06 48.5 7.8 85 110-209 2-98 (296)
338 cd00704 MDH Malate dehydrogena 94.2 0.18 3.9E-06 49.1 8.0 68 113-186 2-84 (323)
339 TIGR01772 MDH_euk_gproteo mala 94.2 0.3 6.5E-06 47.5 9.4 68 113-188 1-77 (312)
340 PRK06019 phosphoribosylaminoim 94.2 0.09 1.9E-06 51.7 5.8 65 111-184 2-69 (372)
341 PRK05690 molybdopterin biosynt 94.2 0.23 4.9E-06 46.5 8.2 28 105-133 27-54 (245)
342 PF00899 ThiF: ThiF family; I 94.2 0.13 2.7E-06 43.2 5.9 31 112-148 3-34 (135)
343 PRK02472 murD UDP-N-acetylmura 94.1 0.19 4.1E-06 50.0 8.1 71 107-186 2-76 (447)
344 PRK08040 putative semialdehyde 94.1 0.13 2.9E-06 50.5 6.8 89 112-213 5-98 (336)
345 cd01485 E1-1_like Ubiquitin ac 94.1 0.28 6.1E-06 44.3 8.4 36 105-147 14-50 (198)
346 PRK15076 alpha-galactosidase; 94.1 0.066 1.4E-06 54.2 4.7 76 111-189 1-86 (431)
347 TIGR03366 HpnZ_proposed putati 94.1 0.41 8.8E-06 44.5 9.7 93 108-211 119-217 (280)
348 COG2910 Putative NADH-flavin r 94.0 0.19 4.1E-06 46.0 7.1 69 112-189 1-73 (211)
349 PRK06598 aspartate-semialdehyd 94.0 0.34 7.3E-06 48.3 9.5 157 111-285 1-180 (369)
350 PRK05678 succinyl-CoA syntheta 94.0 0.36 7.8E-06 46.6 9.3 90 112-217 9-103 (291)
351 PF03059 NAS: Nicotianamine sy 93.9 0.24 5.2E-06 47.5 8.0 124 85-215 95-235 (276)
352 cd01337 MDH_glyoxysomal_mitoch 93.9 0.16 3.5E-06 49.3 6.9 70 112-187 1-77 (310)
353 PRK08664 aspartate-semialdehyd 93.8 0.25 5.4E-06 48.4 8.0 92 112-213 4-108 (349)
354 cd01483 E1_enzyme_family Super 93.7 0.6 1.3E-05 39.3 9.3 29 113-147 1-30 (143)
355 PRK08328 hypothetical protein; 93.7 0.38 8.2E-06 44.5 8.7 28 105-133 22-49 (231)
356 PLN00106 malate dehydrogenase 93.7 0.18 3.9E-06 49.2 6.8 70 112-187 19-95 (323)
357 TIGR00978 asd_EA aspartate-sem 93.6 0.31 6.6E-06 47.6 8.3 94 112-214 1-106 (341)
358 COG0031 CysK Cysteine synthase 93.6 0.45 9.7E-06 46.2 9.3 103 186-299 41-156 (300)
359 COG0771 MurD UDP-N-acetylmuram 93.6 0.19 4.2E-06 51.3 7.0 71 106-185 3-76 (448)
360 PRK04690 murD UDP-N-acetylmura 93.6 0.23 5E-06 50.4 7.6 71 107-186 5-77 (468)
361 PRK10537 voltage-gated potassi 93.6 0.45 9.7E-06 47.7 9.5 89 112-211 241-336 (393)
362 PRK07688 thiamine/molybdopteri 93.5 0.45 9.7E-06 46.7 9.3 89 105-200 19-138 (339)
363 PLN02586 probable cinnamyl alc 93.5 0.74 1.6E-05 44.7 10.7 93 109-211 183-277 (360)
364 PRK04284 ornithine carbamoyltr 93.4 0.29 6.3E-06 48.0 7.8 72 106-186 151-232 (332)
365 cd08237 ribitol-5-phosphate_DH 93.4 0.64 1.4E-05 44.6 10.1 91 109-211 163-255 (341)
366 PRK12809 putative oxidoreducta 93.4 0.36 7.9E-06 50.9 9.0 72 109-187 309-404 (639)
367 PRK05562 precorrin-2 dehydroge 93.4 1 2.3E-05 41.9 11.0 85 106-199 21-106 (223)
368 PLN02520 bifunctional 3-dehydr 93.4 0.19 4E-06 52.2 6.7 94 107-211 376-474 (529)
369 PRK14027 quinate/shikimate deh 93.3 0.17 3.7E-06 48.4 5.9 76 107-190 124-206 (283)
370 PRK14804 ornithine carbamoyltr 93.3 0.39 8.5E-06 46.6 8.4 70 107-186 150-226 (311)
371 PRK04308 murD UDP-N-acetylmura 93.3 0.34 7.3E-06 48.5 8.2 71 107-186 2-75 (445)
372 TIGR01019 sucCoAalpha succinyl 93.3 0.61 1.3E-05 44.9 9.6 90 112-215 7-99 (286)
373 TIGR03026 NDP-sugDHase nucleot 93.3 0.51 1.1E-05 47.0 9.4 90 106-211 309-409 (411)
374 PRK12562 ornithine carbamoyltr 93.3 0.33 7.1E-06 47.8 7.8 71 107-186 153-233 (334)
375 PF03447 NAD_binding_3: Homose 93.2 0.47 1E-05 38.6 7.6 84 118-211 1-89 (117)
376 TIGR02822 adh_fam_2 zinc-bindi 93.2 0.63 1.4E-05 44.5 9.6 90 109-212 165-254 (329)
377 PRK02318 mannitol-1-phosphate 93.1 0.22 4.7E-06 49.3 6.4 84 112-202 1-104 (381)
378 TIGR02355 moeB molybdopterin s 93.1 0.39 8.4E-06 44.8 7.7 28 105-133 19-46 (240)
379 PRK06728 aspartate-semialdehyd 93.0 0.29 6.4E-06 48.4 7.2 89 112-214 6-101 (347)
380 PRK09414 glutamate dehydrogena 93.0 0.28 6.1E-06 50.0 7.3 87 106-199 228-333 (445)
381 PTZ00187 succinyl-CoA syntheta 93.0 0.69 1.5E-05 45.3 9.6 90 112-215 30-124 (317)
382 TIGR01771 L-LDH-NAD L-lactate 92.9 0.59 1.3E-05 45.0 9.0 67 116-188 1-74 (299)
383 PRK01713 ornithine carbamoyltr 92.8 0.4 8.7E-06 47.1 7.7 71 107-186 153-233 (334)
384 PRK10637 cysG siroheme synthas 92.7 0.64 1.4E-05 47.3 9.3 85 101-195 4-89 (457)
385 PRK08644 thiamine biosynthesis 92.5 0.64 1.4E-05 42.5 8.2 28 105-133 23-50 (212)
386 cd01487 E1_ThiF_like E1_ThiF_l 92.5 0.63 1.4E-05 41.2 8.0 30 113-148 1-31 (174)
387 PRK03806 murD UDP-N-acetylmura 92.4 0.5 1.1E-05 47.1 8.0 71 107-186 3-73 (438)
388 PRK05597 molybdopterin biosynt 92.4 0.47 1E-05 46.8 7.7 28 105-133 23-50 (355)
389 PRK02102 ornithine carbamoyltr 92.4 0.49 1.1E-05 46.5 7.8 72 106-186 151-232 (331)
390 PRK03515 ornithine carbamoyltr 92.3 0.61 1.3E-05 45.9 8.2 71 107-186 153-233 (336)
391 CHL00194 ycf39 Ycf39; Provisio 92.2 0.31 6.8E-06 46.2 6.0 69 112-187 1-73 (317)
392 PRK12550 shikimate 5-dehydroge 92.2 0.43 9.3E-06 45.5 6.9 86 112-211 123-215 (272)
393 PRK08762 molybdopterin biosynt 92.2 0.78 1.7E-05 45.3 9.0 88 105-199 130-246 (376)
394 PRK05600 thiamine biosynthesis 92.2 0.59 1.3E-05 46.5 8.1 88 105-199 36-152 (370)
395 TIGR01757 Malate-DH_plant mala 92.1 0.75 1.6E-05 46.2 8.8 22 112-133 45-67 (387)
396 TIGR01296 asd_B aspartate-semi 92.1 0.28 6.1E-06 48.0 5.7 87 113-213 1-93 (339)
397 COG0078 ArgF Ornithine carbamo 92.1 0.54 1.2E-05 45.8 7.5 86 108-204 151-249 (310)
398 PRK14573 bifunctional D-alanyl 92.1 0.45 9.7E-06 51.6 7.8 65 112-185 5-70 (809)
399 PRK08223 hypothetical protein; 92.1 0.98 2.1E-05 43.6 9.2 28 105-133 22-49 (287)
400 TIGR01318 gltD_gamma_fam gluta 92.0 0.75 1.6E-05 46.7 8.8 73 109-188 140-236 (467)
401 TIGR02819 fdhA_non_GSH formald 91.8 1.8 3.8E-05 42.9 11.0 98 108-212 184-299 (393)
402 PRK00856 pyrB aspartate carbam 91.8 0.66 1.4E-05 45.0 7.8 67 106-186 152-221 (305)
403 PLN02477 glutamate dehydrogena 91.8 0.34 7.3E-06 49.0 5.9 32 106-144 202-233 (410)
404 cd01486 Apg7 Apg7 is an E1-lik 91.8 0.43 9.3E-06 46.5 6.4 21 113-133 1-21 (307)
405 PLN00112 malate dehydrogenase 91.7 1.2 2.7E-05 45.4 10.0 75 112-187 101-185 (444)
406 PRK03803 murD UDP-N-acetylmura 91.7 0.57 1.2E-05 46.9 7.5 67 112-186 7-76 (448)
407 PRK12771 putative glutamate sy 91.6 0.43 9.4E-06 49.4 6.7 76 107-189 134-233 (564)
408 PLN02342 ornithine carbamoyltr 91.6 0.72 1.6E-05 45.7 7.9 71 106-186 190-267 (348)
409 PRK07200 aspartate/ornithine c 91.5 0.72 1.6E-05 46.4 7.9 71 107-186 184-270 (395)
410 PRK07878 molybdopterin biosynt 91.5 0.8 1.7E-05 45.7 8.2 28 105-133 37-64 (392)
411 TIGR01087 murD UDP-N-acetylmur 91.4 0.56 1.2E-05 46.6 7.0 65 113-186 1-70 (433)
412 PRK00779 ornithine carbamoyltr 91.4 0.78 1.7E-05 44.4 7.8 71 106-185 148-224 (304)
413 cd08255 2-desacetyl-2-hydroxye 91.2 1.8 3.9E-05 39.4 9.7 92 108-212 96-190 (277)
414 PRK07877 hypothetical protein; 91.2 0.38 8.2E-06 51.9 5.9 111 78-198 71-216 (722)
415 PRK06392 homoserine dehydrogen 91.2 0.67 1.5E-05 45.4 7.2 100 112-211 1-115 (326)
416 PRK08374 homoserine dehydrogen 91.1 1.7 3.6E-05 42.6 9.9 95 112-209 3-119 (336)
417 cd05188 MDR Medium chain reduc 90.9 3.2 6.9E-05 36.9 10.8 94 108-212 133-232 (271)
418 PRK00517 prmA ribosomal protei 90.8 0.89 1.9E-05 42.2 7.4 88 108-211 118-212 (250)
419 TIGR02469 CbiT precorrin-6Y C5 90.8 4.1 8.9E-05 32.2 10.4 93 109-209 19-119 (124)
420 TIGR03316 ygeW probable carbam 90.8 0.94 2E-05 45.0 7.8 72 106-186 166-253 (357)
421 PLN02514 cinnamyl-alcohol dehy 90.7 1.9 4.1E-05 41.6 9.8 95 108-212 179-275 (357)
422 PRK14031 glutamate dehydrogena 90.7 1 2.2E-05 46.0 8.2 36 106-148 224-259 (444)
423 COG0039 Mdh Malate/lactate deh 90.7 0.46 1E-05 46.4 5.5 71 112-186 1-77 (313)
424 COG2227 UbiG 2-polyprenyl-3-me 90.7 2 4.3E-05 40.6 9.5 91 108-211 58-160 (243)
425 TIGR03451 mycoS_dep_FDH mycoth 90.7 2.4 5.1E-05 40.8 10.4 94 109-212 176-276 (358)
426 PRK12769 putative oxidoreducta 90.6 1 2.2E-05 47.6 8.5 72 109-187 326-421 (654)
427 PLN00141 Tic62-NAD(P)-related 90.6 0.87 1.9E-05 41.5 7.0 76 106-188 13-95 (251)
428 PRK01581 speE spermidine synth 90.5 2.4 5.2E-05 42.5 10.4 97 109-213 149-269 (374)
429 PLN02178 cinnamyl-alcohol dehy 90.4 2.3 5E-05 41.7 10.3 92 109-211 178-272 (375)
430 PRK07411 hypothetical protein; 90.4 0.9 1.9E-05 45.4 7.4 88 105-199 33-149 (390)
431 KOG0023 Alcohol dehydrogenase, 90.3 0.96 2.1E-05 44.6 7.3 125 78-211 126-278 (360)
432 PRK08265 short chain dehydroge 90.3 1.4 3E-05 40.3 8.1 39 106-151 2-41 (261)
433 COG0289 DapB Dihydrodipicolina 90.3 2.3 5E-05 40.7 9.6 161 111-285 2-179 (266)
434 TIGR00658 orni_carb_tr ornithi 90.3 1.1 2.4E-05 43.4 7.6 72 106-186 144-224 (304)
435 PRK06463 fabG 3-ketoacyl-(acyl 90.1 1.8 4E-05 39.1 8.7 38 107-151 4-42 (255)
436 TIGR03693 ocin_ThiF_like putat 90.1 1.6 3.4E-05 46.4 9.2 98 109-213 128-241 (637)
437 PLN02527 aspartate carbamoyltr 90.1 1 2.3E-05 43.6 7.4 72 106-185 147-225 (306)
438 TIGR01082 murC UDP-N-acetylmur 90.0 0.88 1.9E-05 45.7 7.1 64 113-185 1-65 (448)
439 TIGR01161 purK phosphoribosyla 90.0 0.68 1.5E-05 44.9 6.1 62 113-184 1-66 (352)
440 TIGR01532 E4PD_g-proteo D-eryt 90.0 1.2 2.7E-05 43.6 7.8 95 113-212 1-120 (325)
441 COG0334 GdhA Glutamate dehydro 90.0 1 2.2E-05 45.5 7.4 39 106-151 203-241 (411)
442 PRK02255 putrescine carbamoylt 89.8 1.1 2.3E-05 44.2 7.3 71 107-186 151-230 (338)
443 PRK05786 fabG 3-ketoacyl-(acyl 89.7 4 8.8E-05 36.1 10.4 38 107-151 2-40 (238)
444 PRK06153 hypothetical protein; 89.5 0.97 2.1E-05 45.5 6.8 88 105-199 171-287 (393)
445 KOG3007 Mu-crystallin [Amino a 89.4 0.66 1.4E-05 44.8 5.2 97 113-217 140-242 (333)
446 PRK15182 Vi polysaccharide bio 89.4 2.3 5.1E-05 42.9 9.5 95 106-215 310-416 (425)
447 PRK12409 D-amino acid dehydrog 89.4 0.52 1.1E-05 46.1 4.8 34 111-150 1-34 (410)
448 cd08281 liver_ADH_like1 Zinc-d 89.3 3 6.4E-05 40.4 9.9 91 109-210 191-288 (371)
449 PRK10309 galactitol-1-phosphat 89.2 2.6 5.6E-05 40.2 9.3 47 109-162 160-206 (347)
450 cd08239 THR_DH_like L-threonin 89.1 3.2 6.9E-05 39.2 9.8 93 108-211 162-261 (339)
451 PRK06057 short chain dehydroge 89.1 2.1 4.6E-05 38.7 8.2 37 107-150 4-41 (255)
452 PRK08192 aspartate carbamoyltr 88.9 1.7 3.7E-05 42.8 8.0 71 107-185 156-233 (338)
453 PRK10083 putative oxidoreducta 88.9 4.5 9.8E-05 38.0 10.6 94 108-211 159-258 (339)
454 COG1062 AdhC Zn-dependent alco 88.8 2.5 5.4E-05 42.0 9.0 128 109-252 185-331 (366)
455 cd08285 NADP_ADH NADP(H)-depen 88.7 4.8 0.0001 38.3 10.8 93 109-211 166-265 (351)
456 PRK07774 short chain dehydroge 88.7 3.8 8.2E-05 36.6 9.6 38 106-150 2-40 (250)
457 PRK12825 fabG 3-ketoacyl-(acyl 88.7 3.7 8E-05 36.2 9.3 38 107-151 3-41 (249)
458 PRK05717 oxidoreductase; Valid 88.7 2 4.3E-05 38.9 7.7 36 107-149 7-43 (255)
459 PRK06114 short chain dehydroge 88.6 4.2 9.2E-05 36.8 9.9 38 107-151 5-43 (254)
460 PRK07231 fabG 3-ketoacyl-(acyl 88.6 0.92 2E-05 40.5 5.5 38 107-151 2-40 (251)
461 PLN02827 Alcohol dehydrogenase 88.6 3.5 7.7E-05 40.3 10.0 92 109-210 193-293 (378)
462 TIGR03570 NeuD_NnaD sugar O-ac 88.5 1.2 2.7E-05 38.5 6.0 80 113-200 1-81 (201)
463 cd01491 Ube1_repeat1 Ubiquitin 88.4 1.7 3.8E-05 41.8 7.5 36 105-147 14-50 (286)
464 PRK04523 N-acetylornithine car 88.4 2 4.3E-05 42.3 8.0 72 106-186 164-252 (335)
465 PRK07825 short chain dehydroge 88.4 2.2 4.8E-05 39.0 7.9 37 107-150 2-39 (273)
466 PRK02705 murD UDP-N-acetylmura 88.4 1.9 4.1E-05 43.1 8.1 68 113-186 2-76 (459)
467 cd08283 FDH_like_1 Glutathione 88.3 4.6 9.9E-05 39.4 10.5 97 109-212 184-306 (386)
468 PRK13394 3-hydroxybutyrate deh 88.3 1.6 3.5E-05 39.2 6.9 38 106-150 3-41 (262)
469 PLN02948 phosphoribosylaminoim 88.3 0.96 2.1E-05 47.5 6.1 71 107-187 19-92 (577)
470 cd08234 threonine_DH_like L-th 88.3 2.7 5.9E-05 39.3 8.7 93 108-211 158-256 (334)
471 PLN02740 Alcohol dehydrogenase 88.3 3.2 6.9E-05 40.4 9.4 46 109-162 198-244 (381)
472 PRK07060 short chain dehydroge 88.3 2.1 4.6E-05 38.0 7.6 74 107-187 6-86 (245)
473 PRK12828 short chain dehydroge 88.3 4.5 9.8E-05 35.5 9.6 37 107-150 4-41 (239)
474 PRK09242 tropinone reductase; 88.1 1.6 3.4E-05 39.6 6.7 37 107-150 6-43 (257)
475 PRK07523 gluconate 5-dehydroge 88.1 1.5 3.3E-05 39.6 6.6 38 106-150 6-44 (255)
476 PRK11891 aspartate carbamoyltr 88.1 2 4.3E-05 43.8 8.0 71 108-186 239-316 (429)
477 PRK12937 short chain dehydroge 88.1 3.7 8.1E-05 36.5 9.1 37 107-150 2-39 (245)
478 PRK07478 short chain dehydroge 88.1 1.6 3.5E-05 39.4 6.8 38 106-150 2-40 (254)
479 TIGR03201 dearomat_had 6-hydro 88.0 3.6 7.8E-05 39.4 9.5 46 109-162 166-211 (349)
480 PRK14805 ornithine carbamoyltr 87.9 1.7 3.7E-05 42.1 7.1 71 106-186 143-222 (302)
481 cd05283 CAD1 Cinnamyl alcohol 87.9 3.4 7.3E-05 39.2 9.1 94 108-212 168-263 (337)
482 PRK05867 short chain dehydroge 87.9 1.4 3.1E-05 39.8 6.3 38 106-150 5-43 (253)
483 cd08277 liver_alcohol_DH_like 87.9 4.7 0.0001 38.9 10.2 86 108-204 183-277 (365)
484 PRK12810 gltD glutamate syntha 87.7 2.1 4.6E-05 43.3 8.1 74 107-187 140-237 (471)
485 PRK06138 short chain dehydroge 87.7 1.8 4E-05 38.6 6.9 37 107-150 2-39 (252)
486 PLN00125 Succinyl-CoA ligase [ 87.7 2.3 5.1E-05 41.3 7.9 90 112-215 13-105 (300)
487 PRK13984 putative oxidoreducta 87.6 2 4.4E-05 44.8 8.0 72 109-187 282-377 (604)
488 cd08284 FDH_like_2 Glutathione 87.6 7.2 0.00016 36.7 11.1 95 107-212 165-266 (344)
489 PRK08217 fabG 3-ketoacyl-(acyl 87.5 1.8 3.9E-05 38.5 6.7 37 107-150 2-39 (253)
490 PRK12814 putative NADPH-depend 87.5 2.1 4.6E-05 45.4 8.2 73 108-187 191-287 (652)
491 PLN02662 cinnamyl-alcohol dehy 87.5 2.2 4.8E-05 39.8 7.5 72 109-187 3-85 (322)
492 cd05313 NAD_bind_2_Glu_DH NAD( 87.4 1 2.2E-05 42.7 5.2 33 105-144 33-65 (254)
493 PLN02214 cinnamoyl-CoA reducta 87.3 2.3 4.9E-05 41.0 7.6 76 106-188 6-91 (342)
494 TIGR02818 adh_III_F_hyde S-(hy 87.3 4.8 0.0001 39.0 9.9 46 109-162 185-231 (368)
495 PRK08936 glucose-1-dehydrogena 87.2 5.2 0.00011 36.3 9.6 39 106-151 3-42 (261)
496 PRK06197 short chain dehydroge 87.1 6.6 0.00014 36.8 10.5 47 96-150 3-50 (306)
497 PRK13814 pyrB aspartate carbam 87.0 1.5 3.3E-05 42.6 6.3 67 106-184 153-223 (310)
498 cd08298 CAD2 Cinnamyl alcohol 86.9 4.3 9.4E-05 37.9 9.1 90 108-211 166-255 (329)
499 PF00070 Pyr_redox: Pyridine n 86.9 1.5 3.3E-05 33.2 5.0 32 113-150 1-32 (80)
500 TIGR03325 BphB_TodD cis-2,3-di 86.8 2.8 6.1E-05 38.1 7.7 37 107-150 2-39 (262)
No 1
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=100.00 E-value=1.9e-43 Score=350.08 Aligned_cols=219 Identities=31% Similarity=0.476 Sum_probs=198.0
Q ss_pred ccccccchhhhhhccccchhhHHhhcCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 71 LLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 71 ~~~~~~~~~~~~~~~l~~~~e~vv~~G~w~F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
++|||+..|+.+..+|..-. .. . |-.|++....|+| |+|+|||+|+||.++|.+|+++ |++|+++.|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~r-~~-~--r~ef~~~~~~Lkg-KtIaIIGyGSqG~AqAlNLrdS------GvnVvvglr~~ 69 (487)
T PRK05225 1 ANYFNTLNLRQQLAQLGKCR-FM-D--RDEFADGASYLKG-KKIVIVGCGAQGLNQGLNMRDS------GLDISYALRKE 69 (487)
T ss_pred CCccccccHHHHHHHhccce-ec-c--hhhccchhHHhCC-CEEEEEccCHHHHHHhCCCccc------cceeEEecccc
Confidence 48999999998877665433 21 1 2256666799999 9999999999999999999999 99999999987
Q ss_pred -----cccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccC
Q 021218 151 -----SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLD 225 (316)
Q Consensus 151 -----~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~ 225 (316)
+++++.|.+.|+. ..+.+|++++||+|++++|+..+..++++++++||+|++|..+|||++.+.. ..
T Consensus 70 ~id~~~~s~~kA~~dGF~-----v~~~~Ea~~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fsHGFni~~~~---i~ 141 (487)
T PRK05225 70 AIAEKRASWRKATENGFK-----VGTYEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGFNIVEVG---EQ 141 (487)
T ss_pred ccccccchHHHHHhcCCc-----cCCHHHHHHhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEecCCceeeeCc---ee
Confidence 5788899999997 4589999999999999999998777889999999999999999999976654 48
Q ss_pred CCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeec--cCCCHHHHHHHHHHHHHcCCCC--eeecChhHHHhhc
Q 021218 226 FPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSD 301 (316)
Q Consensus 226 ~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~--~d~~~~a~e~a~~l~~alG~~~--~~~tT~~~e~~~d 301 (316)
+|+|++||+++|++||+.+|++|++| +|+|++|+++ ||+++++.|++++|+.++|+.| +++|||++|++||
T Consensus 142 ~~~dvdVimvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~E~~sD 216 (487)
T PRK05225 142 IRKDITVVMVAPKCPGTEVREEYKRG-----FGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSD 216 (487)
T ss_pred CCCCCcEEEECCCCCCchHHHHHhcC-----CCceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHHHHhhc
Confidence 89999999999999999999999998 8999999999 8999999999999999999996 8999999999999
Q ss_pred chhhhhhccCcc
Q 021218 302 IFGERGECFPAS 313 (316)
Q Consensus 302 l~~e~~~l~g~~ 313 (316)
|||||+||||++
T Consensus 217 L~GEq~vLcG~~ 228 (487)
T PRK05225 217 LMGEQTILCGML 228 (487)
T ss_pred chhhHHHHHhHH
Confidence 999999999998
No 2
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.9e-42 Score=325.58 Aligned_cols=189 Identities=39% Similarity=0.645 Sum_probs=180.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
..|+| |||+|||+|+||.++|+|||++ |.+|+++.|+++.++++|.+.|+. +.+.+|++++||+|++.
T Consensus 14 ~~Lkg-K~iaIIGYGsQG~ahalNLRDS------GlnViiGlr~g~~s~~kA~~dGf~-----V~~v~ea~k~ADvim~L 81 (338)
T COG0059 14 DLLKG-KKVAIIGYGSQGHAQALNLRDS------GLNVIIGLRKGSSSWKKAKEDGFK-----VYTVEEAAKRADVVMIL 81 (338)
T ss_pred hHhcC-CeEEEEecChHHHHHHhhhhhc------CCcEEEEecCCchhHHHHHhcCCE-----eecHHHHhhcCCEEEEe
Confidence 47899 9999999999999999999999 999999999999999999999998 56899999999999999
Q ss_pred ccCchHHHHHH-HHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEe
Q 021218 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (316)
Q Consensus 186 vp~~~~~~vi~-ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iia 264 (316)
+||..+.++++ +|.+.|++|+.|..+|||++.+-.. .||++++||++.|++||+.+|++|.+| +|.|++|+
T Consensus 82 ~PDe~q~~vy~~~I~p~Lk~G~aL~FaHGfNihf~~i---~ppkdvdV~MVAPKgPG~~VR~~y~~G-----~GvP~LiA 153 (338)
T COG0059 82 LPDEQQKEVYEKEIAPNLKEGAALGFAHGFNIHFGLI---VPPKDVDVIMVAPKGPGHLVRREYKEG-----FGVPALIA 153 (338)
T ss_pred CchhhHHHHHHHHhhhhhcCCceEEeccccceeccee---cCCccCcEEEEcCCCCcHHHHHHHHcc-----CCceeEEE
Confidence 99999999998 8999999999999999999877543 789999999999999999999999998 89999999
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCC--eeecChhHHHhhcchhhhhhccCccc
Q 021218 265 VHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGECFPASI 314 (316)
Q Consensus 265 p~~d~~~~a~e~a~~l~~alG~~~--~~~tT~~~e~~~dl~~e~~~l~g~~~ 314 (316)
++||.++++++++++|+.++|+.| +.+|||++|+++||||||+||||++.
T Consensus 154 V~qD~sG~a~~~Ala~AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcGgl~ 205 (338)
T COG0059 154 VHQDASGKALDIALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLQ 205 (338)
T ss_pred EEeCCCchHHHHHHHHHHhcCCCccceEeeeeHHhhhcccccchhhhhhHHH
Confidence 999999999999999999999987 79999999999999999999999874
No 3
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=100.00 E-value=1.9e-40 Score=318.25 Aligned_cols=189 Identities=37% Similarity=0.598 Sum_probs=174.2
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
...|+| ++|||||+|+||.++|++|+++ |++|++++++ .++.+.+...|+. ..+++|++++||+|++
T Consensus 11 ~~~Lkg-KtVGIIG~GsIG~amA~nL~d~------G~~ViV~~r~-~~s~~~A~~~G~~-----v~sl~Eaak~ADVV~l 77 (335)
T PRK13403 11 VELLQG-KTVAVIGYGSQGHAQAQNLRDS------GVEVVVGVRP-GKSFEVAKADGFE-----VMSVSEAVRTAQVVQM 77 (335)
T ss_pred hhhhCc-CEEEEEeEcHHHHHHHHHHHHC------cCEEEEEECc-chhhHHHHHcCCE-----ECCHHHHHhcCCEEEE
Confidence 478999 9999999999999999999999 9999988876 5566777788886 3489999999999999
Q ss_pred cccCchHHHHHH-HHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEE
Q 021218 185 LISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (316)
Q Consensus 185 avp~~~~~~vi~-ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~ii 263 (316)
++|+..+.+++. +++++||+|++|+.+|||++.+-+ +.||++++||++.|++||+.+|++|.+| .|+|++|
T Consensus 78 lLPd~~t~~V~~~eil~~MK~GaiL~f~hgfni~~~~---i~pp~~vdv~mvaPKgpG~~vR~~y~~G-----~Gvp~l~ 149 (335)
T PRK13403 78 LLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFGQ---INPPSYVDVAMVAPKSPGHLVRRVFQEG-----NGVPALV 149 (335)
T ss_pred eCCChHHHHHHHHHHHhcCCCCCEEEECCCcceecCc---eeCCCCCeEEEECCCCCChHHHHHHHcC-----CCceeEE
Confidence 999987777886 799999999999999999987654 3789999999999999999999999998 8999999
Q ss_pred eeccCCCHHHHHHHHHHHHHcCCCC--eeecChhHHHhhcchhhhhhccCccc
Q 021218 264 AVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGECFPASI 314 (316)
Q Consensus 264 ap~~d~~~~a~e~a~~l~~alG~~~--~~~tT~~~e~~~dl~~e~~~l~g~~~ 314 (316)
+++||.++++.+++++++.++|+.| +++|||++|+++||||||+||||++.
T Consensus 150 av~qd~sg~a~~~ala~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~~ 202 (335)
T PRK13403 150 AVHQDATGTALHVALAYAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGVT 202 (335)
T ss_pred EEEECCCCcHHHHHHHHHHHcCCCceeEEecchHHHHhhhhcccchhhHHHHH
Confidence 9999999999999999999999997 89999999999999999999999974
No 4
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=100.00 E-value=1.7e-37 Score=299.40 Aligned_cols=190 Identities=38% Similarity=0.616 Sum_probs=177.4
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
...|+| ++|||||+|+||.++|++|+++ |++|+++.++++++.+.+.+.|+. ..+.++++++||+|++
T Consensus 12 ~~~L~g-ktIgIIG~GsmG~AlA~~L~~s------G~~Vvv~~r~~~~s~~~A~~~G~~-----~~s~~eaa~~ADVVvL 79 (330)
T PRK05479 12 LSLIKG-KKVAIIGYGSQGHAHALNLRDS------GVDVVVGLREGSKSWKKAEADGFE-----VLTVAEAAKWADVIMI 79 (330)
T ss_pred hhhhCC-CEEEEEeeHHHHHHHHHHHHHC------CCEEEEEECCchhhHHHHHHCCCe-----eCCHHHHHhcCCEEEE
Confidence 477899 9999999999999999999999 999998988877788888888887 3488999999999999
Q ss_pred cccCchHHHHH-HHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEE
Q 021218 185 LISDAAQADNY-EKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (316)
Q Consensus 185 avp~~~~~~vi-~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~ii 263 (316)
++||+.+.+++ ++++++|++|++|+++||+++.+.+. ++|+++++|++|||+|++.+|+.|+.| +|+++++
T Consensus 80 aVPd~~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~~~---~p~~~~~Vi~vaPn~Pg~~vr~~~~~G-----~Gv~~l~ 151 (330)
T PRK05479 80 LLPDEVQAEVYEEEIEPNLKEGAALAFAHGFNIHFGQI---VPPADVDVIMVAPKGPGHLVRREYEEG-----GGVPCLI 151 (330)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCEEEECCCCChhhcee---ccCCCCcEEEeCCCCCchhhhhhhhcC-----CCceEEE
Confidence 99999998898 68999999999999999999988876 788999999999999999999999998 8999999
Q ss_pred eeccCCCHHHHHHHHHHHHHcCCCC--eeecChhHHHhhcchhhhhhccCccc
Q 021218 264 AVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGECFPASI 314 (316)
Q Consensus 264 ap~~d~~~~a~e~a~~l~~alG~~~--~~~tT~~~e~~~dl~~e~~~l~g~~~ 314 (316)
++++|+++++.+.+++|+.++|+.+ +++|||++|+++||||||++|||++.
T Consensus 152 av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~ 204 (330)
T PRK05479 152 AVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLT 204 (330)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHH
Confidence 9999999999999999999999986 79999999999999999999999875
No 5
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=100.00 E-value=3.4e-34 Score=275.08 Aligned_cols=187 Identities=40% Similarity=0.625 Sum_probs=169.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
|+| |+|||||+|+||.++|++|+++ |++++++.++++++.+.+.+.|+. ..++.+++++||+|+|++|
T Consensus 1 l~~-kkIgiIG~G~mG~AiA~~L~~s------G~~Viv~~~~~~~~~~~a~~~Gv~-----~~s~~ea~~~ADiVvLaVp 68 (314)
T TIGR00465 1 LKG-KTVAIIGYGSQGHAQALNLRDS------GLNVIVGLRKGGASWKKATEDGFK-----VGTVEEAIPQADLIMNLLP 68 (314)
T ss_pred CCc-CEEEEEeEcHHHHHHHHHHHHC------CCeEEEEECcChhhHHHHHHCCCE-----ECCHHHHHhcCCEEEEeCC
Confidence 578 9999999999999999999999 988888888766667777788886 3368889999999999999
Q ss_pred CchHHH-HHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeec
Q 021218 188 DAAQAD-NYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (316)
Q Consensus 188 ~~~~~~-vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~ 266 (316)
|+.+.. +.+++.+.++++.+|+.+||+++.+++. .+|++++|||+|||+|++.+|++|++| +|++++++++
T Consensus 69 p~~~~~~v~~ei~~~l~~g~iVs~aaG~~i~~~~~---~~~~~~~VvrvmPn~p~~~vr~~~~~G-----~G~~~l~a~~ 140 (314)
T TIGR00465 69 DEVQHEVYEAEIQPLLKEGKTLGFSHGFNIHFVQI---VPPKDVDVVMVAPKGPGTLVREEYKEG-----FGVPTLIAVE 140 (314)
T ss_pred cHhHHHHHHHHHHhhCCCCcEEEEeCCccHhhccc---cCCCCCcEEEECCCCCcHHHHHHhhcC-----CCeeEEEEec
Confidence 995555 5568999999999999999999999876 778899999999999999899999998 8999988899
Q ss_pred cCCCHHHHHHHHHHHHHcCCC--CeeecChhHHHhhcchhhhhhccCccc
Q 021218 267 QDVDGRATNVALGWSVALGSP--FTFATTLEQEYRSDIFGERGECFPASI 314 (316)
Q Consensus 267 ~d~~~~a~e~a~~l~~alG~~--~~~~tT~~~e~~~dl~~e~~~l~g~~~ 314 (316)
++.++++.+.+++|+.++|.. .+++|||++|+..|+|+||++|||+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~p 190 (314)
T TIGR00465 141 QDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLT 190 (314)
T ss_pred CCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHH
Confidence 999999999999999999998 489999999999999999999999875
No 6
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=100.00 E-value=4.5e-33 Score=243.85 Aligned_cols=161 Identities=44% Similarity=0.721 Sum_probs=136.5
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
|+| |+|+|||+|++|.++|+|||++ |.+|+++.|++++++++|++.|+. ..+.+|++++||+|++++|
T Consensus 2 l~~-k~IAViGyGsQG~a~AlNLrDS------G~~V~Vglr~~s~s~~~A~~~Gf~-----v~~~~eAv~~aDvV~~L~P 69 (165)
T PF07991_consen 2 LKG-KTIAVIGYGSQGHAHALNLRDS------GVNVIVGLREGSASWEKAKADGFE-----VMSVAEAVKKADVVMLLLP 69 (165)
T ss_dssp HCT-SEEEEES-SHHHHHHHHHHHHC------C-EEEEEE-TTCHHHHHHHHTT-E-----CCEHHHHHHC-SEEEE-S-
T ss_pred cCC-CEEEEECCChHHHHHHHHHHhC------CCCEEEEecCCCcCHHHHHHCCCe-----eccHHHHHhhCCEEEEeCC
Confidence 678 9999999999999999999999 999999999999899999999998 4689999999999999999
Q ss_pred CchHHHHHH-HHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeec
Q 021218 188 DAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (316)
Q Consensus 188 ~~~~~~vi~-ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~ 266 (316)
|..+.++++ ++.++||+|++|..+|||++.+-. +.+|+++++++++|++||+.+|++|++| .|.+++++++
T Consensus 70 D~~q~~vy~~~I~p~l~~G~~L~fahGfni~~~~---i~pp~~vdV~mvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~ 141 (165)
T PF07991_consen 70 DEVQPEVYEEEIAPNLKPGATLVFAHGFNIHYGL---IKPPKDVDVIMVAPKGPGHLVRREYVEG-----RGVPALIAVH 141 (165)
T ss_dssp HHHHHHHHHHHHHHHS-TT-EEEESSSHHHHCTT---S---TTSEEEEEEESSSCHHHHHHHHCC-----TS--EEEEEE
T ss_pred hHHHHHHHHHHHHhhCCCCCEEEeCCcchhhcCc---ccCCCCCeEEEEecCCCChHHHHHHHcC-----CCceEEEEEE
Confidence 999999995 899999999999999999986543 3778999999999999999999999998 7999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCC
Q 021218 267 QDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 267 ~d~~~~a~e~a~~l~~alG~~~ 288 (316)
||.++++++++++|+.++|+.|
T Consensus 142 qD~sg~A~~~ala~A~~iG~~r 163 (165)
T PF07991_consen 142 QDASGKAKELALAYAKAIGGTR 163 (165)
T ss_dssp E-SSS-HHHHHHHHHHHTTHHH
T ss_pred ECCCchHHHHHHHHHHHhCCcC
Confidence 9999999999999999999754
No 7
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.86 E-value=6.4e-21 Score=180.73 Aligned_cols=170 Identities=18% Similarity=0.251 Sum_probs=140.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEE-EEEecCCcccHHHHHHCCceecCCCcCCH-HhhhccCCEEEEcccCc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV-KVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLISDA 189 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~V-ivg~r~~~~s~~~A~~~G~~~~~~t~~~~-~e~i~~ADIViLavp~~ 189 (316)
++|+|||+|+||+++|+.|++. |+.+ +++.+.+....+.+.+.|++++ ...+. .+.+.++|+||++||..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~------g~~v~i~g~d~~~~~~~~a~~lgv~d~--~~~~~~~~~~~~aD~VivavPi~ 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEA------GLVVRIIGRDRSAATLKAALELGVIDE--LTVAGLAEAAAEADLVIVAVPIE 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHc------CCeEEEEeecCcHHHHHHHhhcCcccc--cccchhhhhcccCCEEEEeccHH
Confidence 7999999999999999999999 9876 5666666667778888888742 22233 67788999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchh-hHHHHhcCccccCCCceEEEeeccC
Q 021218 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS-VRRLYVQGKEINGAGINSSFAVHQD 268 (316)
Q Consensus 190 ~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~-~r~lf~~G~e~~G~G~~~iiap~~d 268 (316)
...++++++.+++|+|++|+|+.+++...++......|++..||++|| +.|++ ..++|+ +..+++||.+.
T Consensus 76 ~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HP-M~G~~~~~~lf~--------~~~~vltp~~~ 146 (279)
T COG0287 76 ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHP-MFGPEADAGLFE--------NAVVVLTPSEG 146 (279)
T ss_pred HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCC-CCCCcccccccC--------CCEEEEcCCCC
Confidence 999999999999999999999999985544433336666569999999 66774 334444 47899999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCeeecChhHHHh
Q 021218 269 VDGRATNVALGWSVALGSPFTFATTLEQEYR 299 (316)
Q Consensus 269 ~~~~a~e~a~~l~~alG~~~~~~tT~~~e~~ 299 (316)
.+.+.++.++++|.++| .+++.+|+++|=+
T Consensus 147 ~~~~~~~~~~~~~~~~g-a~~v~~~~eeHD~ 176 (279)
T COG0287 147 TEKEWVEEVKRLWEALG-ARLVEMDAEEHDR 176 (279)
T ss_pred CCHHHHHHHHHHHHHcC-CEEEEcChHHHhH
Confidence 99999999999999999 8899999999943
No 8
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.85 E-value=1.5e-20 Score=177.03 Aligned_cols=153 Identities=20% Similarity=0.280 Sum_probs=125.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCCcccHHHHH-HCCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~----~Vivg~r~~~~s~~~A~-~~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
++|||||+|+||.+++++|.+. |+ +|++.+++ ....+.+. +.|+.. ..+..+++++||+||||+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~------g~~~~~~I~v~~r~-~~~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLav 71 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK------NIVSPDQIICSDLN-VSNLKNASDKYGITI----TTNNNEVANSADILILSI 71 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCCCCceEEEECCC-HHHHHHHHHhcCcEE----eCCcHHHHhhCCEEEEEe
Confidence 6899999999999999999987 63 45555544 44444444 477642 457788899999999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEee
Q 021218 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap 265 (316)
||+...++++++.++++++++|+ +++|+++..+++ .++...+++|+|||+|... | +|++. +++
T Consensus 72 kP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~---~l~~~~~vvR~MPN~~~~v-------g-----~g~t~-~~~ 135 (272)
T PRK12491 72 KPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTEN---EFDRKLKVIRVMPNTPVLV-------G-----EGMSA-LCF 135 (272)
T ss_pred ChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHH---hcCCCCcEEEECCChHHHH-------c-----CceEE-EEe
Confidence 99998999999999999988776 789999999987 5665678999999999987 5 68888 678
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCCeeecC
Q 021218 266 HQDVDGRATNVALGWSVALGSPFTFATT 293 (316)
Q Consensus 266 ~~d~~~~a~e~a~~l~~alG~~~~~~tT 293 (316)
.++.+.+..+.++.||+.+|. ++...
T Consensus 136 ~~~~~~~~~~~v~~lf~~~G~--~~~~~ 161 (272)
T PRK12491 136 NEMVTEKDIKEVLNIFNIFGQ--TEVVN 161 (272)
T ss_pred CCCCCHHHHHHHHHHHHcCCC--EEEEc
Confidence 899999999999999999994 44443
No 9
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.85 E-value=2e-20 Score=176.11 Aligned_cols=153 Identities=20% Similarity=0.276 Sum_probs=132.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC----cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G----~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
|++|||||+|+||.+++.+|.++ | .+|++.++..++..+.+.++|... ..+..+++.++|+|||++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~------g~~~~~~I~v~~~~~e~~~~l~~~~g~~~----~~~~~~~~~~advv~Lav 70 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKS------GALPPEEIIVTNRSEEKRAALAAEYGVVT----TTDNQEAVEEADVVFLAV 70 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhc------CCCCcceEEEeCCCHHHHHHHHHHcCCcc----cCcHHHHHhhCCEEEEEe
Confidence 58999999999999999999998 7 377777777665556777888762 457789999999999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEee
Q 021218 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap 265 (316)
+|+...+++.++.+ ..++++|+ +++|+.+..++. .++ +.+++|+|||+|... | +|++. +++
T Consensus 71 KPq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~---~l~-~~~vvR~MPNt~a~v-------g-----~g~t~-i~~ 132 (266)
T COG0345 71 KPQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLER---LLG-GLRVVRVMPNTPALV-------G-----AGVTA-ISA 132 (266)
T ss_pred ChHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHH---HcC-CCceEEeCCChHHHH-------c-----Cccee-eec
Confidence 99999999999988 66777655 999999999987 777 899999999999998 5 78888 899
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCCeeecC
Q 021218 266 HQDVDGRATNVALGWSVALGSPFTFATT 293 (316)
Q Consensus 266 ~~d~~~~a~e~a~~l~~alG~~~~~~tT 293 (316)
..+++++..+.+.+|++.+| ++++.+
T Consensus 133 ~~~~~~~~~~~v~~l~~~~G--~v~~v~ 158 (266)
T COG0345 133 NANVSEEDKAFVEALLSAVG--KVVEVE 158 (266)
T ss_pred CccCCHHHHHHHHHHHHhcC--CeEEec
Confidence 89999999999999999999 555555
No 10
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.82 E-value=1.1e-19 Score=170.88 Aligned_cols=171 Identities=16% Similarity=0.157 Sum_probs=129.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
|+|+|||+|+||+++|+.|++. |++|.+.++ ++...+.+.+.|.... ..+..+.++++|+||+|+|+...
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~------g~~V~~~d~-~~~~~~~a~~~g~~~~---~~~~~~~~~~aDlVilavp~~~~ 70 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL------GHTVYGVSR-RESTCERAIERGLVDE---ASTDLSLLKDCDLVILALPIGLL 70 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC------CCEEEEEEC-CHHHHHHHHHCCCccc---ccCCHhHhcCCCEEEEcCCHHHH
Confidence 5899999999999999999998 988766654 4556677777776531 22233578999999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccCCCH
Q 021218 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (316)
Q Consensus 192 ~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~ 271 (316)
.++++++.++++++.+|+|+++++...++..... ...||+.|| +.|++ ...+..|....+.|.++++||.++.++
T Consensus 71 ~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~~~---~~~~v~~HP-m~G~~-~~g~~~a~~~lf~g~~~~l~p~~~~~~ 145 (279)
T PRK07417 71 LPPSEQLIPALPPEAIVTDVGSVKAPIVEAWEKL---HPRFVGSHP-MAGTA-ESGVEAGQRGLFKNRPWVLTPTENTDL 145 (279)
T ss_pred HHHHHHHHHhCCCCcEEEeCcchHHHHHHHHHHh---hCCceeeCC-cCCCC-cchHHHhhHHHhCCCcEEEccCCCCCH
Confidence 9999999999999999999999986655531112 235999999 33332 111222222233457999999999999
Q ss_pred HHHHHHHHHHHHcCCCCeeecChhHHH
Q 021218 272 RATNVALGWSVALGSPFTFATTLEQEY 298 (316)
Q Consensus 272 ~a~e~a~~l~~alG~~~~~~tT~~~e~ 298 (316)
++++.++.+++.+| .+++.+++++|=
T Consensus 146 ~~~~~v~~l~~~lG-~~~v~~~~~~hD 171 (279)
T PRK07417 146 NALAIVEELAVSLG-SKIYTADPEEHD 171 (279)
T ss_pred HHHHHHHHHHHHcC-CEEEEcCHHHHH
Confidence 99999999999999 567788888773
No 11
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.81 E-value=4.4e-19 Score=172.69 Aligned_cols=175 Identities=15% Similarity=0.076 Sum_probs=130.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
++|+|||+|+||+++|++|++. |+++.+..++.. .....+...|+.. ....++++++++||+||+|+|++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~------G~~v~i~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~aDlVilavP~~~ 72 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA------GPDVFIIGYDPSAAQLARALGFGVID--ELAADLQRAAAEADLIVLAVPVDA 72 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHhcCCCCc--ccccCHHHHhcCCCEEEEeCCHHH
Confidence 4799999999999999999999 877666554432 2223333445542 223467888999999999999998
Q ss_pred HHHHHHHHHh-cCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccCC
Q 021218 191 QADNYEKIFS-CMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (316)
Q Consensus 191 ~~~vi~ei~~-~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~ 269 (316)
..++++++.+ .++++++|+|+++++...++.....++...+||+.|| +++.+. ..+..++...+.|.++++||.++.
T Consensus 73 ~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HP-MaG~e~-sG~~aa~~~lf~g~~~il~~~~~~ 150 (359)
T PRK06545 73 TAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHP-MAGSHK-SGVAAARADLFENAPWVLTPDDHT 150 (359)
T ss_pred HHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCC-cCcCch-hhHHHhcHHHHCCCcEEEecCCCC
Confidence 8889999987 4899999999999985544322223455678999999 666542 222223333344578999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCeeecChhHH
Q 021218 270 DGRATNVALGWSVALGSPFTFATTLEQE 297 (316)
Q Consensus 270 ~~~a~e~a~~l~~alG~~~~~~tT~~~e 297 (316)
++++++.++++++.+| .+++.++.++|
T Consensus 151 ~~~~~~~v~~l~~~lG-a~~v~~~~~~H 177 (359)
T PRK06545 151 DPDAVAELKDLLSGTG-AKFVVLDAEEH 177 (359)
T ss_pred CHHHHHHHHHHHHHcC-CEEEECCHHHH
Confidence 9999999999999999 56666778877
No 12
>PLN02256 arogenate dehydrogenase
Probab=99.80 E-value=1.7e-18 Score=165.88 Aligned_cols=167 Identities=17% Similarity=0.160 Sum_probs=130.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh-ccCCEEEEccc
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLIS 187 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i-~~ADIViLavp 187 (316)
++ ++|+|||+|+||+++|+.+++. |++|++.+++. ..+.+.+.|+.. ..+.++++ .++|+|++|+|
T Consensus 35 ~~-~kI~IIG~G~mG~slA~~L~~~------G~~V~~~d~~~--~~~~a~~~gv~~----~~~~~e~~~~~aDvVilavp 101 (304)
T PLN02256 35 RK-LKIGIVGFGNFGQFLAKTFVKQ------GHTVLATSRSD--YSDIAAELGVSF----FRDPDDFCEEHPDVVLLCTS 101 (304)
T ss_pred CC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEECcc--HHHHHHHcCCee----eCCHHHHhhCCCCEEEEecC
Confidence 55 8999999999999999999998 88877666553 245666778753 45777776 47999999999
Q ss_pred CchHHHHHHHH-HhcCCCCcEEEEeCCch---hhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEE
Q 021218 188 DAAQADNYEKI-FSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (316)
Q Consensus 188 ~~~~~~vi~ei-~~~mk~gaiLid~aGv~---l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~ii 263 (316)
++...++++++ .++++++++|+|+++++ +..++. .++.+.+||++||+. |++. + ....++.++++
T Consensus 102 ~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~---~l~~~~~~V~~HPma-G~e~------~-~~~~~~~~~~~ 170 (304)
T PLN02256 102 ILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQ---VLPEEFDILCTHPMF-GPES------G-KGGWAGLPFVY 170 (304)
T ss_pred HHHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHH---hCCCCCeEEecCCCC-CCCC------C-ccccCCCeEEE
Confidence 99988999988 68899999999998875 344444 566678999999966 4442 1 11224567777
Q ss_pred eec----cCCCHHHHHHHHHHHHHcCCCCeeecChhHHHhh
Q 021218 264 AVH----QDVDGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (316)
Q Consensus 264 ap~----~d~~~~a~e~a~~l~~alG~~~~~~tT~~~e~~~ 300 (316)
++. ++.++++++.++++|+.+| .+++.+|+++|-+.
T Consensus 171 ~~~~i~~~~~~~~~~~~l~~l~~~lG-a~v~~~~~eeHD~~ 210 (304)
T PLN02256 171 DKVRIGDEGEREARCERFLDIFEEEG-CRMVEMSCEEHDRY 210 (304)
T ss_pred ecceecCCCCCHHHHHHHHHHHHHCC-CEEEEeCHHHHhHH
Confidence 764 5678899999999999999 88999999999653
No 13
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.79 E-value=3.4e-18 Score=160.57 Aligned_cols=158 Identities=13% Similarity=0.153 Sum_probs=125.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC----cEEEEEecCCccc-HHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G----~~Vivg~r~~~~s-~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
|+|+|||+|+||.+++++|.+. | .++++.+|++++. ...+.+.|+.. ..++.+++++||+||+++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~------g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~----~~~~~e~~~~aDvVilav 73 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHA------NVVKGEQITVSNRSNETRLQELHQKYGVKG----THNKKELLTDANILFLAM 73 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCCHHHHHHHHHhcCceE----eCCHHHHHhcCCEEEEEe
Confidence 7999999999999999999987 6 5677766654333 23334457643 457888899999999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEE-eCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEee
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGL-SHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid-~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap 265 (316)
||+...++++++.+.++++++|++ ++|+.+..++. .++.+.+++|.|||+|... + .|.+. +++
T Consensus 74 ~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~~~~~~v~r~mPn~~~~~-------~-----~~~t~-~~~ 137 (279)
T PRK07679 74 KPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LLQKDVPIIRAMPNTSAAI-------L-----KSATA-ISP 137 (279)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCCHHHHH-------h-----cccEE-Eee
Confidence 999999999999888989998886 49999887776 4455678999999988776 3 35664 778
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCCeeecChhHHH
Q 021218 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEY 298 (316)
Q Consensus 266 ~~d~~~~a~e~a~~l~~alG~~~~~~tT~~~e~ 298 (316)
.++.+++..+.++.+++.+|. .+..+ |+++
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~--~~~v~-e~~~ 167 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGL--VSVVE-EEDM 167 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCc--EEEeC-HHHh
Confidence 888999999999999999994 44444 4444
No 14
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.78 E-value=9.6e-18 Score=155.44 Aligned_cols=153 Identities=17% Similarity=0.214 Sum_probs=121.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~----~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
|+|||||+|+||.+++++|.+. |+ ++++..++++...+.+.+.|+.. ..+..++++++|+||+++|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~------g~~~~~~i~v~~~r~~~~~~~~~~~g~~~----~~~~~e~~~~aDvVil~v~ 70 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS------GVVPPSRISTADDSNPARRDVFQSLGVKT----AASNTEVVKSSDVIILAVK 70 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCCcceEEEEeCCCHHHHHHHHHcCCEE----eCChHHHHhcCCEEEEEEC
Confidence 6899999999999999999988 76 67766344444455666778753 4577888999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeec
Q 021218 188 DAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~ 266 (316)
|+...+++.++.+.++++++|+ +++|++...++. .++.. ++++.|||.|... | .+. ..+++.
T Consensus 71 ~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~---~~~~~-~vvr~mP~~~~~~-------~-----~~~-~~l~~~ 133 (266)
T PLN02688 71 PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQE---WAGGR-RVVRVMPNTPCLV-------G-----EAA-SVMSLG 133 (266)
T ss_pred cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHH---HcCCC-CEEEECCCcHHHH-------h-----Cce-EEEEeC
Confidence 9998899999888888998765 678998877765 33333 7999999998876 3 334 447788
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCeeecC
Q 021218 267 QDVDGRATNVALGWSVALGSPFTFATT 293 (316)
Q Consensus 267 ~d~~~~a~e~a~~l~~alG~~~~~~tT 293 (316)
+..+++..+.++.+++.+|. ++..+
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~--~~~~~ 158 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGK--IWVVD 158 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCC--EEEeC
Confidence 88899999999999999995 65554
No 15
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.77 E-value=5.8e-18 Score=159.38 Aligned_cols=155 Identities=15% Similarity=0.183 Sum_probs=121.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC----cEEEEEecCCcccHHH-HHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G----~~Vivg~r~~~~s~~~-A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
|++|+|||+|+||.+++++|++. | .+|++..++.+...+. ..+.+... ...+..++++++|+||+|
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~------g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~---~~~~~~e~~~~aDvVila 71 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLET------EVATPEEIILYSSSKNEHFNQLYDKYPTVE---LADNEAEIFTKCDHSFIC 71 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHC------CCCCcccEEEEeCCcHHHHHHHHHHcCCeE---EeCCHHHHHhhCCEEEEe
Confidence 68999999999999999999987 6 4676666654332222 22232111 134777889999999999
Q ss_pred ccCchHHHHHHHHHhcCCCCcEE-EEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEe
Q 021218 186 ISDAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiL-id~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iia 264 (316)
+|++...++++++.++++++++| ..++|+.+..+++ .+|. .++||+|||+|... | +|++. ++
T Consensus 72 vpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~---~~~~-~~vvR~MPN~~~~~-------g-----~g~t~-~~ 134 (277)
T PRK06928 72 VPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLE---ITPG-LQVSRLIPSLTSAV-------G-----VGTSL-VA 134 (277)
T ss_pred cCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCC-CCEEEEeCccHHHH-------h-----hhcEE-Ee
Confidence 99999999999999988888754 4889999988887 5553 58999999999887 5 67877 78
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCCeeecC
Q 021218 265 VHQDVDGRATNVALGWSVALGSPFTFATT 293 (316)
Q Consensus 265 p~~d~~~~a~e~a~~l~~alG~~~~~~tT 293 (316)
+.++++++..+.++.+++.+| +++..+
T Consensus 135 ~~~~~~~~~~~~v~~l~~~~G--~~~~v~ 161 (277)
T PRK06928 135 HAETVNEANKSRLEETLSHFS--HVMTIR 161 (277)
T ss_pred cCCCCCHHHHHHHHHHHHhCC--CEEEEc
Confidence 888999999999999999999 444443
No 16
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.77 E-value=7.2e-18 Score=157.88 Aligned_cols=164 Identities=18% Similarity=0.199 Sum_probs=124.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~ 189 (316)
|+|+|||+|+||+++|++|++. |+ +|+ +.++++...+.+.+.|+... ..+..++. ++|+||+|+|++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~------g~~~~v~-~~d~~~~~~~~~~~~g~~~~---~~~~~~~~-~aD~Vilavp~~ 69 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK------GLISKVY-GYDHNELHLKKALELGLVDE---IVSFEELK-KCDVIFLAIPVD 69 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc------CCCCEEE-EEcCCHHHHHHHHHCCCCcc---cCCHHHHh-cCCEEEEeCcHH
Confidence 4899999999999999999988 75 444 44444555667777887521 33666655 599999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCC------CchhhHHHHhcCccccCCCceEEE
Q 021218 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAGINSSF 263 (316)
Q Consensus 190 ~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~------pg~~~r~lf~~G~e~~G~G~~~ii 263 (316)
...+++.++.+ ++++++|+|++.++....+..... ....||+.||+. |.....++|. |..+++
T Consensus 70 ~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~--~~~~~v~~hPmaG~e~~Gp~~a~~~l~~--------g~~~il 138 (275)
T PRK08507 70 AIIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH--IRKNFIAAHPMAGTENSGPKAAIKGLYE--------GKVVVL 138 (275)
T ss_pred HHHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh--cCCCEEecCCcCcCchhhHHhccHHHhC--------CCeEEE
Confidence 99999999999 999999999877764433321112 125799999963 3333334444 468889
Q ss_pred eeccCCCHHHHHHHHHHHHHcCCCCeeecChhHHH
Q 021218 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEY 298 (316)
Q Consensus 264 ap~~d~~~~a~e~a~~l~~alG~~~~~~tT~~~e~ 298 (316)
++.++.++++.+.++.+++.+| .+++.+++++|=
T Consensus 139 ~~~~~~~~~~~~~v~~l~~~~G-~~~~~~~~~~hD 172 (275)
T PRK08507 139 CDVEKSGEKHQERAKEIFSGLG-MRIVYMDAKEHD 172 (275)
T ss_pred ecCCCCCHHHHHHHHHHHHHhC-CEEEEeCHHHHH
Confidence 9999899999999999999999 678888888873
No 17
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.77 E-value=4.7e-18 Score=166.90 Aligned_cols=151 Identities=15% Similarity=0.085 Sum_probs=117.8
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
++|+|||+ |+||+++|+.|++. .+.+|+ +.++.. .+ ..+.++.+++||+||||+|+..
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~-----~~~~V~-g~D~~d--------~~-------~~~~~~~v~~aDlVilavPv~~ 63 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTR-----MQLEVI-GHDPAD--------PG-------SLDPATLLQRADVLIFSAPIRH 63 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCCEEE-EEcCCc--------cc-------cCCHHHHhcCCCEEEEeCCHHH
Confidence 79999999 99999999999974 166655 444321 11 2367788999999999999999
Q ss_pred HHHHHHHHHhc---CCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeecc
Q 021218 191 QADNYEKIFSC---MKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (316)
Q Consensus 191 ~~~vi~ei~~~---mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~ 267 (316)
..++++++.++ ++++++|+|+++++-..++. ..+.+.+||++|| +.|++..++ ++|.++++||..
T Consensus 64 ~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~---~~~~~~~fVG~HP-MaG~E~s~l--------f~g~~~iltp~~ 131 (370)
T PRK08818 64 TAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAA---MLASQAEVVGLHP-MTAPPKSPT--------LKGRVMVVCEAR 131 (370)
T ss_pred HHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHH---HHhcCCCEEeeCC-CCCCCCCcc--------cCCCeEEEeCCC
Confidence 99999998875 89999999999998554443 1233567999999 666653333 346899999874
Q ss_pred CCCHHHHHHHHHHHHHcCCCCeeecChhHHH
Q 021218 268 DVDGRATNVALGWSVALGSPFTFATTLEQEY 298 (316)
Q Consensus 268 d~~~~a~e~a~~l~~alG~~~~~~tT~~~e~ 298 (316)
. .+.++.+++|++.+| .+++.+|+++|=
T Consensus 132 ~--~~~~~~v~~l~~~~G-a~v~~~~aeeHD 159 (370)
T PRK08818 132 L--QHWSPWVQSLCSALQ-AECVYATPEHHD 159 (370)
T ss_pred c--hhHHHHHHHHHHHcC-CEEEEcCHHHHH
Confidence 3 356788999999999 689999999983
No 18
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.76 E-value=5.4e-18 Score=158.20 Aligned_cols=161 Identities=21% Similarity=0.226 Sum_probs=119.1
Q ss_pred HHHHHHhhhhhhcCC--cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchHHHHHHHHHhcCC
Q 021218 126 QAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203 (316)
Q Consensus 126 lA~~Lr~~~~~~g~G--~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~vi~ei~~~mk 203 (316)
+|+.|++. | .+ +++.++++...+.|++.|+.++ ..+..+.++++|+||||+|+....++++++.++++
T Consensus 1 ~A~aL~~~------g~~~~-v~g~d~~~~~~~~a~~~g~~~~---~~~~~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~ 70 (258)
T PF02153_consen 1 IALALRKA------GPDVE-VYGYDRDPETLEAALELGIIDE---ASTDIEAVEDADLVVLAVPVSAIEDVLEEIAPYLK 70 (258)
T ss_dssp HHHHHHHT------TTTSE-EEEE-SSHHHHHHHHHTTSSSE---EESHHHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-
T ss_pred ChHHHHhC------CCCeE-EEEEeCCHHHHHHHHHCCCeee---ccCCHhHhcCCCEEEEcCCHHHHHHHHHHhhhhcC
Confidence 57888888 6 44 5677777788899999999842 22336789999999999999999999999999999
Q ss_pred CCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHH
Q 021218 204 PNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283 (316)
Q Consensus 204 ~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~a 283 (316)
+|++|+|+++++...++.....++.+.+||++|| +.|++ +..|...+...+.|.++++||..+.+.++++.++++++.
T Consensus 71 ~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HP-M~G~e-~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~ 148 (258)
T PF02153_consen 71 PGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHP-MAGPE-KSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEA 148 (258)
T ss_dssp TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEE-SCSTS-SSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCHHHHHHHHHhcCcccceeecCC-CCCCc-cccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHH
Confidence 9999999999984443322225567899999999 66775 333444445556679999999999999999999999999
Q ss_pred cCCCCeeecChhHHHh
Q 021218 284 LGSPFTFATTLEQEYR 299 (316)
Q Consensus 284 lG~~~~~~tT~~~e~~ 299 (316)
+|+ +++.+|+++|=+
T Consensus 149 ~Ga-~~~~~~~eeHD~ 163 (258)
T PF02153_consen 149 LGA-RVVEMDAEEHDR 163 (258)
T ss_dssp CT--EEEE--HHHHHH
T ss_pred CCC-EEEEcCHHHHHH
Confidence 996 788999999944
No 19
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.75 E-value=2.4e-17 Score=156.65 Aligned_cols=169 Identities=20% Similarity=0.241 Sum_probs=129.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~ 189 (316)
++|+|||+|+||.++|+.|++. |+ +|++.+++ +...+.+++.|... ....+.+++++++|+||+|+|+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~------g~~~~V~~~dr~-~~~~~~a~~~g~~~--~~~~~~~~~~~~aDvViiavp~~ 77 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL------GLAGEIVGADRS-AETRARARELGLGD--RVTTSAAEAVKGADLVILCVPVG 77 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCcEEEEEECC-HHHHHHHHhCCCCc--eecCCHHHHhcCCCEEEECCCHH
Confidence 7999999999999999999988 74 66655544 45566777777642 12346778899999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCC------CchhhHHHHhcCccccCCCceEEE
Q 021218 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAGINSSF 263 (316)
Q Consensus 190 ~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~------pg~~~r~lf~~G~e~~G~G~~~ii 263 (316)
...++++++.++++++.+|+|+++++...++......+.++.|+..||.. ++....++|. |.++++
T Consensus 78 ~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~--------g~~~~l 149 (307)
T PRK07502 78 ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELFE--------NRWCIL 149 (307)
T ss_pred HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHHC--------CCeEEE
Confidence 88889999989999999999999887544332112445677899999943 1222233443 468999
Q ss_pred eeccCCCHHHHHHHHHHHHHcCCCCeeecChhHHH
Q 021218 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEY 298 (316)
Q Consensus 264 ap~~d~~~~a~e~a~~l~~alG~~~~~~tT~~~e~ 298 (316)
+|....++++++.++.+++.+| .+++.++.++|=
T Consensus 150 ~~~~~~~~~~~~~~~~l~~~lG-~~~~~~~~~~hD 183 (307)
T PRK07502 150 TPPEGTDPAAVARLTAFWRALG-ARVEEMDPEHHD 183 (307)
T ss_pred eCCCCCCHHHHHHHHHHHHHcC-CEEEEcCHHHHh
Confidence 9998889999999999999999 467778888874
No 20
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.74 E-value=5.3e-17 Score=162.38 Aligned_cols=163 Identities=17% Similarity=0.195 Sum_probs=130.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
|+|+||| +|.||.++|+.|++. |++|.+..++.+...+.+.+.|+.. ..+..++++++|+||+|+|++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~------G~~V~v~~r~~~~~~~~a~~~gv~~----~~~~~e~~~~aDvVIlavp~~~ 70 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK------GFEVIVTGRDPKKGKEVAKELGVEY----ANDNIDAAKDADIVIISVPINV 70 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC------CCEEEEEECChHHHHHHHHHcCCee----ccCHHHHhccCCEEEEecCHHH
Confidence 5899997 899999999999998 8888777766544345667777642 3477888999999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCCch---hhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeecc
Q 021218 191 QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (316)
Q Consensus 191 ~~~vi~ei~~~mk~gaiLid~aGv~---l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~ 267 (316)
..++++++.++++++++|+|+++++ ...++. .++.+..||++|| +.|+.. ..| .|..++++|.+
T Consensus 71 ~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~---~~~~~~~~V~~HP-maGp~~-~~~--------~g~~~il~p~~ 137 (437)
T PRK08655 71 TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEE---YAPEGVEILPTHP-MFGPRT-PSL--------KGQVVILTPTE 137 (437)
T ss_pred HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHH---hcCCCCEEEEcCC-CCCCCC-ccc--------CCCEEEEecCC
Confidence 8889999999999999999999875 334443 5566789999999 434431 122 34688899998
Q ss_pred CCCHHHHHHHHHHHHHcCCCCeeecChhHHH
Q 021218 268 DVDGRATNVALGWSVALGSPFTFATTLEQEY 298 (316)
Q Consensus 268 d~~~~a~e~a~~l~~alG~~~~~~tT~~~e~ 298 (316)
+.++++.+.++++++.+| .+++.+++++|-
T Consensus 138 ~~~~~~~~~v~~ll~~~G-~~v~~~~~e~HD 167 (437)
T PRK08655 138 KRSNPWFDKVKNFLEKEG-ARVIVTSPEEHD 167 (437)
T ss_pred CCCHHHHHHHHHHHHHcC-CEEEECCHHHHH
Confidence 889999999999999999 567889999884
No 21
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.73 E-value=6.4e-17 Score=150.03 Aligned_cols=148 Identities=18% Similarity=0.246 Sum_probs=116.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC---cEEEEEecCCcccHHHHHH-CCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G---~~Vivg~r~~~~s~~~A~~-~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
|++|+|||+|+||.++++.+.+. | .+|.+.+|+. +..+...+ .|+.. ..+..++++++|+|++++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~------g~~~~~v~v~~r~~-~~~~~~~~~~g~~~----~~~~~~~~~~advVil~v 70 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS------GVPAKDIIVSDPSP-EKRAALAEEYGVRA----ATDNQEAAQEADVVVLAV 70 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC------CCCcceEEEEcCCH-HHHHHHHHhcCCee----cCChHHHHhcCCEEEEEc
Confidence 58999999999999999999987 6 4666666654 33333333 46542 457778889999999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeec
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~ 266 (316)
|++...++++++.+++ +..+|.+++|++...++. .++.+.+++++|||.|... | .|.+ .+++.
T Consensus 71 ~~~~~~~v~~~l~~~~-~~~vvs~~~gi~~~~l~~---~~~~~~~iv~~~P~~p~~~-------~-----~~~~-~i~~~ 133 (267)
T PRK11880 71 KPQVMEEVLSELKGQL-DKLVVSIAAGVTLARLER---LLGADLPVVRAMPNTPALV-------G-----AGMT-ALTAN 133 (267)
T ss_pred CHHHHHHHHHHHHhhc-CCEEEEecCCCCHHHHHH---hcCCCCcEEEecCCchHHH-------c-----CceE-EEecC
Confidence 9999999999988877 334556889998877775 4555678999999998654 3 3444 58888
Q ss_pred cCCCHHHHHHHHHHHHHcCC
Q 021218 267 QDVDGRATNVALGWSVALGS 286 (316)
Q Consensus 267 ~d~~~~a~e~a~~l~~alG~ 286 (316)
++.++++.+.++.+++.+|.
T Consensus 134 ~~~~~~~~~~v~~l~~~lG~ 153 (267)
T PRK11880 134 ALVSAEDRELVENLLSAFGK 153 (267)
T ss_pred CCCCHHHHHHHHHHHHhCCe
Confidence 89999999999999999994
No 22
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.73 E-value=7.5e-17 Score=150.44 Aligned_cols=154 Identities=19% Similarity=0.272 Sum_probs=119.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~----~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
+||+|||+|+||++++++|.+. +. ++++.+++ ... .++.. ..++.++++++|+||||+|
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~------~~~~~~~i~~~~~~-~~~------~~~~~----~~~~~~~~~~~D~Vilavk 66 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS------NIIGKENIYYHTPS-KKN------TPFVY----LQSNEELAKTCDIIVLAVK 66 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC------CCCCcceEEEECCC-hhc------CCeEE----eCChHHHHHhCCEEEEEeC
Confidence 7899999999999999999987 52 35444433 211 23331 3477788899999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeecc
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~ 267 (316)
|+...++++++.++++++.+|++++|+++..++. .++....++|.|||+|... | .|. +.+++.+
T Consensus 67 p~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~---~~~~~~~vvr~mPn~p~~~-------g-----~g~-t~i~~~~ 130 (260)
T PTZ00431 67 PDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEE---MVGVEAKIVRVMPNTPSLV-------G-----QGS-LVFCANN 130 (260)
T ss_pred HHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHH---HcCCCCeEEEECCCchhHh-------c-----cee-EEEEeCC
Confidence 9999999999998887777788999999888886 5555567899999998654 3 344 5588999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCeeecChhHHHhhcch
Q 021218 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIF 303 (316)
Q Consensus 268 d~~~~a~e~a~~l~~alG~~~~~~tT~~~e~~~dl~ 303 (316)
+.+++..+.++++|+.+| .+++.+ |+ .-|.+
T Consensus 131 ~~~~~~~~~v~~l~~~~G--~~~~v~-E~--~~d~~ 161 (260)
T PTZ00431 131 NVDSTDKKKVIDIFSACG--IIQEIK-EK--DMDIA 161 (260)
T ss_pred CCCHHHHHHHHHHHHhCC--cEEEEC-hH--Hcchh
Confidence 999999999999999999 444443 33 44655
No 23
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.69 E-value=5.9e-16 Score=141.49 Aligned_cols=150 Identities=17% Similarity=0.222 Sum_probs=116.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC---cE-EEEEecCCcccH-HHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IV-VKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G---~~-Vivg~r~~~~s~-~~A~~~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
+||+|||.|+||.++++++.+. + .+ +++..|++.+.. +.+.+.++.. ..+.+++++++|+|++++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~DiViiav 74 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKT------SKEYIEEIIVSNRSNVEKLDQLQARYNVST----TTDWKQHVTSVDTIVLAM 74 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCCCcCeEEEECCCCHHHHHHHHHHcCcEE----eCChHHHHhcCCEEEEec
Confidence 7899999999999999999876 5 23 445555443333 3344456542 457888999999999999
Q ss_pred cCchHHHHHHHHHhcCCCCcE-EEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEee
Q 021218 187 SDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gai-Lid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap 265 (316)
|++.+.++++++.++++ +++ |..++|+.+..++. .++.+..++++|||.+... | .|.+. ++.
T Consensus 75 p~~~~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~---~~~~~~~v~r~~Pn~a~~v-------~-----~g~~~-~~~ 137 (245)
T PRK07634 75 PPSAHEELLAELSPLLS-NQLVVTVAAGIGPSYLEE---RLPKGTPVAWIMPNTAAEI-------G-----KSISL-YTM 137 (245)
T ss_pred CHHHHHHHHHHHHhhcc-CCEEEEECCCCCHHHHHH---HcCCCCeEEEECCcHHHHH-------h-----cCCeE-Eee
Confidence 99999999998888776 455 45889999988886 5666678999999998755 4 57777 456
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCC
Q 021218 266 HQDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 266 ~~d~~~~a~e~a~~l~~alG~~~ 288 (316)
..+.+++..+.++++++.+|...
T Consensus 138 ~~~~~~~~~~~v~~lf~~~G~~~ 160 (245)
T PRK07634 138 GQSVNETHKETLQLILKGIGTSQ 160 (245)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEE
Confidence 66789999999999999999554
No 24
>PLN02712 arogenate dehydrogenase
Probab=99.68 E-value=6.2e-16 Score=161.99 Aligned_cols=173 Identities=12% Similarity=0.062 Sum_probs=124.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc-cCCEEE
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVL 183 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~-~ADIVi 183 (316)
..++++ ++|||||+|+||+++|++|++. |++|++.++.. . .+.+.+.|+.. ..+.++++. ++|+||
T Consensus 364 ~~~~~~-~kIgIIGlG~mG~slA~~L~~~------G~~V~~~dr~~-~-~~~a~~~Gv~~----~~~~~el~~~~aDvVI 430 (667)
T PLN02712 364 VNDGSK-LKIAIVGFGNFGQFLAKTMVKQ------GHTVLAYSRSD-Y-SDEAQKLGVSY----FSDADDLCEEHPEVIL 430 (667)
T ss_pred cCCCCC-CEEEEEecCHHHHHHHHHHHHC------cCEEEEEECCh-H-HHHHHHcCCeE----eCCHHHHHhcCCCEEE
Confidence 466788 9999999999999999999998 88887666653 2 25566778653 457778775 599999
Q ss_pred EcccCchHHHHHHHHHh-cCCCCcEEEEeCCch---hhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCc
Q 021218 184 LLISDAAQADNYEKIFS-CMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (316)
Q Consensus 184 Lavp~~~~~~vi~ei~~-~mk~gaiLid~aGv~---l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~ 259 (316)
+|+|+....++++++.. .+++|++|+|+++++ ...++. .++.+.+||+.||+.....-+..|.+ ......|.
T Consensus 431 LavP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~---~l~~~~~~v~~HPm~G~e~~~~G~~~-~~~lf~~~ 506 (667)
T PLN02712 431 LCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQ---HLPQDFDILCTHPMFGPESGKNGWNN-LAFVFDKV 506 (667)
T ss_pred ECCChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHH---hccCCCceEeeCCCCCccccccchhh-hhhhccCc
Confidence 99999988899998765 789999999998775 344444 56778899999995533321111111 11111221
Q ss_pred eEEEeeccCCCHHHHHHHHHHHHHcCCCCeeecChhHHH
Q 021218 260 NSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEY 298 (316)
Q Consensus 260 ~~iiap~~d~~~~a~e~a~~l~~alG~~~~~~tT~~~e~ 298 (316)
+...+....+.++.++++|..+| .+++++|+++|-
T Consensus 507 ---~v~~~~~~~~~~~~l~~l~~~lG-a~vv~ms~eeHD 541 (667)
T PLN02712 507 ---RIGSDDRRVSRCDSFLDIFAREG-CRMVEMSCAEHD 541 (667)
T ss_pred ---EeCCCcchHHHHHHHHHHHHHcC-CEEEEeCHHHHH
Confidence 12233334456677789999999 688899999995
No 25
>PLN02712 arogenate dehydrogenase
Probab=99.67 E-value=1e-15 Score=160.32 Aligned_cols=166 Identities=16% Similarity=0.158 Sum_probs=122.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh-ccCCEEEEcccCch
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i-~~ADIViLavp~~~ 190 (316)
++|||||+|+||+++|++|++. |++|++.+++. ..+.+.+.|+.. ..+.++++ +++|+|++|+|+..
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~------G~~V~~~dr~~--~~~~A~~~Gv~~----~~d~~e~~~~~aDvViLavP~~~ 120 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQ------GHTVLAHSRSD--HSLAARSLGVSF----FLDPHDLCERHPDVILLCTSIIS 120 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCCH--HHHHHHHcCCEE----eCCHHHHhhcCCCEEEEcCCHHH
Confidence 8999999999999999999998 88877666552 235677788763 45777755 57999999999998
Q ss_pred HHHHHHHHH-hcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhH-HHHhcCccccCCCceEEEee---
Q 021218 191 QADNYEKIF-SCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR-RLYVQGKEINGAGINSSFAV--- 265 (316)
Q Consensus 191 ~~~vi~ei~-~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r-~lf~~G~e~~G~G~~~iiap--- 265 (316)
..++++++. ++++++++|+|+.+++...++.....+|++.+||+.||+ .|++.. ..+ .|..+++++
T Consensus 121 ~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPM-aG~e~~~~g~--------~~~~~~~~~~~~ 191 (667)
T PLN02712 121 TENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPM-FGPQSAKHGW--------DGLRFVYEKVRI 191 (667)
T ss_pred HHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCc-CCCccccchh--------ccCcEEEeeccC
Confidence 888999875 789999999999988743222111255778899999993 355421 111 234566663
Q ss_pred -ccCCCHHHHHHHHHHHHHcCCCCeeecChhHHHh
Q 021218 266 -HQDVDGRATNVALGWSVALGSPFTFATTLEQEYR 299 (316)
Q Consensus 266 -~~d~~~~a~e~a~~l~~alG~~~~~~tT~~~e~~ 299 (316)
++....+.++.++++|+.+| .+++++|+++|-+
T Consensus 192 ~~~~~~~~~~~~l~~l~~~lG-a~v~~ms~eeHD~ 225 (667)
T PLN02712 192 GNEELRVSRCKSFLEVFEREG-CKMVEMSCTEHDK 225 (667)
T ss_pred CCccccHHHHHHHHHHHHHcC-CEEEEeCHHHHHH
Confidence 33334456777889999999 6899999999853
No 26
>PRK07680 late competence protein ComER; Validated
Probab=99.66 E-value=1.9e-15 Score=141.47 Aligned_cols=147 Identities=16% Similarity=0.205 Sum_probs=111.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhhccCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~----~Vivg~r~~~~s~~~A~~~-G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
|+|+|||+|+||.+++++|.+. |. +|.+..|+.++....+.+. |+.. ..+..++++++|+||+++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~------g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~----~~~~~~~~~~aDiVilav 70 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES------GAVKPSQLTITNRTPAKAYHIKERYPGIHV----AKTIEEVISQSDLIFICV 70 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCHHHHHHHHHHcCCeEE----ECCHHHHHHhCCEEEEec
Confidence 4799999999999999999988 63 5666666543322223333 5542 357788899999999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEee
Q 021218 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap 265 (316)
||+...++++++.++++++++|+ .++|+++..++. .++ ..++++|||++... + .|... ++.
T Consensus 71 ~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~---~~~--~~~~r~~p~~~~~~-------~-----~G~t~-~~~ 132 (273)
T PRK07680 71 KPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLET---LVP--CQVARIIPSITNRA-------L-----SGASL-FTF 132 (273)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcC--CCEEEECCChHHHH-------h-----hccEE-Eee
Confidence 99999999999999998888877 456788777775 444 36899999987544 2 35554 555
Q ss_pred ccCCCHHHHHHHHHHHHHcCC
Q 021218 266 HQDVDGRATNVALGWSVALGS 286 (316)
Q Consensus 266 ~~d~~~~a~e~a~~l~~alG~ 286 (316)
....+++..+.++.++..+|.
T Consensus 133 g~~~~~~~~~~~~~ll~~~G~ 153 (273)
T PRK07680 133 GSRCSEEDQQKLERLFSNIST 153 (273)
T ss_pred CCCCCHHHHHHHHHHHHcCCC
Confidence 666788889999999999994
No 27
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.63 E-value=3.7e-15 Score=146.31 Aligned_cols=150 Identities=15% Similarity=0.120 Sum_probs=112.9
Q ss_pred CCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccC
Q 021218 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (316)
Q Consensus 110 G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~ 188 (316)
.+++|+||| +|.||+++|+.|++. |++|.+.+++. . .+.++++++||+||+|+|+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~------G~~V~~~d~~~-----------~-------~~~~~~~~~aDlVilavP~ 152 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS------GYQVRILEQDD-----------W-------DRAEDILADAGMVIVSVPI 152 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC------CCeEEEeCCCc-----------c-------hhHHHHHhcCCEEEEeCcH
Confidence 448999999 999999999999999 98887776531 0 1456788999999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccC
Q 021218 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (316)
Q Consensus 189 ~~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d 268 (316)
....++++++.+ +++|++|+|+++++...+.......+ .+||+.|| +.|++. ..| .|..+++ .+.
T Consensus 153 ~~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HP-m~G~~~-~~~--------~~~~vv~--~~~ 217 (374)
T PRK11199 153 HLTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHP-MFGPDV-GSL--------AKQVVVV--CDG 217 (374)
T ss_pred HHHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCC-CCCCCC-ccc--------CCCEEEE--cCC
Confidence 999999999888 99999999999986433322111223 26999999 434431 111 2344544 445
Q ss_pred CCHHHHHHHHHHHHHcCCCCeeecChhHHHh
Q 021218 269 VDGRATNVALGWSVALGSPFTFATTLEQEYR 299 (316)
Q Consensus 269 ~~~~a~e~a~~l~~alG~~~~~~tT~~~e~~ 299 (316)
.++++++.++.+++.+| .+++.+|+++|=+
T Consensus 218 ~~~~~~~~~~~l~~~lG-~~v~~~~~~~HD~ 247 (374)
T PRK11199 218 RQPEAYQWLLEQIQVWG-ARLHRISAVEHDQ 247 (374)
T ss_pred CCchHHHHHHHHHHHCC-CEEEECCHHHHHH
Confidence 66788999999999999 6889999999843
No 28
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.62 E-value=9.9e-15 Score=153.55 Aligned_cols=164 Identities=18% Similarity=0.209 Sum_probs=124.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~ 189 (316)
++|+|||+|+||.++++.+++. |+ +|++.++ ++...+.+.+.|+.. ....+.+++++++|+|++|+|++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~------G~~~~V~~~d~-~~~~~~~a~~~g~~~--~~~~~~~~~~~~aDvVilavp~~ 74 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER------GLAREVVAVDR-RAKSLELAVSLGVID--RGEEDLAEAVSGADVIVLAVPVL 74 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCCEEEEEEC-ChhHHHHHHHCCCCC--cccCCHHHHhcCCCEEEECCCHH
Confidence 7899999999999999999998 73 6555554 444566677788752 12346788899999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeCCch---hhhhhccccCCCC-CccEEEeccCCCchh-------hHHHHhcCccccCCC
Q 021218 190 AQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPK-NIGVIAVCPKGMGPS-------VRRLYVQGKEINGAG 258 (316)
Q Consensus 190 ~~~~vi~ei~~~mk~gaiLid~aGv~---l~~l~~~~~~~~~-~i~vI~vhPn~pg~~-------~r~lf~~G~e~~G~G 258 (316)
...++++++.++++++.+|+|+++++ +..++. .++. .++|+..||. .|.+ ..++|. |
T Consensus 75 ~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~---~~~~~~~r~~~~hPm-~G~~~~g~~~a~~~l~~--------~ 142 (735)
T PRK14806 75 AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARA---VFGELPAGFVPGHPI-AGSEKSGVHAANADLFR--------N 142 (735)
T ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHH---hccccCCeEEecCCc-CcCCcchhhhhhhHHhC--------C
Confidence 88889999999999999999999987 555554 3332 3456666662 1222 123444 3
Q ss_pred ceEEEeeccCCCHHHHHHHHHHHHHcCCCCeeecChhHH
Q 021218 259 INSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQE 297 (316)
Q Consensus 259 ~~~iiap~~d~~~~a~e~a~~l~~alG~~~~~~tT~~~e 297 (316)
.+++++|.++.++++.+.++++++.+| .+++..+.++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~~~G-~~~~~~~~~~h 180 (735)
T PRK14806 143 HKVILTPLAETDPAALARVDRLWRAVG-ADVLHMDVAHH 180 (735)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHcC-CEEEEcCHHHH
Confidence 578899999999999999999999999 56777777776
No 29
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=99.62 E-value=4.2e-15 Score=143.79 Aligned_cols=168 Identities=23% Similarity=0.255 Sum_probs=121.7
Q ss_pred cccchhhHHhhcCCcccc-----ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH
Q 021218 85 SLADRDEYIVRGGRDLFN-----LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA 159 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F~-----~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~ 159 (316)
++..+++.+ |.|.|..+ ++..+++| ||+||||+|.||+++|+.++.+ |++|+++.++.. .+...+
T Consensus 117 ~~~~~~~~~-r~g~w~~~~~~~~~~~~~l~g-ktvGIiG~GrIG~avA~r~~~F------gm~v~y~~~~~~--~~~~~~ 186 (324)
T COG1052 117 RIHEGDRRV-REGNWSLSGGPDPLLGFDLRG-KTLGIIGLGRIGQAVARRLKGF------GMKVLYYDRSPN--PEAEKE 186 (324)
T ss_pred chHHHHHHH-hcCcccccCCcccccccCCCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCCC--hHHHhh
Confidence 577788885 99999664 34579999 9999999999999999999998 999888877643 223333
Q ss_pred CCceecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCc
Q 021218 160 AGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNI 230 (316)
Q Consensus 160 ~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i 230 (316)
.++. ..+++|++++||+|+|+||.+..+. +++ +.++.||+|++|+.++ |-. +.-+++ +..-..+.
T Consensus 187 ~~~~-----y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~-g~i~gagl 260 (324)
T COG1052 187 LGAR-----YVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKS-GKIAGAGL 260 (324)
T ss_pred cCce-----eccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh-CCcceEEe
Confidence 3344 3469999999999999999999987 776 7899999999999654 422 334444 33335678
Q ss_pred cEEEeccCCCchhhHHHHhcCccccCCCceEEEeecc-CCCHHHHHH
Q 021218 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (316)
Q Consensus 231 ~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~-d~~~~a~e~ 276 (316)
+|.--.|....+...++-.. =+.+++||. ..+.++++.
T Consensus 261 DV~e~Ep~~~d~~l~~l~~~--------~~vvltPHia~at~ea~~~ 299 (324)
T COG1052 261 DVFENEPALFDHPLLRLDNF--------PNVVLTPHIASATEEARKA 299 (324)
T ss_pred eecCCCCCCCChhHhhccCC--------CCEEEccccccccHHHHHH
Confidence 88888886544433222111 248899987 334444443
No 30
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.61 E-value=7.4e-15 Score=136.22 Aligned_cols=142 Identities=16% Similarity=0.149 Sum_probs=104.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcE---EEEEecCCcccHHHHHHC-CceecCCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV---VKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~---Vivg~r~~~~s~~~A~~~-G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
|+|||||+|+||.+++++|++. |+. +.+..|+.++..+.+.+. |... ..+..++++++|+|++++|
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~------g~~~~~i~v~~r~~~~~~~l~~~~~~~~~----~~~~~~~~~~aDvVilav~ 70 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS------PADVSEIIVSPRNAQIAARLAERFPKVRI----AKDNQAVVDRSDVVFLAVR 70 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCChheEEEECCCHHHHHHHHHHcCCceE----eCCHHHHHHhCCEEEEEeC
Confidence 4899999999999999999987 642 345555433333333434 3432 4578888999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeec
Q 021218 188 DAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~ 266 (316)
|+...++++++ . ++++++|+ +++|+++..++. .++.+..+++.|||+|... + .|.+. +++.
T Consensus 71 p~~~~~vl~~l-~-~~~~~~vis~~ag~~~~~l~~---~~~~~~~~~r~~P~~~~a~-------~-----~g~t~-~~~~ 132 (258)
T PRK06476 71 PQIAEEVLRAL-R-FRPGQTVISVIAATDRAALLE---WIGHDVKLVRAIPLPFVAE-------R-----KGVTA-IYPP 132 (258)
T ss_pred HHHHHHHHHHh-c-cCCCCEEEEECCCCCHHHHHH---HhCCCCCEEEECCCChhhh-------C-----CCCeE-ecCC
Confidence 98888888876 2 56787765 778899888886 5555678999999988876 3 45666 4443
Q ss_pred cCCCHHHHHHHHHHHHHcCCCC
Q 021218 267 QDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 267 ~d~~~~a~e~a~~l~~alG~~~ 288 (316)
.+.++.+++.+|...
T Consensus 133 -------~~~~~~l~~~lG~~~ 147 (258)
T PRK06476 133 -------DPFVAALFDALGTAV 147 (258)
T ss_pred -------HHHHHHHHHhcCCcE
Confidence 257899999999543
No 31
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=99.58 E-value=1.4e-14 Score=140.09 Aligned_cols=176 Identities=22% Similarity=0.219 Sum_probs=125.7
Q ss_pred cccchhhHHhhcCCcccccc-ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCce
Q 021218 85 SLADRDEYIVRGGRDLFNLL-PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F~~~-~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (316)
++..|++.+ |+|+|+-... ..+|.| ||+||||+|.||..+|+.++.+ |++|+.+++..++. .+...+..
T Consensus 117 ~~~~~~~~~-~~g~W~~~~~~g~el~g-kTvGIiG~G~IG~~va~~l~af------gm~v~~~d~~~~~~--~~~~~~~~ 186 (324)
T COG0111 117 RIPDADASQ-RRGEWDRKAFRGTELAG-KTVGIIGLGRIGRAVAKRLKAF------GMKVIGYDPYSPRE--RAGVDGVV 186 (324)
T ss_pred CchhhHHHH-HcCCccccccccccccC-CEEEEECCCHHHHHHHHHHHhC------CCeEEEECCCCchh--hhccccce
Confidence 577888886 9999975222 459999 9999999999999999999999 99988777633322 33334443
Q ss_pred ecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEEE
Q 021218 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIA 234 (316)
Q Consensus 164 ~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI~ 234 (316)
. ..++++++++||+|++|+|.+..++ +++ +.+..||+|++++.++ |-. +..+++ +......++|..
