RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 021218
(316 letters)
>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein);
rossmann fold, NADPH, knotted protein, branched-chain
amino biosynthesis; 1.55A {Oryza sativa japonica group}
PDB: 3fr8_A* 1qmg_A* 1yve_I*
Length = 525
Score = 350 bits (900), Expect = e-118
Identities = 212/236 (89%), Positives = 225/236 (95%)
Query: 72 LDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLR 131
LDF+TSVF K+ +SLA +EYIVRGGR+LF LLP+AF GI QIGVIGWGSQGPAQAQNLR
Sbjct: 15 LDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLR 74
Query: 132 DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191
DSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLGDI+ET+SGSDLVLLLISDAAQ
Sbjct: 75 DSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQ 134
Query: 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251
ADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI VIAVCPKGMGPSVRRLYVQG
Sbjct: 135 ADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQG 194
Query: 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG 307
KEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGERG
Sbjct: 195 KEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERG 250
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot,
C-terminal alpha-helical domain oxidoreductase; 2.00A
{Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Length = 338
Score = 148 bits (377), Expect = 1e-42
Identities = 64/197 (32%), Positives = 99/197 (50%), Gaps = 26/197 (13%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ +IG+GSQG A A NL+DS + V VGLR GS + A+A A G + D+
Sbjct: 19 VAIIGYGSQGHAHACNLKDSGVD------VTVGLRSGSATVAKAEAHGL-----KVADVK 67
Query: 174 ETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGF--LLGHLQSMGLDFPKNI 230
++ +D+V++L D Q Y++ I +K + L +HGF + ++
Sbjct: 68 TAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYNQVVP-----RADL 122
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PF 288
VI + PK G +VR +V+G GI A++QD G A NVAL ++ +G
Sbjct: 123 DVIMIAPKAPGHTVRSEFVKGG-----GIPDLIAIYQDASGNAKNVALSYACGVGGGRTG 177
Query: 289 TFATTLEQEYRSDIFGE 305
TT + E +D+FGE
Sbjct: 178 IIETTFKDETETDLFGE 194
>1yrl_A Ketol-acid reductoisomerase; branched-chain amino acid
biosynthesis, knotted protein, oxidoreductase; 2.60A
{Escherichia coli}
Length = 491
Score = 142 bits (360), Expect = 6e-39
Identities = 61/203 (30%), Positives = 91/203 (44%), Gaps = 32/203 (15%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-----RSFAEARAAGFTEENGT 168
+ ++G G+QG Q N+RDS + + LRK + S+ +A GF
Sbjct: 40 VVIVGCGAQGLNQGLNMRDSGLD------ISYALRKEAIAEKRASWRKATENGF-----K 88
Query: 169 LGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPK 228
+G E I +DLV+ L D +D + MK + LG SHGF ++ +G K
Sbjct: 89 VGTYEELIPQADLVINLTPDKQHSDVVRTVQPLMKDGAALGYSHGF---NIVEVGEQIRK 145
Query: 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGS 286
+I V+ V PK G VR Y +G G+ + AVH D G +A W+ A G
Sbjct: 146 DITVVMVAPKCPGTEVREEYKRGF-----GVPTLIAVHPENDPKGEGMAIAKAWAAATGG 200
Query: 287 PFTFA----TTLEQEYRSDIFGE 305
A ++ E +SD+ GE
Sbjct: 201 --HRAGVLESSFVAEVKSDLMGE 221
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 55.1 bits (132), Expect = 6e-09
Identities = 26/173 (15%), Positives = 49/173 (28%), Gaps = 20/173 (11%)
Query: 114 IGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+ ++G G G + + DS + + G L D
Sbjct: 14 VAILGAGGKMGARITRKIHDSAHHL-------AAIEIAPEGRDRLQGMGIP-----LTDG 61
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF--LLGHLQSMGLDFPKNI 230
