Query 021219
Match_columns 316
No_of_seqs 57 out of 59
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 08:32:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021219.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021219hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08068 MPN_BRCC36 Mov34/MPN/P 100.0 7.4E-37 1.6E-41 281.5 11.8 129 1-254 115-244 (244)
2 KOG1555 26S proteasome regulat 99.9 3.1E-25 6.7E-30 211.2 5.0 229 1-271 76-308 (316)
3 cd08067 MPN_2A_DUB Mov34/MPN/P 96.3 0.0022 4.8E-08 57.7 2.2 39 1-40 105-150 (187)
4 PF11471 Sugarporin_N: Maltopo 79.4 2.6 5.5E-05 32.3 3.4 29 245-273 29-57 (60)
5 TIGR01834 PHA_synth_III_E poly 76.1 13 0.00028 37.0 8.0 80 184-270 227-318 (320)
6 PF11471 Sugarporin_N: Maltopo 73.7 5.8 0.00013 30.4 4.0 26 243-268 34-59 (60)
7 PF10883 DUF2681: Protein of u 68.6 27 0.00058 28.8 7.0 39 234-272 9-47 (87)
8 TIGR02449 conserved hypothetic 64.5 16 0.00034 28.7 4.7 30 243-272 2-31 (65)
9 PF15458 NTR2: Nineteen comple 62.2 76 0.0017 30.0 9.7 81 190-271 154-245 (254)
10 PRK00888 ftsB cell division pr 58.6 51 0.0011 27.4 7.1 48 229-276 6-62 (105)
11 PF04977 DivIC: Septum formati 54.6 35 0.00077 25.3 5.1 31 244-274 20-50 (80)
12 PF06305 DUF1049: Protein of u 53.5 69 0.0015 23.4 6.4 40 232-273 27-66 (68)
13 PF11853 DUF3373: Protein of u 53.4 22 0.00047 37.3 4.9 31 245-276 22-52 (489)
14 TIGR03782 Bac_Flav_CT_J Bacter 52.6 22 0.00047 35.6 4.6 38 235-272 79-116 (322)
15 PF13600 DUF4140: N-terminal d 48.6 47 0.001 26.4 5.2 36 237-272 66-101 (104)
16 PF08826 DMPK_coil: DMPK coile 46.6 50 0.0011 25.6 4.8 32 241-272 25-56 (61)
17 TIGR03759 conj_TIGR03759 integ 43.4 28 0.00061 32.7 3.6 55 194-272 14-73 (200)
18 TIGR02209 ftsL_broad cell divi 43.0 61 0.0013 24.7 4.9 34 243-276 26-59 (85)
19 PF00170 bZIP_1: bZIP transcri 40.3 68 0.0015 23.8 4.6 29 243-271 28-56 (64)
20 PF06005 DUF904: Protein of un 40.2 68 0.0015 25.3 4.8 27 243-269 6-32 (72)
21 smart00338 BRLZ basic region l 40.1 75 0.0016 23.5 4.8 31 242-272 27-57 (65)
22 PF13815 Dzip-like_N: Iguana/D 38.8 1.1E+02 0.0023 25.6 6.0 35 239-273 78-112 (118)
23 PF15449 Retinal: Retinal prot 38.6 1.2E+02 0.0026 35.3 8.0 72 185-271 177-253 (1287)
24 PF07716 bZIP_2: Basic region 38.1 88 0.0019 22.6 4.8 20 252-271 29-48 (54)
25 COG3416 Uncharacterized protei 38.1 1.3E+02 0.0028 29.0 7.1 26 245-270 52-77 (233)
26 PF14331 ImcF-related_N: ImcF- 35.9 3.4E+02 0.0074 25.5 9.6 100 165-278 68-178 (266)
27 COG5509 Uncharacterized small 34.4 64 0.0014 25.6 3.7 26 251-276 28-53 (65)
28 cd00632 Prefoldin_beta Prefold 32.6 1.9E+02 0.004 23.4 6.4 50 223-272 45-94 (105)
29 KOG2483 Upstream transcription 32.4 91 0.002 29.7 5.2 36 240-275 104-139 (232)
30 PF01621 Fusion_gly_K: Cell fu 32.2 40 0.00087 33.9 2.9 35 185-224 177-211 (337)
31 TIGR02338 gimC_beta prefoldin, 32.0 1.4E+02 0.0031 24.4 5.7 51 223-273 49-99 (110)
32 PF11945 WASH_WAHD: WAHD domai 31.6 1.2E+02 0.0026 29.7 6.0 55 233-287 28-86 (297)
33 PRK09343 prefoldin subunit bet 30.7 1.9E+02 0.004 24.5 6.3 57 216-272 45-102 (121)
34 PHA03276 envelope glycoprotein 30.2 92 0.002 31.5 5.0 34 185-223 176-209 (337)
35 PHA03278 envelope glycoprotein 30.0 49 0.0011 33.4 3.1 34 185-223 177-210 (347)
36 PF00170 bZIP_1: bZIP transcri 29.4 1.5E+02 0.0033 21.9 5.0 29 243-271 35-63 (64)
37 PF11740 KfrA_N: Plasmid repli 28.9 2.9E+02 0.0062 22.2 6.9 36 236-271 83-118 (120)
38 PRK09737 EcoKI restriction-mod 28.9 1.7E+02 0.0038 28.0 6.5 25 253-277 396-420 (461)
39 KOG4571 Activating transcripti 28.7 91 0.002 31.0 4.6 30 242-271 256-285 (294)
40 PHA03275 envelope glycoprotein 28.7 54 0.0012 33.1 3.1 35 185-224 175-209 (340)
41 PRK13729 conjugal transfer pil 28.1 3.1E+02 0.0067 29.0 8.5 25 248-272 97-121 (475)
42 PF01166 TSC22: TSC-22/dip/bun 27.6 1.8E+02 0.004 22.8 5.2 29 243-271 16-44 (59)
43 PF01920 Prefoldin_2: Prefoldi 27.3 1.7E+02 0.0036 22.7 5.1 30 242-271 63-92 (106)
44 PF06103 DUF948: Bacterial pro 27.2 2.4E+02 0.0053 21.9 6.0 35 237-271 15-49 (90)
45 TIGR03752 conj_TIGR03752 integ 27.0 91 0.002 32.8 4.5 11 261-271 115-125 (472)
46 PF04977 DivIC: Septum formati 26.6 1.2E+02 0.0026 22.4 4.1 25 243-267 26-50 (80)
47 PRK11239 hypothetical protein; 26.2 1.1E+02 0.0025 29.1 4.6 29 243-271 185-213 (215)
48 KOG4343 bZIP transcription fac 25.7 1.8E+02 0.0039 31.6 6.4 42 233-274 289-335 (655)
49 PF06305 DUF1049: Protein of u 25.5 2E+02 0.0043 21.0 5.0 30 238-267 38-67 (68)