T Consensus 187 ~----~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~-G~i~gA~lDVf~ 261 (324)
T COG0111 187 G----VDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDS-GKIAGAALDVFE 261 (324)
T ss_pred e----cccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHc-CCcceEEecCCC
Confidence 2 4589999999999999999999987 776 7899999999999664 432 444554 333346788888
Q ss_pred eccCCCchhhHHHHhcCccccCCCceEEEeecc-CCCHHHHHH-----HHHHHHHcCC
Q 021218 235 VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV-----ALGWSVALGS 286 (316)
Q Consensus 235 vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~-d~~~~a~e~-----a~~l~~alG~ 286 (316)
..|..+.+. ++.- =|.++|||- ..+.++.+. ++++.+.+..
T Consensus 262 ~EPl~~~~p---L~~~--------pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l~g 308 (324)
T COG0111 262 EEPLPADSP---LWDL--------PNVILTPHIGGSTDEAQERVAEIVAENIVRYLAG 308 (324)
T ss_pred CCCCCCCCh---hhcC--------CCeEECCcccccCHHHHHHHHHHHHHHHHHHHcC
Confidence 888666633 3443 357789986 333443333 3444444443
No 32
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.55 E-value=9.7e-14 Score=130.33 Aligned_cols=154 Identities=17% Similarity=0.155 Sum_probs=116.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHH-----------HHHHCCceecC---------CCcC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-----------EARAAGFTEEN---------GTLG 170 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~-----------~A~~~G~~~~~---------~t~~ 170 (316)
|++|+|||.|.||.++|..+... |++|++.+++.+ ..+ ...+.|..... ....
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~------g~~V~~~d~~~~-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~ 75 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVA------GYDVVMVDISDA-AVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTT 75 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHC------CCceEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC
Confidence 47899999999999999999998 988877665433 222 23344421000 0023
Q ss_pred CHHhhhccCCEEEEcccCchH--HHHHHHHHhcCCCCcEE-EEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHH
Q 021218 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (316)
Q Consensus 171 ~~~e~i~~ADIViLavp~~~~--~~vi~ei~~~mk~gaiL-id~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~l 247 (316)
+.+ .+++||+||+++|++.. .++++++.++++++++| ++++|+++..+.. .++...++++.||+.|.+.+
T Consensus 76 ~~~-~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~---~~~~~~r~ig~h~~~P~~~~--- 148 (282)
T PRK05808 76 DLD-DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAA---ATKRPDKVIGMHFFNPVPVM--- 148 (282)
T ss_pred CHH-HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hhCCCcceEEeeccCCcccC---
Confidence 444 57999999999998877 45889999999999988 5889998887776 33344579999999998873
Q ss_pred HhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 248 f~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
.++ -+++...++++..+.++.++..+|..-+
T Consensus 149 ---------~~v--ev~~g~~t~~e~~~~~~~l~~~lGk~pv 179 (282)
T PRK05808 149 ---------KLV--EIIRGLATSDATHEAVEALAKKIGKTPV 179 (282)
T ss_pred ---------ccE--EEeCCCCCCHHHHHHHHHHHHHcCCeeE
Confidence 233 2788999999999999999999996543
No 33
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=99.55 E-value=3.2e-14 Score=136.62 Aligned_cols=164 Identities=15% Similarity=0.149 Sum_probs=115.2
Q ss_pred ccchhhHHhhcCCcccc----cc---ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHH
Q 021218 86 LADRDEYIVRGGRDLFN----LL---PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR 158 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F~----~~---~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~ 158 (316)
+..+++.+ |+|+|... .. ..+|.| |++||||+|.||..+|+.++.+ |++|+++++.... .
T Consensus 115 ~~~~~~~~-~~g~w~~~~~~~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------gm~V~~~d~~~~~-----~ 181 (311)
T PRK08410 115 INYYDRYV-KSGEYSESPIFTHISRPLGEIKG-KKWGIIGLGTIGKRVAKIAQAF------GAKVVYYSTSGKN-----K 181 (311)
T ss_pred HHHHHHHH-HcCCCCcCCCccccCccccccCC-CEEEEECCCHHHHHHHHHHhhc------CCEEEEECCCccc-----c
Confidence 55667775 99999521 11 368999 9999999999999999999999 9998777654221 1
Q ss_pred HCCceecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCC
Q 021218 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKN 229 (316)
Q Consensus 159 ~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~ 229 (316)
..++. ..+++|++++||+|++|+|.+..++ +++ +.++.||||++++.++ |-. +..+++ +... ..
T Consensus 182 ~~~~~-----~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~-g~i~-Aa 254 (311)
T PRK08410 182 NEEYE-----RVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDE-KDIY-AG 254 (311)
T ss_pred ccCce-----eecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHc-CCeE-EE
Confidence 23443 3489999999999999999999987 776 7999999999999654 421 344554 2232 56
Q ss_pred ccEEEeccCCCchhhHHHHhcCccccCCCceEEEeecc-CCCHHHHHHH
Q 021218 230 IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVA 277 (316)
Q Consensus 230 i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~-d~~~~a~e~a 277 (316)
.+|....|..+.+...++-.. -|.+++||- ..+.++.+.+
T Consensus 255 LDV~~~EP~~~~~pL~~~~~~--------~NvilTPH~a~~t~e~~~~~ 295 (311)
T PRK08410 255 LDVLEKEPMEKNHPLLSIKNK--------EKLLITPHIAWASKEARKTL 295 (311)
T ss_pred EecCCCCCCCCCChhhccCCC--------CCEEECCccccCCHHHHHHH
Confidence 777778885444332111000 278999985 3455555544
No 34
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=99.54 E-value=1e-14 Score=128.88 Aligned_cols=156 Identities=23% Similarity=0.243 Sum_probs=107.5
Q ss_pred ccchhhHHhhcCCc--cccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCce
Q 021218 86 LADRDEYIVRGGRD--LFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (316)
Q Consensus 86 l~~~~e~vv~~G~w--~F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (316)
+..|++.+ ++|+| .-.....+|.| ++|||||+|.||.++|+.++.+ |++|+++++.... .......++.
T Consensus 11 ~~~~~~~~-~~~~W~~~~~~~~~~l~g-~tvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~~~-~~~~~~~~~~ 81 (178)
T PF02826_consen 11 LPEYHEAQ-RNGEWASRERFPGRELRG-KTVGIIGYGRIGRAVARRLKAF------GMRVIGYDRSPKP-EEGADEFGVE 81 (178)
T ss_dssp HHHHHHHH-HTTBHHHHTTTTBS-STT-SEEEEESTSHHHHHHHHHHHHT------T-EEEEEESSCHH-HHHHHHTTEE
T ss_pred HHHHHHHH-HcCCCCCCcCCCccccCC-CEEEEEEEcCCcCeEeeeeecC------CceeEEecccCCh-hhhcccccce
Confidence 55677775 99999 22223689999 9999999999999999999999 9998877776432 2235566665
Q ss_pred ecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEEE
Q 021218 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIA 234 (316)
Q Consensus 164 ~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI~ 234 (316)
..+++|++++||+|++|+|.+..++ +++ +.+..||+|++++.++ |-. +..+++ +.......+|..
T Consensus 82 -----~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~-g~i~ga~lDV~~ 155 (178)
T PF02826_consen 82 -----YVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALES-GKIAGAALDVFE 155 (178)
T ss_dssp -----ESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHT-TSEEEEEESS-S
T ss_pred -----eeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhh-ccCceEEEECCC
Confidence 4599999999999999999999886 776 7999999999999764 422 334443 111123455566
Q ss_pred eccCCCchhhHHHHhcCccccCCCceEEEeecc
Q 021218 235 VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (316)
Q Consensus 235 vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~ 267 (316)
..|-.+.+ .++.. -|.+++||-
T Consensus 156 ~EP~~~~~---~l~~~--------~nvi~TPH~ 177 (178)
T PF02826_consen 156 PEPLPADS---PLWDL--------PNVILTPHI 177 (178)
T ss_dssp SSSSSTTH---HHHTS--------TTEEEESS-
T ss_pred CCCCCCCC---hHHcC--------CCEEEeCcc
Confidence 66644332 33333 368889983
No 35
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.54 E-value=1.6e-13 Score=130.26 Aligned_cols=154 Identities=13% Similarity=0.170 Sum_probs=114.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-----CCceecC----------CCcCCHHhh
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEEN----------GTLGDIYET 175 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-----~G~~~~~----------~t~~~~~e~ 175 (316)
|++|+|||.|+||.++|..|... |++|++.+++. +..+.+.+ .|...++ ....+..++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~------g~~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 76 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK------GLQVVLIDVME-GALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAA 76 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCH-HHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHH
Confidence 48999999999999999999988 98887776543 33333322 1210000 013467788
Q ss_pred hccCCEEEEcccCchH--HHHHHHHHhcCCCCcEE-EEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCc
Q 021218 176 ISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (316)
Q Consensus 176 i~~ADIViLavp~~~~--~~vi~ei~~~mk~gaiL-id~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~ 252 (316)
+++||+||+++|++.. .+++.++.+.++++++| +.++|+.+..+.+ .++...+|+++||+.|... +
T Consensus 77 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~---~~~~~~~~ig~h~~~p~~~-------~- 145 (311)
T PRK06130 77 VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQ---AVTRPERFVGTHFFTPADV-------I- 145 (311)
T ss_pred hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEccCCCCcc-------C-
Confidence 9999999999999863 45888888888888876 4788888777765 4444567999999998865 2
Q ss_pred cccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCC
Q 021218 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 253 e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~ 288 (316)
. -..+++...++++.++.+..+++.+|..-
T Consensus 146 ----~--l~~i~~g~~t~~~~~~~v~~l~~~~G~~~ 175 (311)
T PRK06130 146 ----P--LVEVVRGDKTSPQTVATTMALLRSIGKRP 175 (311)
T ss_pred ----c--eEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 1 24467888899999999999999999543
No 36
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=99.54 E-value=6e-14 Score=135.58 Aligned_cols=164 Identities=16% Similarity=0.213 Sum_probs=115.5
Q ss_pred cccchhhHHhhcCCccc----cccccccCCCCEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEEecCCcccHHHHHH
Q 021218 85 SLADRDEYIVRGGRDLF----NLLPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEARA 159 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F----~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr-~~~~~~g~G~~Vivg~r~~~~s~~~A~~ 159 (316)
++..+++.+ ++|+|.. .+...+|.| +++||||+|.||..+|+.++ .+ |++|++.++... .+....
T Consensus 117 ~i~~~~~~~-~~g~w~~~~~~~~~g~~L~g-ktvGIiG~G~IG~~va~~l~~~f------gm~V~~~~~~~~--~~~~~~ 186 (323)
T PRK15409 117 RVVEVAERV-KAGEWTASIGPDWFGTDVHH-KTLGIVGMGRIGMALAQRAHFGF------NMPILYNARRHH--KEAEER 186 (323)
T ss_pred CHHHHHHHH-HcCCCcccCccccccCCCCC-CEEEEEcccHHHHHHHHHHHhcC------CCEEEEECCCCc--hhhHHh
Confidence 356677775 9999953 122468999 99999999999999999998 78 999876655432 122234
Q ss_pred CCceecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCc
Q 021218 160 AGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNI 230 (316)
Q Consensus 160 ~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i 230 (316)
.|.. ..+++|++++||+|++|+|.+..++ +++ +.++.||||++++.++ |-. +..+++ +.......
T Consensus 187 ~~~~-----~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~-g~i~gAaL 260 (323)
T PRK15409 187 FNAR-----YCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQK-GEIHAAGL 260 (323)
T ss_pred cCcE-----ecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEEe
Confidence 4554 3489999999999999999999987 776 7999999999999664 421 334443 22223457
Q ss_pred cEEEeccCCCchhhHHHHhcCccccCCCceEEEeecc-CCCHHHHH
Q 021218 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (316)
Q Consensus 231 ~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~-d~~~~a~e 275 (316)
+|....|-.+.+. ++.- -|++++||- ..+.++.+
T Consensus 261 DVf~~EP~~~~~p---L~~~--------~nvilTPHia~~t~e~~~ 295 (323)
T PRK15409 261 DVFEQEPLSVDSP---LLSL--------PNVVAVPHIGSATHETRY 295 (323)
T ss_pred ecCCCCCCCCCch---hhcC--------CCEEEcCcCCCCcHHHHH
Confidence 7777887433332 2222 478999985 33444443
No 37
>PRK06932 glycerate dehydrogenase; Provisional
Probab=99.51 E-value=1.1e-13 Score=133.15 Aligned_cols=168 Identities=19% Similarity=0.175 Sum_probs=115.7
Q ss_pred cccchhhHHhhcCCcc----ccc---cccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHH
Q 021218 85 SLADRDEYIVRGGRDL----FNL---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA 157 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~----F~~---~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A 157 (316)
++..+++.+ ++|+|. |+. ...+|.| +++||||+|.||..+|+.++.+ |++|++..+.... .
T Consensus 116 ~~~~~~~~~-~~~~W~~~~~~~~~~~~~~~l~g-ktvgIiG~G~IG~~va~~l~~f------g~~V~~~~~~~~~----~ 183 (314)
T PRK06932 116 SLMGWYRDQ-LSDRWATCKQFCYFDYPITDVRG-STLGVFGKGCLGTEVGRLAQAL------GMKVLYAEHKGAS----V 183 (314)
T ss_pred ChHHHHHHH-HcCCCCcCccccccCCcccccCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCccc----c
Confidence 355667775 899994 221 2468999 9999999999999999999999 9998766543211 0
Q ss_pred HHCCceecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEe-CCch------hhhhhccccCCCC
Q 021218 158 RAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPK 228 (316)
Q Consensus 158 ~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~-aGv~------l~~l~~~~~~~~~ 228 (316)
...+ ..+++|++++||+|++|+|.+..++ +++ +.++.||||++|+.+ .|-. +..+++ +.....
T Consensus 184 ~~~~-------~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~-g~i~gA 255 (314)
T PRK06932 184 CREG-------YTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALEN-GKIAGA 255 (314)
T ss_pred cccc-------cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHc-CCccEE
Confidence 1112 2379999999999999999999987 776 899999999999965 3532 334443 223345
Q ss_pred CccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccC-CCHHHHHHHHH
Q 021218 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVALG 279 (316)
Q Consensus 229 ~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d-~~~~a~e~a~~ 279 (316)
..+|....|..+.+...+.+.+ =-|.+++||-. .+.++.+....
T Consensus 256 aLDV~~~EP~~~~~pl~~~~~~-------~pnvilTPHia~~t~e~~~~~~~ 300 (314)
T PRK06932 256 ALDVLVKEPPEKDNPLIQAAKR-------LPNLLITPHIAWASDSAVTTLVN 300 (314)
T ss_pred EEecCCCCCCCCCChhhHhhcC-------CCCEEECCccccCcHHHHHHHHH
Confidence 6788888885544433221111 13788999863 45555555433
No 38
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.51 E-value=4.3e-13 Score=126.71 Aligned_cols=155 Identities=15% Similarity=0.164 Sum_probs=113.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHH-----------HHHCCceec--------CCCcCC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEE--------NGTLGD 171 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~--------~~t~~~ 171 (316)
|++|+|||.|.||.++|+.+... |++|++.+++.+. .+. ..+.|...+ .-...+
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~------G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 76 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA------GMDVWLLDSDPAA-LSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTT 76 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeC
Confidence 48999999999999999999998 9988877665432 221 222221100 001223
Q ss_pred HHhhhccCCEEEEcccCchH--HHHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHH
Q 021218 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (316)
Q Consensus 172 ~~e~i~~ADIViLavp~~~~--~~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf 248 (316)
..+.+++||+||.|+|.... ..++.++.+.++++++|+ +++++.+..+.+ ......+++++||..|...
T Consensus 77 ~~~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~---~~~~~~r~~g~h~~~pp~~----- 148 (295)
T PLN02545 77 NLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLAS---ATQRPQQVIGMHFMNPPPI----- 148 (295)
T ss_pred CHHHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCcceEEEeccCCccc-----
Confidence 34678999999999995555 447888888999999885 899998877765 3334468999999777665
Q ss_pred hcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 249 ~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
+ ....+++...++++.++.++.+++.+|...+
T Consensus 149 --~-------~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~ 180 (295)
T PLN02545 149 --M-------KLVEIIRGADTSDEVFDATKALAERFGKTVV 180 (295)
T ss_pred --C-------ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeE
Confidence 2 2245788889999999999999999996544
No 39
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.51 E-value=1.5e-13 Score=133.16 Aligned_cols=156 Identities=22% Similarity=0.289 Sum_probs=111.2
Q ss_pred cccchhhHHhhcCCcccc--------ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHH
Q 021218 85 SLADRDEYIVRGGRDLFN--------LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE 156 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F~--------~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~ 156 (316)
++..+++.+ ++|+|.-. ....+|.| ++|||||+|+||.++|+.++.+ |++|+++++.... ..
T Consensus 118 ~~~~~~~~~-~~g~W~~~~~~~~~~~~~g~~L~g-ktvgIiG~G~IG~~vA~~l~~~------G~~V~~~d~~~~~--~~ 187 (333)
T PRK13243 118 RLVEADHFV-RSGEWKRRGVAWHPLMFLGYDVYG-KTIGIIGFGRIGQAVARRAKGF------GMRILYYSRTRKP--EA 187 (333)
T ss_pred CHHHHHHHH-HcCCCCccccccccccccccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCCh--hh
Confidence 355677775 99999521 12368999 9999999999999999999999 9998776654322 22
Q ss_pred HHHCCceecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCC
Q 021218 157 ARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFP 227 (316)
Q Consensus 157 A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~ 227 (316)
....|+. ..+++|++++||+|++|+|.+..++ ++. +.++.||+|++|++++ |-. +..+++ +....
T Consensus 188 ~~~~~~~-----~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~-g~i~g 261 (333)
T PRK13243 188 EKELGAE-----YRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKE-GWIAG 261 (333)
T ss_pred HHHcCCE-----ecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHc-CCeEE
Confidence 3344554 3489999999999999999999876 675 8999999999999764 421 233443 22223
Q ss_pred CCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccC
Q 021218 228 KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (316)
Q Consensus 228 ~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d 268 (316)
...+|...+|. |.+. ++.- -|.++|||-.
T Consensus 262 AaLDV~~~EP~-~~~p---L~~~--------~nvilTPHia 290 (333)
T PRK13243 262 AGLDVFEEEPY-YNEE---LFSL--------KNVVLAPHIG 290 (333)
T ss_pred EEeccCCCCCC-CCch---hhcC--------CCEEECCcCC
Confidence 45677778884 2222 3332 3788999874
No 40
>PRK07574 formate dehydrogenase; Provisional
Probab=99.50 E-value=3.4e-13 Score=133.28 Aligned_cols=167 Identities=17% Similarity=0.103 Sum_probs=117.1
Q ss_pred cccchhhHHhhcCCccc---cccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC
Q 021218 85 SLADRDEYIVRGGRDLF---NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F---~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G 161 (316)
++..+++.+ ++|+|.- .....+|.| |+|||||+|.||..+|+.|+.+ |++|++.++... ..+.....|
T Consensus 165 ~~~~~~~~~-~~g~W~~~~~~~~~~~L~g-ktVGIvG~G~IG~~vA~~l~~f------G~~V~~~dr~~~-~~~~~~~~g 235 (385)
T PRK07574 165 NYEPSHRQA-VEGGWNIADCVSRSYDLEG-MTVGIVGAGRIGLAVLRRLKPF------DVKLHYTDRHRL-PEEVEQELG 235 (385)
T ss_pred CHHHHHHHH-HhCCCCcccccccceecCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCCC-chhhHhhcC
Confidence 355566675 8999953 122478999 9999999999999999999999 999887776532 223333455
Q ss_pred ceecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccE
Q 021218 162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGV 232 (316)
Q Consensus 162 ~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~v 232 (316)
+.. ..+++|++++||+|++|+|.+..++ +++ +.++.||+|++|++++ |-. +..+++ +.......+|
T Consensus 236 ~~~----~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s-G~i~GAaLDV 310 (385)
T PRK07574 236 LTY----HVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALES-GHLAGYAGDV 310 (385)
T ss_pred cee----cCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHh-CCccEEEEec
Confidence 542 3589999999999999999999986 776 7999999999999764 422 233443 2222345677
Q ss_pred EEeccCCCchhhHHHHhcCccccCCCceEEEeecc-CCCHHHHHH
Q 021218 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (316)
Q Consensus 233 I~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~-d~~~~a~e~ 276 (316)
....|..+.+.. ..- -|.++|||- ..+.++.+.
T Consensus 311 ~~~EPlp~d~pL---~~~--------pNvilTPHiag~T~e~~~~ 344 (385)
T PRK07574 311 WFPQPAPADHPW---RTM--------PRNGMTPHISGTTLSAQAR 344 (385)
T ss_pred CCCCCCCCCChH---HhC--------CCeEECCccccCcHHHHHH
Confidence 777775434332 222 368899985 445555543
No 41
>PRK06436 glycerate dehydrogenase; Provisional
Probab=99.50 E-value=2e-13 Score=130.93 Aligned_cols=157 Identities=14% Similarity=0.124 Sum_probs=109.7
Q ss_pred ccchhhHHhhcCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec
Q 021218 86 LADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (316)
+..+++.+ ++|+|... ...+|.| ++|||||+|+||.++|+.++.+ |++|+++++.... .|...
T Consensus 100 i~~~~~~~-~~g~w~~~-~~~~L~g-ktvgIiG~G~IG~~vA~~l~af------G~~V~~~~r~~~~-------~~~~~- 162 (303)
T PRK06436 100 ICENNYNM-KNGNFKQS-PTKLLYN-KSLGILGYGGIGRRVALLAKAF------GMNIYAYTRSYVN-------DGISS- 162 (303)
T ss_pred hHHHHHHH-HcCCCCCC-CCCCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCcc-------cCccc-
Confidence 44566664 99999642 2478999 9999999999999999999999 9998777664221 23221
Q ss_pred CCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEEEec
Q 021218 166 NGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVC 236 (316)
Q Consensus 166 ~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI~vh 236 (316)
...++++++++||+|++|+|.++.++ +++ +.++.||+|++++.++ |-. ...+++ +.......+|....
T Consensus 163 --~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~-g~i~~a~lDV~~~E 239 (303)
T PRK06436 163 --IYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRN-HNDKYYLSDVWWNE 239 (303)
T ss_pred --ccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCceEEEEccCCCC
Confidence 13478999999999999999999887 666 7899999999999764 321 223333 11112345666777
Q ss_pred cCCCchhhHHHHhcCccccCCCceEEEeecc--CCCHHHHHH
Q 021218 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQ--DVDGRATNV 276 (316)
Q Consensus 237 Pn~pg~~~r~lf~~G~e~~G~G~~~iiap~~--d~~~~a~e~ 276 (316)
|..+... --|+++|||- ..+.+..+.
T Consensus 240 P~~~~~~--------------~~nviiTPHi~g~~t~e~~~~ 267 (303)
T PRK06436 240 PIITETN--------------PDNVILSPHVAGGMSGEIMQP 267 (303)
T ss_pred CCCccCC--------------CCCEEECCccccccCHHHHHH
Confidence 7433221 1378999993 356665443
No 42
>PLN03139 formate dehydrogenase; Provisional
Probab=99.50 E-value=3.3e-13 Score=133.42 Aligned_cols=166 Identities=14% Similarity=0.057 Sum_probs=116.7
Q ss_pred cccchhhHHhhcCCcccc---ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC
Q 021218 85 SLADRDEYIVRGGRDLFN---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F~---~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G 161 (316)
++..+++.+ ++|+|.-. ....+|.| ++|||||+|.||..+|+.|+.+ |++|+++++.. ...+...+.|
T Consensus 172 ~~~~~~~~~-~~g~W~~~~~~~~~~~L~g-ktVGIVG~G~IG~~vA~~L~af------G~~V~~~d~~~-~~~~~~~~~g 242 (386)
T PLN03139 172 NFLPGYHQV-VSGEWNVAGIAYRAYDLEG-KTVGTVGAGRIGRLLLQRLKPF------NCNLLYHDRLK-MDPELEKETG 242 (386)
T ss_pred CcHHHHHHH-HhCCCccccccCCCcCCCC-CEEEEEeecHHHHHHHHHHHHC------CCEEEEECCCC-cchhhHhhcC
Confidence 455677775 89999631 12478999 9999999999999999999999 99987766542 2223334456
Q ss_pred ceecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccE
Q 021218 162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGV 232 (316)
Q Consensus 162 ~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~v 232 (316)
+.. ..+++|++++||+|++++|.+..++ +++ +.++.||+|++|++++ |-. +..+++ +.......+|
T Consensus 243 ~~~----~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s-G~l~GAaLDV 317 (386)
T PLN03139 243 AKF----EEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSS-GHIGGYGGDV 317 (386)
T ss_pred cee----cCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHc-CCceEEEEcC
Confidence 542 3489999999999999999999887 776 7999999999999764 422 333443 2222345677
Q ss_pred EEeccCCCchhhHHHHhcCccccCCCceEEEeeccC-CCHHHHH
Q 021218 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATN 275 (316)
Q Consensus 233 I~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d-~~~~a~e 275 (316)
....|..+.+.. ..- -|.++|||-. .+.++.+
T Consensus 318 ~~~EPlp~d~pL---~~~--------pNvilTPHiag~t~~~~~ 350 (386)
T PLN03139 318 WYPQPAPKDHPW---RYM--------PNHAMTPHISGTTIDAQL 350 (386)
T ss_pred CCCCCCCCCChh---hcC--------CCeEEcccccccCHHHHH
Confidence 777785544432 221 2688999863 3444444
No 43
>PRK06487 glycerate dehydrogenase; Provisional
Probab=99.47 E-value=2.9e-13 Score=130.35 Aligned_cols=162 Identities=21% Similarity=0.176 Sum_probs=112.5
Q ss_pred ccchhhHHhhcCCccc----c---ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHH
Q 021218 86 LADRDEYIVRGGRDLF----N---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR 158 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F----~---~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~ 158 (316)
+..+++.+ ++|+|.- + +...+|.| +++||||+|.||..+|+.++.+ |++|+++++....
T Consensus 118 ~~~~~~~~-~~g~W~~~~~~~~~~~~~~~l~g-ktvgIiG~G~IG~~vA~~l~~f------gm~V~~~~~~~~~------ 183 (317)
T PRK06487 118 LPDYQQAV-AAGRWQQSSQFCLLDFPIVELEG-KTLGLLGHGELGGAVARLAEAF------GMRVLIGQLPGRP------ 183 (317)
T ss_pred HHHHHHHH-HcCCCccCcccccccCcccccCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCCc------
Confidence 45566675 9999952 1 12368999 9999999999999999999999 9998766654211
Q ss_pred HCCceecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCC
Q 021218 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKN 229 (316)
Q Consensus 159 ~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~ 229 (316)
.... ..+++|++++||+|++|+|.+..++ +++ +.++.||+|++++.++ |-. +..+++ +......
T Consensus 184 -~~~~-----~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~-g~i~gAa 256 (317)
T PRK06487 184 -ARPD-----RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRS-GHLGGAA 256 (317)
T ss_pred -cccc-----ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEE
Confidence 1111 2379999999999999999999987 776 8999999999999664 422 334443 3333456
Q ss_pred ccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccC-CCHHHHHHH
Q 021218 230 IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (316)
Q Consensus 230 i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d-~~~~a~e~a 277 (316)
++|....|..+.+. ++... . -|.++|||-. .+.+..+.+
T Consensus 257 LDVf~~EP~~~~~p---l~~~~-----~-pnvilTPHia~~t~e~~~~~ 296 (317)
T PRK06487 257 TDVLSVEPPVNGNP---LLAPD-----I-PRLIVTPHSAWGSREARQRI 296 (317)
T ss_pred eecCCCCCCCCCCc---hhhcC-----C-CCEEECCccccCCHHHHHHH
Confidence 77888888543332 22100 0 2688999863 345554443
No 44
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.45 E-value=2.9e-13 Score=106.87 Aligned_cols=89 Identities=22% Similarity=0.268 Sum_probs=71.7
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCC---cEEEEE-ecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccC
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G---~~Vivg-~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~ 188 (316)
||||||.|+||.+++++|.+. | .+|.+. .|+.++..+.+.+.+.... ..+..|+++++|+|+|++||
T Consensus 1 kI~iIG~G~mg~al~~~l~~~------g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~advvilav~p 71 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS------GIKPHEVIIVSSRSPEKAAELAKEYGVQAT---ADDNEEAAQEADVVILAVKP 71 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT------TS-GGEEEEEEESSHHHHHHHHHHCTTEEE---SEEHHHHHHHTSEEEE-S-G
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCceeEEeeccCcHHHHHHHHHhhccccc---cCChHHhhccCCEEEEEECH
Confidence 799999999999999999998 8 788866 5655555566777775431 22789999999999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEe
Q 021218 189 AAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 189 ~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
+...+++.++ +...++++|+++
T Consensus 72 ~~~~~v~~~i-~~~~~~~~vis~ 93 (96)
T PF03807_consen 72 QQLPEVLSEI-PHLLKGKLVISI 93 (96)
T ss_dssp GGHHHHHHHH-HHHHTTSEEEEE
T ss_pred HHHHHHHHHH-hhccCCCEEEEe
Confidence 9999999998 777888988754
No 45
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.44 E-value=4.9e-13 Score=116.42 Aligned_cols=152 Identities=22% Similarity=0.229 Sum_probs=99.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
|++|||||+|+||..+|++|.+. |++|.++++. ++..+...+.|... ..+..|+++++|+|++++|+..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~------g~~v~~~d~~-~~~~~~~~~~g~~~----~~s~~e~~~~~dvvi~~v~~~~ 69 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA------GYEVTVYDRS-PEKAEALAEAGAEV----ADSPAEAAEQADVVILCVPDDD 69 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT------TTEEEEEESS-HHHHHHHHHTTEEE----ESSHHHHHHHBSEEEE-SSSHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhc------CCeEEeeccc-hhhhhhhHHhhhhh----hhhhhhHhhcccceEeecccch
Confidence 79999999999999999999999 9998877765 34455666778764 5789999999999999999977
Q ss_pred HH-HHHHH--HHhcCCCCcEEEEeCCchhhhhhccccCC-CCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeec
Q 021218 191 QA-DNYEK--IFSCMKPNSILGLSHGFLLGHLQSMGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (316)
Q Consensus 191 ~~-~vi~e--i~~~mk~gaiLid~aGv~l~~l~~~~~~~-~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~ 266 (316)
+. +++.+ +++.+++|++++|.+.......++....+ ..++.||-.-=.+ ++ ..-+.| .-. +...
T Consensus 70 ~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~G-g~---~~a~~g-------~l~-~~~g 137 (163)
T PF03446_consen 70 AVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSG-GP---PGAEEG-------TLT-IMVG 137 (163)
T ss_dssp HHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEES-HH---HHHHHT-------TEE-EEEE
T ss_pred hhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeec-cc---cccccc-------ceE-EEcc
Confidence 65 58887 99999999999999876532211100121 2466666422111 11 111223 223 2222
Q ss_pred cCCCHHHHHHHHHHHHHcCCC
Q 021218 267 QDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 267 ~d~~~~a~e~a~~l~~alG~~ 287 (316)
-++++.+.++.+++.+|.+
T Consensus 138 --G~~~~~~~~~~~l~~~~~~ 156 (163)
T PF03446_consen 138 --GDEEAFERVRPLLEAMGKN 156 (163)
T ss_dssp --S-HHHHHHHHHHHHHHEEE
T ss_pred --CCHHHHHHHHHHHHHHhCC
Confidence 3457999999999999953
No 46
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.44 E-value=1.2e-12 Score=126.88 Aligned_cols=157 Identities=13% Similarity=0.184 Sum_probs=106.8
Q ss_pred ccchhhHHhhcCCcccc--ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCce
Q 021218 86 LADRDEYIVRGGRDLFN--LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F~--~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (316)
+..+++.+ ++|+|.+. ....+|.| ++|||||+|+||.++|+.|+.+ |++|+++++...... +..
T Consensus 121 ~~~~~~~~-~~~~~~w~~~~~~~~l~g-~~VgIIG~G~IG~~vA~~L~~~------G~~V~~~d~~~~~~~------~~~ 186 (330)
T PRK12480 121 FPDIERRV-QAHDFTWQAEIMSKPVKN-MTVAIIGTGRIGAATAKIYAGF------GATITAYDAYPNKDL------DFL 186 (330)
T ss_pred HHHHHHHH-HhCCcccccccCccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCChhHhh------hhh
Confidence 45566664 88876542 23478999 9999999999999999999999 999877765532111 111
Q ss_pred ecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEEE
Q 021218 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIA 234 (316)
Q Consensus 164 ~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI~ 234 (316)
. ...++++++++||+|++|+|.+..+. ++. +++++||+|++|+.++ |-. +..+++ +.......+|..
T Consensus 187 ~---~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~-g~i~gaalDV~~ 262 (330)
T PRK12480 187 T---YKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVND-GTLLGAAIDTYE 262 (330)
T ss_pred h---ccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHc-CCeeEEEEeccC
Confidence 1 13478999999999999999999765 665 7899999999999664 532 334443 222234567777
Q ss_pred eccCC----------CchhhHHHHhcCccccCCCceEEEeeccC
Q 021218 235 VCPKG----------MGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (316)
Q Consensus 235 vhPn~----------pg~~~r~lf~~G~e~~G~G~~~iiap~~d 268 (316)
-.|.. ..+....++.. -|.++|||-.
T Consensus 263 ~EP~~~~~~~~~~~~~~~~~~~L~~~--------~nvilTPHia 298 (330)
T PRK12480 263 NEAAYFTNDWTNKDIDDKTLLELIEH--------ERILVTPHIA 298 (330)
T ss_pred CCCccccccccccccCchhhHHHhcC--------CCEEECCccc
Confidence 77731 11211234443 3789999873
No 47
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=99.44 E-value=7.1e-13 Score=127.56 Aligned_cols=155 Identities=15% Similarity=0.139 Sum_probs=106.7
Q ss_pred ccchhhHHhhcCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec
Q 021218 86 LADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (316)
+..|++.. ++|+|+-. ...++.| ++|||||+|+||..+|+.|+.+ |++|++..+..+. . .++..
T Consensus 114 ~~~~~~~~-~~~~w~~~-~~~~l~g-~tvgIvG~G~IG~~vA~~l~af------G~~V~~~~~~~~~-~-----~~~~~- 177 (312)
T PRK15469 114 FDDYQALQ-NSSHWQPL-PEYHRED-FTIGILGAGVLGSKVAQSLQTW------GFPLRCWSRSRKS-W-----PGVQS- 177 (312)
T ss_pred hHHHHHHH-HhCCcCCC-CCCCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCC-C-----CCcee-
Confidence 44556554 88999632 2357899 9999999999999999999999 9998777654321 1 12111
Q ss_pred CCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEEEec
Q 021218 166 NGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVC 236 (316)
Q Consensus 166 ~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI~vh 236 (316)
..+..++++++++||+|++|+|.+..++ +++ +.++.||+|++|+.++ |-. +..+++ +.......+|....
T Consensus 178 ~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~-g~i~gaalDVf~~E 256 (312)
T PRK15469 178 FAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDS-GKVKGAMLDVFSRE 256 (312)
T ss_pred ecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhc-CCeeeEEecCCCCC
Confidence 0113478999999999999999999986 776 7899999999999764 421 334444 22223346667677
Q ss_pred cCCCchhhHHHHhcCccccCCCceEEEeeccC
Q 021218 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (316)
Q Consensus 237 Pn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d 268 (316)
|-.+.+. +... -|+++|||-.
T Consensus 257 Pl~~~~p---l~~~--------~nvi~TPHia 277 (312)
T PRK15469 257 PLPPESP---LWQH--------PRVAITPHVA 277 (312)
T ss_pred CCCCCCh---hhcC--------CCeEECCcCC
Confidence 7432222 2222 3788999864
No 48
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.44 E-value=2.8e-12 Score=116.71 Aligned_cols=158 Identities=17% Similarity=0.132 Sum_probs=109.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-------CCceecCCCcCCHHhhhccCCEEE
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-------~G~~~~~~t~~~~~e~i~~ADIVi 183 (316)
|+|+||| .|+||.++++.|.+. |++|.++.|+.++..+.+.. .|+.. .-...+..++++++|+||
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~------G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~-~~~~~~~~ea~~~aDvVi 73 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA------GNKIIIGSRDLEKAEEAAAKALEELGHGGSDI-KVTGADNAEAAKRADVVI 73 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC------CCEEEEEEcCHHHHHHHHHHHHhhccccCCCc-eEEEeChHHHHhcCCEEE
Confidence 5899997 899999999999998 88888887765443322221 12210 001235678899999999
Q ss_pred EcccCchHHHHHHHHHhcCCCCcEEEE-eCCchh-----------------hhhhccccCCCCCccEEEeccCCCchhhH
Q 021218 184 LLISDAAQADNYEKIFSCMKPNSILGL-SHGFLL-----------------GHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (316)
Q Consensus 184 Lavp~~~~~~vi~ei~~~mk~gaiLid-~aGv~l-----------------~~l~~~~~~~~~~i~vI~vhPn~pg~~~r 245 (316)
+++|++...++++++.+.++ +++|++ +.|+.. +.+++ .+|.+.+||+.+||.+.....
T Consensus 74 lavp~~~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~---~~p~~~~VVka~~~~~a~~~~ 149 (219)
T TIGR01915 74 LAVPWDHVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAA---LLPETSRVVAAFHNLSAVLLQ 149 (219)
T ss_pred EECCHHHHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHH---hCCCCCeEeeccccCCHHHhc
Confidence 99999999999988877765 477775 457654 23444 456557899999999877643
Q ss_pred HHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHc-CCCCe
Q 021218 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL-GSPFT 289 (316)
Q Consensus 246 ~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~al-G~~~~ 289 (316)
. ...+.+...+++ .| ++++.+.+.+|.+.+ |+.-+
T Consensus 150 ~------~~~~~~~~~~v~--Gd-d~~ak~~v~~L~~~~~G~~~v 185 (219)
T TIGR01915 150 D------VDDEVDCDVLVC--GD-DEEAKEVVAELAGRIDGLRAL 185 (219)
T ss_pred C------CCCCCCCCEEEE--CC-CHHHHHHHHHHHHhcCCCCcc
Confidence 2 112234444333 23 356999999999999 98754
No 49
>PLN02928 oxidoreductase family protein
Probab=99.43 E-value=9.6e-13 Score=128.33 Aligned_cols=171 Identities=20% Similarity=0.198 Sum_probs=113.6
Q ss_pred ccchhhHHhhcCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHH--H----
Q 021218 86 LADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--A---- 159 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~--~---- 159 (316)
+..+++.+ ++|+|.-. ...+|.| +++||||+|.||..+|+.++.+ |++|++.++.......... .
T Consensus 137 ~~~~~~~~-~~~~w~~~-~~~~l~g-ktvGIiG~G~IG~~vA~~l~af------G~~V~~~dr~~~~~~~~~~~~~~~~~ 207 (347)
T PLN02928 137 QNEMQISL-KARRLGEP-IGDTLFG-KTVFILGYGAIGIELAKRLRPF------GVKLLATRRSWTSEPEDGLLIPNGDV 207 (347)
T ss_pred HHHHHHHH-HcCCcccc-cccCCCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCChhhhhhhccccccc
Confidence 34456664 88999532 2468999 9999999999999999999999 9998777654221111100 0
Q ss_pred CCceecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCc
Q 021218 160 AGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNI 230 (316)
Q Consensus 160 ~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i 230 (316)
..+........+++|++++||+|++|+|.+..++ +++ +.++.||+|++|+.++ |-. +..+++ +.......
T Consensus 208 ~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~-g~i~gAaL 286 (347)
T PLN02928 208 DDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALES-GHLGGLAI 286 (347)
T ss_pred cccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEEE
Confidence 0000000124589999999999999999999887 776 8999999999999764 422 334443 22223467
Q ss_pred cEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccC-CCHHHHHHH
Q 021218 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (316)
Q Consensus 231 ~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d-~~~~a~e~a 277 (316)
+|....|..+.+. ++.. -|++++||-. .+.++.+.+
T Consensus 287 DV~~~EP~~~~~p---L~~~--------~nviiTPHia~~t~~~~~~~ 323 (347)
T PLN02928 287 DVAWSEPFDPDDP---ILKH--------PNVIITPHVAGVTEYSYRSM 323 (347)
T ss_pred ccCCCCCCCCCCh---hhcC--------CCEEECCcCCCChHHHHHHH
Confidence 7888888544433 2222 3788999864 444544433
No 50
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.43 E-value=9.4e-13 Score=122.99 Aligned_cols=149 Identities=21% Similarity=0.257 Sum_probs=123.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc----EEEEEecCCcccHHH-HHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~----~Vivg~r~~~~s~~~-A~~~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
+++||||.|+|..++++++... |+ +++.... ..++... .+..|+.. +.+..++++.+|++++++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~------Gi~~~~~i~~s~~-~~~~~~~~~~~~g~~~----~~~n~~~~~~s~v~~~sv 69 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVAS------GIIEANRIWASVQ-TERSLGLMFEALGVKT----VFTNLEVLQASDVVFLSV 69 (267)
T ss_pred CceeEechhhhHHHHHhccccc------CCCchhheeeecC-chhhhhhhhhcCCcee----eechHHHHhhccceeEee
Confidence 5789999999999999999988 75 4444444 3444444 77788764 445588999999999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEee
Q 021218 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap 265 (316)
+|+.+.+++.++...+..+++|+ ..+|+++..+++ .++...++||+|||+|... | +|+.+ ++.
T Consensus 70 Kp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~---~l~~~~rviRvmpNtp~~v-------~-----eg~sv-~~~ 133 (267)
T KOG3124|consen 70 KPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLES---KLSPPTRVIRVMPNTPSVV-------G-----EGASV-YAI 133 (267)
T ss_pred cchhHHHHhhcCccccccceEEEEEeecccHHHHHH---hcCCCCceEEecCCChhhh-------h-----cCcEE-Eee
Confidence 99999999999888777888765 889999988887 5666788999999999988 4 78885 899
Q ss_pred ccCCCHHHHHHHHHHHHHcCCC
Q 021218 266 HQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 266 ~~d~~~~a~e~a~~l~~alG~~ 287 (316)
..+++.+..+.+++++..+|.-
T Consensus 134 g~~~~~~D~~l~~~ll~~vG~~ 155 (267)
T KOG3124|consen 134 GCHATNEDLELVEELLSAVGLC 155 (267)
T ss_pred CCCcchhhHHHHHHHHHhcCcc
Confidence 9999999999999999999953
No 51
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.42 E-value=6.7e-12 Score=118.42 Aligned_cols=153 Identities=17% Similarity=0.183 Sum_probs=111.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC------------CceecC---------CCc
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA------------GFTEEN---------GTL 169 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~------------G~~~~~---------~t~ 169 (316)
|++|+|||.|.||.++|..+... |++|++.+++.+ ..+.+.+. ....++ ...
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~------G~~V~l~d~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 75 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH------GFDVTIYDISDE-ALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT 75 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe
Confidence 48999999999999999999988 998887776533 22222211 111000 013
Q ss_pred CCHHhhhccCCEEEEcccCch--HHHHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHH
Q 021218 170 GDIYETISGSDLVLLLISDAA--QADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (316)
Q Consensus 170 ~~~~e~i~~ADIViLavp~~~--~~~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~ 246 (316)
.+.++++++||+||.|+|.+. ..++++++.+.++++++|+ ..++.....+.+ ..+...+|++.||-.|...
T Consensus 76 ~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~---~~~~~~r~vg~Hf~~p~~~--- 149 (287)
T PRK08293 76 TDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAE---ATGRPEKFLALHFANEIWK--- 149 (287)
T ss_pred CCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHh---hcCCcccEEEEcCCCCCCc---
Confidence 577888999999999999774 3458889989999999885 455555555544 2333457999999666543
Q ss_pred HHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 247 lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
...+.+++...++++.++.+.++++.+|..
T Consensus 150 -----------~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~ 179 (287)
T PRK08293 150 -----------NNTAEIMGHPGTDPEVFDTVVAFAKAIGMV 179 (287)
T ss_pred -----------CCeEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 245678899999999999999999999954
No 52
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.41 E-value=1.2e-12 Score=130.18 Aligned_cols=157 Identities=20% Similarity=0.216 Sum_probs=108.3
Q ss_pred ccchhhHHhhcCCcccc-ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCcee
Q 021218 86 LADRDEYIVRGGRDLFN-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F~-~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (316)
+..+++.+ ++|+|.-. ....+|.| +++||||+|.||..+|+.++.+ |++|+++++... ....++..
T Consensus 127 ~~~~~~~~-~~g~w~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------Gm~V~~~d~~~~-----~~~~~~~~ 193 (409)
T PRK11790 127 IPEKNAKA-HRGGWNKSAAGSFEVRG-KTLGIVGYGHIGTQLSVLAESL------GMRVYFYDIEDK-----LPLGNARQ 193 (409)
T ss_pred hHHHHHHH-HcCcccccccCcccCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCcc-----cccCCcee
Confidence 44566664 99999632 22478999 9999999999999999999999 999876665321 11112221
Q ss_pred cCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEEEe
Q 021218 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAV 235 (316)
Q Consensus 165 ~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI~v 235 (316)
..+++|++++||+|++|+|.+..++ +++ +.+..||+|++|+.++ |-. +..+++ +.......+|...
T Consensus 194 ----~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~-g~i~gaalDVf~~ 268 (409)
T PRK11790 194 ----VGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKS-GHLAGAAIDVFPV 268 (409)
T ss_pred ----cCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHc-CCceEEEEcCCCC
Confidence 3489999999999999999999887 776 7899999999999664 422 334443 2222345667777
Q ss_pred ccCCCchhhH-HHHhcCccccCCCceEEEeeccC
Q 021218 236 CPKGMGPSVR-RLYVQGKEINGAGINSSFAVHQD 268 (316)
Q Consensus 236 hPn~pg~~~r-~lf~~G~e~~G~G~~~iiap~~d 268 (316)
.|..+..... .++.. -|++++||-.
T Consensus 269 EP~~~~~~~~~pL~~~--------~nvilTPHia 294 (409)
T PRK11790 269 EPKSNGDPFESPLRGL--------DNVILTPHIG 294 (409)
T ss_pred CCCCccccccchhhcC--------CCEEECCcCC
Confidence 7743321111 13332 3788999863
No 53
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=99.41 E-value=2.5e-12 Score=119.28 Aligned_cols=134 Identities=20% Similarity=0.226 Sum_probs=105.9
Q ss_pred cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchHHHHHHHHHhcCCCCcEEE-EeCCchhhhh
Q 021218 141 IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHL 219 (316)
Q Consensus 141 ~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLi-d~aGv~l~~l 219 (316)
.+|++..|+.++..+.+.+.|+.. ..+..++++++|+||||+||+...++++++.+.++++++|+ .++|+.+..+
T Consensus 10 ~~I~v~~R~~e~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l 85 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKELGIVA----SSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKL 85 (245)
T ss_pred CeEEEEcCCHHHHHHHHHHcCcEE----eCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHHH
Confidence 367777776544444555667653 45788889999999999999999999999988777777655 8899999998
Q ss_pred hccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCeeecChhHH
Q 021218 220 QSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQE 297 (316)
Q Consensus 220 ~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~~~tT~~~e 297 (316)
+. .++.+.+++|+|||+|... | .|++. +++.++.+++..+.++.||..+| ++++.. |++
T Consensus 86 ~~---~~~~~~~ivR~mPn~~~~~-------~-----~g~t~-~~~~~~~~~~~~~~v~~lf~~~G--~~~~v~-E~~ 144 (245)
T TIGR00112 86 SQ---LLGGTRRVVRVMPNTPAKV-------G-----AGVTA-IAANANVSEEDRALVLALFKAVG--EVVELP-EAL 144 (245)
T ss_pred HH---HcCCCCeEEEECCChHHHH-------h-----CCeEE-EecCCCCCHHHHHHHHHHHHhCC--CEEEEC-HHH
Confidence 86 6666678999999998887 4 57777 78888999999999999999999 444444 443
No 54
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.41 E-value=4.9e-12 Score=128.43 Aligned_cols=151 Identities=17% Similarity=0.131 Sum_probs=113.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHH------------------HCC-ceecCCCcCC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR------------------AAG-FTEENGTLGD 171 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~------------------~~G-~~~~~~t~~~ 171 (316)
+++|||||.|+||.++|.++... |++|.+.++..+....... ..| +. ...+
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~------G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~----~~~~ 73 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA------GIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLT----FCAS 73 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceE----eeCC
Confidence 37999999999999999999998 9999888776443211100 012 22 1457
Q ss_pred HHhhhccCCEEEEcccCchHH-H-HHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHH
Q 021218 172 IYETISGSDLVLLLISDAAQA-D-NYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (316)
Q Consensus 172 ~~e~i~~ADIViLavp~~~~~-~-vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf 248 (316)
+.+++++||+|+.++|++... + ++.++.+.++++++|. -++|+....+.+ .+...-.++..||+.|...
T Consensus 74 ~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~---~~~~~~r~~~~hP~nP~~~----- 145 (495)
T PRK07531 74 LAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQE---GMTHPERLFVAHPYNPVYL----- 145 (495)
T ss_pred HHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcceEEEEecCCCccc-----
Confidence 888999999999999999753 3 7778888888887654 456777666665 3444457999999888765
Q ss_pred hcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCC
Q 021218 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 249 ~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~ 288 (316)
+ --..+++.+.++++.++.++.+++.+|..-
T Consensus 146 --~-------~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~ 176 (495)
T PRK07531 146 --L-------PLVELVGGGKTSPETIRRAKEILREIGMKP 176 (495)
T ss_pred --C-------ceEEEcCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 2 234578888899999999999999999553
No 55
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=99.40 E-value=5.6e-12 Score=122.37 Aligned_cols=167 Identities=19% Similarity=0.197 Sum_probs=119.2
Q ss_pred cccchhhHHhhcCCccc-ccc--ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC
Q 021218 85 SLADRDEYIVRGGRDLF-NLL--PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F-~~~--~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G 161 (316)
++...+|.+ ++|+|.. +-+ ..++.| |+|||+|+|.||..+|+.|+.+ |..+.+..|. +...+.+.+.+
T Consensus 135 ~~~~g~~~~-~~g~w~~~~~~~~g~~~~g-K~vgilG~G~IG~~ia~rL~~F------g~~i~y~~r~-~~~~~~~~~~~ 205 (336)
T KOG0069|consen 135 RFSEGNEMV-RNGGWGWAGGWPLGYDLEG-KTVGILGLGRIGKAIAKRLKPF------GCVILYHSRT-QLPPEEAYEYY 205 (336)
T ss_pred hhhhhhhhh-hcCCccccCCccccccccC-CEEEEecCcHHHHHHHHhhhhc------cceeeeeccc-CCchhhHHHhc
Confidence 688888886 9999932 222 689999 9999999999999999999999 9554444443 44455666655
Q ss_pred ceecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEe-CCch------hhhhhccccCCCCCccE
Q 021218 162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGV 232 (316)
Q Consensus 162 ~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~-aGv~------l~~l~~~~~~~~~~i~v 232 (316)
.. ..+++|.+.+||+|++|+|+++.+. +++ +.+.+||+|.+|+.. -|-- ...+.+ +-....+.+|
T Consensus 206 ~~-----~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~s-G~i~~aGlDV 279 (336)
T KOG0069|consen 206 AE-----FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKS-GKIAGAGLDV 279 (336)
T ss_pred cc-----ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhc-CCcccccccc
Confidence 54 3489999999999999999999987 777 899999999999855 3422 223333 3344567888
Q ss_pred EEeccCCCchhhHHHHhcCccccCCCceEEEeecc-CCCHHHHHHHH
Q 021218 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVAL 278 (316)
Q Consensus 233 I~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~-d~~~~a~e~a~ 278 (316)
.--.| .+-+.. +. --|.+++||= .++.+.++...
T Consensus 280 f~~EP-~~~~~l---~~--------~dnvv~~PHigs~t~~t~~~m~ 314 (336)
T KOG0069|consen 280 FEPEP-PVDHPL---LT--------LDNVVILPHIGSATLETREKMA 314 (336)
T ss_pred cCCCC-CCCcch---hc--------ccceeEecccccCcHHHHHHHH
Confidence 88888 433332 22 1357789975 44444444443
No 56
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.39 E-value=2e-12 Score=132.33 Aligned_cols=155 Identities=18% Similarity=0.184 Sum_probs=110.5
Q ss_pred ccchhhHHhhcCCccc-cccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCcee
Q 021218 86 LADRDEYIVRGGRDLF-NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F-~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (316)
+..+++.+ ++|+|.- .+...+|.| |+|||||+|.||.++|+.++.+ |++|+++++... .+.+...|+.
T Consensus 116 ~~~~~~~~-~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~~--~~~~~~~g~~- 184 (526)
T PRK13581 116 IPQAHASL-KAGKWERKKFMGVELYG-KTLGIIGLGRIGSEVAKRAKAF------GMKVIAYDPYIS--PERAAQLGVE- 184 (526)
T ss_pred HHHHHHHH-HcCCCCccCccccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCCC--hhHHHhcCCE-
Confidence 44566675 9999953 122478999 9999999999999999999999 999877765432 3344556765
Q ss_pred cCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEEEe
Q 021218 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAV 235 (316)
Q Consensus 165 ~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI~v 235 (316)
..+++|++++||+|++|+|.+..++ +++ +.++.||+|+++++++ |-. +..+++ +.......+|...
T Consensus 185 ----~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~-g~i~gAaLDVf~~ 259 (526)
T PRK13581 185 ----LVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKS-GKVAGAALDVFEK 259 (526)
T ss_pred ----EEcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhc-CCeeEEEEecCCC
Confidence 2389999999999999999998876 775 8999999999999764 321 233433 2222345667777
Q ss_pred ccCCCchhhHHHHhcCccccCCCceEEEeeccC
Q 021218 236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (316)
Q Consensus 236 hPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d 268 (316)
.|. +.+. |+.- -|.++|||-.
T Consensus 260 EP~-~~~p---L~~~--------~nvilTPHia 280 (526)
T PRK13581 260 EPP-TDSP---LFEL--------PNVVVTPHLG 280 (526)
T ss_pred CCC-CCch---hhcC--------CCeeEcCccc
Confidence 773 2222 3332 3678888763
No 57
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.39 E-value=3.8e-12 Score=121.36 Aligned_cols=146 Identities=25% Similarity=0.258 Sum_probs=106.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
++|+|||+|+||..||++|.+. |+++.+++|+.++..+.+++.|... ..+..|+++++|+||+++|+.++
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a------G~~v~v~~r~~~ka~~~~~~~Ga~~----a~s~~eaa~~aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA------GHEVTVYNRTPEKAAELLAAAGATV----AASPAEAAAEADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC------CCEEEEEeCChhhhhHHHHHcCCcc----cCCHHHHHHhCCEEEEecCCHHH
Confidence 5899999999999999999999 9999999998777677788888874 56788999999999999999998
Q ss_pred HH-HHH---HHHhcCCCCcEEEEeCCchhh-------hhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCce
Q 021218 192 AD-NYE---KIFSCMKPNSILGLSHGFLLG-------HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (316)
Q Consensus 192 ~~-vi~---ei~~~mk~gaiLid~aGv~l~-------~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~ 260 (316)
.+ ++. .+.+.+|||++++|++.+... .++..+..+- |-+|.+.-+ +.. .| .
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~l-DAPVsGg~~---~A~------~G-------t- 132 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFL-DAPVSGGVP---GAA------AG-------T- 132 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEE-ecCccCCch---hhh------hC-------c-
Confidence 76 763 689999999999999876422 2222221111 222222222 111 22 2
Q ss_pred EEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 261 SSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 261 ~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
++.--.-++++.+.++-+++.+|..
T Consensus 133 --LtimvGG~~~~f~r~~pvl~~~g~~ 157 (286)
T COG2084 133 --LTIMVGGDAEAFERAKPVLEAMGKN 157 (286)
T ss_pred --eEEEeCCCHHHHHHHHHHHHHhcCc
Confidence 2332334568999999999999953
No 58
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=99.38 E-value=1.6e-12 Score=133.02 Aligned_cols=137 Identities=18% Similarity=0.197 Sum_probs=100.4
Q ss_pred ccchhhHHhhcCCcccc-ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCcee
Q 021218 86 LADRDEYIVRGGRDLFN-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F~-~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (316)
+..+++.+ ++|+|.-. +...+|.| |+|||||+|.||.++|+.++.+ |++|+++++.. ..+.+.+.|+..
T Consensus 114 ~~~~~~~~-~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~g~~~ 183 (525)
T TIGR01327 114 IPQADASL-KEGEWDRKAFMGTELYG-KTLGVIGLGRIGSIVAKRAKAF------GMKVLAYDPYI--SPERAEQLGVEL 183 (525)
T ss_pred HHHHHHHH-HcCCccccccCccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCCEE
Confidence 45566675 99999522 22478999 9999999999999999999999 99987766542 233455666642
Q ss_pred cCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEEEe
Q 021218 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAV 235 (316)
Q Consensus 165 ~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI~v 235 (316)
..+++|++++||+|++|+|.+..++ +++ +.++.||+|++|++++ |-. +..+++ +.......+|+..
T Consensus 184 ----~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~-g~i~gAaLDVf~~ 258 (525)
T TIGR01327 184 ----VDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEE-GHVRAAALDVFEK 258 (525)
T ss_pred ----cCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHc-CCeeEEEEecCCC
Confidence 3479999999999999999998876 775 7899999999999764 321 233443 2222345666666
Q ss_pred cc
Q 021218 236 CP 237 (316)
Q Consensus 236 hP 237 (316)
.|
T Consensus 259 EP 260 (525)
T TIGR01327 259 EP 260 (525)
T ss_pred CC
Confidence 66
No 59
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.38 E-value=1.6e-11 Score=115.72 Aligned_cols=154 Identities=15% Similarity=0.075 Sum_probs=112.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-----------CCceecC---------CCcC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN---------GTLG 170 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~~---------~t~~ 170 (316)
|++|+|||.|.||.++|..+.+. |++|++.+++.+ ..+.+.+ .|...+. ....
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 73 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVS------GFQTTLVDIKQE-QLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSL 73 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhC------CCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC
Confidence 57999999999999999999998 998887766533 3333221 1111000 0134
Q ss_pred CHHhhhccCCEEEEcccCchHH--HHHHHHHhcCCCCcEE-EEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHH
Q 021218 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (316)
Q Consensus 171 ~~~e~i~~ADIViLavp~~~~~--~vi~ei~~~mk~gaiL-id~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~l 247 (316)
+..+++++||+||.|+|.+... .++.++.+.++++++| ++.+.+....+.+ ......++++.|+-.|.+.
T Consensus 74 ~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~---~~~~~~r~~g~h~~~Pv~~---- 146 (288)
T PRK09260 74 DLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIAS---FTKRPERVIAMHFFNPVHK---- 146 (288)
T ss_pred cHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCccc----
Confidence 6778999999999999998864 3777888899999977 5777777666654 3333346888898644433
Q ss_pred HhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCC
Q 021218 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 248 f~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~ 288 (316)
+--..+++...++++.++.++.+++.+|..-
T Consensus 147 ----------~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~ 177 (288)
T PRK09260 147 ----------MKLVELIRGLETSDETVQVAKEVAEQMGKET 177 (288)
T ss_pred ----------CceEEEeCCCCCCHHHHHHHHHHHHHcCCeE
Confidence 2345578888999999999999999999543
No 60
>PRK06444 prephenate dehydrogenase; Provisional
Probab=99.38 E-value=5e-12 Score=114.62 Aligned_cols=123 Identities=15% Similarity=0.054 Sum_probs=96.8
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
++|+|||. |.||..++..+++. |+.|. +++||+|+||+|+..
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~------g~~v~-------------------------------~~~~DlVilavPv~~ 43 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN------GLGVY-------------------------------IKKADHAFLSVPIDA 43 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC------CCEEE-------------------------------ECCCCEEEEeCCHHH
Confidence 58999997 99999999999999 98763 258999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchh--hHHHHhcCccccCCCceEEEeeccC
Q 021218 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS--VRRLYVQGKEINGAGINSSFAVHQD 268 (316)
Q Consensus 191 ~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~--~r~lf~~G~e~~G~G~~~iiap~~d 268 (316)
..++++++. .+|+|+++++....+. ..+||+.|| +.|++ ..++| .+++++ .++
T Consensus 44 ~~~~i~~~~------~~v~Dv~SvK~~i~~~-------~~~~vg~HP-MfGp~~a~~~lf----------~~~iv~-~~~ 98 (197)
T PRK06444 44 ALNYIESYD------NNFVEISSVKWPFKKY-------SGKIVSIHP-LFGPMSYNDGVH----------RTVIFI-NDI 98 (197)
T ss_pred HHHHHHHhC------CeEEeccccCHHHHHh-------cCCEEecCC-CCCCCcCccccc----------ceEEEE-CCC
Confidence 999998864 3788999998654332 347999999 44533 22223 256565 567
Q ss_pred CCHHHHHHHHHHHHHcCCCCeeecChhHHHh
Q 021218 269 VDGRATNVALGWSVALGSPFTFATTLEQEYR 299 (316)
Q Consensus 269 ~~~~a~e~a~~l~~alG~~~~~~tT~~~e~~ 299 (316)
.++++++.++++|+ | .+++++|+++|=+
T Consensus 99 ~~~~~~~~~~~l~~--G-~~~~~~t~eeHD~ 126 (197)
T PRK06444 99 SRDNYLNEINEMFR--G-YHFVEMTADEHDL 126 (197)
T ss_pred CCHHHHHHHHHHHc--C-CEEEEeCHHHHHH
Confidence 78888999999998 6 6899999999943
No 61
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.37 E-value=1.8e-11 Score=115.60 Aligned_cols=154 Identities=17% Similarity=0.223 Sum_probs=112.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHH--------------HCCceecC---------C
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--------------AAGFTEEN---------G 167 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~--------------~~G~~~~~---------~ 167 (316)
|++|+|||.|.||.++|..+... |++|++.+++.+ ..+.+. +.|...++ .
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~------G~~V~l~d~~~~-~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~ 75 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFART------GYDVTIVDVSEE-ILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIR 75 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhc------CCeEEEEeCCHH-HHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcE
Confidence 47999999999999999999998 998877766533 332221 11211000 0
Q ss_pred CcCCHHhhhccCCEEEEcccCchH--HHHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhh
Q 021218 168 TLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (316)
Q Consensus 168 t~~~~~e~i~~ADIViLavp~~~~--~~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~ 244 (316)
...+. +.+++||+||+++|++.. .++++++.+.++++++|+ .++|+.+..+.. .+....++++.||..|.+.+
T Consensus 76 ~~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~---~~~~~~r~ig~hf~~P~~~~ 151 (291)
T PRK06035 76 TSTSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIAT---ALERKDRFIGMHWFNPAPVM 151 (291)
T ss_pred eeCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCcccC
Confidence 12244 578999999999999874 348888888899999876 567877777765 44445679999999988873
Q ss_pred HHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 245 r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
+ +.- +.+.+.++++..+.+..+++.+|..-+
T Consensus 152 ------~------~vE--v~~g~~T~~e~~~~~~~~~~~lgk~~v 182 (291)
T PRK06035 152 ------K------LIE--VVRAALTSEETFNTTVELSKKIGKIPI 182 (291)
T ss_pred ------c------cEE--EeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 1 222 468889999999999999999996533
No 62
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.32 E-value=2.5e-11 Score=110.84 Aligned_cols=157 Identities=19% Similarity=0.160 Sum_probs=107.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-CCceecCCCcCCHHhhhccCCEEEEcccCc
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLLLISDA 189 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~t~~~~~e~i~~ADIViLavp~~ 189 (316)
||+|+|||.|+||.++|+.+.+. |++|+++.++.+++.+.+.+ .+... +..+++++++.+|+|+|++|-.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a------g~eV~igs~r~~~~~~a~a~~l~~~i---~~~~~~dA~~~aDVVvLAVP~~ 71 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA------GHEVIIGSSRGPKALAAAAAALGPLI---TGGSNEDAAALADVVVLAVPFE 71 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC------CCeEEEecCCChhHHHHHHHhhcccc---ccCChHHHHhcCCEEEEeccHH
Confidence 69999999999999999999999 99999998887766654433 33322 2457899999999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeCC-----ch-------------hhhhhccccCCCCCccEEEeccCCCchhhHHHHhcC
Q 021218 190 AQADNYEKIFSCMKPNSILGLSHG-----FL-------------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (316)
Q Consensus 190 ~~~~vi~ei~~~mk~gaiLid~aG-----v~-------------l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G 251 (316)
.+.+++.++.+.+. |++|+|+.- +. -+.+++ .+|. -++|..-=+.+...+ +++
T Consensus 72 a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~---~lp~-akVVkAFn~i~a~~l----~~~ 142 (211)
T COG2085 72 AIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAK---LLPG-AKVVKAFNTIPAAVL----ADL 142 (211)
T ss_pred HHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHH---HCCC-cchhhhhcccCHHHh----ccC
Confidence 99999999998886 899997631 11 112222 3332 244443333333332 222
Q ss_pred ccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 252 ~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
..-. +...++.. ..|.++.+.+.+|.+.+|+.-+
T Consensus 143 ~~~~--~~~~v~va--gDD~~Ak~~v~~L~~~iG~~~l 176 (211)
T COG2085 143 AKPG--GRRDVLVA--GDDAEAKAVVAELAEDIGFRPL 176 (211)
T ss_pred CCcC--CceeEEEe--cCcHHHHHHHHHHHHhcCccee
Confidence 1111 22222222 3445899999999999998754
No 63
>PRK08605 D-lactate dehydrogenase; Validated
Probab=99.30 E-value=7.8e-12 Score=121.09 Aligned_cols=135 Identities=19% Similarity=0.195 Sum_probs=93.2
Q ss_pred ccchhhHHhhcCCcccc--ccccccCCCCEEEEEcccchHHHHHHHH-HhhhhhhcCCcEEEEEecCCcccHHHHHHCCc
Q 021218 86 LADRDEYIVRGGRDLFN--LLPDAFNGINQIGVIGWGSQGPAQAQNL-RDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F~--~~~~~l~G~kkIGIIG~G~mG~AlA~~L-r~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~ 162 (316)
+..+++.+ ++|.|.+. +...+|.| ++|||||+|+||.++|+.| +.+ |++|++.++..... ...++
T Consensus 121 ~~~~~~~~-~~~~~~~~~~~~~~~l~g-~~VgIIG~G~IG~~vA~~L~~~~------g~~V~~~d~~~~~~----~~~~~ 188 (332)
T PRK08605 121 FNQIQTKV-REHDFRWEPPILSRSIKD-LKVAVIGTGRIGLAVAKIFAKGY------GSDVVAYDPFPNAK----AATYV 188 (332)
T ss_pred hHHHHHHH-HhCCcccccccccceeCC-CEEEEECCCHHHHHHHHHHHhcC------CCEEEEECCCccHh----HHhhc
Confidence 44556664 88877542 12478999 9999999999999999999 566 88877655443221 11222
Q ss_pred eecCCCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEE
Q 021218 163 TEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVI 233 (316)
Q Consensus 163 ~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI 233 (316)
. ...++++++++||+|++|+|.+..++ +++ +.++.||+|++|++++ |.. ...+++ +.......+|.
T Consensus 189 ~----~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~-g~i~gaalDV~ 263 (332)
T PRK08605 189 D----YKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDN-GLIKGAALDTY 263 (332)
T ss_pred c----ccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHh-CCeeEEEEecc
Confidence 2 13478999999999999999999887 444 7899999999999764 432 223333 11222345666
Q ss_pred Eecc
Q 021218 234 AVCP 237 (316)
Q Consensus 234 ~vhP 237 (316)
...|
T Consensus 264 ~~Ep 267 (332)
T PRK08605 264 EFER 267 (332)
T ss_pred cCCC
Confidence 6665
No 64
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.30 E-value=7.2e-11 Score=111.45 Aligned_cols=154 Identities=20% Similarity=0.255 Sum_probs=110.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHH-----------HCCceec---------CCCcC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-----------AAGFTEE---------NGTLG 170 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~-----------~~G~~~~---------~~t~~ 170 (316)
+++|+|||.|.||.++|..+... |++|++.+++.+ ..+.+. +.|.... -....
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~------G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 76 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA------GYDVLLNDVSAD-RLEAGLATINGNLARQVAKGKISEEARAAALARISTAT 76 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeC
Confidence 37999999999999999999998 999888776533 222221 1232100 00123
Q ss_pred CHHhhhccCCEEEEcccCchHH--HHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHH
Q 021218 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (316)
Q Consensus 171 ~~~e~i~~ADIViLavp~~~~~--~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~l 247 (316)
+. +.+++||+||.++|.+... .++.++.+.++++++|+ +++++.+..+.. ......+++++|+--|.+.+
T Consensus 77 ~~-~~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~---~~~~~~r~~g~h~~~p~~~~--- 149 (292)
T PRK07530 77 DL-EDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLAS---ATDRPERFIGIHFMNPVPVM--- 149 (292)
T ss_pred CH-HHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEeeccCCcccC---
Confidence 45 4578999999999987553 47788999999999876 788887766665 22233578899986666642
Q ss_pred HhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 248 f~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
. . .-+.+....+++..+.+..+++.+|..-+
T Consensus 150 --~--------~-vei~~g~~t~~~~~~~~~~~~~~~gk~~v 180 (292)
T PRK07530 150 --K--------L-VELIRGIATDEATFEAAKEFVTKLGKTIT 180 (292)
T ss_pred --c--------e-EEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 1 1 23677788999999999999999996543
No 65
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=99.30 E-value=1.9e-11 Score=118.13 Aligned_cols=173 Identities=20% Similarity=0.175 Sum_probs=126.8
Q ss_pred hhhHHhhcCCccc-cccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCC
Q 021218 89 RDEYIVRGGRDLF-NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG 167 (316)
Q Consensus 89 ~~e~vv~~G~w~F-~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~ 167 (316)
-... ++.|+|.= .+...+|.| |++||||+|.||.-+|+.++.. |++++.+++..+ .++++..|+.
T Consensus 125 A~~s-~k~g~wnr~~~~G~el~G-KTLgvlG~GrIGseVA~r~k~~------gm~vI~~dpi~~--~~~~~a~gvq---- 190 (406)
T KOG0068|consen 125 ASAS-MKEGKWNRVKYLGWELRG-KTLGVLGLGRIGSEVAVRAKAM------GMHVIGYDPITP--MALAEAFGVQ---- 190 (406)
T ss_pred hhee-eecCceeecceeeeEEec-cEEEEeecccchHHHHHHHHhc------CceEEeecCCCc--hHHHHhccce----
Confidence 3334 49999943 334689999 9999999999999999999999 999877766543 5677888887
Q ss_pred CcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-C-ch-----hhhhhccccCCCCCccEEEeccC
Q 021218 168 TLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-G-FL-----LGHLQSMGLDFPKNIGVIAVCPK 238 (316)
Q Consensus 168 t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-G-v~-----l~~l~~~~~~~~~~i~vI~vhPn 238 (316)
..+++|+++.||+|.||||....++ +++ +.+..||+|.-|+.++ | +- +.-+++ +..-..-++|...+|.
T Consensus 191 -~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s-G~vaGaAlDVy~~Epp 268 (406)
T KOG0068|consen 191 -LVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDS-GQVAGAALDVYPEEPP 268 (406)
T ss_pred -eeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhc-CcccceeeecccCCCC
Confidence 5699999999999999999999987 776 7899999999998653 3 31 334443 3333456788888886
Q ss_pred CCchhhHHHHhcCccccCCCceEEEeeccCCC-HH-----HHHHHHHHHHHcCC
Q 021218 239 GMGPSVRRLYVQGKEINGAGINSSFAVHQDVD-GR-----ATNVALGWSVALGS 286 (316)
Q Consensus 239 ~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~-~~-----a~e~a~~l~~alG~ 286 (316)
..+.. ++|-.. -|.+.|||...+ .| +.|+++++...+..
T Consensus 269 ~~~~~-~~Lv~h--------pnVi~TpHlgasT~EAq~~iaievaea~~~~~~~ 313 (406)
T KOG0068|consen 269 KNGWD-SELVSH--------PNVIVTPHLGASTEEAQSRIAIEVAEAVSDYING 313 (406)
T ss_pred ccchh-HHHhcC--------CceeecCccccchHHHHHHHHHHHHHHHHHHhcc
Confidence 55422 333322 367889998654 33 34566676666654
No 66
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.28 E-value=4e-11 Score=113.51 Aligned_cols=153 Identities=18% Similarity=0.155 Sum_probs=100.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec----------CCCcCCHHhhhccCC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE----------NGTLGDIYETISGSD 180 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~----------~~t~~~~~e~i~~AD 180 (316)
||+|+|||.|.||.++|..|.+. |++|.+.++.. +..+...+.+.... .....+.+++++++|
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~------g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 73 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARN------GHDVTLWARDP-EQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADAD 73 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCH-HHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCC
Confidence 68999999999999999999998 99887777653 33333333321000 001346778889999
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEEEeC-Cchh-------hhhhccccCCCC-CccEEEeccCCCchhhHHHHhcC
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH-GFLL-------GHLQSMGLDFPK-NIGVIAVCPKGMGPSVRRLYVQG 251 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLid~a-Gv~l-------~~l~~~~~~~~~-~i~vI~vhPn~pg~~~r~lf~~G 251 (316)
+||+++|+....++++++.+.++++++|+++. |+.. ..+++ .++. ....+...|+.+... . .|
T Consensus 74 ~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~---~~~~~~~~~~~~~P~~~~~~----~-~g 145 (325)
T PRK00094 74 LILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEE---ELPDLAPIAVLSGPSFAKEV----A-RG 145 (325)
T ss_pred EEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHH---HcCCCCceEEEECccHHHHH----H-cC
Confidence 99999999877789999999999999887654 7653 22332 2232 123456667553322 1 12
Q ss_pred ccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCC
Q 021218 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (316)
Q Consensus 252 ~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~ 286 (316)
.....++ . ..+.+..+.+..+++..|.
T Consensus 146 -----~~~~~~~-~--~~~~~~~~~~~~~l~~~~~ 172 (325)
T PRK00094 146 -----LPTAVVI-A--STDEELAERVQELFHSPYF 172 (325)
T ss_pred -----CCcEEEE-E--eCCHHHHHHHHHHhCCCCE
Confidence 2122222 2 2356788888888888885
No 67
>PLN02306 hydroxypyruvate reductase
Probab=99.28 E-value=1.5e-11 Score=121.63 Aligned_cols=170 Identities=19% Similarity=0.221 Sum_probs=110.3
Q ss_pred cccchhhHHhhcCCcc-cc---ccccccCCCCEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEEecCCcccHHH-HH
Q 021218 85 SLADRDEYIVRGGRDL-FN---LLPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAE-AR 158 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~-F~---~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr-~~~~~~g~G~~Vivg~r~~~~s~~~-A~ 158 (316)
++..+++.+ ++|+|. +. ....+|.| ++|||||+|.||..+|+.++ .+ |++|+++++......+. ..
T Consensus 137 ~i~~~~~~~-~~g~w~~~~~~~~~g~~L~g-ktvGIiG~G~IG~~vA~~l~~~f------Gm~V~~~d~~~~~~~~~~~~ 208 (386)
T PLN02306 137 RIVEADEFM-RAGLYEGWLPHLFVGNLLKG-QTVGVIGAGRIGSAYARMMVEGF------KMNLIYYDLYQSTRLEKFVT 208 (386)
T ss_pred ChHHHHHHH-HcCCCccccccccCCcCCCC-CEEEEECCCHHHHHHHHHHHhcC------CCEEEEECCCCchhhhhhhh
Confidence 355666675 889883 21 12368999 99999999999999999985 77 99987666543211111 01
Q ss_pred HCCc-------eecC-CCcCCHHhhhccCCEEEEcccCchHHH-HHH-HHHhcCCCCcEEEEeC-Cch------hhhhhc
Q 021218 159 AAGF-------TEEN-GTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQS 221 (316)
Q Consensus 159 ~~G~-------~~~~-~t~~~~~e~i~~ADIViLavp~~~~~~-vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~ 221 (316)
..|. ...+ ....+++|++++||+|++|+|.+..++ +++ +.++.||+|++|+.++ |-. +..+++
T Consensus 209 ~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 209 AYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred hhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh
Confidence 1221 0000 012489999999999999999999887 776 7999999999999664 422 334443
Q ss_pred cccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccC-CCHHHHH
Q 021218 222 MGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATN 275 (316)
Q Consensus 222 ~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d-~~~~a~e 275 (316)
+.......+|..-.|. +.. .++.. -|.++|||-. .+.+..+
T Consensus 289 -g~i~gAaLDVf~~EP~-~~~---~L~~~--------pNVilTPHiag~T~e~~~ 330 (386)
T PLN02306 289 -NPMFRVGLDVFEDEPY-MKP---GLADM--------KNAVVVPHIASASKWTRE 330 (386)
T ss_pred -CCeeEEEEeCCCCCCC-Ccc---hHhhC--------CCEEECCccccCcHHHHH
Confidence 2222345677777773 222 23332 3788999863 3444443
No 68
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.28 E-value=6.4e-11 Score=112.71 Aligned_cols=151 Identities=15% Similarity=0.079 Sum_probs=105.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
|+|||||+|+||.++|++|.+. |++|.++++.. + .+...+.|... ..+..|++++||+||+++|+.+.
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~------G~~v~v~~~~~-~-~~~~~~~g~~~----~~s~~~~~~~advVi~~v~~~~~ 68 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA------GHQLHVTTIGP-V-ADELLSLGAVS----VETARQVTEASDIIFIMVPDTPQ 68 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC------CCeEEEEeCCH-h-HHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHH
Confidence 4799999999999999999999 99887777653 2 34455667653 45788899999999999999866
Q ss_pred H-HHHH---HHHhcCCCCcEEEEeCCchhhh---hhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEe
Q 021218 192 A-DNYE---KIFSCMKPNSILGLSHGFLLGH---LQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (316)
Q Consensus 192 ~-~vi~---ei~~~mk~gaiLid~aGv~l~~---l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iia 264 (316)
. +++. .+.+.+++|++++|++.+.... +.+ ..-..++.|+. +|-.-+.. ..+.| .-.+++
T Consensus 69 v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~--~~~~~G~~~vd-aPVsGg~~---~a~~g-------~l~~~~ 135 (292)
T PRK15059 69 VEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFAR--QVNELGGDYLD-APVSGGEI---GAREG-------TLSIMV 135 (292)
T ss_pred HHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCCEEE-ecCCCCHH---HHhcC-------cEEEEE
Confidence 4 4663 3677789999999998876332 222 11134677887 58332222 22232 323233
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCCee
Q 021218 265 VHQDVDGRATNVALGWSVALGSPFTF 290 (316)
Q Consensus 265 p~~d~~~~a~e~a~~l~~alG~~~~~ 290 (316)
. -++++.+.++.+++.+|.+.+.
T Consensus 136 -g--G~~~~~~~~~p~l~~~g~~~~~ 158 (292)
T PRK15059 136 -G--GDEAVFERVKPLFELLGKNITL 158 (292)
T ss_pred -c--CCHHHHHHHHHHHHHHcCCcEE
Confidence 2 3568899999999999965433
No 69
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.28 E-value=1.5e-10 Score=110.39 Aligned_cols=153 Identities=12% Similarity=0.098 Sum_probs=106.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CCcC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~t~~ 170 (316)
|++|+|||.|.||.++|..|.+. |++|++.++..+ ..+. ..+.|..... ....
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~v~d~~~~-~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~ 74 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARA------GHEVRLWDADPA-AAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTD 74 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHC------CCeeEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEEC
Confidence 47899999999999999999999 999888876643 2222 2234532100 1245
Q ss_pred CHHhhhccCCEEEEcccCchH--HHHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHH
Q 021218 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (316)
Q Consensus 171 ~~~e~i~~ADIViLavp~~~~--~~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~l 247 (316)
++.+++++||+|+.++|.... ..++.++.+..+++.++. -+.+.....+.. .+...-.++..||-.|...+
T Consensus 75 ~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~---~~~~~~~~~~~hp~~p~~~~--- 148 (308)
T PRK06129 75 SLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTE---HLAGRERCLVAHPINPPYLI--- 148 (308)
T ss_pred cHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHH---hcCCcccEEEEecCCCcccC---
Confidence 788889999999999998754 346777766666655543 233444444554 33445579999996554331
Q ss_pred HhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 248 f~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
--..+++....+++.++.++.+++.+|.+
T Consensus 149 -----------~lveiv~~~~t~~~~~~~~~~~~~~lG~~ 177 (308)
T PRK06129 149 -----------PVVEVVPAPWTAPATLARAEALYRAAGQS 177 (308)
T ss_pred -----------ceEEEeCCCCCCHHHHHHHHHHHHHcCCE
Confidence 12347888899999999999999999954
No 70
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.27 E-value=7.1e-11 Score=112.38 Aligned_cols=147 Identities=16% Similarity=0.139 Sum_probs=103.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHh---hhccCCEEEEcccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE---TISGSDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e---~i~~ADIViLavp~ 188 (316)
|+|||||+|.||.++|++|.+. |++|.+++++. +..+...+.|... ..+.++ .++++|+|++++|+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~------g~~V~~~dr~~-~~~~~l~~~g~~~----~~s~~~~~~~~~~~dvIi~~vp~ 69 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR------GHDCVGYDHDQ-DAVKAMKEDRTTG----VANLRELSQRLSAPRVVWVMVPH 69 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC------CCEEEEEECCH-HHHHHHHHcCCcc----cCCHHHHHhhcCCCCEEEEEcCc
Confidence 5899999999999999999999 99887766654 4455555666553 234444 44678999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEeCCch----hhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEe
Q 021218 189 AAQADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (316)
Q Consensus 189 ~~~~~vi~ei~~~mk~gaiLid~aGv~----l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iia 264 (316)
....++++++.+.+++|++|+|.+... ....+. .-..+++|+.....+.... -+ .|. + +.
T Consensus 70 ~~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~---~~~~g~~~vda~vsGg~~~----a~-------~G~-~-~~ 133 (298)
T TIGR00872 70 GIVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKL---LKEKGIHLLDCGTSGGVWG----RE-------RGY-C-FM 133 (298)
T ss_pred hHHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHH---HHhcCCeEEecCCCCCHHH----Hh-------cCC-e-ee
Confidence 977779999999999999999986543 222211 2234677887555332111 01 232 3 34
Q ss_pred eccCCCHHHHHHHHHHHHHcCCC
Q 021218 265 VHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 265 p~~d~~~~a~e~a~~l~~alG~~ 287 (316)
+.. ++++.+.++.+++.+|.+
T Consensus 134 ~gG--~~~~~~~~~~~l~~~~~~ 154 (298)
T TIGR00872 134 IGG--DGEAFARAEPLFADVAPE 154 (298)
T ss_pred eCC--CHHHHHHHHHHHHHhcCc
Confidence 444 568999999999999973
No 71
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.25 E-value=9.7e-11 Score=111.37 Aligned_cols=147 Identities=16% Similarity=0.140 Sum_probs=100.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhcc---CCEEEEcccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~---ADIViLavp~ 188 (316)
|+|||||+|+||.++|++|.+. |++|.+++++. +..+...+.|... ..+.++++++ +|+|++++|+
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~------g~~v~v~dr~~-~~~~~~~~~g~~~----~~s~~~~~~~~~~advVi~~vp~ 69 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED------GHEVVGYDVNQ-EAVDVAGKLGITA----RHSLEELVSKLEAPRTIWVMVPA 69 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCH-HHHHHHHHCCCee----cCCHHHHHHhCCCCCEEEEEecC
Confidence 4899999999999999999998 99888776654 3445556677653 4578888776 6999999999
Q ss_pred ch-HHHHHHHHHhcCCCCcEEEEeCCchh---hhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEe
Q 021218 189 AA-QADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (316)
Q Consensus 189 ~~-~~~vi~ei~~~mk~gaiLid~aGv~l---~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iia 264 (316)
.. ..++++++.+.+++|++++|++.... ..+.. ..-..++.|+. +|-.-++. .-+ .|. . +.
T Consensus 70 ~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~--~~~~~g~~~vd-apV~G~~~---~a~-------~g~-~-~~ 134 (299)
T PRK12490 70 GEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAE--ELAERGIHYVD-CGTSGGVW---GLR-------NGY-C-LM 134 (299)
T ss_pred chHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHH--HHHHcCCeEEe-CCCCCCHH---HHh-------cCC-e-EE
Confidence 94 45688899999999999999876542 12211 01123566643 34111111 011 233 3 33
Q ss_pred eccCCCHHHHHHHHHHHHHcCC
Q 021218 265 VHQDVDGRATNVALGWSVALGS 286 (316)
Q Consensus 265 p~~d~~~~a~e~a~~l~~alG~ 286 (316)
+.. ++++.+.++.+++.+|.
T Consensus 135 ~gG--~~~~~~~~~~~l~~~~~ 154 (299)
T PRK12490 135 VGG--DKEIYDRLEPVFKALAP 154 (299)
T ss_pred ecC--CHHHHHHHHHHHHHhcC
Confidence 443 45788999999999996
No 72
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.25 E-value=7.8e-11 Score=111.03 Aligned_cols=151 Identities=19% Similarity=0.202 Sum_probs=104.3
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchHH
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA 192 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~ 192 (316)
+|||||+|+||.++|+.|.+. |++|++++++ +...+.+.+.|... ..+..+++++||+|++++|+....
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~------G~~V~~~dr~-~~~~~~~~~~g~~~----~~~~~~~~~~aDivi~~vp~~~~~ 69 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA------GYQLHVTTIG-PEVADELLAAGAVT----AETARQVTEQADVIFTMVPDSPQV 69 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC------CCeEEEEcCC-HHHHHHHHHCCCcc----cCCHHHHHhcCCEEEEecCCHHHH
Confidence 589999999999999999998 9998877665 34455666667653 457889999999999999998766
Q ss_pred H-HH---HHHHhcCCCCcEEEEeCCchhh---hhhccccCC-CCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEe
Q 021218 193 D-NY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (316)
Q Consensus 193 ~-vi---~ei~~~mk~gaiLid~aGv~l~---~l~~~~~~~-~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iia 264 (316)
+ ++ +.+.+.+++++++++.+.+... .+.+ .+ ..++.|+. +|- .+... .... |...++.
T Consensus 70 ~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~---~l~~~g~~~~~-~pv-~g~~~--~a~~-------g~l~i~~ 135 (291)
T TIGR01505 70 EEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAK---AVKEKGIDYLD-APV-SGGEI--GAIE-------GTLSIMV 135 (291)
T ss_pred HHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHH---HHHHcCCCEEe-cCC-CCCHH--HHhc-------CCEEEEe
Confidence 5 54 3477889999999998766532 2222 11 23677776 572 22221 1112 2334333
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCCeeec
Q 021218 265 VHQDVDGRATNVALGWSVALGSPFTFAT 292 (316)
Q Consensus 265 p~~d~~~~a~e~a~~l~~alG~~~~~~t 292 (316)
. . ++++.+.++.+++.+|.+ ++.+
T Consensus 136 g-g--~~~~~~~~~~ll~~lg~~-~~~~ 159 (291)
T TIGR01505 136 G-G--DQAVFDRVKPLFEALGKN-IVLV 159 (291)
T ss_pred c-C--CHHHHHHHHHHHHHhcCC-eEEe
Confidence 3 2 468999999999999954 4433
No 73
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.25 E-value=1.4e-11 Score=104.65 Aligned_cols=113 Identities=27% Similarity=0.316 Sum_probs=73.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-CCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
++|+|||.|++|.++++.|.+. |++|.-...++..+.+.+.+ .+-. ...+.+|+++++|+|+|++||+.
T Consensus 11 l~I~iIGaGrVG~~La~aL~~a------g~~v~~v~srs~~sa~~a~~~~~~~----~~~~~~~~~~~aDlv~iavpDda 80 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARA------GHEVVGVYSRSPASAERAAAFIGAG----AILDLEEILRDADLVFIAVPDDA 80 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHT------TSEEEEESSCHH-HHHHHHC--TT---------TTGGGCC-SEEEE-S-CCH
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCCcccccccccccccc----cccccccccccCCEEEEEechHH
Confidence 7999999999999999999999 98765444443334444433 2222 24577889999999999999999
Q ss_pred HHHHHHHHHhc--CCCCcEEEEeCCch-hhhhhccccCCCCCccEEEecc
Q 021218 191 QADNYEKIFSC--MKPNSILGLSHGFL-LGHLQSMGLDFPKNIGVIAVCP 237 (316)
Q Consensus 191 ~~~vi~ei~~~--mk~gaiLid~aGv~-l~~l~~~~~~~~~~i~vI~vhP 237 (316)
+.++.+++..+ .++|++|+.++|-. .+.++. .-..+..+...||
T Consensus 81 I~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p---~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 81 IAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAP---ARERGAIVASLHP 127 (127)
T ss_dssp HHHHHHHHHCC--S-TT-EEEES-SS--GGGGHH---HHHTT-EEEEEEE
T ss_pred HHHHHHHHHHhccCCCCcEEEECCCCChHHhhhh---HHHCCCeEEEeCc
Confidence 99999999887 89999999998854 444432 1123556666776
No 74
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.22 E-value=1.2e-10 Score=110.74 Aligned_cols=152 Identities=14% Similarity=0.125 Sum_probs=103.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
|++|+|||+|+||.++|++|.+. |++|.+++++. ...+...+.|... ..+..+++++||+||+++|++.
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~------G~~V~v~d~~~-~~~~~~~~~g~~~----~~s~~~~~~~aDvVi~~vp~~~ 69 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQ------GHQLQVFDVNP-QAVDALVDKGATP----AASPAQAAAGAEFVITMLPNGD 69 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCH-HHHHHHHHcCCcc----cCCHHHHHhcCCEEEEecCCHH
Confidence 57999999999999999999998 99887777654 3445555566542 4578889999999999999997
Q ss_pred HH-HHHH---HHHhcCCCCcEEEEeCCchhh---hhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEE
Q 021218 191 QA-DNYE---KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (316)
Q Consensus 191 ~~-~vi~---ei~~~mk~gaiLid~aGv~l~---~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~ii 263 (316)
.. .++. .+.+.+++|++++|.+.+... .+.. .....++.|+ -.|-.-++. .-+. |...++
T Consensus 70 ~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~--~l~~~g~~~l-dapV~g~~~---~a~~-------g~l~~~ 136 (296)
T PRK15461 70 LVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIA--DMQAKGFSMM-DVPVGRTSD---NAIT-------GTLLLL 136 (296)
T ss_pred HHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCcEE-EccCCCCHH---HHHh-------CcEEEE
Confidence 54 4653 477889999999988765432 2221 0112356665 355222221 1112 233323
Q ss_pred eeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 264 AVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 264 ap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
.. -+++..+.++.+++.+|.+.+
T Consensus 137 -~g--g~~~~~~~~~p~l~~~g~~~~ 159 (296)
T PRK15461 137 -AG--GTAEQVERATPILMAMGNELI 159 (296)
T ss_pred -EC--CCHHHHHHHHHHHHHHcCCeE
Confidence 32 356889999999999996433
No 75
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.22 E-value=3.7e-10 Score=109.34 Aligned_cols=154 Identities=16% Similarity=0.119 Sum_probs=112.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHH-----------HHCCceecC-----CCcCCHHh
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN-----GTLGDIYE 174 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~~-----~t~~~~~e 174 (316)
+++|+|||.|.||.++|..+... |++|.+.++..+ ..+.+ .+.|..... ....++++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a------G~~V~l~D~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~ 79 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH------GLDVVAWDPAPG-AEAALRANVANAWPALERQGLAPGASPARLRFVATIEA 79 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHH
Confidence 48999999999999999999999 999988876533 11111 112211000 12457889
Q ss_pred hhccCCEEEEcccCchHHH--HHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcC
Q 021218 175 TISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (316)
Q Consensus 175 ~i~~ADIViLavp~~~~~~--vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G 251 (316)
++++||+|+-++|.+...+ ++.++.+.++++++|. -++++....+.. .+...-+++..||--|.+.+ .
