BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021219
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z32|X Chain X, Structure-Function Relationships In Human Salivary Alpha-
Amylase: Role Of Aromatic Residues
Length = 496
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 99 GRTSELGGFFANVDANHPERARTGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMS 158
G +S G +F + P +G ++ G GDI+ M+ + +++ LD++
Sbjct: 110 GTSSTCGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENMNDATQVRDCRLSGLLDLA 169
Query: 159 -GAEYVRKEI 167
G +YVR +I
Sbjct: 170 LGKDYVRSKI 179
>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their Pro-
Apoptotic Ligands
pdb|1RE6|B Chain B, Localisation Of Dynein Light Chains 1 And 2 And Their Pro-
Apoptotic Ligands
Length = 94
Score = 29.3 bits (64), Expect = 2.8, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 128 GDLSNAIGDIDPMDMSESMQE--------AMHRSNLDMSGAEYVRKEIPLHVLPT 174
G +S+ I DMSE MQ+ AM + N++ A Y++KE PT
Sbjct: 4 GSMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPT 58
>pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 172 LPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVH 216
LP +LKL +T + R+LYE +R M N + H
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTH 96
>pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase
pdb|1OLS|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1OLX|A Chain A, Roles Of His291-alpha And His146-beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-chain
Alpha-ketoacid Dehydrogenase
pdb|1U5B|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1WCI|A Chain A, Reactivity Modulation Of Human Branched-chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEU|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEV|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEW|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 172 LPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVH 216
LP +LKL +T + R+LYE +R M N + H
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTH 96
>pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 172 LPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVH 216
LP +LKL +T + R+LYE +R M N + H
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTH 96
>pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1V1R|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 172 LPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVH 216
LP +LKL +T + R+LYE +R M N + H
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTH 96
>pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 172 LPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVH 216
LP +LKL +T + R+LYE +R M N + H
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTH 96
>pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 172 LPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVH 216
LP +LKL +T + R+LYE +R M N + H
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTH 96
>pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 172 LPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVH 216
LP +LKL +T + R+LYE +R M N + H
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTH 96
>pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 172 LPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVH 216
LP +LKL +T + R+LYE +R M N + H
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTH 96
>pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 172 LPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVH 216
LP +LKL +T + R+LYE +R M N + H
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTH 96
>pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 172 LPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVH 216
LP +LKL +T + R+LYE +R M N + H
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTH 96
>pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 172 LPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVH 216
LP +LKL +T + R+LYE +R M N + H
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTH 96
>pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 172 LPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVH 216
LP +LKL +T + R+LYE +R M N + H
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTH 96
>pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 172 LPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVH 216
LP +LKL +T + R+LYE +R M N + H
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTH 96
>pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 172 LPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVH 216
LP +LKL +T + R+LYE +R M N + H
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTH 96
>pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 172 LPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVH 216
LP +LKL +T + R+LYE +R M N + H