50 PF10256 Erf4: Golgin subfamil 25.3 1.4E+02 0.0031 24.3 4.6 56 230-285 54-111 (118)
51 PRK15422 septal ring assembly 25.2 1.6E+02 0.0036 24.2 4.8 28 242-269 5-32 (79)
52 cd01282 HTH_MerR-like_sg3 Heli 25.1 1.6E+02 0.0035 24.1 4.8 30 242-271 82-111 (112)
53 PF07206 Baculo_LEF-10: Baculo 25.0 94 0.002 25.1 3.3 32 12-43 27-61 (71)
54 PF05974 DUF892: Domain of unk 24.9 4.6E+02 0.01 22.8 8.3 59 190-267 2-61 (159)
55 PF05529 Bap31: B-cell recepto 24.3 1.2E+02 0.0027 26.7 4.3 34 238-271 158-191 (192)
56 PF06005 DUF904: Protein of un 24.2 1.7E+02 0.0037 23.1 4.6 27 245-271 22-48 (72)
57 PF10224 DUF2205: Predicted co 24.2 1.3E+02 0.0028 24.5 4.0 38 241-278 30-67 (80)
58 PF15556 Zwint: ZW10 interacto 24.0 3.4E+02 0.0075 26.3 7.3 19 180-198 25-43 (252)
59 COG4039 Predicted membrane pro 23.9 6.7 0.00014 32.4 -3.4 25 1-25 31-55 (86)
60 PF07334 IFP_35_N: Interferon- 23.9 1.3E+02 0.0029 24.4 4.0 28 243-270 2-29 (76)
61 PF04102 SlyX: SlyX; InterPro 23.7 1.7E+02 0.0037 22.4 4.5 33 243-275 20-52 (69)
62 PRK10884 SH3 domain-containing 23.3 1.4E+02 0.0031 27.7 4.6 33 242-274 133-165 (206)
63 PF08172 CASP_C: CASP C termin 23.1 3E+02 0.0065 26.3 6.9 35 243-277 1-35 (248)
64 PF08826 DMPK_coil: DMPK coile 22.7 1.9E+02 0.0041 22.4 4.5 29 241-269 32-60 (61)
65 PF07716 bZIP_2: Basic region 22.7 1.5E+02 0.0032 21.5 3.7 28 243-270 27-54 (54)
66 PF12777 MT: Microtubule-bindi 22.6 2E+02 0.0044 28.0 5.8 24 248-271 235-258 (344)
67 cd04775 HTH_Cfa-like Helix-Tur 22.6 2.7E+02 0.0059 22.4 5.6 30 242-271 72-101 (102)
68 PF07058 Myosin_HC-like: Myosi 22.5 4E+02 0.0086 27.2 7.7 68 193-273 17-84 (351)
69 PRK02119 hypothetical protein; 22.5 3.9E+02 0.0084 21.0 6.7 31 245-275 27-57 (73)
70 PRK02793 phi X174 lysis protei 22.3 3.8E+02 0.0083 20.9 6.7 33 245-277 26-58 (72)
71 PF04799 Fzo_mitofusin: fzo-li 22.3 4.2E+02 0.0091 24.5 7.3 43 229-271 112-160 (171)
72 PF11285 DUF3086: Protein of u 22.2 1.7E+02 0.0038 28.9 5.2 32 242-273 5-36 (283)
73 PF13815 Dzip-like_N: Iguana/D 22.0 4.1E+02 0.009 22.1 6.8 26 246-271 78-103 (118)
74 KOG1555 26S proteasome regulat 21.8 1.2E+02 0.0027 30.3 4.1 47 229-277 251-297 (316)
75 PF11336 DUF3138: Protein of u 21.7 98 0.0021 32.7 3.6 27 248-274 25-51 (514)
76 PF03980 Nnf1: Nnf1 ; InterPr 21.6 2.9E+02 0.0063 22.3 5.7 49 217-273 57-105 (109)
77 cd00089 HR1 Protein kinase C-r 21.6 1.3E+02 0.0029 22.7 3.5 30 241-270 42-71 (72)
78 PF12709 Kinetocho_Slk19: Cent 21.4 1.8E+02 0.0038 24.3 4.3 27 246-272 47-73 (87)
79 PF13094 CENP-Q: CENP-Q, a CEN 21.2 1.8E+02 0.0039 25.0 4.6 30 248-277 55-84 (160)
80 PF06156 DUF972: Protein of un 20.9 2E+02 0.0043 24.3 4.7 13 260-272 41-53 (107)
81 PF04102 SlyX: SlyX; InterPro 20.8 2.3E+02 0.0049 21.8 4.6 29 245-273 15-43 (69)
82 PRK04406 hypothetical protein; 20.3 4.4E+02 0.0096 20.9 6.6 29 246-274 30-58 (75)
83 PF11068 YlqD: YlqD protein; 20.3 2.7E+02 0.0058 24.3 5.5 36 239-274 18-53 (131)
84 COG3416 Uncharacterized protei 20.3 7.6E+02 0.016 24.0 8.8 49 246-294 46-94 (233)
85 KOG4634 Mitochondrial F1F0-ATP 20.2 3.8E+02 0.0082 23.2 6.1 47 220-271 17-76 (105)
86 PF07106 TBPIP: Tat binding pr 20.1 2E+02 0.0043 25.0 4.7 34 242-275 73-106 (169)
87 PF04380 BMFP: Membrane fusoge 20.0 1.6E+02 0.0035 23.3 3.7 35 235-269 44-78 (79)
No 1
>cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex. BRCC36 (BRCA1-A complex subunit BRCC36; BRCA1/BRCA2-containing complex subunit 36; BRCA1/BRCA2-containing complex subunit 3; BRCC3; BRISC complex subunit BRCC36; BRCC36 isopeptidase complex; Lys-63-specific deubiquitinase BRCC36) and BRCC36-like domains are members of JAMM/MPN+ deubiquitinases (DUBs), possibly with Zn2+-dependent ubiquitin isopeptidase activity. BRCC36 is part of the BRCA1/BRCA2/BARD1-containing nuclear complex that displays an E3 ubiquitin ligase activity. It is targeted to DNA damage foci after irradiation; RAP80 recruits the Abraxas-BRCC36-BRCA1-BARD1 complex to DNA double strand breaks (DSBs) for DNA repair through specific recognition of Lys 63-linked polyubiquitinated proteins by its tandem ubiquitin-interacting motifs. A new protein, MERIT40 (mediator of RAP80 interactions and targeting 40 kDa), also named NBA1 (new component of the BRCA1 A complex), exists in the same BRCA1-contai
Probab=100.00 E-value=7.4e-37 Score=281.52 Aligned_cols=129 Identities=44% Similarity=0.845 Sum_probs=122.1
Q ss_pred CcccccccceeEEEEeeecC-ccccccEEEEEEecCCCCccccccccccccCCCccccccccccccccccccccccccCC