T Consensus 80 av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~---~~~~p~R~~g~HffnP~~~~-----p- 150 (321)
T PRK07066 80 CVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYA---RATHPERCVVGHPFNPVYLL-----P- 150 (321)
T ss_pred HhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHH---hcCCcccEEEEecCCccccC-----c-
Confidence 9999999999999888754 7889999999999765 456766665654 33334579999996666653 0
Q ss_pred ccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCC
Q 021218 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 252 ~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~ 288 (316)
-.=|+++..++++.++.+.+++..+|..-
T Consensus 151 --------LVEVv~g~~T~~e~~~~~~~f~~~lGk~p 179 (321)
T PRK07066 151 --------LVEVLGGERTAPEAVDAAMGIYRALGMRP 179 (321)
T ss_pred --------eEEEeCCCCCCHHHHHHHHHHHHHcCCEe
Confidence 12268899999999999999999999543
No 76
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.19 E-value=3.6e-10 Score=106.55 Aligned_cols=150 Identities=17% Similarity=0.219 Sum_probs=101.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
++|||||+|.||.++|+.+.+. |++|.+++++ ....+...+.|... ..+.+++++++|+||+++|+...
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~------g~~v~~~d~~-~~~~~~~~~~g~~~----~~~~~e~~~~~d~vi~~vp~~~~ 71 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKA------GYSLVVYDRN-PEAVAEVIAAGAET----ASTAKAVAEQCDVIITMLPNSPH 71 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHC------CCeEEEEcCC-HHHHHHHHHCCCee----cCCHHHHHhcCCEEEEeCCCHHH
Confidence 7899999999999999999998 9888766554 34445556667653 45788899999999999998876
Q ss_pred HH-HH---HHHHhcCCCCcEEEEeCCchhh---hhhccccCC-CCCccEEEeccCCCchhhHHHHhcCccccCCCceEEE
Q 021218 192 AD-NY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (316)
Q Consensus 192 ~~-vi---~ei~~~mk~gaiLid~aGv~l~---~l~~~~~~~-~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~ii 263 (316)
.+ ++ +++.+.+++|++++|++.+... .+.+ .+ ..++.|+-. |-.-+.. .-. .|...++
T Consensus 72 ~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~---~~~~~g~~~~d~-pv~g~~~---~a~-------~g~l~i~ 137 (296)
T PRK11559 72 VKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAA---ALKAKGIEMLDA-PVSGGEP---KAI-------DGTLSVM 137 (296)
T ss_pred HHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHH---HHHHcCCcEEEc-CCCCCHH---HHh-------hCcEEEE
Confidence 55 55 3578889999999998877633 2222 11 124555433 4211111 001 1233323
Q ss_pred eeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 264 AVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 264 ap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
. .. ++++.+.+..+++.+|.+-+
T Consensus 138 ~-gg--~~~~~~~~~~~l~~~~~~~~ 160 (296)
T PRK11559 138 V-GG--DKAIFDKYYDLMKAMAGSVV 160 (296)
T ss_pred E-CC--CHHHHHHHHHHHHHhcCCeE
Confidence 3 32 46889999999999996543
No 77
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.14 E-value=1.1e-10 Score=122.57 Aligned_cols=115 Identities=14% Similarity=-0.034 Sum_probs=91.9
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCC-ccEEEeccCCCchhhHHHHhcCccccCCCce
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKN-IGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~-i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~ 260 (316)
||||+|+....++++++.++++++++|+|++++|...++.....++.+ .+||+.|| +.|++ ...|+..+...++|.+
T Consensus 1 vila~Pv~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HP-MaG~e-~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHP-IAGRE-SSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcCHHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCC-cCcCc-chhhhhhChhHhCCCe
Confidence 689999999999999999999999999999999854443322244432 57999999 55555 2333334444446799
Q ss_pred EEEeeccCCCHHHHHHHHHHHHHcCCCCeeecChhHHHh
Q 021218 261 SSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYR 299 (316)
Q Consensus 261 ~iiap~~d~~~~a~e~a~~l~~alG~~~~~~tT~~~e~~ 299 (316)
+++||.++.+.++++.++++|..+| .+++.+|+++|=+
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~G-a~~~~~~~~~HD~ 116 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAAR-ADVRAMSAEQHDR 116 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcC-CEEEECCHHHHHH
Confidence 9999999999999999999999999 7799999999944
No 78
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.14 E-value=5e-10 Score=105.77 Aligned_cols=149 Identities=19% Similarity=0.118 Sum_probs=102.3
Q ss_pred EEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH-HHH
Q 021218 116 VIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ-ADN 194 (316)
Q Consensus 116 IIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~-~~v 194 (316)
|||+|+||.++|++|.+. |++|.+++++. +..+...+.|... ..+..++++++|+||+++|+..+ .++
T Consensus 1 ~IGlG~mG~~mA~~L~~~------G~~V~v~dr~~-~~~~~l~~~g~~~----~~s~~~~~~~advVil~vp~~~~~~~v 69 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA------GHPVRVFDLFP-DAVEEAVAAGAQA----AASPAEAAEGADRVITMLPAGQHVISV 69 (288)
T ss_pred CCcccHhHHHHHHHHHhC------CCeEEEEeCCH-HHHHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHHHHHH
Confidence 699999999999999999 99888777654 3455566667653 45788999999999999999665 557
Q ss_pred H---HHHHhcCCCCcEEEEeCCchhhhhhccccCC-CCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeeccCCC
Q 021218 195 Y---EKIFSCMKPNSILGLSHGFLLGHLQSMGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (316)
Q Consensus 195 i---~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~-~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~ 270 (316)
+ +.+.+.+++|++++|.+++.....+.....+ ..++.|+-. |-. |.. ...+.| ...+++ .. +
T Consensus 70 ~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vda-Pv~-Gg~--~~a~~g-------~l~~~~-gg--~ 135 (288)
T TIGR01692 70 YSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDA-PVS-GGV--GGARAG-------TLTFMV-GG--V 135 (288)
T ss_pred HcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEC-CCC-CCH--HHHhhC-------cEEEEE-CC--C
Confidence 7 5788899999999999887643222110121 246777764 622 221 122333 333223 22 3
Q ss_pred HHHHHHHHHHHHHcCCCCe
Q 021218 271 GRATNVALGWSVALGSPFT 289 (316)
Q Consensus 271 ~~a~e~a~~l~~alG~~~~ 289 (316)
++..+.++.+++.+|.+.+
T Consensus 136 ~~~~~~~~~~l~~~g~~~~ 154 (288)
T TIGR01692 136 AEEFAAAEPVLGPMGRNIV 154 (288)
T ss_pred HHHHHHHHHHHHHhcCCeE
Confidence 5788899999999996433
No 79
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.13 E-value=9.9e-10 Score=104.49 Aligned_cols=147 Identities=18% Similarity=0.130 Sum_probs=103.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhcc---CCEEEEcccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~---ADIViLavp~ 188 (316)
|+|||||+|+||.++|++|.+. |++|.+++++. +..+...+.|... ..+.+|+++. +|+|++++|+
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~------g~~v~v~dr~~-~~~~~~~~~g~~~----~~~~~e~~~~~~~~dvvi~~v~~ 69 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG------GHEVVGYDRNP-EAVEALAEEGATG----ADSLEELVAKLPAPRVVWLMVPA 69 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC------CCeEEEEECCH-HHHHHHHHCCCee----cCCHHHHHhhcCCCCEEEEEecC
Confidence 5899999999999999999998 99888776654 3444556677763 4577788775 6999999999
Q ss_pred chH-HHHHHHHHhcCCCCcEEEEeCCchh---hhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEe
Q 021218 189 AAQ-ADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (316)
Q Consensus 189 ~~~-~~vi~ei~~~mk~gaiLid~aGv~l---~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iia 264 (316)
... .++++.+.+.+++|++++|.+.... ..+.. ..-..++.|+- +|..=++.- =+ .|. . +-
T Consensus 70 ~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~--~~~~~g~~~~d-apvsG~~~~---a~-------~g~-~-~~ 134 (301)
T PRK09599 70 GEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAE--LLAEKGIHFVD-VGTSGGVWG---LE-------RGY-C-LM 134 (301)
T ss_pred CcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHH--HHHHcCCEEEe-CCCCcCHHH---Hh-------cCC-e-EE
Confidence 854 5688889999999999998865432 11211 11134678885 774322220 11 233 3 33
Q ss_pred eccCCCHHHHHHHHHHHHHcCC
Q 021218 265 VHQDVDGRATNVALGWSVALGS 286 (316)
Q Consensus 265 p~~d~~~~a~e~a~~l~~alG~ 286 (316)
+. -++++.+.++.+++.+|.
T Consensus 135 ~g--G~~~~~~~~~~~l~~~~~ 154 (301)
T PRK09599 135 IG--GDKEAVERLEPIFKALAP 154 (301)
T ss_pred ec--CCHHHHHHHHHHHHHHcc
Confidence 33 356889999999999997
No 80
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.13 E-value=1.4e-09 Score=106.20 Aligned_cols=149 Identities=9% Similarity=0.084 Sum_probs=99.3
Q ss_pred HHHHHHHHHhhhhhhcCCcEEEEEecCCcc----cHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch-HHHHHHH
Q 021218 123 GPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEK 197 (316)
Q Consensus 123 G~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~----s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~-~~~vi~e 197 (316)
|.++|++|.+. |++|++++++.+. ..+...+.|+.. ..+..+++++||+||+++|+.. ..+++++
T Consensus 32 G~~MA~~La~a------G~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~----asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~ 101 (342)
T PRK12557 32 GSRMAIEFAEA------GHDVVLAEPNRSILSEELWKKVEDAGVKV----VSDDAEAAKHGEIHILFTPFGKKTVEIAKN 101 (342)
T ss_pred HHHHHHHHHhC------CCeEEEEECCHHHhhHHHHHHHHHCCCEE----eCCHHHHHhCCCEEEEECCCcHHHHHHHHH
Confidence 88999999998 9998888775431 334556677653 4577888999999999999998 5568889
Q ss_pred HHhcCCCCcEEEEeCCchhhh----hhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEE-----eeccC
Q 021218 198 IFSCMKPNSILGLSHGFLLGH----LQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF-----AVHQD 268 (316)
Q Consensus 198 i~~~mk~gaiLid~aGv~l~~----l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~ii-----ap~~d 268 (316)
+.++++++++|+|++.+.... ++. .++...+.+++||+.|+... |.+.. .-+++ ++...
T Consensus 102 L~~~L~~g~IVId~ST~~~~~~s~~l~~---~l~~~~~~~gi~~~~p~~v~------Gae~g---~l~Vm~gg~t~~~~~ 169 (342)
T PRK12557 102 ILPHLPENAVICNTCTVSPVVLYYSLEG---ELRTKRKDVGISSMHPAAVP------GTPQH---GHYVIAGKTTNGTEL 169 (342)
T ss_pred HHhhCCCCCEEEEecCCCHHHHHHHHHH---HhcccccccCeeecCCcccc------ccccc---hheEEeCCCcccccC
Confidence 999999999999988765332 222 22222223344443333321 11111 11223 34456
Q ss_pred CCHHHHHHHHHHHHHcCCCCeeecCh
Q 021218 269 VDGRATNVALGWSVALGSPFTFATTL 294 (316)
Q Consensus 269 ~~~~a~e~a~~l~~alG~~~~~~tT~ 294 (316)
.+++..+.++.+++++| .+++..+.
T Consensus 170 ~~~e~~e~v~~LL~a~G-~~v~~~~~ 194 (342)
T PRK12557 170 ATEEQIEKCVELAESIG-KEPYVVPA 194 (342)
T ss_pred CCHHHHHHHHHHHHHcC-CEEEEeCH
Confidence 68899999999999999 44565554
No 81
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.13 E-value=9.2e-10 Score=106.49 Aligned_cols=146 Identities=14% Similarity=0.129 Sum_probs=106.5
Q ss_pred HHHHHHHHHhhhhhhcCCcEEEEEecCCcc----cHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchHH-HHHHH
Q 021218 123 GPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA-DNYEK 197 (316)
Q Consensus 123 G~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~----s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~-~vi~e 197 (316)
|.+||++|.+. |++|++++++.+. ..+...+.|... ..+..++++++|+||+++|+.++. ++++.
T Consensus 32 GspMArnLlkA------GheV~V~Drnrsa~e~e~~e~LaeaGA~~----AaS~aEAAa~ADVVIL~LPd~aaV~eVl~G 101 (341)
T TIGR01724 32 GSRMAIEFAMA------GHDVVLAEPNREFMSDDLWKKVEDAGVKV----VSDDKEAAKHGEIHVLFTPFGKGTFSIART 101 (341)
T ss_pred HHHHHHHHHHC------CCEEEEEeCChhhhhhhhhHHHHHCCCee----cCCHHHHHhCCCEEEEecCCHHHHHHHHHH
Confidence 78999999999 9999888775432 224566778764 457889999999999999999876 58888
Q ss_pred HHhcCCCCcEEEEeCCchhh----hhhccccC-CCCCccEEEeccC-CCchhhHHHHhcCccccCCCceEEEeeccCCCH
Q 021218 198 IFSCMKPNSILGLSHGFLLG----HLQSMGLD-FPKNIGVIAVCPK-GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (316)
Q Consensus 198 i~~~mk~gaiLid~aGv~l~----~l~~~~~~-~~~~i~vI~vhPn-~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~ 271 (316)
+++++++|++|+|++.+... .++. .+. -++|+.+...||- -|++.-.+.|.-+ |.. +.-....++
T Consensus 102 Laa~L~~GaIVID~STIsP~t~~~~~e~-~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~------~~~--~~~~~~A~e 172 (341)
T TIGR01724 102 IIEHVPENAVICNTCTVSPVVLYYSLEK-ILRLKRTDVGISSMHPAAVPGTPQHGHYVIG------GKP--TAGKEMATE 172 (341)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHH-HhhcCccccCeeccCCCCCCCCCCCceeeec------ccc--ccccccCCH
Confidence 99999999999999876522 2222 112 2578999999993 3444422233332 222 344567899
Q ss_pred HHHHHHHHHHHHcCCC
Q 021218 272 RATNVALGWSVALGSP 287 (316)
Q Consensus 272 ~a~e~a~~l~~alG~~ 287 (316)
+.++...+|.++.|..
T Consensus 173 e~i~~~~el~~~~~~~ 188 (341)
T TIGR01724 173 EQISKCVELAKSTGKK 188 (341)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999999953
No 82
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.13 E-value=1.2e-09 Score=111.48 Aligned_cols=155 Identities=15% Similarity=0.152 Sum_probs=114.1
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CCc
Q 021218 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTL 169 (316)
Q Consensus 110 G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~t~ 169 (316)
.+++|||||.|.||..+|+.+... |++|++.+++.+ ..+. ..+.|...+. ...
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~a------G~~V~l~D~~~e-~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~ 78 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQA------GHTVLLYDARAG-AAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV 78 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe
Confidence 358999999999999999999998 999988876643 2322 2444521000 013
Q ss_pred CCHHhhhccCCEEEEcccCchHHH--HHHHHHhcCCCCcEE-EEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHH
Q 021218 170 GDIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (316)
Q Consensus 170 ~~~~e~i~~ADIViLavp~~~~~~--vi~ei~~~mk~gaiL-id~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~ 246 (316)
.+.++ +++||+||-++|.+...+ ++.++...++++++| ++.+.+.+..+.. .....-++++.|.--|.+.+
T Consensus 79 ~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~---~~~~p~r~~G~hff~Pa~v~-- 152 (507)
T PRK08268 79 EALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAA---ALKHPERVAGLHFFNPVPLM-- 152 (507)
T ss_pred CCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEeecCCcccC--
Confidence 45654 679999999999998865 667887888999998 4888888776665 22223468899987777764
Q ss_pred HHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 247 lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
--..+++...++++.++.+..+++.+|..-+
T Consensus 153 ------------~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv 183 (507)
T PRK08268 153 ------------KLVEVVSGLATDPAVADALYALARAWGKTPV 183 (507)
T ss_pred ------------eeEEEeCCCCCCHHHHHHHHHHHHHcCCceE
Confidence 1344777889999999999999999996533
No 83
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=99.12 E-value=1.4e-10 Score=114.57 Aligned_cols=151 Identities=17% Similarity=0.201 Sum_probs=101.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
.+|.| ++|||||+|+||+.+|+.++.+ |++|+++++.... ..... ...++++++++||+|++|
T Consensus 112 ~~L~g-ktvGIIG~G~IG~~vA~~l~a~------G~~V~~~dp~~~~-----~~~~~-----~~~~L~ell~~sDiI~lh 174 (378)
T PRK15438 112 FSLHD-RTVGIVGVGNVGRRLQARLEAL------GIKTLLCDPPRAD-----RGDEG-----DFRSLDELVQEADILTFH 174 (378)
T ss_pred CCcCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCcccc-----ccccc-----ccCCHHHHHhhCCEEEEe
Confidence 57899 9999999999999999999999 9998776542111 11111 145899999999999999
Q ss_pred ccCchH----H-HHHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCc
Q 021218 186 ISDAAQ----A-DNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (316)
Q Consensus 186 vp~~~~----~-~vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~ 252 (316)
+|.+.. + .+++ +.++.||+|++|+.++ |-. +..+++ +.......+|....|. +... ++..
T Consensus 175 ~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~-g~~~ga~LDV~e~EP~-~~~~---Ll~~-- 247 (378)
T PRK15438 175 TPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNE-GQKLSVVLDVWEGEPE-LNVE---LLKK-- 247 (378)
T ss_pred CCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHh-CCCcEEEEecCCCCCC-Cchh---hhhc--
Confidence 999884 4 4776 7899999999999764 421 334443 2222335667777884 2222 2221
Q ss_pred cccCCCceEEEeeccC-CCHHHHH-----HHHHHHHHcCCC
Q 021218 253 EINGAGINSSFAVHQD-VDGRATN-----VALGWSVALGSP 287 (316)
Q Consensus 253 e~~G~G~~~iiap~~d-~~~~a~e-----~a~~l~~alG~~ 287 (316)
.+ ++|||-- .+.+... .++.+-..+|..
T Consensus 248 ------~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~~~~ 281 (378)
T PRK15438 248 ------VD-IGTPHIAGYTLEGKARGTTQVFEAYSKFIGHE 281 (378)
T ss_pred ------CC-EECCccCcCcHHHHHHHHHHHHHHHHHHHcCc
Confidence 23 7899853 3444433 345566666643
No 84
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.12 E-value=4.4e-10 Score=114.47 Aligned_cols=153 Identities=14% Similarity=0.073 Sum_probs=104.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH---CCceecCCCcCCHHhhhcc---CCEEEE
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISG---SDLVLL 184 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~---~G~~~~~~t~~~~~e~i~~---ADIViL 184 (316)
+++|||||+|.||.+||++|.+. |++|.+++|..++..+...+ .|... -....+++|+++. +|+||+
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~------G~~V~V~NRt~~k~~~l~~~~~~~Ga~~-~~~a~s~~e~v~~l~~~dvIi~ 78 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEK------GFPISVYNRTTSKVDETVERAKKEGNLP-LYGFKDPEDFVLSIQKPRSVII 78 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhhhcCCcc-cccCCCHHHHHhcCCCCCEEEE
Confidence 47899999999999999999999 99999998876544433321 14210 0014578888875 999999
Q ss_pred cccCchHHH-HHHHHHhcCCCCcEEEEeCCchhh---hhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCce
Q 021218 185 LISDAAQAD-NYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (316)
Q Consensus 185 avp~~~~~~-vi~ei~~~mk~gaiLid~aGv~l~---~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~ 260 (316)
++|+....+ +++.+++.+++|++|+|.+-.... .+.. ..-..++.|+. +|-.=++. .=+ .|-
T Consensus 79 ~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~--~l~~~Gi~fld-apVSGG~~---gA~-------~G~- 144 (493)
T PLN02350 79 LVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIK--EAAEKGLLYLG-MGVSGGEE---GAR-------NGP- 144 (493)
T ss_pred ECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEEe-CCCcCCHH---Hhc-------CCC-
Confidence 999998876 888999999999999998765321 1111 11134666654 44111111 001 233
Q ss_pred EEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 261 SSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 261 ~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
. |.+.. ++++.+.++.+++.+|.+
T Consensus 145 ~-im~GG--~~~a~~~v~pvL~~ia~k 168 (493)
T PLN02350 145 S-LMPGG--SFEAYKNIEDILEKVAAQ 168 (493)
T ss_pred e-EEecC--CHHHHHHHHHHHHHHhhh
Confidence 3 56654 457999999999999964
No 85
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.10 E-value=9.9e-10 Score=111.36 Aligned_cols=151 Identities=15% Similarity=0.098 Sum_probs=102.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH---CCceecCCCcCCHHhhhc---cCCEEEE
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETIS---GSDLVLL 184 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~---~G~~~~~~t~~~~~e~i~---~ADIViL 184 (316)
|.+|||||+|+||.++|++|.+. |++|.+++|+.++..+.... .|... ....+++|+++ ++|+|++
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~------G~~V~v~dr~~~~~~~l~~~~~~~g~~i--~~~~s~~e~v~~l~~~d~Iil 72 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASR------GFKISVYNRTYEKTEEFVKKAKEGNTRV--KGYHTLEELVNSLKKPRKVIL 72 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhhhhcCCcc--eecCCHHHHHhcCCCCCEEEE
Confidence 57899999999999999999999 99988888765443322221 24321 12457888886 5899999
Q ss_pred cccCchHHH-HHHHHHhcCCCCcEEEEeCCch----hhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCc
Q 021218 185 LISDAAQAD-NYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (316)
Q Consensus 185 avp~~~~~~-vi~ei~~~mk~gaiLid~aGv~----l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~ 259 (316)
++|+....+ +++++.+++++|++|+|.+... ....+. ...+++.|+. +|-.=+.. .-+. |-
T Consensus 73 ~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~---l~~~Gi~fld-apVSGG~~---gA~~-------G~ 138 (470)
T PTZ00142 73 LIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKR---CEEKGILYLG-MGVSGGEE---GARY-------GP 138 (470)
T ss_pred EeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHH---HHHcCCeEEc-CCCCCCHH---HHhc-------CC
Confidence 988887665 8899999999999999987532 111111 2234666664 34111111 1112 33
Q ss_pred eEEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 260 ~~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
+ +.+.. ++++.+.++.+++.++.+
T Consensus 139 -~-lm~GG--~~~a~~~~~piL~~ia~~ 162 (470)
T PTZ00142 139 -S-LMPGG--NKEAYDHVKDILEKCSAK 162 (470)
T ss_pred -E-EEEeC--CHHHHHHHHHHHHHHhhh
Confidence 3 56655 458999999999999975
No 86
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.08 E-value=3.8e-09 Score=100.35 Aligned_cols=153 Identities=15% Similarity=0.162 Sum_probs=110.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CCcC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~t~~ 170 (316)
|++|||||.|.||..+|..+... |++|++.++..+. .+. ..+.|...+. ....
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~ 77 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARA------GVDVLVFETTEEL-ATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTT 77 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHHH-HHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeC
Confidence 47999999999999999999998 9998888776432 222 3334422100 0134
Q ss_pred CHHhhhccCCEEEEcccCchHHH--HHHHHHhcC-CCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHH
Q 021218 171 DIYETISGSDLVLLLISDAAQAD--NYEKIFSCM-KPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (316)
Q Consensus 171 ~~~e~i~~ADIViLavp~~~~~~--vi~ei~~~m-k~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~ 246 (316)
+. +.+++||+||-++|.+...+ ++.++.+.+ ++++++. .++++.+..+.. .....-++++.|+-.|.+.+
T Consensus 78 ~~-~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~---~~~~~~r~~g~hf~~P~~~~-- 151 (286)
T PRK07819 78 DL-GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAA---ATKRPGRVLGLHFFNPVPVL-- 151 (286)
T ss_pred CH-HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCccEEEEecCCCcccC--
Confidence 55 56899999999999999865 677777777 8999887 456666666654 22223469999997777663
Q ss_pred HHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHH-HcCCCC
Q 021218 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSV-ALGSPF 288 (316)
Q Consensus 247 lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~-alG~~~ 288 (316)
+ ..=+++...++++.++.+..++. .+|..-
T Consensus 152 ----~--------lvElv~~~~T~~~~~~~~~~~~~~~lgk~p 182 (286)
T PRK07819 152 ----P--------LVELVPTLVTSEATVARAEEFASDVLGKQV 182 (286)
T ss_pred ----c--------eEEEeCCCCCCHHHHHHHHHHHHHhCCCCc
Confidence 1 12378899999999999999988 599553
No 87
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.06 E-value=1.6e-09 Score=109.71 Aligned_cols=147 Identities=17% Similarity=0.131 Sum_probs=101.1
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC--C--ceecCCCcCCHHhhh---ccCCEEEEc
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--G--FTEENGTLGDIYETI---SGSDLVLLL 185 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~--G--~~~~~~t~~~~~e~i---~~ADIViLa 185 (316)
+|||||+|+||.+||++|.+. |++|.+++|+.++..+...+. | +.. ..+.++++ +++|+|+++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~------G~~V~v~drt~~~~~~l~~~~~~g~~~~~----~~s~~e~v~~l~~~dvIil~ 70 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH------GFTVSVYNRTPEKTDEFLAEHAKGKKIVG----AYSIEEFVQSLERPRKIMLM 70 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc------CCeEEEEeCCHHHHHHHHhhccCCCCcee----cCCHHHHHhhcCCCCEEEEE
Confidence 489999999999999999999 999888887755443333221 2 332 34566655 579999999
Q ss_pred ccCchHH-HHHHHHHhcCCCCcEEEEeCCch----hhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCce
Q 021218 186 ISDAAQA-DNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (316)
Q Consensus 186 vp~~~~~-~vi~ei~~~mk~gaiLid~aGv~----l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~ 260 (316)
+|+.... ++++++.+++++|++|+|.+... ....+. ...+++.||.+...+ +.. .-+ .|.
T Consensus 71 v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~---l~~~gi~fvdapVsG-G~~---gA~-------~G~- 135 (467)
T TIGR00873 71 VKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKE---LKAKGILFVGSGVSG-GEE---GAR-------KGP- 135 (467)
T ss_pred CCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHH---HHhcCCEEEcCCCCC-CHH---HHh-------cCC-
Confidence 9996654 58899999999999999987543 111221 224578887766544 221 111 232
Q ss_pred EEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 261 SSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 261 ~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
+ +.+.. ++++.+.++.+++.++.+
T Consensus 136 ~-im~GG--~~~a~~~~~p~L~~ia~~ 159 (467)
T TIGR00873 136 S-IMPGG--SAEAWPLVAPIFQKIAAK 159 (467)
T ss_pred c-CCCCC--CHHHHHHHHHHHHHHhhh
Confidence 3 44543 568999999999999965
No 88
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=99.06 E-value=2.6e-10 Score=112.81 Aligned_cols=152 Identities=16% Similarity=0.149 Sum_probs=101.6
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
..+|.| ++|||||+|+||..+|+.++.+ |++|+++++.... . .+.. ...+++|++++||+|++
T Consensus 111 g~~l~g-ktvGIIG~G~IG~~va~~l~a~------G~~V~~~Dp~~~~-----~-~~~~----~~~~l~ell~~aDiV~l 173 (381)
T PRK00257 111 GVDLAE-RTYGVVGAGHVGGRLVRVLRGL------GWKVLVCDPPRQE-----A-EGDG----DFVSLERILEECDVISL 173 (381)
T ss_pred CCCcCc-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCcccc-----c-ccCc----cccCHHHHHhhCCEEEE
Confidence 367899 9999999999999999999999 9998776543211 1 1211 14589999999999999
Q ss_pred cccCch----HH-HHHH-HHHhcCCCCcEEEEeC-Cch------hhhhhccccCCCCCccEEEeccCCCchhhHHHHhcC
Q 021218 185 LISDAA----QA-DNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (316)
Q Consensus 185 avp~~~----~~-~vi~-ei~~~mk~gaiLid~a-Gv~------l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G 251 (316)
|+|.+. .+ .+++ +.+..||+|++|+.++ |-. +..+++ +......++|....|. +... +..
T Consensus 174 h~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~-g~i~~a~LDV~e~EP~-~~~~---L~~-- 246 (381)
T PRK00257 174 HTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLS-GEDLDAVLDVWEGEPQ-IDLE---LAD-- 246 (381)
T ss_pred eCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHh-CCCcEEEEeCCCCCCC-CChh---hhh--
Confidence 999987 24 4776 7899999999999764 422 233333 2222345667777784 2222 221
Q ss_pred ccccCCCceEEEeeccC-CCHHHHH-----HHHHHHHHcCCC
Q 021218 252 KEINGAGINSSFAVHQD-VDGRATN-----VALGWSVALGSP 287 (316)
Q Consensus 252 ~e~~G~G~~~iiap~~d-~~~~a~e-----~a~~l~~alG~~ 287 (316)
.|.++|||-- .+.+..+ .++.+.+.+|..
T Consensus 247 -------~nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~ 281 (381)
T PRK00257 247 -------LCTIATPHIAGYSLDGKARGTAQIYQALCRFFGIP 281 (381)
T ss_pred -------CCEEEcCccccCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 3688999863 3444333 334455556654
No 89
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=99.06 E-value=2.5e-09 Score=103.89 Aligned_cols=164 Identities=15% Similarity=0.143 Sum_probs=121.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh-ccCCEEEEcccCch
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i-~~ADIViLavp~~~ 190 (316)
.+|||||+|+||+=+|.-+.+. |+.++...|.+ --..+++.|..- ...+.+++ +..|+|++|+.-..
T Consensus 53 l~IaIIGfGnmGqflAetli~a------Gh~li~hsRsd--yssaa~~yg~~~----ft~lhdlcerhpDvvLlctsils 120 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDA------GHGLICHSRSD--YSSAAEKYGSAK----FTLLHDLCERHPDVVLLCTSILS 120 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhc------CceeEecCcch--hHHHHHHhcccc----cccHHHHHhcCCCEEEEEehhhh
Confidence 7899999999999999999999 99887777764 334566676542 33555544 68999999999888
Q ss_pred HHHHHHHHHh-cCCCCcEEEEeCCch---hhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeec
Q 021218 191 QADNYEKIFS-CMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (316)
Q Consensus 191 ~~~vi~ei~~-~mk~gaiLid~aGv~---l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~ 266 (316)
+.+++...-. .+|.|++++++-.++ ....++ .+|++++++.+|| +-|+...+ -.++|.+.++--+
T Consensus 121 iekilatypfqrlrrgtlfvdvlSvKefek~lfek---YLPkdfDIlctHp-mfGPksvn-------h~wqglpfVydkv 189 (480)
T KOG2380|consen 121 IEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEK---YLPKDFDILCTHP-MFGPKSVN-------HEWQGLPFVYDKV 189 (480)
T ss_pred HHHHHHhcCchhhccceeEeeeeecchhHHHHHHH---hCccccceEeecC-CcCCCcCC-------CccccCceEEEEe
Confidence 8888886644 489999999887765 333334 7899999999999 44554111 1235678877665
Q ss_pred cC----CCHHHHHHHHHHHHHcCCCCeeecChhHHHh
Q 021218 267 QD----VDGRATNVALGWSVALGSPFTFATTLEQEYR 299 (316)
Q Consensus 267 ~d----~~~~a~e~a~~l~~alG~~~~~~tT~~~e~~ 299 (316)
.- ..++.-|.+.+++.-.|++ .++.|.++|-+
T Consensus 190 Rig~~~~r~ercE~fleIf~cegck-mVemS~eeHDk 225 (480)
T KOG2380|consen 190 RIGYAASRPERCEFFLEIFACEGCK-MVEMSYEEHDK 225 (480)
T ss_pred eccccccchHHHHHHHHHHHhcCCe-EEEEEeecccc
Confidence 43 3378889999999999964 66777777744
No 90
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.05 E-value=1e-09 Score=105.31 Aligned_cols=148 Identities=14% Similarity=0.087 Sum_probs=91.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC--------CceecC--CCcCCHHhhhccCCE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEEN--GTLGDIYETISGSDL 181 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~--------G~~~~~--~t~~~~~e~i~~ADI 181 (316)
|+|+|||.|.||.++|..|.+. |++|.++.|+.+. .+...+. |..... ....++.++++++|+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~------G~~V~~~~r~~~~-~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~ 77 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK------GVPVRLWARRPEF-AAALAAERENREYLPGVALPAELYPTADPEEALAGADF 77 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCE
Confidence 8999999999999999999998 9998888775332 2222222 311000 013477888899999
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEE-eCCch-----hhhhhccccCCCC---CccEEEeccCCCchhhHHHHhcCc
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGL-SHGFL-----LGHLQSMGLDFPK---NIGVIAVCPKGMGPSVRRLYVQGK 252 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid-~aGv~-----l~~l~~~~~~~~~---~i~vI~vhPn~pg~~~r~lf~~G~ 252 (316)
|++++|++...+++ +.++++.++++ +.|+. ...+.+ .+++ .--.+...|+.+... +
T Consensus 78 Vi~~v~~~~~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~---~l~~~~~~~~~~~~gP~~a~~~-------~- 142 (328)
T PRK14618 78 AVVAVPSKALRETL----AGLPRALGYVSCAKGLAPDGGRLSELAR---VLEFLTQARVAVLSGPNHAEEI-------A- 142 (328)
T ss_pred EEEECchHHHHHHH----HhcCcCCEEEEEeeccccCCCccchHHH---HHHHhcCCCeEEEECccHHHHH-------H-
Confidence 99999999765555 55677877664 45653 222222 1111 112356777664443 2
Q ss_pred cccCCCceEEEeeccCCCHHHHHHHHHHHHHcCC
Q 021218 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (316)
Q Consensus 253 e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~ 286 (316)
+|... ++.-...+.+..+.++.+++..|.
T Consensus 143 ----~~~~~-~~~~~~~~~~~~~~v~~ll~~~~~ 171 (328)
T PRK14618 143 ----RFLPA-ATVVASPEPGLARRVQAAFSGPSF 171 (328)
T ss_pred ----cCCCe-EEEEEeCCHHHHHHHHHHhCCCcE
Confidence 22222 111123456788888888888774
No 91
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.04 E-value=1.3e-09 Score=105.68 Aligned_cols=122 Identities=14% Similarity=0.123 Sum_probs=82.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC---------ceecC--CCcCCHHhhhccC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---------FTEEN--GTLGDIYETISGS 179 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G---------~~~~~--~t~~~~~e~i~~A 179 (316)
+++|+|||.|+||.++|..|.+. | ++.++.++. +..+...+.+ +...+ ....+..++++++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~------g-~v~l~~~~~-~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~a 78 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARR------G-PTLQWVRSA-ETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCA 78 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC------C-CEEEEeCCH-HHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcC
Confidence 47999999999999999999988 7 455555442 2222222222 10000 0134677889999
Q ss_pred CEEEEcccCchHHHHHHHHHhcCCCCcEE-EEeCCchh-------hhhhccccCCCCCccEEEeccCCCchh
Q 021218 180 DLVLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-------GHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~~~mk~gaiL-id~aGv~l-------~~l~~~~~~~~~~i~vI~vhPn~pg~~ 243 (316)
|+|++++|.+...++++++.+++++++++ +...|+.. +.+++ .++.....+...|+.+...
T Consensus 79 DlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~---~l~~~~~~~l~GP~~a~ev 147 (341)
T PRK12439 79 DVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEE---VLPGHPAGILAGPNIAREV 147 (341)
T ss_pred CEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHH---HcCCCCeEEEECCCHHHHH
Confidence 99999999999999999999999888754 47778763 34544 3443334567888765443
No 92
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.04 E-value=4.2e-09 Score=107.61 Aligned_cols=154 Identities=12% Similarity=0.129 Sum_probs=112.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CCcC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~t~~ 170 (316)
+++|||||.|.||..+|+.+... |++|.+.+++.+. .+. ..+.|..... ....
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~a------G~~V~l~d~~~e~-l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~ 77 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASA------GHQVLLYDIRAEA-LARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVT 77 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeC
Confidence 48999999999999999999999 9999888776432 222 2334421000 0134
Q ss_pred CHHhhhccCCEEEEcccCchHHH--HHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHH
Q 021218 171 DIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (316)
Q Consensus 171 ~~~e~i~~ADIViLavp~~~~~~--vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~l 247 (316)
+.++ +++||+||-++|.+...+ ++.++...++++++|. .++++.+..+.. ......++++.|.--|.+.+
T Consensus 78 ~~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~---~~~~p~r~~G~HFf~Papv~--- 150 (503)
T TIGR02279 78 DLHA-LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAA---GLARPERVAGLHFFNPAPVM--- 150 (503)
T ss_pred CHHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHH---hcCcccceEEEeccCccccC---
Confidence 5654 579999999999887654 6778888888988875 677777665544 23334578999997777764
Q ss_pred HhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 248 f~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
. -..+++...++++.++.+..+++.+|..-+
T Consensus 151 ---~--------LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv 181 (503)
T TIGR02279 151 ---A--------LVEVVSGLATAAEVAEQLYETALAWGKQPV 181 (503)
T ss_pred ---c--------eEEEeCCCCCCHHHHHHHHHHHHHcCCeee
Confidence 1 244778889999999999999999996543
No 93
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.00 E-value=1.5e-08 Score=90.28 Aligned_cols=149 Identities=15% Similarity=0.156 Sum_probs=101.4
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHH-----------HHHCCceec---------CCCcCCH
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEE---------NGTLGDI 172 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~---------~~t~~~~ 172 (316)
||+|||.|.||.++|..+... |++|.+.+.+.+ ..+. ..+.|.... -....++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~-~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl 73 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA------GYEVTLYDRSPE-ALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDL 73 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT------TSEEEEE-SSHH-HHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSG
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCcEEEEECChH-HHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCH
Confidence 699999999999999999999 999988876543 1111 111221100 0014577
Q ss_pred HhhhccCCEEEEcccCchHHH--HHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHh
Q 021218 173 YETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (316)
Q Consensus 173 ~e~i~~ADIViLavp~~~~~~--vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~ 249 (316)
+++. +||+||=++|.....+ ++.++.+.++++++|. .++++.+..+.. .+...-++++.|+-.|.+.+
T Consensus 74 ~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~---~~~~p~R~ig~Hf~~P~~~~----- 144 (180)
T PF02737_consen 74 EEAV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAA---ALSRPERFIGMHFFNPPHLM----- 144 (180)
T ss_dssp GGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHT---TSSTGGGEEEEEE-SSTTT------
T ss_pred HHHh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHh---ccCcCceEEEEecccccccC-----
Confidence 7777 9999999999888754 8899999999999876 788888888776 33344579999996666542
Q ss_pred cCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCC
Q 021218 250 QGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (316)
Q Consensus 250 ~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~ 286 (316)
--.=+.++..++++.++.+.++++.+|.
T Consensus 145 ---------~lVEvv~~~~T~~~~~~~~~~~~~~~gk 172 (180)
T PF02737_consen 145 ---------PLVEVVPGPKTSPETVDRVRALLRSLGK 172 (180)
T ss_dssp ----------EEEEEE-TTS-HHHHHHHHHHHHHTT-
T ss_pred ---------ceEEEeCCCCCCHHHHHHHHHHHHHCCC
Confidence 1122788999999999999999999984
No 94
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.97 E-value=1e-08 Score=101.62 Aligned_cols=161 Identities=17% Similarity=0.129 Sum_probs=99.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHH-------------------HCC-ceecCCCcCC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-------------------AAG-FTEENGTLGD 171 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~-------------------~~G-~~~~~~t~~~ 171 (316)
|+|+|||+|.||.++|..|.+. |++|++.+++..+ .+... +.| +.. ..+
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~------G~~V~~~d~~~~~-v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~----~~~ 69 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL------GHEVTGVDIDQEK-VDKLNKGKSPIYEPGLDELLAKALAAGRLRA----TTD 69 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc------CCeEEEEECCHHH-HHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE----ECC
Confidence 5899999999999999999998 9988776654332 22111 123 221 346
Q ss_pred HHhhhccCCEEEEcccCch----------HHHHHHHHHhcCCCCcEEEEeCCch----hhh---hhccccCCCCCcc-EE
Q 021218 172 IYETISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILGLSHGFL----LGH---LQSMGLDFPKNIG-VI 233 (316)
Q Consensus 172 ~~e~i~~ADIViLavp~~~----------~~~vi~ei~~~mk~gaiLid~aGv~----l~~---l~~~~~~~~~~i~-vI 233 (316)
..+++++||+||+|+|... ...+++++.+.+++|++|++.+++. ... +.+.........+ .+
T Consensus 70 ~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v 149 (411)
T TIGR03026 70 YEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYL 149 (411)
T ss_pred HHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceE
Confidence 7788999999999999653 4456778889999999999887542 111 1110000111233 36
Q ss_pred EeccCC--CchhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcC-CCCeeecChh
Q 021218 234 AVCPKG--MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG-SPFTFATTLE 295 (316)
Q Consensus 234 ~vhPn~--pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG-~~~~~~tT~~ 295 (316)
..+|.. +|..+.+++. -..++.- .++++.+.++.+++.++ ...+..++++
T Consensus 150 ~~~Pe~~~~G~~~~~~~~---------~~~iv~G---~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 202 (411)
T TIGR03026 150 AYNPEFLREGNAVHDLLN---------PDRIVGG---ETEEAGEAVAELYAPIIEDGPVLVTSIE 202 (411)
T ss_pred EECCCcCCCCChhhhhcC---------CCEEEEe---CCHHHHHHHHHHHHHhccCCCEEcCCHH
Confidence 777733 2222211111 1122222 36789999999999998 3444444443
No 95
>PLN02858 fructose-bisphosphate aldolase
Probab=98.93 E-value=1e-08 Score=115.30 Aligned_cols=152 Identities=19% Similarity=0.181 Sum_probs=101.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
++|||||+|+||.+||++|.+. |++|.++++..+ ..+...+.|... ..+..+++++||+|++++|+..+
T Consensus 325 ~~IGfIGlG~MG~~mA~~L~~~------G~~V~v~dr~~~-~~~~l~~~Ga~~----~~s~~e~~~~aDvVi~~V~~~~~ 393 (1378)
T PLN02858 325 KRIGFIGLGAMGFGMASHLLKS------NFSVCGYDVYKP-TLVRFENAGGLA----GNSPAEVAKDVDVLVIMVANEVQ 393 (1378)
T ss_pred CeEEEECchHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHHcCCee----cCCHHHHHhcCCEEEEecCChHH
Confidence 8999999999999999999999 999888776543 344455566543 45788999999999999996665
Q ss_pred H-HHH---HHHHhcCCCCcEEEEeCCchhhhhhccccCC---CCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEe
Q 021218 192 A-DNY---EKIFSCMKPNSILGLSHGFLLGHLQSMGLDF---PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (316)
Q Consensus 192 ~-~vi---~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~---~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iia 264 (316)
. +++ ..+.+.+++|++++|.+.+.....++....+ ..++.|+- .|-.-++. .-. .|--.+++
T Consensus 394 v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lD-APVsGg~~---~A~-------~G~L~imv 462 (1378)
T PLN02858 394 AENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVD-APVSGGVK---RAA-------MGTLTIMA 462 (1378)
T ss_pred HHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEE-ccCCCChh---hhh-------cCCceEEE
Confidence 4 566 2578889999999998876533221100011 13566553 33222221 011 23333233
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCC
Q 021218 265 VHQDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 265 p~~d~~~~a~e~a~~l~~alG~~~ 288 (316)
-. +++..+.++.+++.+|.+.
T Consensus 463 gG---~~~~~~~~~plL~~lg~~i 483 (1378)
T PLN02858 463 SG---TDEALKSAGSVLSALSEKL 483 (1378)
T ss_pred EC---CHHHHHHHHHHHHHHhCcE
Confidence 32 4578999999999999643
No 96
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.91 E-value=4.4e-08 Score=97.73 Aligned_cols=163 Identities=17% Similarity=0.108 Sum_probs=99.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh---------------
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--------------- 175 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~--------------- 175 (316)
+++|+|||+|.||.++|..|.+. |++|+..+++ +...+ +.+.|.... ....++++
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~------G~~V~~~D~~-~~~v~-~l~~g~~~~--~e~~l~~~l~~~~~~g~l~~~~~ 72 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR------QKQVIGVDIN-QHAVD-TINRGEIHI--VEPDLDMVVKTAVEGGYLRATTT 72 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC------CCEEEEEeCC-HHHHH-HHHCCCCCc--CCCCHHHHHHHHhhcCceeeecc
Confidence 58999999999999999999999 9987766554 33333 334443311 01122222
Q ss_pred hccCCEEEEcccCc----------hHHHHHHHHHhcCCCCcEEEEeCCchh---hh----hhccccC--CC----CCcc-
Q 021218 176 ISGSDLVLLLISDA----------AQADNYEKIFSCMKPNSILGLSHGFLL---GH----LQSMGLD--FP----KNIG- 231 (316)
Q Consensus 176 i~~ADIViLavp~~----------~~~~vi~ei~~~mk~gaiLid~aGv~l---~~----l~~~~~~--~~----~~i~- 231 (316)
+++||+||+|+|.. .....++.+.+++++|++|++.+.+.. .. +.+.+.. .| .+.+
T Consensus 73 ~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f 152 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADI 152 (415)
T ss_pred cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCe
Confidence 34899999999974 445577789999999999988765431 11 2221111 11 0112
Q ss_pred EEEecc--CCCchhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCeeecChh
Q 021218 232 VIAVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLE 295 (316)
Q Consensus 232 vI~vhP--n~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~~~tT~~ 295 (316)
.+...| -.+|....+... .+. +. ...+++..+.++.+++.++..-+..++++
T Consensus 153 ~v~~~PE~~~~G~~~~~~~~---------~~~-vv--gG~~~~~~~~~~~ly~~~~~~~~~~~~~~ 206 (415)
T PRK11064 153 NIAYCPERVLPGQVMVELIK---------NDR-VI--GGMTPVCSARASELYKIFLEGECVVTNSR 206 (415)
T ss_pred EEEECCCccCCCChhhhhcC---------CCE-EE--EeCCHHHHHHHHHHHHHhcCCCeeeCCHH
Confidence 345666 344544322211 223 22 22367889999999999986544445543
No 97
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.88 E-value=7.9e-09 Score=89.62 Aligned_cols=95 Identities=23% Similarity=0.332 Sum_probs=69.4
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec----------CCCcCCHHhhhccCCEE
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE----------NGTLGDIYETISGSDLV 182 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~----------~~t~~~~~e~i~~ADIV 182 (316)
||+|||.|++|.++|..|.+. |++|.++.|+.+ ..+.-.+.+.... -....|++++++++|+|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~------g~~V~l~~~~~~-~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~I 73 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN------GHEVTLWGRDEE-QIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADII 73 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC------TEEEEEETSCHH-HHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEE
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCEEEEEeccHH-HHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEE
Confidence 799999999999999999999 999888877643 2222222221100 00146889999999999
Q ss_pred EEcccCchHHHHHHHHHhcCCCCcEEEE-eCCc
Q 021218 183 LLLISDAAQADNYEKIFSCMKPNSILGL-SHGF 214 (316)
Q Consensus 183 iLavp~~~~~~vi~ei~~~mk~gaiLid-~aGv 214 (316)
++++|.+.+.++++++.++++++++++. ..|+
T Consensus 74 iiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 74 IIAVPSQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp EE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred EecccHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 9999999999999999999999998775 4576
No 98
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.88 E-value=5.7e-08 Score=91.32 Aligned_cols=157 Identities=18% Similarity=0.185 Sum_probs=98.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCC---------CcCCHHhhhccCCEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG---------TLGDIYETISGSDLV 182 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~---------t~~~~~e~i~~ADIV 182 (316)
|+|+|||.|.||..+|..|.+. |++|.+..| . +..+...+.|+...+. ...+.+++.+.+|+|
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~------g~~V~~~~r-~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 72 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA------GRDVTFLVR-P-KRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLV 72 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCceEEEec-H-HHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEE
Confidence 5899999999999999999998 888887777 3 3344445556432110 123456667899999
Q ss_pred EEcccCchHHHHHHHHHhcCCCCcEEE-EeCCch-hhhhhccccCCCCCccEE------EeccCCCchhhHHHHhcCccc
Q 021218 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQSMGLDFPKNIGVI------AVCPKGMGPSVRRLYVQGKEI 254 (316)
Q Consensus 183 iLavp~~~~~~vi~ei~~~mk~gaiLi-d~aGv~-l~~l~~~~~~~~~~i~vI------~vhPn~pg~~~r~lf~~G~e~ 254 (316)
++++|.....++++++.++++++.+|+ ...|+. ...+.. .+|++ .++ ......|+... .
T Consensus 73 ilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~---~~~~~-~v~~g~~~~~~~~~~~g~v~-----~---- 139 (305)
T PRK12921 73 ILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEP---YFGRE-RVLGGVVFISAQLNGDGVVV-----Q---- 139 (305)
T ss_pred EEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHH---hCCcc-cEEEEEEEEEEEECCCeEEE-----E----
Confidence 999999999899999999888888765 556775 334443 34432 222 23323333331 0
Q ss_pred cCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCee
Q 021218 255 NGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (316)
Q Consensus 255 ~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~~ 290 (316)
.+.+. ..+...+....+..+.+.+++...|.+...
T Consensus 140 ~~~~~-~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~ 174 (305)
T PRK12921 140 RADHR-LTFGEIPGQRSERTRAVRDALAGARLEVVL 174 (305)
T ss_pred cCCCc-EEEcCCCCCcCHHHHHHHHHHHhCCCCcee
Confidence 01222 224333333345555666777777755433
No 99
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.88 E-value=9.1e-09 Score=98.20 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=66.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~ 188 (316)
.+ |+|+|||.|+||.++|+.|.+. |++|.++.|+.. .++.++++++|+|++++|+
T Consensus 3 ~~-m~I~iiG~G~~G~~lA~~l~~~------G~~V~~~~r~~~------------------~~~~~~~~~advvi~~vp~ 57 (308)
T PRK14619 3 QP-KTIAILGAGAWGSTLAGLASAN------GHRVRVWSRRSG------------------LSLAAVLADADVIVSAVSM 57 (308)
T ss_pred CC-CEEEEECccHHHHHHHHHHHHC------CCEEEEEeCCCC------------------CCHHHHHhcCCEEEEECCh
Confidence 35 8999999999999999999999 999988877532 1577888999999999999
Q ss_pred chHHHHHHHHHhc-CCCCcEEEEeC
Q 021218 189 AAQADNYEKIFSC-MKPNSILGLSH 212 (316)
Q Consensus 189 ~~~~~vi~ei~~~-mk~gaiLid~a 212 (316)
....++++++.++ ++++++++++.
T Consensus 58 ~~~~~v~~~l~~~~~~~~~ivi~~s 82 (308)
T PRK14619 58 KGVRPVAEQVQALNLPPETIIVTAT 82 (308)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 8777888888764 78888887754
No 100
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=98.86 E-value=1.6e-08 Score=96.87 Aligned_cols=151 Identities=19% Similarity=0.139 Sum_probs=103.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
++|||||+|+||.+|+.+|.+. |++|++++|.-++ .+.-++.|... ..++.|++++||+||.++|+..+
T Consensus 36 ~~iGFIGLG~MG~~M~~nLik~------G~kVtV~dr~~~k-~~~f~~~Ga~v----~~sPaeVae~sDvvitmv~~~~~ 104 (327)
T KOG0409|consen 36 TRIGFIGLGNMGSAMVSNLIKA------GYKVTVYDRTKDK-CKEFQEAGARV----ANSPAEVAEDSDVVITMVPNPKD 104 (327)
T ss_pred ceeeEEeeccchHHHHHHHHHc------CCEEEEEeCcHHH-HHHHHHhchhh----hCCHHHHHhhcCEEEEEcCChHh
Confidence 8999999999999999999999 9999999877543 45556677664 56899999999999999999888
Q ss_pred HH-HHH---HHHhcCCCCcEE-EEeCCchhh---hhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEE
Q 021218 192 AD-NYE---KIFSCMKPNSIL-GLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (316)
Q Consensus 192 ~~-vi~---ei~~~mk~gaiL-id~aGv~l~---~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~ii 263 (316)
.+ ++. -++..+++|... +|++.+... .+++. .-..+-.+|- .| .+.-+..-++ |.-.|+
T Consensus 105 v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~--i~~~~~~~vD-AP---VSGg~~~A~~-------G~Ltim 171 (327)
T KOG0409|consen 105 VKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKA--ISNKGGRFVD-AP---VSGGVKGAEE-------GTLTIM 171 (327)
T ss_pred hHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHH--HHhCCCeEEe-cc---ccCCchhhhc-------CeEEEE
Confidence 75 664 467778888877 788876422 22220 1123444443 23 1100011112 333333
Q ss_pred eeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 264 AVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 264 ap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
+- -++...+.+..+++.+|...+
T Consensus 172 ag---Gde~~~~~~~~~~~~mGk~~~ 194 (327)
T KOG0409|consen 172 AG---GDEALFEAASPVFKLMGKNVV 194 (327)
T ss_pred ec---CcHHHHHHHHHHHHHhcceEE
Confidence 33 556788888899999995543
No 101
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=98.83 E-value=2.3e-08 Score=101.33 Aligned_cols=94 Identities=22% Similarity=0.250 Sum_probs=75.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
..|.| ++++|||+|.+|..+|+.++.+ |++|++.++...+ ...+...|+. ..+++++++++|+|++|
T Consensus 250 ~~LaG-KtVgVIG~G~IGr~vA~rL~a~------Ga~ViV~e~dp~~-a~~A~~~G~~-----~~~leell~~ADIVI~a 316 (476)
T PTZ00075 250 VMIAG-KTVVVCGYGDVGKGCAQALRGF------GARVVVTEIDPIC-ALQAAMEGYQ-----VVTLEDVVETADIFVTA 316 (476)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchh-HHHHHhcCce-----eccHHHHHhcCCEEEEC
Confidence 47899 9999999999999999999999 9998877665333 3345556775 34789999999999999
Q ss_pred ccCchHHHHHH-HHHhcCCCCcEEEEeCCch
Q 021218 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 186 vp~~~~~~vi~-ei~~~mk~gaiLid~aGv~ 215 (316)
+. ...+++ +.++.||+|++|+.++-+.
T Consensus 317 tG---t~~iI~~e~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 317 TG---NKDIITLEHMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred CC---cccccCHHHHhccCCCcEEEEcCCCc
Confidence 74 344776 8899999999999876543
No 102
>PLN02858 fructose-bisphosphate aldolase
Probab=98.81 E-value=5.2e-08 Score=109.72 Aligned_cols=151 Identities=15% Similarity=0.116 Sum_probs=102.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
++|||||+|+||..||++|.+. |++|.++++.. ...+...+.|... ..+..|++++||+||+++|+..+
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~------G~~v~v~dr~~-~~~~~l~~~Ga~~----~~s~~e~a~~advVi~~l~~~~~ 73 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRS------GFKVQAFEIST-PLMEKFCELGGHR----CDSPAEAAKDAAALVVVLSHPDQ 73 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHC------CCeEEEEcCCH-HHHHHHHHcCCee----cCCHHHHHhcCCEEEEEcCChHH
Confidence 7899999999999999999999 99988877754 3444555677654 56899999999999999999888
Q ss_pred HH-HH---HHHHhcCCCCcEEEEeCCchhhhhhccccCC-CCC--ccEEEeccCCCchhhHHHHhcCccccCCCceEEEe
Q 021218 192 AD-NY---EKIFSCMKPNSILGLSHGFLLGHLQSMGLDF-PKN--IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (316)
Q Consensus 192 ~~-vi---~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~-~~~--i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iia 264 (316)
.+ ++ +.+.+.+++|++++|.+.+.....++....+ ..+ +.||- +|-.=++. .-++| .-. +-
T Consensus 74 v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lD-aPVsGg~~---~A~~G-------~L~-im 141 (1378)
T PLN02858 74 VDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVD-AYVSKGMS---DLLNG-------KLM-II 141 (1378)
T ss_pred HHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEE-ccCcCCHH---HHhcC-------CeE-EE
Confidence 65 65 3588889999999998866532211100011 123 55543 34111111 11223 223 23
Q ss_pred eccCCCHHHHHHHHHHHHHcCCC
Q 021218 265 VHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 265 p~~d~~~~a~e~a~~l~~alG~~ 287 (316)
... +++..+.++.+++.+|.+
T Consensus 142 vGG--~~~~~~~~~p~l~~~g~~ 162 (1378)
T PLN02858 142 ASG--RSDAITRAQPFLSAMCQK 162 (1378)
T ss_pred EcC--CHHHHHHHHHHHHHhcCc
Confidence 332 446888999999999954
No 103
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.81 E-value=1.6e-07 Score=88.05 Aligned_cols=102 Identities=21% Similarity=0.274 Sum_probs=74.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecC-------CCcCCHHhhhccCCEEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-------GTLGDIYETISGSDLVLL 184 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~-------~t~~~~~e~i~~ADIViL 184 (316)
|+|+|||.|.||..+|..|.+. |++|.+..|+.+ ..+...+.|+...+ ....+..++ +.+|+|++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~------g~~V~~~~r~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vil 72 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA------GHDVTLVARRGA-HLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVIL 72 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECChH-HHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEE
Confidence 5799999999999999999998 888887777533 34444455653100 112345554 89999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEE-EeCCch-hhhhhc
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQS 221 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLi-d~aGv~-l~~l~~ 221 (316)
++|.....++++++.+++.++++|+ ...|+. ...+..
T Consensus 73 a~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~ 111 (304)
T PRK06522 73 AVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAA 111 (304)
T ss_pred ecccccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHH
Confidence 9999998889999999998876554 667875 344443
No 104
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.80 E-value=1.7e-08 Score=96.31 Aligned_cols=115 Identities=17% Similarity=0.232 Sum_probs=81.7
Q ss_pred ccchhhHHhhcCCcccc--ccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCce
Q 021218 86 LADRDEYIVRGGRDLFN--LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (316)
Q Consensus 86 l~~~~e~vv~~G~w~F~--~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (316)
.+.|+..-+-+|.|... ....++.| ++++|||+|.||.++|+.|+.. |++|.+.+|+.+ ..+.+.+.|..
T Consensus 125 va~~n~~~~Ae~ai~~al~~~~~~l~g-k~v~IiG~G~iG~avA~~L~~~------G~~V~v~~R~~~-~~~~~~~~g~~ 196 (287)
T TIGR02853 125 VAIYNSIPTAEGAIMMAIEHTDFTIHG-SNVMVLGFGRTGMTIARTFSAL------GARVFVGARSSA-DLARITEMGLI 196 (287)
T ss_pred eEEEccHhHHHHHHHHHHHhcCCCCCC-CEEEEEcChHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHHCCCe
Confidence 34455444444555321 12358899 9999999999999999999999 999888887643 33445555654
Q ss_pred ecCCCcCCHHhhhccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 164 EENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 164 ~~~~t~~~~~e~i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
.. ...++.+.++++|+||+++|..... .+.++.|+++++|+|++.
T Consensus 197 ~~--~~~~l~~~l~~aDiVint~P~~ii~---~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 197 PF--PLNKLEEKVAEIDIVINTIPALVLT---ADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred ee--cHHHHHHHhccCCEEEECCChHHhC---HHHHhcCCCCeEEEEeCc
Confidence 21 1235678899999999999975221 357788999999998864
No 105
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.79 E-value=5.5e-09 Score=88.65 Aligned_cols=119 Identities=18% Similarity=0.097 Sum_probs=78.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
++++ ++|+|||.|.||.++++.+++. | .+|.+.+++.++..+.+.+.+.........+..++++++|+|+++
T Consensus 16 ~~~~-~~i~iiG~G~~g~~~a~~l~~~------g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~ 88 (155)
T cd01065 16 ELKG-KKVLILGAGGAARAVAYALAEL------GAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINT 88 (155)
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeC
Confidence 4678 9999999999999999999987 6 567777665444334444444210000134677788999999999
Q ss_pred ccCchH-HH--HHHHHHhcCCCCcEEEEeCCchh--hhhhccccCCCCCccEEEecc
Q 021218 186 ISDAAQ-AD--NYEKIFSCMKPNSILGLSHGFLL--GHLQSMGLDFPKNIGVIAVCP 237 (316)
Q Consensus 186 vp~~~~-~~--vi~ei~~~mk~gaiLid~aGv~l--~~l~~~~~~~~~~i~vI~vhP 237 (316)
+|+..+ .+ .+. ...++++.+++|++..+. ...+. .-..+..+|.+||
T Consensus 89 ~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~---~~~~g~~~v~g~~ 140 (155)
T cd01065 89 TPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKE---ARALGAKTIDGLE 140 (155)
T ss_pred cCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHH---HHHCCCceeCCHH
Confidence 999886 21 121 123689999999875542 22222 1123677787777
No 106
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=98.79 E-value=1.3e-07 Score=90.60 Aligned_cols=102 Identities=26% Similarity=0.296 Sum_probs=74.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecC--C-----------CcCCHHhhhc
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G-----------TLGDIYETIS 177 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~--~-----------t~~~~~e~i~ 177 (316)
||+|+|||.|.||.++|..|.+. |++|.+.+|.. ..+...+.|....+ + ...+. +.++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~------G~~V~~~~r~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 72 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA------GADVTLIGRAR--IGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALA 72 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc------CCcEEEEecHH--HHHHHHhcCceeecCCCcceecccceeEeccCh-hhcc
Confidence 48899999999999999999999 99888877642 23344445543211 0 01233 5678
Q ss_pred cCCEEEEcccCchHHHHHHHHHhcCCCCcEEEE-eCCch-hhhhhc
Q 021218 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGL-SHGFL-LGHLQS 221 (316)
Q Consensus 178 ~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid-~aGv~-l~~l~~ 221 (316)
++|+|++++|.....++++++.++++++++|++ ..|+. ...++.
T Consensus 73 ~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~ 118 (341)
T PRK08229 73 TADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNADVLRA 118 (341)
T ss_pred CCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHH
Confidence 999999999999888899999999999998764 45665 334544
No 107
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.71 E-value=3.3e-08 Score=87.33 Aligned_cols=94 Identities=24% Similarity=0.307 Sum_probs=68.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
..|.| |++.|+|+|..|..+|+.||.. |.+|++.+.++-+ .-+|...|+. +.+++|+++++|+++.+
T Consensus 19 ~~l~G-k~vvV~GYG~vG~g~A~~lr~~------Ga~V~V~e~DPi~-alqA~~dGf~-----v~~~~~a~~~adi~vta 85 (162)
T PF00670_consen 19 LMLAG-KRVVVIGYGKVGKGIARALRGL------GARVTVTEIDPIR-ALQAAMDGFE-----VMTLEEALRDADIFVTA 85 (162)
T ss_dssp S--TT-SEEEEE--SHHHHHHHHHHHHT------T-EEEEE-SSHHH-HHHHHHTT-E-----EE-HHHHTTT-SEEEE-
T ss_pred eeeCC-CEEEEeCCCcccHHHHHHHhhC------CCEEEEEECChHH-HHHhhhcCcE-----ecCHHHHHhhCCEEEEC
Confidence 56789 9999999999999999999999 9999888876443 4467778998 45899999999999999
Q ss_pred ccCchHHHHHH-HHHhcCCCCcEEEEeCCch
Q 021218 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 186 vp~~~~~~vi~-ei~~~mk~gaiLid~aGv~ 215 (316)
+-... ++. +.+..||+|++|..++.+.
T Consensus 86 TG~~~---vi~~e~~~~mkdgail~n~Gh~d 113 (162)
T PF00670_consen 86 TGNKD---VITGEHFRQMKDGAILANAGHFD 113 (162)
T ss_dssp SSSSS---SB-HHHHHHS-TTEEEEESSSST
T ss_pred CCCcc---ccCHHHHHHhcCCeEEeccCcCc
Confidence 88754 333 6677899999999888764
No 108
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.70 E-value=1.7e-07 Score=89.86 Aligned_cols=97 Identities=22% Similarity=0.286 Sum_probs=69.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC--Cce------ecC--CCcCCHHhhh-ccCC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFT------EEN--GTLGDIYETI-SGSD 180 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~--G~~------~~~--~t~~~~~e~i-~~AD 180 (316)
|+|+|||.|.||.++|..|.+. |++|.+..|+.+ ..+.-.+. +.. ..+ ....+..+.+ ..+|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~------g~~V~l~~r~~~-~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~D 73 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK------KISVNLWGRNHT-TFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNAT 73 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCeEEEEecCHH-HHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCC
Confidence 5799999999999999999998 988887776532 22222221 110 000 0124566666 5899
Q ss_pred EEEEcccCchHHHHHHHHHh-cCCCCc-EEEEeCCch
Q 021218 181 LVLLLISDAAQADNYEKIFS-CMKPNS-ILGLSHGFL 215 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~-~mk~ga-iLid~aGv~ 215 (316)
+||+++|++...++++++.+ +++++. +|+...|+.
T Consensus 74 liiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~ 110 (326)
T PRK14620 74 CIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIE 110 (326)
T ss_pred EEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence 99999999999999999998 888776 455777873
No 109
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.68 E-value=3.8e-07 Score=96.87 Aligned_cols=156 Identities=10% Similarity=0.090 Sum_probs=114.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHH-----------HHHHCCceecC---------CC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-----------EARAAGFTEEN---------GT 168 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~-----------~A~~~G~~~~~---------~t 168 (316)
..|++|+|||.|.||..+|..+... |++|++.+.+.+ ..+ ...+.|...+. ..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~ 383 (715)
T PRK11730 311 KPVKQAAVLGAGIMGGGIAYQSASK------GVPVIMKDINQK-ALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP 383 (715)
T ss_pred cccceEEEECCchhHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence 3558999999999999999999988 999888776533 221 12222321100 00
Q ss_pred cCCHHhhhccCCEEEEcccCchHHH--HHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhH
Q 021218 169 LGDIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (316)
Q Consensus 169 ~~~~~e~i~~ADIViLavp~~~~~~--vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r 245 (316)
..+. +.+++||+||=++|.+-..+ ++.++-++++++++|. .++++.+..+.. .....-+|++.|+-.|.+.+
T Consensus 384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~~g~Hff~P~~~~- 458 (715)
T PRK11730 384 TLDY-AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAK---ALKRPENFCGMHFFNPVHRM- 458 (715)
T ss_pred eCCH-HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCCccEEEEecCCccccc-
Confidence 2344 55799999999999888764 8999999999999886 788888777775 33334579999997777663
Q ss_pred HHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 246 ~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
. -.=|.++..++++.++.+.++++.+|..-+
T Consensus 459 ----~---------lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv 489 (715)
T PRK11730 459 ----P---------LVEVIRGEKTSDETIATVVAYASKMGKTPI 489 (715)
T ss_pred ----c---------eEEeeCCCCCCHHHHHHHHHHHHHhCCceE
Confidence 0 122678899999999999999999995533
No 110
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.67 E-value=4.5e-07 Score=87.56 Aligned_cols=152 Identities=14% Similarity=0.189 Sum_probs=110.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc----------ccHHHHHHCCceecC---------CCcCC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEEN---------GTLGD 171 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~----------~s~~~A~~~G~~~~~---------~t~~~ 171 (316)
|++++|||.|.||..+|..+... |++|.+.+.+.+ ++.+...+.|...++ ....+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~------G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~ 76 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALA------GYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTD 76 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhc------CCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCc
Confidence 48999999999999999988877 899888776522 222333333422111 00122
Q ss_pred HHhhhccCCEEEEcccCchHHH--HHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHH
Q 021218 172 IYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (316)
Q Consensus 172 ~~e~i~~ADIViLavp~~~~~~--vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf 248 (316)
.. .+++||+||=+++-+...+ ++.++-.+.+|+++|- ..+++.+..+.+ .....-+|++.|+--|.+.|
T Consensus 77 ~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~---~~~rper~iG~HFfNP~~~m---- 148 (307)
T COG1250 77 LA-ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAE---ALKRPERFIGLHFFNPVPLM---- 148 (307)
T ss_pred hh-HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHH---HhCCchhEEEEeccCCCCcc----
Confidence 22 7899999999999888754 8899999999999986 788888776665 22223469999996666663
Q ss_pred hcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCC
Q 021218 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (316)
Q Consensus 249 ~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~ 286 (316)
.-.=+.+...++++.++.+.+++..+|.
T Consensus 149 ----------~LVEvI~g~~T~~e~~~~~~~~~~~igK 176 (307)
T COG1250 149 ----------PLVEVIRGEKTSDETVERVVEFAKKIGK 176 (307)
T ss_pred ----------eeEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 1122677889999999999999999993
No 111
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.65 E-value=4.5e-07 Score=96.33 Aligned_cols=155 Identities=9% Similarity=0.068 Sum_probs=113.4
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CCc
Q 021218 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTL 169 (316)
Q Consensus 110 G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~t~ 169 (316)
.+++|+|||.|.||..+|..+... |++|++.+.+.+ ..+. ..+.|..... ...
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 384 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASK------GTPIVMKDINQH-SLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT 384 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe
Confidence 457999999999999999999998 999888776532 2211 1222211000 012
Q ss_pred CCHHhhhccCCEEEEcccCchHHH--HHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHH
Q 021218 170 GDIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (316)
Q Consensus 170 ~~~~e~i~~ADIViLavp~~~~~~--vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~ 246 (316)
.+. +.+++||+||=++|.+-..+ ++.++-+.++|+++|. .++++.+..+.. .....-+|++.|+=-|.+.+ .
T Consensus 385 ~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~---~~~~p~r~ig~Hff~P~~~~-~ 459 (714)
T TIGR02437 385 LSY-AGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAK---ALKRPENFCGMHFFNPVHRM-P 459 (714)
T ss_pred CCH-HHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEecCCCcccC-c
Confidence 344 45799999999999888764 8999999999999986 778888777775 33334579999997777663 0
Q ss_pred HHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 247 lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
-.=|.++..++++.++.+.+++..+|..-+
T Consensus 460 -------------lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv 489 (714)
T TIGR02437 460 -------------LVEVIRGEKSSDETIATVVAYASKMGKTPI 489 (714)
T ss_pred -------------eEeecCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 122678889999999999999999995443
No 112
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.64 E-value=4e-07 Score=97.04 Aligned_cols=155 Identities=11% Similarity=0.087 Sum_probs=113.0
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcc----------cHHHHHHCCceecC---------CCcC
Q 021218 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----------SFAEARAAGFTEEN---------GTLG 170 (316)
Q Consensus 110 G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~----------s~~~A~~~G~~~~~---------~t~~ 170 (316)
.|++|+|||.|.||..+|..+... |++|++.+.+.+. .++...+.|..... ....
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~------G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 407 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDK------GLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTL 407 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhC------CCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC
Confidence 347899999999999999999988 9998877655321 11112222211000 0123
Q ss_pred CHHhhhccCCEEEEcccCchHHH--HHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHH
Q 021218 171 DIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (316)
Q Consensus 171 ~~~e~i~~ADIViLavp~~~~~~--vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~l 247 (316)
+. +.+++||+||=++|.+...+ ++.++-+.++++++|. ..+++.+..+.. .....-+|++.|+=.|.+.|
T Consensus 408 ~~-~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~ig~Hff~P~~~m--- 480 (737)
T TIGR02441 408 DY-SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAA---VSSRPEKVIGMHYFSPVDKM--- 480 (737)
T ss_pred CH-HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCccceEEEeccCCcccC---
Confidence 44 46799999999999888764 8999999999999886 778888877775 22333579999997777663
Q ss_pred HhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCC
Q 021218 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 248 f~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~ 288 (316)
--.=|.++..++++.++.+.+++..+|..-
T Consensus 481 -----------~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~p 510 (737)
T TIGR02441 481 -----------QLLEIITHDGTSKDTLASAVAVGLKQGKVV 510 (737)
T ss_pred -----------ceEEEeCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 112267888999999999999999999543
No 113
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.64 E-value=5.9e-07 Score=95.25 Aligned_cols=155 Identities=12% Similarity=0.118 Sum_probs=111.7
Q ss_pred CCCEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEEecCCcccHHHH-----------HHCCceecC---------CC
Q 021218 110 GINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN---------GT 168 (316)
Q Consensus 110 G~kkIGIIG~G~mG~AlA~~Lr-~~~~~~g~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~~---------~t 168 (316)
.+++|+|||.|.||..+|..+. .. |++|.+.+.+.+ ..+.+ .+.|..... ..
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 375 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKA------GIPVRIKDINPQ-GINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG 375 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE
Confidence 3478999999999999999876 57 999888776532 22111 122211000 01
Q ss_pred cCCHHhhhccCCEEEEcccCchHHH--HHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhH
Q 021218 169 LGDIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (316)
Q Consensus 169 ~~~~~e~i~~ADIViLavp~~~~~~--vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r 245 (316)
..+. +.+++||+||=++|.+...+ ++.++-++++++++|. .++++.+..+.+ .....-+|++.|+-.|.+.+
T Consensus 376 ~~~~-~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~~g~HffnP~~~~- 450 (699)
T TIGR02440 376 TTDY-RGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAA---AASRPENVIGLHYFSPVEKM- 450 (699)
T ss_pred eCCh-HHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHH---hcCCcccEEEEecCCccccC-
Confidence 2344 56899999999999888754 8899999999999886 778888777775 22333579999997776653
Q ss_pred HHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 246 ~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
.-.=|.++..++++.++.+.++++.+|..-+
T Consensus 451 -------------~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv 481 (699)
T TIGR02440 451 -------------PLVEVIPHAGTSEQTIATTVALAKKQGKTPI 481 (699)
T ss_pred -------------ceEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 1122678889999999999999999995443
No 114
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.60 E-value=9.7e-07 Score=93.71 Aligned_cols=154 Identities=12% Similarity=0.132 Sum_probs=112.8
Q ss_pred CCEEEEEcccchHHHHHHHHH-hhhhhhcCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CCc
Q 021218 111 INQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTL 169 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr-~~~~~~g~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~t~ 169 (316)
+++|+|||.|.||..+|..+. .. |++|.+.+.+.+ ..+. ..+.|..... ...
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 381 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKA------GLPVRIKDINPQ-GINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT 381 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe
Confidence 589999999999999999887 77 999888775432 2222 1222211000 012
Q ss_pred CCHHhhhccCCEEEEcccCchHHH--HHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHH
Q 021218 170 GDIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (316)
Q Consensus 170 ~~~~e~i~~ADIViLavp~~~~~~--vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~ 246 (316)
.+. +.+++||+||=++|.+...+ ++.++-++++|+++|. .++++.+..+.+ .....-+|++.|+=.|.+.+
T Consensus 382 ~~~-~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~ig~Hff~P~~~~-- 455 (708)
T PRK11154 382 TDY-RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAA---AAARPEQVIGLHYFSPVEKM-- 455 (708)
T ss_pred CCh-HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hcCcccceEEEecCCccccC--
Confidence 344 56799999999999888754 8999999999999986 778888877775 22333579999997777653
Q ss_pred HHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 247 lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
--.=|.+++.++++.++.+.+++..+|..-+
T Consensus 456 ------------~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv 486 (708)
T PRK11154 456 ------------PLVEVIPHAKTSAETIATTVALAKKQGKTPI 486 (708)
T ss_pred ------------ceEEEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 1122788999999999999999999996544
No 115
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.57 E-value=1.1e-06 Score=87.92 Aligned_cols=93 Identities=23% Similarity=0.248 Sum_probs=74.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
..+.| ++++|+|+|.+|..+++.++.. |.+|++.++. +...+.|.+.|+.. .+.+++++.+|+||.+
T Consensus 198 ~~l~G-ktVvViG~G~IG~~va~~ak~~------Ga~ViV~d~d-~~R~~~A~~~G~~~-----~~~~e~v~~aDVVI~a 264 (413)
T cd00401 198 VMIAG-KVAVVAGYGDVGKGCAQSLRGQ------GARVIVTEVD-PICALQAAMEGYEV-----MTMEEAVKEGDIFVTT 264 (413)
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECC-hhhHHHHHhcCCEE-----ccHHHHHcCCCEEEEC
Confidence 35789 9999999999999999999999 9988775544 45567888899862 3567889999999998
Q ss_pred ccCchHHHHHH-HHHhcCCCCcEEEEeCCc
Q 021218 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 186 vp~~~~~~vi~-ei~~~mk~gaiLid~aGv 214 (316)
+... .+++ +.+..||+|.+|+.++.+
T Consensus 265 tG~~---~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 265 TGNK---DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred CCCH---HHHHHHHHhcCCCCcEEEEeCCC
Confidence 7643 4566 568899999999877643
No 116
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.57 E-value=3.2e-06 Score=80.86 Aligned_cols=157 Identities=20% Similarity=0.184 Sum_probs=98.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec--CCC-------cCCHHhhhccCCEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------LGDIYETISGSDLV 182 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~--~~t-------~~~~~e~i~~ADIV 182 (316)
|+|+|||.|.||..+|..|.+. |++|.+..|.. .+...+.|.... ++. ..+..+....+|+|
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~------g~~V~~~~r~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 76 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA------GFDVHFLLRSD---YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWV 76 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCC---HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEE
Confidence 7999999999999999999998 99988887754 233444554321 110 01122346789999
Q ss_pred EEcccCchHHHHHHHHHhcCCCCcEEE-EeCCch-hhhhhccccCCCCCccEEE------eccCCCchhhHHHHhcCccc
Q 021218 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQSMGLDFPKNIGVIA------VCPKGMGPSVRRLYVQGKEI 254 (316)
Q Consensus 183 iLavp~~~~~~vi~ei~~~mk~gaiLi-d~aGv~-l~~l~~~~~~~~~~i~vI~------vhPn~pg~~~r~lf~~G~e~ 254 (316)
|+|+|-.+..++++.+.+.++++.+|+ ..-|+. ...+.. .+|+. +++. .....|+... .
T Consensus 77 ilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~---~~~~~-~v~~g~~~~~a~~~~pg~v~---------~ 143 (313)
T PRK06249 77 LVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLRE---ILPAE-HLLGGLCFICSNRVGPGVIH---------H 143 (313)
T ss_pred EEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHH---HCCCC-cEEEEeeeEeEecCCCeEEE---------E
Confidence 999999988888999988898887665 556765 234443 44443 3333 3333444331 1
Q ss_pred cCCCceEEEeeccCCC-----HHHHHHHHHHHHHcCCCCeee
Q 021218 255 NGAGINSSFAVHQDVD-----GRATNVALGWSVALGSPFTFA 291 (316)
Q Consensus 255 ~G~G~~~iiap~~d~~-----~~a~e~a~~l~~alG~~~~~~ 291 (316)
.|.|... |.+....+ .+..+.+.++++..|......
T Consensus 144 ~~~g~~~-iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~ 184 (313)
T PRK06249 144 LAYGRVN-LGYHSGPAADDGITARVEEGAALFRAAGIDSQAM 184 (313)
T ss_pred CCCCcEE-EecCCCCcccchHHHHHHHHHHHHHhCCCCceeC
Confidence 2234333 44433322 456666778888888664443
No 117
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.55 E-value=1.9e-06 Score=86.46 Aligned_cols=94 Identities=15% Similarity=0.141 Sum_probs=63.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCcee--c----------CCCcCCHHhhhccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--E----------NGTLGDIYETISGS 179 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~--~----------~~t~~~~~e~i~~A 179 (316)
|+|||||+|.||..+|.++.+ +++|+..+++ +...+... .|... | .-...+..+++++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-------~~~V~g~D~~-~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~a 77 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-------SRQVVGFDVN-KKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKEC 77 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-------CCEEEEEeCC-HHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCC
Confidence 899999999999999999654 6777655544 43333332 44320 0 00123444578999
Q ss_pred CEEEEcccCch-------HHHHH---HHHHhcCCCCcEEEEeCCc
Q 021218 180 DLVLLLISDAA-------QADNY---EKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 180 DIViLavp~~~-------~~~vi---~ei~~~mk~gaiLid~aGv 214 (316)
|++|+|+|... ...++ +.+.+++++|++|++.+.+
T Consensus 78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv 122 (425)
T PRK15182 78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTV 122 (425)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 99999999651 12333 4788999999999887644
No 118
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.52 E-value=5.1e-07 Score=86.39 Aligned_cols=95 Identities=22% Similarity=0.355 Sum_probs=74.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
..+.| ++++|||+|.+|..+++.|+.. |.+|.+.+++.. ..+.+...|+... ...++.+.++++|+||.+
T Consensus 148 ~~l~g-~kvlViG~G~iG~~~a~~L~~~------Ga~V~v~~r~~~-~~~~~~~~G~~~~--~~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 148 ITIHG-SNVLVLGFGRTGMTLARTLKAL------GANVTVGARKSA-HLARITEMGLSPF--HLSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHcCCeee--cHHHHHHHhCCCCEEEEC
Confidence 56789 9999999999999999999998 988888877643 3556667776521 123567889999999999
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
+|+.. +-++.++.|+++++|+|++.
T Consensus 218 ~p~~~---i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 218 IPALV---LTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred CChhh---hhHHHHHcCCCCcEEEEEcc
Confidence 98632 22467788999999998863
No 119
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.50 E-value=1.3e-06 Score=81.80 Aligned_cols=146 Identities=23% Similarity=0.247 Sum_probs=104.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh---hccCCEEEEcccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET---ISGSDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~---i~~ADIViLavp~ 188 (316)
|+||.||+|.||..+.+++.+. |++| ++++.++.+.+.+...|... ..+++|. +...-+|-|.+|-
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~------ghdv-V~yD~n~~av~~~~~~ga~~----a~sl~el~~~L~~pr~vWlMvPa 69 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG------GHDV-VGYDVNQTAVEELKDEGATG----AASLDELVAKLSAPRIVWLMVPA 69 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC------CCeE-EEEcCCHHHHHHHHhcCCcc----ccCHHHHHHhcCCCcEEEEEccC
Confidence 6899999999999999999999 9885 55666677888888888663 3455554 4567899999999
Q ss_pred chHHH-HHHHHHhcCCCCcEEEEeCCch----hhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEE
Q 021218 189 AAQAD-NYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (316)
Q Consensus 189 ~~~~~-vi~ei~~~mk~gaiLid~aGv~----l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~ii 263 (316)
..+++ +++++.++|.+|.+|||-.--. +...+. ...++++|+-+=-++ | .+|.-.-+.+
T Consensus 70 g~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~---l~~kgi~flD~GTSG-G------------~~G~~~G~~l 133 (300)
T COG1023 70 GDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKL---LAEKGIHFLDVGTSG-G------------VWGAERGYCL 133 (300)
T ss_pred CCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHH---HHhcCCeEEeccCCC-C------------chhhhcCceE
Confidence 96665 9999999999999999976432 222221 335688888654432 1 1111122334
Q ss_pred eeccCCCHHHHHHHHHHHHHcCC
Q 021218 264 AVHQDVDGRATNVALGWSVALGS 286 (316)
Q Consensus 264 ap~~d~~~~a~e~a~~l~~alG~ 286 (316)
-+.. ++++++.++-+|+++--
T Consensus 134 MiGG--~~~a~~~~~pif~~lA~ 154 (300)
T COG1023 134 MIGG--DEEAVERLEPIFKALAP 154 (300)
T ss_pred EecC--cHHHHHHHHHHHHhhCc
Confidence 5554 66899999999998754
No 120
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.46 E-value=1.1e-06 Score=87.91 Aligned_cols=92 Identities=23% Similarity=0.235 Sum_probs=74.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
.++| ++++|||+|.+|..+|+.++.. |.+|++.++... ....+...|+. ..+++++++++|+||.++
T Consensus 192 ~l~G-k~VvViG~G~IG~~vA~~ak~~------Ga~ViV~d~dp~-r~~~A~~~G~~-----v~~leeal~~aDVVItaT 258 (406)
T TIGR00936 192 LIAG-KTVVVAGYGWCGKGIAMRARGM------GARVIVTEVDPI-RALEAAMDGFR-----VMTMEEAAKIGDIFITAT 258 (406)
T ss_pred CCCc-CEEEEECCCHHHHHHHHHHhhC------cCEEEEEeCChh-hHHHHHhcCCE-----eCCHHHHHhcCCEEEECC
Confidence 4789 9999999999999999999999 999888765543 34566777876 346788999999999887
Q ss_pred cCchHHHHHH-HHHhcCCCCcEEEEeCCc
Q 021218 187 SDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 187 p~~~~~~vi~-ei~~~mk~gaiLid~aGv 214 (316)
.. ..+++ +.+..||+|++|+.++.+
T Consensus 259 G~---~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 259 GN---KDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred CC---HHHHHHHHHhcCCCCcEEEEECCC
Confidence 63 45676 588999999999877654
No 121
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.42 E-value=1.3e-06 Score=87.86 Aligned_cols=93 Identities=24% Similarity=0.235 Sum_probs=74.6
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
.+.| ++++|||+|.+|..+|+.++.. |.+|++.++...+ ...+...|+. ..+++++++++|+||.++
T Consensus 209 ~l~G-k~VlViG~G~IG~~vA~~lr~~------Ga~ViV~d~dp~r-a~~A~~~G~~-----v~~l~eal~~aDVVI~aT 275 (425)
T PRK05476 209 LIAG-KVVVVAGYGDVGKGCAQRLRGL------GARVIVTEVDPIC-ALQAAMDGFR-----VMTMEEAAELGDIFVTAT 275 (425)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCchh-hHHHHhcCCE-----ecCHHHHHhCCCEEEECC
Confidence 4789 9999999999999999999999 9998887765443 3455566775 347889999999999987
Q ss_pred cCchHHHHHH-HHHhcCCCCcEEEEeCCch
Q 021218 187 SDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 187 p~~~~~~vi~-ei~~~mk~gaiLid~aGv~ 215 (316)
.. ..+++ +.+..||+|++++.++.+.
T Consensus 276 G~---~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 276 GN---KDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred CC---HHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 53 34676 7889999999999877654
No 122
>PLN02494 adenosylhomocysteinase
Probab=98.40 E-value=1.6e-06 Score=88.05 Aligned_cols=91 Identities=18% Similarity=0.182 Sum_probs=72.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
.+.| ++++|+|+|.+|..+|+.++.+ |++|++.++... ....+...|+.. .+++++++++|+|+.++
T Consensus 251 ~LaG-KtVvViGyG~IGr~vA~~aka~------Ga~VIV~e~dp~-r~~eA~~~G~~v-----v~leEal~~ADVVI~tT 317 (477)
T PLN02494 251 MIAG-KVAVICGYGDVGKGCAAAMKAA------GARVIVTEIDPI-CALQALMEGYQV-----LTLEDVVSEADIFVTTT 317 (477)
T ss_pred ccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCch-hhHHHHhcCCee-----ccHHHHHhhCCEEEECC
Confidence 4789 9999999999999999999999 998877665533 234667778762 36889999999999865
Q ss_pred cCchHHHHH-HHHHhcCCCCcEEEEeCC
Q 021218 187 SDAAQADNY-EKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 187 p~~~~~~vi-~ei~~~mk~gaiLid~aG 213 (316)
... .++ .+.++.||+|++|+.++.
T Consensus 318 Gt~---~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 318 GNK---DIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred CCc---cchHHHHHhcCCCCCEEEEcCC
Confidence 532 444 578889999999997754
No 123
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.39 E-value=3.4e-06 Score=82.05 Aligned_cols=150 Identities=18% Similarity=0.222 Sum_probs=96.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH------C-CceecC--CCcCCHHhhhccCCE
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA------A-GFTEEN--GTLGDIYETISGSDL 181 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~------~-G~~~~~--~t~~~~~e~i~~ADI 181 (316)
+++|+|||.|+-|.++|+-|.+. |++|.++.|+.+-..+.-.. . |+...+ ....|+.+++++||+
T Consensus 1 ~~kI~ViGaGswGTALA~~la~n------g~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~ 74 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARN------GHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADI 74 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhc------CCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCE
Confidence 48999999999999999999999 88888877653211111100 0 111100 124689999999999
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEE-EeCCch-------hhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCcc
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLi-d~aGv~-------l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e 253 (316)
|++++|-+...++++++.+++++++.++ .+-|+. -+.+++ .+|.+.-.+-.=||-... -.
T Consensus 75 iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e---~l~~~~~~vLSGPs~A~E-----Va---- 142 (329)
T COG0240 75 IVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEE---ELPDNPIAVLSGPSFAKE-----VA---- 142 (329)
T ss_pred EEEECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHH---HcCCCeEEEEECccHHHH-----Hh----
Confidence 9999999999999999988898888766 555653 223443 445443334455544222 22
Q ss_pred ccCCCceEEEeeccCCCHHHHHHHHHHHH
Q 021218 254 INGAGINSSFAVHQDVDGRATNVALGWSV 282 (316)
Q Consensus 254 ~~G~G~~~iiap~~d~~~~a~e~a~~l~~ 282 (316)
.|.++.++..- .+.+..+.+..++.
T Consensus 143 ---~g~pta~~vas-~d~~~a~~v~~~f~ 167 (329)
T COG0240 143 ---QGLPTAVVVAS-NDQEAAEKVQALFS 167 (329)
T ss_pred ---cCCCcEEEEec-CCHHHHHHHHHHhC
Confidence 34677566654 33444444444443
No 124
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.39 E-value=1.2e-06 Score=86.38 Aligned_cols=98 Identities=17% Similarity=0.247 Sum_probs=70.6
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC-------cEEEEEecCCcc---c-HHHHHHC--------CceecC--CCcC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-------IVVKVGLRKGSR---S-FAEARAA--------GFTEEN--GTLG 170 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G-------~~Vivg~r~~~~---s-~~~A~~~--------G~~~~~--~t~~ 170 (316)
++|+|||.|++|.++|..|.+. + ++|.++.|+... . .+.-.+. |+...+ ....
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n------~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~ts 85 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGEN------TQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVS 85 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEec
Confidence 6999999999999999999887 5 677777666421 1 1111111 111000 0135
Q ss_pred CHHhhhccCCEEEEcccCchHHHHHHHHHh--cCCCCcEEE-EeCCch
Q 021218 171 DIYETISGSDLVLLLISDAAQADNYEKIFS--CMKPNSILG-LSHGFL 215 (316)
Q Consensus 171 ~~~e~i~~ADIViLavp~~~~~~vi~ei~~--~mk~gaiLi-d~aGv~ 215 (316)
|+++++++||+|++++|++...++++++.+ +++++++++ .+.|+.
T Consensus 86 dl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe 133 (365)
T PTZ00345 86 DLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGII 133 (365)
T ss_pred CHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcc
Confidence 788899999999999999999999999988 888776544 777874
No 125
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.37 E-value=2.1e-06 Score=84.09 Aligned_cols=97 Identities=20% Similarity=0.296 Sum_probs=70.9
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCC--------cEEEEEecCC---cccHHHHHH---------CCceecC--CCcC
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD--------IVVKVGLRKG---SRSFAEARA---------AGFTEEN--GTLG 170 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G--------~~Vivg~r~~---~~s~~~A~~---------~G~~~~~--~t~~ 170 (316)
+|+|||.|+.|.++|..|.+. | ++|.++.|+. ......... .|+...+ ....
T Consensus 1 kI~VIGaG~wGtALA~~la~n------g~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~ 74 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN------ARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVP 74 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEEC
Confidence 589999999999999999887 6 7888887632 111111111 1221000 0135
Q ss_pred CHHhhhccCCEEEEcccCchHHHHHHHHHhcCCCCcEEE-EeCCch
Q 021218 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL 215 (316)
Q Consensus 171 ~~~e~i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLi-d~aGv~ 215 (316)
|+++++++||+|++++|++.+.++++++.++++++++++ .+.|+.