I +D+V+L + D E I ++P +I+ + G + +I
Sbjct: 62 DGWIDEADVVVLALPDNIIEKVAEDIVPRVRPGTIVLILDAAAPYAGVMPE-----RADI 116
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
P + GI V + G + A+G +
Sbjct: 117 TYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADIC 169
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 5e-06
Identities = 36/286 (12%), Positives = 82/286 (28%), Gaps = 83/286 (29%)
Query: 9 SRPIPKFS-PSPSS-ETLKEALKHLNLASF------SSTAKSLRALKTTTGRGSALSAWM 60
++ K++ L++AL L A + K+ W+
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT----------------WV 166
Query: 61 ASETALKTPFLLDFETSVFKKDMISLA--DRDEYIVRGGRDLF-----NLLPDAFNGINQ 113
A + L + +F ++L + E ++ + L N + + N
Sbjct: 167 ALDVCLSYKVQCKMDFKIF---WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 114 IGVIGWGSQGP------AQAQN----LRD----SLAEA---KSDIVV---------KVGL 147
I +N L + A I++ +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 148 RKGSRSFAEARAAGFTEE----------NGTLGDI-YETISGSDLVLLLIS-----DAAQ 191
+ + + T + + D+ E ++ + L +I+ A
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 192 ADNYEKIFSCMKPNSILGLSHGFL-----LGHLQSMGLDFPKNIGV 232
DN++ + +C K +I+ S L + + FP + +
Sbjct: 344 WDNWKHV-NCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAHI 387
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 1e-05
Identities = 64/339 (18%), Positives = 101/339 (29%), Gaps = 129/339 (38%)
Query: 16 SPSPSSETLKEA--------LKHLNLASFSSTAKSL--------RALKTTTGRGSAL-SA 58
S +P + L + + LA + TAK L LK TG L +A
Sbjct: 223 SNTPDKDYLLSIPISCPLIGV--IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 59 --------W----MASETALKTPFLL-----------DFETSVFKKD----------MIS 85
W ++ A+ F + S+ + M+S
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 86 LADRDEYIVRGGRDLFNL-LPDA-------FNGINQIGVIGWGSQGPAQA-----QNLRD 132
+++ + V+ + N LP NG + V+ GP Q+ LR
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL-VVS----GPPQSLYGLNLTLRK 395
Query: 133 SLAEAKSDIVVKVGL--RK--GSRSF--------------AEARAAGFTEENGTLGD--- 171
+ A + D ++ RK S F A +N +
Sbjct: 396 AKAPSGLDQS-RIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454
Query: 172 ----IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGL------SHGFLLGHLQS 221
+Y+T GSDL E+I C I+ L + F H+
Sbjct: 455 IQIPVYDTFDGSDL------RVLSGSISERIVDC-----IIRLPVKWETTTQFKATHI-- 501
Query: 222 MGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259
LDF P G + G+G R G G +
Sbjct: 502 --LDFGP---GGAS----GLGVLTHRN-KDGT---GVRV 527
Score = 43.5 bits (102), Expect = 8e-05
Identities = 63/335 (18%), Positives = 106/335 (31%), Gaps = 110/335 (32%)
Query: 3 AATLPFSRPIPKFSPSPSSETLKEALKHLNLASFSSTAKSLRALKTTT--------GRGS 54
A + RP K S S AL RA+ G+G+
Sbjct: 128 TARIMAKRPFDKKSNS--------AL--------------FRAVGEGNAQLVAIFGGQGN 165
Query: 55 ALSAWMASETALKTPFLLD-FETS-VFKKDMI-SLADRDEYIVRGGRDLFNLLPDAFNGI 111
+ E L D ++T V D+I A+ ++R D + N
Sbjct: 166 TDDYF--EE-------LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN-- 214
Query: 112 NQIGVIGWGSQGPAQAQNLRDSLAEAK-SDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170
++ W + P+ + +D L S +G+ + + A+ GFT G L
Sbjct: 215 ----ILEWL-ENPSNTPD-KDYLLSIPIS--CPLIGVIQLAHYVVTAKLLGFTP--GELR 264
Query: 171 DIYETISG--SDLVL-LLISDAAQADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGL 224
+ +G LV + I A+ D++E F + ++ F +G +
Sbjct: 265 SYLKGATGHSQGLVTAVAI---AETDSWESFFV----SVRKAITVLFFIGVRCYEA---- 313
Query: 225 DFPKNIGVIAVCPK--------GMG-PS----VRRL---YVQGKEINGAGINSSFAVHQD 268
+P ++ P G PS + L VQ + NS +
Sbjct: 314 -YP----NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ-DYV--NKTNSHLPAGKQ 365