Q 021219 1 MYQLLDTGFIGLIFSCFSED-ANKVGRIQVIAFQSSDGKQNHISKPIALLPVNKSTVIDLESSLSSSESLSARSGNVLAE 79 (316)
Q Consensus 1 myQ~ld~gfvGlIFScf~~d-~~k~griqviaFQs~~g~~~~~~~pi~~~p~~~~~~id~~ss~sss~~~~~~~~~~~~e 79 (316)
+||++|++|+|||||||.++ .+++|+++|.|||+.+|++
T Consensus 115 ~~q~~~p~~v~lIvS~~~~~~~~~~~~~~i~aFr~~~g~~---------------------------------------- 154 (244)
T cd08068 115 MYQMMDSGFVGLIFSCFNEDKSTKMGEVQVTCFQSVQGNK---------------------------------------- 154 (244)
T ss_pred HHHhhCCCcEEEEEEecCCccccccCCEEEEEEEecCCCC----------------------------------------
Confidence 58999999999999999988 8899999999999999876
Q ss_pred CCCcCCCcccccccccCCCCccccccccccccCCCCcccccCCCCCCCCCCCCcccCCCCCCCChHHHHHhhhcccCCCC
Q 021219 80 NPEQDTGDSKIVAGSWKGGGRTSELGGFFANVDANHPERARTGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMSG 159 (316)
Q Consensus 80 ~~~~d~~ds~~~~~~~k~~~r~~~~~~ff~~~d~n~~~~~~~~~~y~~~~~~~~~~~~d~~dms~~mqeA~hrs~ld~sg 159 (316)
+
T Consensus 155 -------------------------------------------------------------------------------~ 155 (244)
T cd08068 155 -------------------------------------------------------------------------------A 155 (244)
T ss_pred -------------------------------------------------------------------------------C
Confidence 7
Q ss_pred CceEEEeeeeeeecCCCccccCCcchhhHHHhHHHHHHHHHHHHHHHHhhccCCCCCccceeecchhhHhHHHHHHHHHh
Q 021219 160 AEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTSTYQASMCKLIEYCL 239 (316)
Q Consensus 160 gey~RkEVPL~VvP~~ti~k~~~~LeSlv~Lp~IL~qEE~eAY~kA~~qs~~~g~ldpLTkIHN~SVYT~SLC~LmE~~~ 239 (316)
|+|+|+||||+|+|+.+++++ ||+++++||+||+|||++||++|+.+ +..||||+|||++|||++||||||+|+
T Consensus 156 ~~~~~~e~pl~i~~~~~~~~~--~~~~~~~l~~~l~~e~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (244)
T cd08068 156 GQYERIEVPLEIVPTSTISEA--CLESLVELPEILYQEEEDAYNKALQS----CDLDPLTKIHNGSVYTKSLCHILETIS 229 (244)
T ss_pred CcceEEEeeeEEecCcccccc--CHHHHHHHHHHHHHHHHHHHHHHHhc----ccchHHHHHHhhHHHHHHHHHHHHHHH
Confidence 889999999999999999997 69999999999999999999999944 566799999999999999999999999
Q ss_pred hHHHHHHHHHHHHHH
Q 021219 240 SPAISALQDRLKENE 254 (316)
Q Consensus 240 ~PLLq~LEdRL~~Nk 254 (316)
+|+|++||+|+++|+
T Consensus 230 ~p~~~~l~~~~~~~~ 244 (244)
T cd08068 230 GPLLQLLEARLEQNK 244 (244)
T ss_pred hhHHHHHHHHHHhcC
Confidence 999999999999985
No 2
>KOG1555 consensus 26S proteasome regulatory complex, subunit RPN11 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.1e-25 Score=211.19 Aligned_cols=229 Identities=25% Similarity=0.301 Sum_probs=188.8
Q ss_pred CcccccccceeEEEEeeecCccccccEEEEEEecCCCCccccccccccccCCCccccccccccccccccccccccccCCC
Q 021219 1 MYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNHISKPIALLPVNKSTVIDLESSLSSSESLSARSGNVLAEN 80 (316)
Q Consensus 1 myQ~ld~gfvGlIFScf~~d~~k~griqviaFQs~~g~~~~~~~pi~~~p~~~~~~id~~ss~sss~~~~~~~~~~~~e~ 80 (316)
||+.+|.++.|++||||.|+.++|+++|++.|+..+|+.-- .+-...+.+++++.+|+.|..+|.+--.+.+.
T Consensus 76 vv~v~am~~sg~~is~~~e~~d~V~q~q~~~~l~~tGrp~~-------VVGWYHSHP~f~~wpS~vDi~tQ~syq~~~~r 148 (316)
T KOG1555|consen 76 VVDVFAMPQSGTGISKFVEAVDPVFQTQMMDLLKQTGRPEL-------VVGWYHSHPGFGCWPSLVDIDTQQSYQALSSR 148 (316)
T ss_pred eeeeeccccccceecccchhccHHHHHHHHHHHHhcCCcce-------EEeeccCCCCCCCCccccchhHHHHHhhhccC
Confidence 57899999999999999999999999999999999999822 24458889999999999999999998877665
Q ss_pred CCcCCCcccccccccCCCCccccccccccc-cCCCCcccccCCCCCCCCCCCCcccCCCCCCCChHHHHHhhhcccCCCC
Q 021219 81 PEQDTGDSKIVAGSWKGGGRTSELGGFFAN-VDANHPERARTGGNYQTGDLSNAIGDIDPMDMSESMQEAMHRSNLDMSG 159 (316)
Q Consensus 81 ~~~d~~ds~~~~~~~k~~~r~~~~~~ff~~-~d~n~~~~~~~~~~y~~~~~~~~~~~~d~~dms~~mqeA~hrs~ld~sg 159 (316)
.-.++.| ...++.|++..| .|+.+ ..++..+ ++-+.....+++|||+++|||++|+.|
T Consensus 149 ~~a~~v~----~i~S~~g~vv~d--~f~~In~~~~~~~----------~eprqtts~~~~m~~~~s~q~~~~g~n----- 207 (316)
T KOG1555|consen 149 AVAVVVD----PIQSPYGKVVPD--AFSSINPQWISPG----------GEPRQTTSNGGHMDMQESLQEDIHGLN----- 207 (316)
T ss_pred Ccceeee----cccCCCCCccCC--hhhhcCcccccCC----------CCCccccccccccccchhHHhHhhccC-----
Confidence 5555555 455899999877 68864 4665554 344556678999999999999999999
Q ss_pred CceEEEeeeeeeecCCCccccCCcchhhHHHhHHHHHHHHHHHHHHHHhhccCCCCCccceeecchhhHhHHHHHHHHHh
Q 021219 160 AEYVRKEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTSTYQASMCKLIEYCL 239 (316)
Q Consensus 160 gey~RkEVPL~VvP~~ti~k~~~~LeSlv~Lp~IL~qEE~eAY~kA~~qs~~~g~ldpLTkIHN~SVYT~SLC~LmE~~~ 239 (316)
.|.|+|||++|.|.......|.|++++.++++++|+||+++|+... .+..-|+++|| .+++. |+.++..