T Consensus 75 dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie 120 (342)
T TIGR03376 75 DLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLE 120 (342)
T ss_pred CHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcc
Confidence 788999999999999999999999999999999888654 677764
No 126
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.36 E-value=1.2e-06 Score=84.35 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=62.2
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| |+|+|||.| .||..+|..|.+. |..|.+..++. .++.+++++||+||+
T Consensus 155 i~l~G-k~V~vIG~s~ivG~PmA~~L~~~------gatVtv~~~~t-------------------~~l~e~~~~ADIVIs 208 (301)
T PRK14194 155 GDLTG-KHAVVIGRSNIVGKPMAALLLQA------HCSVTVVHSRS-------------------TDAKALCRQADIVVA 208 (301)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEE
Confidence 48899 999999996 9999999999998 99888775542 257788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+++.... +.+. ++|+|++|+|++
T Consensus 209 avg~~~~---v~~~--~ik~GaiVIDvg 231 (301)
T PRK14194 209 AVGRPRL---IDAD--WLKPGAVVIDVG 231 (301)
T ss_pred ecCChhc---ccHh--hccCCcEEEEec
Confidence 9997653 3221 289999999985
No 127
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.34 E-value=2.4e-06 Score=80.46 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=58.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccH-HHHHHCCceecCCCcCCHHhhhccCCEEEEcccCc
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~-~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~ 189 (316)
|++|||||+|.||..+++.+.+. +.++++....+++.... +.+...|... +.+.++++.++|+|++|+|++
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~----~~~~elv~v~d~~~~~a~~~a~~~~~~~----~~~~~ell~~~DvVvi~a~~~ 72 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSG----RINAELYAFYDRNLEKAENLASKTGAKA----CLSIDELVEDVDLVVECASVN 72 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcC----CCCeEEEEEECCCHHHHHHHHHhcCCee----ECCHHHHhcCCCEEEEcCChH
Confidence 57999999999999999999875 11355444444443333 3334444432 468888889999999999999
Q ss_pred hHHHHHHHHHh
Q 021218 190 AQADNYEKIFS 200 (316)
Q Consensus 190 ~~~~vi~ei~~ 200 (316)
...++..+.+.
T Consensus 73 ~~~~~~~~al~ 83 (265)
T PRK13304 73 AVEEVVPKSLE 83 (265)
T ss_pred HHHHHHHHHHH
Confidence 88887776654
No 128
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.29 E-value=3.9e-06 Score=79.39 Aligned_cols=92 Identities=16% Similarity=0.177 Sum_probs=63.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC-cccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
++|||||+|.||..+++.|.+.. .++++....+++ ++..+.+.+.|... ...+.+++++++|+|++|+|+..
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~----~~~el~aV~dr~~~~a~~~a~~~g~~~---~~~~~eell~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGL----PGLTLSAVAVRDPQRHADFIWGLRRPP---PVVPLDQLATHADIVVEAAPASV 79 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcC----CCeEEEEEECCCHHHHHHHHHhcCCCc---ccCCHHHHhcCCCEEEECCCcHH
Confidence 78999999999999999998620 156665344433 33334455555321 14588999999999999999998
Q ss_pred HHHHHHHHHhcCCCCc-EEEEeCC
Q 021218 191 QADNYEKIFSCMKPNS-ILGLSHG 213 (316)
Q Consensus 191 ~~~vi~ei~~~mk~ga-iLid~aG 213 (316)
+.++..+.+. .|+ +++...|
T Consensus 80 h~e~~~~aL~---aGk~Vi~~s~g 100 (271)
T PRK13302 80 LRAIVEPVLA---AGKKAIVLSVG 100 (271)
T ss_pred HHHHHHHHHH---cCCcEEEecch
Confidence 8777766543 455 4444433
No 129
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.26 E-value=6.9e-06 Score=83.38 Aligned_cols=138 Identities=15% Similarity=0.091 Sum_probs=94.7
Q ss_pred hHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC----CceecCCCcCCHHhhhcc---CCEEEEcccCchHHH-
Q 021218 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISG---SDLVLLLISDAAQAD- 193 (316)
Q Consensus 122 mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~----G~~~~~~t~~~~~e~i~~---ADIViLavp~~~~~~- 193 (316)
||..||++|.+. |++|.+++|..++..+..... |+.. ..+++|+++. +|+|++++|....++
T Consensus 1 MG~~mA~nL~~~------G~~V~v~nrt~~~~~~l~~~~g~~~g~~~----~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~ 70 (459)
T PRK09287 1 MGKNLALNIASH------GYTVAVYNRTPEKTDEFLAEEGKGKKIVP----AYTLEEFVASLEKPRKILLMVKAGAPVDA 70 (459)
T ss_pred CcHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhCCCCCeEe----eCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence 899999999999 999998888765554444322 3543 5688888874 899999999998775
Q ss_pred HHHHHHhcCCCCcEEEEeCCchhh---hhhccccCCCCCccEEEecc-CCCchhhHHHHhcCccccCCCceEEEeeccCC
Q 021218 194 NYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCP-KGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (316)
Q Consensus 194 vi~ei~~~mk~gaiLid~aGv~l~---~l~~~~~~~~~~i~vI~vhP-n~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~ 269 (316)
+++++++++.+|.+|+|.+-.... .... ..-.+++.||. +| .+ +.. .-+ .|. + +.+..
T Consensus 71 Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~--~l~~~Gi~fvd-apVSG-G~~---gA~-------~G~-s-iM~GG-- 132 (459)
T PRK09287 71 VIEQLLPLLEKGDIIIDGGNSNYKDTIRREK--ELAEKGIHFIG-MGVSG-GEE---GAL-------HGP-S-IMPGG-- 132 (459)
T ss_pred HHHHHHhcCCCCCEEEECCCCCHHHHHHHHH--HHHhcCCeEEe-cCCCC-CHH---HHh-------cCC-E-EEEeC--
Confidence 889999999999999998743211 1111 01134677664 34 22 111 111 233 4 55665
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 021218 270 DGRATNVALGWSVALGSP 287 (316)
Q Consensus 270 ~~~a~e~a~~l~~alG~~ 287 (316)
++++.+.++-+++.+|.+
T Consensus 133 ~~~a~~~~~piL~~ia~~ 150 (459)
T PRK09287 133 QKEAYELVAPILEKIAAK 150 (459)
T ss_pred CHHHHHHHHHHHHHHhhh
Confidence 458999999999999964
No 130
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.24 E-value=1.9e-05 Score=80.40 Aligned_cols=166 Identities=16% Similarity=0.095 Sum_probs=95.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCcee--c-----------CC---CcCCHHh
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--E-----------NG---TLGDIYE 174 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~--~-----------~~---t~~~~~e 174 (316)
||+|+|||+|.+|..+|..|.+. |.|++|+..+ .++...+. .+.|... + .+ ...+..+
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~----g~g~~V~gvD-~~~~~v~~-l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~ 74 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALK----CPDIEVVVVD-ISVPRIDA-WNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEK 74 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc----CCCCeEEEEE-CCHHHHHH-HHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHH
Confidence 58999999999999999998876 3346665554 33332322 1111100 0 00 1245677
Q ss_pred hhccCCEEEEccc-Cc--------------hHHHHHHHHHhcCCCCcEEEEeC----Cchhh---hhhccccCCCCCcc-
Q 021218 175 TISGSDLVLLLIS-DA--------------AQADNYEKIFSCMKPNSILGLSH----GFLLG---HLQSMGLDFPKNIG- 231 (316)
Q Consensus 175 ~i~~ADIViLavp-~~--------------~~~~vi~ei~~~mk~gaiLid~a----Gv~l~---~l~~~~~~~~~~i~- 231 (316)
++++||++|+|+| |. .+...++++.++++++++|+.-+ |..-. .+.+ . ..+.+
T Consensus 75 ~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~---~-~~g~~f 150 (473)
T PLN02353 75 HVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTH---N-SKGINF 150 (473)
T ss_pred HHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHh---h-CCCCCe
Confidence 8999999999986 22 12346668999999999887544 33211 1221 1 11233
Q ss_pred EEEecc--CCCchhhHHHHhcCccccCCCceEEE-eec-cCCCHHHHHHHHHHHHHcCC-CCeeecChh
Q 021218 232 VIAVCP--KGMGPSVRRLYVQGKEINGAGINSSF-AVH-QDVDGRATNVALGWSVALGS-PFTFATTLE 295 (316)
Q Consensus 232 vI~vhP--n~pg~~~r~lf~~G~e~~G~G~~~ii-ap~-~d~~~~a~e~a~~l~~alG~-~~~~~tT~~ 295 (316)
.|...| -.||..+++++. .+-++ .-. .+..+++.+.++++...+-. ..+..|+++
T Consensus 151 ~v~~~PErl~~G~a~~d~~~---------p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~ 210 (473)
T PLN02353 151 QILSNPEFLAEGTAIEDLFK---------PDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLW 210 (473)
T ss_pred EEEECCCccCCCCcccccCC---------CCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHH
Confidence 356667 334555444333 23333 222 22335678888888887742 345566665
No 131
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.20 E-value=5.8e-06 Score=79.48 Aligned_cols=97 Identities=19% Similarity=0.213 Sum_probs=70.5
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
.+.| ++|+|||.|.||..+++.++.. | .+|++.+|..++..+.+.+.|.... ...+..+.+.++|+||.+
T Consensus 175 ~l~~-~~V~ViGaG~iG~~~a~~L~~~------g~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVi~a 245 (311)
T cd05213 175 NLKG-KKVLVIGAGEMGELAAKHLAAK------GVAEITIANRTYERAEELAKELGGNAV--PLDELLELLNEADVVISA 245 (311)
T ss_pred CccC-CEEEEECcHHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHcCCeEE--eHHHHHHHHhcCCEEEEC
Confidence 3789 9999999999999999999986 5 4677777765555667777765321 123466788999999999
Q ss_pred ccCchHHHHHHHHHhcC-CCCcEEEEeC
Q 021218 186 ISDAAQADNYEKIFSCM-KPNSILGLSH 212 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~m-k~gaiLid~a 212 (316)
++.....+++.+..... +++.+++|.+
T Consensus 246 t~~~~~~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 246 TGAPHYAKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred CCCCchHHHHHHHHhhCCCCCeEEEEeC
Confidence 99877744555544333 3566778776
No 132
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.17 E-value=7.9e-06 Score=81.17 Aligned_cols=93 Identities=12% Similarity=0.097 Sum_probs=62.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH----------------CCceecCCCcCCHHhh
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----------------AGFTEENGTLGDIYET 175 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~----------------~G~~~~~~t~~~~~e~ 175 (316)
|+|+|||+|.||..+|..+ +. |++|+..+++ +...+...+ .+.... ...+..++
T Consensus 1 mkI~VIGlGyvGl~~A~~l-A~------G~~VigvD~d-~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~--~t~~~~~~ 70 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLI-AQ------NHEVVALDIL-PSRVAMLNDRISPIVDKEIQQFLQSDKIHFN--ATLDKNEA 70 (388)
T ss_pred CEEEEECCCHHHHHHHHHH-Hh------CCcEEEEECC-HHHHHHHHcCCCCCCCcCHHHHHHhCCCcEE--Eecchhhh
Confidence 5899999999999999655 46 8887766554 333333322 111100 12346678
Q ss_pred hccCCEEEEcccCc----------hH-HHHHHHHHhcCCCCcEEEEeCCch
Q 021218 176 ISGSDLVLLLISDA----------AQ-ADNYEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 176 i~~ADIViLavp~~----------~~-~~vi~ei~~~mk~gaiLid~aGv~ 215 (316)
+++||+|++|+|.. .. .++++++.. +++|++|++.+-+.
T Consensus 71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~ 120 (388)
T PRK15057 71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVP 120 (388)
T ss_pred hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecC
Confidence 89999999999965 22 346677777 69999988766543
No 133
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.16 E-value=6e-06 Score=79.50 Aligned_cols=75 Identities=17% Similarity=0.184 Sum_probs=61.4
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 107 ~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
+++| |+|+||| .|.||..+|+.|.+. |+.|.++..+. .++++++++||+|+.+
T Consensus 155 ~~~G-k~V~viGrs~~mG~PmA~~L~~~------g~tVtv~~~rT-------------------~~l~e~~~~ADIVIsa 208 (296)
T PRK14188 155 DLSG-LNAVVIGRSNLVGKPMAQLLLAA------NATVTIAHSRT-------------------RDLPAVCRRADILVAA 208 (296)
T ss_pred CCCC-CEEEEEcCCcchHHHHHHHHHhC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEEe
Confidence 7899 9999999 999999999999998 99888774321 1457889999999999
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.... +++. ++++|++|+|++
T Consensus 209 vg~~~~---v~~~--~lk~GavVIDvG 230 (296)
T PRK14188 209 VGRPEM---VKGD--WIKPGATVIDVG 230 (296)
T ss_pred cCChhh---cchh--eecCCCEEEEcC
Confidence 998663 3322 289999999985
No 134
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.14 E-value=2.5e-05 Score=74.03 Aligned_cols=157 Identities=15% Similarity=0.212 Sum_probs=106.1
Q ss_pred CCEEEEEcccch--------------------HHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHHHHHHCCceecC
Q 021218 111 INQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEEN 166 (316)
Q Consensus 111 ~kkIGIIG~G~m--------------------G~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~~A~~~G~~~~~ 166 (316)
|+|+.|.|.||+ |..||..+... |++|++.+.+. +..++.-+..|+..
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA------GHDVVLaePn~d~~dd~~w~~vedAGV~v-- 72 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA------GHDVVLAEPNRDIMDDEHWKRVEDAGVEV-- 72 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc------CCcEEeecCCccccCHHHHHHHHhcCcEE--
Confidence 467778887776 45566665555 88888876542 24477888899875
Q ss_pred CCcCCHHhhhccCCEEEEcccCchHH-HHHHHHHhcCCCCcEEEEeCCch----hhhhhccccC-CCCCccEEEeccCC-
Q 021218 167 GTLGDIYETISGSDLVLLLISDAAQA-DNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLD-FPKNIGVIAVCPKG- 239 (316)
Q Consensus 167 ~t~~~~~e~i~~ADIViLavp~~~~~-~vi~ei~~~mk~gaiLid~aGv~----l~~l~~~~~~-~~~~i~vI~vhPn~- 239 (316)
+.|..++++.+++.+|-+|-...+ .+.++|.+++..|++|...+-++ ...++. .+. .++++.+-..||-+
T Consensus 73 --v~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~-~Lr~kR~dVGvssmHPAgv 149 (340)
T COG4007 73 --VSDDAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEG-ELRTKREDVGVSSMHPAGV 149 (340)
T ss_pred --ecCchhhhhcceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhh-hhcCchhhcCccccCCCCC
Confidence 557778999999999999999555 67889999999999998655443 222332 223 23677777788843
Q ss_pred CchhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCC
Q 021218 240 MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (316)
Q Consensus 240 pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~ 286 (316)
||....+.|.-+ |.+. .-.+-.+++.+++..+++++.|.
T Consensus 150 PGtp~h~~yvia------gr~t--~g~elATeEQi~r~velaes~Gk 188 (340)
T COG4007 150 PGTPQHGHYVIA------GRST--EGKELATEEQIERCVELAESTGK 188 (340)
T ss_pred CCCCCCceEEEe------ccCC--CceeeccHHHHHHHHHHHHhcCC
Confidence 454432222221 1111 11235778999999999999994
No 135
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=98.11 E-value=0.0001 Score=71.10 Aligned_cols=156 Identities=18% Similarity=0.219 Sum_probs=99.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCC--------cCCHHhhhccCCEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT--------LGDIYETISGSDLVL 183 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t--------~~~~~e~i~~ADIVi 183 (316)
|||.|+|.|.||.-++..|.+. |.+|.+..|.. . .+.-++.|....+.. ..+..+....+|+||
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~------g~~V~~~~R~~-~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlvi 72 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA------GHDVTLLVRSR-R-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVI 72 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC------CCeEEEEecHH-H-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEE
Confidence 6899999999999999999998 86666666653 2 455556676543211 112335667899999
Q ss_pred EcccCchHHHHHHHHHhcCCCCcEEE-EeCCch-hhhhhccccCCCCCccEEEecc-----CCCchhhHHHHhcCccccC
Q 021218 184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQSMGLDFPKNIGVIAVCP-----KGMGPSVRRLYVQGKEING 256 (316)
Q Consensus 184 Lavp~~~~~~vi~ei~~~mk~gaiLi-d~aGv~-l~~l~~~~~~~~~~i~vI~vhP-----n~pg~~~r~lf~~G~e~~G 256 (316)
++++-.+..+.++.+.+.+++++.|+ .--|+. .+.+.. .++...-+.++.+ .+|+... ..|
T Consensus 73 v~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~---~~~~~~il~G~~~~~a~~~~~g~v~---------~~g 140 (307)
T COG1893 73 VTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRK---ILPKETVLGGVTTHGAVREGPGHVV---------HTG 140 (307)
T ss_pred EEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHH---hCCcceEEEEEeeeeeEecCCceEE---------Eec
Confidence 99999999999999999999998655 556775 334554 5555422223333 2333331 122
Q ss_pred CCceEEEeeccCCCHHHHHHHHHHHHHcCCCC
Q 021218 257 AGINSSFAVHQDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 257 ~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~ 288 (316)
.|... +-+......+..+.+.+.++..|...
T Consensus 141 ~g~~~-ig~~~~~~~~~~~~i~~~~~~a~~~~ 171 (307)
T COG1893 141 LGDTV-IGELRGGRDELVKALAELFKEAGLEV 171 (307)
T ss_pred CCcEE-EccCCCCchHHHHHHHHHHHhCCCCe
Confidence 34444 44433333355666666667766543
No 136
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.09 E-value=9.4e-06 Score=72.77 Aligned_cols=95 Identities=24% Similarity=0.347 Sum_probs=59.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCcee--cC------------C---CcCCHHh
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--EN------------G---TLGDIYE 174 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~--~~------------~---t~~~~~e 174 (316)
|||+|||+|-+|..+|..+.+. |++|+ +.+.+++..+ ....|... |. + ...+..+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~------G~~V~-g~D~~~~~v~-~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ 72 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK------GHQVI-GVDIDEEKVE-ALNNGELPIYEPGLDELLKENVSAGRLRATTDIEE 72 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT------TSEEE-EE-S-HHHHH-HHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHH
T ss_pred CEEEEECCCcchHHHHHHHHhC------CCEEE-EEeCChHHHH-HHhhccccccccchhhhhccccccccchhhhhhhh
Confidence 7999999999999999999999 99865 5555443332 22333210 00 0 1356788
Q ss_pred hhccCCEEEEcccCch----------HHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 175 TISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 175 ~i~~ADIViLavp~~~----------~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
++++||++++|+|-.. ....++++.++++++++|+.-+-+
T Consensus 73 ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STv 122 (185)
T PF03721_consen 73 AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTV 122 (185)
T ss_dssp HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSS
T ss_pred hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEE
Confidence 8999999999997321 334677899999999998875543
No 137
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.08 E-value=1.3e-05 Score=66.22 Aligned_cols=96 Identities=14% Similarity=0.071 Sum_probs=60.1
Q ss_pred EEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEE-ecCCcccHHHHHHCC-ceec-CCCcCCHHhh-hccCCEEEEccc
Q 021218 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAG-FTEE-NGTLGDIYET-ISGSDLVLLLIS 187 (316)
Q Consensus 113 kIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg-~r~~~~s~~~A~~~G-~~~~-~~t~~~~~e~-i~~ADIViLavp 187 (316)
+|+||| .|.+|..++..+.+. .++++... .++.+.....+...+ +... .... +.++. ..++|+|++|+|
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-----~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~DvV~~~~~ 74 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-----PDFEVVALAASARSAGKRVSEAGPHLKGEVVLEL-EPEDFEELAVDIVFLALP 74 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-----CCceEEEEEechhhcCcCHHHHCccccccccccc-ccCChhhcCCCEEEEcCC
Confidence 589999 599999999988874 14554333 222211111222222 1100 0001 11111 258999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
+..+.+++..+...+++|++++|+++.
T Consensus 75 ~~~~~~~~~~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 75 HGVSKEIAPLLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred cHHHHHHHHHHHhhhcCCCEEEECCcc
Confidence 999999887666778999999999985
No 138
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.07 E-value=0.00013 Score=70.55 Aligned_cols=145 Identities=12% Similarity=0.050 Sum_probs=101.4
Q ss_pred hHHHHHHHHHhhhhhhcCCcEEEEEecCCcc------cH-----------HHHHHCCceecC---------CCcC--CHH
Q 021218 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR------SF-----------AEARAAGFTEEN---------GTLG--DIY 173 (316)
Q Consensus 122 mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~------s~-----------~~A~~~G~~~~~---------~t~~--~~~ 173 (316)
||..+|..+... |++|.+.+...+. .. +...+.|...+. .... +..
T Consensus 1 MG~giA~~~a~~------G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 74 (314)
T PRK08269 1 MGQGIALAFAFA------GHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAA 74 (314)
T ss_pred CcHHHHHHHHhC------CCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchH
Confidence 789999998888 9999888776521 11 122233322100 0011 256
Q ss_pred hhhccCCEEEEcccCchHHH--HHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhc
Q 021218 174 ETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQ 250 (316)
Q Consensus 174 e~i~~ADIViLavp~~~~~~--vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~ 250 (316)
+++++||+||-++|.+...+ ++.++.+.++++++|. .++++.+..+.. .....-++++.|+--|.+.+
T Consensus 75 ~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~---~~~~p~r~~g~Hf~~Pp~~~------ 145 (314)
T PRK08269 75 DALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQR---HVAHPERFLNAHWLNPAYLM------ 145 (314)
T ss_pred HHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHh---hcCCcccEEEEecCCccccC------
Confidence 78899999999999998865 7789999999999885 566777766665 22233479999996666553
Q ss_pred CccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCe
Q 021218 251 GKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (316)
Q Consensus 251 G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~ 289 (316)
--.=+.+...++++.++.+..++..+|..-+
T Consensus 146 --------~lvEVv~g~~t~~e~~~~~~~ll~~lGk~~v 176 (314)
T PRK08269 146 --------PLVEVSPSDATDPAVVDRLAALLERIGKVPV 176 (314)
T ss_pred --------ceEEEeCCCCCCHHHHHHHHHHHHHcCCcEE
Confidence 0122667889999999999999999996533
No 139
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.06 E-value=9e-06 Score=73.62 Aligned_cols=92 Identities=18% Similarity=0.151 Sum_probs=59.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc-cCCEEE
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVL 183 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~-~ADIVi 183 (316)
..+++| |+|+|+|+|+||..+|+.|.+. |++|++.+++.++..+.+...|... .+.+++.. ++|+++
T Consensus 23 ~~~l~g-k~v~I~G~G~vG~~~A~~L~~~------G~~Vvv~D~~~~~~~~~~~~~g~~~-----v~~~~l~~~~~Dv~v 90 (200)
T cd01075 23 TDSLEG-KTVAVQGLGKVGYKLAEHLLEE------GAKLIVADINEEAVARAAELFGATV-----VAPEEIYSVDADVFA 90 (200)
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHcCCEE-----EcchhhccccCCEEE
Confidence 467899 9999999999999999999999 9998866554333233333435442 23455554 899999
Q ss_pred EcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 184 Lavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
.|..-..+.+ +..+.|+. .+|+..+
T Consensus 91 p~A~~~~I~~---~~~~~l~~-~~v~~~A 115 (200)
T cd01075 91 PCALGGVIND---DTIPQLKA-KAIAGAA 115 (200)
T ss_pred ecccccccCH---HHHHHcCC-CEEEECC
Confidence 7766443222 33344543 4555443
No 140
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=98.05 E-value=6.3e-05 Score=71.99 Aligned_cols=103 Identities=20% Similarity=0.236 Sum_probs=71.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHH-HCCceec-CCC--c----CCHHhhhccCCEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEE-NGT--L----GDIYETISGSDLVL 183 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~-~~G~~~~-~~t--~----~~~~e~i~~ADIVi 183 (316)
|+|+|||.|.||+-+|..|.+. |.+|.+..|..+ ..+.-+ +.|+... ++. . ....+.....|+||
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~------G~~V~lv~r~~~-~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~vi 75 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA------GLPVRLILRDRQ-RLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLL 75 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC------CCCeEEEEechH-HHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEE
Confidence 7899999999999999999998 888887777532 222222 2354321 111 0 01112245789999
Q ss_pred EcccCchHHHHHHHHHhcCCCCcEEE-EeCCch-hhhhhc
Q 021218 184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQS 221 (316)
Q Consensus 184 Lavp~~~~~~vi~ei~~~mk~gaiLi-d~aGv~-l~~l~~ 221 (316)
+++|-.+..+.++.+.+++.+++.|+ .--|+. .+.+..
T Consensus 76 v~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~ 115 (305)
T PRK05708 76 LACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAA 115 (305)
T ss_pred EECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHH
Confidence 99999988889999999999988665 667875 334444
No 141
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.05 E-value=3.2e-05 Score=62.76 Aligned_cols=82 Identities=23% Similarity=0.278 Sum_probs=62.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccH-HHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~-~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp~ 188 (316)
.+|||||+|.+|......++.. ..+.++....++++... +.+++.|+.. +.+.+++++ +.|+|++++|+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~----~~~~~v~~v~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRS----SPDFEVVAVCDPDPERAEAFAEKYGIPV----YTDLEELLADEDVDAVIIATPP 72 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHT----TTTEEEEEEECSSHHHHHHHHHHTTSEE----ESSHHHHHHHTTESEEEEESSG
T ss_pred CEEEEECCcHHHHHHHHHHHhc----CCCcEEEEEEeCCHHHHHHHHHHhcccc----hhHHHHHHHhhcCCEEEEecCC
Confidence 4799999999999999888876 12456554445544333 4466778774 678999988 78999999999
Q ss_pred chHHHHHHHHHhc
Q 021218 189 AAQADNYEKIFSC 201 (316)
Q Consensus 189 ~~~~~vi~ei~~~ 201 (316)
..+.+++.+.++.
T Consensus 73 ~~h~~~~~~~l~~ 85 (120)
T PF01408_consen 73 SSHAEIAKKALEA 85 (120)
T ss_dssp GGHHHHHHHHHHT
T ss_pred cchHHHHHHHHHc
Confidence 9999988876554
No 142
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.04 E-value=3.1e-05 Score=65.53 Aligned_cols=112 Identities=20% Similarity=0.257 Sum_probs=77.9
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCC----------cCCHHhhhccCCEEE
Q 021218 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT----------LGDIYETISGSDLVL 183 (316)
Q Consensus 114 IGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t----------~~~~~e~i~~ADIVi 183 (316)
|.|+|.|.||.-+|..|.+. |.+|.+..|.. ..+.-.+.|+...+.. ..+..+.....|+||
T Consensus 1 I~I~G~GaiG~~~a~~L~~~------g~~V~l~~r~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 72 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA------GHDVTLVSRSP--RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVI 72 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT------TCEEEEEESHH--HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEE
T ss_pred CEEECcCHHHHHHHHHHHHC------CCceEEEEccc--cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEE
Confidence 78999999999999999888 99988777764 3444556676432111 111224578899999
Q ss_pred EcccCchHHHHHHHHHhcCCCCcEEE-EeCCch-hhhhhccccCCCCCccEEEecc
Q 021218 184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQSMGLDFPKNIGVIAVCP 237 (316)
Q Consensus 184 Lavp~~~~~~vi~ei~~~mk~gaiLi-d~aGv~-l~~l~~~~~~~~~~i~vI~vhP 237 (316)
++++-.+..+.++.+.+++++++.|+ .--|+. .+.+++ .++++ .++..+.
T Consensus 73 v~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~---~~~~~-~v~~g~~ 124 (151)
T PF02558_consen 73 VAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAE---YFPRP-RVLGGVT 124 (151)
T ss_dssp E-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHC---HSTGS-GEEEEEE
T ss_pred EEecccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHH---HcCCC-cEEEEEE
Confidence 99999999999999999998886554 556775 444544 44433 5554444
No 143
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.00 E-value=7.3e-06 Score=69.53 Aligned_cols=96 Identities=20% Similarity=0.202 Sum_probs=68.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCCcccHHHHHHCC---ceecCCCcCCHHhhhccCCE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDL 181 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~-Vivg~r~~~~s~~~A~~~G---~~~~~~t~~~~~e~i~~ADI 181 (316)
.+++| +++.|||.|-+|.+++..|.+. |.+ |.+.+|+.++..+.+...+ +.. ..+.+..+.+.++|+
T Consensus 8 ~~l~~-~~vlviGaGg~ar~v~~~L~~~------g~~~i~i~nRt~~ra~~l~~~~~~~~~~~--~~~~~~~~~~~~~Di 78 (135)
T PF01488_consen 8 GDLKG-KRVLVIGAGGAARAVAAALAAL------GAKEITIVNRTPERAEALAEEFGGVNIEA--IPLEDLEEALQEADI 78 (135)
T ss_dssp STGTT-SEEEEESSSHHHHHHHHHHHHT------TSSEEEEEESSHHHHHHHHHHHTGCSEEE--EEGGGHCHHHHTESE
T ss_pred CCcCC-CEEEEECCHHHHHHHHHHHHHc------CCCEEEEEECCHHHHHHHHHHcCccccce--eeHHHHHHHHhhCCe
Confidence 57899 9999999999999999999998 874 8888888666666666652 111 014566678899999
Q ss_pred EEEcccCchHHHHH-HHHHhcCCCC-cEEEEeC
Q 021218 182 VLLLISDAAQADNY-EKIFSCMKPN-SILGLSH 212 (316)
Q Consensus 182 ViLavp~~~~~~vi-~ei~~~mk~g-aiLid~a 212 (316)
||.++|.... .+ ++.++...+. .+++|.+
T Consensus 79 vI~aT~~~~~--~i~~~~~~~~~~~~~~v~Dla 109 (135)
T PF01488_consen 79 VINATPSGMP--IITEEMLKKASKKLRLVIDLA 109 (135)
T ss_dssp EEE-SSTTST--SSTHHHHTTTCHHCSEEEES-
T ss_pred EEEecCCCCc--ccCHHHHHHHHhhhhceeccc
Confidence 9999997755 22 2333333222 3788885
No 144
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.98 E-value=1.9e-05 Score=75.60 Aligned_cols=76 Identities=20% Similarity=0.233 Sum_probs=61.5
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| |+|+|||. |.||..+|..|.+. |..|.+...+ +.++.+.+++||+||.
T Consensus 154 i~l~G-k~v~vIG~S~ivG~Pla~lL~~~------gatVtv~~s~-------------------t~~l~~~~~~ADIVI~ 207 (284)
T PRK14179 154 VELEG-KHAVVIGRSNIVGKPMAQLLLDK------NATVTLTHSR-------------------TRNLAEVARKADILVV 207 (284)
T ss_pred CCCCC-CEEEEECCCCcCcHHHHHHHHHC------CCEEEEECCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 99999999 99999999999998 9888776211 1267788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+++..... ++ .++|+|++++|++
T Consensus 208 avg~~~~v---~~--~~ik~GavVIDvg 230 (284)
T PRK14179 208 AIGRGHFV---TK--EFVKEGAVVIDVG 230 (284)
T ss_pred ecCccccC---CH--HHccCCcEEEEec
Confidence 99977652 22 2389999999985
No 145
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.96 E-value=4.6e-05 Score=75.82 Aligned_cols=148 Identities=18% Similarity=0.160 Sum_probs=102.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC----ceecCCCcCCHHh---hhccCCEEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FTEENGTLGDIYE---TISGSDLVLL 184 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G----~~~~~~t~~~~~e---~i~~ADIViL 184 (316)
..||+||+|.||..+|.|+.+. |+.|.+++|..+++.+.-++.+ ++. ..+++| .++.---|+|
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~------G~~VavyNRt~~ktd~f~~~~~~~k~i~~----~~sieefV~~Le~PRkI~l 73 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADH------GYTVAVYNRTTEKTDEFLAERAKGKNIVP----AYSIEEFVASLEKPRKILL 73 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhc------CceEEEEeCCHHHHHHHHHhCccCCCccc----cCcHHHHHHHhcCCceEEE
Confidence 5799999999999999999999 9999999999877665555544 221 334554 5677888999
Q ss_pred cccCchH-HHHHHHHHhcCCCCcEEEEeCCch----hhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCc
Q 021218 185 LISDAAQ-ADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (316)
Q Consensus 185 avp~~~~-~~vi~ei~~~mk~gaiLid~aGv~----l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~ 259 (316)
.++-... ..++++++++|.+|.+|||-+--. ....++ .-.+++.||+.==++ |.|.-=.|
T Consensus 74 MVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~e---L~~~Gi~FvG~GVSG-----------GEeGA~~G- 138 (473)
T COG0362 74 MVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKE---LSEKGILFVGMGVSG-----------GEEGARHG- 138 (473)
T ss_pred EEecCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHH---HHhcCCeEEeccccc-----------cccccccC-
Confidence 9988644 459999999999999999976432 222221 224578888654322 21100011
Q ss_pred eEEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 260 ~~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
+. |-|. -++++.+.++-++.++-++
T Consensus 139 PS-iMpG--G~~eay~~v~pil~~IaAk 163 (473)
T COG0362 139 PS-IMPG--GQKEAYELVAPILTKIAAK 163 (473)
T ss_pred CC-cCCC--CCHHHHHHHHHHHHHHHhh
Confidence 22 4444 4568999999999988654
No 146
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.89 E-value=2.5e-05 Score=78.15 Aligned_cols=97 Identities=20% Similarity=0.216 Sum_probs=67.0
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
+++| ++++|||.|.||..+++.|+.. |. +|++.+++..+..+.+.+.|.... ...+..+.+.++|+||.+
T Consensus 179 ~~~~-~~vlViGaG~iG~~~a~~L~~~------G~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVI~a 249 (423)
T PRK00045 179 DLSG-KKVLVIGAGEMGELVAKHLAEK------GVRKITVANRTLERAEELAEEFGGEAI--PLDELPEALAEADIVISS 249 (423)
T ss_pred CccC-CEEEEECchHHHHHHHHHHHHC------CCCeEEEEeCCHHHHHHHHHHcCCcEe--eHHHHHHHhccCCEEEEC
Confidence 5789 9999999999999999999988 87 677787765555556666663210 123566788999999999
Q ss_pred ccCchH---HHHHHHHHh-cCCCCcEEEEeC
Q 021218 186 ISDAAQ---ADNYEKIFS-CMKPNSILGLSH 212 (316)
Q Consensus 186 vp~~~~---~~vi~ei~~-~mk~gaiLid~a 212 (316)
++.... .+.++.... .-+.+.+++|.+
T Consensus 250 T~s~~~~i~~~~l~~~~~~~~~~~~vviDla 280 (423)
T PRK00045 250 TGAPHPIIGKGMVERALKARRHRPLLLVDLA 280 (423)
T ss_pred CCCCCcEEcHHHHHHHHhhccCCCeEEEEeC
Confidence 985443 224443221 112345777886
No 147
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.83 E-value=3.9e-05 Score=75.70 Aligned_cols=98 Identities=15% Similarity=0.109 Sum_probs=67.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-C-CCcCCHHhhhccCCEEEEc
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-N-GTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~-~t~~~~~e~i~~ADIViLa 185 (316)
+.+ .++.|||.|.+|...++.++.. |.+|.+.+++..+....+...|.... . ....++.+.++++|+||.+
T Consensus 165 l~~-~~VlViGaG~vG~~aa~~a~~l------Ga~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 165 VEP-GDVTIIGGGVVGTNAAKMANGL------GATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CCC-ceEEEEcCCHHHHHHHHHHHHC------CCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEc
Confidence 556 7899999999999999999998 98877776654332222333443110 0 0012456788999999999
Q ss_pred ccC--chHHHHH-HHHHhcCCCCcEEEEeC
Q 021218 186 ISD--AAQADNY-EKIFSCMKPNSILGLSH 212 (316)
Q Consensus 186 vp~--~~~~~vi-~ei~~~mk~gaiLid~a 212 (316)
++. .....++ ++....||++.+|+|++
T Consensus 238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred cccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 853 2223344 46778899999999875
No 148
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.81 E-value=4.2e-05 Score=73.66 Aligned_cols=86 Identities=17% Similarity=0.167 Sum_probs=60.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHh-hhhhhcCC-cEEEEEecCCcccHHHHHHC---C--ceecCCCcCCHHhhhccCCE
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSD-IVVKVGLRKGSRSFAEARAA---G--FTEENGTLGDIYETISGSDL 181 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~-~~~~~g~G-~~Vivg~r~~~~s~~~A~~~---G--~~~~~~t~~~~~e~i~~ADI 181 (316)
.. ++|+|||.|.||..+++.+.. . + .+|.+++|..++..+.+.+. | +.. ..+.++++++||+
T Consensus 124 ~~-~~v~iiG~G~~a~~~~~al~~~~------~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~----~~~~~~av~~aDI 192 (314)
T PRK06141 124 DA-SRLLVVGTGRLASLLALAHASVR------PIKQVRVWGRDPAKAEALAAELRAQGFDAEV----VTDLEAAVRQADI 192 (314)
T ss_pred CC-ceEEEECCcHHHHHHHHHHHhcC------CCCEEEEEcCCHHHHHHHHHHHHhcCCceEE----eCCHHHHHhcCCE
Confidence 35 899999999999999987765 3 3 47888887765555544442 3 221 4578889999999
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEE
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLi 209 (316)
|+.+++.. ..++.. +.++||++|.
T Consensus 193 Vi~aT~s~--~pvl~~--~~l~~g~~i~ 216 (314)
T PRK06141 193 ISCATLST--EPLVRG--EWLKPGTHLD 216 (314)
T ss_pred EEEeeCCC--CCEecH--HHcCCCCEEE
Confidence 98888865 234432 4578998543
No 149
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.79 E-value=0.00052 Score=68.52 Aligned_cols=157 Identities=21% Similarity=0.277 Sum_probs=89.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCccc-------------------HHHHHHCCceecCCCcCCH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-------------------FAEARAAGFTEENGTLGDI 172 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s-------------------~~~A~~~G~~~~~~t~~~~ 172 (316)
.+|||||+|-+|..+|..+... |++| +|.|.++.. .+.+.+.|.-. .+.+.
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~------G~~V-iG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lr---aTtd~ 79 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA------GFKV-IGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLR---ATTDP 79 (436)
T ss_pred eEEEEEccccccHHHHHHHHHc------CCce-EeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCce---EecCh
Confidence 7999999999999999999888 8875 465544322 23455555321 13344
Q ss_pred HhhhccCCEEEEcccCchH----H------HHHHHHHhcCCCCcEEEE-e---CCch---hh-hhhc-cccCCCCCccEE
Q 021218 173 YETISGSDLVLLLISDAAQ----A------DNYEKIFSCMKPNSILGL-S---HGFL---LG-HLQS-MGLDFPKNIGVI 233 (316)
Q Consensus 173 ~e~i~~ADIViLavp~~~~----~------~vi~ei~~~mk~gaiLid-~---aGv~---l~-~l~~-~~~~~~~~i~vI 233 (316)
++ +++||++++|+|-.-. . ...+.|.+.|++|++|+. + .|.+ .. .++. .++.++.|+ ++
T Consensus 80 ~~-l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df-~l 157 (436)
T COG0677 80 EE-LKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDF-YL 157 (436)
T ss_pred hh-cccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCccccee-eE
Confidence 44 5699999999973211 1 123468999999999874 3 2443 11 2232 456665443 24
Q ss_pred Eecc--CCCchhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCeeec
Q 021218 234 AVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292 (316)
Q Consensus 234 ~vhP--n~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~~~t 292 (316)
..+| -.||..++++-..- = +-...+++..+.+.++-+.+=.+.+..|
T Consensus 158 aysPERv~PG~~~~el~~~~---------k---VIgG~tp~~~e~a~~lY~~iv~~~~~vt 206 (436)
T COG0677 158 AYSPERVLPGNVLKELVNNP---------K---VIGGVTPKCAELAAALYKTIVEGVIPVT 206 (436)
T ss_pred eeCccccCCCchhhhhhcCC---------c---eeecCCHHHHHHHHHHHHHheEEEEEcC
Confidence 4444 23344433322211 1 1123455666666666665544433333
No 150
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.76 E-value=7.4e-05 Score=72.42 Aligned_cols=93 Identities=17% Similarity=0.082 Sum_probs=63.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHH---HCCceecCCCcCCHHhhhccCCEEEEcccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~---~~G~~~~~~t~~~~~e~i~~ADIViLavp~ 188 (316)
+++||||+|.||..+++.+... . ...+|.++++..++..+.+. +.|+.. ..+.+.+|++++||+|+.|+|.
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~-~---~~~~v~V~~r~~~~~~~~~~~~~~~g~~v--~~~~~~~eav~~aDiVitaT~s 202 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRV-F---DLEEVSVYCRTPSTREKFALRASDYEVPV--RAATDPREAVEGCDILVTTTPS 202 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-C---CCCEEEEECCCHHHHHHHHHHHHhhCCcE--EEeCCHHHHhccCCEEEEecCC
Confidence 7999999999999999888663 1 12367777766554333333 345311 1256899999999999999986
Q ss_pred chHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 189 AAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 189 ~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
.. .++. .+.+|||+.|.-++..
T Consensus 203 ~~--P~~~--~~~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 203 RK--PVVK--ADWVSEGTHINAIGAD 224 (325)
T ss_pred CC--cEec--HHHcCCCCEEEecCCC
Confidence 42 3333 2346899988766544
No 151
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.76 E-value=0.00015 Score=67.92 Aligned_cols=160 Identities=18% Similarity=0.250 Sum_probs=91.3
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCc
Q 021218 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (316)
Q Consensus 111 ~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~ 189 (316)
|++|+|||+ |.||..+++.+.+. .++++....+.+.+........|+.. ..+.+++++++|+|+.++||.
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~-----~~~elvav~d~~~~~~~~~~~~~i~~----~~dl~~ll~~~DvVid~t~p~ 71 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA-----EDLELVAAVDRPGSPLVGQGALGVAI----TDDLEAVLADADVLIDFTTPE 71 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccccCCCCccc----cCCHHHhccCCCEEEECCCHH
Confidence 479999998 99999999988763 15676655554433222222334431 468888888999999999999
Q ss_pred hHHHHHHHHHhcCCCCc-EEEEeCCchhhhhhccccCCCCCccEEEeccCCCchh---hHHHHhcCccccCCCceEEE-e
Q 021218 190 AQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS---VRRLYVQGKEINGAGINSSF-A 264 (316)
Q Consensus 190 ~~~~vi~ei~~~mk~ga-iLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~---~r~lf~~G~e~~G~G~~~ii-a 264 (316)
...+++...+++ |. +++-..|++....+..... .++++++ ..||..-.. ++-+-...+.+ |. ..+-| -
T Consensus 72 ~~~~~~~~al~~---G~~vvigttG~s~~~~~~l~~a-a~~~~v~-~s~n~s~g~~~~~~l~~~aa~~l-~~-~d~ei~E 144 (257)
T PRK00048 72 ATLENLEFALEH---GKPLVIGTTGFTEEQLAELEEA-AKKIPVV-IAPNFSIGVNLLMKLAEKAAKYL-GD-YDIEIIE 144 (257)
T ss_pred HHHHHHHHHHHc---CCCEEEECCCCCHHHHHHHHHH-hcCCCEE-EECcchHHHHHHHHHHHHHHHhc-CC-CCEEEEE
Confidence 887777665543 44 4444557765444321111 2344444 444432221 11111111111 11 22222 2
Q ss_pred ecc----C-CCHHHHHHHHHHHHHcCC
Q 021218 265 VHQ----D-VDGRATNVALGWSVALGS 286 (316)
Q Consensus 265 p~~----d-~~~~a~e~a~~l~~alG~ 286 (316)
-|. | .++.|+.+++.+.+..+.
T Consensus 145 ~HH~~K~DaPSGTA~~l~~~i~~~~~~ 171 (257)
T PRK00048 145 AHHRHKVDAPSGTALKLAEAIAEARGR 171 (257)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHhhcc
Confidence 232 3 479999999999887763
No 152
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.75 E-value=5.5e-05 Score=75.73 Aligned_cols=98 Identities=16% Similarity=0.158 Sum_probs=66.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
..++| ++++|||.|.||..+++.|+.. | .+|++.+|...+..+.+.+.|.... ...+..+.+.++|+||.
T Consensus 176 ~~l~~-~~VlViGaG~iG~~~a~~L~~~------G~~~V~v~~rs~~ra~~la~~~g~~~i--~~~~l~~~l~~aDvVi~ 246 (417)
T TIGR01035 176 GSLKG-KKALLIGAGEMGELVAKHLLRK------GVGKILIANRTYERAEDLAKELGGEAV--KFEDLEEYLAEADIVIS 246 (417)
T ss_pred CCccC-CEEEEECChHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCeEe--eHHHHHHHHhhCCEEEE
Confidence 45889 9999999999999999999988 8 5777887775554556666654210 12356788899999999
Q ss_pred cccCchHH---HHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQA---DNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~---~vi~ei~~~mk~gaiLid~a 212 (316)
|++..... +.++.....-+...+++|.+
T Consensus 247 aT~s~~~ii~~e~l~~~~~~~~~~~~viDla 277 (417)
T TIGR01035 247 STGAPHPIVSKEDVERALRERTRPLFIIDIA 277 (417)
T ss_pred CCCCCCceEcHHHHHHHHhcCCCCeEEEEeC
Confidence 99755432 23332211101234677876
No 153
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.74 E-value=7.2e-05 Score=71.75 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=61.4
Q ss_pred cccCCCCEEEEEcccch-HHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~m-G~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| +++.|||.|.+ |..++..|... |..|.+...+ ..++.+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVt~~hs~-------------------t~~l~~~~~~ADIVV~ 207 (285)
T PRK14189 154 IPLRG-AHAVVIGRSNIVGKPMAMLLLQA------GATVTICHSK-------------------TRDLAAHTRQADIVVA 207 (285)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEecCC-------------------CCCHHHHhhhCCEEEE
Confidence 46899 99999999988 99999999988 8887664321 2367889999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+++-.. ++.. +++|+|++|+|++
T Consensus 208 avG~~~---~i~~--~~ik~gavVIDVG 230 (285)
T PRK14189 208 AVGKRN---VLTA--DMVKPGATVIDVG 230 (285)
T ss_pred cCCCcC---ccCH--HHcCCCCEEEEcc
Confidence 999433 4543 6789999999986
No 154
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.71 E-value=0.00011 Score=65.09 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=59.9
Q ss_pred cccCCCCEEEEEcccch-HHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~m-G~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| ++|.|||.|.| |..+|+.|.+. |.+|.+..|+. .++.+.+++||+||.
T Consensus 40 ~~l~g-k~vlViG~G~~~G~~~a~~L~~~------g~~V~v~~r~~-------------------~~l~~~l~~aDiVIs 93 (168)
T cd01080 40 IDLAG-KKVVVVGRSNIVGKPLAALLLNR------NATVTVCHSKT-------------------KNLKEHTKQADIVIV 93 (168)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHhhC------CCEEEEEECCc-------------------hhHHHHHhhCCEEEE
Confidence 57899 99999999997 77799999998 88777776541 156788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+++-.. ++.. +.++++.+++|++
T Consensus 94 at~~~~---ii~~--~~~~~~~viIDla 116 (168)
T cd01080 94 AVGKPG---LVKG--DMVKPGAVVIDVG 116 (168)
T ss_pred cCCCCc---eecH--HHccCCeEEEEcc
Confidence 999764 3432 1367788888875
No 155
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.69 E-value=0.0003 Score=66.30 Aligned_cols=81 Identities=21% Similarity=0.232 Sum_probs=52.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC--CceecCCCcCCHHhhhccCCEEEEcccC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIYETISGSDLVLLLISD 188 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~--G~~~~~~t~~~~~e~i~~ADIViLavp~ 188 (316)
|++|||||+|.||..+++.+.+. .++++...........+..... +... +.+.+++-.+.|+|+.|+|+
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~-----~~~~l~~v~~~~~~~~~~~~~~~~~~~~----~~d~~~l~~~~DvVve~t~~ 71 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHD-----PDLRVDWVIVPEHSIDAVRRALGEAVRV----VSSVDALPQRPDLVVECAGH 71 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhC-----CCceEEEEEEcCCCHHHHhhhhccCCee----eCCHHHhccCCCEEEECCCH
Confidence 58999999999999999998764 1344433322222111111212 3332 45777764569999999999
Q ss_pred chHHHHHHHHHh
Q 021218 189 AAQADNYEKIFS 200 (316)
Q Consensus 189 ~~~~~vi~ei~~ 200 (316)
..+.++..+.+.
T Consensus 72 ~~~~e~~~~aL~ 83 (265)
T PRK13303 72 AALKEHVVPILK 83 (265)
T ss_pred HHHHHHHHHHHH
Confidence 888777666554
No 156
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.65 E-value=0.00012 Score=68.50 Aligned_cols=154 Identities=16% Similarity=0.207 Sum_probs=106.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-----------CCceec-C------------
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE-N------------ 166 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~-~------------ 166 (316)
|+.++|||.|.||..+|+-...+ |++|.+.+++. +.+.+|.+ .+..+. .
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~s------g~~V~l~d~~~-~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~r 83 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATS------GLNVWLVDANE-DALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDR 83 (298)
T ss_pred ccceEEEcccccchhHHHHHHhc------CCceEEecCCH-HHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHH
Confidence 47899999999999999999888 99988776543 22222221 111110 0
Q ss_pred -CCcCCHHhhhccCCEEEEcccCchHH--HHHHHHHhcCCCCcEEE-EeCCchhhhhhccccCCCCCccEEEeccCCCch
Q 021218 167 -GTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (316)
Q Consensus 167 -~t~~~~~e~i~~ADIViLavp~~~~~--~vi~ei~~~mk~gaiLi-d~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~ 242 (316)
.+..+..++++++|+||=++-.+... ++++++-...|+.++++ ..+.+.+..+.. .....-.|.+.|=--|.+
T Consensus 84 i~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~---~~~~~srf~GlHFfNPvP 160 (298)
T KOG2304|consen 84 IKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIAS---ATQRPSRFAGLHFFNPVP 160 (298)
T ss_pred HHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHh---hccChhhhceeeccCCch
Confidence 11456778889999998777655543 36777777778888876 778888777665 333345677888766677
Q ss_pred hhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCC
Q 021218 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 243 ~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~ 288 (316)
.|. |.+ +.-+.+++++.......+.+.+|..-
T Consensus 161 vMK-LvE-------------Vir~~~TS~eTf~~l~~f~k~~gKtt 192 (298)
T KOG2304|consen 161 VMK-LVE-------------VIRTDDTSDETFNALVDFGKAVGKTT 192 (298)
T ss_pred hHH-Hhh-------------hhcCCCCCHHHHHHHHHHHHHhCCCc
Confidence 652 222 35567888999999899999999654
No 157
>PLN00203 glutamyl-tRNA reductase
Probab=97.65 E-value=0.0002 Score=73.83 Aligned_cols=99 Identities=15% Similarity=0.114 Sum_probs=65.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhhccCCEEEE
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~-G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
+|.+ ++|+|||.|.||..+++.|... |. +|++.+|+..+..+.+.+. |....-....+..+++.++|+||.
T Consensus 263 ~l~~-kkVlVIGAG~mG~~~a~~L~~~------G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIs 335 (519)
T PLN00203 263 SHAS-ARVLVIGAGKMGKLLVKHLVSK------GCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFT 335 (519)
T ss_pred CCCC-CEEEEEeCHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEE
Confidence 3778 9999999999999999999988 86 6888888766555555554 221000013466788999999999
Q ss_pred cccCch---HHHHHHHHHhcCC---CCcEEEEeC
Q 021218 185 LISDAA---QADNYEKIFSCMK---PNSILGLSH 212 (316)
Q Consensus 185 avp~~~---~~~vi~ei~~~mk---~gaiLid~a 212 (316)
+++-.. ..+.++++.+.-+ ...+++|.+
T Consensus 336 AT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLA 369 (519)
T PLN00203 336 STSSETPLFLKEHVEALPPASDTVGGKRLFVDIS 369 (519)
T ss_pred ccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeC
Confidence 986433 2345554432211 113566764
No 158
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.63 E-value=0.00019 Score=68.90 Aligned_cols=77 Identities=14% Similarity=0.197 Sum_probs=62.3
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~-mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| +++.|||.|. +|..+|+.|... |..|.+..++. .++.+.+++||+||.
T Consensus 154 i~l~G-k~vvVIGrs~~VG~pla~lL~~~------gatVtv~~s~t-------------------~~l~~~~~~ADIVIs 207 (286)
T PRK14175 154 IDLEG-KNAVVIGRSHIVGQPVSKLLLQK------NASVTILHSRS-------------------KDMASYLKDADVIVS 207 (286)
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCCc-------------------hhHHHHHhhCCEEEE
Confidence 47999 9999999988 999999999988 88887776531 156788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
+++-.. ++.. +++|+|++++|++-
T Consensus 208 Avg~p~---~i~~--~~vk~gavVIDvGi 231 (286)
T PRK14175 208 AVGKPG---LVTK--DVVKEGAVIIDVGN 231 (286)
T ss_pred CCCCCc---ccCH--HHcCCCcEEEEcCC
Confidence 998654 3432 35789999999864
No 159
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.60 E-value=0.00019 Score=59.54 Aligned_cols=92 Identities=17% Similarity=0.167 Sum_probs=58.8
Q ss_pred EEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEE-EecCCcccHHHHHHCC----ceecCCCc-CCHHhhhccCCEEEEc
Q 021218 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAG----FTEENGTL-GDIYETISGSDLVLLL 185 (316)
Q Consensus 113 kIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Viv-g~r~~~~s~~~A~~~G----~~~~~~t~-~~~~e~i~~ADIViLa 185 (316)
||+||| .|.+|..+.+.|.+. ..++++. ..++.+.-.......+ +.. -.+ ....+.++++|+|++|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-----p~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dvvf~a 73 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-----PDFELVALVSSSRSAGKPLSEVFPHPKGFED--LSVEDADPEELSDVDVVFLA 73 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----STEEEEEEEESTTTTTSBHHHTTGGGTTTEE--EBEEETSGHHHTTESEEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcC-----CCccEEEeeeeccccCCeeehhccccccccc--eeEeecchhHhhcCCEEEec
Confidence 699999 999999999999885 1344433 3333312122222222 211 001 1233456999999999
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
+|.....++.+++ +++|..|+|.++-
T Consensus 74 ~~~~~~~~~~~~~---~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 74 LPHGASKELAPKL---LKAGIKVIDLSGD 99 (121)
T ss_dssp SCHHHHHHHHHHH---HHTTSEEEESSST
T ss_pred CchhHHHHHHHHH---hhCCcEEEeCCHH
Confidence 9999888888876 4568899998874
No 160
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=97.56 E-value=0.00018 Score=70.89 Aligned_cols=94 Identities=24% Similarity=0.278 Sum_probs=77.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
.-++| |++.|.|+|-.|...|+.+|.. |.+|++..-.+-+.+ +|.-.||. +..++|+++.+|++|-+
T Consensus 205 ~liaG-K~vVV~GYG~vGrG~A~~~rg~------GA~ViVtEvDPI~Al-eA~MdGf~-----V~~m~~Aa~~gDifiT~ 271 (420)
T COG0499 205 VLLAG-KNVVVAGYGWVGRGIAMRLRGM------GARVIVTEVDPIRAL-EAAMDGFR-----VMTMEEAAKTGDIFVTA 271 (420)
T ss_pred eeecC-ceEEEecccccchHHHHHhhcC------CCeEEEEecCchHHH-HHhhcCcE-----EEEhHHhhhcCCEEEEc
Confidence 35788 9999999999999999999988 999988876644433 56778998 45899999999999999
Q ss_pred ccCchHHHHHH-HHHhcCCCCcEEEEeCCch
Q 021218 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 186 vp~~~~~~vi~-ei~~~mk~gaiLid~aGv~ 215 (316)
+-... ++. +.+..||+|++|..++-|.
T Consensus 272 TGnkd---Vi~~eh~~~MkDgaIl~N~GHFd 299 (420)
T COG0499 272 TGNKD---VIRKEHFEKMKDGAILANAGHFD 299 (420)
T ss_pred cCCcC---ccCHHHHHhccCCeEEecccccc
Confidence 87654 565 7778899999998776553
No 161
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.56 E-value=0.00022 Score=68.54 Aligned_cols=93 Identities=20% Similarity=0.153 Sum_probs=66.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHC---CceecCCCcCCHHhhhccCCEEEE
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~---G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.. ++++|||.|.||..+++.+... .+. +|.++.|..++..+.+.+. ++... ..+.+++++++|+|+.
T Consensus 124 ~~-~~v~IiGaG~qa~~~~~al~~~-----~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~---~~~~~~av~~aDiVit 194 (304)
T PRK07340 124 PP-GDLLLIGTGVQARAHLEAFAAG-----LPVRRVWVRGRTAASAAAFCAHARALGPTAE---PLDGEAIPEAVDLVVT 194 (304)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHh-----CCCCEEEEEcCCHHHHHHHHHHHHhcCCeeE---ECCHHHHhhcCCEEEE
Confidence 45 8999999999999999999752 043 5777777655544444443 22210 3478889999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeCCch
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~aGv~ 215 (316)
++|... -++.. .+|||+.|.-++...
T Consensus 195 aT~s~~--Pl~~~---~~~~g~hi~~iGs~~ 220 (304)
T PRK07340 195 ATTSRT--PVYPE---AARAGRLVVAVGAFT 220 (304)
T ss_pred ccCCCC--ceeCc---cCCCCCEEEecCCCC
Confidence 999764 34442 479999888766543
No 162
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.55 E-value=0.00018 Score=63.90 Aligned_cols=98 Identities=20% Similarity=0.160 Sum_probs=63.6
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC----Cc--eecCC-CcCCHHhhhc
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GF--TEENG-TLGDIYETIS 177 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~----G~--~~~~~-t~~~~~e~i~ 177 (316)
.+++| +++.|+|. |.+|.++++.|.+. |.+|++..|+.++..+.+... +. ...+. ...+..+.++
T Consensus 24 ~~l~~-~~vlVlGgtG~iG~~~a~~l~~~------g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 96 (194)
T cd01078 24 KDLKG-KTAVVLGGTGPVGQRAAVLLARE------GARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIK 96 (194)
T ss_pred cCCCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHh
Confidence 46789 99999995 99999999999988 888877777644333332221 11 10000 0122347889
Q ss_pred cCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 178 ~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++|+||.++|..... ........+++.+++|+.
T Consensus 97 ~~diVi~at~~g~~~--~~~~~~~~~~~~vv~D~~ 129 (194)
T cd01078 97 GADVVFAAGAAGVEL--LEKLAWAPKPLAVAADVN 129 (194)
T ss_pred cCCEEEECCCCCcee--chhhhcccCceeEEEEcc
Confidence 999999999987752 112222345677888874
No 163
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.53 E-value=0.00032 Score=70.48 Aligned_cols=97 Identities=19% Similarity=0.246 Sum_probs=71.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|++ +++.|||.|-||.-.|+.|... |. +|++.+|.-++..+.|.+.|... -.+.++.+.+.++|+||.
T Consensus 174 ~~L~~-~~vlvIGAGem~~lva~~L~~~------g~~~i~IaNRT~erA~~La~~~~~~~--~~l~el~~~l~~~DvVis 244 (414)
T COG0373 174 GSLKD-KKVLVIGAGEMGELVAKHLAEK------GVKKITIANRTLERAEELAKKLGAEA--VALEELLEALAEADVVIS 244 (414)
T ss_pred ccccc-CeEEEEcccHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHHhCCee--ecHHHHHHhhhhCCEEEE
Confidence 45899 9999999999999999999998 85 78899999888888899988442 124567788999999999
Q ss_pred cccCch-H-H-HHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAA-Q-A-DNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~-~-~-~vi~ei~~~mk~gaiLid~a 212 (316)
++.-.. + . +.+++....-+. -+++|.+
T Consensus 245 sTsa~~~ii~~~~ve~a~~~r~~-~livDia 274 (414)
T COG0373 245 STSAPHPIITREMVERALKIRKR-LLIVDIA 274 (414)
T ss_pred ecCCCccccCHHHHHHHHhcccC-eEEEEec
Confidence 975332 2 2 244443332222 3556664
No 164
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.52 E-value=0.00091 Score=63.15 Aligned_cols=162 Identities=15% Similarity=0.141 Sum_probs=91.5
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEec-CCcccH--HHHHH-----CCceecCCCcCCHHhhhccCCE
Q 021218 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSF--AEARA-----AGFTEENGTLGDIYETISGSDL 181 (316)
Q Consensus 111 ~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r-~~~~s~--~~A~~-----~G~~~~~~t~~~~~e~i~~ADI 181 (316)
|++|+||| +|.||..+++.+.+. .+++++...+ .++... +.+.. .|+.. +.+++++..++|+
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~-----~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~----~~d~~~l~~~~Dv 71 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAA-----EGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPV----TDDLEAVETDPDV 71 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccCCCHHHhcCcCcCCcee----eCCHHHhcCCCCE
Confidence 47999999 699999999998863 1677665555 322111 12222 23332 3577777567999
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCc-EEEEeCCchhhhhhccccCCCC-CccEEEeccCCCchh--hHH-HHhcCccccC
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPK-NIGVIAVCPKGMGPS--VRR-LYVQGKEING 256 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~ga-iLid~aGv~l~~l~~~~~~~~~-~i~vI~vhPn~pg~~--~r~-lf~~G~e~~G 256 (316)
||.++||....+++...+.+ |. +|+-..|++....+.....-.+ ++. +.+.||+.--. +-. +....+...+
T Consensus 72 VIdfT~p~~~~~~~~~al~~---g~~vVigttg~~~e~~~~l~~aA~~~g~~-v~~a~NfSlGv~ll~~~~~~aa~~l~~ 147 (266)
T TIGR00036 72 LIDFTTPEGVLNHLKFALEH---GVRLVVGTTGFSEEDKQELADLAEKAGIA-AVIAPNFSIGVNLMFKLLEKAAKYLGD 147 (266)
T ss_pred EEECCChHHHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHHHhcCCcc-EEEECcccHHHHHHHHHHHHHHHhccC
Confidence 99999998888877765543 33 5555568764433321111111 233 44556665433 111 1111111111
Q ss_pred CCceEEEeecc-----CCCHHHHHHHHHHHHHcCC
Q 021218 257 AGINSSFAVHQ-----DVDGRATNVALGWSVALGS 286 (316)
Q Consensus 257 ~G~~~iiap~~-----d~~~~a~e~a~~l~~alG~ 286 (316)
+.+- |+--|. -.++.|+.+++.+.+..+.
T Consensus 148 ~die-I~E~HH~~K~DaPSGTA~~l~~~i~~~~~~ 181 (266)
T TIGR00036 148 YDIE-IIELHHRHKKDAPSGTALKTAEMIAEARGE 181 (266)
T ss_pred CCEE-eeeeccCCCCCCCCHHHHHHHHHHHHhhcc
Confidence 2222 233333 2479999999998888763
No 165
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=97.52 E-value=0.00057 Score=66.41 Aligned_cols=126 Identities=21% Similarity=0.192 Sum_probs=88.7
Q ss_pred cccccchhhhhhccccchhhHHhhcCCccccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 021218 72 LDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (316)
Q Consensus 72 ~~~~~~~~~~~~~~l~~~~e~vv~~G~w~F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~ 151 (316)
++-|-++=|.+--||-+-+|.++ .|-=+-. -.-+.| |...|.|+|..|..-|+.||.+ |-.|++..-.+-
T Consensus 179 iNVNDSVTKsKFDnLygcreSl~-DgikraT--DvM~aG-Kv~Vv~GYGdVGKgCaqaLkg~------g~~VivTEiDPI 248 (434)
T KOG1370|consen 179 INVNDSVTKSKFDNLYGCRESLL-DGIKRAT--DVMIAG-KVAVVCGYGDVGKGCAQALKGF------GARVIVTEIDPI 248 (434)
T ss_pred eeccchhhhhhccccccchhhhh-hhhhhhh--hheecc-cEEEEeccCccchhHHHHHhhc------CcEEEEeccCch
Confidence 45566666665556666555541 1111100 123567 8999999999999999999999 988888765543
Q ss_pred ccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeCCch
Q 021218 152 RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 152 ~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~aGv~ 215 (316)
..+ .|.-.|+. +..++|++++.||++-++--..+ +..+.+..||.++||...+-+.
T Consensus 249 ~AL-QAaMeG~~-----V~tm~ea~~e~difVTtTGc~di--i~~~H~~~mk~d~IvCN~Ghfd 304 (434)
T KOG1370|consen 249 CAL-QAAMEGYE-----VTTLEEAIREVDIFVTTTGCKDI--ITGEHFDQMKNDAIVCNIGHFD 304 (434)
T ss_pred HHH-HHHhhccE-----eeeHHHhhhcCCEEEEccCCcch--hhHHHHHhCcCCcEEecccccc
Confidence 333 45557887 46899999999999998765432 3348889999999998776554
No 166
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.49 E-value=0.00087 Score=65.59 Aligned_cols=96 Identities=20% Similarity=0.199 Sum_probs=63.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHH-HHHHCCceec-----------CC---CcCCHHhh
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARAAGFTEE-----------NG---TLGDIYET 175 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~-~A~~~G~~~~-----------~~---t~~~~~e~ 175 (316)
|.+|||+|+|.||+.+++.+.+. .+++++...+.+....+ .+++.|+... +. ...+.+++
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~-----~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el 75 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ-----PDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDL 75 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC-----CCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHh
Confidence 57999999999999999988764 15676655554332222 2333342100 00 02356777
Q ss_pred hccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 176 i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
+.++|+|+.|+|+....+...... +.|+.+++.+|.
T Consensus 76 ~~~vDVVIdaT~~~~~~e~a~~~~---~aGk~VI~~~~~ 111 (341)
T PRK04207 76 LEKADIVVDATPGGVGAKNKELYE---KAGVKAIFQGGE 111 (341)
T ss_pred hccCCEEEECCCchhhHHHHHHHH---HCCCEEEEcCCC
Confidence 889999999999988877776544 347778888774
No 167
>PRK06223 malate dehydrogenase; Reviewed
Probab=97.46 E-value=0.0011 Score=63.06 Aligned_cols=69 Identities=25% Similarity=0.239 Sum_probs=43.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHH--CCceec--CC---CcCCHHhhhccCCEE
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--AGFTEE--NG---TLGDIYETISGSDLV 182 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~--~G~~~~--~~---t~~~~~e~i~~ADIV 182 (316)
|+||+|||.|.||..+|..+... |+ +|++.+...+.....+.+ ...... +. ...+. +.+++||+|
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~------~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiV 74 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK------ELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVV 74 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEE
Confidence 68999999999999999988876 54 777776643322221211 110000 00 12344 568999999
Q ss_pred EEcc
Q 021218 183 LLLI 186 (316)
Q Consensus 183 iLav 186 (316)
|+++
T Consensus 75 ii~~ 78 (307)
T PRK06223 75 VITA 78 (307)
T ss_pred EECC
Confidence 9986
No 168
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.42 E-value=0.00044 Score=57.93 Aligned_cols=94 Identities=19% Similarity=0.252 Sum_probs=60.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccH---HHHH-----HCCceecCCCcCCHHhhhccCCEE
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEAR-----AAGFTEENGTLGDIYETISGSDLV 182 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~---~~A~-----~~G~~~~~~t~~~~~e~i~~ADIV 182 (316)
++|+|+|+ |.||..+++.+.+. .++++..+.+++.... +... ..|+.. ..++++++.++|+|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-----~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v----~~~l~~~~~~~DVv 71 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-----PGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV----TDDLEELLEEADVV 71 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-----TTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE----BS-HHHHTTH-SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCcEEEEEEecCCcccccchhhhhhCcCCccccc----chhHHHhcccCCEE
Confidence 58999999 99999999999983 1777665555433100 0011 223332 46889999999999
Q ss_pred EEcccCchHHHHHHHHHhcCCCCc-EEEEeCCchhh
Q 021218 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLG 217 (316)
Q Consensus 183 iLavp~~~~~~vi~ei~~~mk~ga-iLid~aGv~l~ 217 (316)
|-.+-|....+.++...++ |. +|+=..|++-.
T Consensus 72 IDfT~p~~~~~~~~~~~~~---g~~~ViGTTG~~~~ 104 (124)
T PF01113_consen 72 IDFTNPDAVYDNLEYALKH---GVPLVIGTTGFSDE 104 (124)
T ss_dssp EEES-HHHHHHHHHHHHHH---T-EEEEE-SSSHHH
T ss_pred EEcCChHHhHHHHHHHHhC---CCCEEEECCCCCHH
Confidence 9999887777777765554 33 45567888643
No 169
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.38 E-value=0.00094 Score=62.34 Aligned_cols=92 Identities=25% Similarity=0.304 Sum_probs=62.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vi-vg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
++|||||+|.||..+...+++- ..+.+.+ ++++..++..+.+...+.. ...+++|.+++.|+|+=|..+++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~----~~~~e~v~v~D~~~ek~~~~~~~~~~~----~~s~ide~~~~~DlvVEaAS~~A 72 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDG----RVDFELVAVYDRDEEKAKELEASVGRR----CVSDIDELIAEVDLVVEAASPEA 72 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcC----CcceeEEEEecCCHHHHHHHHhhcCCC----ccccHHHHhhccceeeeeCCHHH
Confidence 5799999999999999988863 0124544 4444433333333333433 24689999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCC
Q 021218 191 QADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 191 ~~~vi~ei~~~mk~gaiLid~aG 213 (316)
..+...+++..=++ +|+.+-|
T Consensus 73 v~e~~~~~L~~g~d--~iV~SVG 93 (255)
T COG1712 73 VREYVPKILKAGID--VIVMSVG 93 (255)
T ss_pred HHHHhHHHHhcCCC--EEEEech
Confidence 99988877654222 4444444
No 170
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.37 E-value=0.00053 Score=66.36 Aligned_cols=91 Identities=19% Similarity=0.230 Sum_probs=63.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~----~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
++++|||.|.||..++..+... .+. +|.+..|..++..+.+.+ .++.. ..+.+.+++++++|+|+.|+
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~-----~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~aDiVi~aT 200 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAV-----RDIERVRVYSRTFEKAYAFAQEIQSKFNTEI--YVVNSADEAIEEADIIVTVT 200 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhc-----CCccEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEcc
Confidence 8999999999999999877543 044 566676665544444432 24321 11457889999999999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
|-.. .++. ..+|+|+.|+-++..
T Consensus 201 ~s~~--p~i~---~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 201 NAKT--PVFS---EKLKKGVHINAVGSF 223 (325)
T ss_pred CCCC--cchH---HhcCCCcEEEecCCC
Confidence 9662 3443 567999998866654
No 171
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.34 E-value=0.00067 Score=69.90 Aligned_cols=96 Identities=15% Similarity=0.158 Sum_probs=67.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec--C----CC--------c-CC--
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--N----GT--------L-GD-- 171 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~--~----~t--------~-~~-- 171 (316)
.+ .++.|||.|.+|...++.++.. |.+|++.+++ ....+.++..|...- + +. . .+
T Consensus 163 p~-akVlViGaG~iGl~Aa~~ak~l------GA~V~v~d~~-~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 163 PP-AKVLVIGAGVAGLAAIGAANSL------GAIVRAFDTR-PEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCeEEeccccccccccccceeecCHHHH
Confidence 44 7999999999999999999998 8876666555 446777877776420 0 00 0 00
Q ss_pred ------HHhhhccCCEEEEcc--cCchHHHHH-HHHHhcCCCCcEEEEeC
Q 021218 172 ------IYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (316)
Q Consensus 172 ------~~e~i~~ADIViLav--p~~~~~~vi-~ei~~~mk~gaiLid~a 212 (316)
+.+.++++|+||.++ |-.....++ ++..+.||+|.+|+|++
T Consensus 235 ~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 235 AAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEee
Confidence 345678999999988 222223444 47788999999999875
No 172
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.33 E-value=0.00039 Score=69.85 Aligned_cols=76 Identities=13% Similarity=0.175 Sum_probs=59.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhhccCCEEE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVL 183 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G-~~~~~~t~~~~~e~i~~ADIVi 183 (316)
.++.| +++.|||.|.||..+++.|.+. |. ++++.+|...+..+.+.+.+ ... ..+.++.+.+.++|+||
T Consensus 177 ~~l~~-kkvlviGaG~~a~~va~~L~~~------g~~~I~V~nRt~~ra~~La~~~~~~~~--~~~~~l~~~l~~aDiVI 247 (414)
T PRK13940 177 DNISS-KNVLIIGAGQTGELLFRHVTAL------APKQIMLANRTIEKAQKITSAFRNASA--HYLSELPQLIKKADIII 247 (414)
T ss_pred cCccC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHhcCCeE--ecHHHHHHHhccCCEEE
Confidence 56889 9999999999999999999988 85 68888887666666777654 211 01345567899999999
Q ss_pred EcccCch
Q 021218 184 LLISDAA 190 (316)
Q Consensus 184 Lavp~~~ 190 (316)
.|++-..
T Consensus 248 ~aT~a~~ 254 (414)
T PRK13940 248 AAVNVLE 254 (414)
T ss_pred ECcCCCC
Confidence 9998654
No 173
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.33 E-value=0.00073 Score=65.95 Aligned_cols=77 Identities=10% Similarity=0.224 Sum_probs=51.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
.+|+|||+|+||..+++.+.+. .+++++...++++.. ......+... ..+.++.+.+.|+|++|+|....
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~-----pd~ELVgV~dr~~~~-~~~~~~~v~~----~~d~~e~l~~iDVViIctPs~th 73 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQ-----PDMELVGVFSRRGAE-TLDTETPVYA----VADDEKHLDDVDVLILCMGSATD 73 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhC-----CCcEEEEEEcCCcHH-HHhhcCCccc----cCCHHHhccCCCEEEEcCCCccC
Confidence 6899999999999999998764 157755444443211 1222234331 34677778899999999998776
Q ss_pred HHHHHHH
Q 021218 192 ADNYEKI 198 (316)
Q Consensus 192 ~~vi~ei 198 (316)
.+....+
T Consensus 74 ~~~~~~~ 80 (324)
T TIGR01921 74 IPEQAPY 80 (324)
T ss_pred HHHHHHH
Confidence 5544433
No 174
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.30 E-value=0.00075 Score=64.61 Aligned_cols=76 Identities=13% Similarity=0.196 Sum_probs=59.5
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~-mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| +++.|||.|. .|.+++..|.+. |..|.+..++ ..++.+.+++||+||.
T Consensus 155 i~l~G-k~vvViG~gg~vGkpia~~L~~~------gatVtv~~~~-------------------t~~L~~~~~~aDIvI~ 208 (283)
T PRK14192 155 IELAG-KHAVVVGRSAILGKPMAMMLLNA------NATVTICHSR-------------------TQNLPELVKQADIIVG 208 (283)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHhC------CCEEEEEeCC-------------------chhHHHHhccCCEEEE
Confidence 57899 9999999997 999999999888 8877777652 1156677799999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+++-.. .+. .+++++|++++|+.
T Consensus 209 AtG~~~---~v~--~~~lk~gavViDvg 231 (283)
T PRK14192 209 AVGKPE---LIK--KDWIKQGAVVVDAG 231 (283)
T ss_pred ccCCCC---cCC--HHHcCCCCEEEEEE
Confidence 995222 343 24589999999875
No 175
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.30 E-value=0.00099 Score=64.00 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=60.5
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~-mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| +++.|||.|. .|..++..|... +..|.+..++ +.++.+.+++||+||.
T Consensus 155 i~l~G-k~vvViGrs~iVG~Pla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvi~ 208 (285)
T PRK10792 155 IDTYG-LNAVVVGASNIVGRPMSLELLLA------GCTVTVCHRF-------------------TKNLRHHVRNADLLVV 208 (285)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHC------CCeEEEEECC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 9999999998 999999999887 8877776543 1267888999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-... +.. +++|+|++|+|++
T Consensus 209 avG~p~~---v~~--~~vk~gavVIDvG 231 (285)
T PRK10792 209 AVGKPGF---IPG--EWIKPGAIVIDVG 231 (285)
T ss_pred cCCCccc---ccH--HHcCCCcEEEEcc
Confidence 9953332 221 5689999999986
No 176
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.29 E-value=0.0024 Score=61.27 Aligned_cols=91 Identities=19% Similarity=0.177 Sum_probs=63.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCccc--HHHHHHCCceecCCCcCCHHhhhc--cCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--FAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s--~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp 187 (316)
.+|||||.|+||..++..+.+. .+.++....+.++++ .+.+++.|+.. ...+.+++++ +.|+|++++|
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~-----~~~elvaV~d~d~es~~la~A~~~Gi~~---~~~~~e~ll~~~dIDaV~iaTp 73 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS-----EHLEMVAMVGIDPESDGLARARELGVKT---SAEGVDGLLANPDIDIVFDATS 73 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC-----CCcEEEEEEeCCcccHHHHHHHHCCCCE---EECCHHHHhcCCCCCEEEECCC
Confidence 5899999999999988777654 145554434333333 45677888653 1346777775 5789999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
...+.++..+.. +.|+.++|-..
T Consensus 74 ~~~H~e~a~~al---~aGk~VIdekP 96 (285)
T TIGR03215 74 AKAHARHARLLA---ELGKIVIDLTP 96 (285)
T ss_pred cHHHHHHHHHHH---HcCCEEEECCc
Confidence 999888776554 35777776543
No 177
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.29 E-value=0.00035 Score=66.01 Aligned_cols=98 Identities=19% Similarity=0.187 Sum_probs=65.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCcccHHHHHHCCceecCCCc-CCHHhhhccCCEEE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYETISGSDLVL 183 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~t~-~~~~e~i~~ADIVi 183 (316)
.+++| +++.|+|.|.+|.+++..|... | .+|.+..|+.++..+.+.+.+... .... .+..+.+.++|+||
T Consensus 119 ~~~~~-k~vlVlGaGg~a~ai~~aL~~~------g~~~V~v~~R~~~~a~~l~~~~~~~~-~~~~~~~~~~~~~~~DivI 190 (278)
T PRK00258 119 VDLKG-KRILILGAGGAARAVILPLLDL------GVAEITIVNRTVERAEELAKLFGALG-KAELDLELQEELADFDLII 190 (278)
T ss_pred CCCCC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhcc-ceeecccchhccccCCEEE
Confidence 36788 9999999999999999999988 8 578888887655444444432110 0001 13346778999999
Q ss_pred EcccCchHHH--HHHHHHhcCCCCcEEEEe
Q 021218 184 LLISDAAQAD--NYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 184 Lavp~~~~~~--vi~ei~~~mk~gaiLid~ 211 (316)
-++|...... ...-....++++.++.|+
T Consensus 191 naTp~g~~~~~~~~~~~~~~l~~~~~v~Di 220 (278)
T PRK00258 191 NATSAGMSGELPLPPLPLSLLRPGTIVYDM 220 (278)
T ss_pred ECCcCCCCCCCCCCCCCHHHcCCCCEEEEe
Confidence 9999775431 101112346778888877
No 178
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=97.29 E-value=0.00094 Score=57.71 Aligned_cols=76 Identities=14% Similarity=0.141 Sum_probs=59.5
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| ++|.|||-+ ..|..++..|.+. |..|.+..++. .++++.+++||+|+.
T Consensus 24 ~~~~g-k~v~VvGrs~~vG~pla~lL~~~------gatV~~~~~~t-------------------~~l~~~v~~ADIVvs 77 (140)
T cd05212 24 VRLDG-KKVLVVGRSGIVGAPLQCLLQRD------GATVYSCDWKT-------------------IQLQSKVHDADVVVV 77 (140)
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEeCCCC-------------------cCHHHHHhhCCEEEE
Confidence 47899 999999955 7899999999888 88877665321 257788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-.. +++ .+++|||++++|++
T Consensus 78 Atg~~~---~i~--~~~ikpGa~Vidvg 100 (140)
T cd05212 78 GSPKPE---KVP--TEWIKPGATVINCS 100 (140)
T ss_pred ecCCCC---ccC--HHHcCCCCEEEEcC
Confidence 998663 344 34589999998765
No 179
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.29 E-value=0.00063 Score=66.90 Aligned_cols=94 Identities=19% Similarity=0.265 Sum_probs=63.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHH---CCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~---~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
++++|||.|.||..+++.+..-. .+ +|.++.|..++..+.+++ .|+... ...+.++++++||+|+.+++
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr-----~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~--~~~~~~~av~~ADIIvtaT~ 202 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALL-----GIEEIRLYDIDPAATAKLARNLAGPGLRIV--ACRSVAEAVEGADIITTVTA 202 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhC-----CceEEEEEeCCHHHHHHHHHHHHhcCCcEE--EeCCHHHHHhcCCEEEEecC
Confidence 78999999999999998887641 33 677777765543333322 233210 14689999999999999997
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
......+++. +.+|||+.|.-++..
T Consensus 203 S~~~~Pvl~~--~~lkpG~hV~aIGs~ 227 (346)
T PRK07589 203 DKTNATILTD--DMVEPGMHINAVGGD 227 (346)
T ss_pred CCCCCceecH--HHcCCCcEEEecCCC
Confidence 5432234442 356899987765543
No 180
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.28 E-value=0.0006 Score=66.08 Aligned_cols=89 Identities=18% Similarity=0.229 Sum_probs=63.3
Q ss_pred CEEEEEcccchHHHHHHHHHh-hhhhhcCCc-EEEEEecCCcccHHHHHHC----CceecCCCcCCHHhhhccCCEEEEc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRD-SLAEAKSDI-VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~-~~~~~g~G~-~Vivg~r~~~~s~~~A~~~----G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
++++|||.|.||..+++.+.. . +. +|.+..|..++..+.+.+. |+... ...+.++++++||+|+.+
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~------~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~--~~~~~~~av~~aDiVvta 201 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVR------DIRSARIWARDSAKAEALALQLSSLLGIDVT--AATDPRAAMSGADIIVTT 201 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhC------CccEEEEECCCHHHHHHHHHHHHhhcCceEE--EeCCHHHHhccCCEEEEe
Confidence 799999999999999999975 3 54 5777877765555444432 44211 145788999999999999
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+|... .++. .+.+++|+++..++
T Consensus 202 T~s~~--p~i~--~~~l~~g~~i~~vg 224 (326)
T TIGR02992 202 TPSET--PILH--AEWLEPGQHVTAMG 224 (326)
T ss_pred cCCCC--cEec--HHHcCCCcEEEeeC
Confidence 98754 3443 12478998877554
No 181
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.28 E-value=0.0014 Score=59.49 Aligned_cols=89 Identities=12% Similarity=0.097 Sum_probs=60.9
Q ss_pred ccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhhccC
Q 021218 101 FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGS 179 (316)
Q Consensus 101 F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~t~~~~~e~i~~A 179 (316)
|+++ -+|+| +++.|||.|.+|...++.|.+. |.+|.+..+.-.+........| +...... -.++.+.++
T Consensus 2 ~Pl~-l~l~~-k~vLVIGgG~va~~ka~~Ll~~------ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~--~~~~~l~~a 71 (202)
T PRK06718 2 MPLM-IDLSN-KRVVIVGGGKVAGRRAITLLKY------GAHIVVISPELTENLVKLVEEGKIRWKQKE--FEPSDIVDA 71 (202)
T ss_pred cceE-EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEcCCCCHHHHHHHhCCCEEEEecC--CChhhcCCc
Confidence 4544 68999 9999999999999999999998 8887776654333333333333 2211111 123457899
Q ss_pred CEEEEcccCchHHHHHHHHH
Q 021218 180 DLVLLLISDAAQADNYEKIF 199 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~ 199 (316)
|+||.++.+....+.+.+..
T Consensus 72 dlViaaT~d~elN~~i~~~a 91 (202)
T PRK06718 72 FLVIAATNDPRVNEQVKEDL 91 (202)
T ss_pred eEEEEcCCCHHHHHHHHHHH
Confidence 99999999998877665443
No 182
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.28 E-value=0.00034 Score=65.68 Aligned_cols=94 Identities=19% Similarity=0.095 Sum_probs=62.1
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC---CceecCCCcCCHHh-hhccCCEEE
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYE-TISGSDLVL 183 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~---G~~~~~~t~~~~~e-~i~~ADIVi 183 (316)
.++ +++.|+|.|.+|.+++..|.+. |.+|.+.+|..++..+.+.+. |... ..+.++ ...++|+||
T Consensus 115 ~~~-k~vliiGaGg~g~aia~~L~~~------g~~v~v~~R~~~~~~~la~~~~~~~~~~----~~~~~~~~~~~~DivI 183 (270)
T TIGR00507 115 RPN-QRVLIIGAGGAARAVALPLLKA------DCNVIIANRTVSKAEELAERFQRYGEIQ----AFSMDELPLHRVDLII 183 (270)
T ss_pred ccC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHhhcCceE----EechhhhcccCccEEE
Confidence 567 9999999999999999999988 888888877655444444332 2111 112332 346899999
Q ss_pred EcccCchHHHHHH-H-HHhcCCCCcEEEEeC
Q 021218 184 LLISDAAQADNYE-K-IFSCMKPNSILGLSH 212 (316)
Q Consensus 184 Lavp~~~~~~vi~-e-i~~~mk~gaiLid~a 212 (316)
.++|......+-+ . -.+.++++.+++|+.
T Consensus 184 natp~gm~~~~~~~~~~~~~l~~~~~v~D~~ 214 (270)
T TIGR00507 184 NATSAGMSGNIDEPPVPAEKLKEGMVVYDMV 214 (270)
T ss_pred ECCCCCCCCCCCCCCCCHHHcCCCCEEEEec
Confidence 9999753221100 0 123477888888874
No 183
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.27 E-value=0.00075 Score=65.68 Aligned_cols=131 Identities=19% Similarity=0.124 Sum_probs=82.3
Q ss_pred cccccchhhhhhcccc-chhhHHhhcCCccccccccccCCC--CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEec
Q 021218 72 LDFETSVFKKDMISLA-DRDEYIVRGGRDLFNLLPDAFNGI--NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (316)
Q Consensus 72 ~~~~~~~~~~~~~~l~-~~~e~vv~~G~w~F~~~~~~l~G~--kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r 148 (316)
|+--+.++-..-+... .|-|.. ++|+=-+ ..-++|+ -++.|||.|..|..-|+-+... |-+|.+.+.
T Consensus 130 LaPMSeVAGrla~q~Ga~~lek~-~GG~Gvl---lgGvpGV~~~kv~iiGGGvvgtnaAkiA~gl------gA~Vtild~ 199 (371)
T COG0686 130 LAPMSEVAGRLAAQAGAYYLEKT-NGGKGVL---LGGVPGVLPAKVVVLGGGVVGTNAAKIAIGL------GADVTILDL 199 (371)
T ss_pred cchHHHHhhhHHHHHHHHHHHhc-cCCceeE---ecCCCCCCCccEEEECCccccchHHHHHhcc------CCeeEEEec
Confidence 4444445543333333 334443 6665533 1223333 5899999999999999887766 778888887
Q ss_pred CCcccHHHHHHCCcee--cCCCcCCHHhhhccCCEEEEcc--cCchHHHHH-HHHHhcCCCCcEEEEeC
Q 021218 149 KGSRSFAEARAAGFTE--ENGTLGDIYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (316)
Q Consensus 149 ~~~~s~~~A~~~G~~~--~~~t~~~~~e~i~~ADIViLav--p~~~~~~vi-~ei~~~mk~gaiLid~a 212 (316)
+..+....-...+... .-++...+++.++++|+||-++ |-....+++ ++..++||||++|+|++
T Consensus 200 n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 200 NIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 6443332222233221 1122345788999999999665 555556654 58899999999999885
No 184
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=97.27 E-value=0.0015 Score=62.59 Aligned_cols=108 Identities=17% Similarity=0.194 Sum_probs=81.4
Q ss_pred HHCCceecCCCcCCHHhhhccCCEEEEcccCch-HHHHHHHHHhcCCCCcEEEEeCCch---hh-hhhccccCCCCCccE
Q 021218 158 RAAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---LG-HLQSMGLDFPKNIGV 232 (316)
Q Consensus 158 ~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~-~~~vi~ei~~~mk~gaiLid~aGv~---l~-~l~~~~~~~~~~i~v 232 (316)
+..|+.. +.|..|+++++|++|+=+|-.. +.++++++.++++.|++|...+-+. +- .++. .=++++.+
T Consensus 125 EdaGvkV----tsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le~---l~R~DvgI 197 (342)
T PRK00961 125 EDLGLKV----TTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFKD---LGRDDLNV 197 (342)
T ss_pred HHcCceE----ecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHHH---hCcccCCe
Confidence 3467764 4577889999999999999988 5789999999999999999887664 21 2332 22679999
Q ss_pred EEeccCCCchhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 233 I~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
...|| +..+++ .|+.+. -....+++.++...+|.++.|..
T Consensus 198 sS~HP-aaVPgt-----~Gq~~i---------~egyAtEEqI~klveL~~sa~k~ 237 (342)
T PRK00961 198 TSYHP-GAVPEM-----KGQVYI---------AEGYADEEAVEKLYEIGKKARGN 237 (342)
T ss_pred eccCC-CCCCCC-----CCceec---------ccccCCHHHHHHHHHHHHHhCCC
Confidence 99999 333333 143222 25588999999999999999953
No 185
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=97.25 E-value=0.0015 Score=57.76 Aligned_cols=77 Identities=17% Similarity=0.198 Sum_probs=53.4
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| |++.|||-+ ..|..++..|.+. |..|.+...+ ..++++.+++||+||.
T Consensus 32 ~~l~G-k~v~VvGrs~~VG~Pla~lL~~~------~atVt~~h~~-------------------T~~l~~~~~~ADIVVs 85 (160)
T PF02882_consen 32 IDLEG-KKVVVVGRSNIVGKPLAMLLLNK------GATVTICHSK-------------------TKNLQEITRRADIVVS 85 (160)
T ss_dssp -STTT--EEEEE-TTTTTHHHHHHHHHHT------T-EEEEE-TT-------------------SSSHHHHHTTSSEEEE
T ss_pred CCCCC-CEEEEECCcCCCChHHHHHHHhC------CCeEEeccCC-------------------CCcccceeeeccEEee
Confidence 47999 999999987 6999999999998 8877665433 1267788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
++.-... ++ .+++|+|++|+|++-
T Consensus 86 a~G~~~~---i~--~~~ik~gavVIDvG~ 109 (160)
T PF02882_consen 86 AVGKPNL---IK--ADWIKPGAVVIDVGI 109 (160)
T ss_dssp -SSSTT----B---GGGS-TTEEEEE--C
T ss_pred eeccccc---cc--cccccCCcEEEecCC
Confidence 9975432 33 346899999999864
No 186
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.23 E-value=0.002 Score=63.04 Aligned_cols=95 Identities=14% Similarity=0.192 Sum_probs=59.0
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC-ceec-CCCcCCHH-hhhccCCEEEEcc
Q 021218 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEE-NGTLGDIY-ETISGSDLVLLLI 186 (316)
Q Consensus 111 ~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G-~~~~-~~t~~~~~-e~i~~ADIViLav 186 (316)
|++|+|||. |.+|..+++.|.+. .+.+++...++.+.....+...+ +... +..+.+.+ +..+++|+|++|+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~-----p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~al 76 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNH-----PEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLAL 76 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECC
Confidence 479999996 99999999998864 13455444443222211222222 1100 00112222 2457899999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
|.....++..+..+ .|..|+|.++
T Consensus 77 P~~~~~~~v~~a~~---aG~~VID~S~ 100 (343)
T PRK00436 77 PHGVSMDLAPQLLE---AGVKVIDLSA 100 (343)
T ss_pred CcHHHHHHHHHHHh---CCCEEEECCc
Confidence 99988888777644 5888998776
No 187
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.22 E-value=0.0026 Score=61.65 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=64.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhhhc-----cCCEEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETIS-----GSDLVLL 184 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~--~s~~~A~~~G~~~~~~t~~~~~e~i~-----~ADIViL 184 (316)
.+|||||.|++|..++..+.+. .+.++....+.+. ...+.+++.|+.. +..+.+++++ +.|+|+.
