BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021219
(316 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4VA72|BRCC3_XENTR Lys-63-specific deubiquitinase BRCC36 OS=Xenopus tropicalis
GN=brcc3 PE=2 SV=1
Length = 261
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 1 MYQLLDTGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDGKQN----HISKPIALLPVNKST 55
MYQ++D GF+GLIFSCF ED N K GRI FQS +++ I P+ ++P N
Sbjct: 111 MYQMMDVGFVGLIFSCFIEDKNTKTGRILYTCFQSVQAQKSSEYERIEVPLHVVPHNTIR 170
Query: 56 VIDLESSL 63
+ LES++
Sbjct: 171 KVCLESAV 178
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 6/111 (5%)
Query: 160 AEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLT 219
+EY R E+PLHV+P +++ K+ L S +L R+L +EE+ AY + S G + +T
Sbjct: 152 SEYERIEVPLHVVPHNTIRKV--CLESAVELPRILCQEEQDAYRRI----HSLGHLDSIT 205
Query: 220 YIHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESE 270
IH+ S + ++C + P + L+DRL++N+ R L E + L E
Sbjct: 206 KIHNGSVFTKNLCGQMSAISGPLLQWLEDRLEQNQQRAQELQSEKEQLLQE 256
>sp|Q66GV6|BRCC3_XENLA Lys-63-specific deubiquitinase BRCC36 OS=Xenopus laevis GN=brcc3
PE=2 SV=1
Length = 261
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 1 MYQLLDTGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDGKQN----HISKPIALLPVNKST 55
MYQ++D GF+GLIFSCF ED N K GRI FQS +++ I P+ ++P N
Sbjct: 111 MYQMMDVGFVGLIFSCFIEDKNTKTGRILYTCFQSVQAQKSSEYERIEVPLHVVPHNTIR 170
Query: 56 VIDLESSL 63
+ LES++
Sbjct: 171 KVCLESAV 178
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 160 AEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLT 219
+EY R E+PLHV+P +++ K+ L S +L R+L +EE+ AY + S G + +T
Sbjct: 152 SEYERIEVPLHVVPHNTIRKV--CLESAVELPRILCQEEQDAYRRI----HSLGHLDSIT 205
Query: 220 YIHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESE 270
IH+ S + ++C + P + L+DRL++N R L E + L E
Sbjct: 206 KIHNGSVFTKNLCGQMSAISGPLLQWLEDRLEQNRQRAQELQSEKEQLLQE 256
>sp|B5X8M4|BRCC3_SALSA Lys-63-specific deubiquitinase BRCC36 OS=Salmo salar GN=brcc3 PE=2
SV=1
Length = 260
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 1 MYQLLDTGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDGKQ----NHISKPIALLPVNKST 55
MYQ++D GF+GLIFSCF ED N K GR+ FQS ++ I PI ++P
Sbjct: 111 MYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSVQAQKGSEYERIEIPIHVVPHEAIG 170
Query: 56 VIDLESSL 63
+ LES++
Sbjct: 171 KVCLESAV 178
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Query: 159 GAEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPL 218
G+EY R EIP+HV+P ++ K+ L S +L R+L +EE+ Y + S + P+
Sbjct: 151 GSEYERIEIPIHVVPHEAIGKV--CLESAVELPRILCQEEQDTYRKI----HSLTHLDPI 204
Query: 219 TYIHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESE 270
T IH+ S + ++C + P + L+DRL++N + L E + L E
Sbjct: 205 TKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNRQSVIELQLEKERLTQE 256
>sp|P46737|BRCC3_MOUSE Lys-63-specific deubiquitinase BRCC36 OS=Mus musculus GN=Brcc3 PE=2
SV=1
Length = 291
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 1 MYQLLDTGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDGKQN----HISKPIALLPVNKST 55
MYQ++D GF+GLIFSCF ED N K GR+ FQS +++ I PI ++P
Sbjct: 141 MYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQKSSEYERIEIPIHIVPHITIG 200