T Consensus 208 -~y~~~ei~~~v~~~~~~~~~nv~~~s~~~~~~~~y~e~~k~~~~~~------~~~~sL~~~~N-~~~~~--~k~~~~~- 276 (316)
T KOG1555|consen 208 -RYYRIEIPLHVLPYEQLMLLNVPLKSWKSLQDVLYEEKLKAYLQSV------PSMKSLSKVYN-KVCDV--CKQMSDF- 276 (316)
T ss_pred -ceEEEEeeEEechhhhhchhccchhhhhhcchhhHHHHHHHhhhhh------hHHHhHHHHHH-HHHHH--HhhccHH-
Confidence 8999999999999765555556899999999999999999998555 34567999999 77776 8887766
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHHHH--HHHHHHHH
Q 021219 240 SPAISALQDRLKEN-EIRLAMLTDE--AKSLESEA 271 (316)
Q Consensus 240 ~PLLq~LEdRL~~N-k~Rl~~Lq~E--keqL~~el 271 (316)
+++|+|+.++| |+.++....| .+.|.+++
T Consensus 277 ---~~~i~d~~~~~~kq~l~~~v~~~~~~nl~~~l 308 (316)
T KOG1555|consen 277 ---LLMIEDVGEQNPKQHLKEAVTELLSENLVQEL 308 (316)
T ss_pred ---HHHHHHhhhhhHHHHhHHHhhhhcccchhhcc
Confidence 99999999999 8888777777 56666655
No 3
>cd08067 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase. This family includes histone H2A deubiquitinase (Histone H2A DUB;MYSM1; myb-like, SWIRM and MPN domains 1; 2ADUB; 2A-DUB; KIAA19152ADUB, or KIAA1915/MYSM1), a member of JAMM/MPN+ deubiquitinases (DUBs), with possible Zn2+-dependent ubiquitin isopeptidase activity. It contains the SWIRM (Swi3p, Rsc8p and Moira), and SANT (SWI-SNF, ADA N-CoR, TFIIIB)/Myb domains; the SANT, but not the SWIRM, domain can bind directly to DNA. 2A-DUB is specific for monoubiquitinated H2A (uH2A), regulating transcription by coordinating histone acetylation and deubiquitination, and destabilizing the association of linker histone H1 with nucleosomes. 2A-DUB interacts with p/CAF (p300/CBP-associated factor) in a co-regulatory protein complex, where the status of acetylation of nucleosomal histones modulates its deubiquitinase activity. 2A-DUB is a positive regulator of androgen receptor (AR) transactivation activity on a reporter gene; it p
Probab=96.32 E-value=0.0022 Score=57.68 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=33.2
Q ss_pred Cccccccc-------ceeEEEEeeecCccccccEEEEEEecCCCCcc
Q 021219 1 MYQLLDTG-------FIGLIFSCFSEDANKVGRIQVIAFQSSDGKQN 40 (316)
Q Consensus 1 myQ~ld~g-------fvGlIFScf~~d~~k~griqviaFQs~~g~~~ 40 (316)
+||.|.+| |||+|+|+|+++.+ ...-+|.||+..+..-+
T Consensus 105 ~yQ~~~~~~~~~~~p~v~~I~~P~~~~~~-~~~s~i~~f~~~~~~~~ 150 (187)
T cd08067 105 DYQIMFKGSDSGYEPCVGLICSPYDRRNS-TPESQITCFWVMPPPEN 150 (187)
T ss_pred HHHhhccccccCCCCeEEEEEccccCCCC-CCCCcEEEEEEECCCCC
Confidence 49999997 99999999999876 34468899999988766
No 4
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=79.40 E-value=2.6 Score=32.31 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021219 245 ALQDRLKENEIRLAMLTDEAKSLESEAFK 273 (316)
Q Consensus 245 ~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~ 273 (316)
++|.||++-++||+..+.++++-+.++.+
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999988888888888887743
No 5
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=76.05 E-value=13 Score=36.98 Aligned_cols=80 Identities=13% Similarity=0.168 Sum_probs=57.1
Q ss_pred chhhHHHhHHHHHHHHHHHHHHHHhhccCCCCCccceeecch-----hhHhHHHHHHHHHhhHH-------HHHHHHHHH
Q 021219 184 LTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTS-----TYQASMCKLIEYCLSPA-------ISALQDRLK 251 (316)
Q Consensus 184 LeSlv~Lp~IL~qEE~eAY~kA~~qs~~~g~ldpLTkIHN~S-----VYT~SLC~LmE~~~~PL-------Lq~LEdRL~ 251 (316)
..++.++-.+=.+.=.++|.+++. .+.-+++|..- .|++.+-.+||..+..| |..+-.||.
T Consensus 227 v~s~re~~d~W~~~ae~~~~e~~~-------S~efak~~G~lvna~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ 299 (320)
T TIGR01834 227 VKTAKALYDLWVIAAEEAYAEVFA-------SEENAKVHGKFINALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQ 299 (320)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHc-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 455555555555555666766662 25555665432 68999999999999988 777778888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021219 252 ENEIRLAMLTDEAKSLESE 270 (316)
Q Consensus 252 ~Nk~Rl~~Lq~EkeqL~~e 270 (316)
+-+.|++.|++++++|+++
T Consensus 300 ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 300 QLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 8888888888888887765
No 6
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=73.73 E-value=5.8 Score=30.38 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLE 268 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~ 268 (316)
|..||.||+++++|++.-+.+.++.+
T Consensus 34 La~LE~rL~~ae~ra~~ae~~~~~~k 59 (60)
T PF11471_consen 34 LAALEQRLQAAEQRAQAAEARAKQAK 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88899999999999999998888754
No 7
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=68.63 E-value=27 Score=28.83 Aligned_cols=39 Identities=18% Similarity=0.150 Sum_probs=31.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021219 234 LIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESEAF 272 (316)
Q Consensus 234 LmE~~~~PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~ 272 (316)
.+-.+..=++.++.=|+++.+.+++.|++|+++|..|.+
T Consensus 9 ~~~~v~~~i~~y~~~k~~ka~~~~~kL~~en~qlk~Ek~ 47 (87)
T PF10883_consen 9 GVGAVVALILAYLWWKVKKAKKQNAKLQKENEQLKTEKA 47 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566788888999999999999999999988764
No 8
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=64.52 E-value=16 Score=28.71 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEAF 272 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~ 272 (316)
|+.|++|+.+--.+.++|+.|+..|.+++.