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~-----~~velvAVvdid~es~gla~A~~~Gi~~---~~~~ie~LL~~~~~~dIDiVf~ 76 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRS-----EHLEPGAMVGIDPESDGLARARRLGVAT---SAEGIDGLLAMPEFDDIDIVFD 76 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcC-----CCcEEEEEEeCChhhHHHHHHHHcCCCc---ccCCHHHHHhCcCCCCCCEEEE
Confidence 6899999999999988777764 1456554444333 3346678888752 1356788874 5899999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
++|...+.++..... +.|+.++|-..
T Consensus 77 AT~a~~H~e~a~~a~---eaGk~VID~sP 102 (302)
T PRK08300 77 ATSAGAHVRHAAKLR---EAGIRAIDLTP 102 (302)
T ss_pred CCCHHHHHHHHHHHH---HcCCeEEECCc
Confidence 999988888777654 35888887654
No 188
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.21 E-value=0.0019 Score=50.53 Aligned_cols=67 Identities=18% Similarity=0.193 Sum_probs=49.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
..+++ ++++|+|.|.+|..++..+.+. +. ++.+.++ |+++-
T Consensus 19 ~~~~~-~~v~i~G~G~~g~~~a~~l~~~------~~~~v~v~~r-------------------------------di~i~ 60 (86)
T cd05191 19 KSLKG-KTVVVLGAGEVGKGIAKLLADE------GGKKVVLCDR-------------------------------DILVT 60 (86)
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcC-------------------------------CEEEE
Confidence 45788 9999999999999999999887 53 4444332 99999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+++...... ++....++++.+|+|.+
T Consensus 61 ~~~~~~~~~--~~~~~~~~~~~~v~~~a 86 (86)
T cd05191 61 ATPAGVPVL--EEATAKINEGAVVIDLA 86 (86)
T ss_pred cCCCCCCch--HHHHHhcCCCCEEEecC
Confidence 998755432 23455678898888753
No 189
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.20 E-value=0.0022 Score=59.25 Aligned_cols=94 Identities=20% Similarity=0.199 Sum_probs=65.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc---EEEEEecCC----ccc-------HHHHHHCCceecCCCcCC
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKG----SRS-------FAEARAAGFTEENGTLGD 171 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~---~Vivg~r~~----~~s-------~~~A~~~G~~~~~~t~~~ 171 (316)
..+++ ++|.|+|.|.+|.++|..|.+. |. ++++.+|++ .+. .+.++..+... ...+
T Consensus 21 ~~l~~-~rvlvlGAGgAg~aiA~~L~~~------G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~~~~ 90 (226)
T cd05311 21 KKIEE-VKIVINGAGAAGIAIARLLLAA------GAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---TGGT 90 (226)
T ss_pred CCccC-CEEEEECchHHHHHHHHHHHHc------CcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---ccCC
Confidence 46889 9999999999999999999887 76 477788773 221 22344432111 0126
Q ss_pred HHhhhccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 172 ~~e~i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+.++++++|+||-++|+.... ++..+.|+++.++.+..
T Consensus 91 l~~~l~~~dvlIgaT~~G~~~---~~~l~~m~~~~ivf~ls 128 (226)
T cd05311 91 LKEALKGADVFIGVSRPGVVK---KEMIKKMAKDPIVFALA 128 (226)
T ss_pred HHHHHhcCCEEEeCCCCCCCC---HHHHHhhCCCCEEEEeC
Confidence 778889999999999965543 24555677788877654
No 190
>PRK06046 alanine dehydrogenase; Validated
Probab=97.20 E-value=0.00096 Score=64.65 Aligned_cols=91 Identities=20% Similarity=0.187 Sum_probs=59.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~----~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
+++||||.|.||..+++++... .+. +|.++++..++..+.+.+ .|+... ...+.+++++ +|+|+.|+
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~-----~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~-aDiVv~aT 201 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEV-----FDLEEVRVYDRTKSSAEKFVERMSSVVGCDVT--VAEDIEEACD-CDILVTTT 201 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhh-----CCceEEEEECCCHHHHHHHHHHHHhhcCceEE--EeCCHHHHhh-CCEEEEec
Confidence 7899999999999999998753 144 345555554333333332 243210 1357888887 99999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
|... .++. .+.+|+|+.|.-++..
T Consensus 202 ps~~--P~~~--~~~l~~g~hV~~iGs~ 225 (326)
T PRK06046 202 PSRK--PVVK--AEWIKEGTHINAIGAD 225 (326)
T ss_pred CCCC--cEec--HHHcCCCCEEEecCCC
Confidence 9753 3443 2346899988766544
No 191
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=97.19 E-value=0.0059 Score=60.01 Aligned_cols=180 Identities=17% Similarity=0.223 Sum_probs=104.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhc-CCcEEEEEecC---CcccHHHHHH-------CCceec------CCCcCCHHh
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAK-SDIVVKVGLRK---GSRSFAEARA-------AGFTEE------NGTLGDIYE 174 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g-~G~~Vivg~r~---~~~s~~~A~~-------~G~~~~------~~t~~~~~e 174 (316)
.+|+|||.|+=|.++|+.+...-.+.. +..+|..+.+. +.+.....+- ..+... --...|+.+
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~e 101 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVE 101 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHH
Confidence 799999999999999998887522211 12234333221 1110001100 000000 001568899
Q ss_pred hhccCCEEEEcccCchHHHHHHHHHhcCCCCcE-EEEeCCchhh-----------hhhccccCCCCCccEEEeccCCCch
Q 021218 175 TISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLLG-----------HLQSMGLDFPKNIGVIAVCPKGMGP 242 (316)
Q Consensus 175 ~i~~ADIViLavp~~~~~~vi~ei~~~mk~gai-Lid~aGv~l~-----------~l~~~~~~~~~~i~vI~vhPn~pg~ 242 (316)
++++||+++..+|.+-...+++++..++|++.. |+.+-|+... .+.. .+.-...++ .=||....
T Consensus 102 a~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~---~lgI~~~vL-~GaNiA~E 177 (372)
T KOG2711|consen 102 AAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHR---ALGIPCSVL-MGANIASE 177 (372)
T ss_pred HhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHH---HhCCCceee-cCCchHHH
Confidence 999999999999999999999999999999997 4477676432 1111 111112222 22322222
Q ss_pred h---------------------hHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCeeecChhHHHhhc
Q 021218 243 S---------------------VRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSD 301 (316)
Q Consensus 243 ~---------------------~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~~~tT~~~e~~~d 301 (316)
. ...+|.+ -++.+.+.+|++.-.+-=++.=..++|+.++--.+...-+++-
T Consensus 178 Va~~~f~e~tIg~~~~~~~~~~l~~lf~~--------p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaA 249 (372)
T KOG2711|consen 178 VANEKFCETTIGYKDKKEAGILLKKLFRT--------PYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAA 249 (372)
T ss_pred HHhccccceeEeccchhhcchHHHHHhCC--------CceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHH
Confidence 2 3334443 2455677777765555555555777777777666666666665
Q ss_pred ch
Q 021218 302 IF 303 (316)
Q Consensus 302 l~ 303 (316)
++
T Consensus 250 i~ 251 (372)
T KOG2711|consen 250 II 251 (372)
T ss_pred HH
Confidence 54
No 192
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.18 E-value=0.00088 Score=64.47 Aligned_cols=92 Identities=13% Similarity=0.137 Sum_probs=64.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~----~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
++++|||.|.||..+++.+..- ..+ +|.++.|..++..+.+.+ .|+..+ .+.+.++++++||||+.++
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v-----~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~--~~~~~~eav~~aDIV~taT 190 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASV-----YNPKRIRVYSRNFDHARAFAERFSKEFGVDIR--PVDNAEAALRDADTITSIT 190 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhc-----CCCCEEEEECCCHHHHHHHHHHHHHhcCCcEE--EeCCHHHHHhcCCEEEEec
Confidence 8999999999999999998874 134 677777775554443333 243211 1468999999999999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
+-.. .+++ .+.+|||+.|.-++..
T Consensus 191 ~s~~--P~~~--~~~l~pg~hV~aiGs~ 214 (301)
T PRK06407 191 NSDT--PIFN--RKYLGDEYHVNLAGSN 214 (301)
T ss_pred CCCC--cEec--HHHcCCCceEEecCCC
Confidence 9553 3443 2357899887766554
No 193
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=97.17 E-value=0.0027 Score=61.01 Aligned_cols=108 Identities=15% Similarity=0.199 Sum_probs=82.1
Q ss_pred HHCCceecCCCcCCHHhhhccCCEEEEcccCch-HHHHHHHHHhcCCCCcEEEEeCCch---h-hhhhccccCCCCCccE
Q 021218 158 RAAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---L-GHLQSMGLDFPKNIGV 232 (316)
Q Consensus 158 ~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~-~~~vi~ei~~~mk~gaiLid~aGv~---l-~~l~~~~~~~~~~i~v 232 (316)
+..|+.. +.|..|+++++|++|+=+|-.. +.++++++.++++.|++|...+-+. + ..++. +. ++++.+
T Consensus 123 EdaGvkV----tsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE~--l~-R~DvgV 195 (340)
T TIGR01723 123 EDLGLKV----TTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFED--LG-REDLNV 195 (340)
T ss_pred HHcCceE----ecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHHh--hC-cccCCe
Confidence 3567764 4677889999999999999988 5789999999999999999887664 1 22332 22 579999
Q ss_pred EEeccCCCchhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 233 I~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
...|| +..+++ .|--|+ .....+++.++...+|.++.|..
T Consensus 196 sS~HP-aaVPgt------------~~q~Yi--~egyAtEEqI~klveL~~sa~k~ 235 (340)
T TIGR01723 196 TSYHP-GCVPEM------------KGQVYI--AEGYASEEAVNKLYELGKKARGK 235 (340)
T ss_pred eccCC-CCCCCC------------CCceEe--ecccCCHHHHHHHHHHHHHhCCC
Confidence 99999 333332 112343 37899999999999999999954
No 194
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.14 E-value=0.0029 Score=60.88 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=44.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHH----------CCceecCCCcCCHHhhhccCC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----------AGFTEENGTLGDIYETISGSD 180 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~----------~G~~~~~~t~~~~~e~i~~AD 180 (316)
+||+|||.|.||..+|..+... |. +|++.+.........+.. .+... ...+.++ +++||
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~------g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~---~t~d~~~-~~~aD 71 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK------ELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVT---GTNNYAD-TANSD 71 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc------CCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEE---ecCCHHH-hCCCC
Confidence 6899999999999999998887 65 766666543321112210 01111 1246665 79999
Q ss_pred EEEEccc
Q 021218 181 LVLLLIS 187 (316)
Q Consensus 181 IViLavp 187 (316)
+||++.+
T Consensus 72 iVIitag 78 (305)
T TIGR01763 72 IVVITAG 78 (305)
T ss_pred EEEEcCC
Confidence 9999998
No 195
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.13 E-value=0.0013 Score=64.30 Aligned_cols=92 Identities=22% Similarity=0.287 Sum_probs=66.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHH---HCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~---~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
..++|||.|.|+..+++.++.- +++ +|.++.|+.+...+.+. +.+... .....+.++++++||+|+-++|
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v-----~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~-v~a~~s~~~av~~aDiIvt~T~ 204 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAV-----RDIREIRVYSRDPEAAEAFAARLRKRGGEA-VGAADSAEEAVEGADIVVTATP 204 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhh-----CCccEEEEEcCCHHHHHHHHHHHHhhcCcc-ceeccCHHHHhhcCCEEEEecC
Confidence 7899999999999999999875 144 67778777655444442 232210 1235688999999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
... .++. .++++||..|.-+++
T Consensus 205 s~~--Pil~--~~~l~~G~hI~aiGa 226 (330)
T COG2423 205 STE--PVLK--AEWLKPGTHINAIGA 226 (330)
T ss_pred CCC--Ceec--HhhcCCCcEEEecCC
Confidence 887 3333 235779998887665
No 196
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.11 E-value=0.0019 Score=64.52 Aligned_cols=79 Identities=19% Similarity=0.179 Sum_probs=57.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCcccHHHHHHCC---c--eecC-CCcCCHHhhhccCCEEE
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAG---F--TEEN-GTLGDIYETISGSDLVL 183 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G-~~Vivg~r~~~~s~~~A~~~G---~--~~~~-~t~~~~~e~i~~ADIVi 183 (316)
|++|-|||+|.+|..+|..|.+. + .+|.+++|..++. +++.... + ..-| .......+++++.|+||
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~------~d~~V~iAdRs~~~~-~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN------GDGEVTIADRSKEKC-ARIAELIGGKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC------CCceEEEEeCCHHHH-HHHHhhccccceeEEecccChHHHHHHHhcCCEEE
Confidence 68999999999999999999888 6 7899998875433 3333332 1 1101 11234668899999999
Q ss_pred EcccCchHHHHHH
Q 021218 184 LLISDAAQADNYE 196 (316)
Q Consensus 184 Lavp~~~~~~vi~ 196 (316)
.+.|+.....+++
T Consensus 74 n~~p~~~~~~i~k 86 (389)
T COG1748 74 NAAPPFVDLTILK 86 (389)
T ss_pred EeCCchhhHHHHH
Confidence 9999998877664
No 197
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.10 E-value=0.0018 Score=61.48 Aligned_cols=79 Identities=23% Similarity=0.241 Sum_probs=56.6
Q ss_pred CCEEEEEcccchHH-HHHHHHHhhhhhhcCC--cEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhhcc--CCEEEE
Q 021218 111 INQIGVIGWGSQGP-AQAQNLRDSLAEAKSD--IVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLL 184 (316)
Q Consensus 111 ~kkIGIIG~G~mG~-AlA~~Lr~~~~~~g~G--~~Vi-vg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~--ADIViL 184 (316)
+++|||||+|.+++ ..+..+++. + .+++ +.+++.++..+.+++.|+.. ...+.++++++ .|+|++
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~------~~~~~~vav~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~iD~V~I 73 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAAL------GGGLELVAVVDRDPERAEAFAEEFGIAK---AYTDLEELLADPDIDAVYI 73 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhC------CCceEEEEEecCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEE
Confidence 37899999996664 578788776 4 3433 33344445566778888741 25689999886 599999
Q ss_pred cccCchHHHHHHHH
Q 021218 185 LISDAAQADNYEKI 198 (316)
Q Consensus 185 avp~~~~~~vi~ei 198 (316)
++|+..+.++..+-
T Consensus 74 atp~~~H~e~~~~A 87 (342)
T COG0673 74 ATPNALHAELALAA 87 (342)
T ss_pred cCCChhhHHHHHHH
Confidence 99999999877543
No 198
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=97.10 E-value=0.017 Score=53.77 Aligned_cols=144 Identities=15% Similarity=0.168 Sum_probs=84.8
Q ss_pred chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecC--C--------CcCCHHhhhccCCEEEEcccCch
Q 021218 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G--------TLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 121 ~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~--~--------t~~~~~e~i~~ADIViLavp~~~ 190 (316)
.||..+|..|.+. |++|.+..|. +..+.-++.|+...+ + ...+.++ +...|+|++++|-.+
T Consensus 1 aiG~~~a~~L~~~------G~~V~l~~r~--~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~ 71 (293)
T TIGR00745 1 AVGSLYGAYLARA------GHDVTLLARG--EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQ 71 (293)
T ss_pred CchHHHHHHHHhC------CCcEEEEecH--HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchh
Confidence 3788899999888 8888877774 233444555643211 1 0122333 678999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEE-EeCCch-hhhhhccccCCCCCccEEE------eccCCCchhhHHHHhcCccccCCCceEE
Q 021218 191 QADNYEKIFSCMKPNSILG-LSHGFL-LGHLQSMGLDFPKNIGVIA------VCPKGMGPSVRRLYVQGKEINGAGINSS 262 (316)
Q Consensus 191 ~~~vi~ei~~~mk~gaiLi-d~aGv~-l~~l~~~~~~~~~~i~vI~------vhPn~pg~~~r~lf~~G~e~~G~G~~~i 262 (316)
..+.++.+.+++.++++|+ ..-|+. ...+.. .++++ +++. +...+|+.. +..|.|...
T Consensus 72 ~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~---~~~~~-~v~~g~~~~~~~~~~pg~v---------~~~~~~~~~- 137 (293)
T TIGR00745 72 TEEAAALLLPLIGKNTKVLFLQNGLGHEERLRE---LLPAR-RILGGVVTHGAVREEPGVV---------HHAGLGATK- 137 (293)
T ss_pred HHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHH---HhCcc-CEEEEEEEEeeEEcCCcEE---------EEeccccEE-
Confidence 8889999999998888766 456764 334443 33432 3332 333344432 112233333
Q ss_pred EeeccCCCHHHHHHHHHHHHHcCCCC
Q 021218 263 FAVHQDVDGRATNVALGWSVALGSPF 288 (316)
Q Consensus 263 iap~~d~~~~a~e~a~~l~~alG~~~ 288 (316)
+...+... +..+.+.+++...|.+.
T Consensus 138 iG~~~~~~-~~~~~l~~~l~~~~~~~ 162 (293)
T TIGR00745 138 IGDYVGEN-EAVEALAELLNEAGIPA 162 (293)
T ss_pred EecCCCch-HHHHHHHHHHHhCCCCC
Confidence 44433222 44555666777777554
No 199
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.06 E-value=0.0014 Score=66.85 Aligned_cols=76 Identities=14% Similarity=0.145 Sum_probs=53.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
.+++| ++++|+|.|.+|.+++..+.+. |.++.+.+|...+..+.+...+... ....+.. .+.++|+||.|
T Consensus 328 ~~~~~-k~vlIiGaGgiG~aia~~L~~~------G~~V~i~~R~~~~~~~la~~~~~~~--~~~~~~~-~l~~~DiVIna 397 (477)
T PRK09310 328 IPLNN-QHVAIVGAGGAAKAIATTLARA------GAELLIFNRTKAHAEALASRCQGKA--FPLESLP-ELHRIDIIINC 397 (477)
T ss_pred CCcCC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhccce--echhHhc-ccCCCCEEEEc
Confidence 45678 9999999999999999999998 8888877776444334444332210 0011222 25789999999
Q ss_pred ccCchH
Q 021218 186 ISDAAQ 191 (316)
Q Consensus 186 vp~~~~ 191 (316)
+|....
T Consensus 398 tP~g~~ 403 (477)
T PRK09310 398 LPPSVT 403 (477)
T ss_pred CCCCCc
Confidence 998763
No 200
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.04 E-value=0.0015 Score=63.43 Aligned_cols=93 Identities=19% Similarity=0.179 Sum_probs=64.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHH---HHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEA---RAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A---~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
++++|||.|.||..+++.+..- ..+ +|.++.|..++..+.+ ++.|+... ...+.++++++||||+.+++
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v-----~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~--~~~~~~~av~~ADIV~taT~ 201 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNV-----TDCRQLWVWGRSETALEEYRQYAQALGFAVN--TTLDAAEVAHAANLIVTTTP 201 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhc-----CCCCEEEEECCCHHHHHHHHHHHHhcCCcEE--EECCHHHHhcCCCEEEEecC
Confidence 8999999999999999988764 133 6777877755544333 22243221 14578999999999999998
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCCch
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aGv~ 215 (316)
-.. .+++ .+.+|||+.|.-++...
T Consensus 202 s~~--P~~~--~~~l~~G~hi~~iGs~~ 225 (315)
T PRK06823 202 SRE--PLLQ--AEDIQPGTHITAVGADS 225 (315)
T ss_pred CCC--ceeC--HHHcCCCcEEEecCCCC
Confidence 543 4554 23578999887666543
No 201
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.02 E-value=0.0033 Score=59.08 Aligned_cols=153 Identities=12% Similarity=0.171 Sum_probs=97.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc----------ccHHHHHHCCceec----------CCCcCC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEE----------NGTLGD 171 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~----------~s~~~A~~~G~~~~----------~~t~~~ 171 (316)
.||+|+|.|.+|+++|..+... |++|..++-..+ +.....++.|.... -+++.+
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~------GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~ 77 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASS------GYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTS 77 (313)
T ss_pred cceeEeecccccchHHHHHhcc------CceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCcc
Confidence 5899999999999999999888 999887765322 11222233332210 023568
Q ss_pred HHhhhccCCEEEEcccCchHHH--HHHHHHhcCCCCcEEEEeC-CchhhhhhccccCCCCCccEEEeccCCCchhhHHHH
Q 021218 172 IYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILGLSH-GFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (316)
Q Consensus 172 ~~e~i~~ADIViLavp~~~~~~--vi~ei~~~mk~gaiLid~a-Gv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf 248 (316)
++|++++|=.|-=|+|..-..+ ++.++-..+.|..+|.-+. .+....+-. .+......+-+||--|- .|
T Consensus 78 l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~---gL~~k~q~lvaHPvNPP-----yf 149 (313)
T KOG2305|consen 78 LNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSA---GLINKEQCLVAHPVNPP-----YF 149 (313)
T ss_pred HHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhh---hhhhhhheeEecCCCCC-----cc
Confidence 9999999988888888665532 6666655566665554332 232222211 12234567788992221 11
Q ss_pred hcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCC
Q 021218 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (316)
Q Consensus 249 ~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~ 287 (316)
.. . .=+.|++.++++.++...++.+++|-+
T Consensus 150 iP--------L-vElVPaPwTsp~tVdrt~~lM~sigq~ 179 (313)
T KOG2305|consen 150 IP--------L-VELVPAPWTSPDTVDRTRALMRSIGQE 179 (313)
T ss_pred cc--------h-heeccCCCCChhHHHHHHHHHHHhCCC
Confidence 11 1 126889999999999999999999944
No 202
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.00 E-value=0.0016 Score=63.11 Aligned_cols=90 Identities=21% Similarity=0.257 Sum_probs=61.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHC----CceecCCCcCCHHhhhccCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~----G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
++++|||.|.+|.+++..+... .+. +|.++.|+.++..+.+.+. |+.. ....+.+++++++|+|+.++
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~-----~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v--~~~~d~~~al~~aDiVi~aT 205 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLV-----RPIREVRVWARDAAKAEAYAADLRAELGIPV--TVARDVHEAVAGADIIVTTT 205 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----CCCCEEEEEcCCHHHHHHHHHHHhhccCceE--EEeCCHHHHHccCCEEEEee
Confidence 8999999999999999988863 043 6777777655444444432 4321 11457889999999999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
|... .++.. ..+++|+.+..+.
T Consensus 206 ~s~~--p~i~~--~~l~~g~~v~~vg 227 (330)
T PRK08291 206 PSEE--PILKA--EWLHPGLHVTAMG 227 (330)
T ss_pred CCCC--cEecH--HHcCCCceEEeeC
Confidence 8753 34432 2367888766543
No 203
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.99 E-value=0.0047 Score=58.83 Aligned_cols=81 Identities=19% Similarity=0.149 Sum_probs=53.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh-hccCCEEEEcccCch
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~-i~~ADIViLavp~~~ 190 (316)
+||||||+|.||..+++.|.+-.. .++++....++.....+.... ... .+.+++++ ..+.|+|+=|.++++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~---~~~~l~~V~~~~~~~~~~~~~-~~~----~~~~l~~ll~~~~DlVVE~A~~~a 74 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAA---QPCQLAALTRNAADLPPALAG-RVA----LLDGLPGLLAWRPDLVVEAAGQQA 74 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCC---CceEEEEEecCCHHHHHHhhc-cCc----ccCCHHHHhhcCCCEEEECCCHHH
Confidence 799999999999999999875300 024544444444322211111 122 25678886 688999999999988
Q ss_pred HHHHHHHHHh
Q 021218 191 QADNYEKIFS 200 (316)
Q Consensus 191 ~~~vi~ei~~ 200 (316)
..+....++.
T Consensus 75 v~e~~~~iL~ 84 (267)
T PRK13301 75 IAEHAEGCLT 84 (267)
T ss_pred HHHHHHHHHh
Confidence 8887776654
No 204
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.99 E-value=0.0052 Score=58.89 Aligned_cols=67 Identities=18% Similarity=0.180 Sum_probs=46.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCC--cEEEEEecCCcccHHHHHHC-------C--ceecCCCcCCHHhhhccCC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARAA-------G--FTEENGTLGDIYETISGSD 180 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G--~~Vivg~r~~~~s~~~A~~~-------G--~~~~~~t~~~~~e~i~~AD 180 (316)
+||+|||.|.+|.++|..|... | .++++.+++.+.....+.+. + ... ...+. +.+++||
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~------g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i---~~~~~-~~l~~aD 70 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ------GIADELVLIDINEEKAEGEALDLEDALAFLPSPVKI---KAGDY-SDCKDAD 70 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEE---EcCCH-HHhCCCC
Confidence 5899999999999999999887 7 36777776554433333321 1 111 12233 4579999
Q ss_pred EEEEcccC
Q 021218 181 LVLLLISD 188 (316)
Q Consensus 181 IViLavp~ 188 (316)
+||+++..
T Consensus 71 IVIitag~ 78 (306)
T cd05291 71 IVVITAGA 78 (306)
T ss_pred EEEEccCC
Confidence 99999975
No 205
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.99 E-value=0.00076 Score=65.10 Aligned_cols=94 Identities=22% Similarity=0.301 Sum_probs=53.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHH---CCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~---~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
++++|||.|.||..+++.+...+ ++ +|.++.|+.++..+.+.+ .|+... .+.+.++++++||+|+.++|
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~-----~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~--~~~~~~~av~~aDii~taT~ 201 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVR-----PIKEVRVYSRSPERAEAFAARLRDLGVPVV--AVDSAEEAVRGADIIVTATP 201 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS-------SEEEEE-SSHHHHHHHHHHHHCCCTCEE--EESSHHHHHTTSSEEEE---
T ss_pred ceEEEECCCHHHHHHHHHHHHhC-----CceEEEEEccChhHHHHHHHhhccccccce--eccchhhhcccCCEEEEccC
Confidence 79999999999999999988741 34 677777765433332222 233211 25689999999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
-.....+++ .+.++||++|.-++..
T Consensus 202 s~~~~P~~~--~~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 202 STTPAPVFD--AEWLKPGTHINAIGSY 226 (313)
T ss_dssp -SSEEESB---GGGS-TT-EEEE-S-S
T ss_pred CCCCCcccc--HHHcCCCcEEEEecCC
Confidence 766323333 2357889888766544
No 206
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.98 E-value=0.0021 Score=61.75 Aligned_cols=76 Identities=16% Similarity=0.103 Sum_probs=59.7
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| +++.|||-| ..|..+|..|.+. |..|.+.... ..++.+.+++||+||.
T Consensus 153 i~l~G-k~vvVvGrs~~VG~Pla~lL~~~------gAtVtv~hs~-------------------t~~l~~~~~~ADIvV~ 206 (285)
T PRK14191 153 IEIKG-KDVVIIGASNIVGKPLAMLMLNA------GASVSVCHIL-------------------TKDLSFYTQNADIVCV 206 (285)
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCEEEEEeCC-------------------cHHHHHHHHhCCEEEE
Confidence 47899 999999999 9999999999888 8877765322 1256688999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-.. ++. .+++|+|++|+|++
T Consensus 207 AvG~p~---~i~--~~~vk~GavVIDvG 229 (285)
T PRK14191 207 GVGKPD---LIK--ASMVKKGAVVVDIG 229 (285)
T ss_pred ecCCCC---cCC--HHHcCCCcEEEEee
Confidence 997544 333 23469999999986
No 207
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.0072 Score=56.84 Aligned_cols=153 Identities=15% Similarity=0.062 Sum_probs=85.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHH----HHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA----RAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A----~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
+.+||||.|..|.+......+- ++..- + ..+++.+.+ +..+.. ..+.+...+-.++++.-+|
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~------~~~cs-~--i~srS~~~a~~LaE~~~a~-----p~d~~~~ael~~~vfv~vp 76 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHV------VVACS-A--ISSRSRDRAQNLAETYVAP-----PLDVAKSAELLLLVFVDVP 76 (289)
T ss_pred eEEEEeecchHHHHHHHHhcch------heeeh-h--hhhcCHHHHhhchhccCCC-----ccchhhChhhhceEEecch
Confidence 6799999999999954433322 33321 1 112333333 333322 2244444555678888888
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCCch-hhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeec
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHGFL-LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aGv~-l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~ 266 (316)
+..+.++... ...+||++|+.++|++ .+.+.. .-+.+.--...||++.-....+-..+= .+.-+.|+-.
T Consensus 77 d~~~s~vaa~--~~~rpg~iv~HcSga~~~~il~~---~gr~g~~~asiHP~f~Fsgl~edl~rl-----~d~~~~i~ea 146 (289)
T COG5495 77 DALYSGVAAT--SLNRPGTIVAHCSGANGSGILAP---LGRQGCIPASIHPAFSFSGLDEDLSRL-----KDTIFGITEA 146 (289)
T ss_pred HHHHHHHHHh--cccCCCeEEEEccCCCchhhhhh---hhhcCCcceeecccccccCCHHHHHhC-----cccEEEeecc
Confidence 7754444433 2357999999999986 323332 111233334599998877654433321 1222323333
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCeee
Q 021218 267 QDVDGRATNVALGWSVALGSPFTFA 291 (316)
Q Consensus 267 ~d~~~~a~e~a~~l~~alG~~~~~~ 291 (316)
++ .....++.|+..+|++..+.
T Consensus 147 D~---~g~ai~q~la~emgg~~f~V 168 (289)
T COG5495 147 DD---VGYAIVQSLALEMGGEPFCV 168 (289)
T ss_pred cc---cccHHHHHHHHHhCCCceee
Confidence 33 35667888999999986543
No 208
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=96.94 E-value=0.0027 Score=57.98 Aligned_cols=93 Identities=17% Similarity=0.148 Sum_probs=62.2
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCc--CC----HHhhhcc
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL--GD----IYETISG 178 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~--~~----~~e~i~~ 178 (316)
.+|+| |++.|||-+ ..|..+|..|.+. |..|.+.+.+.-.......... +... .+ +.+.+++
T Consensus 58 ~~l~G-K~vvVIGrS~iVGkPla~lL~~~------~AtVti~~~~~~~~~~~~~~~~----hs~t~~~~~~~~l~~~~~~ 126 (197)
T cd01079 58 NRLYG-KTITIINRSEVVGRPLAALLAND------GARVYSVDINGIQVFTRGESIR----HEKHHVTDEEAMTLDCLSQ 126 (197)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEEecCcccccccccccc----cccccccchhhHHHHHhhh
Confidence 37999 999999966 7899999999888 8888777433211100000000 0001 12 6788999
Q ss_pred CCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 179 ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
||+||.+++-.... +. .+++|+|++|+|++.
T Consensus 127 ADIVIsAvG~~~~~--i~--~d~ik~GavVIDVGi 157 (197)
T cd01079 127 SDVVITGVPSPNYK--VP--TELLKDGAICINFAS 157 (197)
T ss_pred CCEEEEccCCCCCc--cC--HHHcCCCcEEEEcCC
Confidence 99999999876531 22 345789999999874
No 209
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.94 E-value=0.0049 Score=60.36 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=58.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEE-EEecCCcccHHHHHHCCceec--CCCc--CCHHhhhccCCEEEEc
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEE--NGTL--GDIYETISGSDLVLLL 185 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vi-vg~r~~~~s~~~A~~~G~~~~--~~t~--~~~~e~i~~ADIViLa 185 (316)
++|+|||. |.+|..+++.|.+. .+.+++ +..++.+.........+.... +-.. .+.++.++++|+|++|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-----P~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~a 75 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-----PEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLA 75 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEEC
Confidence 58999997 99999999999864 134555 323222111111111221000 0001 2455666789999999
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
+|.....++..+..+ .|..|+|.++.
T Consensus 76 lP~~~s~~~~~~~~~---~G~~VIDlS~~ 101 (346)
T TIGR01850 76 LPHGVSAELAPELLA---AGVKVIDLSAD 101 (346)
T ss_pred CCchHHHHHHHHHHh---CCCEEEeCChh
Confidence 999988888877644 58889988763
No 210
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.93 E-value=0.0053 Score=59.08 Aligned_cols=70 Identities=19% Similarity=0.206 Sum_probs=44.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHHC--Ccee-c--CCCcCCHHhhhccCCEEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTE-E--NGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~~--G~~~-~--~~t~~~~~e~i~~ADIViL 184 (316)
|||+|||.|.+|.++|..|... |. ++.+.+++.......+... .... . .....+. +.+++||+|++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~------g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiVii 73 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR------GLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVI 73 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEE
Confidence 5899999999999999999988 73 6666665433222122211 1100 0 0001244 56899999999
Q ss_pred cccC
Q 021218 185 LISD 188 (316)
Q Consensus 185 avp~ 188 (316)
+.+.
T Consensus 74 ta~~ 77 (308)
T cd05292 74 TAGA 77 (308)
T ss_pred ccCC
Confidence 9985
No 211
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.92 E-value=0.0032 Score=55.05 Aligned_cols=87 Identities=17% Similarity=0.164 Sum_probs=58.6
Q ss_pred ccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhhccC
Q 021218 101 FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGS 179 (316)
Q Consensus 101 F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~t~~~~~e~i~~A 179 (316)
|+++ -+|+| ++|.|||.|.+|...++.|.+. |.+|.+....- .. ...+.+ +......+ .++-+.++
T Consensus 5 ~P~~-l~l~~-~~vlVvGGG~va~rka~~Ll~~------ga~V~VIsp~~--~~-~l~~l~~i~~~~~~~--~~~dl~~a 71 (157)
T PRK06719 5 YPLM-FNLHN-KVVVIIGGGKIAYRKASGLKDT------GAFVTVVSPEI--CK-EMKELPYITWKQKTF--SNDDIKDA 71 (157)
T ss_pred cceE-EEcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCcc--CH-HHHhccCcEEEeccc--ChhcCCCc
Confidence 5544 69999 9999999999999999999998 88876664321 12 222222 22111111 12347899
Q ss_pred CEEEEcccCchHHHHHHHHHh
Q 021218 180 DLVLLLISDAAQADNYEKIFS 200 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~~ 200 (316)
|+|+.++.+.+....+.+...
T Consensus 72 ~lViaaT~d~e~N~~i~~~a~ 92 (157)
T PRK06719 72 HLIYAATNQHAVNMMVKQAAH 92 (157)
T ss_pred eEEEECCCCHHHHHHHHHHHH
Confidence 999999999887776655443
No 212
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.92 E-value=0.0095 Score=48.03 Aligned_cols=93 Identities=24% Similarity=0.285 Sum_probs=59.7
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHh----hhccCCEEEEcccCc
Q 021218 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TISGSDLVLLLISDA 189 (316)
Q Consensus 114 IGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e----~i~~ADIViLavp~~ 189 (316)
|-|+|+|.+|..+++.|++. +.+|++.+++ +...+.+++.|+..-.+...+.+. -++++|.|++++++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~------~~~vvvid~d-~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG------GIDVVVIDRD-PERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDD 73 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT------TSEEEEEESS-HHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSH
T ss_pred eEEEcCCHHHHHHHHHHHhC------CCEEEEEECC-cHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCH
Confidence 56999999999999999998 7776655544 555778888885432222333322 357899999999988
Q ss_pred hHHHHHHHHHhcCCC-CcEEEEeCC
Q 021218 190 AQADNYEKIFSCMKP-NSILGLSHG 213 (316)
Q Consensus 190 ~~~~vi~ei~~~mk~-gaiLid~aG 213 (316)
...-.+-..+..+.+ ..++..+..
T Consensus 74 ~~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 74 EENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEESS
T ss_pred HHHHHHHHHHHHHCCCCeEEEEECC
Confidence 665544433333333 344544443
No 213
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.89 E-value=0.0062 Score=60.45 Aligned_cols=80 Identities=19% Similarity=0.183 Sum_probs=53.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-CCcee--cCCC-cCCHHhh-hccCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTE--ENGT-LGDIYET-ISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-~G~~~--~~~t-~~~~~e~-i~~ADIViLav 186 (316)
|+|.|+|+|.+|.++++.|++. |+++++.+++. ...+..++ .|+.. .|.+ ...++++ +.++|.|++++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~------g~~v~vid~~~-~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE------NNDVTVIDTDE-ERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEECCH-HHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence 5899999999999999999998 88877666543 33444443 44321 1111 1123444 78999999999
Q ss_pred cCchHHHHHHHH
Q 021218 187 SDAAQADNYEKI 198 (316)
Q Consensus 187 p~~~~~~vi~ei 198 (316)
+.......+...
T Consensus 74 ~~~~~n~~~~~~ 85 (453)
T PRK09496 74 DSDETNMVACQI 85 (453)
T ss_pred CChHHHHHHHHH
Confidence 987765544433
No 214
>PTZ00117 malate dehydrogenase; Provisional
Probab=96.89 E-value=0.0077 Score=58.31 Aligned_cols=71 Identities=18% Similarity=0.090 Sum_probs=44.5
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCcccHHHHHH--C-----CceecCCCcCCHHhhhccC
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARA--A-----GFTEENGTLGDIYETISGS 179 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G-~~Vivg~r~~~~s~~~A~~--~-----G~~~~~~t~~~~~e~i~~A 179 (316)
.+. +||+|||.|.||.+++..+... | .++.+.+.+.+.....+.+ . +....-....+.+ .+++|
T Consensus 3 ~~~-~KI~IIGaG~vG~~ia~~l~~~------~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~A 74 (319)
T PTZ00117 3 VKR-KKISMIGAGQIGSTVALLILQK------NLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDS 74 (319)
T ss_pred CCC-cEEEEECCCHHHHHHHHHHHHC------CCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCC
Confidence 355 8999999999999999988877 6 3665665543322211211 1 1000000123555 78999
Q ss_pred CEEEEcc
Q 021218 180 DLVLLLI 186 (316)
Q Consensus 180 DIViLav 186 (316)
|+|+++.
T Consensus 75 DiVVita 81 (319)
T PTZ00117 75 DVVVITA 81 (319)
T ss_pred CEEEECC
Confidence 9999999
No 215
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.85 E-value=0.0033 Score=60.28 Aligned_cols=76 Identities=17% Similarity=0.203 Sum_probs=59.9
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| +++.|||.+ ..|..+|..|... |..|.+..++. .++.+.+++||+||.
T Consensus 148 i~l~G-k~V~ViGrs~~vGrpla~lL~~~------~atVtv~hs~t-------------------~~L~~~~~~ADIvI~ 201 (279)
T PRK14178 148 ISIAG-KRAVVVGRSIDVGRPMAALLLNA------DATVTICHSKT-------------------ENLKAELRQADILVS 201 (279)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHhC------CCeeEEEecCh-------------------hHHHHHHhhCCEEEE
Confidence 47899 999999999 9999999999888 87777665431 257788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+++-. .++.+ +++|||++|+|++
T Consensus 202 Avgk~---~lv~~--~~vk~GavVIDVg 224 (279)
T PRK14178 202 AAGKA---GFITP--DMVKPGATVIDVG 224 (279)
T ss_pred CCCcc---cccCH--HHcCCCcEEEEee
Confidence 99733 34431 2269999999986
No 216
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.84 E-value=0.0029 Score=60.38 Aligned_cols=96 Identities=13% Similarity=0.083 Sum_probs=63.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCC----ceecCCCcCCHHhhhccCC
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG----FTEENGTLGDIYETISGSD 180 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G----~~~~~~t~~~~~e~i~~AD 180 (316)
..+.+ +++.|||.|-+|.+++..|... |. +|.+.+|..++..+.+++.+ ... -....+..+.++++|
T Consensus 123 ~~~~~-k~vlIlGaGGaaraia~aL~~~------G~~~I~I~nR~~~ka~~la~~l~~~~~~~~-~~~~~~~~~~~~~aD 194 (284)
T PRK12549 123 PDASL-ERVVQLGAGGAGAAVAHALLTL------GVERLTIFDVDPARAAALADELNARFPAAR-ATAGSDLAAALAAAD 194 (284)
T ss_pred cCccC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHHHhhCCCeE-EEeccchHhhhCCCC
Confidence 35678 9999999999999999999988 87 68888887655555554421 110 001224455778999
Q ss_pred EEEEcccCchHHH---HHHHHHhcCCCCcEEEEe
Q 021218 181 LVLLLISDAAQAD---NYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 181 IViLavp~~~~~~---vi~ei~~~mk~gaiLid~ 211 (316)
+||.++|...... -++ ...++++.++.|+
T Consensus 195 iVInaTp~Gm~~~~~~~~~--~~~l~~~~~v~Di 226 (284)
T PRK12549 195 GLVHATPTGMAKHPGLPLP--AELLRPGLWVADI 226 (284)
T ss_pred EEEECCcCCCCCCCCCCCC--HHHcCCCcEEEEe
Confidence 9999998764221 111 1236667777765
No 217
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.83 E-value=0.0015 Score=57.25 Aligned_cols=100 Identities=17% Similarity=0.120 Sum_probs=64.7
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCC-----------------
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG----------------- 167 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~----------------- 167 (316)
+..+.. .+|.|+|.|..|..-++.+... |.++++.+.. ....+.....+...-..
T Consensus 15 ~~~~~p-~~vvv~G~G~vg~gA~~~~~~l------Ga~v~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 86 (168)
T PF01262_consen 15 PGGVPP-AKVVVTGAGRVGQGAAEIAKGL------GAEVVVPDER-PERLRQLESLGAYFIEVDYEDHLERKDFDKADYY 86 (168)
T ss_dssp TTEE-T--EEEEESTSHHHHHHHHHHHHT------T-EEEEEESS-HHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCH
T ss_pred CCCCCC-eEEEEECCCHHHHHHHHHHhHC------CCEEEeccCC-HHHHHhhhcccCceEEEcccccccccccchhhhh
Confidence 455556 8999999999999999999998 9987776654 33334444444321000
Q ss_pred -----CcCCHHhhhccCCEEEEcc--cCchHHHHHH-HHHhcCCCCcEEEEeC
Q 021218 168 -----TLGDIYETISGSDLVLLLI--SDAAQADNYE-KIFSCMKPNSILGLSH 212 (316)
Q Consensus 168 -----t~~~~~e~i~~ADIViLav--p~~~~~~vi~-ei~~~mk~gaiLid~a 212 (316)
....+.+.++.+|+||.++ |......++. +..+.||++.+|+|++
T Consensus 87 ~~~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 87 EHPESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHCCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 0113567889999999643 5555667664 7888899999999985
No 218
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=96.83 E-value=0.0017 Score=64.32 Aligned_cols=91 Identities=21% Similarity=0.254 Sum_probs=70.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHH-HHHC-C--ceecCCCcCCHHhh---hccCCEEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAA-G--FTEENGTLGDIYET---ISGSDLVLL 184 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~-A~~~-G--~~~~~~t~~~~~e~---i~~ADIViL 184 (316)
..||.||++.||+.++.|+.+. |+.|.+++|..++.-+. +.+. | ++- ..+++|. ++.--.|+|
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~------Gf~v~~yNRT~skvD~flaneak~~~i~g----a~S~ed~v~klk~PR~iil 76 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADK------GFTVCAYNRTTSKVDEFLANEAKGTKIIG----AYSLEDFVSKLKKPRVIIL 76 (487)
T ss_pred cchhhhhHhhhhhhhhhccccc------CceEEEeccchHhHHHHHHHhhcCCcccC----CCCHHHHHHhcCCCcEEEE
Confidence 5699999999999999999999 99999999987654332 2111 2 221 3456654 567789999
Q ss_pred cccCchHHH-HHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQAD-NYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~-vi~ei~~~mk~gaiLid~a 212 (316)
.++-..-.+ +++++.++|-+|.+|+|-+
T Consensus 77 lvkAG~pVD~~I~~L~p~LekgDiIIDGG 105 (487)
T KOG2653|consen 77 LVKAGAPVDQFIEELVPYLEKGDIIIDGG 105 (487)
T ss_pred EeeCCCcHHHHHHHHHhhcCCCCEEEeCC
Confidence 999888776 8889999999999999865
No 219
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.82 E-value=0.0065 Score=56.06 Aligned_cols=82 Identities=20% Similarity=0.125 Sum_probs=56.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHH-HHHCCcee--cCCC-cCCHHhh-hccCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGFTE--ENGT-LGDIYET-ISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~-A~~~G~~~--~~~t-~~~~~e~-i~~ADIViLav 186 (316)
|+|.|||+|..|.++|+.|.+. |++|++.++..+...+. +.+.+... .|.+ ...+.++ +.++|+++.++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~------g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE------GHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC------CCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEee
Confidence 6899999999999999999999 99887777665433331 22233221 1222 1124455 78889999999
Q ss_pred cCchHHHHHHHHH
Q 021218 187 SDAAQADNYEKIF 199 (316)
Q Consensus 187 p~~~~~~vi~ei~ 199 (316)
..+.+.-++-.+.
T Consensus 75 ~~d~~N~i~~~la 87 (225)
T COG0569 75 GNDEVNSVLALLA 87 (225)
T ss_pred CCCHHHHHHHHHH
Confidence 9988877666544
No 220
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.82 E-value=0.0047 Score=52.94 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=44.5
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC-------ceecCCCcCCHHhhhccCCEEE
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-------FTEENGTLGDIYETISGSDLVL 183 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G-------~~~~~~t~~~~~e~i~~ADIVi 183 (316)
+||+|||. |++|.++|..|... +..-++.+.+++.......+.+.. ... .......+.+++||+|+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~----~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~--~i~~~~~~~~~~aDivv 74 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ----GLADEIVLIDINEDKAEGEALDLSHASAPLPSPV--RITSGDYEALKDADIVV 74 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT----TTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEE--EEEESSGGGGTTESEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhC----CCCCceEEeccCcccceeeehhhhhhhhhccccc--ccccccccccccccEEE
Confidence 68999999 99999999999887 122366666655333222222211 100 00124567889999999
Q ss_pred Ecc
Q 021218 184 LLI 186 (316)
Q Consensus 184 Lav 186 (316)
++.
T Consensus 75 ita 77 (141)
T PF00056_consen 75 ITA 77 (141)
T ss_dssp ETT
T ss_pred Eec
Confidence 988
No 221
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.80 E-value=0.005 Score=59.25 Aligned_cols=77 Identities=13% Similarity=0.100 Sum_probs=60.1
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~-mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| +++.|||.+. .|..++..|... |..|.+...+ +.++.+.+++||+||.
T Consensus 160 i~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvv~ 213 (287)
T PRK14176 160 VDIEG-KNAVIVGHSNVVGKPMAAMLLNR------NATVSVCHVF-------------------TDDLKKYTLDADILVV 213 (287)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHC------CCEEEEEecc-------------------CCCHHHHHhhCCEEEE
Confidence 47899 9999999998 999999999988 8777666432 2367788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
++--.. ++. .+++|+|++|+|++-
T Consensus 214 AvG~p~---~i~--~~~vk~gavVIDvGi 237 (287)
T PRK14176 214 ATGVKH---LIK--ADMVKEGAVIFDVGI 237 (287)
T ss_pred ccCCcc---ccC--HHHcCCCcEEEEecc
Confidence 775432 333 236899999999863
No 222
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.74 E-value=0.0038 Score=61.40 Aligned_cols=93 Identities=15% Similarity=0.170 Sum_probs=62.8
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHh-hhhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEE
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRD-SLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~-~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIV 182 (316)
.+|+| +++.|+|. |.||..+++.|.. . |. ++++..|...+..+.+.+.+.. ...+++++++++|+|
T Consensus 151 ~~l~~-k~VLVtGAtG~IGs~lar~L~~~~------gv~~lilv~R~~~rl~~La~el~~~----~i~~l~~~l~~aDiV 219 (340)
T PRK14982 151 IDLSK-ATVAVVGATGDIGSAVCRWLDAKT------GVAELLLVARQQERLQELQAELGGG----KILSLEEALPEADIV 219 (340)
T ss_pred cCcCC-CEEEEEccChHHHHHHHHHHHhhC------CCCEEEEEcCCHHHHHHHHHHhccc----cHHhHHHHHccCCEE
Confidence 47899 99999998 8999999999974 3 43 6666666544333444443211 134678899999999
Q ss_pred EEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 183 iLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+.++...... +++. ..++++.+++|.+
T Consensus 220 v~~ts~~~~~-~I~~--~~l~~~~~viDiA 246 (340)
T PRK14982 220 VWVASMPKGV-EIDP--ETLKKPCLMIDGG 246 (340)
T ss_pred EECCcCCcCC-cCCH--HHhCCCeEEEEec
Confidence 9888653321 1221 2347888899875
No 223
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.72 E-value=0.0059 Score=63.03 Aligned_cols=97 Identities=14% Similarity=0.107 Sum_probs=69.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec--CCC-------------cCCH
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------------LGDI 172 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~--~~t-------------~~~~ 172 (316)
..| .++.|||.|.+|...++.++.. |.+|++. +.++...+.+++.|.... +.. ..+.
T Consensus 163 ~pg-~kVlViGaG~iGL~Ai~~Ak~l------GA~V~a~-D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 163 VPP-AKVLVIGAGVAGLAAIGAAGSL------GAIVRAF-DTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred cCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEE-eCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhH
Confidence 456 8999999999999999999998 8865544 455667788989886510 100 0010
Q ss_pred --------HhhhccCCEEEEcccCch--HHHHH-HHHHhcCCCCcEEEEeC
Q 021218 173 --------YETISGSDLVLLLISDAA--QADNY-EKIFSCMKPNSILGLSH 212 (316)
Q Consensus 173 --------~e~i~~ADIViLavp~~~--~~~vi-~ei~~~mk~gaiLid~a 212 (316)
.+.++++|+||-++.-.. ...++ ++..+.||+|.+|+|++
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 122367999999996432 34554 78889999999999874
No 224
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.71 E-value=0.0053 Score=58.91 Aligned_cols=76 Identities=16% Similarity=0.135 Sum_probs=59.6
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| |++.|||-+ ..|..+|..|.+. +..|.+.... +.++.+.+++||+||.
T Consensus 153 i~l~G-k~vvViGrS~~VG~Pla~lL~~~------~AtVti~hs~-------------------T~~l~~~~~~ADIvV~ 206 (281)
T PRK14183 153 IDVKG-KDVCVVGASNIVGKPMAALLLNA------NATVDICHIF-------------------TKDLKAHTKKADIVIV 206 (281)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CcCHHHHHhhCCEEEE
Confidence 47899 999999988 8999999999887 7777655321 1267788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-.. ++. .+++|+|++|+|++
T Consensus 207 AvGkp~---~i~--~~~vk~gavvIDvG 229 (281)
T PRK14183 207 GVGKPN---LIT--EDMVKEGAIVIDIG 229 (281)
T ss_pred ecCccc---ccC--HHHcCCCcEEEEee
Confidence 997543 333 34578999999976
No 225
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.70 E-value=0.0057 Score=59.12 Aligned_cols=77 Identities=14% Similarity=0.140 Sum_probs=60.1
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| |++.|||-+ ..|..++..|.+. |..|.+...+ +.++.+.+++||+||.
T Consensus 154 i~l~G-k~vvVIGrS~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvIs 207 (297)
T PRK14186 154 IDIAG-KKAVVVGRSILVGKPLALMLLAA------NATVTIAHSR-------------------TQDLASITREADILVA 207 (297)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999955 7899999999988 8777665332 2367788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
++.-.. ++. .+++|+|++|+|++-
T Consensus 208 AvGkp~---~i~--~~~ik~gavVIDvGi 231 (297)
T PRK14186 208 AAGRPN---LIG--AEMVKPGAVVVDVGI 231 (297)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEecc
Confidence 998543 343 345789999999863
No 226
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.69 E-value=0.0052 Score=61.10 Aligned_cols=93 Identities=20% Similarity=0.195 Sum_probs=61.0
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHC-----Cce-ecCCCcCCHHhhhccCCEE
Q 021218 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-----GFT-EENGTLGDIYETISGSDLV 182 (316)
Q Consensus 110 G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~-----G~~-~~~~t~~~~~e~i~~ADIV 182 (316)
+-++++|||.|.||..+++.+.... ..+ +|.++.|..++..+.+.+. |+. . ..+.+.++++++||||
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~----~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v--~~~~s~~eav~~ADIV 227 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVC----PGIDTIKIKGRGQKSLDSFATWVAETYPQITNV--EVVDSIEEVVRGSDIV 227 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhc----CCccEEEEECCCHHHHHHHHHHHHHhcCCCceE--EEeCCHHHHHcCCCEE
Confidence 3379999999999999999887731 023 6777777755444333222 321 1 0146899999999999
Q ss_pred EEcccCchH----HHHHHHHHhcCCCCcEEEE
Q 021218 183 LLLISDAAQ----ADNYEKIFSCMKPNSILGL 210 (316)
Q Consensus 183 iLavp~~~~----~~vi~ei~~~mk~gaiLid 210 (316)
+.+++-... ..+++ .+.+|||+.|+-
T Consensus 228 vtaT~s~~~~~s~~Pv~~--~~~lkpG~hv~~ 257 (379)
T PRK06199 228 TYCNSGETGDPSTYPYVK--REWVKPGAFLLM 257 (379)
T ss_pred EEccCCCCCCCCcCcEec--HHHcCCCcEEec
Confidence 999974331 13443 234678887763
No 227
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.68 E-value=0.006 Score=58.74 Aligned_cols=76 Identities=16% Similarity=0.209 Sum_probs=59.4
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| |++.|||- ...|..++..|.+. +..|.+...+ +.++.+.+++||+||.
T Consensus 151 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVtichs~-------------------T~~l~~~~~~ADIvIs 204 (287)
T PRK14173 151 IPLAG-KEVVVVGRSNIVGKPLAALLLRE------DATVTLAHSK-------------------TQDLPAVTRRADVLVV 204 (287)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 99999995 47899999999887 7777655432 2367788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-.. ++. .+++|+|++|+|++
T Consensus 205 AvGkp~---~i~--~~~vk~GavVIDVG 227 (287)
T PRK14173 205 AVGRPH---LIT--PEMVRPGAVVVDVG 227 (287)
T ss_pred ecCCcC---ccC--HHHcCCCCEEEEcc
Confidence 997553 343 34578999999976
No 228
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.66 E-value=0.0064 Score=58.46 Aligned_cols=76 Identities=13% Similarity=0.151 Sum_probs=59.9
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| |++.|||-+ ..|..++..|.+. +..|.+...+ +.++.+.+++||+||.
T Consensus 155 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~~l~~~~~~ADIvIs 208 (284)
T PRK14177 155 IDVTG-KNAVVVGRSPILGKPMAMLLTEM------NATVTLCHSK-------------------TQNLPSIVRQADIIVG 208 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999955 8899999999988 8777665432 2367788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-... +. .+++|+|++|+|++
T Consensus 209 AvGk~~~---i~--~~~ik~gavVIDvG 231 (284)
T PRK14177 209 AVGKPEF---IK--ADWISEGAVLLDAG 231 (284)
T ss_pred eCCCcCc---cC--HHHcCCCCEEEEec
Confidence 9985543 33 34578999999986
No 229
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.63 E-value=0.0068 Score=58.10 Aligned_cols=76 Identities=20% Similarity=0.217 Sum_probs=59.7
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| |++.|||-+ ..|..++..|.+. +..|.+...+ +.++.+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~------~AtVt~chs~-------------------T~~l~~~~~~ADIvIs 207 (278)
T PRK14172 154 IDIEG-KEVVVIGRSNIVGKPVAQLLLNE------NATVTICHSK-------------------TKNLKEVCKKADILVV 207 (278)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999955 7899999999988 8777666432 2367788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-... +. .+++|+|++|+|++
T Consensus 208 AvGkp~~---i~--~~~ik~gavVIDvG 230 (278)
T PRK14172 208 AIGRPKF---ID--EEYVKEGAIVIDVG 230 (278)
T ss_pred cCCCcCc---cC--HHHcCCCcEEEEee
Confidence 9986543 33 24578999999984
No 230
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.61 E-value=0.007 Score=58.11 Aligned_cols=77 Identities=13% Similarity=0.180 Sum_probs=60.1
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| |++.|||-+ ..|..++..|.+. +..|.+...+ +.++.+.+++||+||.
T Consensus 152 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~ 205 (282)
T PRK14169 152 IDVAG-KRVVIVGRSNIVGRPLAGLMVNH------DATVTIAHSK-------------------TRNLKQLTKEADILVV 205 (282)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEECCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999955 7899999999888 8777665432 2267788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
++.-... +. .+++|+|++|+|++-
T Consensus 206 AvG~p~~---i~--~~~vk~GavVIDvGi 229 (282)
T PRK14169 206 AVGVPHF---IG--ADAVKPGAVVIDVGI 229 (282)
T ss_pred ccCCcCc---cC--HHHcCCCcEEEEeec
Confidence 9986543 33 245789999999863
No 231
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=96.60 E-value=0.0067 Score=58.19 Aligned_cols=76 Identities=17% Similarity=0.233 Sum_probs=60.3
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|.| +++.|||-+ ..|..+++-|... +..|.+.... +.++.+.+++||+|+.
T Consensus 152 i~l~G-k~~vVVGrS~iVGkPla~lL~~~------naTVtvcHs~-------------------T~~l~~~~k~ADIvv~ 205 (283)
T COG0190 152 IDLRG-KNVVVVGRSNIVGKPLALLLLNA------NATVTVCHSR-------------------TKDLASITKNADIVVV 205 (283)
T ss_pred CCCCC-CEEEEECCCCcCcHHHHHHHHhC------CCEEEEEcCC-------------------CCCHHHHhhhCCEEEE
Confidence 57899 999999988 4689999999987 8877766433 2367788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++--... +. .+++|+|++|+|++
T Consensus 206 AvG~p~~---i~--~d~vk~gavVIDVG 228 (283)
T COG0190 206 AVGKPHF---IK--ADMVKPGAVVIDVG 228 (283)
T ss_pred ecCCccc---cc--cccccCCCEEEecC
Confidence 9975443 22 46789999999986
No 232
>PRK11579 putative oxidoreductase; Provisional
Probab=96.59 E-value=0.011 Score=57.09 Aligned_cols=78 Identities=10% Similarity=0.169 Sum_probs=51.5
Q ss_pred CEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhhc--cCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~A-lA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~t~~~~~e~i~--~ADIViLavp 187 (316)
.+|||||+|.||.. .+..++.. .+.++....+.+.+. .+.+. +.. ...+.+++++ +.|+|++++|
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~-----~~~~l~av~d~~~~~--~~~~~~~~~----~~~~~~ell~~~~vD~V~I~tp 73 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGT-----PGLELAAVSSSDATK--VKADWPTVT----VVSEPQHLFNDPNIDLIVIPTP 73 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCCEEEEEECCCHHH--HHhhCCCCc----eeCCHHHHhcCCCCCEEEEcCC
Confidence 58999999999984 56666553 156655444444321 12233 222 2468999985 5799999999
Q ss_pred CchHHHHHHHHHh
Q 021218 188 DAAQADNYEKIFS 200 (316)
Q Consensus 188 ~~~~~~vi~ei~~ 200 (316)
+..+.++..+.++
T Consensus 74 ~~~H~~~~~~al~ 86 (346)
T PRK11579 74 NDTHFPLAKAALE 86 (346)
T ss_pred cHHHHHHHHHHHH
Confidence 9998887665443
No 233
>PRK10206 putative oxidoreductase; Provisional
Probab=96.59 E-value=0.0084 Score=58.40 Aligned_cols=83 Identities=12% Similarity=0.167 Sum_probs=53.0
Q ss_pred CCEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEccc
Q 021218 111 INQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (316)
Q Consensus 111 ~kkIGIIG~G~mG~A-lA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp 187 (316)
|.+|||||+|.++.. .+..+.... .+.++....+++.+..+.+.+.+... ...+.+|+++ +.|+|++++|
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~----~~~~l~av~d~~~~~~~~~~~~~~~~---~~~~~~ell~~~~iD~V~I~tp 73 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRK----DSWHVAHIFRRHAKPEEQAPIYSHIH---FTSDLDEVLNDPDVKLVVVCTH 73 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCC----CCEEEEEEEcCChhHHHHHHhcCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 368999999998753 345443320 04565544444443334455555321 2468999985 5799999999
Q ss_pred CchHHHHHHHHHh
Q 021218 188 DAAQADNYEKIFS 200 (316)
Q Consensus 188 ~~~~~~vi~ei~~ 200 (316)
+..+.++..+.+.
T Consensus 74 ~~~H~~~~~~al~ 86 (344)
T PRK10206 74 ADSHFEYAKRALE 86 (344)
T ss_pred chHHHHHHHHHHH
Confidence 9999887765543
No 234
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.59 E-value=0.011 Score=47.84 Aligned_cols=77 Identities=19% Similarity=0.179 Sum_probs=50.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
-+|+| +++.|||.|.+|..=++.|.+. |.+|.+..... ...+..+... ....++.+.++|+|+.+
T Consensus 3 l~l~~-~~vlVvGgG~va~~k~~~Ll~~------gA~v~vis~~~-----~~~~~~i~~~---~~~~~~~l~~~~lV~~a 67 (103)
T PF13241_consen 3 LDLKG-KRVLVVGGGPVAARKARLLLEA------GAKVTVISPEI-----EFSEGLIQLI---RREFEEDLDGADLVFAA 67 (103)
T ss_dssp E--TT--EEEEEEESHHHHHHHHHHCCC------TBEEEEEESSE-----HHHHTSCEEE---ESS-GGGCTTESEEEE-
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCch-----hhhhhHHHHH---hhhHHHHHhhheEEEec
Confidence 47899 9999999999999999999998 88887776543 1111222221 12345678999999999
Q ss_pred ccCchHHHHHHH
Q 021218 186 ISDAAQADNYEK 197 (316)
Q Consensus 186 vp~~~~~~vi~e 197 (316)
+.+....+.+.+
T Consensus 68 t~d~~~n~~i~~ 79 (103)
T PF13241_consen 68 TDDPELNEAIYA 79 (103)
T ss_dssp SS-HHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 998877664443
No 235
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.58 E-value=0.0066 Score=55.92 Aligned_cols=80 Identities=16% Similarity=0.042 Sum_probs=52.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc----------ccHHHHHHCCceecC-C-CcCCHH
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEEN-G-TLGDIY 173 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~----------~s~~~A~~~G~~~~~-~-t~~~~~ 173 (316)
.+|+| ++|.|.|+|++|..+|+.|.+. |..++...+.+. +..+...+.+-...- . ...+.+
T Consensus 19 ~~l~g-~~vaIqGfGnVG~~~a~~L~~~------G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (217)
T cd05211 19 DSLEG-LTVAVQGLGNVGWGLAKKLAEE------GGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGE 91 (217)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcc
Confidence 57899 9999999999999999999998 886655555444 344444443322100 0 001112
Q ss_pred hhh-ccCCEEEEcccCchHH
Q 021218 174 ETI-SGSDLVLLLISDAAQA 192 (316)
Q Consensus 174 e~i-~~ADIViLavp~~~~~ 192 (316)
+++ .+||+++-|.+.+.+.
T Consensus 92 ~l~~~~~DVlipaA~~~~i~ 111 (217)
T cd05211 92 AILGLDVDIFAPCALGNVID 111 (217)
T ss_pred cceeccccEEeeccccCccC
Confidence 222 3899999999877554
No 236
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.58 E-value=0.019 Score=52.35 Aligned_cols=83 Identities=17% Similarity=0.203 Sum_probs=57.1
Q ss_pred ccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhhccC
Q 021218 101 FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGS 179 (316)
Q Consensus 101 F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~t~~~~~e~i~~A 179 (316)
|+++ -+|+| +++.|||.|.+|..-++.|.+. |.+|.+......+.++...+.| +....+.. . .+.+.++
T Consensus 1 ~P~~-l~l~g-k~vlVvGgG~va~rk~~~Ll~~------ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~-~-~~dl~~~ 70 (205)
T TIGR01470 1 LPVF-ANLEG-RAVLVVGGGDVALRKARLLLKA------GAQLRVIAEELESELTLLAEQGGITWLARCF-D-ADILEGA 70 (205)
T ss_pred CCeE-EEcCC-CeEEEECcCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHHcCCEEEEeCCC-C-HHHhCCc
Confidence 4444 57999 9999999999999999999998 9887776654333333333333 32211221 2 3457899
Q ss_pred CEEEEcccCchHHH
Q 021218 180 DLVLLLISDAAQAD 193 (316)
Q Consensus 180 DIViLavp~~~~~~ 193 (316)
|+||.++.+.....
T Consensus 71 ~lVi~at~d~~ln~ 84 (205)
T TIGR01470 71 FLVIAATDDEELNR 84 (205)
T ss_pred EEEEECCCCHHHHH
Confidence 99999988876554
No 237
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=96.55 E-value=0.011 Score=56.47 Aligned_cols=66 Identities=29% Similarity=0.315 Sum_probs=40.2
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHH---HCC-ceecC---CCcCCHHhhhccCCEEEEc
Q 021218 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AAG-FTEEN---GTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 114 IGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~---~~G-~~~~~---~t~~~~~e~i~~ADIViLa 185 (316)
|+|||.|.||..+|..+... ++ +|++.+.+.+.....+. ... ..... ....+ .+.+++||+||++
T Consensus 1 I~IIGaG~vG~~ia~~la~~------~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d-~~~l~dADiVIit 73 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK------ELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTND-YEDIAGSDVVVIT 73 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC------CCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCC-HHHhCCCCEEEEe
Confidence 68999999999999988876 65 77777655332111111 110 00000 01234 4568999999997
Q ss_pred c
Q 021218 186 I 186 (316)
Q Consensus 186 v 186 (316)
.
T Consensus 74 ~ 74 (300)
T cd01339 74 A 74 (300)
T ss_pred c
Confidence 7
No 238
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.54 E-value=0.0081 Score=57.75 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=59.5
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| |++.|||-+ ..|..++..|.+. +..|.+...+ +.++.+.+++||+||.
T Consensus 153 i~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~ 206 (284)
T PRK14170 153 TQIEG-KRAVVIGRSNIVGKPVAQLLLNE------NATVTIAHSR-------------------TKDLPQVAKEADILVV 206 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47999 999999966 7899999999887 8777665322 2367888999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-... +. .+++|+|++++|++
T Consensus 207 AvG~~~~---i~--~~~vk~GavVIDvG 229 (284)
T PRK14170 207 ATGLAKF---VK--KDYIKPGAIVIDVG 229 (284)
T ss_pred ecCCcCc---cC--HHHcCCCCEEEEcc
Confidence 9986542 33 24578999999975
No 239
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=96.54 E-value=0.0077 Score=58.28 Aligned_cols=76 Identities=18% Similarity=0.137 Sum_probs=59.7
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| |++.|||-+ ..|..++..|.+. |..|.+...+ +.++++.+++||+||.
T Consensus 163 i~l~G-k~vvVIGRS~iVGkPla~lL~~~------~ATVtvchs~-------------------T~nl~~~~~~ADIvv~ 216 (299)
T PLN02516 163 IPIKG-KKAVVVGRSNIVGLPVSLLLLKA------DATVTVVHSR-------------------TPDPESIVREADIVIA 216 (299)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47999 999999965 7899999999887 8777766332 2367889999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-. .++. .+++|+|++|+|++
T Consensus 217 AvGk~---~~i~--~~~vk~gavVIDvG 239 (299)
T PLN02516 217 AAGQA---MMIK--GDWIKPGAAVIDVG 239 (299)
T ss_pred cCCCc---CccC--HHHcCCCCEEEEee
Confidence 99753 3444 34579999999986
No 240
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.54 E-value=0.0082 Score=57.72 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=59.0
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| |++.|||- ...|..+|..|... +..|.+...+ ..++.+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrS~iVG~Pla~lL~~~------~atVt~chs~-------------------t~~l~~~~~~ADIvI~ 207 (284)
T PRK14190 154 IDISG-KHVVVVGRSNIVGKPVGQLLLNE------NATVTYCHSK-------------------TKNLAELTKQADILIV 207 (284)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEEeCC-------------------chhHHHHHHhCCEEEE
Confidence 47899 99999995 58899999999887 7777665321 2267789999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-.. ++. .+++|+|++|+|++
T Consensus 208 AvG~p~---~i~--~~~ik~gavVIDvG 230 (284)
T PRK14190 208 AVGKPK---LIT--ADMVKEGAVVIDVG 230 (284)
T ss_pred ecCCCC---cCC--HHHcCCCCEEEEee
Confidence 996544 343 23468999999986
No 241
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.52 E-value=0.0056 Score=58.25 Aligned_cols=77 Identities=13% Similarity=0.036 Sum_probs=54.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCc---CCHHhhhccCCEE
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTL---GDIYETISGSDLV 182 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~t~---~~~~e~i~~ADIV 182 (316)
+++| +++.|||.|-+|.+++..|.+. |. +|.+.+|..++..+.+.+.+....-... .+..+.+.++|+|
T Consensus 122 ~~~~-k~vlvlGaGGaarai~~aL~~~------G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiV 194 (282)
T TIGR01809 122 PLAG-FRGLVIGAGGTSRAAVYALASL------GVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVL 194 (282)
T ss_pred ccCC-ceEEEEcCcHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEE
Confidence 5788 9999999999999999999988 86 6888888766555555543211000001 1233566889999
Q ss_pred EEcccCch
Q 021218 183 LLLISDAA 190 (316)
Q Consensus 183 iLavp~~~ 190 (316)
|-++|...
T Consensus 195 InaTp~g~ 202 (282)
T TIGR01809 195 VSTVPADV 202 (282)
T ss_pred EECCCCCC
Confidence 99999765
No 242
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.50 E-value=0.0094 Score=57.25 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=59.6
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| |++.|||-+ ..|..++..|.+. +..|.+...+ +.++.+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~------~ATVt~chs~-------------------T~dl~~~~k~ADIvIs 207 (282)
T PRK14180 154 IKTEG-AYAVVVGASNVVGKPVSQLLLNA------KATVTTCHRF-------------------TTDLKSHTTKADILIV 207 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHhhhcCEEEE
Confidence 47999 999999955 7899999999887 8777665432 1267788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-... +. .+++|+|++|+|++
T Consensus 208 AvGkp~~---i~--~~~vk~gavVIDvG 230 (282)
T PRK14180 208 AVGKPNF---IT--ADMVKEGAVVIDVG 230 (282)
T ss_pred ccCCcCc---CC--HHHcCCCcEEEEec
Confidence 9986543 33 24578999999985
No 243
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.48 E-value=0.0096 Score=57.37 Aligned_cols=76 Identities=18% Similarity=0.228 Sum_probs=59.2
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| |++.|||-+ ..|..++..|.+. +..|.+...+ ..++.+.+++||+||.
T Consensus 155 i~l~G-K~vvViGrS~iVGkPla~lL~~~------~ATVtichs~-------------------T~~L~~~~~~ADIvV~ 208 (288)
T PRK14171 155 PNLTG-KNVVIIGRSNIVGKPLSALLLKE------NCSVTICHSK-------------------THNLSSITSKADIVVA 208 (288)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 37899 999999965 7899999999887 8777665432 2367888999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-.. ++. .+++|+|++|+|++
T Consensus 209 AvGkp~---~i~--~~~vk~GavVIDvG 231 (288)
T PRK14171 209 AIGSPL---KLT--AEYFNPESIVIDVG 231 (288)
T ss_pred ccCCCC---ccC--HHHcCCCCEEEEee
Confidence 998442 443 24578999999975
No 244
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.48 E-value=0.019 Score=55.86 Aligned_cols=66 Identities=23% Similarity=0.217 Sum_probs=42.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCccc----HHHHHH---CC--ceecCCCcCCHHhhhccCCE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRS----FAEARA---AG--FTEENGTLGDIYETISGSDL 181 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s----~~~A~~---~G--~~~~~~t~~~~~e~i~~ADI 181 (316)
+||+|||.|.||.++|..+... |+ ++++.+...+.. .+.... .+ .... ...+. +.+++||+
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~------gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~--~~~d~-~~l~~aDi 77 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLK------NLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI--GTNNY-EDIAGSDV 77 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE--ECCCH-HHhCCCCE
Confidence 7999999999999999988877 75 655555443321 111111 11 1110 12355 57899999
Q ss_pred EEEcc
Q 021218 182 VLLLI 186 (316)
Q Consensus 182 ViLav 186 (316)
||++.
T Consensus 78 VI~ta 82 (321)
T PTZ00082 78 VIVTA 82 (321)
T ss_pred EEECC
Confidence 99976
No 245
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=96.46 E-value=0.0084 Score=59.41 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=58.9
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| |++.|||-+ ..|..++..|.+. +..|.+...+ +.++.+.+++|||||.
T Consensus 227 i~l~G-K~vvVIGRS~iVGkPLa~LL~~~------~ATVTicHs~-------------------T~nl~~~~r~ADIVIs 280 (364)
T PLN02616 227 VEIKG-KRAVVIGRSNIVGMPAALLLQRE------DATVSIVHSR-------------------TKNPEEITREADIIIS 280 (364)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHHC------CCeEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999955 7899999999887 7777665322 2367888999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-... +. .+++|+|++|+|++
T Consensus 281 AvGkp~~---i~--~d~vK~GAvVIDVG 303 (364)
T PLN02616 281 AVGQPNM---VR--GSWIKPGAVVIDVG 303 (364)
T ss_pred cCCCcCc---CC--HHHcCCCCEEEecc
Confidence 9975442 33 34578999999975
No 246
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.46 E-value=0.013 Score=58.66 Aligned_cols=93 Identities=17% Similarity=0.174 Sum_probs=61.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec--------------CC---CcCCHHh
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--------------NG---TLGDIYE 174 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~--------------~~---t~~~~~e 174 (316)
|+|.|||.|-.|...+..|.+. |++|+..+. ++... ...+.|...- .+ .+.|.++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~------GHeVv~vDi-d~~KV-~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL------GHEVVCVDI-DESKV-ELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc------CCeEEEEeC-CHHHH-HHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHH
Confidence 7899999999999999999999 998765543 22211 1122221100 00 1457888
Q ss_pred hhccCCEEEEcccCch---------HH-HHHHHHHhcCCCCcEEEEeC
Q 021218 175 TISGSDLVLLLISDAA---------QA-DNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 175 ~i~~ADIViLavp~~~---------~~-~vi~ei~~~mk~gaiLid~a 212 (316)
+++++|++++|+|-.. +. .+.+++.++++..++|+.=+
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KS 120 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKS 120 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcC
Confidence 9999999999997322 12 25567889887777766433
No 247
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=96.45 E-value=0.015 Score=57.04 Aligned_cols=90 Identities=17% Similarity=0.240 Sum_probs=56.5
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccH-HHHHHCCceec-----------CC---CcCCHHhhhcc
Q 021218 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEE-----------NG---TLGDIYETISG 178 (316)
Q Consensus 114 IGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~-~~A~~~G~~~~-----------~~---t~~~~~e~i~~ 178 (316)
|||+|+|.||..+++.+... .+++++...+.+.+.. ..|...|+... +. ...++++++.+
T Consensus 1 VaInG~GrIGr~varav~~~-----~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~ 75 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ-----DDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEK 75 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC-----CCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhc
Confidence 68999999999999998754 1567655555433321 33443342110 00 02468889999
Q ss_pred CCEEEEcccCchHHHHHHHHHhcCCCCcEEE
Q 021218 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 179 ADIViLavp~~~~~~vi~ei~~~mk~gaiLi 209 (316)
+|+|+.|+|......-.+ ....++++++++
T Consensus 76 vDiVve~Tp~~~~~~na~-~~~~~GakaVl~ 105 (333)
T TIGR01546 76 VDIVVDATPGGIGAKNKP-LYEKAGVKAIFQ 105 (333)
T ss_pred CCEEEECCCCCCChhhHH-HHHhCCcCEEEE
Confidence 999999999877654333 333466666554
No 248
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.41 E-value=0.02 Score=55.49 Aligned_cols=72 Identities=19% Similarity=0.248 Sum_probs=44.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHHCC----ceecCCCcCCHHhhhccCCEE
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG----FTEENGTLGDIYETISGSDLV 182 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~~G----~~~~~~t~~~~~e~i~~ADIV 182 (316)
.| +||+|||.|.+|.++|..|... |+ ++.+.+.+.+.....+.+.. +........+..+.+++||+|
T Consensus 5 ~~-~ki~iiGaG~vG~~~a~~l~~~------~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adiv 77 (315)
T PRK00066 5 QH-NKVVLVGDGAVGSSYAYALVNQ------GIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLV 77 (315)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEE
Confidence 56 8999999999999999999887 76 56666654433222222111 000000011234568999999
Q ss_pred EEccc
Q 021218 183 LLLIS 187 (316)
Q Consensus 183 iLavp 187 (316)
|++.-
T Consensus 78 Iitag 82 (315)
T PRK00066 78 VITAG 82 (315)
T ss_pred EEecC
Confidence 99764
No 249
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.41 E-value=0.011 Score=56.96 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=58.4
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHh--hhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEE
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRD--SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~--~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIV 182 (316)
.+|+| |++.|||- ...|..++.-|.+ . +..|.+...+ +.++.+.+++||+|
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~~~------~atVtvchs~-------------------T~~l~~~~k~ADIv 207 (284)
T PRK14193 154 VELAG-AHVVVIGRGVTVGRPIGLLLTRRSE------NATVTLCHTG-------------------TRDLAAHTRRADII 207 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHhhccC------CCEEEEeCCC-------------------CCCHHHHHHhCCEE
Confidence 47899 99999995 5889999999976 5 6666655332 23678899999999
Q ss_pred EEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 183 iLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
|.++.-.. ++. .+++|+|++|+|++
T Consensus 208 V~AvGkp~---~i~--~~~ik~GavVIDvG 232 (284)
T PRK14193 208 VAAAGVAH---LVT--ADMVKPGAAVLDVG 232 (284)
T ss_pred EEecCCcC---ccC--HHHcCCCCEEEEcc
Confidence 99998654 343 34578999999976
No 250
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=96.39 E-value=0.011 Score=58.37 Aligned_cols=76 Identities=18% Similarity=0.098 Sum_probs=58.7
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| |++.|||-+ ..|..+|..|.+. +..|.+...+ +.++.+.+++|||||.
T Consensus 210 i~l~G-K~vvVIGRS~iVGkPla~LL~~~------~ATVTicHs~-------------------T~nl~~~~~~ADIvIs 263 (345)
T PLN02897 210 VEIAG-KNAVVIGRSNIVGLPMSLLLQRH------DATVSTVHAF-------------------TKDPEQITRKADIVIA 263 (345)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999955 7899999999887 7777655332 1267788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-... +. .+++|+|++|+|++
T Consensus 264 AvGkp~~---v~--~d~vk~GavVIDVG 286 (345)
T PLN02897 264 AAGIPNL---VR--GSWLKPGAVVIDVG 286 (345)
T ss_pred ccCCcCc---cC--HHHcCCCCEEEEcc
Confidence 9986543 33 34578999999986
No 251
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.38 E-value=0.012 Score=56.59 Aligned_cols=76 Identities=18% Similarity=0.126 Sum_probs=59.1
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| +++.|||-+ ..|..++..|.+. +..|.+...+ +.++.+.+++||+||.
T Consensus 153 i~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~nl~~~~~~ADIvIs 206 (282)
T PRK14166 153 IDLEG-KDAVIIGASNIVGRPMATMLLNA------GATVSVCHIK-------------------TKDLSLYTRQADLIIV 206 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999965 7899999999887 7777655432 2267888999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-... +. .+++|+|++++|++
T Consensus 207 AvGkp~~---i~--~~~vk~GavVIDvG 229 (282)
T PRK14166 207 AAGCVNL---LR--SDMVKEGVIVVDVG 229 (282)
T ss_pred cCCCcCc---cC--HHHcCCCCEEEEec
Confidence 9975443 33 23578999999975
No 252
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.37 E-value=0.016 Score=60.71 Aligned_cols=87 Identities=11% Similarity=0.193 Sum_probs=59.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHH---h-hhccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---E-TISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~---e-~i~~ADIViLavp 187 (316)
..|-|+|+|.+|..+++.|++. |+++++-+ ++++..+.+++.|...--+...+.+ + -+++||.++++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvID-~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~ 473 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN------KMRITVLE-RDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCN 473 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC------CCCEEEEE-CCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeC
Confidence 4788999999999999999998 88865555 5566677788888543212222322 1 2678999999999
Q ss_pred CchHHHHHHHHHhcCCCC
Q 021218 188 DAAQADNYEKIFSCMKPN 205 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~g 205 (316)
+......+-.....+.|+
T Consensus 474 d~~~n~~i~~~~r~~~p~ 491 (601)
T PRK03659 474 EPEDTMKIVELCQQHFPH 491 (601)
T ss_pred CHHHHHHHHHHHHHHCCC
Confidence 987765443333333344
No 253
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=96.36 E-value=0.015 Score=52.77 Aligned_cols=101 Identities=17% Similarity=0.189 Sum_probs=59.7
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC--cccHH----------------HHH---H-CC
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG--SRSFA----------------EAR---A-AG 161 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~--~~s~~----------------~A~---~-~G 161 (316)
...|+. ++|+|||+|-||..+|..|... |+ ++.+.++.. ..++. .++ + ..
T Consensus 16 q~~L~~-~~V~IvG~GglGs~ia~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp 88 (200)
T TIGR02354 16 VQKLEQ-ATVAICGLGGLGSNVAINLARA------GIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINP 88 (200)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc------CCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCC
Confidence 467788 9999999999999999999988 76 455554430 10000 000 0 00
Q ss_pred -ceec--CC--CcCCHHhhhccCCEEEEcccCchHHH--HHHHHHhcCCCCcEEEEeCCc
Q 021218 162 -FTEE--NG--TLGDIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 162 -~~~~--~~--t~~~~~e~i~~ADIViLavp~~~~~~--vi~ei~~~mk~gaiLid~aGv 214 (316)
...+ +. +..+..+.++++|+|+-|+ ++...+ ++++....++...++. .+|+
T Consensus 89 ~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~-Dn~~~k~~l~~~~~~~~~~~~ii~-~~g~ 146 (200)
T TIGR02354 89 YTEIEAYDEKITEENIDKFFKDADIVCEAF-DNAEAKAMLVNAVLEKYKDKYLIA-ASGL 146 (200)
T ss_pred CCEEEEeeeeCCHhHHHHHhcCCCEEEECC-CCHHHHHHHHHHHHHHcCCCcEEE-Eecc
Confidence 0000 00 0123455788999999994 555444 4457777676544444 4554
No 254
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.35 E-value=0.012 Score=56.80 Aligned_cols=76 Identities=18% Similarity=0.168 Sum_probs=59.4
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| |++.|||-+ ..|..++..|.+. +..|.+...+ +.++.+.+++||+||.
T Consensus 156 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVt~chs~-------------------T~~l~~~~~~ADIvVs 209 (294)
T PRK14187 156 RNLSG-SDAVVIGRSNIVGKPMACLLLGE------NCTVTTVHSA-------------------TRDLADYCSKADILVA 209 (294)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHhhC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47999 999999955 7899999999988 8777655432 2367888999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-... +. .+++|+|++|+|++
T Consensus 210 AvGkp~~---i~--~~~ik~gaiVIDVG 232 (294)
T PRK14187 210 AVGIPNF---VK--YSWIKKGAIVIDVG 232 (294)
T ss_pred ccCCcCc---cC--HHHcCCCCEEEEec
Confidence 9986543 33 24578999999974
No 255
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.32 E-value=0.014 Score=58.14 Aligned_cols=71 Identities=17% Similarity=0.136 Sum_probs=45.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~ 191 (316)
++|.|||+|.+|.++|+.|++. |++|...+++. ..... .+... +......+...+++|+||.+.+....
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~------G~~V~g~D~~~-~~~~~---~~~~~-~~~~~~~~~~~~~~dlvV~s~gi~~~ 72 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQK------GVYVIGVDKSL-EALQS---CPYIH-ERYLENAEEFPEQVDLVVRSPGIKKE 72 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHC------CCEEEEEeCCc-cccch---hHHHh-hhhcCCcHHHhcCCCEEEECCCCCCC
Confidence 8999999999999999999998 98876555442 22211 11110 00011333445789999998865543
Q ss_pred HH
Q 021218 192 AD 193 (316)
Q Consensus 192 ~~ 193 (316)
.+
T Consensus 73 ~~ 74 (418)
T PRK00683 73 HP 74 (418)
T ss_pred cH
Confidence 33
No 256
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.32 E-value=0.014 Score=56.08 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=58.8
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
-+++| |++.|||-+ ..|..++.-|.+. +..|.+...+ +.++.+.+++||+||.
T Consensus 153 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~AtVtichs~-------------------T~nl~~~~~~ADIvI~ 206 (282)
T PRK14182 153 VDPKG-KRALVVGRSNIVGKPMAMMLLER------HATVTIAHSR-------------------TADLAGEVGRADILVA 206 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999955 7899999999887 7777665322 2367788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-. .++. .+++|+|++|+|++
T Consensus 207 AvGk~---~~i~--~~~ik~gaiVIDvG 229 (282)
T PRK14182 207 AIGKA---ELVK--GAWVKEGAVVIDVG 229 (282)
T ss_pred ecCCc---CccC--HHHcCCCCEEEEee
Confidence 99743 2444 24578999999975
No 257
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.31 E-value=0.054 Score=53.24 Aligned_cols=156 Identities=12% Similarity=0.038 Sum_probs=87.5
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcE-EEEEecCCcccHHHHHHCCceecCCCcC--CHHhhhccCCEEEEccc
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLG--DIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~-Vivg~r~~~~s~~~A~~~G~~~~~~t~~--~~~e~i~~ADIViLavp 187 (316)
++|||+| .|..|..+.+.|.++ .+.++ +.+.....+.-.+...-.|.... ... ......+++|+++.+.+
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~----~f~~~~~~~~AS~rSaG~~~~~f~~~~~~--v~~~~~~~~~~~~~Divf~~ag 75 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEER----HFPFEELVLLASARSAGKKYIEFGGKSIG--VPEDAADEFVFSDVDIVFFAAG 75 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhc----CCCcceEEEEecccccCCccccccCcccc--CccccccccccccCCEEEEeCc
Confidence 7999998 799999999999885 11222 33333222211111111222100 011 12235668999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCceEEEeecc
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~ 267 (316)
-....++.++..+ .|.+|+|.++.. ..-+|++. +.|--..... ..+.+ .| ++|+-.+
T Consensus 76 ~~~s~~~~p~~~~---~G~~VIdnsSa~---------Rm~~DVPL--VVPeVN~~~l-~~~~~------rg--~IianpN 132 (334)
T COG0136 76 GSVSKEVEPKAAE---AGCVVIDNSSAF---------RMDPDVPL--VVPEVNPEHL-IDYQK------RG--FIIANPN 132 (334)
T ss_pred hHHHHHHHHHHHH---cCCEEEeCCccc---------ccCCCCCE--ecCCcCHHHH-Hhhhh------CC--CEEECCC
Confidence 8887777777654 589999887642 11123333 3442111111 11111 23 5555555
Q ss_pred CCCHHHHHHHHHHHHHcCCCCeeecChhH
Q 021218 268 DVDGRATNVALGWSVALGSPFTFATTLEQ 296 (316)
Q Consensus 268 d~~~~a~e~a~~l~~alG~~~~~~tT~~~ 296 (316)
..+-..+-..+-|.+..|-+++..+|+..
T Consensus 133 Cst~~l~~aL~PL~~~~~i~~v~VsTyQA 161 (334)
T COG0136 133 CSTIQLVLALKPLHDAFGIKRVVVSTYQA 161 (334)
T ss_pred hHHHHHHHHHHHHHhhcCceEEEEEEeeh
Confidence 55555666667777878888888888753
No 258
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.31 E-value=0.0085 Score=57.55 Aligned_cols=96 Identities=19% Similarity=0.173 Sum_probs=67.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCcee---cCCCcCCHHhhhccCCE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTE---ENGTLGDIYETISGSDL 181 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~---~~~t~~~~~e~i~~ADI 181 (316)
.+.+| +++.|+|.|=.+.+++..|.+. |. ++.+.+|..++..+.+...+-.. ......+. +...++|+
T Consensus 122 ~~~~~-~~vlilGAGGAarAv~~aL~~~------g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~-~~~~~~dl 193 (283)
T COG0169 122 VDVTG-KRVLILGAGGAARAVAFALAEA------GAKRITVVNRTRERAEELADLFGELGAAVEAAALADL-EGLEEADL 193 (283)
T ss_pred cccCC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhccccccccccccc-ccccccCE
Confidence 56678 9999999999999999999999 85 78999998777666666554110 00001122 22226999
Q ss_pred EEEcccCchHHH----HHHHHHhcCCCCcEEEEe
Q 021218 182 VLLLISDAAQAD----NYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 182 ViLavp~~~~~~----vi~ei~~~mk~gaiLid~ 211 (316)
||-++|...... .+. ...++++.++.|+
T Consensus 194 iINaTp~Gm~~~~~~~~~~--~~~l~~~~~v~D~ 225 (283)
T COG0169 194 LINATPVGMAGPEGDSPVP--AELLPKGAIVYDV 225 (283)
T ss_pred EEECCCCCCCCCCCCCCCc--HHhcCcCCEEEEe
Confidence 999999877653 222 4567888888876
No 259
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.30 E-value=0.0056 Score=55.69 Aligned_cols=81 Identities=10% Similarity=0.203 Sum_probs=50.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhcc--CCEEEEcccCc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~--ADIViLavp~~ 189 (316)
.+|+|||+|.+|.++++.+... + .|++++...+.++..... ...|+.. ....++.+.+++ .|.|++++|..
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~--~--~g~~ivgv~D~d~~~~~~-~i~g~~v--~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFE--K--RGFKIVAAFDVDPEKIGT-KIGGIPV--YHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcc--c--CCcEEEEEEECChhhcCC-EeCCeEE--cCHHHHHHHHHHCCCCEEEEeCCch
Confidence 7899999999999999864321 1 277766555443321110 0123221 113456777754 99999999999
Q ss_pred hHHHHHHHHH
Q 021218 190 AQADNYEKIF 199 (316)
Q Consensus 190 ~~~~vi~ei~ 199 (316)
...++...+.
T Consensus 158 ~~~~i~~~l~ 167 (213)
T PRK05472 158 AAQEVADRLV 167 (213)
T ss_pred hHHHHHHHHH
Confidence 9877766554
No 260
>PRK04148 hypothetical protein; Provisional
Probab=96.29 E-value=0.046 Score=47.13 Aligned_cols=97 Identities=13% Similarity=0.108 Sum_probs=71.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhccCCEEEEcc
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i~~ADIViLav 186 (316)
.++ ++|.+||+| -|.++|..|.+. |++|+ +.+.++...+.+++.+.... +.-+....+.-+++|+|--.=
T Consensus 15 ~~~-~kileIG~G-fG~~vA~~L~~~------G~~Vi-aIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysir 85 (134)
T PRK04148 15 GKN-KKIVELGIG-FYFKVAKKLKES------GFDVI-VIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIR 85 (134)
T ss_pred ccC-CEEEEEEec-CCHHHHHHHHHC------CCEEE-EEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeC
Confidence 467 899999999 899999999988 98764 55666666777777764221 223345567889999999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
||.+...-+-++.....-+-++.-.+|
T Consensus 86 pp~el~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 86 PPRDLQPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 998888877777777755555543333
No 261
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.28 E-value=0.021 Score=59.09 Aligned_cols=78 Identities=18% Similarity=0.223 Sum_probs=54.4
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHh----hhccCCEE
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TISGSDLV 182 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e----~i~~ADIV 182 (316)
++++ .|-|+|+|.+|..+++.|++. |+++++-+. +++..+.+++.|+..-.+...+.+- -++++|.+
T Consensus 415 ~~~~--hiiI~G~G~~G~~la~~L~~~------g~~vvvId~-d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~v 485 (558)
T PRK10669 415 DICN--HALLVGYGRVGSLLGEKLLAA------GIPLVVIET-SRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWL 485 (558)
T ss_pred ccCC--CEEEECCChHHHHHHHHHHHC------CCCEEEEEC-CHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEE
Confidence 4444 677999999999999999998 888766554 4555677777775432222223221 25689999
Q ss_pred EEcccCchHHH
Q 021218 183 LLLISDAAQAD 193 (316)
Q Consensus 183 iLavp~~~~~~ 193 (316)
+++++++....