Query: 56 VIDLESSL 63
+ LES++
Sbjct: 201 KVCLESAV 208
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 18/98 (18%)
Query: 160 AEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLT 219
+EY R EIP+H++P ++ K+ L S +L ++L +EE+ AY ++H LT
Sbjct: 182 SEYERIEIPIHIVPHITIGKV--CLESAVELPKILCQEEQDAYR----------RIHSLT 229
Query: 220 Y------IHHTSTYQASMCKLIEYCLSPAISALQDRLK 251
+ IH+ S + ++C + P + L+DRL+
Sbjct: 230 HLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLE 267
>sp|B2RYM5|BRCC3_RAT Lys-63-specific deubiquitinase BRCC36 OS=Rattus norvegicus GN=Brcc3
PE=2 SV=1
Length = 291
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 1 MYQLLDTGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDGKQN----HISKPIALLPVNKST 55
MYQ++D GF+GLIFSCF ED N K GR+ FQS +++ I P+ ++P
Sbjct: 141 MYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSVQAQKSSDYERIEIPVHVVPHVTIG 200
Query: 56 VIDLESSL 63
+ LES++
Sbjct: 201 KVCLESAV 208
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 18/117 (15%)
Query: 160 AEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLT 219
++Y R EIP+HV+P ++ K+ L S +L ++L +EE+ AY ++H LT
Sbjct: 182 SDYERIEIPVHVVPHVTIGKV--CLESAVELPKILCQEEQDAYR----------RIHSLT 229
Query: 220 Y------IHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESE 270
+ IH+ S + ++C + P + L+DRL++N+ L L E + L +E
Sbjct: 230 HLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLRELQREKEELMAE 286
>sp|Q7M757|BRC3L_MOUSE Lys-63-specific deubiquitinase BRCC36-like OS=Mus musculus
GN=C6.1al PE=2 SV=1
Length = 291
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 18/117 (15%)
Query: 160 AEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLT 219
+EY R EIP+H++P +++ + L S +L +L +EE+ AY ++H LT
Sbjct: 182 SEYERLEIPIHIVPRTTIGTV--CLRSAIELPGILCQEEQEAYR----------RIHGLT 229
Query: 220 Y------IHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESE 270
+ IH+ S + +C + P + L+DRL++N+ RL L E + L E
Sbjct: 230 HLDSVTKIHNGSVFTKHLCSQMSAVCGPLLQWLEDRLEQNQQRLQELEQEKEDLMEE 286
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 1 MYQLLDTGFIGLIFSCFSEDA-NKVGRIQVIAFQSSDGKQN----HISKPIALLPVNKST 55
MYQ++D F+GLIF+CF ED K+GR+ FQS ++ + PI ++P
Sbjct: 141 MYQMMDQSFVGLIFACFIEDKPTKIGRVLYTCFQSVQASKSSEYERLEIPIHIVPRTTIG 200
Query: 56 VIDLESSL 63
+ L S++
Sbjct: 201 TVCLRSAI 208
>sp|B0KWU8|BRCC3_CALJA Lys-63-specific deubiquitinase BRCC36 OS=Callithrix jacchus
GN=BRCC3 PE=3 SV=2
Length = 316
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 1 MYQLLDTGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDGKQN 40
MYQ++D GF+GLIFSCF ED N K GR+ FQS +++
Sbjct: 141 MYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQKS 181
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 18/109 (16%)
Query: 168 PLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTY------I 221
P+H++P ++ K+ L S +L ++L +EE+ AY ++H LT+ I
Sbjct: 215 PIHIVPHVTIGKV--CLESAVELPKILCQEEQDAYR----------RIHSLTHLDSVTKI 262
Query: 222 HHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESE 270
H+ S + ++C + P + L+DRL++N+ L L E + L E
Sbjct: 263 HNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLRELQQEKEELMQE 311