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~ 31 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEK 31 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999988875
No 9
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=62.17 E-value=76 Score=30.03 Aligned_cols=81 Identities=19% Similarity=0.221 Sum_probs=45.3
Q ss_pred HhHHHHH-------HHHHHHHHHHHhhccCCCCCccceeecch--hhHhHHHHHHH--HHhhHHHHHHHHHHHHHHHHHH
Q 021219 190 LQRVLYE-------EERAAYNQAIMQNMSDGKVHPLTYIHHTS--TYQASMCKLIE--YCLSPAISALQDRLKENEIRLA 258 (316)
Q Consensus 190 Lp~IL~q-------EE~eAY~kA~~qs~~~g~ldpLTkIHN~S--VYT~SLC~LmE--~~~~PLLq~LEdRL~~Nk~Rl~ 258 (316)
+.+.+.+ ||..+|+.+..... .+..++....+-.. .....|=.|-+ .=+.=.|..|+.+.++...+|+
T Consensus 154 i~e~I~~~~~d~~de~~~~wE~aQ~rkg-~~~~~~~~~~~~~~~ip~~tpLP~L~~~~~rL~~~l~~le~~~~~~~~~l~ 232 (254)
T PF15458_consen 154 IEEAINDDDDDSEDEERAEWEAAQLRKG-MDGLSDEKDRYKPPPIPKITPLPSLSECLERLRESLSSLEDSKSQLQQQLE 232 (254)
T ss_pred HHHHHHhcccccchhhHHHHHHHHHHhh-ccCCccchhccCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666776 78889998774432 33333111111111 11111111111 1122235788999999999999
Q ss_pred HHHHHHHHHHHHH
Q 021219 259 MLTDEAKSLESEA 271 (316)
Q Consensus 259 ~Lq~EkeqL~~el 271 (316)
.|+.|++.|...-
T Consensus 233 ~l~~E~~~I~~re 245 (254)
T PF15458_consen 233 SLEKEKEEIEERE 245 (254)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887653
No 10
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=58.63 E-value=51 Score=27.37 Aligned_cols=48 Identities=13% Similarity=0.037 Sum_probs=35.9
Q ss_pred hHHHHHHHHHhhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 021219 229 ASMCKLIEYCLSPA---------ISALQDRLKENEIRLAMLTDEAKSLESEAFKGSD 276 (316)
Q Consensus 229 ~SLC~LmE~~~~PL---------Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~gs~ 276 (316)
.-++-++-++.-++ +.-++.++++-+.+++.|+.+.++|.+|+.....
T Consensus 6 ~vll~ll~~l~y~l~~g~~G~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 6 LLLLALLVWLQYSLWFGKNGILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34555666666665 4457788888899999999999999999976654
No 11
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=54.58 E-value=35 Score=25.26 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021219 244 SALQDRLKENEIRLAMLTDEAKSLESEAFKG 274 (316)
Q Consensus 244 q~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~g 274 (316)
..+...+++.+.+++.|+.|.++|++++...
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466778888888888888888888888665
No 12
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=53.52 E-value=69 Score=23.45 Aligned_cols=40 Identities=25% Similarity=0.110 Sum_probs=24.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021219 232 CKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESEAFK 273 (316)
Q Consensus 232 C~LmE~~~~PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~ 273 (316)
|=++-.+++-++.+. +.-..+.+++.++++.++|++|+.+
T Consensus 27 ~f~~G~llg~l~~~~--~~~~~r~~~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 27 AFLLGALLGWLLSLP--SRLRLRRRIRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444433332 2245667778899999999998854
No 13
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=53.37 E-value=22 Score=37.29 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 021219 245 ALQDRLKENEIRLAMLTDEAKSLESEAFKGSD 276 (316)
Q Consensus 245 ~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~gs~ 276 (316)
+.-+.++..| +|++|++|.++|++++....+
T Consensus 22 a~~~~~~~~q-kie~L~kql~~Lk~q~~~l~~ 52 (489)
T PF11853_consen 22 AMADDIDLLQ-KIEALKKQLEELKAQQDDLND 52 (489)
T ss_pred hhhhhhHHHH-HHHHHHHHHHHHHHhhccccc
Confidence 4445555555 788888888888888754333
No 14
>TIGR03782 Bac_Flav_CT_J Bacteroides conjugative transposon TraJ protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage. This family is related conjugation system proteins in the Proteobacteria, including TrbL of Agrobacterium Ti plasmids and VirB6.
Probab=52.56 E-value=22 Score=35.55 Aligned_cols=38 Identities=24% Similarity=0.381 Sum_probs=35.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021219 235 IEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESEAF 272 (316)
Q Consensus 235 mE~~~~PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~ 272 (316)
+..+++|+.+.=+.=++.++..++.|+++|++|++|..
T Consensus 79 in~v~spvv~gT~~m~~~q~~dl~~l~~qkd~L~~e~~ 116 (322)
T TIGR03782 79 INGVLSPVVQGTHSMLEGQTLDMNRYREQKDKLEYEAM 116 (322)
T ss_pred hhhhhHHHHHhHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence 66889999999999999999999999999999999984
No 15
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=48.58 E-value=47 Score=26.42 Aligned_cols=36 Identities=33% Similarity=0.412 Sum_probs=31.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021219 237 YCLSPAISALQDRLKENEIRLAMLTDEAKSLESEAF 272 (316)
Q Consensus 237 ~~~~PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~ 272 (316)
....|.+..|+++++.-+.+++.++.+++.+.++++
T Consensus 66 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 66 ESDSPELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778999999999999999999999999998874
No 16
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=46.64 E-value=50 Score=25.58 Aligned_cols=32 Identities=31% Similarity=0.309 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021219 241 PAISALQDRLKENEIRLAMLTDEAKSLESEAF 272 (316)
Q Consensus 241 PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~ 272 (316)
-....++.||+....|...|..|.+.|.+++.
T Consensus 25 ~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 25 SANLAFESKLQEAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888888888888888888888874
No 17
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=43.42 E-value=28 Score=32.69 Aligned_cols=55 Identities=33% Similarity=0.429 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHhhcc---CCCCCccceeecchhhHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 021219 194 LYEEERAAYNQAIMQNMS---DGKVHPLTYIHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAML--TDEAKSLE 268 (316)
Q Consensus 194 L~qEE~eAY~kA~~qs~~---~g~ldpLTkIHN~SVYT~SLC~LmE~~~~PLLq~LEdRL~~Nk~Rl~~L--q~EkeqL~ 268 (316)
|.+||-..|...| |.-+ ...+||||.+ .+|+|..+-..|.++| +.|.+..+
T Consensus 14 Lt~~Ew~RY~~Lm-qG~rG~~SPgLdPLtaL-----------------------GIeArsd~ERrryAEl~vk~E~~rve 69 (200)
T TIGR03759 14 LTEDEWQRYQQLM-QGPRGVYSPGLDPLTAL-----------------------GIEARSDEERRRYAELWVKQEAQRVE 69 (200)
T ss_pred CCHHHHHHHHHHh-cCCccCcCCCCChhhhh-----------------------ccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 5678888998877 3331 4567888754 4577777777777776 45666677
Q ss_pred HHHh
Q 021219 269 SEAF 272 (316)
Q Consensus 269 ~el~ 272 (316)
++|+
T Consensus 70 keLA 73 (200)
T TIGR03759 70 KELA 73 (200)
T ss_pred HHHH
Confidence 7753
No 18
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=43.04 E-value=61 Score=24.72 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEAFKGSD 276 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~gs~ 276 (316)
+..+...++..+.+++.|+.|..+|+.|+...+.