T Consensus 486 iv~~~~~~~~~ 496 (558)
T PRK10669 486 LLTIPNGYEAG 496 (558)
T ss_pred EEEcCChHHHH
Confidence 99999876654
No 262
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.22 E-value=0.01 Score=58.13 Aligned_cols=119 Identities=18% Similarity=0.098 Sum_probs=66.0
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCC-c-EEEEEecCCcccHHHHHH-C--CceecCCCcCC---HHhhhccCCEEEEc
Q 021218 114 IGVIGWGSQGPAQAQNLRDSLAEAKSD-I-VVKVGLRKGSRSFAEARA-A--GFTEENGTLGD---IYETISGSDLVLLL 185 (316)
Q Consensus 114 IGIIG~G~mG~AlA~~Lr~~~~~~g~G-~-~Vivg~r~~~~s~~~A~~-~--G~~~~~~t~~~---~~e~i~~ADIViLa 185 (316)
|.|||.|.+|..+++.|.+. + . +|+++.|+..+..+.+.+ . .+....-...+ +.++++++|+||.|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~------~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~ 74 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR------GPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINC 74 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT------TCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcC------CCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEEC
Confidence 78999999999999999987 5 4 788888775543333322 1 11110001222 56789999999999
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEeCCch--hhhhhccccCCCCCccEEEeccCCCchh
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL--LGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~aGv~--l~~l~~~~~~~~~~i~vI~vhPn~pg~~ 243 (316)
+|+.....+++...+ .|.-.+|.+.+. ...+.+ ..-.+++.+|..+=-.||..
T Consensus 75 ~gp~~~~~v~~~~i~---~g~~yvD~~~~~~~~~~l~~--~a~~~g~~~l~~~G~~PGl~ 129 (386)
T PF03435_consen 75 AGPFFGEPVARACIE---AGVHYVDTSYVTEEMLALDE--EAKEAGVTALPGCGFDPGLS 129 (386)
T ss_dssp SSGGGHHHHHHHHHH---HT-EEEESS-HHHHHHHCHH--HHHHTTSEEE-S-BTTTBHH
T ss_pred CccchhHHHHHHHHH---hCCCeeccchhHHHHHHHHH--HHHhhCCEEEeCcccccchH
Confidence 999855566664433 366778865522 111211 01124666665544444544
No 263
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.22 E-value=0.045 Score=54.34 Aligned_cols=96 Identities=18% Similarity=0.116 Sum_probs=59.5
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC--CceecCCCcCCHH----hhhccCCE
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIY----ETISGSDL 181 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~--G~~~~~~t~~~~~----e~i~~ADI 181 (316)
+.. ++|.|+|+|.+|..+++.|.+. |+++++.++.. +..+...+. ++..-.+...+.+ .-++++|.
T Consensus 229 ~~~-~~iiIiG~G~~g~~l~~~L~~~------~~~v~vid~~~-~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~ 300 (453)
T PRK09496 229 KPV-KRVMIVGGGNIGYYLAKLLEKE------GYSVKLIERDP-ERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADA 300 (453)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCH-HHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCE
Confidence 344 8899999999999999999998 88876666553 334444332 3321111122322 23578999
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
|++++++....-.+..+...+.+..++.-+
T Consensus 301 vi~~~~~~~~n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 301 FIALTNDDEANILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred EEECCCCcHHHHHHHHHHHHhCCCeEEEEE
Confidence 999888765443443444445555555433
No 264
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=96.21 E-value=0.024 Score=53.02 Aligned_cols=65 Identities=28% Similarity=0.324 Sum_probs=42.2
Q ss_pred EEEEcc-cchHHHHHHHHHhhhhhhcCC----cEEEEEecCCcccHHHHHH------C--CceecCCCcCCHHhhhccCC
Q 021218 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARA------A--GFTEENGTLGDIYETISGSD 180 (316)
Q Consensus 114 IGIIG~-G~mG~AlA~~Lr~~~~~~g~G----~~Vivg~r~~~~s~~~A~~------~--G~~~~~~t~~~~~e~i~~AD 180 (316)
|+|||. |.+|..++..|... + .++.+.+.+.++....+.+ . .... ....|..+.+++||
T Consensus 1 I~IIGagG~vG~~ia~~l~~~------~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i--~~~~d~~~~~~~aD 72 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG------SVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKV--SITDDPYEAFKDAD 72 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC------CCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEE--EECCchHHHhCCCC
Confidence 689999 99999999999887 6 4666666543322211111 1 1111 01345678899999
Q ss_pred EEEEcc
Q 021218 181 LVLLLI 186 (316)
Q Consensus 181 IViLav 186 (316)
+|+++.
T Consensus 73 iVv~t~ 78 (263)
T cd00650 73 VVIITA 78 (263)
T ss_pred EEEECC
Confidence 999965
No 265
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=96.19 E-value=0.036 Score=45.98 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=56.0
Q ss_pred CEEEEEc----ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIG----WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG----~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
|+|+||| -+..|.-+.++|++. |++|+-.+.+... -.|.. .+.++.|.-...|++++++|
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~------G~~v~~Vnp~~~~------i~G~~----~y~sl~e~p~~iDlavv~~~ 64 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA------GYEVYPVNPKGGE------ILGIK----CYPSLAEIPEPIDLAVVCVP 64 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT------T-EEEEESTTCSE------ETTEE-----BSSGGGCSST-SEEEE-S-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC------CCEEEEECCCceE------ECcEE----eeccccCCCCCCCEEEEEcC
Confidence 6899999 788899999999998 9886655443321 13443 25677774478999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
+....++++++... ..+.+++..+.
T Consensus 65 ~~~~~~~v~~~~~~-g~~~v~~~~g~ 89 (116)
T PF13380_consen 65 PDKVPEIVDEAAAL-GVKAVWLQPGA 89 (116)
T ss_dssp HHHHHHHHHHHHHH-T-SEEEE-TTS
T ss_pred HHHHHHHHHHHHHc-CCCEEEEEcch
Confidence 99999999987654 33445554443
No 266
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.16 E-value=0.011 Score=56.94 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=57.2
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHh----hhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCC
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRD----SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~----~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~AD 180 (316)
.+++| |++.|||-+ ..|..++..|.+ . +..|.+...+ ..++.+.+++||
T Consensus 153 i~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~~------~AtVt~~hs~-------------------t~~l~~~~~~AD 206 (286)
T PRK14184 153 LSPAG-KKAVVVGRSNIVGKPLALMLGAPGKFA------NATVTVCHSR-------------------TPDLAEECREAD 206 (286)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHhCCcccC------CCEEEEEeCC-------------------chhHHHHHHhCC
Confidence 47899 999999955 789999999987 4 5566555432 126778999999
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+||.++.-.. ++. .+++|+|++++|++
T Consensus 207 IVI~AvG~p~---li~--~~~vk~GavVIDVG 233 (286)
T PRK14184 207 FLFVAIGRPR---FVT--ADMVKPGAVVVDVG 233 (286)
T ss_pred EEEEecCCCC---cCC--HHHcCCCCEEEEee
Confidence 9999995433 343 13459999999986
No 267
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.16 E-value=0.016 Score=56.00 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=56.7
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| |++.|||-+ ..|..++..|.+.+... +..|.+...+ ..++.+.+++||+||.
T Consensus 155 i~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~~--~atVt~~hs~-------------------t~~l~~~~~~ADIvI~ 212 (295)
T PRK14174 155 IETKG-KHCVVVGRSNIVGKPMANLMLQKLKES--NCTVTICHSA-------------------TKDIPSYTRQADILIA 212 (295)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHhccccC--CCEEEEEeCC-------------------chhHHHHHHhCCEEEE
Confidence 47899 999999955 78999999887621000 5566554432 1257788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-. .++. .+++|+|++++|++
T Consensus 213 Avg~~---~li~--~~~vk~GavVIDVg 235 (295)
T PRK14174 213 AIGKA---RFIT--ADMVKPGAVVIDVG 235 (295)
T ss_pred ecCcc---CccC--HHHcCCCCEEEEee
Confidence 99544 3444 22359999999986
No 268
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.13 E-value=0.0084 Score=47.88 Aligned_cols=79 Identities=13% Similarity=0.167 Sum_probs=50.2
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhcc--CCEEEEcccCc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~--ADIViLavp~~ 189 (316)
.++.|+|.|++|.+++....+. . |+.+....+.+++... ..-.|+.. ..+++++.+. .|+-+|++|+.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~---~--g~~i~~~~dv~~~~~G-~~i~gipV----~~~~~~l~~~~~i~iaii~VP~~ 73 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSM---R--GFGIVAVFDVDPEKIG-KEIGGIPV----YGSMDELEEFIEIDIAIITVPAE 73 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH---H--CECEEEEEEECTTTTT-SEETTEEE----ESSHHHHHHHCTTSEEEEES-HH
T ss_pred CeEEEECCCCcHHHHHHhHHHH---c--CCCCEEEEEcCCCccC-cEECCEEe----eccHHHhhhhhCCCEEEEEcCHH
Confidence 5799999999999998665543 2 5444333333332111 01124443 3367776665 99999999999
Q ss_pred hHHHHHHHHHh
Q 021218 190 AQADNYEKIFS 200 (316)
Q Consensus 190 ~~~~vi~ei~~ 200 (316)
...+...++.+
T Consensus 74 ~a~~~~~~~~~ 84 (96)
T PF02629_consen 74 AAQEVADELVE 84 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98888877654
No 269
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.13 E-value=0.057 Score=46.43 Aligned_cols=68 Identities=26% Similarity=0.274 Sum_probs=49.1
Q ss_pred EEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhhccCCEEEEcccCc
Q 021218 114 IGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLISDA 189 (316)
Q Consensus 114 IGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~---~~e~i~~ADIViLavp~~ 189 (316)
|.|+| .|.+|..+++.|.+. |++|+...|+.++..+ ..++....+...+ ..++++++|.|+.++++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~------~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~ 71 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR------GHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPP 71 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHST
T ss_pred eEEECCCChHHHHHHHHHHHC------CCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhhh
Confidence 67999 599999999999999 9999888887554332 3443322222334 456788999999999853
Q ss_pred h
Q 021218 190 A 190 (316)
Q Consensus 190 ~ 190 (316)
.
T Consensus 72 ~ 72 (183)
T PF13460_consen 72 P 72 (183)
T ss_dssp T
T ss_pred c
Confidence 3
No 270
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.08 E-value=0.013 Score=54.28 Aligned_cols=86 Identities=15% Similarity=0.183 Sum_probs=52.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC----------CcccH-HHHHHCCceec-C-CCcCCH
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----------GSRSF-AEARAAGFTEE-N-GTLGDI 172 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~----------~~~s~-~~A~~~G~~~~-~-~t~~~~ 172 (316)
.+++| ++|+|.|+|++|..+++.|.+. |.+|+...+. +...+ +...+.|-... . ....+.
T Consensus 27 ~~l~~-~~v~I~G~G~VG~~~a~~L~~~------g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~ 99 (227)
T cd01076 27 IGLAG-ARVAIQGFGNVGSHAARFLHEA------GAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITN 99 (227)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCC
Confidence 67899 9999999999999999999998 9887633333 22222 22233332110 0 000122
Q ss_pred Hhhh-ccCCEEEEcccCchHHH-HHHHH
Q 021218 173 YETI-SGSDLVLLLISDAAQAD-NYEKI 198 (316)
Q Consensus 173 ~e~i-~~ADIViLavp~~~~~~-vi~ei 198 (316)
++++ .+|||++-|.+.+.+.. .++++
T Consensus 100 ~~i~~~~~Dvlip~a~~~~i~~~~~~~l 127 (227)
T cd01076 100 EELLELDCDILIPAALENQITADNADRI 127 (227)
T ss_pred ccceeecccEEEecCccCccCHHHHhhc
Confidence 2222 37899999998776643 44443
No 271
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.04 E-value=0.017 Score=64.20 Aligned_cols=87 Identities=15% Similarity=0.116 Sum_probs=53.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhc------C---CcEEEEEecCCcccHHHHHHC-Cc--eecCCCcCCHHh--
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAK------S---DIVVKVGLRKGSRSFAEARAA-GF--TEENGTLGDIYE-- 174 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g------~---G~~Vivg~r~~~~s~~~A~~~-G~--~~~~~t~~~~~e-- 174 (316)
+.|++|+|||.|.||...++.|.+. .+.. . +..|.++++...+..+.+... ++ ..-| +.+.++
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lD--v~D~e~L~ 643 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLD--VSDSESLL 643 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEee--cCCHHHHH
Confidence 4458999999999999999999764 1000 0 112556655433333333333 42 1101 234444
Q ss_pred -hhccCCEEEEcccCchHHHHHHHH
Q 021218 175 -TISGSDLVLLLISDAAQADNYEKI 198 (316)
Q Consensus 175 -~i~~ADIViLavp~~~~~~vi~ei 198 (316)
+++++|+|+.|+|+.-+..+....
T Consensus 644 ~~v~~~DaVIsalP~~~H~~VAkaA 668 (1042)
T PLN02819 644 KYVSQVDVVISLLPASCHAVVAKAC 668 (1042)
T ss_pred HhhcCCCEEEECCCchhhHHHHHHH
Confidence 447899999999998877766543
No 272
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.02 E-value=0.022 Score=54.98 Aligned_cols=76 Identities=13% Similarity=0.130 Sum_probs=57.4
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCC----cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCC
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G----~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~AD 180 (316)
.+|+| |++.|||-+ ..|..++..|.+. | ..|.+...+ ..++.+.+++||
T Consensus 153 i~l~G-K~vvViGrS~iVGkPla~lL~~~------~~~~~aTVtvchs~-------------------T~nl~~~~~~AD 206 (293)
T PRK14185 153 IETSG-KKCVVLGRSNIVGKPMAQLMMQK------AYPGDCTVTVCHSR-------------------SKNLKKECLEAD 206 (293)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHcC------CCCCCCEEEEecCC-------------------CCCHHHHHhhCC
Confidence 47899 999999955 7899999999765 4 345544322 236788899999
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+||.++.-... +. .+++|+|++|+|++
T Consensus 207 IvIsAvGkp~~---i~--~~~vk~gavVIDvG 233 (293)
T PRK14185 207 IIIAALGQPEF---VK--ADMVKEGAVVIDVG 233 (293)
T ss_pred EEEEccCCcCc---cC--HHHcCCCCEEEEec
Confidence 99999986543 33 35579999999986
No 273
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.00 E-value=0.032 Score=58.79 Aligned_cols=87 Identities=14% Similarity=0.181 Sum_probs=59.1
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHH----hhhccCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~----e~i~~ADIViLavp 187 (316)
+++-|+|+|.+|+.+++.|++. |+++++- +++++..+.+++.|+..-.+...+.+ .-++++|.+++++.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvI-D~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~ 473 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS------GVKMTVL-DHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 473 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC------CCCEEEE-ECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeC
Confidence 5788999999999999999998 8876555 45556677778888643222222332 23568999999998
Q ss_pred CchHHHHHHHHHhcCCCC
Q 021218 188 DAAQADNYEKIFSCMKPN 205 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~g 205 (316)
+.+....+-.....+.|+
T Consensus 474 d~~~n~~i~~~ar~~~p~ 491 (621)
T PRK03562 474 DPQTSLQLVELVKEHFPH 491 (621)
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 877665443333333344
No 274
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.81 E-value=0.035 Score=54.07 Aligned_cols=66 Identities=14% Similarity=0.098 Sum_probs=41.2
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCCcc--cHHHHHH--C-------CceecCCCcCCH
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSR--SFAEARA--A-------GFTEENGTLGDI 172 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~-------~Vivg~r~~~~--s~~~A~~--~-------G~~~~~~t~~~~ 172 (316)
+||+|||. |.+|.++|..|... ++ ++.+.+.+... ....+.+ + .... ..+.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i----~~~~ 72 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG------EMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVI----TDDP 72 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc------cccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEE----ecCc
Confidence 69999999 99999999988865 43 45555543221 1111111 1 1111 1345
Q ss_pred HhhhccCCEEEEccc
Q 021218 173 YETISGSDLVLLLIS 187 (316)
Q Consensus 173 ~e~i~~ADIViLavp 187 (316)
.+.+++||+||++.-
T Consensus 73 ~~~~~daDivvitaG 87 (322)
T cd01338 73 NVAFKDADWALLVGA 87 (322)
T ss_pred HHHhCCCCEEEEeCC
Confidence 678999999999863
No 275
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.75 E-value=0.027 Score=56.74 Aligned_cols=72 Identities=15% Similarity=0.195 Sum_probs=50.4
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCccc----HHHHHHCCceecCCCcCCHHhhhccCC
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAEARAAGFTEENGTLGDIYETISGSD 180 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s----~~~A~~~G~~~~~~t~~~~~e~i~~AD 180 (316)
+.-+.| ++|+|+|+|..|.++|+.|++. |++|.+.++..... .+..++.|+....+ ....+.+.++|
T Consensus 9 ~~~~~~-~~i~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~--~~~~~~~~~~d 79 (458)
T PRK01710 9 KKFIKN-KKVAVVGIGVSNIPLIKFLVKL------GAKVTAFDKKSEEELGEVSNELKELGVKLVLG--ENYLDKLDGFD 79 (458)
T ss_pred hhhhcC-CeEEEEcccHHHHHHHHHHHHC------CCEEEEECCCCCccchHHHHHHHhCCCEEEeC--CCChHHhccCC
Confidence 456678 9999999999999999999999 99887776543211 12345567643111 12245568899
Q ss_pred EEEEc
Q 021218 181 LVLLL 185 (316)
Q Consensus 181 IViLa 185 (316)
+||+.
T Consensus 80 lVV~S 84 (458)
T PRK01710 80 VIFKT 84 (458)
T ss_pred EEEEC
Confidence 99886
No 276
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.75 E-value=0.032 Score=54.96 Aligned_cols=64 Identities=9% Similarity=0.028 Sum_probs=45.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|.| +++-|||.|.||.-.++.|++. |. ++++.+|.... ...+-. .....+...++|+||.
T Consensus 170 ~~l~~-k~vLvIGaGem~~l~a~~L~~~------g~~~i~v~nRt~~~-----~~~~~~-----~~~~~~~~~~~DvVIs 232 (338)
T PRK00676 170 QKSKK-ASLLFIGYSEINRKVAYYLQRQ------GYSRITFCSRQQLT-----LPYRTV-----VREELSFQDPYDVIFF 232 (338)
T ss_pred CCccC-CEEEEEcccHHHHHHHHHHHHc------CCCEEEEEcCCccc-----cchhhh-----hhhhhhcccCCCEEEE
Confidence 56889 9999999999999999999998 85 68888887421 111100 0011134578999999
Q ss_pred cc
Q 021218 185 LI 186 (316)
Q Consensus 185 av 186 (316)
|+
T Consensus 233 ~t 234 (338)
T PRK00676 233 GS 234 (338)
T ss_pred cC
Confidence 74
No 277
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.74 E-value=0.064 Score=48.54 Aligned_cols=88 Identities=15% Similarity=0.132 Sum_probs=53.7
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-------------------cccHHHHHHC----
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARAA---- 160 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~-------------------~~s~~~A~~~---- 160 (316)
.+-|+. ++|.|||+|-+|..+|++|... |. ++.+.++.. .+....+++.
T Consensus 16 q~kl~~-~~VlviG~GglGs~ia~~La~~------Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (202)
T TIGR02356 16 QQRLLN-SHVLIIGAGGLGSPAALYLAGA------GVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN 88 (202)
T ss_pred HHHhcC-CCEEEECCCHHHHHHHHHHHHc------CCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC
Confidence 466788 9999999999999999999998 76 555554431 0111111111
Q ss_pred -Cceec--CCCc--CCHHhhhccCCEEEEcccCchHHHHHHHHH
Q 021218 161 -GFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (316)
Q Consensus 161 -G~~~~--~~t~--~~~~e~i~~ADIViLavp~~~~~~vi~ei~ 199 (316)
.+..+ +... .+.++.++++|+||.|+-.......+++..
T Consensus 89 p~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~ 132 (202)
T TIGR02356 89 SDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDAC 132 (202)
T ss_pred CCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 11100 0011 124567899999999986655555666543
No 278
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.70 E-value=0.066 Score=48.23 Aligned_cols=69 Identities=22% Similarity=0.270 Sum_probs=50.6
Q ss_pred EEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcc-cHHHHHHCCceecCCCc---CCHHhhhccCCEEEEcccC
Q 021218 114 IGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTL---GDIYETISGSDLVLLLISD 188 (316)
Q Consensus 114 IGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~t~---~~~~e~i~~ADIViLavp~ 188 (316)
|.|+| .|.+|.++++.|.+. +++|.+..|+..+ ..+..+..|........ .++.++++++|.|+++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~------~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA------GFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhC------CCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 68999 599999999999998 9999888887633 23444556754221122 2355689999999999994
No 279
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=95.69 E-value=0.018 Score=57.87 Aligned_cols=74 Identities=19% Similarity=0.143 Sum_probs=44.2
Q ss_pred CEEEEEcccchHHHHHH--HHHhhhhhhcCCcEEEEEecCCcccHHHH--------HHCCceecCCCcCCHHhhhccCCE
Q 021218 112 NQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEA--------RAAGFTEENGTLGDIYETISGSDL 181 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~--~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A--------~~~G~~~~~~t~~~~~e~i~~ADI 181 (316)
+||+|||.|++|.+.+. .+.... +-.|.+|++.+++.+ ..+.. ...+....-....|..+++++||+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~--~~~g~eV~L~Did~e-~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~ 77 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTP--ELSGSTIALMDIDEE-RLETVEILAKKIVEELGAPLKIEATTDRREALDGADF 77 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCC--CCCCCEEEEECCCHH-HHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCE
Confidence 47999999999998766 343110 111567777665432 22211 111111000114577899999999
Q ss_pred EEEcccC
Q 021218 182 VLLLISD 188 (316)
Q Consensus 182 ViLavp~ 188 (316)
||.+++.
T Consensus 78 Vi~ai~~ 84 (423)
T cd05297 78 VINTIQV 84 (423)
T ss_pred EEEeeEe
Confidence 9999995
No 280
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.68 E-value=0.05 Score=54.79 Aligned_cols=72 Identities=22% Similarity=0.158 Sum_probs=50.7
Q ss_pred ccccCCCCEEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEE
Q 021218 105 PDAFNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~A-lA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIVi 183 (316)
++..++ ++|.|||.|..|.+ +|+.|++. |++|.+.+.+.....+..++.|+... .....+.+.++|+||
T Consensus 2 ~~~~~~-~~v~viG~G~sG~s~~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~~~~~~~~~~~d~vv 71 (461)
T PRK00421 2 PELRRI-KRIHFVGIGGIGMSGLAEVLLNL------GYKVSGSDLKESAVTQRLLELGAIIF---IGHDAENIKDADVVV 71 (461)
T ss_pred CCcCCC-CEEEEEEEchhhHHHHHHHHHhC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHCCCCCEEE
Confidence 355677 89999999999999 89999999 99987776554333333445576532 122345567899988
Q ss_pred Ecc
Q 021218 184 LLI 186 (316)
Q Consensus 184 Lav 186 (316)
+.-
T Consensus 72 ~sp 74 (461)
T PRK00421 72 YSS 74 (461)
T ss_pred ECC
Confidence 754
No 281
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.59 E-value=0.03 Score=53.61 Aligned_cols=99 Identities=14% Similarity=0.138 Sum_probs=61.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCc---ccHHHHHHCCceecC-CCcCC------HHh
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGS---RSFAEARAAGFTEEN-GTLGD------IYE 174 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~---~s~~~A~~~G~~~~~-~t~~~------~~e 174 (316)
.+++| +++.|||.|-.+.+++..|... |. ++.+.+|..+ +..+.+.+.+..... -...+ +.+
T Consensus 120 ~~~~~-k~vlvlGaGGaarAi~~~l~~~------g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~ 192 (288)
T PRK12749 120 FDIKG-KTMVLLGAGGASTAIGAQGAIE------GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAE 192 (288)
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhh
Confidence 35788 9999999999999999988887 76 6888888642 333444332210000 00112 233
Q ss_pred hhccCCEEEEcccCchHHH----HHHHHHhcCCCCcEEEEeC
Q 021218 175 TISGSDLVLLLISDAAQAD----NYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 175 ~i~~ADIViLavp~~~~~~----vi~ei~~~mk~gaiLid~a 212 (316)
.+.++|+||.++|...... .... ...++++.++.|+.
T Consensus 193 ~~~~aDivINaTp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~v 233 (288)
T PRK12749 193 ALASADILTNGTKVGMKPLENESLVND-ISLLHPGLLVTECV 233 (288)
T ss_pred hcccCCEEEECCCCCCCCCCCCCCCCc-HHHCCCCCEEEEec
Confidence 5678999999999865321 1111 13366777777763
No 282
>PRK05442 malate dehydrogenase; Provisional
Probab=95.57 E-value=0.053 Score=52.95 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=41.0
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCCcc------cHHHHHHC-----CceecCCCcCC
Q 021218 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSR------SFAEARAA-----GFTEENGTLGD 171 (316)
Q Consensus 111 ~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~-------~Vivg~r~~~~------s~~~A~~~-----G~~~~~~t~~~ 171 (316)
+.||+|||. |.+|.++|..|... ++ ++.+.+.+... ..+..... .... ..+
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~------~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i----~~~ 73 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASG------DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVI----TDD 73 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhh------hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEE----ecC
Confidence 479999998 99999999988764 32 45555442211 11111111 1111 235
Q ss_pred HHhhhccCCEEEEccc
Q 021218 172 IYETISGSDLVLLLIS 187 (316)
Q Consensus 172 ~~e~i~~ADIViLavp 187 (316)
..+.+++||+||++.-
T Consensus 74 ~y~~~~daDiVVitaG 89 (326)
T PRK05442 74 PNVAFKDADVALLVGA 89 (326)
T ss_pred hHHHhCCCCEEEEeCC
Confidence 5678999999998764
No 283
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.57 E-value=0.046 Score=52.71 Aligned_cols=80 Identities=11% Similarity=0.165 Sum_probs=56.9
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| |++.|||-+ ..|..++.-|.+..+ ..+..|.+...+ +.++.+.+++||+||.
T Consensus 149 i~l~G-k~vvViGrS~iVGkPla~lL~~~~~--~~~AtVtvchs~-------------------T~~l~~~~~~ADIvV~ 206 (287)
T PRK14181 149 IPLHG-RHVAIVGRSNIVGKPLAALLMQKHP--DTNATVTLLHSQ-------------------SENLTEILKTADIIIA 206 (287)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHhCcC--CCCCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999965 789999999876500 002345443221 2367888999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-.. ++. .+++|+|++|+|++
T Consensus 207 AvG~p~---~i~--~~~ik~GavVIDvG 229 (287)
T PRK14181 207 AIGVPL---FIK--EEMIAEKAVIVDVG 229 (287)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEec
Confidence 997553 343 24578999999986
No 284
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.47 E-value=0.045 Score=52.98 Aligned_cols=80 Identities=11% Similarity=0.135 Sum_probs=56.3
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| +++.|||- ...|..+|.-|.+. .+..+..|.+...+ +.++.+.+++||+||.
T Consensus 157 i~l~G-k~vvViGrS~iVGkPla~lL~~~--~~~~~atVtv~hs~-------------------T~~l~~~~~~ADIvVs 214 (297)
T PRK14168 157 VETSG-AEVVVVGRSNIVGKPIANMMTQK--GPGANATVTIVHTR-------------------SKNLARHCQRADILIV 214 (297)
T ss_pred CCCCC-CEEEEECCCCcccHHHHHHHHhc--ccCCCCEEEEecCC-------------------CcCHHHHHhhCCEEEE
Confidence 47899 99999995 48899999998765 00002355544322 2367788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.-.. ++. .+++|+|++|+|++
T Consensus 215 AvGkp~---~i~--~~~ik~gavVIDvG 237 (297)
T PRK14168 215 AAGVPN---LVK--PEWIKPGATVIDVG 237 (297)
T ss_pred ecCCcC---ccC--HHHcCCCCEEEecC
Confidence 986443 333 24578999999975
No 285
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=95.46 E-value=0.073 Score=51.88 Aligned_cols=78 Identities=15% Similarity=0.143 Sum_probs=55.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCc
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~ 189 (316)
.+|+||| .|..|..+.+.|... . +++.....+... . .. +.++..+++|++|+|+|..
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~h------p~~~l~~~~s~~~~-------~-~~-------~~~~~~~~~DvvFlalp~~ 61 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGR------SDIELLSIPEAKRK-------D-AA-------ARRELLNAADVAILCLPDD 61 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcC------CCeEEEEEecCCCC-------c-cc-------CchhhhcCCCEEEECCCHH
Confidence 6899999 899999999988875 3 343322222111 0 11 3345667899999999998
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 190 AQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 190 ~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
...++..++.+ .|..|+|.++
T Consensus 62 ~s~~~~~~~~~---~g~~VIDlSa 82 (313)
T PRK11863 62 AAREAVALIDN---PATRVIDAST 82 (313)
T ss_pred HHHHHHHHHHh---CCCEEEECCh
Confidence 88888777643 5888998875
No 286
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.44 E-value=0.034 Score=53.89 Aligned_cols=68 Identities=19% Similarity=0.186 Sum_probs=41.8
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHH----CCcee--cCCCcCCHHhhhccCCEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGFTE--ENGTLGDIYETISGSDLVL 183 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~----~G~~~--~~~t~~~~~e~i~~ADIVi 183 (316)
+||+|||.|.+|.++|..|... +. ++.+.+.+.+.....+.+ ..+.. .-....+.+ .+++||+||
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~------~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivv 76 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAK------GLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVI 76 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEE
Confidence 6999999999999999998876 54 566665543322222221 10100 000023555 489999999
Q ss_pred Ecc
Q 021218 184 LLI 186 (316)
Q Consensus 184 Lav 186 (316)
++.
T Consensus 77 ita 79 (312)
T cd05293 77 VTA 79 (312)
T ss_pred ECC
Confidence 954
No 287
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=95.40 E-value=0.065 Score=54.33 Aligned_cols=87 Identities=18% Similarity=0.203 Sum_probs=65.2
Q ss_pred CEEEEEcc----cchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 112 kkIGIIG~----G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
++|+|||. |++|..+.++|++. |+ +|+..+.+ .. .-.|+.. +.+++|+-...|+++++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~------gf~g~v~~Vnp~-~~-----~i~G~~~----~~sl~~lp~~~Dlavi~ 71 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEG------GYKGKIYPVNPK-AG-----EILGVKA----YPSVLEIPDPVDLAVIV 71 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhC------CCCCcEEEECCC-CC-----ccCCccc----cCCHHHCCCCCCEEEEe
Confidence 89999998 88999999999988 76 45433322 21 2245542 56788877788999999
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEeCCch
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~aGv~ 215 (316)
+|+....+++++..+ ..-..++++++||.
T Consensus 72 vp~~~~~~~l~e~~~-~gv~~~vi~s~gf~ 100 (447)
T TIGR02717 72 VPAKYVPQVVEECGE-KGVKGAVVITAGFK 100 (447)
T ss_pred cCHHHHHHHHHHHHh-cCCCEEEEECCCcc
Confidence 999999999998765 34456777888874
No 288
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=95.40 E-value=0.069 Score=43.41 Aligned_cols=82 Identities=18% Similarity=0.218 Sum_probs=57.1
Q ss_pred chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhhccCCEEEEcccCchHHH-HH
Q 021218 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NY 195 (316)
Q Consensus 121 ~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~----~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~~-vi 195 (316)
+-+-.+++.|++. |.+|.+.+..-.. . .... .++.. ..++++.++.+|.||++++-....+ -+
T Consensus 17 Sp~~~l~~~L~~~------g~~V~~~DP~v~~-~-~~~~~~~~~~~~~----~~~~~~~~~~~D~vvl~t~h~~f~~l~~ 84 (106)
T PF03720_consen 17 SPALELIEELKER------GAEVSVYDPYVDE-E-EIKELGKLEGVEV----CDDLEEALKGADAVVLATDHDEFRELDW 84 (106)
T ss_dssp -HHHHHHHHHHHT------T-EEEEE-TTSHH-H-HHHHHCHHHCEEE----ESSHHHHHTTESEEEESS--GGGGCCGH
T ss_pred CHHHHHHHHHHHC------CCEEEEECCccCh-H-HHHhhCCccceEE----ecCHHHHhcCCCEEEEEecCHHHhccCH
Confidence 4566788888888 9987776654322 2 2222 34542 4578999999999999999999887 56
Q ss_pred HHHHhcCCCCcEEEEeCCc
Q 021218 196 EKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 196 ~ei~~~mk~gaiLid~aGv 214 (316)
+++...|+++.+|+|..++
T Consensus 85 ~~~~~~~~~~~~iiD~~~~ 103 (106)
T PF03720_consen 85 EEIAKLMRKPPVIIDGRNI 103 (106)
T ss_dssp HHHHHHSCSSEEEEESSST
T ss_pred HHHHHhcCCCCEEEECccc
Confidence 6888889888999998775
No 289
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=95.36 E-value=0.086 Score=49.60 Aligned_cols=108 Identities=14% Similarity=0.172 Sum_probs=76.5
Q ss_pred HHCCceecCCCcCCHHhhhccCCEEEEcccCch-HHHHHHHHHhcCCCCcEEEEeCCchhh-hhhccccCCCCCccEEEe
Q 021218 158 RAAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLLG-HLQSMGLDFPKNIGVIAV 235 (316)
Q Consensus 158 ~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~-~~~vi~ei~~~mk~gaiLid~aGv~l~-~l~~~~~~~~~~i~vI~v 235 (316)
+..|+.. ..|..|+++++|+||-=.|-.. +.++++++.+.+++|++++..+.+... +.+.....=+++.++-..
T Consensus 123 ed~g~~v----ttddreavedad~iitwlpkg~~qpdiikkfiddipegaivthactipttkf~kifed~gredlnvtsy 198 (343)
T COG4074 123 EDMGIVV----TTDDREAVEDADMIITWLPKGGVQPDIIKKFIDDIPEGAIVTHACTIPTTKFKKIFEDMGREDLNVTSY 198 (343)
T ss_pred HHceeEE----ecCcHhhhcCCCeEEEeccCCCCCccHHHHHHhcCCCCceEeeecccchHHHHHHHHHhCccccceecc
Confidence 4567664 4577899999999999988655 567999999999999999988876422 211100112478999999
Q ss_pred ccCCCchhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHc
Q 021218 236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL 284 (316)
Q Consensus 236 hPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~al 284 (316)
|| +..+++ .| - ++......++++++.+-++.+..
T Consensus 199 hp-g~vpem-----kg-------q--vyiaegyaseeavn~lyelg~ka 232 (343)
T COG4074 199 HP-GTVPEM-----KG-------Q--VYIAEGYASEEAVNALYELGEKA 232 (343)
T ss_pred CC-CCCccc-----cC-------c--EEEecccccHHHHHHHHHHHHHh
Confidence 99 556664 23 2 24566788999998887776543
No 290
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=95.34 E-value=0.093 Score=51.18 Aligned_cols=70 Identities=17% Similarity=0.080 Sum_probs=42.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCCcc--cHHHHHHC--Cc-eecCC--CcCCHHhhh
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSR--SFAEARAA--GF-TEENG--TLGDIYETI 176 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~-------~Vivg~r~~~~--s~~~A~~~--G~-~~~~~--t~~~~~e~i 176 (316)
.||+|||. |.+|.++|..|... ++ ++.+.+.+... ....+.+. .. ..... ...+..+.+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~ 77 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG------ELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAF 77 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC------CcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHh
Confidence 58999998 99999999998876 53 55555543211 22222211 11 00000 013556789
Q ss_pred ccCCEEEEccc
Q 021218 177 SGSDLVLLLIS 187 (316)
Q Consensus 177 ~~ADIViLavp 187 (316)
++||+||++.-
T Consensus 78 ~daDvVVitAG 88 (323)
T TIGR01759 78 KDVDAALLVGA 88 (323)
T ss_pred CCCCEEEEeCC
Confidence 99999998763
No 291
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.29 E-value=0.05 Score=55.27 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=49.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
..+.+ ++|.|+|+|-.|.++|+.|++. |.+|.+.+++.....+...+.|+....+ ....+.+.++|+||..
T Consensus 11 ~~~~~-~~v~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~~~--~~~~~~~~~~d~vV~S 81 (473)
T PRK00141 11 PQELS-GRVLVAGAGVSGRGIAAMLSEL------GCDVVVADDNETARHKLIEVTGVADIST--AEASDQLDSFSLVVTS 81 (473)
T ss_pred ccccC-CeEEEEccCHHHHHHHHHHHHC------CCEEEEECCChHHHHHHHHhcCcEEEeC--CCchhHhcCCCEEEeC
Confidence 45678 9999999999999999999999 9987776654332222334557653111 1233456789998876
No 292
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=95.27 E-value=0.11 Score=50.74 Aligned_cols=79 Identities=16% Similarity=0.195 Sum_probs=55.5
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
.+|+||| .|-.|.-+.+.|... ..+++.....+ +. +. ..+.+++++++|++|+|+|...
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H-----P~~el~~l~s~-~~---------~~-----~~~~~~~~~~~D~vFlalp~~~ 61 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR-----DDIELLSIAPD-RR---------KD-----AAERAKLLNAADVAILCLPDDA 61 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC-----CCeEEEEEecc-cc---------cC-----cCCHhHhhcCCCEEEECCCHHH
Confidence 4799999 899999999998875 12343322211 11 21 1245677789999999999988
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCC
Q 021218 191 QADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 191 ~~~vi~ei~~~mk~gaiLid~aG 213 (316)
..++.+++. ..|..|+|.++
T Consensus 62 s~~~~~~~~---~~g~~VIDlSa 81 (310)
T TIGR01851 62 AREAVSLVD---NPNTCIIDAST 81 (310)
T ss_pred HHHHHHHHH---hCCCEEEECCh
Confidence 777777654 35888998875
No 293
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.25 E-value=0.046 Score=52.16 Aligned_cols=98 Identities=15% Similarity=0.116 Sum_probs=59.7
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCC---cccHHHHHHC---C--ceecCCCcC---CHH
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKG---SRSFAEARAA---G--FTEENGTLG---DIY 173 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~-Vivg~r~~---~~s~~~A~~~---G--~~~~~~t~~---~~~ 173 (316)
..++| +++.|+|.|-+|.+++..|.+. |.+ |.+.+|+. ++..+.+.+. + ......... +.+
T Consensus 122 ~~~~~-k~vlI~GAGGagrAia~~La~~------G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~ 194 (289)
T PRK12548 122 VDVKG-KKLTVIGAGGAATAIQVQCALD------GAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLK 194 (289)
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHH
Confidence 35678 9999999999999999999888 874 88888764 2333333221 1 000000011 233
Q ss_pred hhhccCCEEEEcccCchHHH----HHHHHHhcCCCCcEEEEe
Q 021218 174 ETISGSDLVLLLISDAAQAD----NYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 174 e~i~~ADIViLavp~~~~~~----vi~ei~~~mk~gaiLid~ 211 (316)
+.++++|+||.++|...... .+. -...++++.++.|+
T Consensus 195 ~~~~~~DilINaTp~Gm~~~~~~~~~~-~~~~l~~~~~v~D~ 235 (289)
T PRK12548 195 AEIASSDILVNATLVGMKPNDGETNIK-DTSVFRKDLVVADT 235 (289)
T ss_pred hhhccCCEEEEeCCCCCCCCCCCCCCC-cHHhcCCCCEEEEe
Confidence 45678899999999765321 110 01345666677766
No 294
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.22 E-value=0.12 Score=50.63 Aligned_cols=90 Identities=14% Similarity=0.187 Sum_probs=56.6
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC---------------------cccH---HHHHH
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSF---AEARA 159 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~---------------------~~s~---~~A~~ 159 (316)
.+.|++ ++|.|||+|.+|..+|+.|... |. ++.+.++.. ++.. +...+
T Consensus 19 Q~~L~~-~~VlIiG~GglGs~va~~La~a------Gvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~ 91 (338)
T PRK12475 19 QRKIRE-KHVLIVGAGALGAANAEALVRA------GIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRK 91 (338)
T ss_pred HHhhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHH
Confidence 577888 9999999999999999999998 76 555554431 0111 01111
Q ss_pred --CCceec----CCCcCCHHhhhccCCEEEEcccCchHHHHHHHHHhc
Q 021218 160 --AGFTEE----NGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSC 201 (316)
Q Consensus 160 --~G~~~~----~~t~~~~~e~i~~ADIViLavp~~~~~~vi~ei~~~ 201 (316)
.++..+ +-+..+.+++++++|+||.++-......+++++...
T Consensus 92 inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~ 139 (338)
T PRK12475 92 INSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQK 139 (338)
T ss_pred HCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHH
Confidence 122110 111134577899999999999655544466765543
No 295
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=95.19 E-value=0.059 Score=53.77 Aligned_cols=94 Identities=13% Similarity=0.098 Sum_probs=54.4
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC-CceecC-CCcCCHH-hhhccCCEEEEccc
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEEN-GTLGDIY-ETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~-G~~~~~-~t~~~~~-e~i~~ADIViLavp 187 (316)
++|+||| .|..|..+.+.|.+. .+.++....++.+.-....... .....+ ....+.+ +.++++|+|++++|
T Consensus 39 ~kVaIvGATG~vG~eLlrlL~~h-----P~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp 113 (381)
T PLN02968 39 KRIFVLGASGYTGAEVRRLLANH-----PDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLP 113 (381)
T ss_pred cEEEEECCCChHHHHHHHHHHhC-----CCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCC
Confidence 7999999 599999999988765 1346554443321111001111 000000 0011222 22588999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
.....++.+.+ +.|..|+|.++.
T Consensus 114 ~~~s~~i~~~~----~~g~~VIDlSs~ 136 (381)
T PLN02968 114 HGTTQEIIKAL----PKDLKIVDLSAD 136 (381)
T ss_pred HHHHHHHHHHH----hCCCEEEEcCch
Confidence 87666666653 357888988763
No 296
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=95.17 E-value=0.11 Score=49.92 Aligned_cols=69 Identities=20% Similarity=0.238 Sum_probs=41.9
Q ss_pred EEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHHCC--cee-cCC--CcCCHHhhhccCCEEEEcc
Q 021218 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG--FTE-ENG--TLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 114 IGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~~G--~~~-~~~--t~~~~~e~i~~ADIViLav 186 (316)
|+|||.|.+|.++|..|... |. ++.+.+.+.+.....+.+.. ... ... ...+..+.+++||+||++.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~------~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIita 74 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK------GLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITA 74 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcC
Confidence 68999999999999998887 64 56666654432222222110 000 000 0112256889999999998
Q ss_pred cC
Q 021218 187 SD 188 (316)
Q Consensus 187 p~ 188 (316)
..
T Consensus 75 g~ 76 (300)
T cd00300 75 GA 76 (300)
T ss_pred CC
Confidence 63
No 297
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.15 E-value=0.073 Score=51.86 Aligned_cols=90 Identities=14% Similarity=0.145 Sum_probs=55.6
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCc---EEEEEecCCcccHHHHHHCCceecCCCcCCH-HhhhccCCEEEEc
Q 021218 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLL 185 (316)
Q Consensus 111 ~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~---~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~-~e~i~~ADIViLa 185 (316)
|++|+||| .|..|..+.+.|.+. ++ ++....+..+...... -.|... ...+. .+.++++|+||+|
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~------~hp~~~l~~l~s~~~~g~~l~-~~g~~i---~v~d~~~~~~~~vDvVf~A 70 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEER------NFPVDKLRLLASARSAGKELS-FKGKEL---KVEDLTTFDFSGVDIALFS 70 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC------CCCcceEEEEEccccCCCeee-eCCcee---EEeeCCHHHHcCCCEEEEC
Confidence 38999999 899999999999886 54 3343333322111110 011110 01111 1335789999999
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
+|-....++.+++.+ .|..|+|.++
T Consensus 71 ~g~g~s~~~~~~~~~---~G~~VIDlS~ 95 (334)
T PRK14874 71 AGGSVSKKYAPKAAA---AGAVVIDNSS 95 (334)
T ss_pred CChHHHHHHHHHHHh---CCCEEEECCc
Confidence 998877777776543 5778888765
No 298
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.15 E-value=0.1 Score=52.00 Aligned_cols=73 Identities=23% Similarity=0.196 Sum_probs=50.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccH----HHHHHCCceecCCCcCCHHhhhccCCEE
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----AEARAAGFTEENGTLGDIYETISGSDLV 182 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~----~~A~~~G~~~~~~t~~~~~e~i~~ADIV 182 (316)
+++| +++.|||.|.+|.++|+.|.+. |++|.+.++...... +...+.|..... ....++...++|+|
T Consensus 2 ~~~~-k~v~iiG~g~~G~~~A~~l~~~------G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~d~v 72 (450)
T PRK14106 2 ELKG-KKVLVVGAGVSGLALAKFLKKL------GAKVILTDEKEEDQLKEALEELGELGIELVL--GEYPEEFLEGVDLV 72 (450)
T ss_pred CcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchHHHHHHHHHHHhcCCEEEe--CCcchhHhhcCCEE
Confidence 4678 9999999999999999999999 999887776542222 222334543210 11233556789999
Q ss_pred EEcccC
Q 021218 183 LLLISD 188 (316)
Q Consensus 183 iLavp~ 188 (316)
|.+.-.
T Consensus 73 v~~~g~ 78 (450)
T PRK14106 73 VVSPGV 78 (450)
T ss_pred EECCCC
Confidence 997753
No 299
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.05 E-value=0.096 Score=51.00 Aligned_cols=75 Identities=11% Similarity=0.061 Sum_probs=41.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhh-hhhhcCCcEEEEEecCCcccHHHHHHCCcee------cC-CCcCCHHhhhccCCEE
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGSRSFAEARAAGFTE------EN-GTLGDIYETISGSDLV 182 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~-~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~------~~-~t~~~~~e~i~~ADIV 182 (316)
.||+|||. |.+|.+++..|... +..-..+.++++.+++.......+....+.+ .+ ....+..+.+++||+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 57999998 99999999999875 0000002366666654321111111111110 00 0024556889999999
Q ss_pred EEcc
Q 021218 183 LLLI 186 (316)
Q Consensus 183 iLav 186 (316)
|++.
T Consensus 83 I~tA 86 (325)
T cd01336 83 ILVG 86 (325)
T ss_pred EEeC
Confidence 9875
No 300
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.97 E-value=0.27 Score=47.24 Aligned_cols=94 Identities=21% Similarity=0.155 Sum_probs=63.3
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC--CcccHHHHHHCCceecCCCcCCHHh--hhccCCEEE
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEARAAGFTEENGTLGDIYE--TISGSDLVL 183 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~--~~~s~~~A~~~G~~~~~~t~~~~~e--~i~~ADIVi 183 (316)
.+| .++.|+|.|.+|...++.++.. |.+|++..++ +++..+.+++.|...-+....+..+ .....|+||
T Consensus 171 ~~g-~~vlI~G~G~vG~~a~q~ak~~------G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vi 243 (355)
T cd08230 171 WNP-RRALVLGAGPIGLLAALLLRLR------GFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLII 243 (355)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEE
Confidence 378 9999999999999999999998 8877766653 3456677888886521111111111 224579999
Q ss_pred EcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 184 Lavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
-++.... .+.+....++++..++.+
T Consensus 244 d~~g~~~---~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 244 EATGVPP---LAFEALPALAPNGVVILF 268 (355)
T ss_pred ECcCCHH---HHHHHHHHccCCcEEEEE
Confidence 9987432 455666677887766544
No 301
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.96 E-value=0.099 Score=52.75 Aligned_cols=71 Identities=27% Similarity=0.188 Sum_probs=49.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcc----cHHHHHHCCceecCCCcCCHHhhhccCCE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENGTLGDIYETISGSDL 181 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~----s~~~A~~~G~~~~~~t~~~~~e~i~~ADI 181 (316)
.+++| +++.|||.|..|.++|..|++. |.+|.+.++.+.. ..+..++.|+... .....+...++|+
T Consensus 12 ~~~~~-~~v~viG~G~~G~~~A~~L~~~------G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~---~~~~~~~~~~~D~ 81 (480)
T PRK01438 12 SDWQG-LRVVVAGLGVSGFAAADALLEL------GARVTVVDDGDDERHRALAAILEALGATVR---LGPGPTLPEDTDL 81 (480)
T ss_pred cCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchhhhHHHHHHHHHcCCEEE---ECCCccccCCCCE
Confidence 35678 9999999999999999999998 9988877655321 1233455676532 1111124457999
Q ss_pred EEEcc
Q 021218 182 VLLLI 186 (316)
Q Consensus 182 ViLav 186 (316)
||++.
T Consensus 82 Vv~s~ 86 (480)
T PRK01438 82 VVTSP 86 (480)
T ss_pred EEECC
Confidence 99886
No 302
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.94 E-value=0.084 Score=51.13 Aligned_cols=80 Identities=15% Similarity=0.103 Sum_probs=55.7
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+|+| |++.|||-+ ..|..+|..|.+.... .+..|.+...+ +.++.+.+++||+||.
T Consensus 153 i~l~G-k~vvViGrS~iVGkPla~lL~~~~~~--~~aTVtvchs~-------------------T~~l~~~~~~ADIvIs 210 (297)
T PRK14167 153 VDTEG-ADVVVVGRSDIVGKPMANLLIQKADG--GNATVTVCHSR-------------------TDDLAAKTRRADIVVA 210 (297)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHhcCccC--CCCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 37899 999999955 7899999998653000 02345554221 2367788999999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++--.. ++. .+++|+|++|+|++
T Consensus 211 AvGkp~---~i~--~~~ik~gaiVIDvG 233 (297)
T PRK14167 211 AAGVPE---LID--GSMLSEGATVIDVG 233 (297)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEcc
Confidence 886433 333 24578999999975
No 303
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=94.94 E-value=0.093 Score=51.49 Aligned_cols=87 Identities=23% Similarity=0.218 Sum_probs=52.7
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCc---EEEEEecCCc--ccHHHHHHCC--ceecCCCcCCHHhhhccCCEE
Q 021218 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGS--RSFAEARAAG--FTEENGTLGDIYETISGSDLV 182 (316)
Q Consensus 111 ~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~---~Vivg~r~~~--~s~~~A~~~G--~~~~~~t~~~~~e~i~~ADIV 182 (316)
|++|+||| .|..|..+.+.|.+. ++ ++.......+ +... -.| ...+ -.+.++ ++++|++
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~------~hP~~~l~~v~s~~~aG~~l~---~~~~~l~~~---~~~~~~-~~~vD~v 70 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEER------DFPVGTLHLLASSESAGHSVP---FAGKNLRVR---EVDSFD-FSQVQLA 70 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhC------CCCceEEEEEECcccCCCeec---cCCcceEEe---eCChHH-hcCCCEE
Confidence 36899999 699999999999865 43 2222222111 1111 111 1110 112233 5899999
Q ss_pred EEcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 183 iLavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
++++|.....++.++..+ .|..++|.++
T Consensus 71 Fla~p~~~s~~~v~~~~~---~G~~VIDlS~ 98 (336)
T PRK05671 71 FFAAGAAVSRSFAEKARA---AGCSVIDLSG 98 (336)
T ss_pred EEcCCHHHHHHHHHHHHH---CCCeEEECch
Confidence 999997666666666544 4788898775
No 304
>PTZ00325 malate dehydrogenase; Provisional
Probab=94.93 E-value=0.056 Score=52.73 Aligned_cols=76 Identities=17% Similarity=0.093 Sum_probs=44.8
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH----C-CceecCCCc-CCHHhhhcc
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----A-GFTEENGTL-GDIYETISG 178 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~----~-G~~~~~~t~-~~~~e~i~~ 178 (316)
..++. +||+|||. |.+|.++|..|... +...++++.+.... ...+.+ . .....+.+. .+..+.+++
T Consensus 4 ~~~~~-~KI~IiGaaG~VGs~~a~~l~~~----~~~~elvL~Di~~~--~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~g 76 (321)
T PTZ00325 4 SALKM-FKVAVLGAAGGIGQPLSLLLKQN----PHVSELSLYDIVGA--PGVAADLSHIDTPAKVTGYADGELWEKALRG 76 (321)
T ss_pred cCCCC-CEEEEECCCCHHHHHHHHHHhcC----CCCCEEEEEecCCC--cccccchhhcCcCceEEEecCCCchHHHhCC
Confidence 45666 99999999 99999999999865 11235555554211 111111 0 111111111 222678999
Q ss_pred CCEEEEcccC
Q 021218 179 SDLVLLLISD 188 (316)
Q Consensus 179 ADIViLavp~ 188 (316)
||+|+++.-.
T Consensus 77 aDvVVitaG~ 86 (321)
T PTZ00325 77 ADLVLICAGV 86 (321)
T ss_pred CCEEEECCCC
Confidence 9999987643
No 305
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=94.93 E-value=0.073 Score=52.35 Aligned_cols=86 Identities=15% Similarity=0.229 Sum_probs=55.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCc---EEE-EEecCC-cccHHHHHHCC--ceecCCCcCCHHhhhccCCEEE
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVK-VGLRKG-SRSFAEARAAG--FTEENGTLGDIYETISGSDLVL 183 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~---~Vi-vg~r~~-~~s~~~A~~~G--~~~~~~t~~~~~e~i~~ADIVi 183 (316)
++|+||| .|..|..+.+.|.+. ++ ++. +..++. .+.... .| ...+ ..+. +.++++|+||
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~------~hP~~~l~~las~rsaGk~~~~---~~~~~~v~---~~~~-~~~~~~D~vf 74 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDR------DFPYSSLKMLASARSAGKKVTF---EGRDYTVE---ELTE-DSFDGVDIAL 74 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhC------CCCcceEEEEEccCCCCCeeee---cCceeEEE---eCCH-HHHcCCCEEE
Confidence 7899999 799999999999875 54 322 222221 111111 12 1110 0122 4568999999
Q ss_pred EcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 184 LLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 184 Lavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
+++|.....++..+..+ .|+.|+|.++
T Consensus 75 ~a~p~~~s~~~~~~~~~---~g~~VIDlS~ 101 (344)
T PLN02383 75 FSAGGSISKKFGPIAVD---KGAVVVDNSS 101 (344)
T ss_pred ECCCcHHHHHHHHHHHh---CCCEEEECCc
Confidence 99999877777776533 5888998875
No 306
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.93 E-value=0.11 Score=51.20 Aligned_cols=92 Identities=18% Similarity=0.183 Sum_probs=59.6
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCH-HhhhccCCEEEEc
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDI-YETISGSDLVLLL 185 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~-~e~i~~ADIViLa 185 (316)
-+| ++++|+|.|-+|.--.|.+++. |.+|+...+. ++..+.|++.|...- +....+. +++-+.+|+|+.+
T Consensus 165 ~pG-~~V~I~G~GGlGh~avQ~Aka~------ga~Via~~~~-~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~t 236 (339)
T COG1064 165 KPG-KWVAVVGAGGLGHMAVQYAKAM------GAEVIAITRS-EEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDT 236 (339)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEeCC-hHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEEC
Confidence 347 8999999998888888888888 8887655554 555778888885321 1111122 2333339999999
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
++ .. .++...+.++++-.++.+
T Consensus 237 v~-~~---~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 237 VG-PA---TLEPSLKALRRGGTLVLV 258 (339)
T ss_pred CC-hh---hHHHHHHHHhcCCEEEEE
Confidence 99 33 344444556666655544
No 307
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.91 E-value=0.13 Score=52.45 Aligned_cols=71 Identities=18% Similarity=0.143 Sum_probs=50.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
..+.| +++.|+|+|..|.+.++.|++. |.+|++.+++ ....+.+++.|+.... .....+.++++|+||..
T Consensus 8 ~~~~~-~~v~V~G~G~sG~aa~~~L~~~------G~~v~~~D~~-~~~~~~l~~~g~~~~~--~~~~~~~l~~~D~VV~S 77 (488)
T PRK03369 8 PLLPG-APVLVAGAGVTGRAVLAALTRF------GARPTVCDDD-PDALRPHAERGVATVS--TSDAVQQIADYALVVTS 77 (488)
T ss_pred cccCC-CeEEEEcCCHHHHHHHHHHHHC------CCEEEEEcCC-HHHHHHHHhCCCEEEc--CcchHhHhhcCCEEEEC
Confidence 45578 9999999999999999999998 9988776644 3334445666764311 11234567889998886
Q ss_pred c
Q 021218 186 I 186 (316)
Q Consensus 186 v 186 (316)
-
T Consensus 78 p 78 (488)
T PRK03369 78 P 78 (488)
T ss_pred C
Confidence 5
No 308
>PRK06270 homoserine dehydrogenase; Provisional
Probab=94.85 E-value=0.099 Score=51.10 Aligned_cols=99 Identities=18% Similarity=0.208 Sum_probs=53.2
Q ss_pred CEEEEEcccchHHHHHHHHHhh---hhh-hcCCcEEEE-EecCCc------ccHH----HHHHCCceec-C--CCcCCHH
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDS---LAE-AKSDIVVKV-GLRKGS------RSFA----EARAAGFTEE-N--GTLGDIY 173 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~---~~~-~g~G~~Viv-g~r~~~------~s~~----~A~~~G~~~~-~--~t~~~~~ 173 (316)
.+|+|||+|.||..+++.|++. +.+ .|.+++++. .+++.. -..+ .+.+.|.... + ....+.+
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 5899999999999999998764 111 122445432 332110 0111 2222232110 0 0123677
Q ss_pred hhh--ccCCEEEEcccCchHH-HH-HHHHHhcCCCCcEEEE
Q 021218 174 ETI--SGSDLVLLLISDAAQA-DN-YEKIFSCMKPNSILGL 210 (316)
Q Consensus 174 e~i--~~ADIViLavp~~~~~-~v-i~ei~~~mk~gaiLid 210 (316)
+++ .+.|+|+.++|+..+. +. .+-+...|+.|..|+.
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVt 123 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVT 123 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEc
Confidence 877 4689999999986542 22 2223344556665554
No 309
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=94.80 E-value=0.097 Score=51.03 Aligned_cols=69 Identities=13% Similarity=0.087 Sum_probs=40.1
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCCcccHHHHHHCCceecC-------CCcCCHHhhhc
Q 021218 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSRSFAEARAAGFTEEN-------GTLGDIYETIS 177 (316)
Q Consensus 113 kIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~-------~Vivg~r~~~~s~~~A~~~G~~~~~-------~t~~~~~e~i~ 177 (316)
+|+|||. |.+|.++|..|... ++ ++.+.+.........+......+.. ....+..+.++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~------~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~ 74 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG------RMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFT 74 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc------cccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhC
Confidence 5899999 99999999999875 33 3555554322111111111111000 00124467899
Q ss_pred cCCEEEEccc
Q 021218 178 GSDLVLLLIS 187 (316)
Q Consensus 178 ~ADIViLavp 187 (316)
+||+||++.-
T Consensus 75 ~aDiVVitAG 84 (324)
T TIGR01758 75 DVDVAILVGA 84 (324)
T ss_pred CCCEEEEcCC
Confidence 9999998763
No 310
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=94.79 E-value=0.019 Score=57.12 Aligned_cols=97 Identities=19% Similarity=0.151 Sum_probs=73.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
.-..| .++|+||+|..|.++++..+.+ |..|+.++..-.+-++.+.-.+++ .++.|.+-++|-+.++
T Consensus 174 ~~~~G-~~~g~~g~gr~g~av~~~A~af------g~~~ifydp~~~~g~~~~lg~~rV------ytlqd~~~~sd~~S~h 240 (435)
T KOG0067|consen 174 ARIRG-PTLGLIGFGRTGQAVALRAKAF------GFVVIFYDPYLIDGIDKSLGLQRV------YTLQDLLYQSDCVSLH 240 (435)
T ss_pred ccccc-cceeeeccccccceehhhhhcc------cceeeeecchhhhhhhhhccccee------cccchhhhhccceeee
Confidence 45567 8999999999999999999999 987666654434444555444444 3688888999999999
Q ss_pred ccCchHHH-HHHH-HHhcCCCCcEEEE-eCCch
Q 021218 186 ISDAAQAD-NYEK-IFSCMKPNSILGL-SHGFL 215 (316)
Q Consensus 186 vp~~~~~~-vi~e-i~~~mk~gaiLid-~aGv~ 215 (316)
+..+...+ +++. -...|++|+.++. +.|..
T Consensus 241 c~~~~~~h~lin~~tikqm~qGaflvnta~ggl 273 (435)
T KOG0067|consen 241 CNLNEHNHELINDFTIKQMRQGAFLVNTARGGL 273 (435)
T ss_pred cccCcccccccccccceeecccceEeeeccccc
Confidence 99999876 6663 4567999998775 44554
No 311
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=94.72 E-value=0.21 Score=49.37 Aligned_cols=95 Identities=13% Similarity=0.148 Sum_probs=55.7
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH----CCceecCCCcCCHHhh-hccCCEEEE
Q 021218 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYET-ISGSDLVLL 184 (316)
Q Consensus 111 ~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~----~G~~~~~~t~~~~~e~-i~~ADIViL 184 (316)
|+|++||| .|--|..+.+.|... ..+++.....+.......... .|.....-...+.+++ ..+||+|||
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~H-----p~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFl 76 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGH-----PDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFL 76 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcC-----CCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEE
Confidence 58999999 788899888887764 134544443222111111111 1111000001233333 456999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
|+|.....++..++.+ +|..|+|.++
T Consensus 77 alPhg~s~~~v~~l~~---~g~~VIDLSa 102 (349)
T COG0002 77 ALPHGVSAELVPELLE---AGCKVIDLSA 102 (349)
T ss_pred ecCchhHHHHHHHHHh---CCCeEEECCc
Confidence 9999999888887754 3555888765
No 312
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.71 E-value=0.086 Score=52.94 Aligned_cols=67 Identities=28% Similarity=0.277 Sum_probs=46.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+++| ++|.|||.|-.|.+.|+.|++. |++|.+.++.... ....++.|+... ..+ .+-+.++|+||.
T Consensus 5 ~~~~~-~~i~viG~G~~G~~~a~~l~~~------G~~v~~~D~~~~~-~~~l~~~g~~~~---~~~-~~~~~~~d~vv~ 71 (460)
T PRK01390 5 TGFAG-KTVAVFGLGGSGLATARALVAG------GAEVIAWDDNPAS-RAKAAAAGITTA---DLR-TADWSGFAALVL 71 (460)
T ss_pred cccCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEECCChhh-HHHHHhcCcccc---CCC-hhHHcCCCEEEE
Confidence 45788 9999999999999999999998 9987766644222 223345676521 112 234578999886
No 313
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=94.68 E-value=0.055 Score=49.45 Aligned_cols=79 Identities=9% Similarity=0.227 Sum_probs=52.4
Q ss_pred CEEEEEcccchHHHHHHHH--HhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEccc
Q 021218 112 NQIGVIGWGSQGPAQAQNL--RDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~L--r~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp 187 (316)
-++.|||.|++|.|++..- .+. +++++-..+.+++..-. +-.++... ..+++++.++ +.|+.|||+|
T Consensus 85 tnviiVG~GnlG~All~Y~f~~~~------~~~iv~~FDv~~~~VG~-~~~~v~V~--~~d~le~~v~~~dv~iaiLtVP 155 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSKKN------GMKIVAAFDVDPDKVGT-KIGDVPVY--DLDDLEKFVKKNDVEIAILTVP 155 (211)
T ss_pred eeEEEEccChHHHHHhcCcchhhc------CceEEEEecCCHHHhCc-ccCCeeee--chHHHHHHHHhcCccEEEEEcc
Confidence 5789999999999998632 234 78887777776542211 11223321 1446677777 6889999999
Q ss_pred CchHHHHHHHHH
Q 021218 188 DAAQADNYEKIF 199 (316)
Q Consensus 188 ~~~~~~vi~ei~ 199 (316)
-....++.+.+.
T Consensus 156 a~~AQ~vad~Lv 167 (211)
T COG2344 156 AEHAQEVADRLV 167 (211)
T ss_pred HHHHHHHHHHHH
Confidence 877666776543
No 314
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=94.66 E-value=0.12 Score=47.38 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=25.5
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~ 133 (316)
.+-|.. ++|.|||+|-+|..+|++|...
T Consensus 16 q~~L~~-~~VlivG~GglGs~va~~La~~ 43 (228)
T cd00757 16 QEKLKN-ARVLVVGAGGLGSPAAEYLAAA 43 (228)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc
Confidence 466778 9999999999999999999988
No 315
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.60 E-value=0.06 Score=52.82 Aligned_cols=51 Identities=25% Similarity=0.373 Sum_probs=45.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCcee
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (316)
-=+| .+++|+|+|..|.+++++.|.. |..-+++.|.+++..++|++.|+++
T Consensus 190 v~~G-stvAVfGLG~VGLav~~Gaka~------GAsrIIgvDiN~~Kf~~ak~fGaTe 240 (375)
T KOG0022|consen 190 VEPG-STVAVFGLGGVGLAVAMGAKAA------GASRIIGVDINPDKFEKAKEFGATE 240 (375)
T ss_pred cCCC-CEEEEEecchHHHHHHHhHHhc------CcccEEEEecCHHHHHHHHhcCcce
Confidence 3467 9999999999999999999999 8766889999999999999999884
No 316
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=94.59 E-value=0.19 Score=48.45 Aligned_cols=69 Identities=26% Similarity=0.349 Sum_probs=42.0
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCC--cccHHHHH-------HCCceecCCCcCCHHhhhccC
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEAR-------AAGFTEENGTLGDIYETISGS 179 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~--~~s~~~A~-------~~G~~~~~~t~~~~~e~i~~A 179 (316)
|||+|||. |.+|..++..|... |+ +|++.+++. +.....+. ..+....-....+ .+.+++|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~------g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~a 73 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE------DVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGS 73 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCC
Confidence 68999997 99999999999887 65 466666532 11111110 1111000000124 4569999
Q ss_pred CEEEEccc
Q 021218 180 DLVLLLIS 187 (316)
Q Consensus 180 DIViLavp 187 (316)
|+||++..
T Consensus 74 DiViitag 81 (309)
T cd05294 74 DIVIITAG 81 (309)
T ss_pred CEEEEecC
Confidence 99999985
No 317
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.59 E-value=0.34 Score=47.28 Aligned_cols=94 Identities=15% Similarity=0.203 Sum_probs=62.6
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-CCceecCCCcC-CHH----hhh--ccC
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLG-DIY----ETI--SGS 179 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~t~~-~~~----e~i--~~A 179 (316)
..| .++.|+|.|.||.-.++.++.. |...++..+.++..++.|++ .|......... +.. +.- ..+
T Consensus 167 ~~~-~~V~V~GaGpIGLla~~~a~~~------Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~ 239 (350)
T COG1063 167 RPG-GTVVVVGAGPIGLLAIALAKLL------GASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGA 239 (350)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCC
Confidence 344 5899999999999999888888 87555666676778889988 44321000001 111 222 359
Q ss_pred CEEEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
|++|-|+- ....+++....++++-.++.+
T Consensus 240 D~vie~~G---~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 240 DVVIEAVG---SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred CEEEECCC---CHHHHHHHHHHhcCCCEEEEE
Confidence 99999999 333566667777887766544
No 318
>PLN03075 nicotianamine synthase; Provisional
Probab=94.57 E-value=0.15 Score=49.43 Aligned_cols=120 Identities=15% Similarity=0.157 Sum_probs=73.5
Q ss_pred cccchhhHHhhcCCcccccc--ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC--
Q 021218 85 SLADRDEYIVRGGRDLFNLL--PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-- 160 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F~~~--~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~-- 160 (316)
+|.+|..|+ +=++=+|.++ ...... ++|..||+|..|-+-.-.++..+. +- .+++.+.+++..+.|++.
T Consensus 98 ~Fpy~~nY~-~L~~lE~~~L~~~~~~~p-~~VldIGcGpgpltaiilaa~~~p----~~-~~~giD~d~~ai~~Ar~~~~ 170 (296)
T PLN03075 98 LFPYYNNYL-KLSKLEFDLLSQHVNGVP-TKVAFVGSGPLPLTSIVLAKHHLP----TT-SFHNFDIDPSANDVARRLVS 170 (296)
T ss_pred cCCchHHHH-HHHHHHHHHHHHhhcCCC-CEEEEECCCCcHHHHHHHHHhcCC----CC-EEEEEeCCHHHHHHHHHHhh
Confidence 488888885 6565555544 112256 999999999988755544433311 22 356778777666666542
Q ss_pred ---Cceec-CCCcCCHHhh---hccCCEEEEccc----CchHHHHHHHHHhcCCCCcEEEEe
Q 021218 161 ---GFTEE-NGTLGDIYET---ISGSDLVLLLIS----DAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 161 ---G~~~~-~~t~~~~~e~---i~~ADIViLavp----~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
|+... .-...|..+. ..+-|+|++.+= .....++++.+..+|+||.+++.-
T Consensus 171 ~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 171 SDPDLSKRMFFHTADVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred hccCccCCcEEEECchhhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 21100 0001222222 468999999952 234456999999999999987753
No 319
>PRK06349 homoserine dehydrogenase; Provisional
Probab=94.54 E-value=0.11 Score=52.34 Aligned_cols=91 Identities=19% Similarity=0.250 Sum_probs=50.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhh----hhhcCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSL----AEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~----~~~g~G~~Vi-vg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViL 184 (316)
.+|||||+|.+|..+++.|.+.. ...|.++++. +.+++.. .++...... .....+.++++. +.|+|+.
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~----~~~~~~~~~-~~~~~d~~~ll~d~~iDvVve 78 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLE----KDRGVDLPG-ILLTTDPEELVNDPDIDIVVE 78 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChh----hccCCCCcc-cceeCCHHHHhhCCCCCEEEE
Confidence 57999999999999998886541 1122344543 3333321 111111100 001357888885 5699999
Q ss_pred cccCchH-HHHHHHHHhcCCCCcEEEE
Q 021218 185 LISDAAQ-ADNYEKIFSCMKPNSILGL 210 (316)
Q Consensus 185 avp~~~~-~~vi~ei~~~mk~gaiLid 210 (316)
+++.... .+.+. ..|+.|+.|+.
T Consensus 79 ~tg~~~~~~~~~~---~aL~~GkhVVt 102 (426)
T PRK06349 79 LMGGIEPARELIL---KALEAGKHVVT 102 (426)
T ss_pred CCCCchHHHHHHH---HHHHCCCeEEE
Confidence 9876432 23333 33456665553
No 320
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.48 E-value=0.099 Score=50.58 Aligned_cols=69 Identities=17% Similarity=0.155 Sum_probs=42.0
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHHC----Ccee-cC-CCcCCHHhhhccCCEEEE
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA----GFTE-EN-GTLGDIYETISGSDLVLL 184 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~~----G~~~-~~-~t~~~~~e~i~~ADIViL 184 (316)
||+|||.|.+|.++|..|... +. ++++.+...+.....+.+. .+.. .+ .......+.+++||+||+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvi 74 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALAL------GLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVI 74 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEE
Confidence 689999999999999998877 65 5555555433222222221 1110 00 001123567899999999
Q ss_pred ccc
Q 021218 185 LIS 187 (316)
Q Consensus 185 avp 187 (316)
+.-
T Consensus 75 taG 77 (307)
T cd05290 75 TAG 77 (307)
T ss_pred CCC
Confidence 874
No 321
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.47 E-value=1.3 Score=44.77 Aligned_cols=169 Identities=20% Similarity=0.172 Sum_probs=100.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccH--HHHHHC--Cceec----------------CCCc
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSF--AEARAA--GFTEE----------------NGTL 169 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~--~~A~~~--G~~~~----------------~~t~ 169 (316)
|.++-|+|.|..+--+|..+++. +. +|-+..|.+.++. -.+.+. +.... |...
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~------~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~ 74 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKH------GNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVF 74 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhc------cCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhh
Confidence 57899999999999999999975 32 4555666544433 222222 21110 1114
Q ss_pred CCHHhhhccCCEEEEcccCchHHHHHHHHH-hcCCC-CcEEEEeCCch----hh-hhhccccCCCCCccEEE--------
Q 021218 170 GDIYETISGSDLVLLLISDAAQADNYEKIF-SCMKP-NSILGLSHGFL----LG-HLQSMGLDFPKNIGVIA-------- 234 (316)
Q Consensus 170 ~~~~e~i~~ADIViLavp~~~~~~vi~ei~-~~mk~-gaiLid~aGv~----l~-~l~~~~~~~~~~i~vI~-------- 234 (316)
.+.+++..+=|.+|||||-++..++++++- +.++. .++|.++..+. +. ++.. ...++.||.
T Consensus 75 ~~~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~----~~~~~EVISFStY~gdT 150 (429)
T PF10100_consen 75 QDYEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLND----LGPDAEVISFSTYYGDT 150 (429)
T ss_pred cCHHHhcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHh----cCCCceEEEeecccccc
Confidence 567778888899999999999999998652 22322 22444554442 22 3332 223666763
Q ss_pred --eccCCCchhhHHHHhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHcCCCCe-eecChhHHHh
Q 021218 235 --VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT-FATTLEQEYR 299 (316)
Q Consensus 235 --vhPn~pg~~~r~lf~~G~e~~G~G~~~iiap~~d~~~~a~e~a~~l~~alG~~~~-~~tT~~~e~~ 299 (316)
.+...|-.+.-...++ ..++... +.+...++....++..+|-.-. +.+-++.|.+
T Consensus 151 r~~d~~~~~~vlt~~vK~---------kiYigSt-~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~r 208 (429)
T PF10100_consen 151 RWSDGEQPNRVLTTAVKK---------KIYIGST-HSNSPELDKLCRLLAQLGIQLEVMDNPLEAESR 208 (429)
T ss_pred eeccCCCcceehhhhhhc---------eEEEEeC-CCCChHHHHHHHHHHHcCCeEEEeCChHhhhhc
Confidence 2333333333222222 2334443 5555788888899999998754 5555666654
No 322
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=94.45 E-value=0.06 Score=53.55 Aligned_cols=67 Identities=18% Similarity=0.146 Sum_probs=43.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecC-CCcCCHHhhhccCCEEEE
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-GTLGDIYETISGSDLVLL 184 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~-~t~~~~~e~i~~ADIViL 184 (316)
|++|||||-|.+|.=|+...+.. |+++++.+... ..-........+..+ .....+.++++.||+|-.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~l------G~~v~vLdp~~-~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARL------GIKVIVLDPDA-DAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhc------CCEEEEecCCC-CCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 48999999999999999999998 99987766432 222222222222100 001246678889999864
No 323
>PLN02602 lactate dehydrogenase
Probab=94.44 E-value=0.11 Score=51.31 Aligned_cols=66 Identities=21% Similarity=0.216 Sum_probs=41.0
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHH--C-----C-ceecCCCcCCHHhhhccCCE
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--A-----G-FTEENGTLGDIYETISGSDL 181 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~--~-----G-~~~~~~t~~~~~e~i~~ADI 181 (316)
+||+|||.|.+|.++|..|... +. ++.+.+.........+.+ + + .... ...+. +.+++||+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~------~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~--~~~dy-~~~~daDi 108 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQ------DLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKIL--ASTDY-AVTAGSDL 108 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEE--eCCCH-HHhCCCCE
Confidence 5999999999999999998876 64 555555443322222211 1 1 1110 01244 44899999
Q ss_pred EEEcc
Q 021218 182 VLLLI 186 (316)
Q Consensus 182 ViLav 186 (316)
||++.
T Consensus 109 VVitA 113 (350)
T PLN02602 109 CIVTA 113 (350)
T ss_pred EEECC
Confidence 99985
No 324
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=94.42 E-value=0.19 Score=45.38 Aligned_cols=36 Identities=25% Similarity=0.235 Sum_probs=30.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~ 147 (316)
.+.|+. ++|.|||+|.+|..++++|... |+ ++.+.+
T Consensus 16 Q~~L~~-s~VlIiG~gglG~evak~La~~------GVg~i~lvD 52 (197)
T cd01492 16 QKRLRS-ARILLIGLKGLGAEIAKNLVLS------GIGSLTILD 52 (197)
T ss_pred HHHHHh-CcEEEEcCCHHHHHHHHHHHHc------CCCEEEEEE
Confidence 577888 9999999999999999999998 76 344444
No 325
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=94.41 E-value=0.076 Score=46.07 Aligned_cols=90 Identities=16% Similarity=0.204 Sum_probs=54.9
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+..+| ++|++||+ +.+ ++..|+.. +.++.+.+++... .. -...++. ..+.++++++||+|++
T Consensus 6 ~~~~~~-~~V~~VG~--f~P-~~~~l~~~------~~~v~v~d~~~~~-~~-~~~~~~~-----~~~~~~~l~~aD~vii 68 (147)
T PF04016_consen 6 LEIGPG-DKVGMVGY--FQP-LVEKLKER------GAEVRVFDLNPDN-IG-EEPGDVP-----DEDAEEILPWADVVII 68 (147)
T ss_dssp CCTTTT-SEEEEES----HC-CHHHHCCC------CSEEEEEESSGGG----SSCT-EE-----GGGHHHHGGG-SEEEE
T ss_pred hhhcCC-CEEEEEcC--cHH-HHHHHhcC------CCCEEEEECCCCC-CC-CCCCcCC-----HHHHHHHHccCCEEEE
Confidence 356678 99999997 222 66677655 7788888876432 11 1111232 3477899999999887
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
.-. +-...-+++++++.++++.++..+
T Consensus 69 TGs-TlvN~Ti~~iL~~~~~~~~vil~G 95 (147)
T PF04016_consen 69 TGS-TLVNGTIDDILELARNAREVILYG 95 (147)
T ss_dssp ECH-HCCTTTHHHHHHHTTTSSEEEEES
T ss_pred Eee-eeecCCHHHHHHhCccCCeEEEEe
Confidence 643 222246777777777777666543
No 326
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=94.38 E-value=0.22 Score=49.63 Aligned_cols=90 Identities=18% Similarity=0.271 Sum_probs=52.0
Q ss_pred CEEEEEcc-cchHHHHHHHHH-hhhhhhcCCc---EEEEEecCCcccHHHHHHCCceecCCCcCCH-H-hhhccCCEEEE
Q 021218 112 NQIGVIGW-GSQGPAQAQNLR-DSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDI-Y-ETISGSDLVLL 184 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr-~~~~~~g~G~---~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~-~-e~i~~ADIViL 184 (316)
++|||||+ |..|+.+.+.|. +. ++ +++......+ ...- ..+........+. + +.+++.|+++.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~------~fp~~~~~~~ss~~s--~g~~--~~f~~~~~~v~~~~~~~~~~~vDivff 70 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEER------DFDAIRPVFFSTSQL--GQAA--PSFGGTTGTLQDAFDIDALKALDIIIT 70 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCC------CCccccEEEEEchhh--CCCc--CCCCCCcceEEcCcccccccCCCEEEE
Confidence 58999995 999999999888 44 33 2222222111 0000 0110000011122 2 35789999999
Q ss_pred cccCchHHHHHHHHHhcCCCC--cEEEEeCCc
Q 021218 185 LISDAAQADNYEKIFSCMKPN--SILGLSHGF 214 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~g--aiLid~aGv 214 (316)
+.+.....++..+.. +.| ++|+|.++.
T Consensus 71 a~g~~~s~~~~p~~~---~aG~~~~VIDnSSa 99 (366)
T TIGR01745 71 CQGGDYTNEIYPKLR---ESGWQGYWIDAASS 99 (366)
T ss_pred cCCHHHHHHHHHHHH---hCCCCeEEEECChh
Confidence 998775555666544 357 788888763
No 327
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=94.35 E-value=0.3 Score=42.70 Aligned_cols=69 Identities=22% Similarity=0.213 Sum_probs=49.1
Q ss_pred CCCCEEEEEc--ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc---c---cH----HHHHHCCc--eecCCCcCCHHh
Q 021218 109 NGINQIGVIG--WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS---R---SF----AEARAAGF--TEENGTLGDIYE 174 (316)
Q Consensus 109 ~G~kkIGIIG--~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~---~---s~----~~A~~~G~--~~~~~t~~~~~e 174 (316)
+| +||++|| .+++..|++..+..+ |+++.+....+- . .. +.+.+.|. .. ..+.+|
T Consensus 1 ~g-l~i~~vGD~~~rv~~Sl~~~~~~~------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~----~~~~~e 69 (158)
T PF00185_consen 1 KG-LKIAYVGDGHNRVAHSLIELLAKF------GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITI----TDDIEE 69 (158)
T ss_dssp TT-EEEEEESSTTSHHHHHHHHHHHHT------TSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEE----ESSHHH
T ss_pred CC-CEEEEECCCCChHHHHHHHHHHHc------CCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEE----EeCHHH
Confidence 58 9999999 379999999999999 998766655441 1 12 22333342 22 468999
Q ss_pred hhccCCEEEEcccC
Q 021218 175 TISGSDLVLLLISD 188 (316)
Q Consensus 175 ~i~~ADIViLavp~ 188 (316)
+++++|+|..-.-.
T Consensus 70 ~l~~aDvvy~~~~~ 83 (158)
T PF00185_consen 70 ALKGADVVYTDRWQ 83 (158)
T ss_dssp HHTT-SEEEEESSS
T ss_pred hcCCCCEEEEcCcc
Confidence 99999998887665
No 328
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=94.32 E-value=0.23 Score=46.96 Aligned_cols=88 Identities=9% Similarity=0.002 Sum_probs=59.1
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
.+| +++.|+|.|.+|...++.++.. |.++++..+.++...+.+.+..+.. ..++.-...|+|+=++.
T Consensus 143 ~~~-~~vlV~G~G~vG~~a~q~ak~~------G~~~v~~~~~~~~rl~~a~~~~~i~------~~~~~~~g~Dvvid~~G 209 (308)
T TIGR01202 143 VKV-LPDLIVGHGTLGRLLARLTKAA------GGSPPAVWETNPRRRDGATGYEVLD------PEKDPRRDYRAIYDASG 209 (308)
T ss_pred cCC-CcEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHhhhhccccC------hhhccCCCCCEEEECCC
Confidence 367 8999999999999999999988 8875555555555555565544331 11112235899999887
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEe
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
... .+++.++.++++..++.+
T Consensus 210 ~~~---~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 210 DPS---LIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred CHH---HHHHHHHhhhcCcEEEEE
Confidence 543 345555667777766644
No 329
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.32 E-value=0.15 Score=51.87 Aligned_cols=74 Identities=24% Similarity=0.238 Sum_probs=49.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc-ccHHHHHHC--CceecCCCcCCHHhhhccCCEEE
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAA--GFTEENGTLGDIYETISGSDLVL 183 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~-~s~~~A~~~--G~~~~~~t~~~~~e~i~~ADIVi 183 (316)
++.+ ++|.|||.|..|.++|+.|++. |++|.+.+.+.. +..+..++. |+....+ ....+.+.++|+||
T Consensus 4 ~~~~-~~i~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g--~~~~~~~~~~d~vv 74 (498)
T PRK02006 4 DLQG-PMVLVLGLGESGLAMARWCARH------GARLRVADTREAPPNLAALRAELPDAEFVGG--PFDPALLDGVDLVA 74 (498)
T ss_pred ccCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEEcCCCCchhHHHHHhhcCCcEEEeC--CCchhHhcCCCEEE
Confidence 4677 9999999999999999999999 998876664432 122223333 3332111 12345677899999
Q ss_pred Ec--ccCc
Q 021218 184 LL--ISDA 189 (316)
Q Consensus 184 La--vp~~ 189 (316)
+. +|+.
T Consensus 75 ~sp~I~~~ 82 (498)
T PRK02006 75 LSPGLSPL 82 (498)
T ss_pred ECCCCCCc
Confidence 96 5653
No 330
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.32 E-value=0.17 Score=49.94 Aligned_cols=92 Identities=15% Similarity=0.135 Sum_probs=66.3
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEE-EEEecCCcccHHHHHHCCceecCCCcCCHHhhhccC--CEEEEcccC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV-KVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS--DLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~V-ivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~A--DIViLavp~ 188 (316)
-++||+|+|.|+.-.++.|.-. .++ ++.| -++.+..+...+.|.+.++.. -....+.+|++++. |+|.+.+|.
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~-p~s--~~~Ivava~~s~~~A~~fAq~~~~~~-~k~y~syEeLakd~~vDvVyi~~~~ 82 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTL-PES--NHQIVAVADPSLERAKEFAQRHNIPN-PKAYGSYEELAKDPEVDVVYISTPN 82 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccC-ccc--CcEEEEEecccHHHHHHHHHhcCCCC-CccccCHHHHhcCCCcCEEEeCCCC
Confidence 4789999999999999998764 221 4544 344555556677888888831 12367899999876 999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEE
Q 021218 189 AAQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 189 ~~~~~vi~ei~~~mk~gaiLi 209 (316)
..+.++.-..+.+=|+ +|.
T Consensus 83 ~qH~evv~l~l~~~K~--VL~ 101 (351)
T KOG2741|consen 83 PQHYEVVMLALNKGKH--VLC 101 (351)
T ss_pred ccHHHHHHHHHHcCCc--EEe
Confidence 9998877655554333 444
No 331
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.32 E-value=0.44 Score=45.57 Aligned_cols=94 Identities=14% Similarity=0.147 Sum_probs=62.1
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc---cCCEE
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS---GSDLV 182 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~-Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i~---~ADIV 182 (316)
.+| +++.|+|.|.+|...++.++.. |.+ |++.. .+++..+.+++.|...- +....+..+..+ ..|+|
T Consensus 168 ~~g-~~VlV~G~G~vG~~aiqlak~~------G~~~Vi~~~-~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~v 239 (343)
T PRK09880 168 LQG-KRVFVSGVGPIGCLIVAAVKTL------GAAEIVCAD-VSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVS 239 (343)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEEe-CCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEE
Confidence 468 9999999999999999999988 874 54444 44566788888886321 101112333332 27999
Q ss_pred EEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 183 iLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+=++... ..++...+.++++..++.++
T Consensus 240 id~~G~~---~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 240 FEVSGHP---SSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred EECCCCH---HHHHHHHHHhhcCCEEEEEc
Confidence 9888743 24455556677877766553
No 332
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=94.30 E-value=0.19 Score=48.66 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=53.3
Q ss_pred cccCCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCcEEEEEecCCc----ccHHHHHHCCceecCCCcCCHHhhhcc
Q 021218 106 DAFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISG 178 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G---~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~----~s~~~A~~~G~~~~~~t~~~~~e~i~~ 178 (316)
..++| .+|++||-| ++..|++..+... |+++.+...++- ...+.+++.|...+ ...++++++++
T Consensus 146 g~l~g-~~va~vGD~~~~~v~~Sl~~~~a~~------g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~~a~~~ 216 (301)
T TIGR00670 146 GRLDG-LKIALVGDLKYGRTVHSLAEALTRF------GVEVYLISPEELRMPKEILEELKAKGIKVR--ETESLEEVIDE 216 (301)
T ss_pred CCCCC-CEEEEEccCCCCcHHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHcCCEEE--EECCHHHHhCC
Confidence 45888 999999985 9999999999998 998887765432 22345556664321 14689999999
Q ss_pred CCEEEEc
Q 021218 179 SDLVLLL 185 (316)
Q Consensus 179 ADIViLa 185 (316)
||+|..-
T Consensus 217 aDvvyt~ 223 (301)
T TIGR00670 217 ADVLYVT 223 (301)
T ss_pred CCEEEEC
Confidence 9999874
No 333
>PRK05086 malate dehydrogenase; Provisional
Probab=94.30 E-value=0.39 Score=46.48 Aligned_cols=73 Identities=18% Similarity=0.164 Sum_probs=41.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCccc----HHHHH-HCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAEAR-AAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s----~~~A~-~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
|||+|||. |.+|.+++..|...+ +.+.++.+.+++ +.. .+... ............++.+.++++|+||++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~---~~~~el~L~d~~-~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIit 76 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQL---PAGSELSLYDIA-PVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLIS 76 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCC---CCccEEEEEecC-CCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEc
Confidence 68999999 999999998885421 113355555544 322 12111 000110000013556788999999998
Q ss_pred ccC
Q 021218 186 ISD 188 (316)
Q Consensus 186 vp~ 188 (316)
.-.
T Consensus 77 aG~ 79 (312)
T PRK05086 77 AGV 79 (312)
T ss_pred CCC
Confidence 753
No 334
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=94.28 E-value=0.29 Score=45.07 Aligned_cols=81 Identities=17% Similarity=0.070 Sum_probs=56.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC-cccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
-+|+| +++.|||.|..|..=++.+.+. |-+|++....- ++......+.++...+ ...+.++ +..+++|+.
T Consensus 8 ~~l~~-k~VlvvGgG~va~rKa~~ll~~------ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~-~~~~~lvia 78 (210)
T COG1648 8 LDLEG-KKVLVVGGGSVALRKARLLLKA------GADVTVVSPEFEPELKALIEEGKIKWIE-REFDAED-LDDAFLVIA 78 (210)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHhc------CCEEEEEcCCccHHHHHHHHhcCcchhh-cccChhh-hcCceEEEE
Confidence 68999 9999999999999999999888 88777766554 3333344444422111 1223444 445999999
Q ss_pred cccCchHHHHH
Q 021218 185 LISDAAQADNY 195 (316)
Q Consensus 185 avp~~~~~~vi 195 (316)
++.+....+-+
T Consensus 79 At~d~~ln~~i 89 (210)
T COG1648 79 ATDDEELNERI 89 (210)
T ss_pred eCCCHHHHHHH
Confidence 99998876633
No 335
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=94.26 E-value=0.32 Score=49.90 Aligned_cols=102 Identities=16% Similarity=0.224 Sum_probs=67.9
Q ss_pred cccCCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC-----cee------
Q 021218 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-----FTE------ 164 (316)
Q Consensus 106 ~~l~G~kkIGIIG~----------G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G-----~~~------ 164 (316)
..++| ++|+|.|+ .+-...+++.|.+. |.+|.+++..-. ..+.....+ +..
T Consensus 320 ~~~~~-~~VavlGlafK~~tdD~R~Spa~~li~~L~~~------G~~V~~~DP~v~-~~~~~~~~~~~~~~~~~~~~~~~ 391 (473)
T PLN02353 320 NTVSG-KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGD------KAKLSIYDPQVT-EEQIQRDLSMNKFDWDHPRHLQP 391 (473)
T ss_pred cccCC-CEEEEEeeeecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCC-hHHHHHHhhcccccccccccccc
Confidence 35889 99999997 45667778888877 988877765422 111111111 100
Q ss_pred -------cCCCcCCHHhhhccCCEEEEcccCchHHHH-HHHHHhcCCCCcEEEEeCCch
Q 021218 165 -------ENGTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 165 -------~~~t~~~~~e~i~~ADIViLavp~~~~~~v-i~ei~~~mk~gaiLid~aGv~ 215 (316)
.-..+.+..+++++||+|++++.-....++ ++++.+.|++..+|+|..++.