Query: 269 V-----DGRATNVALGWSVALGSP---FTFATTLE 295
V +G V V+ G P + TL
Sbjct: 366 VEISLVNGAKNLV-----VS-GPPQSLYGLNLTLR 394
Score = 34.3 bits (78), Expect = 0.060
Identities = 41/235 (17%), Positives = 64/235 (27%), Gaps = 92/235 (39%)
Query: 120 GSQGPAQAQNLRDSLAEAK------------------SDIV--------VKVGLRKGSR- 152
GSQ +L + A+ DIV + G KG R
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 153 ----------SFAEARAAG---FTEENGTLGDIYETISGSDLVL----------LLISDA 189
+ + + F E N T +L L+ A
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSY--TFRSEKGLLSATQFTQPALTLMEKA 1742
Query: 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMG----LDFPKNIGVIAVCPKG-MGPS- 243
F +K ++ F GH S+G L M
Sbjct: 1743 --------AFEDLKSKGLIPADATF-AGH--SLGEYAAL----------ASLADVMSIES 1781
Query: 244 -VRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQE 297
V ++ +G + AV +D GR +N + +A+ P A + QE
Sbjct: 1782 LVEVVFYRGMTMQ-------VAVPRDELGR-SNYGM---IAIN-PGRVAASFSQE 1824
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 43.3 bits (101), Expect = 6e-05
Identities = 21/165 (12%), Positives = 49/165 (29%), Gaps = 14/165 (8%)
Query: 114 IGVIGWGSQGPAQAQNL-------------RDSLAEAKSDIVVKVGLRKGSRSFAEARAA 160
+ V G G+ + AE + + L +
Sbjct: 5 VCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTE 64
Query: 161 GFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220
+ D ISG+D+V+L + A ++ + ++ ++++ Q
Sbjct: 65 VKSRPKVITKDPEIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPSQAGFEFQ 124
Query: 221 SMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265
+ +++ P R+ G+++ G S A
Sbjct: 125 CRDI-LGDKAAAVSMMSFETLPWACRIKEFGRKVEVLGTKSVLAA 168
>4ezb_A Uncharacterized conserved protein; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 2.10A {Sinorhizobium meliloti}
Length = 317
Score = 34.5 bits (79), Expect = 0.037
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 4/96 (4%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
I IG+G + A L + + LR + + A A E D
Sbjct: 26 TIAFIGFGEAAQSIAGGLGG----RNAARLAAYDLRFNDPAASGALRARAAELGVEPLDD 81
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIL 208
I+ +D+VL L+ AA + ++
Sbjct: 82 VAGIACADVVLSLVVGAATKAVAASAAPHLSDEAVF 117
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 31.5 bits (71), Expect = 0.25
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 12/80 (15%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+G++G G + A L S V V GSR+ R A +
Sbjct: 31 VGILGSGDFARSLATRL------VGSGFKVVV----GSRNP--KRTARLFPSAAQVTFQE 78
Query: 174 ETISGSDLVLLLISDAAQAD 193
E +S +++ + + +
Sbjct: 79 EAVSSPEVIFVAVFREHYSS 98
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6
Length = 276
Score = 31.7 bits (71), Expect = 0.25
Identities = 13/114 (11%), Positives = 29/114 (25%), Gaps = 11/114 (9%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ +G G+ + L+D + + SRS AR G +
Sbjct: 5 LNFVGTGTLTRFFLECLKDRYE------IGYIL----SRSIDRARNLA-EVYGGKAATLE 53
Query: 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFP 227
+ + +V +++ D + + P
Sbjct: 54 KHPELNGVVFVIVPDRYIKTVANHLNLGDAVLVHCSGFLSSEIFKKSGRASIHP 107
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.38
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 25 KEALKHL--NLASFS-STAKSLRALKTT 49
K+ALK L +L ++ +A +L A+K T
Sbjct: 19 KQALKKLQASLKLYADDSAPAL-AIKAT 45
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural
genomics, PSI-biology, midwest center for structu
genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Length = 312
Score = 30.6 bits (69), Expect = 0.56
Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 8/95 (8%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+G IG+G A A L +A + + A G + +
Sbjct: 27 LGFIGFGEAASAIASGL----RQAGAIDMAAYDAASAESWRPRAEELGVS----CKASVA 78
Query: 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIL 208
E D++ L++ A + ++ + ++
Sbjct: 79 EVAGECDVIFSLVTAQAALEVAQQAGPHLCEGALY 113
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 30.1 bits (67), Expect = 0.92
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 9/100 (9%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
I +IG G+ A+ L K +V+V SR+ AR E D+
Sbjct: 13 IVLIGAGNLATNLAKALY-----RKGFRIVQVY----SRTEESARELAQKVEAEYTTDLA 63
Query: 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213
E + L ++ + D+A A+ + I + +++ + G
Sbjct: 64 EVNPYAKLYIVSLKDSAFAELLQGIVEGKREEALMVHTAG 103
>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free
form, FULL-length protein comprising protein core and
N-terminal domain, metal; 1.80A {Sus scrofa} SCOP:
a.65.1.1 PDB: 1mcx_A 1ain_A 1bo9_A
Length = 346
Score = 27.3 bits (60), Expect = 6.9
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 1 MAAATLPFSRPIPKFSPSPSSETLKEALKHL 31
P P F+PS E L +A+
Sbjct: 28 SKGGPGSAVSPYPTFNPSSDVEALHKAITVK 58
>1unf_X Iron superoxide dismutase; oxidoreductase, eukaryotic,
metalloprotein; 1.97A {Vigna unguiculata} SCOP: a.2.11.1
d.44.1.1
Length = 238
Score = 26.9 bits (60), Expect = 7.1
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 165 ENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPN 205
+ +L +I T +L ++AAQ N++ + CMKP
Sbjct: 65 DGKSLEEIIVTAYNKGDILPAFNNAAQVWNHDFFWECMKPG 105
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 27.5 bits (61), Expect = 7.4
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 15/68 (22%)
Query: 169 LGDIYETISGSDLVLLLISDAAQADNYE-----KIFSCMKPNSILGLSHGFLLGHLQSMG 223
+ + IS D+V I + Q + + S + P S + G + G +
Sbjct: 345 VAEAANCISLGDIVEKKIRSSEQ--LWSLLPLHAVLSSVYPASKV---AGHMAGRIN--- 396
Query: 224 LDFPKNIG 231
F +G
Sbjct: 397 --FTAWLG 402
>2oay_A C1-inhibitor, plasma protease C1 inhibitor, C1 INH, C1INH; latent
serpin, RCL insertion, immune system,hydrolase inhibi;
HET: NAG; 2.35A {Homo sapiens}
Length = 390
Score = 27.2 bits (61), Expect = 8.5
Identities = 5/29 (17%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 12 IPKFSPSPSSETLKEALKHLNLASFSSTA 40
+P+ + S + + ++ L FS
Sbjct: 288 LPRIKVTTSQD-MLSIMEKLEFFDFSYDL 315
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP,
oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo
sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Length = 322
Score = 26.8 bits (60), Expect = 9.7
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 9/73 (12%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG--TLGD 171
+G IG G A A+ + A I+ S + + G
Sbjct: 25 VGFIGAGQLAFALAKGFTAAGVLAAHKIMA-------SSPDMDLATVSALRKMGVKLTPH 77
Query: 172 IYETISGSDLVLL 184
ET+ SD++ L
Sbjct: 78 NKETVQHSDVLFL 90
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.387
Gapped
Lambda K H
0.267 0.0589 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,771,560
Number of extensions: 291774
Number of successful extensions: 662
Number of sequences better than 10.0: 1
Number of HSP's gapped: 643
Number of HSP's successfully gapped: 25
Length of query: 316
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 222
Effective length of database: 4,077,219
Effective search space: 905142618
Effective search space used: 905142618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.0 bits)