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3456777888888999999999999999976553
No 19
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=40.34 E-value=68 Score=23.77 Aligned_cols=29 Identities=28% Similarity=0.376 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
+..||+++..-+.....|+.+...|..++
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~ 56 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEI 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555554
No 20
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=40.22 E-value=68 Score=25.35 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLES 269 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~ 269 (316)
+.-||.|++..--.++.|+.|.++|.+
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke 32 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKE 32 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444
No 21
>smart00338 BRLZ basic region leucin zipper.
Probab=40.14 E-value=75 Score=23.53 Aligned_cols=31 Identities=23% Similarity=0.255 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021219 242 AISALQDRLKENEIRLAMLTDEAKSLESEAF 272 (316)
Q Consensus 242 LLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~ 272 (316)
-+..||++++.-+.....|+.+...|..++.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~ 57 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELE 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777777777664
No 22
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=38.81 E-value=1.1e+02 Score=25.61 Aligned_cols=35 Identities=29% Similarity=0.390 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021219 239 LSPAISALQDRLKENEIRLAMLTDEAKSLESEAFK 273 (316)
Q Consensus 239 ~~PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~ 273 (316)
+.--+..|+++++..+...+.|+.+.+++.++++.
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~ 112 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKK 112 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456777788887777777777777777777653
No 23
>PF15449 Retinal: Retinal protein
Probab=38.65 E-value=1.2e+02 Score=35.27 Aligned_cols=72 Identities=26% Similarity=0.396 Sum_probs=54.1
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHhhccCCCCCccceeecchhhHhHHH-----HHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 021219 185 TSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTSTYQASMC-----KLIEYCLSPAISALQDRLKENEIRLAM 259 (316)
Q Consensus 185 eSlv~Lp~IL~qEE~eAY~kA~~qs~~~g~ldpLTkIHN~SVYT~SLC-----~LmE~~~~PLLq~LEdRL~~Nk~Rl~~ 259 (316)
+.=||.|+.|..--+.||- . +|| +-+-|-+=|| -++..++-||+..|-=|+++-++-|.+
T Consensus 177 e~KVDFPE~LVkAHq~aY~--y--------L~~-----~lskYeail~~~~qa~qtq~~lq~mv~fl~l~feEinqll~e 241 (1287)
T PF15449_consen 177 EGKVDFPEPLVKAHQHAYA--Y--------LHP-----SLSKYEAILCLAHQATQTQELLQPMVSFLLLRFEEINQLLGE 241 (1287)
T ss_pred cccCcCcHHHHHHHHHHHH--H--------hcc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447789999988888883 2 121 1223433332 345567899999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 021219 260 LTDEAKSLESEA 271 (316)
Q Consensus 260 Lq~EkeqL~~el 271 (316)
+-++=|.|++|+
T Consensus 242 i~~dGe~ll~ev 253 (1287)
T PF15449_consen 242 IAKDGEVLLKEV 253 (1287)
T ss_pred HHHHHHHHHHHh
Confidence 999999999998
No 24
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=38.12 E-value=88 Score=22.63 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021219 252 ENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 252 ~Nk~Rl~~Lq~EkeqL~~el 271 (316)
..+.++..|+.+..+|..++
T Consensus 29 ~le~~~~~L~~en~~L~~~i 48 (54)
T PF07716_consen 29 ELEQEVQELEEENEQLRQEI 48 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444
No 25
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.06 E-value=1.3e+02 Score=29.02 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 245 ALQDRLKENEIRLAMLTDEAKSLESE 270 (316)
Q Consensus 245 ~LEdRL~~Nk~Rl~~Lq~EkeqL~~e 270 (316)
-+|.-|+..+.+|++|++..+.|++.
T Consensus 52 iqE~ALk~a~~~i~eLe~ri~~lq~~ 77 (233)
T COG3416 52 IQEQALKKASTQIKELEKRIAILQAG 77 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35777788888888888888888876
No 26
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=35.95 E-value=3.4e+02 Score=25.50 Aligned_cols=100 Identities=22% Similarity=0.273 Sum_probs=66.9
Q ss_pred EeeeeeeecCCCccccCCcchhhHHHhHHHHHHHHHHHHHHHHhhccCCCCCccceeecch---hhHhHHHHHHHHHhhH
Q 021219 165 KEIPLHVLPTSSLLKLDSPLTSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTS---TYQASMCKLIEYCLSP 241 (316)
Q Consensus 165 kEVPL~VvP~~ti~k~~~~LeSlv~Lp~IL~qEE~eAY~kA~~qs~~~g~ldpLTkIHN~S---VYT~SLC~LmE~~~~P 241 (316)
..+|++|+ |.|++ .+..+.+.-.-|-+||++ ++. |-.-|........ .+...+-.|++.+..=
T Consensus 68 ~~~PVYvv----~Tk~D-~l~GF~ef~~~L~~~~r~---q~l------G~t~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 133 (266)
T PF14331_consen 68 VRLPVYVV----FTKCD-LLPGFDEFFSDLSEEERE---QVL------GFTFPYDEDADGDAWAWFDEEFDELVARLNAR 133 (266)
T ss_pred CCCCeEee----eECCC-cccCHHHHHHhCCHHHHh---CCc------ccccCCccccccchHHHHHHHHHHHHHHHHHH
Confidence 46899998 44443 678888888889988876 223 4555555555554 4777777777777666
Q ss_pred HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 021219 242 AISALQDR--------LKENEIRLAMLTDEAKSLESEAFKGSDSS 278 (316)
Q Consensus 242 LLq~LEdR--------L~~Nk~Rl~~Lq~EkeqL~~el~~gs~~~ 278 (316)
++..|..- +-.==.+++.|+.-..++.+.++..+.-.
T Consensus 134 ~~~~l~~~~~~~~r~~l~~FP~ql~~L~~~L~~fl~~~f~~~~~~ 178 (266)
T PF14331_consen 134 VLERLAQERDAERRAALFSFPRQLAALRPPLREFLEELFRPNPYQ 178 (266)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 66655432 22223577888888888888888766544
No 27
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=34.37 E-value=64 Score=25.59 Aligned_cols=26 Identities=35% Similarity=0.381 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC
Q 021219 251 KENEIRLAMLTDEAKSLESEAFKGSD 276 (316)
Q Consensus 251 ~~Nk~Rl~~Lq~EkeqL~~el~~gs~ 276 (316)
.+-..||+-|+.|.+.|++|+++...