T Consensus 392 ~~~~~~~~~~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~rn~l 450 (473)
T PLN02353 392 MSPTAVKQVSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNVL 450 (473)
T ss_pred cccccccceeeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECCCCC
Confidence 000133557899999999999998887763 567777787666888987764
No 336
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=94.25 E-value=0.19 Score=49.47 Aligned_cols=86 Identities=12% Similarity=0.049 Sum_probs=58.4
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEE-EecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc---
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS--- 187 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Viv-g~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp--- 187 (316)
.+|||||. .+|...+.++++. ..+.+++. .++..++..+.|++.|+.. ..+.+|++++.|++++++|
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~----~~~~eLvaV~d~~~erA~~~A~~~gi~~----y~~~eell~d~Di~~V~ipt~~ 74 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAA----PERFELAGILAQGSERSRALAHRLGVPL----YCEVEELPDDIDIACVVVRSAI 74 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhC----CCCcEEEEEEcCCHHHHHHHHHHhCCCc----cCCHHHHhcCCCEEEEEeCCCC
Confidence 68999999 5799999888875 11355543 3444455567788888752 6799999988888888875
Q ss_pred -CchHHHHHHHHHhcCCCCcEEE
Q 021218 188 -DAAQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 188 -~~~~~~vi~ei~~~mk~gaiLi 209 (316)
+..+.++..+. |+.|+-|.
T Consensus 75 P~~~H~e~a~~a---L~aGkHVL 94 (343)
T TIGR01761 75 VGGQGSALARAL---LARGIHVL 94 (343)
T ss_pred CCccHHHHHHHH---HhCCCeEE
Confidence 34555655544 34565544
No 337
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.24 E-value=0.18 Score=48.47 Aligned_cols=85 Identities=16% Similarity=0.194 Sum_probs=59.8
Q ss_pred CCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCc
Q 021218 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (316)
Q Consensus 110 G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~ 189 (316)
| ++|+|||--.=-..+++.|.+. |++|.++.-.++. . ...|... ..+.+++++++|+|++.+|+.
T Consensus 2 ~-~~~~v~ggd~r~~~~~~~l~~~------G~~v~~~g~~~~~---~-~~~g~~~----~~~~~~~~~~ad~ii~~~p~~ 66 (296)
T PRK08306 2 G-KHIAVIGGDARQLELIRKLVEL------GAKVSLVGFDQLD---H-GFTGATK----SSSLEEALSDVDVIILPVPGT 66 (296)
T ss_pred C-cEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeccccc---c-ccCCcee----eccHHHHhccCCEEEECCccc
Confidence 6 8999999888888889999998 9988764332211 1 2346553 346788899999999999974
Q ss_pred hHH----------H-HH-HHHHhcCCCCcEEE
Q 021218 190 AQA----------D-NY-EKIFSCMKPNSILG 209 (316)
Q Consensus 190 ~~~----------~-vi-~ei~~~mk~gaiLi 209 (316)
... + .+ .+.++.|++++++.
T Consensus 67 ~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~ 98 (296)
T PRK08306 67 NDEGNVDTVFSNEKLVLTEELLELTPEHCTIF 98 (296)
T ss_pred cCCceeeccccccCCcchHHHHHhcCCCCEEE
Confidence 211 1 12 36788899998554
No 338
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.23 E-value=0.18 Score=49.11 Aligned_cols=68 Identities=12% Similarity=0.076 Sum_probs=39.5
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCc-------EEEEEecCCcccHHHHHHCCceec------C-CCcCCHHhhhc
Q 021218 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSRSFAEARAAGFTEE------N-GTLGDIYETIS 177 (316)
Q Consensus 113 kIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~-------~Vivg~r~~~~s~~~A~~~G~~~~------~-~t~~~~~e~i~ 177 (316)
||+|||. |.+|.+++..|... ++ ++.+.+.+..............+. + ....+..+.++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~------~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~ 75 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASG------ELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFK 75 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhC------CccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhC
Confidence 7999999 99999999998865 32 355555443100001111101000 0 00135678899
Q ss_pred cCCEEEEcc
Q 021218 178 GSDLVLLLI 186 (316)
Q Consensus 178 ~ADIViLav 186 (316)
+||+||++.
T Consensus 76 ~aDiVVitA 84 (323)
T cd00704 76 DVDVAILVG 84 (323)
T ss_pred CCCEEEEeC
Confidence 999999875
No 339
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=94.19 E-value=0.3 Score=47.47 Aligned_cols=68 Identities=15% Similarity=0.114 Sum_probs=40.9
Q ss_pred EEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcc--cHHHHHHCCce---ecCCCc-CCHHhhhccCCEEE
Q 021218 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSR--SFAEARAAGFT---EENGTL-GDIYETISGSDLVL 183 (316)
Q Consensus 113 kIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~--s~~~A~~~G~~---~~~~t~-~~~~e~i~~ADIVi 183 (316)
||+|||. |.+|.++|..|... ++ ++++.+.+... .++. .++.. ....+. .+..+.+++||+|+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~------~~~~elvL~Di~~a~g~a~DL--~~~~~~~~i~~~~~~~~~~~~~~daDivv 72 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ------PYVSELSLYDIAGAAGVAADL--SHIPTAASVKGFSGEEGLENALKGADVVV 72 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC------CCCcEEEEecCCCCcEEEchh--hcCCcCceEEEecCCCchHHHcCCCCEEE
Confidence 6899999 99999999998776 54 55555543211 1111 11111 000000 12367899999999
Q ss_pred EcccC
Q 021218 184 LLISD 188 (316)
Q Consensus 184 Lavp~ 188 (316)
++.-.
T Consensus 73 itaG~ 77 (312)
T TIGR01772 73 IPAGV 77 (312)
T ss_pred EeCCC
Confidence 88743
No 340
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=94.18 E-value=0.09 Score=51.66 Aligned_cols=65 Identities=22% Similarity=0.178 Sum_probs=42.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhhccCCEEEE
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLL 184 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~---~~e~i~~ADIViL 184 (316)
|++|||||.|.+|.-+++.+++. |++|++.+......... ........ ...| +.++++.+|+|..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~l------G~~v~~~d~~~~~pa~~-~ad~~~~~--~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPL------GYKVIVLDPDPDSPAAQ-VADEVIVA--DYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCEEEEEeCCCCCchhH-hCceEEec--CCCCHHHHHHHHhcCCEEEe
Confidence 58999999999999999999998 99987776543221111 11112210 1223 5567788998754
No 341
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=94.16 E-value=0.23 Score=46.45 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=26.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~ 133 (316)
.+.|+. ++|.|||+|-+|..++++|...
T Consensus 27 Q~~L~~-~~VliiG~GglGs~va~~La~~ 54 (245)
T PRK05690 27 QEKLKA-ARVLVVGLGGLGCAASQYLAAA 54 (245)
T ss_pred HHHhcC-CeEEEECCCHHHHHHHHHHHHc
Confidence 477888 9999999999999999999988
No 342
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.16 E-value=0.13 Score=43.15 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=25.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEec
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r 148 (316)
++|.|||+|.+|..++++|... |+ ++.+.++
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~------Gv~~i~lvD~ 34 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS------GVGKITLVDD 34 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH------TTSEEEEEES
T ss_pred CEEEEECcCHHHHHHHHHHHHh------CCCceeecCC
Confidence 7899999999999999999998 76 4555543
No 343
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.11 E-value=0.19 Score=50.00 Aligned_cols=71 Identities=21% Similarity=0.181 Sum_probs=47.4
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcc---cHHHHHHCCceecCCCcCCHHhhhcc-CCEE
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR---SFAEARAAGFTEENGTLGDIYETISG-SDLV 182 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~---s~~~A~~~G~~~~~~t~~~~~e~i~~-ADIV 182 (316)
+++| +++.|+|.|.+|.+.|+.|.+. |.+|.+.++.... ..+...+.|+....+ ....+++.+ .|+|
T Consensus 2 ~~~~-k~v~v~G~g~~G~s~a~~l~~~------G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~--~~~~~~~~~~~d~v 72 (447)
T PRK02472 2 EYQN-KKVLVLGLAKSGYAAAKLLHKL------GANVTVNDGKPFSENPEAQELLEEGIKVICG--SHPLELLDEDFDLM 72 (447)
T ss_pred CcCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEcCCCccchhHHHHHHhcCCEEEeC--CCCHHHhcCcCCEE
Confidence 4678 9999999999999999999999 9988777654322 113334456542111 123344454 8988
Q ss_pred EEcc
Q 021218 183 LLLI 186 (316)
Q Consensus 183 iLav 186 (316)
|...
T Consensus 73 V~s~ 76 (447)
T PRK02472 73 VKNP 76 (447)
T ss_pred EECC
Confidence 8755
No 344
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=94.10 E-value=0.13 Score=50.46 Aligned_cols=89 Identities=19% Similarity=0.154 Sum_probs=54.8
Q ss_pred CEEEEEc-ccchHHHHHHHHHhh-hhhhcCCcEEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhh-hccCCEEEEcc
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~-~~~~g~G~~Vivg~r~~~--~s~~~A~~~G~~~~~~t~~~~~e~-i~~ADIViLav 186 (316)
++|+||| .|..|..+.+.|... +. ..++.......+ +.....- .... ..+.++. .+++|++++++
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~~hP----~~~l~~laS~~saG~~~~~~~-~~~~-----v~~~~~~~~~~~Dvvf~a~ 74 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAERQFP----VGELYALASEESAGETLRFGG-KSVT-----VQDAAEFDWSQAQLAFFVA 74 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcCCCC----ceEEEEEEccCcCCceEEECC-cceE-----EEeCchhhccCCCEEEECC
Confidence 7999999 599999999998874 10 124333322211 1111000 0111 2233333 37899999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
|.....++.++..+ .|..|+|.++
T Consensus 75 p~~~s~~~~~~~~~---~g~~VIDlS~ 98 (336)
T PRK08040 75 GREASAAYAEEATN---AGCLVIDSSG 98 (336)
T ss_pred CHHHHHHHHHHHHH---CCCEEEECCh
Confidence 98877777776644 5888998876
No 345
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=94.09 E-value=0.28 Score=44.32 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=29.7
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~ 147 (316)
.+-|+. .+|.|||+|.+|..++++|... |. ++.+.+
T Consensus 14 q~~L~~-s~VlviG~gglGsevak~L~~~------GVg~i~lvD 50 (198)
T cd01485 14 QNKLRS-AKVLIIGAGALGAEIAKNLVLA------GIDSITIVD 50 (198)
T ss_pred HHHHhh-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEE
Confidence 467788 9999999999999999999998 76 344444
No 346
>PRK15076 alpha-galactosidase; Provisional
Probab=94.07 E-value=0.066 Score=54.19 Aligned_cols=76 Identities=20% Similarity=0.207 Sum_probs=43.3
Q ss_pred CCEEEEEcccchHHHHHH--HHHhhhhhhcCCcEEEEEecCCcccHHHH--------HHCCceecCCCcCCHHhhhccCC
Q 021218 111 INQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEA--------RAAGFTEENGTLGDIYETISGSD 180 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~--~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A--------~~~G~~~~~~t~~~~~e~i~~AD 180 (316)
|+||+|||.|+||.+.+. .+... ..-.+.+|++.+.. ++..+.+ ...+...+-..+.|..+++++||
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~--~~l~~~evvLvDid-~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dAD 77 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSV--PALRDAEIALMDID-PERLEESEIVARKLAESLGASAKITATTDRREALQGAD 77 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhC--ccCCCCEEEEECCC-HHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCC
Confidence 579999999999866655 44311 01114466666544 3222211 11221100011457789999999
Q ss_pred EEEEcccCc
Q 021218 181 LVLLLISDA 189 (316)
Q Consensus 181 IViLavp~~ 189 (316)
+|+.++-..
T Consensus 78 fVv~ti~vg 86 (431)
T PRK15076 78 YVINAIQVG 86 (431)
T ss_pred EEeEeeeeC
Confidence 999988653
No 347
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.05 E-value=0.41 Score=44.52 Aligned_cols=93 Identities=17% Similarity=0.135 Sum_probs=56.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh------ccCCE
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI------SGSDL 181 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i------~~ADI 181 (316)
.+| .++.|+|.|.+|...++.++.. |.+.++..+.+++..+.+++.|...--. ..+..+.+ ...|+
T Consensus 119 ~~g-~~VlV~G~G~vG~~~~~~ak~~------G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~-~~~~~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 119 LKG-RRVLVVGAGMLGLTAAAAAAAA------GAARVVAADPSPDRRELALSFGATALAE-PEVLAERQGGLQNGRGVDV 190 (280)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHcCCcEecC-chhhHHHHHHHhCCCCCCE
Confidence 378 9999999999999999999998 8763334355556677888888632000 01111111 23677
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
|+-++.... .+++..+.++++..++..
T Consensus 191 vid~~G~~~---~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 191 ALEFSGATA---AVRACLESLDVGGTAVLA 217 (280)
T ss_pred EEECCCChH---HHHHHHHHhcCCCEEEEe
Confidence 777664322 334444455665555544
No 348
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=94.04 E-value=0.19 Score=46.02 Aligned_cols=69 Identities=19% Similarity=0.243 Sum_probs=47.8
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCc---CCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL---GDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~---~~~~e~i~~ADIViLavp 187 (316)
|||+||| .|..|..+++-+.+. |++|....|+.++.. ...+........ ....+.+..-|+||.+.-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R------GHeVTAivRn~~K~~---~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR------GHEVTAIVRNASKLA---ARQGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC------CCeeEEEEeChHhcc---ccccceeecccccChhhhHhhhcCCceEEEecc
Confidence 7999999 799999999999999 999887777654322 113331111112 233467889999999875
Q ss_pred Cc
Q 021218 188 DA 189 (316)
Q Consensus 188 ~~ 189 (316)
..
T Consensus 72 ~~ 73 (211)
T COG2910 72 AG 73 (211)
T ss_pred CC
Confidence 44
No 349
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=93.99 E-value=0.34 Score=48.34 Aligned_cols=157 Identities=11% Similarity=0.088 Sum_probs=81.4
Q ss_pred CCEEEEEc-ccchHHHHHH-HHHhhhhhhcCCcE---EEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 111 INQIGVIG-WGSQGPAQAQ-NLRDSLAEAKSDIV---VKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 111 ~kkIGIIG-~G~mG~AlA~-~Lr~~~~~~g~G~~---Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
|++||||| .|..|+.+.+ .|... .+. +.......+ ......-.|....-....+ .+.++++|+++++
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~------~f~~~~l~~~ss~~s-g~~~~~f~g~~~~v~~~~~-~~~~~~~Divf~a 72 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEEN------DFDLIEPVFFSTSQA-GGAAPSFGGKEGTLQDAFD-IDALKKLDIIITC 72 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCC------CCCcCcEEEecchhh-CCcccccCCCcceEEecCC-hhHhcCCCEEEEC
Confidence 57999999 5999999997 55554 443 443222111 0000000111000000112 2446889999999
Q ss_pred ccCchHHHHHHHHHhcCCCC--cEEEEeCCch-------hh--hhhcccc--CCCCCccEEEeccCCCchh----hHHHH
Q 021218 186 ISDAAQADNYEKIFSCMKPN--SILGLSHGFL-------LG--HLQSMGL--DFPKNIGVIAVCPKGMGPS----VRRLY 248 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~g--aiLid~aGv~-------l~--~l~~~~~--~~~~~i~vI~vhPn~pg~~----~r~lf 248 (316)
+|.....++..+..+ .| ++|+|.++.- +. .++...+ ....++++|. .||+.... +.-+.
T Consensus 73 ~~~~~s~~~~~~~~~---aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~~g~~iIa-nPnC~tt~~~laL~PL~ 148 (369)
T PRK06598 73 QGGDYTNEVYPKLRA---AGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALANGVKTFV-GGNCTVSLMLMALGGLF 148 (369)
T ss_pred CCHHHHHHHHHHHHh---CCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhhcCCCEEE-cCChHHHHHHHHHHHHH
Confidence 998877777776544 47 6788887532 00 0110000 0011222333 66654443 33354
Q ss_pred hcCccccCCCc-eEEEeeccCCCHHHHHHHHHHHHHcC
Q 021218 249 VQGKEINGAGI-NSSFAVHQDVDGRATNVALGWSVALG 285 (316)
Q Consensus 249 ~~G~e~~G~G~-~~iiap~~d~~~~a~e~a~~l~~alG 285 (316)
..+ ++ ..+++--|-+++....-+.+|.....
T Consensus 149 ~~~------~i~~viVst~qavSGAG~~g~~eL~~qt~ 180 (369)
T PRK06598 149 KND------LVEWVSVMTYQAASGAGARNMRELLTQMG 180 (369)
T ss_pred hcC------CceEEEEEeeecccccCHHHHHHHHHHHH
Confidence 443 22 35566677777777666666666554
No 350
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=93.96 E-value=0.36 Score=46.60 Aligned_cols=90 Identities=14% Similarity=0.248 Sum_probs=65.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC--cccHHHHHHCCceecCCCcCCHHhhhcc--CCEEEEcc
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--SRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~--~~s~~~A~~~G~~~~~~t~~~~~e~i~~--ADIViLav 186 (316)
.+|.|.| .|.+|..+.++|.++ |+.+++...+. .. +-.|+.. +.++.|+-.. .|+.++++
T Consensus 9 ~~~~v~~~~~~~g~~~l~~l~~~------g~~~v~pVnp~~~~~-----~v~G~~~----y~sv~dlp~~~~~DlAvi~v 73 (291)
T PRK05678 9 TKVIVQGITGKQGTFHTEQMLAY------GTNIVGGVTPGKGGT-----TVLGLPV----FNTVAEAVEATGANASVIYV 73 (291)
T ss_pred CeEEEeCCCchHHHHHHHHHHHC------CCCEEEEECCCCCCC-----eEeCeec----cCCHHHHhhccCCCEEEEEc
Confidence 5788999 588999999999998 77644444443 11 1245553 5678887765 89999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeCCchhh
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~aGv~l~ 217 (316)
|+....+.+++... ..-...++.++||.+.
T Consensus 74 p~~~v~~~l~e~~~-~gvk~avI~s~Gf~~~ 103 (291)
T PRK05678 74 PPPFAADAILEAID-AGIDLIVCITEGIPVL 103 (291)
T ss_pred CHHHHHHHHHHHHH-CCCCEEEEECCCCCHH
Confidence 99999999988665 2334577889998643
No 351
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=93.92 E-value=0.24 Score=47.53 Aligned_cols=124 Identities=17% Similarity=0.158 Sum_probs=58.9
Q ss_pred cccchhhHHhhcCCccccccccccCC--CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC--
Q 021218 85 SLADRDEYIVRGGRDLFNLLPDAFNG--INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-- 160 (316)
Q Consensus 85 ~l~~~~e~vv~~G~w~F~~~~~~l~G--~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~-- 160 (316)
.|.+|..|. +=-+=.|..+ ....+ -++|.|||.|.+--+...-.+.. +.+.. +.+.+.++...+.+++.
T Consensus 95 ~FpYy~nY~-~L~~lE~~~l-~~~~~~~p~rVaFIGSGPLPlT~i~la~~~----~~~~~-v~~iD~d~~A~~~a~~lv~ 167 (276)
T PF03059_consen 95 SFPYYPNYE-KLVRLEYAAL-RIHAGDPPSRVAFIGSGPLPLTSIVLAKQH----GPGAR-VHNIDIDPEANELARRLVA 167 (276)
T ss_dssp TSTTHHHHH-HHHHHHHH-H-TT--TT---EEEEE---SS-HHHHHHH--H----TT--E-EEEEESSHHHHHHHHHHHH
T ss_pred cCCcHHHHH-HHHHHHHHHH-hhcCCcccceEEEEcCCCcchHHHHHHHHh----CCCCe-EEEEeCCHHHHHHHHHHHh
Confidence 577888775 3222223222 11112 04999999999988777666554 11333 45666666555554321
Q ss_pred ---C----ceecCCCcCCHHhhhccCCEEEEcccCc----hHHHHHHHHHhcCCCCcEEE--EeCCch
Q 021218 161 ---G----FTEENGTLGDIYETISGSDLVLLLISDA----AQADNYEKIFSCMKPNSILG--LSHGFL 215 (316)
Q Consensus 161 ---G----~~~~~~t~~~~~e~i~~ADIViLavp~~----~~~~vi~ei~~~mk~gaiLi--d~aGv~ 215 (316)
| .....+...+...-+++.|+|+++.-.. .-.++++.+..+|++|+.|+ -.+|..
T Consensus 168 ~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR 235 (276)
T PF03059_consen 168 SDLGLSKRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLR 235 (276)
T ss_dssp ---HH-SSEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGG
T ss_pred hcccccCCeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhH
Confidence 1 1110000112223357899999998877 55569999999999999877 456654
No 352
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.92 E-value=0.16 Score=49.28 Aligned_cols=70 Identities=11% Similarity=0.113 Sum_probs=41.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCC--cccHHHHHHCC-ceecCC-CcCCHHhhhccCCEEEE
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEARAAG-FTEENG-TLGDIYETISGSDLVLL 184 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~--~~s~~~A~~~G-~~~~~~-t~~~~~e~i~~ADIViL 184 (316)
+||+|||. |++|.++|..|... ++ ++++.+.+. ...++...... ...... ...+..+.+++||+||+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~------~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvi 74 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLN------PLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVI 74 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEE
Confidence 58999999 99999999998876 64 455444331 11122211111 111000 01233678999999998
Q ss_pred ccc
Q 021218 185 LIS 187 (316)
Q Consensus 185 avp 187 (316)
+.-
T Consensus 75 taG 77 (310)
T cd01337 75 PAG 77 (310)
T ss_pred eCC
Confidence 763
No 353
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=93.76 E-value=0.25 Score=48.37 Aligned_cols=92 Identities=14% Similarity=0.123 Sum_probs=54.1
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCcccH-HHHHHCCcee--------cCCC--cCCHHhhhcc
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSF-AEARAAGFTE--------ENGT--LGDIYETISG 178 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G-~~Vivg~r~~~~s~-~~A~~~G~~~--------~~~t--~~~~~e~i~~ 178 (316)
++|+|+| .|.+|..+++.|.+. . +++....+..+..- ......++.. .+-. ..+. +.+++
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~------p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~ 76 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANH------PWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDP-EAVDD 76 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcC------CCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCH-HHhcC
Confidence 7999998 899999999998865 3 35443323221100 0100011100 0000 1133 34589
Q ss_pred CCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 179 ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
+|+|++++|.....++.+++.. .|..++|.+|
T Consensus 77 ~DvVf~a~p~~~s~~~~~~~~~---~G~~vIDls~ 108 (349)
T PRK08664 77 VDIVFSALPSDVAGEVEEEFAK---AGKPVFSNAS 108 (349)
T ss_pred CCEEEEeCChhHHHHHHHHHHH---CCCEEEECCc
Confidence 9999999999877666655433 4777888776
No 354
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=93.68 E-value=0.6 Score=39.26 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=24.1
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~ 147 (316)
+|.|||+|.+|..++++|... |. ++.+.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~------Gv~~i~ivD 30 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS------GVGKITLID 30 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCEEEEEc
Confidence 588999999999999999998 76 455544
No 355
>PRK08328 hypothetical protein; Provisional
Probab=93.68 E-value=0.38 Score=44.49 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=26.1
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~ 133 (316)
...|++ ++|.|||+|-+|..++++|...
T Consensus 22 q~~L~~-~~VlIiG~GGlGs~ia~~La~~ 49 (231)
T PRK08328 22 QEKLKK-AKVAVVGVGGLGSPVAYYLAAA 49 (231)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc
Confidence 577888 9999999999999999999988
No 356
>PLN00106 malate dehydrogenase
Probab=93.67 E-value=0.18 Score=49.24 Aligned_cols=70 Identities=11% Similarity=0.131 Sum_probs=42.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcCCc--EEEEEecCCccc--HHHHHHCC-ceecC-CCcCCHHhhhccCCEEEE
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRS--FAEARAAG-FTEEN-GTLGDIYETISGSDLVLL 184 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s--~~~A~~~G-~~~~~-~t~~~~~e~i~~ADIViL 184 (316)
.||+|||. |.+|.++|..|... +. ++.+.+.+.... .+...... ....+ ....+..+.+++||+||+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~------~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVi 92 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMN------PLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVII 92 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEE
Confidence 79999999 99999999999866 54 555555433111 11110010 11111 112355788999999999
Q ss_pred ccc
Q 021218 185 LIS 187 (316)
Q Consensus 185 avp 187 (316)
+.-
T Consensus 93 tAG 95 (323)
T PLN00106 93 PAG 95 (323)
T ss_pred eCC
Confidence 763
No 357
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=93.61 E-value=0.31 Score=47.62 Aligned_cols=94 Identities=10% Similarity=0.025 Sum_probs=54.7
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCC-cEEEEEecCCc-ccHHHHHHCCc-----e---ecCCCc-CCHHhhhccC
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGS-RSFAEARAAGF-----T---EENGTL-GDIYETISGS 179 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G-~~Vivg~r~~~-~s~~~A~~~G~-----~---~~~~t~-~~~~e~i~~A 179 (316)
++|+|+| .|.||..+++.|... . +++....+..+ ..........+ . ..+-.+ ...++...++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~------~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH------PYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDV 74 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccC
Confidence 4899999 599999999988765 4 45544423221 11111111110 0 000001 0122345899
Q ss_pred CEEEEcccCchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
|+|++++|.....++.++... .|..++|.+|.
T Consensus 75 DvVf~a~p~~~s~~~~~~~~~---~G~~VIDlsg~ 106 (341)
T TIGR00978 75 DIVFSALPSEVAEEVEPKLAE---AGKPVFSNASN 106 (341)
T ss_pred CEEEEeCCHHHHHHHHHHHHH---CCCEEEECChh
Confidence 999999999987777765533 47778887663
No 358
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=93.60 E-value=0.45 Score=46.24 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=73.6
Q ss_pred ccCchHHHHHHH--HHhcCCCCcEEEEeC-C---chhhhhhccccCCCCCccEEEeccCCCchhhHHHHhcCccccCCCc
Q 021218 186 ISDAAQADNYEK--IFSCMKPNSILGLSH-G---FLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (316)
Q Consensus 186 vp~~~~~~vi~e--i~~~mk~gaiLid~a-G---v~l~~l~~~~~~~~~~i~vI~vhPn~pg~~~r~lf~~G~e~~G~G~ 259 (316)
+++.....++.+ -.-.++||.+|+... | +.+.++.. ..+.+++.+||.++..+.+.+-+. .|+
T Consensus 41 vKDR~A~~mI~~Ae~~G~l~pG~tIVE~TSGNTGI~LA~vaa-----~~Gy~~iivmP~~~S~er~~~l~a------~GA 109 (300)
T COG0031 41 VKDRIALYMIEDAEKRGLLKPGGTIVEATSGNTGIALAMVAA-----AKGYRLIIVMPETMSQERRKLLRA------LGA 109 (300)
T ss_pred hhHHHHHHHHHHHHHcCCCCCCCEEEEcCCChHHHHHHHHHH-----HcCCcEEEEeCCCCCHHHHHHHHH------cCC
Confidence 444444556653 334599999999753 3 44656554 257999999999999998887776 789
Q ss_pred eEEEeec-cCCCHHHHHHHHHHHHHcCCCC------eeecChhHHHh
Q 021218 260 NSSFAVH-QDVDGRATNVALGWSVALGSPF------TFATTLEQEYR 299 (316)
Q Consensus 260 ~~iiap~-~d~~~~a~e~a~~l~~alG~~~------~~~tT~~~e~~ 299 (316)
..+++|. +.....+.++++++........ --...++.||+
T Consensus 110 evi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~ 156 (300)
T COG0031 110 EVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYE 156 (300)
T ss_pred EEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHh
Confidence 9999998 4447789999999999986422 24456666664
No 359
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=93.57 E-value=0.19 Score=51.25 Aligned_cols=71 Identities=25% Similarity=0.304 Sum_probs=48.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCccc-H--HHHHHCCceecCCCcCCHHhhhccCCEE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-F--AEARAAGFTEENGTLGDIYETISGSDLV 182 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s-~--~~A~~~G~~~~~~t~~~~~e~i~~ADIV 182 (316)
..+.| |+|.|+|+|.-|.+.++.|++. |.+|++.+.+.... . ......++....+. ...+-..++|+|
T Consensus 3 ~~~~~-~kv~V~GLG~sG~a~a~~L~~~------G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~--~~~~~~~~~d~v 73 (448)
T COG0771 3 EDFQG-KKVLVLGLGKSGLAAARFLLKL------GAEVTVSDDRPAPEGLAAQPLLLEGIEVELGS--HDDEDLAEFDLV 73 (448)
T ss_pred ccccC-CEEEEEecccccHHHHHHHHHC------CCeEEEEcCCCCccchhhhhhhccCceeecCc--cchhccccCCEE
Confidence 34557 9999999999999999999999 99988887654331 1 12223554332222 122567889999
Q ss_pred EEc
Q 021218 183 LLL 185 (316)
Q Consensus 183 iLa 185 (316)
++.
T Consensus 74 V~S 76 (448)
T COG0771 74 VKS 76 (448)
T ss_pred EEC
Confidence 985
No 360
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.55 E-value=0.23 Score=50.45 Aligned_cols=71 Identities=20% Similarity=0.221 Sum_probs=46.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHH--HHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE--ARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~--A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
.+.| ++|+|+|+|.-|.+.++.|++. |.+|++.+.++...... ..+.+.....+ ....+.+.++|+||.
T Consensus 5 ~~~~-~~v~v~G~G~sG~~~~~~l~~~------g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~d~vV~ 75 (468)
T PRK04690 5 QLEG-RRVALWGWGREGRAAYRALRAH------LPAQALTLFCNAVEAREVGALADAALLVET--EASAQRLAAFDVVVK 75 (468)
T ss_pred hcCC-CEEEEEccchhhHHHHHHHHHc------CCEEEEEcCCCcccchHHHHHhhcCEEEeC--CCChHHccCCCEEEE
Confidence 3568 9999999999999999999999 99988877543222211 12223221111 123456788999988
Q ss_pred cc
Q 021218 185 LI 186 (316)
Q Consensus 185 av 186 (316)
.-
T Consensus 76 Sp 77 (468)
T PRK04690 76 SP 77 (468)
T ss_pred CC
Confidence 54
No 361
>PRK10537 voltage-gated potassium channel; Provisional
Probab=93.55 E-value=0.45 Score=47.75 Aligned_cols=89 Identities=12% Similarity=0.072 Sum_probs=54.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC--ceecCCCcCCHHh----hhccCCEEEEc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--FTEENGTLGDIYE----TISGSDLVLLL 185 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G--~~~~~~t~~~~~e----~i~~ADIViLa 185 (316)
..+-|+|+|.+|..+++.|++. |.++++.+.+. .+...+.| ++..| ..+.+. -+++||.|+++
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~------g~~vvVId~d~---~~~~~~~g~~vI~GD--~td~e~L~~AgI~~A~aVI~~ 309 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQR------GQAVTVIVPLG---LEHRLPDDADLIPGD--SSDSAVLKKAGAARARAILAL 309 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHC------CCCEEEEECch---hhhhccCCCcEEEeC--CCCHHHHHhcCcccCCEEEEc
Confidence 4688999999999999999988 87766665431 22333334 33212 223221 35689999999
Q ss_pred ccCchHHHHHHHHHhcCCCC-cEEEEe
Q 021218 186 ISDAAQADNYEKIFSCMKPN-SILGLS 211 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~g-aiLid~ 211 (316)
+++++....+-.....+.|+ .++.-+
T Consensus 310 t~dD~~Nl~ivL~ar~l~p~~kIIa~v 336 (393)
T PRK10537 310 RDNDADNAFVVLAAKEMSSDVKTVAAV 336 (393)
T ss_pred CCChHHHHHHHHHHHHhCCCCcEEEEE
Confidence 98877665443333344443 344433
No 362
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=93.53 E-value=0.45 Score=46.72 Aligned_cols=89 Identities=18% Similarity=0.219 Sum_probs=55.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC---------------------cccHHHH---HH
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSFAEA---RA 159 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~---------------------~~s~~~A---~~ 159 (316)
...|+. ++|.|||+|-+|..+|+.|... |. ++.+.++.. .+....+ .+
T Consensus 19 Q~~L~~-~~VlVvG~GglGs~va~~La~a------Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~ 91 (339)
T PRK07688 19 QQKLRE-KHVLIIGAGALGTANAEMLVRA------GVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEE 91 (339)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHH
Confidence 467788 9999999999999999999988 76 555555431 1111111 11
Q ss_pred --CCceec----CCCcCCHHhhhccCCEEEEcccCchHHHHHHHHHh
Q 021218 160 --AGFTEE----NGTLGDIYETISGSDLVLLLISDAAQADNYEKIFS 200 (316)
Q Consensus 160 --~G~~~~----~~t~~~~~e~i~~ADIViLavp~~~~~~vi~ei~~ 200 (316)
..+..+ +-+..+..+.++++|+|+.++-......++++...
T Consensus 92 inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~ 138 (339)
T PRK07688 92 INSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQ 138 (339)
T ss_pred HCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHH
Confidence 111100 10112345788999999999877666667776543
No 363
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=93.45 E-value=0.74 Score=44.67 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=59.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCC-cCCHHhhhccCCEEEEcc
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t-~~~~~e~i~~ADIViLav 186 (316)
+| .++.|+|.|.+|...++.++.. |.+|++......+..+.+++.|.... +.. .....+.....|+|+=++
T Consensus 183 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~ 255 (360)
T PLN02586 183 PG-KHLGVAGLGGLGHVAVKIGKAF------GLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTV 255 (360)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECC
Confidence 68 8999999999999999999998 88876655554444556667776310 000 011223333579999887
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
-.. ..+++..+.++++..++.+
T Consensus 256 g~~---~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 256 SAV---HALGPLLGLLKVNGKLITL 277 (360)
T ss_pred CCH---HHHHHHHHHhcCCcEEEEe
Confidence 632 2344555667777766544
No 364
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=93.43 E-value=0.29 Score=48.01 Aligned_cols=72 Identities=18% Similarity=0.163 Sum_probs=50.9
Q ss_pred cccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccH----HHHHHCCceecCCCcCCHHhh
Q 021218 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYET 175 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G--~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~----~~A~~~G~~~~~~t~~~~~e~ 175 (316)
..++| ++|++||-+ ++..|++..+... |+++.+...+. +... +.+++.|.... ...+++++
T Consensus 151 g~l~g-~kia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea 221 (332)
T PRK04284 151 KPYKD-IKFTYVGDGRNNVANALMQGAAIM------GMDFHLVCPKELNPDDELLNKCKEIAAETGGKIT--ITDDIDEG 221 (332)
T ss_pred CCcCC-cEEEEecCCCcchHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEE--EEcCHHHH
Confidence 35788 999999975 8899999999888 99887765442 1222 22334563211 14689999
Q ss_pred hccCCEEEEcc
Q 021218 176 ISGSDLVLLLI 186 (316)
Q Consensus 176 i~~ADIViLav 186 (316)
+++||+|..-+
T Consensus 222 ~~~aDvvy~~~ 232 (332)
T PRK04284 222 VKGSDVIYTDV 232 (332)
T ss_pred hCCCCEEEECC
Confidence 99999999853
No 365
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.40 E-value=0.64 Score=44.61 Aligned_cols=91 Identities=22% Similarity=0.239 Sum_probs=57.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHh-hhhhhcCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~-~~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
+| .++.|+|.|.+|...++.+++ . | .+|++..+. +...+.+++.+... ...+..+-. ..|+|+=++
T Consensus 163 ~g-~~VlV~G~G~vGl~~~~~a~~~~------g~~~vi~~~~~-~~k~~~a~~~~~~~---~~~~~~~~~-g~d~viD~~ 230 (341)
T cd08237 163 DR-NVIGVWGDGNLGYITALLLKQIY------PESKLVVFGKH-QEKLDLFSFADETY---LIDDIPEDL-AVDHAFECV 230 (341)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHhc------CCCcEEEEeCc-HhHHHHHhhcCcee---ehhhhhhcc-CCcEEEECC
Confidence 57 899999999999998888775 4 4 355554443 44556666655431 011111111 479999888
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
........+++..+.++++..++.+
T Consensus 231 G~~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 231 GGRGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred CCCccHHHHHHHHHhCcCCcEEEEE
Confidence 7432334666667778887766544
No 366
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.40 E-value=0.36 Score=50.94 Aligned_cols=72 Identities=21% Similarity=0.150 Sum_probs=51.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--------------------ccHHHHHHCCceecCCC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~t 168 (316)
.| ++|.|||.|..|.+.|..|++. |++|.+.++... ...+..++.|+...-++
T Consensus 309 ~~-kkVaIIG~GpaGl~aA~~L~~~------G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~ 381 (639)
T PRK12809 309 RS-EKVAVIGAGPAGLGCADILARA------GVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNC 381 (639)
T ss_pred CC-CEEEEECcCHHHHHHHHHHHHc------CCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCC
Confidence 58 9999999999999999999998 998888876542 12345566775421111
Q ss_pred ----cCCHHhhhccCCEEEEccc
Q 021218 169 ----LGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 169 ----~~~~~e~i~~ADIViLavp 187 (316)
..+++++..+.|.|++++-
T Consensus 382 ~v~~~~~~~~l~~~~DaV~latG 404 (639)
T PRK12809 382 EIGRDITFSDLTSEYDAVFIGVG 404 (639)
T ss_pred ccCCcCCHHHHHhcCCEEEEeCC
Confidence 1245566678999999884
No 367
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.38 E-value=1 Score=41.89 Aligned_cols=85 Identities=19% Similarity=0.210 Sum_probs=56.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhhccCCEEEE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~t~~~~~e~i~~ADIViL 184 (316)
-.++| +++-|||.|.+|..=++.|.+. |.+|.+....-.+.+....+.| +....... + .+-+..+++|+.
T Consensus 21 l~~~~-~~VLVVGGG~VA~RK~~~Ll~~------gA~VtVVap~i~~el~~l~~~~~i~~~~r~~-~-~~dl~g~~LVia 91 (223)
T PRK05562 21 LLSNK-IKVLIIGGGKAAFIKGKTFLKK------GCYVYILSKKFSKEFLDLKKYGNLKLIKGNY-D-KEFIKDKHLIVI 91 (223)
T ss_pred EECCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeCCC-C-hHHhCCCcEEEE
Confidence 67789 9999999999999988888888 8877666544333332222333 22211111 2 234689999999
Q ss_pred cccCchHHHHHHHHH
Q 021218 185 LISDAAQADNYEKIF 199 (316)
Q Consensus 185 avp~~~~~~vi~ei~ 199 (316)
|+.+....+-+.+..
T Consensus 92 ATdD~~vN~~I~~~a 106 (223)
T PRK05562 92 ATDDEKLNNKIRKHC 106 (223)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999888776555443
No 368
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=93.38 E-value=0.19 Score=52.21 Aligned_cols=94 Identities=22% Similarity=0.157 Sum_probs=59.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh-hccCCEEEEc
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLL 185 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~-i~~ADIViLa 185 (316)
+++| +++.|+|.|-+|.+++..|.+. |.+|++.+|..++..+.+.+.+.... ...+..+. ...+|+|+-+
T Consensus 376 ~~~~-k~vlIlGaGGagrAia~~L~~~------G~~V~i~nR~~e~a~~la~~l~~~~~--~~~~~~~~~~~~~diiINt 446 (529)
T PLN02520 376 PLAG-KLFVVIGAGGAGKALAYGAKEK------GARVVIANRTYERAKELADAVGGQAL--TLADLENFHPEEGMILANT 446 (529)
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHhCCcee--eHhHhhhhccccCeEEEec
Confidence 4678 9999999999999999999998 88888887765544444444332100 01222222 2357899988
Q ss_pred ccCchHHH----HHHHHHhcCCCCcEEEEe
Q 021218 186 ISDAAQAD----NYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 186 vp~~~~~~----vi~ei~~~mk~gaiLid~ 211 (316)
+|...... -++ ...++++.++.|+
T Consensus 447 T~vGm~~~~~~~pl~--~~~l~~~~~v~D~ 474 (529)
T PLN02520 447 TSVGMQPNVDETPIS--KHALKHYSLVFDA 474 (529)
T ss_pred ccCCCCCCCCCCccc--HhhCCCCCEEEEe
Confidence 88765321 122 1335566677766
No 369
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=93.35 E-value=0.17 Score=48.44 Aligned_cols=76 Identities=21% Similarity=0.126 Sum_probs=52.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHC----Cc--eecCCCcCCHHhhhccC
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA----GF--TEENGTLGDIYETISGS 179 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~----G~--~~~~~t~~~~~e~i~~A 179 (316)
+++| +++.|+|.|-.|.+++..|.+. |. ++.+.+|..++..+.+.+. +. .. .....+..+.+.++
T Consensus 124 ~~~~-k~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 195 (283)
T PRK14027 124 NAKL-DSVVQVGAGGVGNAVAYALVTH------GVQKLQVADLDTSRAQALADVINNAVGREAVV-GVDARGIEDVIAAA 195 (283)
T ss_pred CcCC-CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhccCcceEE-ecCHhHHHHHHhhc
Confidence 5678 9999999999999999999987 86 6778887755555554432 11 10 00001123456789
Q ss_pred CEEEEcccCch
Q 021218 180 DLVLLLISDAA 190 (316)
Q Consensus 180 DIViLavp~~~ 190 (316)
|+||-++|...
T Consensus 196 divINaTp~Gm 206 (283)
T PRK14027 196 DGVVNATPMGM 206 (283)
T ss_pred CEEEEcCCCCC
Confidence 99999999654
No 370
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=93.28 E-value=0.39 Score=46.64 Aligned_cols=70 Identities=14% Similarity=0.083 Sum_probs=50.9
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcc-c-----HHHHHHCCceecCCCcCCHHhhhccC
Q 021218 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-S-----FAEARAAGFTEENGTLGDIYETISGS 179 (316)
Q Consensus 107 ~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~-s-----~~~A~~~G~~~~~~t~~~~~e~i~~A 179 (316)
.++| ++|++||- +++..|++..+... |+++.+...+.-. . .+.+++.|-+. ...+++++++++
T Consensus 150 ~l~g-~~va~vGd~~rv~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~---~~~d~~~av~~a 219 (311)
T PRK14804 150 PLNQ-KQLTYIGVHNNVVNSLIGITAAL------GIHLTLVTPIAAKENIHAQTVERAKKKGTLS---WEMNLHKAVSHA 219 (311)
T ss_pred CCCC-CEEEEECCCCcHHHHHHHHHHHc------CCEEEEECCCCccHHHHHHHHHHHHhcCCeE---EEeCHHHHhCCC
Confidence 5889 99999996 69999999999988 9988777655421 1 12233444221 135899999999
Q ss_pred CEEEEcc
Q 021218 180 DLVLLLI 186 (316)
Q Consensus 180 DIViLav 186 (316)
|+|..-+
T Consensus 220 Dvvy~d~ 226 (311)
T PRK14804 220 DYVYTDT 226 (311)
T ss_pred CEEEeee
Confidence 9999854
No 371
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.28 E-value=0.34 Score=48.50 Aligned_cols=71 Identities=21% Similarity=0.159 Sum_probs=46.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcc-cHHHHHH--CCceecCCCcCCHHhhhccCCEEE
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLGDIYETISGSDLVL 183 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~-s~~~A~~--~G~~~~~~t~~~~~e~i~~ADIVi 183 (316)
++.| ++|.|+|.|..|.+.|+.|.+. |.+|.+.+..... ..+..++ .|+....+ ...++...++|+||
T Consensus 2 ~~~~-~~~~v~G~g~~G~~~a~~l~~~------g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g--~~~~~~~~~~d~vv 72 (445)
T PRK04308 2 TFQN-KKILVAGLGGTGISMIAYLRKN------GAEVAAYDAELKPERVAQIGKMFDGLVFYTG--RLKDALDNGFDILA 72 (445)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCchhHHHHhhccCCcEEEeC--CCCHHHHhCCCEEE
Confidence 3678 9999999999999999999998 9987776654332 1222222 36542111 11234457899998
Q ss_pred Ecc
Q 021218 184 LLI 186 (316)
Q Consensus 184 Lav 186 (316)
...
T Consensus 73 ~sp 75 (445)
T PRK04308 73 LSP 75 (445)
T ss_pred ECC
Confidence 854
No 372
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=93.28 E-value=0.61 Score=44.90 Aligned_cols=90 Identities=16% Similarity=0.263 Sum_probs=66.1
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhcc--CCEEEEcccC
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~--ADIViLavp~ 188 (316)
.+|.|.| .|.+|..+-++++.. |.+++++..++.- ..+-.|+.. +.+..|+-+. .|+.++++|.
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~------g~~~v~~V~p~~~---~~~v~G~~~----y~sv~dlp~~~~~Dlavi~vpa 73 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAY------GTNIVGGVTPGKG---GTTVLGLPV----FDSVKEAVEETGANASVIFVPA 73 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhC------CCCEEEEECCCCC---cceecCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 6788999 899999999999998 8776666655410 112245553 5677777665 6999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEeCCch
Q 021218 189 AAQADNYEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 189 ~~~~~vi~ei~~~mk~gaiLid~aGv~ 215 (316)
....+.+++.... .-..+++.++||.
T Consensus 74 ~~v~~~l~e~~~~-Gvk~avIis~Gf~ 99 (286)
T TIGR01019 74 PFAADAIFEAIDA-GIELIVCITEGIP 99 (286)
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCC
Confidence 9999988886552 2345778899985
No 373
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.27 E-value=0.51 Score=46.99 Aligned_cols=90 Identities=20% Similarity=0.278 Sum_probs=62.9
Q ss_pred cccCCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh
Q 021218 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET 175 (316)
Q Consensus 106 ~~l~G~kkIGIIG~----------G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~ 175 (316)
..++| ++|+|.|+ .+-...+++.|.+. |.+|.+++..-... .....+. ..+.+++
T Consensus 309 ~~~~~-~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~------g~~v~~~DP~~~~~--~~~~~~~------~~~~~~~ 373 (411)
T TIGR03026 309 GPLKG-KTVLILGLAFKPNTDDVRESPALDIIELLKEK------GAKVKAYDPLVPEE--EVKGLPL------IDDLEEA 373 (411)
T ss_pred hcccC-CEEEEEeeEecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCChh--hhhhccc------CCCHHHH
Confidence 35789 99999997 44666778888887 99887776543221 1111211 3478899
Q ss_pred hccCCEEEEcccCchHHH-HHHHHHhcCCCCcEEEEe
Q 021218 176 ISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 176 i~~ADIViLavp~~~~~~-vi~ei~~~mk~gaiLid~ 211 (316)
++++|.|++++.-....+ -++++...|++ .+|+|.
T Consensus 374 ~~~ad~~v~~t~~~~~~~~~~~~~~~~~~~-~~v~D~ 409 (411)
T TIGR03026 374 LKGADALVILTDHDEFKDLDLEKIKDLMKG-KVVVDT 409 (411)
T ss_pred HhCCCEEEEecCCHHHhccCHHHHHHhcCC-CEEEeC
Confidence 999999999999888766 35566666754 467774
No 374
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=93.25 E-value=0.33 Score=47.78 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=50.3
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccH----HHHHHCCceecCCCcCCHHhhh
Q 021218 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETI 176 (316)
Q Consensus 107 ~l~G~kkIGIIG~G--~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~----~~A~~~G~~~~~~t~~~~~e~i 176 (316)
.++| .+|++||-+ ++..|++..+... |+++.+...+. +... +.+++.|.... ...++++++
T Consensus 153 ~l~g-l~va~vGD~~~~v~~S~~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 223 (334)
T PRK12562 153 AFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEASLVAECSALAQKHGGKIT--LTEDIAAGV 223 (334)
T ss_pred CcCC-cEEEEECCCCCCHHHHHHHHHHHc------CCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4788 999999976 7899999999888 99887765443 1112 22344453211 146899999
Q ss_pred ccCCEEEEcc
Q 021218 177 SGSDLVLLLI 186 (316)
Q Consensus 177 ~~ADIViLav 186 (316)
+++|+|..-.
T Consensus 224 ~~aDvvyt~~ 233 (334)
T PRK12562 224 KGADFIYTDV 233 (334)
T ss_pred CCCCEEEEcC
Confidence 9999999865
No 375
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=93.21 E-value=0.47 Score=38.62 Aligned_cols=84 Identities=24% Similarity=0.259 Sum_probs=48.5
Q ss_pred cccchHHHHHHHHHhhhhhhcCCcEEEE-EecC--CcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccCchHH
Q 021218 118 GWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRK--GSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDAAQA 192 (316)
Q Consensus 118 G~G~mG~AlA~~Lr~~~~~~g~G~~Viv-g~r~--~~~s~~~A~~~G~~~~~~t~~~~~e~i~--~ADIViLavp~~~~~ 192 (316)
|+|++|.++++.|.+.-.. .++++.. ..++ -.... .....+... ..++++++. +.|+||=|++.+...
T Consensus 1 G~G~VG~~l~~~l~~~~~~--~~~~v~~v~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~dvvVE~t~~~~~~ 73 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER--IDLEVVGVADRSMLISKDW-AASFPDEAF----TTDLEELIDDPDIDVVVECTSSEAVA 73 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH--CEEEEEEEEESSEEEETTH-HHHHTHSCE----ESSHHHHHTHTT-SEEEE-SSCHHHH
T ss_pred CCCHHHHHHHHHHHhCccc--CCEEEEEEEECCchhhhhh-hhhcccccc----cCCHHHHhcCcCCCEEEECCCchHHH
Confidence 8999999999999886111 2344433 3333 01112 111122221 458888888 999999999988877
Q ss_pred HHHHHHHhcCCCCcEEEEe
Q 021218 193 DNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 193 ~vi~ei~~~mk~gaiLid~ 211 (316)
+.+.+.+. .|.-|+.+
T Consensus 74 ~~~~~~L~---~G~~VVt~ 89 (117)
T PF03447_consen 74 EYYEKALE---RGKHVVTA 89 (117)
T ss_dssp HHHHHHHH---TTCEEEES
T ss_pred HHHHHHHH---CCCeEEEE
Confidence 77776544 46655533
No 376
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=93.17 E-value=0.63 Score=44.52 Aligned_cols=90 Identities=18% Similarity=0.201 Sum_probs=61.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~ 188 (316)
+| .++.|+|.|.+|...++.++.. |.+|++..+. ++..+.+++.|.... ....++.-+..|+++.+...
T Consensus 165 ~g-~~VlV~G~g~iG~~a~~~a~~~------G~~vi~~~~~-~~~~~~a~~~Ga~~v---i~~~~~~~~~~d~~i~~~~~ 233 (329)
T TIGR02822 165 PG-GRLGLYGFGGSAHLTAQVALAQ------GATVHVMTRG-AAARRLALALGAASA---GGAYDTPPEPLDAAILFAPA 233 (329)
T ss_pred CC-CEEEEEcCCHHHHHHHHHHHHC------CCeEEEEeCC-hHHHHHHHHhCCcee---ccccccCcccceEEEECCCc
Confidence 57 8999999999999999988888 8876655544 455788999987421 11111112347888877665
Q ss_pred chHHHHHHHHHhcCCCCcEEEEeC
Q 021218 189 AAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 189 ~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
. ..+.+.++.++++-.++..+
T Consensus 234 ~---~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 234 G---GLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred H---HHHHHHHHhhCCCcEEEEEe
Confidence 3 35666677788887766443
No 377
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=93.08 E-value=0.22 Score=49.32 Aligned_cols=84 Identities=14% Similarity=0.036 Sum_probs=50.7
Q ss_pred CEEEEEcccchHHHH-HHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCc----eecCC-C---------c--CCHHh
Q 021218 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF----TEENG-T---------L--GDIYE 174 (316)
Q Consensus 112 kkIGIIG~G~mG~Al-A~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~----~~~~~-t---------~--~~~~e 174 (316)
|||.++|.|+||.+. ...|.+. |++|++.+.. +...+.-.+.|. ...+. . . .+.++
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~------g~~V~~vd~~-~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~ 73 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN------GFEVTFVDVN-QELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEA 73 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC------CCeEEEEECC-HHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHH
Confidence 689999999999876 6666666 7877666543 333444444452 11111 0 1 02122
Q ss_pred ---hhccCCEEEEcccCchHHHHHHHHHhcC
Q 021218 175 ---TISGSDLVLLLISDAAQADNYEKIFSCM 202 (316)
Q Consensus 175 ---~i~~ADIViLavp~~~~~~vi~ei~~~m 202 (316)
.+.++|+|+++++++....+...+.+.|
T Consensus 74 ~~~~~~~~dlvt~~v~~~~~~s~~~~l~~~L 104 (381)
T PRK02318 74 VIEAIAEADLVTTAVGPNILPFIAPLIAKGL 104 (381)
T ss_pred HHHHhcCCCEEEeCCCcccchhHHHHHHHHH
Confidence 4458899999999887655555544433
No 378
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=93.07 E-value=0.39 Score=44.81 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=25.9
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~ 133 (316)
.+.|++ .+|.|||+|-+|..+|+.|...
T Consensus 19 q~~L~~-~~VlvvG~GglGs~va~~La~~ 46 (240)
T TIGR02355 19 QEALKA-SRVLIVGLGGLGCAASQYLAAA 46 (240)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc
Confidence 467888 9999999999999999999988
No 379
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=93.04 E-value=0.29 Score=48.36 Aligned_cols=89 Identities=12% Similarity=0.143 Sum_probs=54.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHh-hhhhhcCCcE---EEEEecCC--cccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRD-SLAEAKSDIV---VKVGLRKG--SRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~-~~~~~g~G~~---Vivg~r~~--~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViL 184 (316)
++||||| .|..|+.+.+.|.+ . .++ +.+..... .+......+ ....+ ..+.+ .+++.|++++
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~------~f~v~~l~~~aS~~saGk~~~~~~~-~l~v~---~~~~~-~~~~~Divf~ 74 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKET------KFNIAEVTLLSSKRSAGKTVQFKGR-EIIIQ---EAKIN-SFEGVDIAFF 74 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCC------CCCcccEEEEECcccCCCCeeeCCc-ceEEE---eCCHH-HhcCCCEEEE
Confidence 6899999 59999999999884 4 443 33222221 111111100 11110 11333 3588999999
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeCCc
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~aGv 214 (316)
++|.....++..+.. +.|..|+|.++.
T Consensus 75 a~~~~~s~~~~~~~~---~~G~~VID~Ss~ 101 (347)
T PRK06728 75 SAGGEVSRQFVNQAV---SSGAIVIDNTSE 101 (347)
T ss_pred CCChHHHHHHHHHHH---HCCCEEEECchh
Confidence 999887777777653 358889988763
No 380
>PRK09414 glutamate dehydrogenase; Provisional
Probab=93.04 E-value=0.28 Score=50.03 Aligned_cols=87 Identities=14% Similarity=0.158 Sum_probs=52.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEec----------CCcccH-HHHHHC-C----ceec-CCC
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR----------KGSRSF-AEARAA-G----FTEE-NGT 168 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r----------~~~~s~-~~A~~~-G----~~~~-~~t 168 (316)
.+|+| ++|+|.|+|++|...|+.|.+. |.+|+...+ -+...+ +...+. | +... ...
T Consensus 228 ~~l~g-~rVaIqGfGnVG~~~A~~L~~~------GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~ 300 (445)
T PRK09414 228 DSFEG-KRVVVSGSGNVAIYAIEKAQQL------GAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAE 300 (445)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCe
Confidence 57899 9999999999999999999988 988765534 111111 111111 1 1100 000
Q ss_pred cCCHHhhh-ccCCEEEEcccCchHHH-HHHHHH
Q 021218 169 LGDIYETI-SGSDLVLLLISDAAQAD-NYEKIF 199 (316)
Q Consensus 169 ~~~~~e~i-~~ADIViLavp~~~~~~-vi~ei~ 199 (316)
..+.++++ .+|||++-|...+.+.. ....+.
T Consensus 301 ~i~~~~i~~~d~DVliPaAl~n~It~~~a~~i~ 333 (445)
T PRK09414 301 YLEGGSPWSVPCDIALPCATQNELDEEDAKTLI 333 (445)
T ss_pred ecCCccccccCCcEEEecCCcCcCCHHHHHHHH
Confidence 11333333 37999999998777654 555554
No 381
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=93.02 E-value=0.69 Score=45.30 Aligned_cols=90 Identities=11% Similarity=0.189 Sum_probs=67.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhhhcc--CCEEEEcc
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~--~s~~~A~~~G~~~~~~t~~~~~e~i~~--ADIViLav 186 (316)
.++-|-| .|..|.-.++..++. |-+|+.|..++. .... ..|+.. +.+..|+.+. .|+.++.+
T Consensus 30 t~v~vqGitg~~g~~h~~~~~~y------gt~iv~GV~Pgkgg~~v~---~~Gvpv----y~sv~ea~~~~~~D~avI~V 96 (317)
T PTZ00187 30 TKVICQGITGKQGTFHTEQAIEY------GTKMVGGVNPKKAGTTHL---KHGLPV----FATVKEAKKATGADASVIYV 96 (317)
T ss_pred CeEEEecCCChHHHHHHHHHHHh------CCcEEEEECCCCCCceEe---cCCccc----cCCHHHHhcccCCCEEEEec
Confidence 6888999 699999999999999 988888887654 2211 125553 5688888887 99999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeCCch
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~aGv~ 215 (316)
|+....+.+.|..+. .-..+++++.||.
T Consensus 97 Pa~~v~dai~Ea~~a-GI~~~ViiteGfp 124 (317)
T PTZ00187 97 PPPHAASAIIEAIEA-EIPLVVCITEGIP 124 (317)
T ss_pred CHHHHHHHHHHHHHc-CCCEEEEECCCCc
Confidence 999999877765442 1234677888886
No 382
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=92.93 E-value=0.59 Score=44.99 Aligned_cols=67 Identities=21% Similarity=0.224 Sum_probs=40.3
Q ss_pred EEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecCCcccHHHHHHCC----ceecC-CCcCCHHhhhccCCEEEEcccC
Q 021218 116 VIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG----FTEEN-GTLGDIYETISGSDLVLLLISD 188 (316)
Q Consensus 116 IIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~~~~s~~~A~~~G----~~~~~-~t~~~~~e~i~~ADIViLavp~ 188 (316)
|||.|.+|.++|..|... ++ ++.+.+...+.....+.+.. +...+ ....+..+.+++||+||++.-.
T Consensus 1 iIGaG~VG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~ 74 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQ------GIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGA 74 (299)
T ss_pred CCCcCHHHHHHHHHHHhc------CCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCC
Confidence 799999999999999876 65 56556554432222222211 00000 0012345789999999997643
No 383
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=92.76 E-value=0.4 Score=47.06 Aligned_cols=71 Identities=17% Similarity=0.106 Sum_probs=50.1
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCCc----ccH----HHHHHCCceecCCCcCCHHhhh
Q 021218 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSF----AEARAAGFTEENGTLGDIYETI 176 (316)
Q Consensus 107 ~l~G~kkIGIIG~G--~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~----~s~----~~A~~~G~~~~~~t~~~~~e~i 176 (316)
.|+| .+|++||-+ ++..|++..+... |+++.+...+.- ... +.+++.|...+ ...++++++
T Consensus 153 ~l~g-l~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 223 (334)
T PRK01713 153 PLSE-ISYVYIGDARNNMGNSLLLIGAKL------GMDVRICAPKALLPEASLVEMCEKFAKESGARIT--VTDDIDKAV 223 (334)
T ss_pred CcCC-cEEEEECCCccCHHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 5889 999999986 6888999988888 998877654421 111 22344563211 146899999
Q ss_pred ccCCEEEEcc
Q 021218 177 SGSDLVLLLI 186 (316)
Q Consensus 177 ~~ADIViLav 186 (316)
++||+|..-+
T Consensus 224 ~~aDvVyt~~ 233 (334)
T PRK01713 224 KGVDFVHTDV 233 (334)
T ss_pred CCCCEEEEcc
Confidence 9999999743
No 384
>PRK10637 cysG siroheme synthase; Provisional
Probab=92.71 E-value=0.64 Score=47.27 Aligned_cols=85 Identities=16% Similarity=0.140 Sum_probs=56.9
Q ss_pred ccccccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhhccC
Q 021218 101 FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGS 179 (316)
Q Consensus 101 F~~~~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~t~~~~~e~i~~A 179 (316)
|+++ -+|+| +++.|||.|.+|..=++.|.+. |.+|.+....-........+.| +....... ..+.++++
T Consensus 4 ~P~~-~~l~~-~~vlvvGgG~vA~rk~~~ll~~------ga~v~visp~~~~~~~~l~~~~~i~~~~~~~--~~~dl~~~ 73 (457)
T PRK10637 4 LPIF-CQLRD-RDCLLVGGGDVAERKARLLLDA------GARLTVNALAFIPQFTAWADAGMLTLVEGPF--DESLLDTC 73 (457)
T ss_pred eceE-EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeCCC--ChHHhCCC
Confidence 4544 69999 9999999999999988999888 8777665433222232233333 22111121 23457899
Q ss_pred CEEEEcccCchHHHHH
Q 021218 180 DLVLLLISDAAQADNY 195 (316)
Q Consensus 180 DIViLavp~~~~~~vi 195 (316)
++|+.|+.+....+-+
T Consensus 74 ~lv~~at~d~~~n~~i 89 (457)
T PRK10637 74 WLAIAATDDDAVNQRV 89 (457)
T ss_pred EEEEECCCCHHHhHHH
Confidence 9999999998876633
No 385
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=92.54 E-value=0.64 Score=42.54 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=26.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~ 133 (316)
...|+. .+|.|||+|-+|..+|+.|...
T Consensus 23 q~~L~~-~~V~ViG~GglGs~ia~~La~~ 50 (212)
T PRK08644 23 LEKLKK-AKVGIAGAGGLGSNIAVALARS 50 (212)
T ss_pred HHHHhC-CCEEEECcCHHHHHHHHHHHHc
Confidence 577888 9999999999999999999988
No 386
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.52 E-value=0.63 Score=41.17 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=24.4
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEec
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r 148 (316)
+|.|||+|.+|..+++.|... |. ++.+.++
T Consensus 1 ~VlViG~GglGs~ia~~La~~------Gvg~i~lvD~ 31 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS------GVGNLKLVDF 31 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCCeEEEEeC
Confidence 589999999999999999888 66 3555544
No 387
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.42 E-value=0.5 Score=47.10 Aligned_cols=71 Identities=14% Similarity=0.157 Sum_probs=45.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
++.+ ++|.|||.|-.|.+.++.|++. |.+|...+...........+.|+....+ ....+.+++.|+||..-
T Consensus 3 ~~~~-~~i~v~G~G~sG~s~~~~l~~~------G~~v~~~D~~~~~~~~~~l~~g~~~~~~--~~~~~~~~~~d~vv~sp 73 (438)
T PRK03806 3 DYQG-KKVVIIGLGLTGLSCVDFFLAR------GVTPRVIDTRITPPGLDKLPENVERHTG--SLNDEWLLAADLIVASP 73 (438)
T ss_pred ccCC-CEEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCCCchhHHHHhcCCEEEeC--CCCHHHhcCCCEEEECC
Confidence 4567 8999999999999999998888 9987666544322111122336543111 12234567889776643
No 388
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.41 E-value=0.47 Score=46.76 Aligned_cols=28 Identities=21% Similarity=0.346 Sum_probs=25.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~ 133 (316)
.+.|+. .+|.|||+|-+|..++++|...
T Consensus 23 q~~L~~-~~VlivG~GGlGs~~a~~La~~ 50 (355)
T PRK05597 23 QQSLFD-AKVAVIGAGGLGSPALLYLAGA 50 (355)
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHHc
Confidence 467888 9999999999999999999888
No 389
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=92.41 E-value=0.49 Score=46.47 Aligned_cols=72 Identities=15% Similarity=0.185 Sum_probs=51.0
Q ss_pred cccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCCc----ccH----HHHHHCCceecCCCcCCHHhh
Q 021218 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSF----AEARAAGFTEENGTLGDIYET 175 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G--~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~----~s~----~~A~~~G~~~~~~t~~~~~e~ 175 (316)
..++| .||++||-+ ++..|++..+... |++|.+...+.- ... +.+++.|...+ ...+++++
T Consensus 151 g~l~g-~~va~vGd~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea 221 (331)
T PRK02102 151 GPLKG-LKLAYVGDGRNNMANSLMVGGAKL------GMDVRICAPKELWPEEELVALAREIAKETGAKIT--ITEDPEEA 221 (331)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHHHHHcCCeEE--EEcCHHHH
Confidence 46889 999999987 8899999998888 998777654421 111 12334563211 14688999
Q ss_pred hccCCEEEEcc
Q 021218 176 ISGSDLVLLLI 186 (316)
Q Consensus 176 i~~ADIViLav 186 (316)
+++||+|..-+
T Consensus 222 ~~~aDvvyt~~ 232 (331)
T PRK02102 222 VKGADVIYTDV 232 (331)
T ss_pred hCCCCEEEEcC
Confidence 99999999854
No 390
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=92.26 E-value=0.61 Score=45.91 Aligned_cols=71 Identities=20% Similarity=0.202 Sum_probs=50.7
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhhhhhhcCCcEEEEEecCCc----ccH----HHHHHCCceecCCCcCCHHhhh
Q 021218 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSF----AEARAAGFTEENGTLGDIYETI 176 (316)
Q Consensus 107 ~l~G~kkIGIIG~G--~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~----~s~----~~A~~~G~~~~~~t~~~~~e~i 176 (316)
.++| .+|++||-+ ++..|++..+... |+++.+...+.- ... +.+++.|...+ ...++++++
T Consensus 153 ~l~g-~~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~--~~~d~~ea~ 223 (336)
T PRK03515 153 AFNE-MTLAYAGDARNNMGNSLLEAAALT------GLDLRLVAPKACWPEAALVTECRALAQKNGGNIT--LTEDIAEGV 223 (336)
T ss_pred CcCC-CEEEEeCCCcCcHHHHHHHHHHHc------CCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 5789 999999976 7899999999888 998777654431 111 23444563211 146899999
Q ss_pred ccCCEEEEcc
Q 021218 177 SGSDLVLLLI 186 (316)
Q Consensus 177 ~~ADIViLav 186 (316)
+++|+|..-+
T Consensus 224 ~~aDvvytd~ 233 (336)
T PRK03515 224 KGADFIYTDV 233 (336)
T ss_pred CCCCEEEecC
Confidence 9999998863
No 391
>CHL00194 ycf39 Ycf39; Provisional
Probab=92.22 E-value=0.31 Score=46.22 Aligned_cols=69 Identities=17% Similarity=0.178 Sum_probs=46.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCc---CCHHhhhccCCEEEEccc
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL---GDIYETISGSDLVLLLIS 187 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~---~~~~e~i~~ADIViLavp 187 (316)
|+|.|+| .|.+|..+++.|.+. |++|....|+.++. ......|+....+.. .++.++++++|+|+-+..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~------g~~V~~l~R~~~~~-~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE------GYQVRCLVRNLRKA-SFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCeEEEEEcChHHh-hhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 5899999 699999999999998 99988777764322 111223432111112 235677899999998754
No 392
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=92.19 E-value=0.43 Score=45.47 Aligned_cols=86 Identities=15% Similarity=0.081 Sum_probs=57.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCch
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~ 190 (316)
+++.|+|.|-.+.|++..|.+. |. +|.+.+|..++..+.+...+.. ..+ +.....+|+||-++|...
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~~a~~la~~~~~~-----~~~-~~~~~~~dlvINaTp~Gm 190 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDA------GFTDGTIVARNEKTGKALAELYGYE-----WRP-DLGGIEADILVNVTPIGM 190 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHhCCc-----chh-hcccccCCEEEECCcccc
Confidence 6899999999999999999988 86 5888888866655566554432 111 001256899999999654
Q ss_pred HHH------HHHHHHhcCCCCcEEEEe
Q 021218 191 QAD------NYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 191 ~~~------vi~ei~~~mk~gaiLid~ 211 (316)
... -++ ...++++.++.|+
T Consensus 191 ~~~~~~~~~pi~--~~~l~~~~~v~D~ 215 (272)
T PRK12550 191 AGGPEADKLAFP--EAEIDAASVVFDV 215 (272)
T ss_pred CCCCccccCCCC--HHHcCCCCEEEEe
Confidence 311 111 1335667777766
No 393
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.17 E-value=0.78 Score=45.32 Aligned_cols=88 Identities=11% Similarity=0.101 Sum_probs=53.6
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC-------------------CcccHHHHHHC----
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK-------------------GSRSFAEARAA---- 160 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~-------------------~~~s~~~A~~~---- 160 (316)
...|++ ++|.|||+|-+|..+++.|... |. ++.+.++. ..+....+++.
T Consensus 130 q~~l~~-~~VlvvG~GG~Gs~ia~~La~~------Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 202 (376)
T PRK08762 130 QRRLLE-ARVLLIGAGGLGSPAALYLAAA------GVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN 202 (376)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC
Confidence 357888 9999999999999999999988 76 45555443 11111111111
Q ss_pred -Cceec--CCCc--CCHHhhhccCCEEEEcccCchHHHHHHHHH
Q 021218 161 -GFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (316)
Q Consensus 161 -G~~~~--~~t~--~~~~e~i~~ADIViLavp~~~~~~vi~ei~ 199 (316)
.+..+ .... .+..+.++++|+||.|+-.......+++..
T Consensus 203 p~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~ 246 (376)
T PRK08762 203 PDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDAC 246 (376)
T ss_pred CCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 11110 0011 123457889999999887655544666544
No 394
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=92.16 E-value=0.59 Score=46.46 Aligned_cols=88 Identities=17% Similarity=0.153 Sum_probs=54.6
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-------------------cccHH---HHHH--
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFA---EARA-- 159 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~-------------------~~s~~---~A~~-- 159 (316)
...|+. .+|.|||+|-+|..+++.|... |. ++.+.++.. .+... ...+
T Consensus 36 q~~l~~-~~VliiG~GglG~~v~~~La~~------Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n 108 (370)
T PRK05600 36 QERLHN-ARVLVIGAGGLGCPAMQSLASA------GVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ 108 (370)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC
Confidence 577888 9999999999999999999988 75 444444320 00000 0111
Q ss_pred CCce--ecCCCc--CCHHhhhccCCEEEEcccCchHHHHHHHHH
Q 021218 160 AGFT--EENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (316)
Q Consensus 160 ~G~~--~~~~t~--~~~~e~i~~ADIViLavp~~~~~~vi~ei~ 199 (316)
..+. ...... .+..+.++++|+|+-|+-......+++++.
T Consensus 109 p~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~ 152 (370)
T PRK05600 109 PDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAA 152 (370)
T ss_pred CCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 1111 000111 234568899999988887766666777654
No 395
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=92.14 E-value=0.75 Score=46.19 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=20.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHhh
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDS 133 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~ 133 (316)
-||+|||. |.+|.++|..|...
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~ 67 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASG 67 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc
Confidence 58999999 99999999998776
No 396
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=92.12 E-value=0.28 Score=48.03 Aligned_cols=87 Identities=15% Similarity=0.199 Sum_probs=53.9
Q ss_pred EEEEEc-ccchHHHHHHHHHhhhhhhcCCcE---EEEEecCCcccHHHHHHCC--ceecCCCcCCHHhhhccCCEEEEcc
Q 021218 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV---VKVGLRKGSRSFAEARAAG--FTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 113 kIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~---Vivg~r~~~~s~~~A~~~G--~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
+|+||| .|..|..+.+.|.+. ++. +.+..+..+...... ..| ....+ .+. +.++++|+|++|+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~------~hp~~~l~~~as~~~~g~~~~-~~~~~~~~~~---~~~-~~~~~~D~v~~a~ 69 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEER------NFPIDKLVLLASDRSAGRKVT-FKGKELEVNE---AKI-ESFEGIDIALFSA 69 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhC------CCChhhEEEEeccccCCCeee-eCCeeEEEEe---CCh-HHhcCCCEEEECC
Confidence 589999 899999999998875 542 222223221111111 112 11100 122 3458999999999
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeCC
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~aG 213 (316)
|.....++..++.+ .|..|+|.++
T Consensus 70 g~~~s~~~a~~~~~---~G~~VID~ss 93 (339)
T TIGR01296 70 GGSVSKEFAPKAAK---CGAIVIDNTS 93 (339)
T ss_pred CHHHHHHHHHHHHH---CCCEEEECCH
Confidence 99877777776543 5778888775
No 397
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=92.12 E-value=0.54 Score=45.76 Aligned_cols=86 Identities=20% Similarity=0.293 Sum_probs=58.1
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHHHH----HHCC--ceecCCCcCCHHhhh
Q 021218 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEA----RAAG--FTEENGTLGDIYETI 176 (316)
Q Consensus 108 l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~~A----~~~G--~~~~~~t~~~~~e~i 176 (316)
|+| +|++.||-| ||+.|+..+.... |+++.+...++ ++-.+.| .+.| +.. +.|+++++
T Consensus 151 l~g-~k~a~vGDgNNv~nSl~~~~a~~------G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~----t~d~~eAv 219 (310)
T COG0078 151 LKG-LKLAYVGDGNNVANSLLLAAAKL------GMDVRIATPKGYEPDPEVVEKAKENAKESGGKITL----TEDPEEAV 219 (310)
T ss_pred ccC-cEEEEEcCcchHHHHHHHHHHHh------CCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEE----ecCHHHHh
Confidence 788 999999966 8999998888888 99988876543 2223333 3344 332 46899999
Q ss_pred ccCCEEEEcccCchH--HHHHHHHHhcCCC
Q 021218 177 SGSDLVLLLISDAAQ--ADNYEKIFSCMKP 204 (316)
Q Consensus 177 ~~ADIViLavp~~~~--~~vi~ei~~~mk~ 204 (316)
++||+|.-=+....= .+..++....+++
T Consensus 220 ~gADvvyTDvWvSMGee~e~~~~~~~~~~~ 249 (310)
T COG0078 220 KGADVVYTDVWVSMGEEAEAEERRIAFLPP 249 (310)
T ss_pred CCCCEEEecCcccCcchhhhHHHHHhhCCC
Confidence 999999877655442 2233444444443
No 398
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.10 E-value=0.45 Score=51.61 Aligned_cols=65 Identities=22% Similarity=0.175 Sum_probs=46.3
Q ss_pred CEEEEEcccchHHHH-HHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 112 kkIGIIG~G~mG~Al-A~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
++|.|||.|-.|.+. |+.|++. |++|.+.+.+.....+..++.|+... .....+.+.++|+||+.
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~------G~~V~~sD~~~~~~~~~L~~~gi~~~---~g~~~~~~~~~d~vV~S 70 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDR------GYSVSGSDLSEGKTVEKLKAKGARFF---LGHQEEHVPEDAVVVYS 70 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHcCCCCEEEEC
Confidence 569999999999997 9999999 99987766544333334455676542 12233567789998875
No 399
>PRK08223 hypothetical protein; Validated
Probab=92.06 E-value=0.98 Score=43.62 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=26.2
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~ 133 (316)
.+-|+. .+|.|||+|-+|..+++.|...
T Consensus 22 Q~kL~~-s~VlIvG~GGLGs~va~~LA~a 49 (287)
T PRK08223 22 QQRLRN-SRVAIAGLGGVGGIHLLTLARL 49 (287)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHh
Confidence 677888 9999999999999999999988
No 400
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=91.98 E-value=0.75 Score=46.68 Aligned_cols=73 Identities=25% Similarity=0.238 Sum_probs=51.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--------------------ccHHHHHHCCceecCCC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~t 168 (316)
.| ++|.|||.|..|.+.|..|+.. |++|.+.++... ...+..++.|+...-++
T Consensus 140 ~~-~~V~IIG~GpaGl~aA~~l~~~------G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~ 212 (467)
T TIGR01318 140 TG-KRVAVIGAGPAGLACADILARA------GVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNC 212 (467)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCC
Confidence 68 9999999999999999999998 988877765431 12455677786532111
Q ss_pred -c---CCHHhhhccCCEEEEcccC
Q 021218 169 -L---GDIYETISGSDLVLLLISD 188 (316)
Q Consensus 169 -~---~~~~e~i~~ADIViLavp~ 188 (316)
. ...++...+.|.||+++--
T Consensus 213 ~v~~~~~~~~~~~~~D~vilAtGa 236 (467)
T TIGR01318 213 EVGRDISLDDLLEDYDAVFLGVGT 236 (467)
T ss_pred EeCCccCHHHHHhcCCEEEEEeCC
Confidence 1 1334455679999998853
No 401
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=91.84 E-value=1.8 Score=42.92 Aligned_cols=98 Identities=16% Similarity=0.160 Sum_probs=65.1
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCc-CCHHh----hh--ccCC
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYE----TI--SGSD 180 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~-~~~~e----~i--~~AD 180 (316)
-.| .++.|.|.|.+|...++.++.. |.++++..+.+++..+.+++.|...-+... .+..+ .. ...|
T Consensus 184 ~~g-~~VlV~G~G~iG~~aiqlAk~~------Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~D 256 (393)
T TIGR02819 184 GPG-STVYIAGAGPVGLAAAASAQLL------GAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVD 256 (393)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCc
Confidence 357 8999999999999999999988 887666555556677888888873211110 12222 22 2479
Q ss_pred EEEEcccCchH-----------HHHHHHHHhcCCCCcEEEEeC
Q 021218 181 LVLLLISDAAQ-----------ADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 181 IViLavp~~~~-----------~~vi~ei~~~mk~gaiLid~a 212 (316)
+++-++-.... ...+++..+.++++-.++.++
T Consensus 257 vvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 257 CAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred EEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 99988875421 235666667777777666443
No 402
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=91.83 E-value=0.66 Score=44.99 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=48.2
Q ss_pred cccCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEE
Q 021218 106 DAFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (316)
Q Consensus 106 ~~l~G~kkIGIIG~---G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIV 182 (316)
..++| +||++||- +++..|++..+... |+++.+...++-.... . ..+. ...+++|++++||+|
T Consensus 152 G~l~g-~kv~~vGD~~~~~v~~Sl~~~~~~~------g~~~~~~~P~~~~~~~--~-~~~~----~~~d~~ea~~~aDvv 217 (305)
T PRK00856 152 GRLEG-LKVAIVGDIKHSRVARSNIQALTRL------GAEVRLIAPPTLLPEG--M-PEYG----VHTDLDEVIEDADVV 217 (305)
T ss_pred CCCCC-CEEEEECCCCCCcHHHHHHHHHHHc------CCEEEEECCcccCccc--c-cceE----EECCHHHHhCCCCEE
Confidence 45888 99999997 58999999999998 9987776554321000 0 0112 246899999999998
Q ss_pred EEcc
Q 021218 183 LLLI 186 (316)
Q Consensus 183 iLav 186 (316)
..-.
T Consensus 218 yt~~ 221 (305)
T PRK00856 218 MMLR 221 (305)
T ss_pred EECC
Confidence 7744
No 403
>PLN02477 glutamate dehydrogenase
Probab=91.77 E-value=0.34 Score=48.98 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=29.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vi 144 (316)
.+|+| ++|+|.|+|++|...|+.|.+. |.+|+
T Consensus 202 ~~l~g-~~VaIqGfGnVG~~~A~~L~e~------GakVV 233 (410)
T PLN02477 202 KSIAG-QTFVIQGFGNVGSWAAQLIHEK------GGKIV 233 (410)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHc------CCEEE
Confidence 47999 9999999999999999999998 98876
No 404
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=91.75 E-value=0.43 Score=46.51 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=19.8
Q ss_pred EEEEEcccchHHHHHHHHHhh
Q 021218 113 QIGVIGWGSQGPAQAQNLRDS 133 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~ 133 (316)
||.|||.|-+|..+|++|...
T Consensus 1 kVLIvGaGGLGs~vA~~La~a 21 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW 21 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc
Confidence 588999999999999999988
No 405
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=91.72 E-value=1.2 Score=45.41 Aligned_cols=75 Identities=17% Similarity=0.065 Sum_probs=41.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHhhhhhhcC--Cc--EEEEEecCCcccHHHHHH--CCc---eecCCCcCCHHhhhccCCE
Q 021218 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKS--DI--VVKVGLRKGSRSFAEARA--AGF---TEENGTLGDIYETISGSDL 181 (316)
Q Consensus 112 kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~--G~--~Vivg~r~~~~s~~~A~~--~G~---~~~~~t~~~~~e~i~~ADI 181 (316)
-||+|||. |++|.++|..|... .=.|. ++ ++++.+.+.+.....+.+ ++. ..+-....+..+.+++||+
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~-~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDi 179 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASG-EVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEW 179 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc-ccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCE
Confidence 58999999 99999999987643 00000 11 454444443332222221 111 0000001245678999999
Q ss_pred EEEccc
Q 021218 182 VLLLIS 187 (316)
Q Consensus 182 ViLavp 187 (316)
||+..-
T Consensus 180 VVitAG 185 (444)
T PLN00112 180 ALLIGA 185 (444)
T ss_pred EEECCC
Confidence 999864
No 406
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.70 E-value=0.57 Score=46.92 Aligned_cols=67 Identities=15% Similarity=0.111 Sum_probs=43.9
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcc-cHHHHHH--CCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~-s~~~A~~--~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
-+|.|||.|-.|.++|+.|++. |++|.+.+..... ..+..++ .|+....+ ....+.+.++|+||..-
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~--~~~~~~~~~~d~vV~sp 76 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQ------GIPFAVMDSREQPPGLDTLAREFPDVELRCG--GFDCELLVQASEIIISP 76 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhC------CCeEEEEeCCCCchhHHHHHhhcCCcEEEeC--CCChHHhcCCCEEEECC
Confidence 4789999999999999999999 9988776654322 2222222 36543111 12245567899887753
No 407
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=91.59 E-value=0.43 Score=49.42 Aligned_cols=76 Identities=18% Similarity=0.181 Sum_probs=51.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC--------------------cccHHHHHHCCceec-
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--------------------SRSFAEARAAGFTEE- 165 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~--------------------~~s~~~A~~~G~~~~- 165 (316)
.-.| ++|.|||.|.+|-+.|..|++. |++|++.++.. ....+.+++.|+...
T Consensus 134 ~~~g-~~V~VIGaGpaGL~aA~~l~~~------G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 134 PDTG-KRVAVIGGGPAGLSAAYHLRRM------GHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 4468 9999999999999999999998 98887776421 123456777886421
Q ss_pred CCCc-C--CHHhhhccCCEEEEcccCc
Q 021218 166 NGTL-G--DIYETISGSDLVLLLISDA 189 (316)
Q Consensus 166 ~~t~-~--~~~e~i~~ADIViLavp~~ 189 (316)
+... . +.++.-...|.||+++-..
T Consensus 207 ~~~~~~~~~~~~~~~~~D~Vi~AtG~~ 233 (564)
T PRK12771 207 GVRVGEDITLEQLEGEFDAVFVAIGAQ 233 (564)
T ss_pred CCEECCcCCHHHHHhhCCEEEEeeCCC
Confidence 1111 1 2333445689999998543
No 408
>PLN02342 ornithine carbamoyltransferase
Probab=91.59 E-value=0.72 Score=45.68 Aligned_cols=71 Identities=23% Similarity=0.265 Sum_probs=51.0
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHHHHHHCCc--eecCCCcCCHHhhhcc
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGF--TEENGTLGDIYETISG 178 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~~A~~~G~--~~~~~t~~~~~e~i~~ 178 (316)
..|+| .||++||-+ ++..|++..+... |+++.+...+. ....+.+++.|. .. ...++++++++
T Consensus 190 G~l~g-lkva~vGD~~nva~Sli~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~---~~~d~~eav~~ 259 (348)
T PLN02342 190 GRLEG-TKVVYVGDGNNIVHSWLLLAAVL------PFHFVCACPKGYEPDAKTVEKARAAGISKIE---ITNDPAEAVKG 259 (348)
T ss_pred CCcCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHhCCCcEE---EEcCHHHHhCC
Confidence 56889 999999964 7888888888888 99887765442 122344554442 11 14688999999
Q ss_pred CCEEEEcc
Q 021218 179 SDLVLLLI 186 (316)
Q Consensus 179 ADIViLav 186 (316)
||+|..-+
T Consensus 260 aDVvy~~~ 267 (348)
T PLN02342 260 ADVVYTDV 267 (348)
T ss_pred CCEEEECC
Confidence 99999875
No 409
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=91.49 E-value=0.72 Score=46.42 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=49.6
Q ss_pred ccCCCCEEEEEcc-----c---chHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHHH----HHHCCceecCCCcC
Q 021218 107 AFNGINQIGVIGW-----G---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLG 170 (316)
Q Consensus 107 ~l~G~kkIGIIG~-----G---~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~t~~ 170 (316)
.++| +||+|+|- | ++..|++..+... |++|.+...++ +...+. +++.|...+ ...
T Consensus 184 ~l~g-~kVaivg~~~~~~g~~~~Va~Sl~~~~~~l------G~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~--~~~ 254 (395)
T PRK07200 184 NLKG-KKIAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFR--QVN 254 (395)
T ss_pred ccCC-CEEEEEeccccccCCcchHHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EEc
Confidence 3778 89999985 4 5678999988888 99887776552 121222 344553211 146
Q ss_pred CHHhhhccCCEEEEcc
Q 021218 171 DIYETISGSDLVLLLI 186 (316)
Q Consensus 171 ~~~e~i~~ADIViLav 186 (316)
+++|++++||+|..-+
T Consensus 255 d~~eav~~aDvVYtd~ 270 (395)
T PRK07200 255 SMEEAFKDADIVYPKS 270 (395)
T ss_pred CHHHHhCCCCEEEEcC
Confidence 8999999999999874
No 410
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=91.46 E-value=0.8 Score=45.68 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=25.4
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~ 133 (316)
.+-|+. .+|.|||+|-+|..+|++|...
T Consensus 37 q~~L~~-~~VlviG~GGlGs~va~~La~~ 64 (392)
T PRK07878 37 QKRLKN-ARVLVIGAGGLGSPTLLYLAAA 64 (392)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHc
Confidence 466778 9999999999999999999988
No 411
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=91.39 E-value=0.56 Score=46.61 Aligned_cols=65 Identities=26% Similarity=0.307 Sum_probs=43.7
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHH----HHH-HCCceecCCCcCCHHhhhccCCEEEEcc
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----EAR-AAGFTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~----~A~-~~G~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
+|.|||.|-.|.++|+.|++. |++|.+.+........ ..+ ..|+....+ .+ .+.++++|+||..-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~------G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g--~~-~~~~~~~d~vv~sp 70 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKK------GAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTG--LH-LEDLNNADLVVKSP 70 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHC------CCEEEEEeCCCCccchhHHHHHhhccCcEEEec--Cc-hHHhccCCEEEECC
Confidence 478999999999999999999 9988777654332221 112 246643211 23 45678899888754
No 412
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=91.38 E-value=0.78 Score=44.41 Aligned_cols=71 Identities=18% Similarity=0.209 Sum_probs=51.6
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcc----cHHH-HHHCCceecCCCcCCHHhhhccC
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAE-ARAAGFTEENGTLGDIYETISGS 179 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~----s~~~-A~~~G~~~~~~t~~~~~e~i~~A 179 (316)
..++| .+|++||- ++...|++..+... |++|.+...+.-. ..+. +++.|.... ...+++++++++
T Consensus 148 g~l~g-l~i~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~a 218 (304)
T PRK00779 148 GSLKG-LKVAWVGDGNNVANSLLLAAALL------GFDLRVATPKGYEPDPEIVEKIAKETGASIE--VTHDPKEAVKGA 218 (304)
T ss_pred CCcCC-cEEEEEeCCCccHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHcCCeEE--EEcCHHHHhCCC
Confidence 56888 99999996 78999999999988 9988776544311 1111 455663211 146899999999
Q ss_pred CEEEEc
Q 021218 180 DLVLLL 185 (316)
Q Consensus 180 DIViLa 185 (316)
|+|..-
T Consensus 219 Dvvy~~ 224 (304)
T PRK00779 219 DVVYTD 224 (304)
T ss_pred CEEEec
Confidence 999985
No 413
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=91.22 E-value=1.8 Score=39.43 Aligned_cols=92 Identities=18% Similarity=0.167 Sum_probs=59.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCCcccHHHHHHCCceecCCCcCCHHhh--hccCCEEEE
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--ISGSDLVLL 184 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~-Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~--i~~ADIViL 184 (316)
-+| .+|.|.|.|.+|.+.++.++.. |.+ |+.. +.+++..+.+++.|... ......++. -...|+|+-
T Consensus 96 ~~g-~~vlI~g~g~vg~~~i~~a~~~------g~~~vi~~-~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~d~vl~ 165 (277)
T cd08255 96 RLG-ERVAVVGLGLVGLLAAQLAKAA------GAREVVGV-DPDAARRELAEALGPAD--PVAADTADEIGGRGADVVIE 165 (277)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCcEEEE-CCCHHHHHHHHHcCCCc--cccccchhhhcCCCCCEEEE
Confidence 367 8999999999999999999988 877 5444 44444556777777221 111111111 135899988
Q ss_pred cccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 185 avp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++.... .+.+....++++..+++.+
T Consensus 166 ~~~~~~---~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 166 ASGSPS---ALETALRLLRDRGRVVLVG 190 (277)
T ss_pred ccCChH---HHHHHHHHhcCCcEEEEEe
Confidence 776433 4555666777777666554
No 414
>PRK07877 hypothetical protein; Provisional
Probab=91.20 E-value=0.38 Score=51.94 Aligned_cols=111 Identities=17% Similarity=0.201 Sum_probs=68.0
Q ss_pred hhhhhhccccchhhHHhhcCCc--ccccc----ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc--EEEEEecC
Q 021218 78 VFKKDMISLADRDEYIVRGGRD--LFNLL----PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRK 149 (316)
Q Consensus 78 ~~~~~~~~l~~~~e~vv~~G~w--~F~~~----~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~--~Vivg~r~ 149 (316)
+|+...+++.+-+|+. .=|+ +..++ ..-|+. .+|+|||+| +|..+|..|... |. ++.+.+..
T Consensus 71 pw~~~~v~~~~~~~~~--~~r~~Rn~~~ig~~~Q~~L~~-~~V~IvG~G-lGs~~a~~Lara------GvvG~l~lvD~D 140 (722)
T PRK07877 71 PWRRTVVHLLGPREFR--AVRLDRNRNKITAEEQERLGR-LRIGVVGLS-VGHAIAHTLAAE------GLCGELRLADFD 140 (722)
T ss_pred cchhheeecCCHHHhh--HHHhhchhhhCCHHHHHHHhc-CCEEEEEec-HHHHHHHHHHHc------cCCCeEEEEcCC
Confidence 6999999999988884 2234 11112 677888 999999999 899999999887 53 34444321
Q ss_pred C--c----------------ccHHHHHHC-----Cceec--CC--CcCCHHhhhccCCEEEEcccCchHHHHHHHH
Q 021218 150 G--S----------------RSFAEARAA-----GFTEE--NG--TLGDIYETISGSDLVLLLISDAAQADNYEKI 198 (316)
Q Consensus 150 ~--~----------------~s~~~A~~~-----G~~~~--~~--t~~~~~e~i~~ADIViLavp~~~~~~vi~ei 198 (316)
. . +....+++. .+..+ +. +..+.++.++++|+|+=|+-.-...-++++.