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTH 96
>pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
pdb|2J9F|C Chain C, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
Length = 400
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 172 LPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVH 216
LP +LKL +T + R+LYE +R M N + H
Sbjct: 52 LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTH 96
>pdb|3DHP|A Chain A, Probing The Role Of Aromatic Residues At The Secondary
Saccharide Binding Sites Of Human Salivary Alpha-Amylase
In Substrate Hydrolysis And Bacterial Binding
Length = 496
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 99 GRTSELGGFFANVDANHPERARTGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMS 158
G +S G +F + P +G ++ G GDI+ + + +++ LD++
Sbjct: 110 GTSSTCGSYFNPGSRDFPAVPYSGADFNDGKCKTGSGDIENYNDATQVRDCRLSGLLDLA 169
Query: 159 -GAEYVRKEI 167
G +YVR +I
Sbjct: 170 LGKDYVRSKI 179
>pdb|1JXK|A Chain A, Role Of Ethe Mobile Loop In The Mehanism Of Human Salivary
Amylase
pdb|1MFU|A Chain A, Probing The Role Of A Mobile Loop In Human Salivary
Amylase: Structural Studies On The Loop-Deleted Mutant
Length = 491
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 99 GRTSELGGFFANVDANHPERARTGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMS 158
G +S G +F + P +G ++ G GDI+ + + +++ LD++
Sbjct: 110 GTSSTCGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLSGLLDLA 169
Query: 159 -GAEYVRKEI 167
G +YVR +I
Sbjct: 170 LGKDYVRSKI 179
>pdb|1JXJ|A Chain A, Role Of Mobile Loop In The Mechanism Of Human Salivary
Amylase
Length = 496
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 99 GRTSELGGFFANVDANHPERARTGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMS 158
G +S G +F + P +G ++ G GDI+ + + +++ LD++
Sbjct: 110 GTSSTCGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLSGLLDLA 169
Query: 159 -GAEYVRKEI 167
G +YVR +I
Sbjct: 170 LGKDYVRSKI 179
>pdb|1NM9|A Chain A, Crystal Structure Of Recombinant Human Salivary Amylase
Mutant W58a
Length = 496
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 99 GRTSELGGFFANVDANHPERARTGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMS 158
G +S G +F + P +G ++ G GDI+ + + +++ LD++
Sbjct: 110 GTSSTCGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLSGLLDLA 169
Query: 159 -GAEYVRKEI 167
G +YVR +I
Sbjct: 170 LGKDYVRSKI 179
>pdb|3BLK|A Chain A, Role Of Aromatic Residues In Starch Binding
Length = 496
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 99 GRTSELGGFFANVDANHPERARTGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMS 158
G +S G +F + P +G ++ G GDI+ + + +++ LD++
Sbjct: 110 GTSSTCGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLSGLLDLA 169
Query: 159 -GAEYVRKEI 167
G +YVR +I
Sbjct: 170 LGKDYVRSKI 179
>pdb|3BLP|X Chain X, Role Of Aromatic Residues In Human Salivary Alpha-Amylase
Length = 496
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 99 GRTSELGGFFANVDANHPERARTGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMS 158
G +S G +F + P +G ++ G GDI+ + + +++ LD++
Sbjct: 110 GTSSTCGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLSGLLDLA 169
Query: 159 -GAEYVRKEI 167
G +YVR +I
Sbjct: 170 LGKDYVRSKI 179
>pdb|1C8Q|A Chain A, Structure Solution And Refinement Of The Recombinant Human
Salivary Amylase
pdb|1MFV|A Chain A, Probing The Role Of A Mobile Loop In Human Slaivary
Amylase: Structural Studies On The Loop-Deleted Enzyme
pdb|1XV8|A Chain A, Crystal Structure Of Human Salivary Alpha-Amylase Dimer
pdb|1XV8|B Chain B, Crystal Structure Of Human Salivary Alpha-Amylase Dimer
pdb|1SMD|A Chain A, Human Salivary Amylase
Length = 496
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 99 GRTSELGGFFANVDANHPERARTGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMS 158
G +S G +F + P +G ++ G GDI+ + + +++ LD++
Sbjct: 110 GTSSTCGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLSGLLDLA 169
Query: 159 -GAEYVRKEI 167
G +YVR +I
Sbjct: 170 LGKDYVRSKI 179
>pdb|1Q4N|X Chain X, Structural Studies Of Phe256trp Of Human Salivary Alpha-
Amylase: Implications For The Role Of A Conserved Water
Molecule And Its Associated Chain In Enzyme Activity
Length = 496
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 99 GRTSELGGFFANVDANHPERARTGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMS 158
G +S G +F + P +G ++ G GDI+ + + +++ LD++
Sbjct: 110 GTSSTCGSYFNPGSRDFPAVPYSGWDFNDGKCKTGSGDIENYNDATQVRDCRLSGLLDLA 169
Query: 159 -GAEYVRKEI 167
G +YVR +I
Sbjct: 170 LGKDYVRSKI 179
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,193,033
Number of Sequences: 62578
Number of extensions: 304743
Number of successful extensions: 433
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 416
Number of HSP's gapped (non-prelim): 27
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)