T Consensus 28 ~El~eRIalLq~EIeRlkAe~~kK~~ 53 (65)
T COG5509 28 AELEERIALLQAEIERLKAELAKKKA 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34567888999999999999876543
No 28
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=32.65 E-value=1.9e+02 Score=23.42 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=36.9
Q ss_pred cchhhHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021219 223 HTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESEAF 272 (316)
Q Consensus 223 N~SVYT~SLC~LmE~~~~PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~ 272 (316)
.+-||-.-.--+++.-..=++..|++|++.-+.+++.|+.+.+.|++++.
T Consensus 45 d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~ 94 (105)
T cd00632 45 DAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLK 94 (105)
T ss_pred cchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566555555566666667888899999888888888888888888774
No 29
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=32.42 E-value=91 Score=29.75 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 021219 240 SPAISALQDRLKENEIRLAMLTDEAKSLESEAFKGS 275 (316)
Q Consensus 240 ~PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~gs 275 (316)
.+-++.|++........+..|+.|+..|+++|.+.+
T Consensus 104 ~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~ 139 (232)
T KOG2483|consen 104 LEHIQSLERKSATQQQDIEDLSRENRKLKARLEQLS 139 (232)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455788999999999999999999999999998654
No 30
>PF01621 Fusion_gly_K: Cell fusion glycoprotein K; InterPro: IPR002567 Human herpesvirus 1 (HHV-1) (Human herpes simplex virus 1) glycoprotein K (gK) plays an essential role in viral replication and cell fusion. gK is a very hydrophobic membrane protein that contains a signal sequence and several hydrophobic regions. gK contains three transmembrane domains (amino acids 125-139, 226-239, and 311-325) and another hydrophobic domain (amino acids 241-265), which is relatively less hydrophobic and much longer compared with the transmembrane sequences located in the extracellular loop. The domains may interact with each other to form a complex tertiary structure that is critical for the biological function of gK [].; GO: 0007155 cell adhesion, 0016020 membrane
Probab=32.16 E-value=40 Score=33.91 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=29.0
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHhhccCCCCCccceeecc
Q 021219 185 TSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHT 224 (316)
Q Consensus 185 eSlv~Lp~IL~qEE~eAY~kA~~qs~~~g~ldpLTkIHN~ 224 (316)
-.++++.+.|| |-+.+++++-+ ..+.||+|+.|+-
T Consensus 177 ~pYTK~arlmc--Els~~R~als~---~F~~DPitFl~~h 211 (337)
T PF01621_consen 177 YPYTKMARLMC--ELSIQRQALSR---IFKADPITFLYRH 211 (337)
T ss_pred CChHHHHHHHH--HHHHHHHHHHH---HhccCCCeeeeeC
Confidence 35788999999 88899999854 5678999998873
No 31
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=32.03 E-value=1.4e+02 Score=24.42 Aligned_cols=51 Identities=20% Similarity=0.269 Sum_probs=38.7
Q ss_pred cchhhHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021219 223 HTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESEAFK 273 (316)
Q Consensus 223 N~SVYT~SLC~LmE~~~~PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~ 273 (316)
.+-||-.-.-=+|+.-..=++..|++|++.-+.+++.|+++.+.|++++..
T Consensus 49 d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e 99 (110)
T TIGR02338 49 DTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKE 99 (110)
T ss_pred cchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666555556666666678889999999999999999888888887753
No 32
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=31.60 E-value=1.2e+02 Score=29.74 Aligned_cols=55 Identities=20% Similarity=0.343 Sum_probs=42.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCC--CCCCCCCC
Q 021219 233 KLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESEAFK--GSDSSL--SSPHHSPS 287 (316)
Q Consensus 233 ~LmE~~~~PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~--gs~~~~--~~p~~~~~ 287 (316)
..++.++.=+...+.+|+++|+.||+.|++-.+.+++++.+ |+.... -||.+.+.
T Consensus 28 ~~L~~v~~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~gs~kAi~vfs~akyP~ 86 (297)
T PF11945_consen 28 EYLDKVSNDIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQGSKKAITVFSPAKYPA 86 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccEEEeCcccCCC
Confidence 34566777788899999999999999999999999998874 443332 46666644
No 33
>PRK09343 prefoldin subunit beta; Provisional
Probab=30.74 E-value=1.9e+02 Score=24.48 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=36.6
Q ss_pred Cccceeec-chhhHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021219 216 HPLTYIHH-TSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESEAF 272 (316)
Q Consensus 216 dpLTkIHN-~SVYT~SLC~LmE~~~~PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~ 272 (316)
+.|..+=- +-||-.-.-=+|..=..=+...|++|++..+.+|+.|+++.+.|++.+.
T Consensus 45 ~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~ 102 (121)
T PRK09343 45 EELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLK 102 (121)
T ss_pred HHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433 3466443333333333334677899999999999999888888888774
No 34
>PHA03276 envelope glycoprotein K; Provisional
Probab=30.19 E-value=92 Score=31.49 Aligned_cols=34 Identities=24% Similarity=0.445 Sum_probs=28.5
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHhhccCCCCCccceeec
Q 021219 185 TSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHH 223 (316)
Q Consensus 185 eSlv~Lp~IL~qEE~eAY~kA~~qs~~~g~ldpLTkIHN 223 (316)
-.++++.+.|| |.+.+++++- +....||+++.++
T Consensus 176 ~~YTK~arlmc--E~s~~R~als---~~F~~DPitFl~~ 209 (337)
T PHA03276 176 YPYTKITRLLC--ELSVQRQSLV---EIFEADPVTFLYH 209 (337)
T ss_pred CChHHHHHHHH--HHHHHHHHHH---HhhccCCceEeee
Confidence 46788999999 8889999884 4678899999874
No 35
>PHA03278 envelope glycoprotein K; Provisional
Probab=30.03 E-value=49 Score=33.44 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=28.8
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHhhccCCCCCccceeec
Q 021219 185 TSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHH 223 (316)
Q Consensus 185 eSlv~Lp~IL~qEE~eAY~kA~~qs~~~g~ldpLTkIHN 223 (316)
-.++++.+.|| |.+.+++++- ++...||+|+.++
T Consensus 177 ~~YTK~arlmc--Els~~R~als---r~F~~DPItFl~~ 210 (347)
T PHA03278 177 CTYTKMARLMC--ELSIRRNALS---RDFKEDPITFAFR 210 (347)
T ss_pred CChHHHHHHHH--HHHHHHHHHH---HhhccCCceeeee
Confidence 35788999999 8889999884 4688999999876
No 36
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=29.36 E-value=1.5e+02 Score=21.88 Aligned_cols=29 Identities=31% Similarity=0.381 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
+..|+.....-+.++..|+.+...|..++
T Consensus 35 ~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 35 VEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44566666666667777777777776654
No 37
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=28.94 E-value=2.9e+02 Score=22.18 Aligned_cols=36 Identities=31% Similarity=0.281 Sum_probs=19.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 236 EYCLSPAISALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 236 E~~~~PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
+.-+....+.++.+.+....+++++..+.+.|++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~ 118 (120)
T PF11740_consen 83 EEELEAARAELEQERAAAEAELAEAEAQAEELEAEL 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444555555555555555555555555554
No 38
>PRK09737 EcoKI restriction-modification system protein HsdS; Provisional
Probab=28.92 E-value=1.7e+02 Score=28.02 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCC
Q 021219 253 NEIRLAMLTDEAKSLESEAFKGSDS 277 (316)
Q Consensus 253 Nk~Rl~~Lq~EkeqL~~el~~gs~~ 277 (316)
.+..++.|++-++.|++++|+|--.