>sp|P46736|BRCC3_HUMAN Lys-63-specific deubiquitinase BRCC36 OS=Homo sapiens GN=BRCC3 PE=1
SV=2
Length = 316
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 1 MYQLLDTGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDGKQN 40
MYQ++D GF+GLIFSCF ED N K GR+ FQS +++
Sbjct: 141 MYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQKS 181
Score = 38.1 bits (87), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 18/90 (20%)
Query: 168 PLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTY------I 221
P+H++P ++ K+ L S +L ++L +EE+ AY ++H LT+ I
Sbjct: 215 PIHIVPHVTIGKV--CLESAVELPKILCQEEQDAYR----------RIHSLTHLDSVTKI 262
Query: 222 HHTSTYQASMCKLIEYCLSPAISALQDRLK 251
H+ S + ++C + P + L+DRL+
Sbjct: 263 HNGSVFTKNLCSQMSAVSGPLLQWLEDRLE 292
>sp|Q5R9L6|BRCC3_PONAB Lys-63-specific deubiquitinase BRCC36 OS=Pongo abelii GN=BRCC3 PE=2
SV=1
Length = 247
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 1 MYQLLDTGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDGKQN 40
MYQ++D GF+GLIFSCF ED N K GR+ FQS +++
Sbjct: 141 MYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQKS 181
>sp|A5PJP6|BRCC3_BOVIN Lys-63-specific deubiquitinase BRCC36 OS=Bos taurus GN=BRCC3 PE=2
SV=1
Length = 316
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 1 MYQLLDTGFIGLIFSCFSEDAN-KVGRIQVIAFQSSDGKQN 40
MYQ++D GF+GLIFSCF ED N K GR+ FQS +++
Sbjct: 141 MYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQKS 181
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 18/109 (16%)
Query: 168 PLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTY------I 221
P+H++P ++ K+ L S +L ++L +EE+ AY ++H LT+ I
Sbjct: 215 PIHIVPHVTIGKV--CLESAVELPKILCQEEQDAYR----------RIHSLTHLDSVTKI 262
Query: 222 HHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESE 270
H+ S + ++C + P + L+DRL++N+ + L E + L E
Sbjct: 263 HNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHVQELQQEKEELLQE 311
>sp|Q8UCD5|MODC_AGRT5 Molybdenum import ATP-binding protein ModC OS=Agrobacterium
tumefaciens (strain C58 / ATCC 33970) GN=modC PE=3 SV=1
Length = 358
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 14/115 (12%)
Query: 120 RTGGNYQTGDLSNAIGD--IDPMDMSESMQEAMHRSNLDMSGAEYVRKEIPLHVLPTSSL 177
R G + TG +NA D ID + +S +Q +R +SG E R I +L + L
Sbjct: 98 RYGRWFTTGKDTNANDDRIIDMLGISHLLQRRPNR----LSGGEKQRVAIGRALLSSPRL 153
Query: 178 LKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTSTYQASMC 232
L +D PL S +E+R A ++ + D P+ Y+ H+ A +
Sbjct: 154 LLMDEPLASL--------DEQRKAEIIPYLERLRDETKIPIVYVSHSIQEVARLA 200
>sp|Q66D71|MODC_YERPS Molybdenum import ATP-binding protein ModC OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=modC
PE=3 SV=1
Length = 359
Score = 36.2 bits (82), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 120 RTGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMSGAEYVRKEIPLHVLPTSSLLK 179
R GN Q G ++ G D + ++ ++R +SG E R I +L LL
Sbjct: 92 RVRGNLQYGMAASMRGQFDAIVGLLGIEPLLNRFPFTLSGGEKQRVAIGRALLTAPELLL 151
Query: 180 LDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHT 224
+D PL S DL R + E Y + + Q+++ P+ Y+ H+
Sbjct: 152 MDEPLASL-DLPR---KRELLPYLERLAQDVNT----PILYVSHS 188
>sp|Q1CFP9|MODC_YERPN Molybdenum import ATP-binding protein ModC OS=Yersinia pestis bv.