T Consensus 141 ~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~ 216 (722)
T PRK07877 141 TLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREA 216 (722)
T ss_pred EEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHH
Confidence 0 0 111111110 11100 00 1124667889999999998876665566643
No 415
>PRK06392 homoserine dehydrogenase; Provisional
Probab=91.15 E-value=0.67 Score=45.36 Aligned_cols=100 Identities=15% Similarity=0.133 Sum_probs=50.5
Q ss_pred CEEEEEcccchHHHHHHHHHhhhh--hhcCCcEEE-EEecCCc----c--cHHHH---HHCCce-ecCCCcCCHHhhh-c
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLA--EAKSDIVVK-VGLRKGS----R--SFAEA---RAAGFT-EENGTLGDIYETI-S 177 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~--~~g~G~~Vi-vg~r~~~----~--s~~~A---~~~G~~-~~~~t~~~~~e~i-~ 177 (316)
++|+|||+|++|..+++.|++.-+ ..|.+++|+ +.+++.. . ..+.. .+.|.. ..+....+.++++ .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 489999999999999999887311 112345543 3333321 1 01110 111211 0000011455543 4
Q ss_pred cCCEEEEcccCchH-HHHHHHHHhcCCCCcEEEEe
Q 021218 178 GSDLVLLLISDAAQ-ADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 178 ~ADIViLavp~~~~-~~vi~ei~~~mk~gaiLid~ 211 (316)
++|+||=|+|.... ...+.-+.+.|+.|..|+.+
T Consensus 81 ~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTa 115 (326)
T PRK06392 81 KPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTA 115 (326)
T ss_pred CCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcC
Confidence 78999999974321 11233344445667665543
No 416
>PRK08374 homoserine dehydrogenase; Provisional
Probab=91.12 E-value=1.7 Score=42.60 Aligned_cols=95 Identities=15% Similarity=0.167 Sum_probs=51.1
Q ss_pred CEEEEEcccchHHHHHHHHHhh---hh-hhcCCcEEE-EEecCCc----c--cH----HHHHHCCceec----CC-CcCC
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDS---LA-EAKSDIVVK-VGLRKGS----R--SF----AEARAAGFTEE----NG-TLGD 171 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~---~~-~~g~G~~Vi-vg~r~~~----~--s~----~~A~~~G~~~~----~~-t~~~ 171 (316)
.+|+|+|+|++|..+++.|.+. +. ..|..++|+ +.+++.. + .. +...+.|.... .+ ...+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 5899999999999999998773 11 122234443 3332211 0 01 11111121100 00 0115
Q ss_pred HHhhh--ccCCEEEEcccCchHHHHHHHHHhcCCCCcEEE
Q 021218 172 IYETI--SGSDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 172 ~~e~i--~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLi 209 (316)
.++++ .++|+||=++.+....+++.+.+ +.|.-|+
T Consensus 83 ~~ell~~~~~DVvVd~t~~~~a~~~~~~al---~~G~~VV 119 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDKNAHEWHLEAL---KEGKSVV 119 (336)
T ss_pred HHHHHhcCCCCEEEECCCcHHHHHHHHHHH---hhCCcEE
Confidence 66776 58999999998766656665544 3444444
No 417
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=90.87 E-value=3.2 Score=36.87 Aligned_cols=94 Identities=19% Similarity=0.238 Sum_probs=58.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhh-----hccCCE
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET-----ISGSDL 181 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~-----i~~ADI 181 (316)
.+| .+|.|.|.|.+|.++++.++.. |.+|+...++ +...+.+++.|.... +....+..+. -...|+
T Consensus 133 ~~~-~~vli~g~~~~G~~~~~~a~~~------g~~v~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPG-DTVLVLGAGGVGLLAAQLAKAA------GARVIVTDRS-DEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCE
Confidence 467 8999999999999999999988 8877665554 344555666653210 0001122222 246899
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++-++... ..+......++++..+++.+
T Consensus 205 vi~~~~~~---~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 205 VIDAVGGP---ETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EEECCCCH---HHHHHHHHhcccCCEEEEEc
Confidence 99888753 23444555666766666544
No 418
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=90.82 E-value=0.89 Score=42.17 Aligned_cols=88 Identities=18% Similarity=0.157 Sum_probs=57.3
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC----CceecCCCcCCHHhhhc---cCC
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETIS---GSD 180 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~----G~~~~~~t~~~~~e~i~---~AD 180 (316)
.+| ++|--||+|. | .++..+.+. |...+++.+.++...+.|++. ++. +..++.. ..|
T Consensus 118 ~~~-~~VLDiGcGs-G-~l~i~~~~~------g~~~v~giDis~~~l~~A~~n~~~~~~~-------~~~~~~~~~~~fD 181 (250)
T PRK00517 118 LPG-KTVLDVGCGS-G-ILAIAAAKL------GAKKVLAVDIDPQAVEAARENAELNGVE-------LNVYLPQGDLKAD 181 (250)
T ss_pred CCC-CEEEEeCCcH-H-HHHHHHHHc------CCCeEEEEECCHHHHHHHHHHHHHcCCC-------ceEEEccCCCCcC
Confidence 467 9999999998 5 455555555 554366777776665555442 321 0001111 579
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
+|+..........+++++...||||..++.+
T Consensus 182 ~Vvani~~~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 182 VIVANILANPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 9887666555667888999999999987754
No 419
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=90.80 E-value=4.1 Score=32.20 Aligned_cols=93 Identities=17% Similarity=0.188 Sum_probs=54.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHH----HCCceecCCCcCC----HHhhhccCC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGD----IYETISGSD 180 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~----~~G~~~~~~t~~~----~~e~i~~AD 180 (316)
.+ +++.-||+|. |.-....++.. +...+++.+.++...+.++ ..+.....-...+ ........|
T Consensus 19 ~~-~~vldlG~G~-G~~~~~l~~~~------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 19 PG-DVLWDIGAGS-GSITIEAARLV------PNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred CC-CEEEEeCCCC-CHHHHHHHHHC------CCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCC
Confidence 46 8999999998 43333333332 2223466666555444432 2222100000011 122335799
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEE
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLi 209 (316)
+|++..++....++++++.+.||||..++
T Consensus 91 ~v~~~~~~~~~~~~l~~~~~~Lk~gG~li 119 (124)
T TIGR02469 91 RVFIGGSGGLLQEILEAIWRRLRPGGRIV 119 (124)
T ss_pred EEEECCcchhHHHHHHHHHHHcCCCCEEE
Confidence 99998877777789999999999988765
No 420
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=90.76 E-value=0.94 Score=45.00 Aligned_cols=72 Identities=13% Similarity=0.093 Sum_probs=49.1
Q ss_pred cccCCCCEEEEEccc--------chHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHHH----HHHCCceecCCCc
Q 021218 106 DAFNGINQIGVIGWG--------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTL 169 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G--------~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~t~ 169 (316)
..|+| +||+|+|.| ++..|++..+... |+++.+...++ +...+. +++.|...+ ..
T Consensus 166 ~~l~g-~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~--~~ 236 (357)
T TIGR03316 166 ENLKG-KKFAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFN--IV 236 (357)
T ss_pred cccCC-CEEEEEeccccccCccchHHHHHHHHHHHc------CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEE--EE
Confidence 34788 899999854 4457888888888 99887776542 122222 334563311 14
Q ss_pred CCHHhhhccCCEEEEcc
Q 021218 170 GDIYETISGSDLVLLLI 186 (316)
Q Consensus 170 ~~~~e~i~~ADIViLav 186 (316)
.+++|+++++|+|..-.
T Consensus 237 ~d~~ea~~~aDvvyt~~ 253 (357)
T TIGR03316 237 NSMDEAFKDADIVYPKS 253 (357)
T ss_pred cCHHHHhCCCCEEEECC
Confidence 68999999999999874
No 421
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=90.74 E-value=1.9 Score=41.64 Aligned_cols=95 Identities=16% Similarity=0.136 Sum_probs=59.1
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCC-cCCHHhhhccCCEEEEc
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLL 185 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t-~~~~~e~i~~ADIViLa 185 (316)
.+| .++.|+|.|.+|...++.++.. |.++++..+.+++....+++.|.... +.. .....+.....|+++=+
T Consensus 179 ~~g-~~vlV~G~G~vG~~av~~Ak~~------G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~ 251 (357)
T PLN02514 179 QSG-LRGGILGLGGVGHMGVKIAKAM------GHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDT 251 (357)
T ss_pred CCC-CeEEEEcccHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEEC
Confidence 368 8999999999999999999998 88776666554443334445775310 000 00122223457999988
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+.... .+++..+.++++..++..+
T Consensus 252 ~g~~~---~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 252 VPVFH---PLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred CCchH---HHHHHHHHhccCCEEEEEC
Confidence 87432 3444555677777666543
No 422
>PRK14031 glutamate dehydrogenase; Provisional
Probab=90.73 E-value=1 Score=46.01 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=31.7
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEec
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r 148 (316)
.+|+| +++.|.|.|+.|...|+.|.+. |.+|+...+
T Consensus 224 ~~l~g-~rVaVQGfGNVG~~aA~~L~e~------GAkVVaVSD 259 (444)
T PRK14031 224 TDLKG-KVCLVSGSGNVAQYTAEKVLEL------GGKVVTMSD 259 (444)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEC
Confidence 47999 9999999999999999999998 998776443
No 423
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=90.72 E-value=0.46 Score=46.42 Aligned_cols=71 Identities=20% Similarity=0.157 Sum_probs=40.7
Q ss_pred CEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC--Cceec--CC-CcC-CHHhhhccCCEEEEc
Q 021218 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEE--NG-TLG-DIYETISGSDLVLLL 185 (316)
Q Consensus 112 kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~--G~~~~--~~-t~~-~~~e~i~~ADIViLa 185 (316)
+||+|||.|.+|.++|..|... +.+-++.+.+.......-.+.+. +.... +. ... ...+.+++||+|++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~----~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvit 76 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQ----GLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVIT 76 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcc----cccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEe
Confidence 5899999999999999999554 11335555555422221111111 10000 00 011 125678999999998
Q ss_pred c
Q 021218 186 I 186 (316)
Q Consensus 186 v 186 (316)
.
T Consensus 77 A 77 (313)
T COG0039 77 A 77 (313)
T ss_pred C
Confidence 7
No 424
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=90.71 E-value=2 Score=40.63 Aligned_cols=91 Identities=21% Similarity=0.258 Sum_probs=61.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhhc---cCC
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETIS---GSD 180 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~----~G~~~~~~t~~~~~e~i~---~AD 180 (316)
|.| ++|-=||+| |+.++.-+.+. |.+| .+.|-.++.++.|+. .|... +-...+.+|+.. +-|
T Consensus 58 l~g-~~vLDvGCG--gG~Lse~mAr~------Ga~V-tgiD~se~~I~~Ak~ha~e~gv~i-~y~~~~~edl~~~~~~FD 126 (243)
T COG2227 58 LPG-LRVLDVGCG--GGILSEPLARL------GASV-TGIDASEKPIEVAKLHALESGVNI-DYRQATVEDLASAGGQFD 126 (243)
T ss_pred CCC-CeEEEecCC--ccHhhHHHHHC------CCee-EEecCChHHHHHHHHhhhhccccc-cchhhhHHHHHhcCCCcc
Confidence 789 999999998 56777776666 8764 577777777776663 34331 111235566655 578
Q ss_pred EEEE-----cccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 181 LVLL-----LISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 181 IViL-----avp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
+|+. |+|+.+. ++.....++|||.++.++
T Consensus 127 vV~cmEVlEHv~dp~~--~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 127 VVTCMEVLEHVPDPES--FLRACAKLVKPGGILFLS 160 (243)
T ss_pred EEEEhhHHHccCCHHH--HHHHHHHHcCCCcEEEEe
Confidence 8775 4554433 777888999999987765
No 425
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=90.67 E-value=2.4 Score=40.81 Aligned_cols=94 Identities=22% Similarity=0.286 Sum_probs=57.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHh----hh--ccCCE
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TI--SGSDL 181 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e----~i--~~ADI 181 (316)
+| +++.|+|.|.+|...++.++.. |.+.++..+.+++..+.+++.|...- +....+..+ .. ...|+
T Consensus 176 ~g-~~VlV~G~g~vG~~a~~~ak~~------G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 176 RG-DSVAVIGCGGVGDAAIAGAALA------GASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCE
Confidence 57 8999999999999999999998 87533444444556777788875210 101112222 12 14788
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
|+=++-.. ..+++....++++-.++.++
T Consensus 249 vid~~g~~---~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 249 VIDAVGRP---ETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred EEECCCCH---HHHHHHHHHhccCCEEEEEC
Confidence 88777642 23444445566666665443
No 426
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.63 E-value=1 Score=47.62 Aligned_cols=72 Identities=22% Similarity=0.202 Sum_probs=50.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--------------------ccHHHHHHCCceecCCC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~t 168 (316)
.| ++|.|||.|..|.+.|..|+.. |++|.+.++... ...+..++.|+...-++
T Consensus 326 ~~-~~VaIIGaGpAGLsaA~~L~~~------G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~ 398 (654)
T PRK12769 326 SD-KRVAIIGAGPAGLACADVLARN------GVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNC 398 (654)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCC
Confidence 57 9999999999999999999998 998888776422 02345566775431111
Q ss_pred ----cCCHHhhhccCCEEEEccc
Q 021218 169 ----LGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 169 ----~~~~~e~i~~ADIViLavp 187 (316)
..+.++...+.|.|++++-
T Consensus 399 ~v~~~i~~~~~~~~~DavilAtG 421 (654)
T PRK12769 399 EVGKDISLESLLEDYDAVFVGVG 421 (654)
T ss_pred EeCCcCCHHHHHhcCCEEEEeCC
Confidence 1134455568999999873
No 427
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=90.59 E-value=0.87 Score=41.53 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=47.1
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHH-CCceecCCCcCC----HHhhh-cc
Q 021218 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGD----IYETI-SG 178 (316)
Q Consensus 106 ~~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~t~~~----~~e~i-~~ 178 (316)
+...+ |+|.|+| .|.+|..+++.|.+. |++|+...|+.++....... .++........+ ..+.+ ..
T Consensus 13 ~~~~~-~~ilItGasG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~ 85 (251)
T PLN00141 13 ENVKT-KTVFVAGATGRTGKRIVEQLLAK------GFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDD 85 (251)
T ss_pred ccccC-CeEEEECCCcHHHHHHHHHHHhC------CCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcC
Confidence 44566 9999999 599999999999998 99887766654322111111 122111111222 33455 58
Q ss_pred CCEEEEcccC
Q 021218 179 SDLVLLLISD 188 (316)
Q Consensus 179 ADIViLavp~ 188 (316)
.|+||.+.+.
T Consensus 86 ~d~vi~~~g~ 95 (251)
T PLN00141 86 SDAVICATGF 95 (251)
T ss_pred CCEEEECCCC
Confidence 9999988654
No 428
>PRK01581 speE spermidine synthase; Validated
Probab=90.52 E-value=2.4 Score=42.49 Aligned_cols=97 Identities=16% Similarity=0.217 Sum_probs=57.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC---------CceecCC---CcCCHHhhh
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---------GFTEENG---TLGDIYETI 176 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~---------G~~~~~~---t~~~~~e~i 176 (316)
...++|-|||.| .|..+...++.. +..-+...+.++...+.|++. .+.+ .. ...|..+.+
T Consensus 149 ~~PkrVLIIGgG-dG~tlrelLk~~------~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~D-pRV~vvi~Da~~fL 220 (374)
T PRK01581 149 IDPKRVLILGGG-DGLALREVLKYE------TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFD-NRVNVHVCDAKEFL 220 (374)
T ss_pred CCCCEEEEECCC-HHHHHHHHHhcC------CCCeEEEEeCCHHHHHHHHhccccchhccccCCC-CceEEEECcHHHHH
Confidence 333899999998 455555455433 333355566666777777752 1100 00 023434433
Q ss_pred ----ccCCEEEEcccCchH--------HHHHHHHHhcCCCCcEEEEeCC
Q 021218 177 ----SGSDLVLLLISDAAQ--------ADNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 177 ----~~ADIViLavp~~~~--------~~vi~ei~~~mk~gaiLid~aG 213 (316)
.+-|+||+-+|+... .++++.+...|+||-+++.-++
T Consensus 221 ~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 221 SSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred HhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 245999999876421 3467788899999998765443
No 429
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=90.42 E-value=2.3 Score=41.68 Aligned_cols=92 Identities=20% Similarity=0.199 Sum_probs=59.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhhccCCEEEEc
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~---~~e~i~~ADIViLa 185 (316)
.| .++.|.|.|.+|...++.++.. |.+|++..+..++..+.+++.|....-. ..+ ..+.....|+|+=+
T Consensus 178 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~-~~~~~~v~~~~~~~D~vid~ 249 (375)
T PLN02178 178 SG-KRLGVNGLGGLGHIAVKIGKAF------GLRVTVISRSSEKEREAIDRLGADSFLV-TTDSQKMKEAVGTMDFIIDT 249 (375)
T ss_pred CC-CEEEEEcccHHHHHHHHHHHHc------CCeEEEEeCChHHhHHHHHhCCCcEEEc-CcCHHHHHHhhCCCcEEEEC
Confidence 68 9999999999999999999998 9887666555444456667777631000 011 22223457999988
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
+.... .+.+..+.++++..++.+
T Consensus 250 ~G~~~---~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 250 VSAEH---ALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred CCcHH---HHHHHHHhhcCCCEEEEE
Confidence 76432 344444556666665544
No 430
>PRK07411 hypothetical protein; Validated
Probab=90.39 E-value=0.9 Score=45.37 Aligned_cols=88 Identities=10% Similarity=0.034 Sum_probs=53.2
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCC-------------------cccHHHH---HH--
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEA---RA-- 159 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~-------------------~~s~~~A---~~-- 159 (316)
...|+. .+|.|||+|-+|..++++|... |+ ++.+.+... .+....+ ++
T Consensus 33 q~~L~~-~~VlivG~GGlG~~va~~La~~------Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~n 105 (390)
T PRK07411 33 QKRLKA-ASVLCIGTGGLGSPLLLYLAAA------GIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEIN 105 (390)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHC
Confidence 467888 9999999999999999999988 65 333333210 0111011 11
Q ss_pred CCceec--CCCc--CCHHhhhccCCEEEEcccCchHHHHHHHHH
Q 021218 160 AGFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (316)
Q Consensus 160 ~G~~~~--~~t~--~~~~e~i~~ADIViLavp~~~~~~vi~ei~ 199 (316)
..+..+ .... .+..+.++++|+|+.|+=.-....++++..
T Consensus 106 p~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 149 (390)
T PRK07411 106 PYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDAC 149 (390)
T ss_pred CCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 111100 0111 234567899999999887766666777543
No 431
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.31 E-value=0.96 Score=44.64 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=70.2
Q ss_pred hhhhhhccccchhhHHhhcCCc--c--------------------cccc--ccccCCCCEEEEEcccchHHHHHHHHHhh
Q 021218 78 VFKKDMISLADRDEYIVRGGRD--L--------------------FNLL--PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (316)
Q Consensus 78 ~~~~~~~~l~~~~e~vv~~G~w--~--------------------F~~~--~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~ 133 (316)
+.+..+++-.+|++|++-..+. + |.-+ -.--+| +.+||+|+|-+|.==.+..++.
T Consensus 126 ~~~DGt~~~ggf~~~~~v~~~~a~kIP~~~pl~~aAPlLCaGITvYspLk~~g~~pG-~~vgI~GlGGLGh~aVq~AKAM 204 (360)
T KOG0023|consen 126 VYHDGTITQGGFQEYAVVDEVFAIKIPENLPLASAAPLLCAGITVYSPLKRSGLGPG-KWVGIVGLGGLGHMAVQYAKAM 204 (360)
T ss_pred cccCCCCccCccceeEEEeeeeEEECCCCCChhhccchhhcceEEeehhHHcCCCCC-cEEEEecCcccchHHHHHHHHh
Confidence 3445666777888887655554 0 2111 011178 9999999988877666777777
Q ss_pred hhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCC---HHhhhccCCEEEEcccCchHHHHHHHHHhcCCCCcEEE
Q 021218 134 LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD---IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (316)
Q Consensus 134 ~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~---~~e~i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLi 209 (316)
|++|++..+.+.+..+.-...|...- + ...+ ..++...-|.++-+++.- ...-++....+||++-.|+
T Consensus 205 ------G~rV~vis~~~~kkeea~~~LGAd~fv~-~~~d~d~~~~~~~~~dg~~~~v~~~-a~~~~~~~~~~lk~~Gt~V 276 (360)
T KOG0023|consen 205 ------GMRVTVISTSSKKKEEAIKSLGADVFVD-STEDPDIMKAIMKTTDGGIDTVSNL-AEHALEPLLGLLKVNGTLV 276 (360)
T ss_pred ------CcEEEEEeCCchhHHHHHHhcCcceeEE-ecCCHHHHHHHHHhhcCcceeeeec-cccchHHHHHHhhcCCEEE
Confidence 99987776654343333333553210 0 0111 233444556666666643 2224455566676666555
Q ss_pred Ee
Q 021218 210 LS 211 (316)
Q Consensus 210 d~ 211 (316)
.+
T Consensus 277 ~v 278 (360)
T KOG0023|consen 277 LV 278 (360)
T ss_pred EE
Confidence 43
No 432
>PRK08265 short chain dehydrogenase; Provisional
Probab=90.28 E-value=1.4 Score=40.30 Aligned_cols=39 Identities=21% Similarity=0.077 Sum_probs=32.7
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~ 151 (316)
.+++| +++-|.|. |-+|.++++.|.+. |.+|++..|+.+
T Consensus 2 ~~~~~-k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~~ 41 (261)
T PRK08265 2 IGLAG-KVAIVTGGATLIGAAVARALVAA------GARVAIVDIDAD 41 (261)
T ss_pred CCCCC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHH
Confidence 45788 99999995 89999999999998 998887776543
No 433
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=90.28 E-value=2.3 Score=40.73 Aligned_cols=161 Identities=16% Similarity=0.210 Sum_probs=93.9
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccH-----HHH---HHCCceecCCCcCCHHhhhccCCE
Q 021218 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-----AEA---RAAGFTEENGTLGDIYETISGSDL 181 (316)
Q Consensus 111 ~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~-----~~A---~~~G~~~~~~t~~~~~e~i~~ADI 181 (316)
|++|+|.|. |.||+.+.+.+... .++++.-+.++..... .+. ...|+.. ..+......++|+
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~-----~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v----~~~~~~~~~~~DV 72 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA-----PDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPV----TDDLLLVKADADV 72 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC-----CCceEEEEEecCCccccccchhhhccccccCcee----ecchhhcccCCCE
Confidence 489999997 99999999999876 1356555544432211 011 1122332 2346677889999
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEEeCCchhhhhhccccCCCCCccEEEeccCCCchh--hHH-HHhcCccccCCC
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS--VRR-LYVQGKEINGAG 258 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid~aGv~l~~l~~~~~~~~~~i~vI~vhPn~pg~~--~r~-lf~~G~e~~G~G 258 (316)
+|=-+-|....++++....+= -.+|+=..|++-+.++... .+-+.+++| ..||+.--. +-. .....+-..++.
T Consensus 73 ~IDFT~P~~~~~~l~~~~~~~--~~lVIGTTGf~~e~~~~l~-~~a~~v~vv-~a~NfSiGvnll~~l~~~aak~l~~~D 148 (266)
T COG0289 73 LIDFTTPEATLENLEFALEHG--KPLVIGTTGFTEEQLEKLR-EAAEKVPVV-IAPNFSLGVNLLFKLAEQAAKVLDDYD 148 (266)
T ss_pred EEECCCchhhHHHHHHHHHcC--CCeEEECCCCCHHHHHHHH-HHHhhCCEE-EeccchHHHHHHHHHHHHHHHhcCCCC
Confidence 999999988888887555432 2356677888744333211 112334444 567775433 111 111111111122
Q ss_pred ceEEEeecc-----CCCHHHHHHHHHHHHHcC
Q 021218 259 INSSFAVHQ-----DVDGRATNVALGWSVALG 285 (316)
Q Consensus 259 ~~~iiap~~-----d~~~~a~e~a~~l~~alG 285 (316)
+-. |--|. -.++.|+.+++.+.+..|
T Consensus 149 iEI-iE~HHr~K~DAPSGTAl~lae~ia~~~~ 179 (266)
T COG0289 149 IEI-IEAHHRHKKDAPSGTALKLAEAIAEARG 179 (266)
T ss_pred EEe-hhhhcccCCCCCcHHHHHHHHHHHHhhc
Confidence 322 32222 467899999999999999
No 434
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=90.26 E-value=1.1 Score=43.39 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=50.6
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCc----ccHHH----HHHCCceecCCCcCCHHhhh
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAE----ARAAGFTEENGTLGDIYETI 176 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~----~s~~~----A~~~G~~~~~~t~~~~~e~i 176 (316)
..++| .+|++||- .++..|++..+... |++|.+...+.- ...+. +.+.|...+ ...++++++
T Consensus 144 g~l~g-~~v~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 214 (304)
T TIGR00658 144 GKLKG-VKVVYVGDGNNVCNSLMLAGAKL------GMDVVVATPEGYEPDADIVKKAQEIAKENGGSVE--LTHDPVEAV 214 (304)
T ss_pred CCCCC-cEEEEEeCCCchHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 45788 99999995 78999999999988 998877654321 11122 344553211 146899999
Q ss_pred ccCCEEEEcc
Q 021218 177 SGSDLVLLLI 186 (316)
Q Consensus 177 ~~ADIViLav 186 (316)
+++|+|..-+
T Consensus 215 ~~aDvvy~~~ 224 (304)
T TIGR00658 215 KGADVIYTDV 224 (304)
T ss_pred CCCCEEEEcC
Confidence 9999999853
No 435
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.14 E-value=1.8 Score=39.13 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=31.3
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 021218 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (316)
Q Consensus 107 ~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~ 151 (316)
.++| |++-|+| .|-+|.++|+.|.+. |.+|++..++.+
T Consensus 4 ~l~~-k~~lItGas~gIG~~~a~~l~~~------G~~v~~~~~~~~ 42 (255)
T PRK06463 4 RFKG-KVALITGGTRGIGRAIAEAFLRE------GAKVAVLYNSAE 42 (255)
T ss_pred CcCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCcH
Confidence 4678 9999999 589999999999998 988877655543
No 436
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=90.13 E-value=1.6 Score=46.39 Aligned_cols=98 Identities=14% Similarity=0.056 Sum_probs=57.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-E--EEEecCCc------ccHHHHHHCC--ce--ecC-CCcCCHHh
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-V--KVGLRKGS------RSFAEARAAG--FT--EEN-GTLGDIYE 174 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~-V--ivg~r~~~------~s~~~A~~~G--~~--~~~-~t~~~~~e 174 (316)
+. .||+|||.|.+|.++...|..+ |.. + ++.+...+ +..+.|++.+ +. ..+ ....+..+
T Consensus 128 R~-akVlVlG~Gg~~s~lv~sL~~s------G~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~e 200 (637)
T TIGR03693 128 RN-AKILAAGSGDFLTKLVRSLIDS------GFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHE 200 (637)
T ss_pred hc-ccEEEEecCchHHHHHHHHHhc------CCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHH
Confidence 56 8999999999999999999988 752 2 22232211 2234555522 11 101 11356788
Q ss_pred hhccCCEEEEcccCchHH--HHHHHHHhcCCCCcEEEEeCC
Q 021218 175 TISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILGLSHG 213 (316)
Q Consensus 175 ~i~~ADIViLavp~~~~~--~vi~ei~~~mk~gaiLid~aG 213 (316)
+++..|+|++.+-+.... +.+++..-.-+.+-+.....|
T Consensus 201 v~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G 241 (637)
T TIGR03693 201 AFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLK 241 (637)
T ss_pred hhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEcc
Confidence 999999999988755544 345543322222223344444
No 437
>PLN02527 aspartate carbamoyltransferase
Probab=90.09 E-value=1 Score=43.61 Aligned_cols=72 Identities=17% Similarity=0.126 Sum_probs=50.0
Q ss_pred cccCCCCEEEEEccc---chHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHHHHHHCCceecCCCcCCHHhhhcc
Q 021218 106 DAFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISG 178 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G---~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~~A~~~G~~~~~~t~~~~~e~i~~ 178 (316)
..++| .||++||-+ ++..|++..+... .|+++.+...+. +...+.+++.|.... ...++++++++
T Consensus 147 g~l~g-~kva~vGD~~~~rv~~Sl~~~~~~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~ 218 (306)
T PLN02527 147 GRLDG-IKVGLVGDLANGRTVRSLAYLLAKY-----EDVKIYFVAPDVVKMKDDIKDYLTSKGVEWE--ESSDLMEVASK 218 (306)
T ss_pred CCcCC-CEEEEECCCCCChhHHHHHHHHHhc-----CCCEEEEECCCccCCCHHHHHHHHHcCCEEE--EEcCHHHHhCC
Confidence 45889 999999976 5789999887764 167776665432 223344555554321 14689999999
Q ss_pred CCEEEEc
Q 021218 179 SDLVLLL 185 (316)
Q Consensus 179 ADIViLa 185 (316)
||+|...
T Consensus 219 aDvvyt~ 225 (306)
T PLN02527 219 CDVLYQT 225 (306)
T ss_pred CCEEEEC
Confidence 9999984
No 438
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=90.04 E-value=0.88 Score=45.67 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=44.0
Q ss_pred EEEEEcccchHHH-HHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021218 113 QIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (316)
Q Consensus 113 kIGIIG~G~mG~A-lA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLa 185 (316)
+|-|||.|-.|.+ +|+.|++. |++|.+.+.......+..++.|+... .....+.++++|+||+.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~------G~~v~~~D~~~~~~~~~l~~~gi~~~---~g~~~~~~~~~d~vV~s 65 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNR------GYQVSGSDIAENATTKRLEALGIPIY---IGHSAENLDDADVVVVS 65 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHC------CCeEEEECCCcchHHHHHHHCcCEEe---CCCCHHHCCCCCEEEEC
Confidence 3789999999998 99999999 99987766543332333445576532 11223457789998875
No 439
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=90.02 E-value=0.68 Score=44.86 Aligned_cols=62 Identities=23% Similarity=0.226 Sum_probs=40.3
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCC---HHhhhccCCEEEE
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGD---IYETISGSDLVLL 184 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~t~~~---~~e~i~~ADIViL 184 (316)
+|||||.|..|..+++.+++. |+++++.+.... .....+. .-+.. ...| +.++++.+|+|..
T Consensus 1 ~igiiG~gql~~~l~~aa~~l------G~~v~~~d~~~~~p~~~~ad-~~~~~---~~~d~~~i~~~a~~~dvit~ 66 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPL------GIKVHVLDPDANSPAVQVAD-HVVLA---PFFDPAAIRELAESCDVITF 66 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHc------CCEEEEECCCCCCChhHhCc-eeEeC---CCCCHHHHHHHHhhCCEEEe
Confidence 589999999999999999998 998777655422 2222221 11111 1223 5567788998754
No 440
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=90.00 E-value=1.2 Score=43.57 Aligned_cols=95 Identities=18% Similarity=0.140 Sum_probs=52.3
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecC-CcccHHHHHHCCce---------ecC------CC---c---C
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFT---------EEN------GT---L---G 170 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~-~~~s~~~A~~~G~~---------~~~------~t---~---~ 170 (316)
+|||+|.|.||..+.+.+.+. +.+.+++|.-..+. +.+......+++-+ .++ +. + .
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~--~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~ 78 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYES--GERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSP 78 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhc--CCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcC
Confidence 589999999999999998764 00013554433332 22233334343311 000 00 1 1
Q ss_pred CHHhh---hccCCEEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 171 DIYET---ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 171 ~~~e~---i~~ADIViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++++. -.+.|+|+.|++.....+..... ++.|+.+++.+
T Consensus 79 ~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~---l~aGa~~V~~S 120 (325)
T TIGR01532 79 TPEALPWRALGVDLVLDCTGVYGNREQGERH---IRAGAKRVLFS 120 (325)
T ss_pred ChhhccccccCCCEEEEccchhccHHHHHHH---HHcCCeEEEec
Confidence 23221 14899999999988776665543 34566555443
No 441
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=90.00 E-value=1 Score=45.53 Aligned_cols=39 Identities=23% Similarity=0.374 Sum_probs=33.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 021218 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~ 151 (316)
.+|+| ++|+|=|+||.|.-.|+.|.+. |.+|+...+...
T Consensus 203 ~~l~G-~rVaVQG~GNVg~~aa~~l~~~------GAkvva~sds~g 241 (411)
T COG0334 203 DDLEG-ARVAVQGFGNVGQYAAEKLHEL------GAKVVAVSDSKG 241 (411)
T ss_pred CCcCC-CEEEEECccHHHHHHHHHHHHc------CCEEEEEEcCCC
Confidence 45999 9999999999999999999988 988877666543
No 442
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=89.78 E-value=1.1 Score=44.19 Aligned_cols=71 Identities=13% Similarity=0.048 Sum_probs=49.6
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHHH----HHHCCceecCCCcCCHHhhhc
Q 021218 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETIS 177 (316)
Q Consensus 107 ~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~t~~~~~e~i~ 177 (316)
.|+| .+|++||- .++..|++..+... |++|.+...+. +.-.+. ++..|.... ...+++|+++
T Consensus 151 ~l~g-lkv~~vGD~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~ 221 (338)
T PRK02255 151 KLED-CKVVFVGDATQVCVSLMFIATKM------GMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVL--VTDDVDEAVK 221 (338)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHhC------CCEEEEECCCccccCHHHHHHHHHHHHhcCCeEE--EEcCHHHHhC
Confidence 5889 99999996 58888888888888 99887765442 122222 233453211 1468999999
Q ss_pred cCCEEEEcc
Q 021218 178 GSDLVLLLI 186 (316)
Q Consensus 178 ~ADIViLav 186 (316)
++|+|..-+
T Consensus 222 ~aDvvy~~~ 230 (338)
T PRK02255 222 DADFVYTDV 230 (338)
T ss_pred CCCEEEEcc
Confidence 999999843
No 443
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.69 E-value=4 Score=36.14 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=31.9
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 021218 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (316)
Q Consensus 107 ~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~ 151 (316)
+++| ++|-|.|. |.+|.++++.+.+. |.+|++..|+.+
T Consensus 2 ~~~~-~~vlItGa~g~iG~~~a~~l~~~------G~~V~~~~r~~~ 40 (238)
T PRK05786 2 RLKG-KKVAIIGVSEGLGYAVAYFALKE------GAQVCINSRNEN 40 (238)
T ss_pred CcCC-cEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHH
Confidence 3678 99999995 78999999999988 998887777644
No 444
>PRK06153 hypothetical protein; Provisional
Probab=89.46 E-value=0.97 Score=45.49 Aligned_cols=88 Identities=10% Similarity=0.159 Sum_probs=53.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecC----------C------------cccHHHH---H
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK----------G------------SRSFAEA---R 158 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~----------~------------~~s~~~A---~ 158 (316)
.+.|++ ++|+|||+|-.|..++..|.+. |. ++.+.+.. . .+....+ .
T Consensus 171 q~kL~~-~~VaIVG~GG~GS~Va~~LAR~------GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~ 243 (393)
T PRK06153 171 SAKLEG-QRIAIIGLGGTGSYILDLVAKT------PVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYS 243 (393)
T ss_pred HHHHhh-CcEEEEcCCccHHHHHHHHHHc------CCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHH
Confidence 367888 9999999999999999999998 65 34333221 0 0000011 1
Q ss_pred HCC--ceecCCCc-CCHHhhhccCCEEEEcccCchHHHHHHHHH
Q 021218 159 AAG--FTEENGTL-GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (316)
Q Consensus 159 ~~G--~~~~~~t~-~~~~e~i~~ADIViLavp~~~~~~vi~ei~ 199 (316)
+.+ +....... .+..+.+.++|+||.|+-......++.+..
T Consensus 244 ~in~~I~~~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a 287 (393)
T PRK06153 244 NMRRGIVPHPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYL 287 (393)
T ss_pred HhCCeEEEEeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHH
Confidence 111 21111111 122346789999999999888777776543
No 445
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=89.39 E-value=0.66 Score=44.81 Aligned_cols=97 Identities=13% Similarity=0.060 Sum_probs=66.8
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcC-CcEEEEEecCCcccHHHHHHCC-----ceecCCCcCCHHhhhccCCEEEEcc
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKS-DIVVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGSDLVLLLI 186 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~-G~~Vivg~r~~~~s~~~A~~~G-----~~~~~~t~~~~~e~i~~ADIViLav 186 (316)
-+.|+|.|.++........+. .. =.+|.+++|+++.+.+.|.... +..+-....+.+++++.+|||+-++
T Consensus 140 vL~i~GsG~qA~~hi~ih~~~----~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~at 215 (333)
T KOG3007|consen 140 VLTIFGSGLQAFWHIYIHIKL----IPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGAT 215 (333)
T ss_pred EEEEEcccchhHHHHHHHHHh----cccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecc
Confidence 467999999999988876664 01 1268899999887777776321 1111112457889999999999998
Q ss_pred cCchHHHHHHHHHhcCCCCcEEEEeCCchhh
Q 021218 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (316)
Q Consensus 187 p~~~~~~vi~ei~~~mk~gaiLid~aGv~l~ 217 (316)
+-..-. ++ ...+|||+.|-.+++++..
T Consensus 216 lstePi-lf---gewlkpgthIdlVGsf~p~ 242 (333)
T KOG3007|consen 216 LSTEPI-LF---GEWLKPGTHIDLVGSFKPV 242 (333)
T ss_pred ccCCce-ee---eeeecCCceEeeeccCCch
Confidence 854311 11 2457899888888888743
No 446
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=89.38 E-value=2.3 Score=42.95 Aligned_cols=95 Identities=14% Similarity=0.054 Sum_probs=64.0
Q ss_pred cccCCCCEEEEEcc----------cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCH-Hh
Q 021218 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI-YE 174 (316)
Q Consensus 106 ~~l~G~kkIGIIG~----------G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~-~e 174 (316)
+.++| ++|+|.|+ .+-+..++..|++. |.+|.+++..-. ..+..+..+.. +. ..
T Consensus 310 ~~~~~-~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~------g~~V~~~DP~v~-~~~~~~~~~~~-------~~~~~ 374 (425)
T PRK15182 310 INVEG-SSVLILGFTFKENCPDIRNTRIIDVVKELGKY------SCKVDIFDPWVD-AEEVRREYGII-------PVSEV 374 (425)
T ss_pred CCCCC-CEEEEEEeEeCCCCCccccCcHHHHHHHHHhC------CCEEEEECCCCC-hhHHHHhcCcc-------cchhh
Confidence 35789 99999998 56777888888888 988877754311 11111223432 11 22
Q ss_pred hhccCCEEEEcccCchHHHH-HHHHHhcCCCCcEEEEeCCch
Q 021218 175 TISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 175 ~i~~ADIViLavp~~~~~~v-i~ei~~~mk~gaiLid~aGv~ 215 (316)
++++||.|++++.-.+..++ ++++...|+...+|+|..++.
T Consensus 375 ~~~~ad~vvi~t~h~~f~~~~~~~~~~~~~~~~~iiD~r~~~ 416 (425)
T PRK15182 375 KSSHYDAIIVAVGHQQFKQMGSEDIRGFGKDKHVLYDLKYVL 416 (425)
T ss_pred hhcCCCEEEEccCCHHhhcCCHHHHHHhcCCCCEEEECCCCC
Confidence 47789999999998877653 556666677556888977653
No 447
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=89.38 E-value=0.52 Score=46.13 Aligned_cols=34 Identities=32% Similarity=0.336 Sum_probs=30.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 111 ~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
|++|.|||.|.+|.+.|..|.+. |.+|++.++..
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~------g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQR------GYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCC
Confidence 57999999999999999999998 99998888764
No 448
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=89.27 E-value=3 Score=40.40 Aligned_cols=91 Identities=18% Similarity=0.228 Sum_probs=55.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc-----cCCE
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDL 181 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i~-----~ADI 181 (316)
+| .++.|+|.|.+|...++.++.. |. +|++ .+.++...+.+++.|...- +....+..+.+. ..|+
T Consensus 191 ~g-~~VlV~G~G~vG~~a~~lak~~------G~~~Vi~-~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 191 PG-QSVAVVGLGGVGLSALLGAVAA------GASQVVA-VDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCcEEE-EcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 57 8999999999999999999988 88 4544 4444556677888886310 100012112121 4788
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEE
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGL 210 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid 210 (316)
|+-++.... .+......++++..++.
T Consensus 263 vid~~G~~~---~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 263 AFEMAGSVP---ALETAYEITRRGGTTVT 288 (371)
T ss_pred EEECCCChH---HHHHHHHHHhcCCEEEE
Confidence 888875332 33333445556555543
No 449
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=89.23 E-value=2.6 Score=40.16 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=36.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCc
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~ 162 (316)
+| +++.|.|.|.+|...++.++.. |.++++....++...+.+++.|.
T Consensus 160 ~g-~~vlV~G~g~vG~~~~~~a~~~------G~~~v~~~~~~~~~~~~~~~~Ga 206 (347)
T PRK10309 160 EG-KNVIIIGAGTIGLLAIQCAVAL------GAKSVTAIDINSEKLALAKSLGA 206 (347)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHHHHcCC
Confidence 58 8999999999999999999998 88654554444555666777775
No 450
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=89.13 E-value=3.2 Score=39.23 Aligned_cols=93 Identities=20% Similarity=0.152 Sum_probs=57.3
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCCcccHHHHHHCCceec-CCCcCCHH---hhhc--cCC
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDIY---ETIS--GSD 180 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~-Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~---e~i~--~AD 180 (316)
.+| .++.|+|.|.+|...++.++.. |.+ |++.. .+++..+.+++.|...- +....+.+ +... ..|
T Consensus 162 ~~g-~~vlV~G~G~vG~~~~~~ak~~------G~~~vi~~~-~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d 233 (339)
T cd08239 162 SGR-DTVLVVGAGPVGLGALMLARAL------GAEDVIGVD-PSPERLELAKALGADFVINSGQDDVQEIRELTSGAGAD 233 (339)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEC-CCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCC
Confidence 458 9999999999999999999988 887 65544 44455667777775210 10001111 2222 478
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
+|+-++..... +.+....++++..++..
T Consensus 234 ~vid~~g~~~~---~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 234 VAIECSGNTAA---RRLALEAVRPWGRLVLV 261 (339)
T ss_pred EEEECCCCHHH---HHHHHHHhhcCCEEEEE
Confidence 88888775432 33334455666655543
No 451
>PRK06057 short chain dehydrogenase; Provisional
Probab=89.06 E-value=2.1 Score=38.71 Aligned_cols=37 Identities=24% Similarity=0.219 Sum_probs=31.5
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 107 ~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
.++| ++|-|+|. |-+|.++++.+.+. |++|++..++.
T Consensus 4 ~~~~-~~vlItGasggIG~~~a~~l~~~------G~~v~~~~r~~ 41 (255)
T PRK06057 4 RLAG-RVAVITGGGSGIGLATARRLAAE------GATVVVGDIDP 41 (255)
T ss_pred cCCC-CEEEEECCCchHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 4788 99999996 89999999999988 99887766653
No 452
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=88.88 E-value=1.7 Score=42.77 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=49.3
Q ss_pred ccCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCcEEEEEecCC----cccHHHHHHCCceecCCCcCCHHhhhccC
Q 021218 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (316)
Q Consensus 107 ~l~G~kkIGIIG~---G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~----~~s~~~A~~~G~~~~~~t~~~~~e~i~~A 179 (316)
.++| .||++||- +++..|++..+...+ |+++.+...++ ....+.+++.|...+ .+.+++|++++|
T Consensus 156 ~l~g-~kia~vGD~~~~rv~~Sl~~~l~~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~~~a 227 (338)
T PRK08192 156 GIDG-MHIAMVGDLKFGRTVHSLSRLLCMYK-----NVSFTLVSPKELAMPDYVISDIENAGHKIT--ITDQLEGNLDKA 227 (338)
T ss_pred CcCC-CEEEEECcCCCCchHHHHHHHHHHhc-----CCEEEEECCccccCCHHHHHHHHHcCCeEE--EEcCHHHHHccC
Confidence 5899 99999997 588999988766431 77777665442 222344555553211 146899999999
Q ss_pred CEEEEc
Q 021218 180 DLVLLL 185 (316)
Q Consensus 180 DIViLa 185 (316)
|+|..-
T Consensus 228 Dvvyt~ 233 (338)
T PRK08192 228 DILYLT 233 (338)
T ss_pred CEEEEc
Confidence 999884
No 453
>PRK10083 putative oxidoreductase; Provisional
Probab=88.86 E-value=4.5 Score=38.05 Aligned_cols=94 Identities=15% Similarity=0.139 Sum_probs=58.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHh-hhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc----cCCE
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS----GSDL 181 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~-~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e~i~----~ADI 181 (316)
-+| .+|.|+|.|.+|...++.+++ . |.++++..+..+...+.+.+.|...- +....+..+.+. +.|+
T Consensus 159 ~~g-~~vlI~g~g~vG~~~~~~a~~~~------G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~ 231 (339)
T PRK10083 159 TEQ-DVALIYGAGPVGLTIVQVLKGVY------NVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTL 231 (339)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCE
Confidence 467 899999999999999988885 6 77655555555566677777876310 100112334332 3467
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
|+-++... ..+.+....++++..+++.
T Consensus 232 vid~~g~~---~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 232 IIDAACHP---SILEEAVTLASPAARIVLM 258 (339)
T ss_pred EEECCCCH---HHHHHHHHHhhcCCEEEEE
Confidence 77777632 2344555566666666554
No 454
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=88.85 E-value=2.5 Score=42.04 Aligned_cols=128 Identities=16% Similarity=0.222 Sum_probs=78.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCH---------Hhhhc-c
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---------YETIS-G 178 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~---------~e~i~-~ 178 (316)
.| .+++|+|+|-+|-+..++++.. |-..+++.+.++...+.|++.|.++- ..+. .++-. .
T Consensus 185 ~G-~tvaV~GlGgVGlaaI~gA~~a------gA~~IiAvD~~~~Kl~~A~~fGAT~~---vn~~~~~~vv~~i~~~T~gG 254 (366)
T COG1062 185 PG-DTVAVFGLGGVGLAAIQGAKAA------GAGRIIAVDINPEKLELAKKFGATHF---VNPKEVDDVVEAIVELTDGG 254 (366)
T ss_pred CC-CeEEEEeccHhHHHHHHHHHHc------CCceEEEEeCCHHHHHHHHhcCCcee---ecchhhhhHHHHHHHhcCCC
Confidence 46 7999999999999999999998 87778888888888999999998641 1121 22333 6
Q ss_pred CCEEEEcccCchHHHHHHHHHhcC-CCCcEEEE-eCCch--hhhhhccccCCCCCccEE-----EeccCCCchhhHHHHh
Q 021218 179 SDLVLLLISDAAQADNYEKIFSCM-KPNSILGL-SHGFL--LGHLQSMGLDFPKNIGVI-----AVCPKGMGPSVRRLYV 249 (316)
Q Consensus 179 ADIViLavp~~~~~~vi~ei~~~m-k~gaiLid-~aGv~--l~~l~~~~~~~~~~i~vI-----~vhPn~pg~~~r~lf~ 249 (316)
+|..|-++-... +++.-+... |-|..++. +++.. +. +.. ..+-.+..+. .+-|..--+.+-++|.
T Consensus 255 ~d~~~e~~G~~~---~~~~al~~~~~~G~~v~iGv~~~~~~i~-~~~--~~lv~gr~~~Gs~~G~~~p~~diP~lv~~y~ 328 (366)
T COG1062 255 ADYAFECVGNVE---VMRQALEATHRGGTSVIIGVAGAGQEIS-TRP--FQLVTGRVWKGSAFGGARPRSDIPRLVDLYM 328 (366)
T ss_pred CCEEEEccCCHH---HHHHHHHHHhcCCeEEEEecCCCCceee-cCh--HHeeccceEEEEeecCCccccchhHHHHHHH
Confidence 899988887655 444222222 34655442 33221 11 110 0111121111 2455555566778999
Q ss_pred cCc
Q 021218 250 QGK 252 (316)
Q Consensus 250 ~G~ 252 (316)
+||
T Consensus 329 ~Gk 331 (366)
T COG1062 329 AGK 331 (366)
T ss_pred cCC
Confidence 985
No 455
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=88.74 E-value=4.8 Score=38.27 Aligned_cols=93 Identities=19% Similarity=0.290 Sum_probs=59.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHH----hhh--ccCCE
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIY----ETI--SGSDL 181 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~----e~i--~~ADI 181 (316)
+| .+|.|.|.|.+|.+.++.++.. |.++++..+.+++..+.+++.|...- +....+.. +.. +..|+
T Consensus 166 ~g-~~vlI~g~g~iG~~~~~lak~~------G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (351)
T cd08285 166 LG-DTVAVFGIGPVGLMAVAGARLR------GAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDA 238 (351)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcE
Confidence 57 8999999999999999999988 88544555555556777788875210 10001221 122 24799
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
++-++... +.+.+..+.++++..++..
T Consensus 239 vld~~g~~---~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 239 VIIAGGGQ---DTFEQALKVLKPGGTISNV 265 (351)
T ss_pred EEECCCCH---HHHHHHHHHhhcCCEEEEe
Confidence 88877643 3455556667777666544
No 456
>PRK07774 short chain dehydrogenase; Provisional
Probab=88.70 E-value=3.8 Score=36.61 Aligned_cols=38 Identities=26% Similarity=0.236 Sum_probs=32.2
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
..++| +++-|+|. |-+|.++++.|.+. |++|++..|..
T Consensus 2 ~~~~~-k~vlItGasg~iG~~la~~l~~~------g~~vi~~~r~~ 40 (250)
T PRK07774 2 GRFDD-KVAIVTGAAGGIGQAYAEALARE------GASVVVADINA 40 (250)
T ss_pred cccCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 35788 99999996 99999999999998 99887776653
No 457
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.67 E-value=3.7 Score=36.15 Aligned_cols=38 Identities=26% Similarity=0.190 Sum_probs=31.1
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 021218 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (316)
Q Consensus 107 ~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~ 151 (316)
+++. ++|-|+| .|.+|.++++.|.+. |++|++..+++.
T Consensus 3 ~~~~-~~vlItGasg~iG~~l~~~l~~~------g~~v~~~~~~~~ 41 (249)
T PRK12825 3 SLMG-RVALVTGAARGLGRAIALRLARA------GADVVVHYRSDE 41 (249)
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHHHC------CCeEEEEeCCCH
Confidence 4555 8999998 699999999999998 998777666554
No 458
>PRK05717 oxidoreductase; Validated
Probab=88.65 E-value=2 Score=38.92 Aligned_cols=36 Identities=22% Similarity=0.056 Sum_probs=30.7
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecC
Q 021218 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (316)
Q Consensus 107 ~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~ 149 (316)
.|+| |++-|+| .|.+|.++|+.|.+. |.+|++..+.
T Consensus 7 ~~~~-k~vlItG~sg~IG~~~a~~l~~~------g~~v~~~~~~ 43 (255)
T PRK05717 7 GHNG-RVALVTGAARGIGLGIAAWLIAE------GWQVVLADLD 43 (255)
T ss_pred ccCC-CEEEEeCCcchHHHHHHHHHHHc------CCEEEEEcCC
Confidence 5778 9999999 589999999999988 8888776554
No 459
>PRK06114 short chain dehydrogenase; Provisional
Probab=88.62 E-value=4.2 Score=36.78 Aligned_cols=38 Identities=18% Similarity=0.091 Sum_probs=31.9
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 021218 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (316)
Q Consensus 107 ~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~ 151 (316)
.++| +++-|.| .|-+|.++|+.|.+. |.+|++..++.+
T Consensus 5 ~~~~-k~~lVtG~s~gIG~~ia~~l~~~------G~~v~~~~r~~~ 43 (254)
T PRK06114 5 DLDG-QVAFVTGAGSGIGQRIAIGLAQA------GADVALFDLRTD 43 (254)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCcc
Confidence 4788 9999998 668999999999998 998888776543
No 460
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.60 E-value=0.92 Score=40.47 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=32.1
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 021218 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (316)
Q Consensus 107 ~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~ 151 (316)
++++ +++-|+| .|.+|.++++.|.+. |++|++..|+..
T Consensus 2 ~~~~-~~vlItGasg~iG~~l~~~l~~~------G~~V~~~~r~~~ 40 (251)
T PRK07231 2 RLEG-KVAIVTGASSGIGEGIARRFAAE------GARVVVTDRNEE 40 (251)
T ss_pred CcCC-cEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHH
Confidence 4678 9999999 589999999999988 999877777643
No 461
>PLN02827 Alcohol dehydrogenase-like
Probab=88.59 E-value=3.5 Score=40.28 Aligned_cols=92 Identities=17% Similarity=0.232 Sum_probs=55.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCc--CCHHhhhc-----cCC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GSD 180 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~--~~~~e~i~-----~AD 180 (316)
+| .++.|+|.|.+|...++.++.. |..+++..+.++...+.+++.|...- +... .+..+.++ ..|
T Consensus 193 ~g-~~VlV~G~G~vG~~~iqlak~~------G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d 265 (378)
T PLN02827 193 KG-SSVVIFGLGTVGLSVAQGAKLR------GASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGAD 265 (378)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCC
Confidence 58 9999999999999999999988 87545555544555677788886310 0000 01222221 468
Q ss_pred EEEEcccCchHHHHHHHHHhcCCCC-cEEEE
Q 021218 181 LVLLLISDAAQADNYEKIFSCMKPN-SILGL 210 (316)
Q Consensus 181 IViLavp~~~~~~vi~ei~~~mk~g-aiLid 210 (316)
+|+=++-... .+.+.+..++++ -.++.
T Consensus 266 ~vid~~G~~~---~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 266 YSFECVGDTG---IATTALQSCSDGWGLTVT 293 (378)
T ss_pred EEEECCCChH---HHHHHHHhhccCCCEEEE
Confidence 8877766432 233334445555 44443
No 462
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=88.46 E-value=1.2 Score=38.49 Aligned_cols=80 Identities=19% Similarity=0.169 Sum_probs=47.8
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccCchHH
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA 192 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp~~~~~ 192 (316)
++.|+|.|..|..++..|++. |++++-..+.+.... ...-.|+..- +...++.+..++.+.+++++++....
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~------g~~vvgfid~~~~~~-~~~i~g~pvl-g~~~~l~~~~~~~~~~iiai~~~~~~ 72 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS------GWEIVGFLDDNPALQ-GTSVDGLPVL-GGDEDLLRYPPDEVDLVVAIGDNKLR 72 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCEEEEEEcCCcccc-CcccCCccEE-CCHHHHhhhcccccEEEEEcCCHHHH
Confidence 367999999999999999988 998765555543211 1112344320 01112333445568899999755544
Q ss_pred -HHHHHHHh
Q 021218 193 -DNYEKIFS 200 (316)
Q Consensus 193 -~vi~ei~~ 200 (316)
++++.+.+
T Consensus 73 ~~i~~~l~~ 81 (201)
T TIGR03570 73 RRLFEKLKA 81 (201)
T ss_pred HHHHHHHHh
Confidence 35555443
No 463
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=88.43 E-value=1.7 Score=41.82 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=29.5
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEe
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~ 147 (316)
++-|.. .+|.|||+|-+|..+|++|... |. ++.+.+
T Consensus 14 q~kL~~-s~VLIvG~gGLG~EiaKnLala------GVg~itI~D 50 (286)
T cd01491 14 MKKLQK-SNVLISGLGGLGVEIAKNLILA------GVKSVTLHD 50 (286)
T ss_pred HHHHhc-CcEEEEcCCHHHHHHHHHHHHc------CCCeEEEEc
Confidence 456677 8999999999999999999988 76 344444
No 464
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=88.41 E-value=2 Score=42.30 Aligned_cols=72 Identities=14% Similarity=0.021 Sum_probs=48.2
Q ss_pred ccc-CCCCEEEEEccc-------chHHHHHHHHHhhhhhhcCCcEEEEEec-CCc----ccHH----HHHHCCceecCCC
Q 021218 106 DAF-NGINQIGVIGWG-------SQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGS----RSFA----EARAAGFTEENGT 168 (316)
Q Consensus 106 ~~l-~G~kkIGIIG~G-------~mG~AlA~~Lr~~~~~~g~G~~Vivg~r-~~~----~s~~----~A~~~G~~~~~~t 168 (316)
..+ +| .||+|++.| ++..|++..+... |+++.+... +.- ...+ .+.+.|...+ .
T Consensus 164 g~~~~g-~ki~i~~~gd~~~~~~~v~~S~~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~--~ 234 (335)
T PRK04523 164 GTTLRG-KKYVLTWTYHPKPLNTAVANSALLIATRL------GMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLT--V 234 (335)
T ss_pred CCccCC-CEEEEEEeccCcccccHHHHHHHHHHHHc------CCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEE--E
Confidence 347 78 899776543 6788988888888 998877765 321 1122 2344553211 1
Q ss_pred cCCHHhhhccCCEEEEcc
Q 021218 169 LGDIYETISGSDLVLLLI 186 (316)
Q Consensus 169 ~~~~~e~i~~ADIViLav 186 (316)
..+++|+++++|+|..-.
T Consensus 235 ~~d~~ea~~~aDvvy~~~ 252 (335)
T PRK04523 235 SHDIDSAYAGADVVYAKS 252 (335)
T ss_pred EcCHHHHhCCCCEEEece
Confidence 468999999999998855
No 465
>PRK07825 short chain dehydrogenase; Provisional
Probab=88.39 E-value=2.2 Score=39.01 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=30.9
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 107 ~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
.++| +++-|.|. |-+|.++++.|.+. |.+|++..|+.
T Consensus 2 ~~~~-~~ilVtGasggiG~~la~~l~~~------G~~v~~~~r~~ 39 (273)
T PRK07825 2 DLRG-KVVAITGGARGIGLATARALAAL------GARVAIGDLDE 39 (273)
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEECCH
Confidence 4678 89999995 89999999999998 99887776653
No 466
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.38 E-value=1.9 Score=43.13 Aligned_cols=68 Identities=28% Similarity=0.276 Sum_probs=43.9
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHH----HHHHCCceecCCCcCC---HHhhhccCCEEEEc
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----EARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~----~A~~~G~~~~~~t~~~---~~e~i~~ADIViLa 185 (316)
+|.|||.|..|.+.|+.|.+. |++|.+.+++...... .-++.|+...-+...+ ..+.+.+.|+|+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s 75 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ------GWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVS 75 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC------CCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEEC
Confidence 689999999999999999999 9988777655432221 2234565431111111 11357789998884
Q ss_pred c
Q 021218 186 I 186 (316)
Q Consensus 186 v 186 (316)
.
T Consensus 76 ~ 76 (459)
T PRK02705 76 P 76 (459)
T ss_pred C
Confidence 3
No 467
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=88.31 E-value=4.6 Score=39.45 Aligned_cols=97 Identities=15% Similarity=0.232 Sum_probs=60.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHC-CceecCCCcC-CHHhhh----c--cCC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLG-DIYETI----S--GSD 180 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~t~~-~~~e~i----~--~AD 180 (316)
+| .+|.|+|.|.+|...++.++.. |...+++.+.++...+.+++. +...-+.... +..+.+ . ..|
T Consensus 184 ~g-~~VlV~g~G~vG~~~~~la~~~------g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D 256 (386)
T cd08283 184 PG-DTVAVWGCGPVGLFAARSAKLL------GAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPD 256 (386)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCC
Confidence 67 8999999999999999999988 874344544445556666666 3211010111 122222 1 479
Q ss_pred EEEEcccCc------------------hHHHHHHHHHhcCCCCcEEEEeC
Q 021218 181 LVLLLISDA------------------AQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 181 IViLavp~~------------------~~~~vi~ei~~~mk~gaiLid~a 212 (316)
+|+-++... .....+++....++++..+++.+
T Consensus 257 ~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 257 VCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred EEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 999887422 22346777778888887776554
No 468
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=88.31 E-value=1.6 Score=39.22 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=31.9
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
..++| +++-|.|. |.+|.++++.|.+. |.+|++..|..
T Consensus 3 ~~~~~-~~vlItGasg~iG~~la~~l~~~------G~~v~~~~r~~ 41 (262)
T PRK13394 3 SNLNG-KTAVVTGAASGIGKEIALELARA------GAAVAIADLNQ 41 (262)
T ss_pred ccCCC-CEEEEECCCChHHHHHHHHHHHC------CCeEEEEeCCh
Confidence 34678 99999995 99999999999998 99887776654
No 469
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=88.30 E-value=0.96 Score=47.54 Aligned_cols=71 Identities=25% Similarity=0.258 Sum_probs=45.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhhccCCEEE
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVL 183 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~---~~e~i~~ADIVi 183 (316)
.... |+|||||.|..|.-+++.+++. |++|++.+.... ............ ....| +.++++++|+|.
T Consensus 19 ~~~~-k~IgIIGgGqlg~mla~aA~~l------G~~Vi~ld~~~~-apa~~~AD~~~v--~~~~D~~~l~~~a~~~dvIt 88 (577)
T PLN02948 19 GVSE-TVVGVLGGGQLGRMLCQAASQM------GIKVKVLDPLED-CPASSVAARHVV--GSFDDRAAVREFAKRCDVLT 88 (577)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCC-CchhhhCceeee--CCCCCHHHHHHHHHHCCEEE
Confidence 3556 9999999999999999999998 998777655432 111111111111 01234 445567899887
Q ss_pred Eccc
Q 021218 184 LLIS 187 (316)
Q Consensus 184 Lavp 187 (316)
....
T Consensus 89 ~e~e 92 (577)
T PLN02948 89 VEIE 92 (577)
T ss_pred EecC
Confidence 6544
No 470
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=88.28 E-value=2.7 Score=39.27 Aligned_cols=93 Identities=20% Similarity=0.171 Sum_probs=56.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcE-EEEEecCCcccHHHHHHCCceec-CCCcCCHHh----hhccCCE
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TISGSDL 181 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~-Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~~~e----~i~~ADI 181 (316)
.+| .+|.|+|.|.+|.++++.++.. |.+ +++..+ +++..+.+.+.|.... +....+..+ .-+..|+
T Consensus 158 ~~g-~~vlI~g~g~vg~~~~~la~~~------G~~~v~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~ 229 (334)
T cd08234 158 KPG-DSVLVFGAGPIGLLLAQLLKLN------GASRVTVAEP-NEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDV 229 (334)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEECC-CHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcE
Confidence 367 8999999999999999999998 886 444443 3444555566664210 000011110 1246899
Q ss_pred EEEcccCchHHHHHHHHHhcCCCCcEEEEe
Q 021218 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 182 ViLavp~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
++-++... ..+.+....++++..+++.
T Consensus 230 v~~~~~~~---~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 230 VIEATGVP---KTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred EEECCCCh---HHHHHHHHHHhcCCEEEEE
Confidence 99887632 2444555566666665544
No 471
>PLN02740 Alcohol dehydrogenase-like
Probab=88.27 E-value=3.2 Score=40.44 Aligned_cols=46 Identities=20% Similarity=0.357 Sum_probs=36.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCc
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF 162 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~ 162 (316)
+| .++.|+|.|.+|...++.++.. |. +|+.. +.++...+.+++.|.
T Consensus 198 ~g-~~VlV~G~G~vG~~a~q~ak~~------G~~~Vi~~-~~~~~r~~~a~~~Ga 244 (381)
T PLN02740 198 AG-SSVAIFGLGAVGLAVAEGARAR------GASKIIGV-DINPEKFEKGKEMGI 244 (381)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCCcEEEE-cCChHHHHHHHHcCC
Confidence 57 8999999999999999999998 87 45544 444556778888875
No 472
>PRK07060 short chain dehydrogenase; Provisional
Probab=88.26 E-value=2.1 Score=38.04 Aligned_cols=74 Identities=20% Similarity=0.150 Sum_probs=46.0
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCH---Hhhhc---cC
Q 021218 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YETIS---GS 179 (316)
Q Consensus 107 ~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~---~e~i~---~A 179 (316)
.++| +++.|.|. |.+|..+++.+.+. |.+|++..|+.++..+.....+.........+. .++++ ..
T Consensus 6 ~~~~-~~~lItGa~g~iG~~~a~~l~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 78 (245)
T PRK07060 6 DFSG-KSVLVTGASSGIGRACAVALAQR------GARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAF 78 (245)
T ss_pred ccCC-CEEEEeCCcchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCC
Confidence 5788 99999997 79999999999998 988877766543332333332321100012232 23332 46
Q ss_pred CEEEEccc
Q 021218 180 DLVLLLIS 187 (316)
Q Consensus 180 DIViLavp 187 (316)
|+||-+..
T Consensus 79 d~vi~~ag 86 (245)
T PRK07060 79 DGLVNCAG 86 (245)
T ss_pred CEEEECCC
Confidence 98887663
No 473
>PRK12828 short chain dehydrogenase; Provisional
Probab=88.25 E-value=4.5 Score=35.50 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=31.3
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 107 ~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
.++| +++-|+| .|.+|.++++.|.+. |.+|++..|+.
T Consensus 4 ~~~~-k~vlItGatg~iG~~la~~l~~~------G~~v~~~~r~~ 41 (239)
T PRK12828 4 SLQG-KVVAITGGFGGLGRATAAWLAAR------GARVALIGRGA 41 (239)
T ss_pred CCCC-CEEEEECCCCcHhHHHHHHHHHC------CCeEEEEeCCh
Confidence 4678 9999999 599999999999988 98887777654
No 474
>PRK09242 tropinone reductase; Provisional
Probab=88.11 E-value=1.6 Score=39.57 Aligned_cols=37 Identities=19% Similarity=0.167 Sum_probs=31.4
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 107 ~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
.++| |++-|+| .|.||.++++.|.+. |.+|++..|+.
T Consensus 6 ~~~~-k~~lItGa~~gIG~~~a~~l~~~------G~~v~~~~r~~ 43 (257)
T PRK09242 6 RLDG-QTALITGASKGIGLAIAREFLGL------GADVLIVARDA 43 (257)
T ss_pred ccCC-CEEEEeCCCchHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 4678 9999999 479999999999998 99887777654
No 475
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=88.11 E-value=1.5 Score=39.57 Aligned_cols=38 Identities=24% Similarity=0.167 Sum_probs=32.1
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 106 ~~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
.+|+| |++-|.| .|.+|.++++.|.+. |++|++..|+.
T Consensus 6 ~~~~~-k~vlItGa~g~iG~~ia~~l~~~------G~~V~~~~r~~ 44 (255)
T PRK07523 6 FDLTG-RRALVTGSSQGIGYALAEGLAQA------GAEVILNGRDP 44 (255)
T ss_pred cCCCC-CEEEEECCcchHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 35789 9999999 589999999999988 99887776653
No 476
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=88.10 E-value=2 Score=43.80 Aligned_cols=71 Identities=15% Similarity=0.148 Sum_probs=49.4
Q ss_pred cCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCcEEEEEecCCc----ccHHHHHHCCceecCCCcCCHHhhhccCC
Q 021218 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISGSD 180 (316)
Q Consensus 108 l~G~kkIGIIG~---G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~----~s~~~A~~~G~~~~~~t~~~~~e~i~~AD 180 (316)
|+| +||++||- +++..|++..+...+ |+++.+...+.- ...+.+.+.|...+ ...+++|++++||
T Consensus 239 l~G-~kIa~vGD~~~~rv~~Sl~~~la~~~-----G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~eav~~AD 310 (429)
T PRK11891 239 VDG-AHIALVGDLKYGRTVHSLVKLLALYR-----GLKFTLVSPPTLEMPAYIVEQISRNGHVIE--QTDDLAAGLRGAD 310 (429)
T ss_pred cCC-CEEEEECcCCCChHHHHHHHHHHHhc-----CCEEEEECCCccccCHHHHHHHHhcCCeEE--EEcCHHHHhCCCC
Confidence 789 99999998 489999999876531 788777654331 22344445563211 1468999999999
Q ss_pred EEEEcc
Q 021218 181 LVLLLI 186 (316)
Q Consensus 181 IViLav 186 (316)
+|....
T Consensus 311 VVYt~~ 316 (429)
T PRK11891 311 VVYATR 316 (429)
T ss_pred EEEEcC
Confidence 999844
No 477
>PRK12937 short chain dehydrogenase; Provisional
Probab=88.09 E-value=3.7 Score=36.45 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=31.0
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 107 ~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
+++| +++-|+| .|-+|.++|+.|.+. |+++++..+++
T Consensus 2 ~~~~-~~vlItG~~~~iG~~la~~l~~~------g~~v~~~~~~~ 39 (245)
T PRK12937 2 TLSN-KVAIVTGASRGIGAAIARRLAAD------GFAVAVNYAGS 39 (245)
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEecCCC
Confidence 4678 9999999 589999999999998 98877666554
No 478
>PRK07478 short chain dehydrogenase; Provisional
Probab=88.08 E-value=1.6 Score=39.36 Aligned_cols=38 Identities=26% Similarity=0.283 Sum_probs=31.6
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 106 ~~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
..++| +++-|.| .|-+|.++++.|.+. |.+|++..|+.
T Consensus 2 ~~~~~-k~~lItGas~giG~~ia~~l~~~------G~~v~~~~r~~ 40 (254)
T PRK07478 2 MRLNG-KVAIITGASSGIGRAAAKLFARE------GAKVVVGARRQ 40 (254)
T ss_pred CCCCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 35678 9999999 478999999999998 99887776653
No 479
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=87.99 E-value=3.6 Score=39.38 Aligned_cols=46 Identities=20% Similarity=0.170 Sum_probs=36.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCc
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~ 162 (316)
+| .++.|+|.|.+|...++.++.. |.+|++..+ +++..+.+++.|.
T Consensus 166 ~g-~~VlV~G~G~vG~~a~~~a~~~------G~~vi~~~~-~~~~~~~~~~~Ga 211 (349)
T TIGR03201 166 KG-DLVIVIGAGGVGGYMVQTAKAM------GAAVVAIDI-DPEKLEMMKGFGA 211 (349)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcC-CHHHHHHHHHhCC
Confidence 57 8999999999999999999998 887655444 4455667777775
No 480
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=87.95 E-value=1.7 Score=42.14 Aligned_cols=71 Identities=17% Similarity=0.090 Sum_probs=48.1
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhhhhhhcCCcEEEEEecCCc----ccHH----HHHHCCceecCCCcCCHHhhh
Q 021218 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFA----EARAAGFTEENGTLGDIYETI 176 (316)
Q Consensus 106 ~~l~G~kkIGIIG~G-~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~----~s~~----~A~~~G~~~~~~t~~~~~e~i 176 (316)
..++| .||++||-+ ++..|++..+... |+++.+...+.- ...+ .+++.|.... ...+ .+++
T Consensus 143 g~l~g-~kva~vGD~~~v~~S~~~~~~~~------g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~--~~~d-~~a~ 212 (302)
T PRK14805 143 GDVSK-VKLAYVGDGNNVTHSLMYGAAIL------GATMTVICPPGHFPDGQIVAEAQELAAKSGGKLV--LTSD-IEAI 212 (302)
T ss_pred CCcCC-cEEEEEcCCCccHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEE--EEcC-HHHH
Confidence 46888 999999975 7788999998888 998877754431 1111 2344554311 1235 4679
Q ss_pred ccCCEEEEcc
Q 021218 177 SGSDLVLLLI 186 (316)
Q Consensus 177 ~~ADIViLav 186 (316)
+++|+|..-+
T Consensus 213 ~~aDvvy~~~ 222 (302)
T PRK14805 213 EGHDAIYTDT 222 (302)
T ss_pred CCCCEEEeec
Confidence 9999999855
No 481
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=87.90 E-value=3.4 Score=39.19 Aligned_cols=94 Identities=20% Similarity=0.231 Sum_probs=59.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCC-HHhhhccCCEEEEc
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD-IYETISGSDLVLLL 185 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~t~~~-~~e~i~~ADIViLa 185 (316)
-+| .++.|.|.|.+|.+.++.++.. |.++++..+. ++..+.+.+.|...- +....+ ..+.-...|+|+-+
T Consensus 168 ~~g-~~vlV~g~g~vG~~~~~~a~~~------G~~v~~~~~~-~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~ 239 (337)
T cd05283 168 GPG-KRVGVVGIGGLGHLAVKFAKAL------GAEVTAFSRS-PSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDT 239 (337)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEEC
Confidence 357 8999999999999999999998 8877665554 344566666664210 000001 11223567999988
Q ss_pred ccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 186 vp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
++... .+.+..+.++++..+++.+
T Consensus 240 ~g~~~---~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 240 VSASH---DLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred CCCcc---hHHHHHHHhcCCCEEEEEe
Confidence 87652 2445556666666655543
No 482
>PRK05867 short chain dehydrogenase; Provisional
Probab=87.90 E-value=1.4 Score=39.82 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=32.1
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
..++| +++-|.|. |-||.++++.|.+. |.+|++..|+.
T Consensus 5 ~~~~~-k~vlVtGas~gIG~~ia~~l~~~------G~~V~~~~r~~ 43 (253)
T PRK05867 5 FDLHG-KRALITGASTGIGKRVALAYVEA------GAQVAIAARHL 43 (253)
T ss_pred ccCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEcCCH
Confidence 35789 99999996 79999999999998 99887776653
No 483
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=87.90 E-value=4.7 Score=38.93 Aligned_cols=86 Identities=20% Similarity=0.198 Sum_probs=52.6
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceec-CCCc--CCHHhhh-----cc
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETI-----SG 178 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~t~--~~~~e~i-----~~ 178 (316)
.+| .++.|+|.|.+|...++.++.. |. +|++.. ..+...+.+++.|...- +... .+..+.+ ..
T Consensus 183 ~~g-~~vlV~G~g~vG~~~~~~a~~~------G~~~Vi~~~-~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g 254 (365)
T cd08277 183 EPG-STVAVFGLGAVGLSAIMGAKIA------GASRIIGVD-INEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGG 254 (365)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEe-CCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCC
Confidence 457 8999999999999999999998 88 454444 44455667777775210 0000 0112212 24
Q ss_pred CCEEEEcccCchHHHHHHHHHhcCCC
Q 021218 179 SDLVLLLISDAAQADNYEKIFSCMKP 204 (316)
Q Consensus 179 ADIViLavp~~~~~~vi~ei~~~mk~ 204 (316)
.|+|+-++... ..+.+....+++
T Consensus 255 ~d~vid~~g~~---~~~~~~~~~l~~ 277 (365)
T cd08277 255 VDYSFECTGNA---DLMNEALESTKL 277 (365)
T ss_pred CCEEEECCCCh---HHHHHHHHhccc
Confidence 78888777643 234455556654
No 484
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=87.74 E-value=2.1 Score=43.30 Aligned_cols=74 Identities=24% Similarity=0.230 Sum_probs=50.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--------------------ccHHHHHHCCceecC
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEEN 166 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~ 166 (316)
.-.| ++|.|||.|..|.+.|..|++. |++|.+.++.+. ...+...+.|+...-
T Consensus 140 ~~~~-~~VvIIGaGpAGl~aA~~l~~~------G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~ 212 (471)
T PRK12810 140 KRTG-KKVAVVGSGPAGLAAADQLARA------GHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRT 212 (471)
T ss_pred CCCC-CEEEEECcCHHHHHHHHHHHhC------CCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEe
Confidence 3467 8999999999999999999998 888877765421 112345666754321
Q ss_pred CCc----CCHHhhhccCCEEEEccc
Q 021218 167 GTL----GDIYETISGSDLVLLLIS 187 (316)
Q Consensus 167 ~t~----~~~~e~i~~ADIViLavp 187 (316)
++. .+.++.....|.|++++-
T Consensus 213 ~~~v~~~~~~~~~~~~~d~vvlAtG 237 (471)
T PRK12810 213 NVEVGKDITAEELLAEYDAVFLGTG 237 (471)
T ss_pred CCEECCcCCHHHHHhhCCEEEEecC
Confidence 111 123444567999999973
No 485
>PRK06138 short chain dehydrogenase; Provisional
Probab=87.73 E-value=1.8 Score=38.62 Aligned_cols=37 Identities=24% Similarity=0.186 Sum_probs=31.2
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 107 ~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
+|+| +++-|+| .|-+|..+++.|.+. |.+|++..|+.
T Consensus 2 ~~~~-k~~lItG~sg~iG~~la~~l~~~------G~~v~~~~r~~ 39 (252)
T PRK06138 2 RLAG-RVAIVTGAGSGIGRATAKLFARE------GARVVVADRDA 39 (252)
T ss_pred CCCC-cEEEEeCCCchHHHHHHHHHHHC------CCeEEEecCCH
Confidence 4788 9999999 589999999999988 98877776654
No 486
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=87.67 E-value=2.3 Score=41.26 Aligned_cols=90 Identities=9% Similarity=0.168 Sum_probs=66.5
Q ss_pred CEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhcc--CCEEEEcccC
Q 021218 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (316)
Q Consensus 112 kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~--ADIViLavp~ 188 (316)
.+|.|.| .|.-|...-+.+++. |-+++.|...+.. ..+-.|+.. +.+..|+-.. .|+.++++|.
T Consensus 13 ~~v~~~gi~~~~~~~~~~~~~~y------gt~~~~gV~p~~~---~~~i~G~~~----y~sv~dlp~~~~~DlAvI~vPa 79 (300)
T PLN00125 13 TRVICQGITGKNGTFHTEQAIEY------GTKMVGGVTPKKG---GTEHLGLPV----FNTVAEAKAETKANASVIYVPP 79 (300)
T ss_pred CeEEEecCCCHHHHHHHHHHHHh------CCcEEEEECCCCC---CceEcCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 6888889 889999999999998 8888888766520 011245553 5677777654 7999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEeCCch
Q 021218 189 AAQADNYEKIFSCMKPNSILGLSHGFL 215 (316)
Q Consensus 189 ~~~~~vi~ei~~~mk~gaiLid~aGv~ 215 (316)
....+.+++..+. .-..+++.++||.
T Consensus 80 ~~v~~al~e~~~~-Gvk~~vIisaGf~ 105 (300)
T PLN00125 80 PFAAAAILEAMEA-ELDLVVCITEGIP 105 (300)
T ss_pred HHHHHHHHHHHHc-CCCEEEEECCCCC
Confidence 9999988876552 2234677889986
No 487
>PRK13984 putative oxidoreductase; Provisional
Probab=87.61 E-value=2 Score=44.79 Aligned_cols=72 Identities=21% Similarity=0.178 Sum_probs=49.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc--------------------ccHHHHHHCCceecCCC
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~t 168 (316)
+| ++|.|||.|..|.+.|..|++. |++|.+..+... ...+..++.|+...-++
T Consensus 282 ~~-~~v~IIGaG~aGl~aA~~L~~~------G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~ 354 (604)
T PRK13984 282 KN-KKVAIVGSGPAGLSAAYFLATM------GYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNT 354 (604)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCC
Confidence 56 8999999999999999999998 988877755421 12344566675421111
Q ss_pred -c---CCHHhhhccCCEEEEccc
Q 021218 169 -L---GDIYETISGSDLVLLLIS 187 (316)
Q Consensus 169 -~---~~~~e~i~~ADIViLavp 187 (316)
. .+.++.-.+.|.||+++-
T Consensus 355 ~v~~~~~~~~~~~~yD~vilAtG 377 (604)
T PRK13984 355 RVGKDIPLEELREKHDAVFLSTG 377 (604)
T ss_pred EeCCcCCHHHHHhcCCEEEEEcC
Confidence 1 133445557999999986
No 488
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=87.59 E-value=7.2 Score=36.66 Aligned_cols=95 Identities=20% Similarity=0.226 Sum_probs=58.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHh----hh--ccC
Q 021218 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TI--SGS 179 (316)
Q Consensus 107 ~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e----~i--~~A 179 (316)
..+| .+|.|.|.|.+|.++++.++.. |. ++++. ...+...+.+.+.|...-+....+..+ .. +..
T Consensus 165 ~~~~-~~vlI~g~g~vg~~~~~~a~~~------g~~~v~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 236 (344)
T cd08284 165 VRPG-DTVAVIGCGPVGLCAVLSAQVL------GAARVFAV-DPVPERLERAAALGAEPINFEDAEPVERVREATEGRGA 236 (344)
T ss_pred CccC-CEEEEECCcHHHHHHHHHHHHc------CCceEEEE-cCCHHHHHHHHHhCCeEEecCCcCHHHHHHHHhCCCCC
Confidence 3467 8999999999999999999998 86 55544 444455566677774210100112222 22 347
Q ss_pred CEEEEcccCchHHHHHHHHHhcCCCCcEEEEeC
Q 021218 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (316)
Q Consensus 180 DIViLavp~~~~~~vi~ei~~~mk~gaiLid~a 212 (316)
|+++-++... ..+.+....++++..++..+
T Consensus 237 dvvid~~~~~---~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 237 DVVLEAVGGA---AALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred CEEEECCCCH---HHHHHHHHhcccCCEEEEEC
Confidence 8888776643 23445555666666666543
No 489
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.55 E-value=1.8 Score=38.54 Aligned_cols=37 Identities=16% Similarity=0.089 Sum_probs=31.2
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 107 ~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
+++| +++.|+|. |-+|.++++.+.+. |..|++..++.
T Consensus 2 ~~~~-~~~lItG~~g~iG~~~a~~l~~~------G~~vi~~~r~~ 39 (253)
T PRK08217 2 DLKD-KVIVITGGAQGLGRAMAEYLAQK------GAKLALIDLNQ 39 (253)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 3678 99999997 99999999999998 88877666553
No 490
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=87.54 E-value=2.1 Score=45.40 Aligned_cols=73 Identities=25% Similarity=0.206 Sum_probs=49.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcc--------------------cHHHHHHCCceecCC
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--------------------SFAEARAAGFTEENG 167 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~--------------------s~~~A~~~G~~~~~~ 167 (316)
-.| ++|.|||.|..|.+.|..|+.. |++|.+.++.... ..+...+.|+...-+
T Consensus 191 ~~~-k~VaIIGaGpAGl~aA~~La~~------G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~ 263 (652)
T PRK12814 191 KSG-KKVAIIGAGPAGLTAAYYLLRK------GHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFN 263 (652)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 357 9999999999999999999998 9888777654221 134445667543211
Q ss_pred Cc----CCHHhhhccCCEEEEccc
Q 021218 168 TL----GDIYETISGSDLVLLLIS 187 (316)
Q Consensus 168 t~----~~~~e~i~~ADIViLavp 187 (316)
+. .+.++...+.|.|++++-
T Consensus 264 ~~v~~dv~~~~~~~~~DaVilAtG 287 (652)
T PRK12814 264 TVFGRDITLEELQKEFDAVLLAVG 287 (652)
T ss_pred CcccCccCHHHHHhhcCEEEEEcC
Confidence 11 123444456999999874
No 491
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=87.52 E-value=2.2 Score=39.84 Aligned_cols=72 Identities=21% Similarity=0.194 Sum_probs=45.6
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccH--HHHHH-CC------ceecCCC-cCCHHhhhc
Q 021218 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF--AEARA-AG------FTEENGT-LGDIYETIS 177 (316)
Q Consensus 109 ~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~--~~A~~-~G------~~~~~~t-~~~~~e~i~ 177 (316)
+| ++|-|.| .|-+|..+++.|.+. |++|++..++..... ..... .+ +...|-. ....+++++
T Consensus 3 ~~-~~ilVtGatGfIG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (322)
T PLN02662 3 EG-KVVCVTGASGYIASWLVKLLLQR------GYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVD 75 (322)
T ss_pred CC-CEEEEECChHHHHHHHHHHHHHC------CCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHc
Confidence 36 8999999 799999999999998 998876666543211 11111 11 1111100 123567788
Q ss_pred cCCEEEEccc
Q 021218 178 GSDLVLLLIS 187 (316)
Q Consensus 178 ~ADIViLavp 187 (316)
++|.||-+..
T Consensus 76 ~~d~Vih~A~ 85 (322)
T PLN02662 76 GCEGVFHTAS 85 (322)
T ss_pred CCCEEEEeCC
Confidence 9998887764
No 492
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=87.40 E-value=1 Score=42.73 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=30.2
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEE
Q 021218 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (316)
Q Consensus 105 ~~~l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vi 144 (316)
-.+|+| +++.|.|+|++|...|+.|.+. |.+|+
T Consensus 33 ~~~l~g-~~vaIqGfGnVG~~~a~~L~e~------Gakvv 65 (254)
T cd05313 33 NETLKG-KRVAISGSGNVAQYAAEKLLEL------GAKVV 65 (254)
T ss_pred CCCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEE
Confidence 367899 9999999999999999999998 98876
No 493
>PLN02214 cinnamoyl-CoA reductase
Probab=87.33 E-value=2.3 Score=40.99 Aligned_cols=76 Identities=18% Similarity=0.156 Sum_probs=48.4
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHH-H--HC---C--ceecCC-CcCCHHhh
Q 021218 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-R--AA---G--FTEENG-TLGDIYET 175 (316)
Q Consensus 106 ~~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A-~--~~---G--~~~~~~-t~~~~~e~ 175 (316)
..+++ |+|.|.|. |-+|..+++.|.+. |++|+...|..+...... . .. . +...|- ...+..++
T Consensus 6 ~~~~~-~~vlVTGatGfIG~~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 78 (342)
T PLN02214 6 ASPAG-KTVCVTGAGGYIASWIVKILLER------GYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAA 78 (342)
T ss_pred ccCCC-CEEEEECCCcHHHHHHHHHHHHC------cCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHH
Confidence 45678 99999996 99999999999998 998877666533211110 1 11 1 111110 11235667
Q ss_pred hccCCEEEEcccC
Q 021218 176 ISGSDLVLLLISD 188 (316)
Q Consensus 176 i~~ADIViLavp~ 188 (316)
++.+|+||-+..+
T Consensus 79 ~~~~d~Vih~A~~ 91 (342)
T PLN02214 79 IDGCDGVFHTASP 91 (342)
T ss_pred HhcCCEEEEecCC
Confidence 8899998887744
No 494
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=87.28 E-value=4.8 Score=39.05 Aligned_cols=46 Identities=22% Similarity=0.297 Sum_probs=36.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCc
Q 021218 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF 162 (316)
Q Consensus 109 ~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~ 162 (316)
+| .++.|+|.|.+|...++.++.. |. +|+.. +.+++..+.+++.|.
T Consensus 185 ~g-~~VlV~G~G~iG~~a~q~Ak~~------G~~~Vi~~-~~~~~~~~~a~~~Ga 231 (368)
T TIGR02818 185 EG-DTVAVFGLGGIGLSVIQGARMA------KASRIIAI-DINPAKFELAKKLGA 231 (368)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEE-cCCHHHHHHHHHhCC
Confidence 47 8999999999999999999998 87 55544 444556677788775
No 495
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=87.16 E-value=5.2 Score=36.28 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=32.1
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCCc
Q 021218 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (316)
Q Consensus 106 ~~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~ 151 (316)
.+++| +++-|+| .|-+|.++++.|.+. |.+|++..+++.
T Consensus 3 ~~~~~-k~~lItGa~~gIG~~ia~~l~~~------G~~vvi~~~~~~ 42 (261)
T PRK08936 3 SDLEG-KVVVITGGSTGLGRAMAVRFGKE------KAKVVINYRSDE 42 (261)
T ss_pred cCCCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCCH
Confidence 35789 9999999 678999999999998 988777666543
No 496
>PRK06197 short chain dehydrogenase; Provisional
Probab=87.08 E-value=6.6 Score=36.79 Aligned_cols=47 Identities=17% Similarity=-0.016 Sum_probs=36.4
Q ss_pred cCCccccccccccCCCCEEEEEc-ccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 96 GGRDLFNLLPDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 96 ~G~w~F~~~~~~l~G~kkIGIIG-~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
.+.|...- +.+++| +++-|.| .|-||.++|+.|.+. |.+|++..|+.
T Consensus 3 ~~~~~~~~-~~~~~~-k~vlItGas~gIG~~~a~~l~~~------G~~vi~~~r~~ 50 (306)
T PRK06197 3 MTKWTAAD-IPDQSG-RVAVVTGANTGLGYETAAALAAK------GAHVVLAVRNL 50 (306)
T ss_pred CCCCCccc-cccCCC-CEEEEcCCCCcHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 34454432 367899 9999999 589999999999998 98887776653
No 497
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=87.00 E-value=1.5 Score=42.61 Aligned_cols=67 Identities=9% Similarity=0.135 Sum_probs=47.2
Q ss_pred cccCCCCEEEEEcc---cchHHHHHHHHHhhhhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCE
Q 021218 106 DAFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDL 181 (316)
Q Consensus 106 ~~l~G~kkIGIIG~---G~mG~AlA~~Lr~~~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADI 181 (316)
..++| .+|++||- +++..|++..+... |+ ++.+...+.-.. +......+.. ..+++++++++|+
T Consensus 153 g~l~g-~~va~vGD~~~~rv~~Sl~~~~a~~------g~~~v~~~~P~~~~p-~~~~~~~~~~----~~d~~ea~~~aDv 220 (310)
T PRK13814 153 PHWNK-LCVTIIGDIRHSRVANSLMDGLVTM------GVPEIRLVGPSSLLP-DKVGNDSIKK----FTELKPSLLNSDV 220 (310)
T ss_pred CCcCC-cEEEEECCCCCCcHHHHHHHHHHHc------CCCEEEEeCCcccCc-CccccceEEE----EcCHHHHhCCCCE
Confidence 34788 99999997 69999999999998 98 777665442110 0000012332 4688999999999
Q ss_pred EEE
Q 021218 182 VLL 184 (316)
Q Consensus 182 ViL 184 (316)
|..
T Consensus 221 vy~ 223 (310)
T PRK13814 221 IVT 223 (310)
T ss_pred EEE
Confidence 987
No 498
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=86.90 E-value=4.3 Score=37.91 Aligned_cols=90 Identities=17% Similarity=0.097 Sum_probs=58.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021218 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (316)
Q Consensus 108 l~G~kkIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~~~t~~~~~e~i~~ADIViLavp 187 (316)
.+| .++.|.|.|.+|.++++.++.. |.+|++..+.. ...+.+++.|.... .......-+..|+++.+.+
T Consensus 166 ~~~-~~vlV~g~g~vg~~~~~la~~~------g~~v~~~~~~~-~~~~~~~~~g~~~~---~~~~~~~~~~vD~vi~~~~ 234 (329)
T cd08298 166 KPG-QRLGLYGFGASAHLALQIARYQ------GAEVFAFTRSG-EHQELARELGADWA---GDSDDLPPEPLDAAIIFAP 234 (329)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHC------CCeEEEEcCCh-HHHHHHHHhCCcEE---eccCccCCCcccEEEEcCC
Confidence 357 8999999999999999999988 88876665543 44566677775310 1111111235788888765
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEe
Q 021218 188 DAAQADNYEKIFSCMKPNSILGLS 211 (316)
Q Consensus 188 ~~~~~~vi~ei~~~mk~gaiLid~ 211 (316)
.. ..+++....++++..++..
T Consensus 235 ~~---~~~~~~~~~l~~~G~~v~~ 255 (329)
T cd08298 235 VG---ALVPAALRAVKKGGRVVLA 255 (329)
T ss_pred cH---HHHHHHHHHhhcCCEEEEE
Confidence 43 3566667777777666543
No 499
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=86.90 E-value=1.5 Score=33.16 Aligned_cols=32 Identities=28% Similarity=0.235 Sum_probs=28.3
Q ss_pred EEEEEcccchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 113 kIGIIG~G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
+|.|||.|.+|--+|..|.+. |.+|.+..+.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~------g~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL------GKEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT------TSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHh------CcEEEEEeccc
Confidence 588999999999999999998 98888777654
No 500
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=86.83 E-value=2.8 Score=38.13 Aligned_cols=37 Identities=19% Similarity=0.160 Sum_probs=30.9
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhhhhhhcCCcEEEEEecCC
Q 021218 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (316)
Q Consensus 107 ~l~G~kkIGIIG~-G~mG~AlA~~Lr~~~~~~g~G~~Vivg~r~~ 150 (316)
.++| +++-|+|. |-||.++++.|.+. |++|++..|+.
T Consensus 2 ~~~~-k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~ 39 (262)
T TIGR03325 2 RLKG-EVVLVTGGASGLGRAIVDRFVAE------GARVAVLDKSA 39 (262)
T ss_pred CcCC-cEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 3678 99999995 68999999999998 99988776654
Done!