Antiqua (strain Nepal516) GN=modC PE=3 SV=1
Length = 359
Score = 36.2 bits (82), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 120 RTGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMSGAEYVRKEIPLHVLPTSSLLK 179
R GN Q G ++ G D + ++ ++R +SG E R I +L LL
Sbjct: 92 RVRGNLQYGMAASMRGQFDAIVGLLGIEPLLNRFPFTLSGGEKQRVAIGRALLTAPELLL 151
Query: 180 LDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHT 224
+D PL S DL R + E Y + + Q+++ P+ Y+ H+
Sbjct: 152 MDEPLASL-DLPR---KRELLPYLERLAQDVNT----PILYVSHS 188
>sp|Q8ZGX6|MODC_YERPE Molybdenum import ATP-binding protein ModC OS=Yersinia pestis
GN=modC PE=3 SV=1
Length = 359
Score = 36.2 bits (82), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 120 RTGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMSGAEYVRKEIPLHVLPTSSLLK 179
R GN Q G ++ G D + ++ ++R +SG E R I +L LL
Sbjct: 92 RVRGNLQYGMAASMRGQFDAIVGLLGIEPLLNRFPFTLSGGEKQRVAIGRALLTAPELLL 151
Query: 180 LDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHT 224
+D PL S DL R + E Y + + Q+++ P+ Y+ H+
Sbjct: 152 MDEPLASL-DLPR---KRELLPYLERLAQDVNT----PILYVSHS 188
>sp|Q1C951|MODC_YERPA Molybdenum import ATP-binding protein ModC OS=Yersinia pestis bv.
Antiqua (strain Antiqua) GN=modC PE=3 SV=1
Length = 359
Score = 36.2 bits (82), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 120 RTGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMSGAEYVRKEIPLHVLPTSSLLK 179
R GN Q G ++ G D + ++ ++R +SG E R I +L LL
Sbjct: 92 RVRGNLQYGMAASMRGQFDAIVGLLGIEPLLNRFPFTLSGGEKQRVAIGRALLTAPELLL 151
Query: 180 LDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHT 224
+D PL S DL R + E Y + + Q+++ P+ Y+ H+
Sbjct: 152 MDEPLASL-DLPR---KRELLPYLERLAQDVNT----PILYVSHS 188
>sp|Q940G6|GID1C_ARATH Gibberellin receptor GID1C OS=Arabidopsis thaliana GN=GID1C PE=1
SV=1
Length = 344
Score = 34.7 bits (78), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 160 AEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAI--MQNMSDGKVHP 217
AE++ +++P + P + + D + T+L +Y A + +I +QN DG++ P
Sbjct: 46 AEFLDRKVPANANPVNGVFSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVP 105
Query: 218 LTYIHHTSTYQAS---------MC-KLIEYCLSPAISALQDRLKEN 253
+ H ++ S +C +L+ C + +S R EN
Sbjct: 106 VIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPEN 151
>sp|Q7S4G7|MTNA_NEUCR Methylthioribose-1-phosphate isomerase OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=mri-1 PE=3 SV=1
Length = 388
Score = 31.6 bits (70), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 21 ANKVGRIQVIAFQSSDGKQNHISKPIALLPVNKSTVIDLESSLSSSESLSARSGNVLAEN 80
ANK+G Q+ G + ++ P + V+ T D+E E L+ SG V+ +
Sbjct: 267 ANKIGTYQLAVLAKHHGIKFMVAAPTTSIDVDTETGDDIEIEQRKREELTQISGAVVNAD 326
Query: 81 PEQDTGDSKIVA------GSWKGG 98
DT S VA G W G
Sbjct: 327 GSIDTSKSVRVAIADQRIGVWNPG 350
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.128 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,497,851
Number of Sequences: 539616
Number of extensions: 4594562
Number of successful extensions: 10619
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 10457
Number of HSP's gapped (non-prelim): 165
length of query: 316
length of database: 191,569,459
effective HSP length: 117
effective length of query: 199
effective length of database: 128,434,387
effective search space: 25558443013
effective search space used: 25558443013
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)