T Consensus 396 ~~~~l~~L~~lKqslLqk~ftG~l~ 420 (461)
T PRK09737 396 VNNALARVNNLTQSILAKAFRGELT 420 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccc
Confidence 4667899999999999999987643
No 39
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=28.71 E-value=91 Score=30.98 Aligned_cols=30 Identities=20% Similarity=0.213 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 242 AISALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 242 LLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
-|+.||+|+++-|.|+..|++|..-|.+-+
T Consensus 256 e~~~Le~rN~~LK~qa~~lerEI~ylKqli 285 (294)
T KOG4571|consen 256 ELEGLEKRNEELKDQASELEREIRYLKQLI 285 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378899999999999999999988776654
No 40
>PHA03275 envelope glycoprotein K; Provisional
Probab=28.69 E-value=54 Score=33.12 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=28.8
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHhhccCCCCCccceeecc
Q 021219 185 TSFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHT 224 (316)
Q Consensus 185 eSlv~Lp~IL~qEE~eAY~kA~~qs~~~g~ldpLTkIHN~ 224 (316)
-.++++.+.|| |.+.+++++- +....||++++++-
T Consensus 175 ~~YTK~arllc--Els~~R~als---~~F~~DPItFl~~h 209 (340)
T PHA03275 175 TPYTKLARLLC--EVSLRRVALS---KTFKRDPIGFLCEH 209 (340)
T ss_pred CChHHHHHHHH--HHHHHHHHHH---HhhccCCcEEeeeC
Confidence 45788999999 8889999884 46788999998653
No 41
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=28.11 E-value=3.1e+02 Score=29.01 Aligned_cols=25 Identities=12% Similarity=0.250 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 021219 248 DRLKENEIRLAMLTDEAKSLESEAF 272 (316)
Q Consensus 248 dRL~~Nk~Rl~~Lq~EkeqL~~el~ 272 (316)
..++..+.+|+.|+.|.++|++++.
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 7888888999999999999999984
No 42
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=27.61 E-value=1.8e+02 Score=22.78 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
+..|.+++.+-+.|..+|+.|..-|.+..
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56788888888888888888888777665
No 43
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=27.27 E-value=1.7e+02 Score=22.73 Aligned_cols=30 Identities=30% Similarity=0.431 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 242 AISALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 242 LLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
++..|+++.+.-+.++..|+.+.+.|++++
T Consensus 63 ~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l 92 (106)
T PF01920_consen 63 AIEELEERIEKLEKEIKKLEKQLKYLEKKL 92 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666665555555554
No 44
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=27.22 E-value=2.4e+02 Score=21.94 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=19.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 237 YCLSPAISALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 237 ~~~~PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
.++.|.|..|...+++.+..++.|+++...+.+|.
T Consensus 15 i~l~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~ 49 (90)
T PF06103_consen 15 IFLIKVLKKLKKTLDEVNKTIDTLQEQVDPITKEI 49 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34445555555555555555555555555555554
No 45
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=26.99 E-value=91 Score=32.76 Aligned_cols=11 Identities=45% Similarity=0.534 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 021219 261 TDEAKSLESEA 271 (316)
Q Consensus 261 q~EkeqL~~el 271 (316)
++|.++|..+.
T Consensus 115 ~~~~~ql~~~~ 125 (472)
T TIGR03752 115 TKEIEQLKSER 125 (472)
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 46
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=26.56 E-value=1.2e+02 Score=22.36 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSL 267 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL 267 (316)
++.|+.++++-+.+.+.|+.|.+.|
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667777777777777777777777
No 47
>PRK11239 hypothetical protein; Provisional
Probab=26.24 E-value=1.1e+02 Score=29.08 Aligned_cols=29 Identities=31% Similarity=0.300 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
...||+|+..-+.++++|+.+.++|..++
T Consensus 185 ~~~Le~rv~~Le~eva~L~~~l~~l~~~~ 213 (215)
T PRK11239 185 DGDLQARVEALEIEVAELKQRLDSLLAHL 213 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45699999999999999999999998876
No 48
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=25.66 E-value=1.8e+02 Score=31.59 Aligned_cols=42 Identities=19% Similarity=0.121 Sum_probs=34.3
Q ss_pred HHHHHHhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021219 233 KLIEYCLSP-----AISALQDRLKENEIRLAMLTDEAKSLESEAFKG 274 (316)
Q Consensus 233 ~LmE~~~~P-----LLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~g 274 (316)
.=+.+|.+= .++.||.||+.-...-++|+.|...|.++|+..
T Consensus 289 NResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l 335 (655)
T KOG4343|consen 289 NRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDEL 335 (655)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 345666654 488999999999999999999999999998743
No 49
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.46 E-value=2e+02 Score=21.03 Aligned_cols=30 Identities=23% Similarity=0.266 Sum_probs=23.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 238 CLSPAISALQDRLKENEIRLAMLTDEAKSL 267 (316)
Q Consensus 238 ~~~PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL 267 (316)
+..|..--+..+++.-+.+++.|++|.++|
T Consensus 38 ~~~~~~~~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 38 LSLPSRLRLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555667788888888999999999886
No 50
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=25.30 E-value=1.4e+02 Score=24.33 Aligned_cols=56 Identities=25% Similarity=0.234 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 021219 230 SMCKLIEYCLSPAISALQDRL--KENEIRLAMLTDEAKSLESEAFKGSDSSLSSPHHS 285 (316)
Q Consensus 230 SLC~LmE~~~~PLLq~LEdRL--~~Nk~Rl~~Lq~EkeqL~~el~~gs~~~~~~p~~~ 285 (316)
..+.+++.+++.+.-++..-+ -+.+..+++|++-.+++-+++++...-..-+|++.
T Consensus 54 ~~~~~~~~~l~~lt~~l~~~~~~~~~~~~~~~le~~l~~~N~~~~~~~gi~ii~pr~~ 111 (118)
T PF10256_consen 54 SWRNIIENILGCLTLGLSSLCFKTHYKRKLRELEKYLEQLNEELFKPRGIKIISPRRS 111 (118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcEEEchhHc
Confidence 456777777777766655432 34555677777777777776654443334455553
No 51
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=25.16 E-value=1.6e+02 Score=24.16 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 242 AISALQDRLKENEIRLAMLTDEAKSLES 269 (316)
Q Consensus 242 LLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~ 269 (316)
++.-||.|+++.--.|+-|+-|.++|..
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKe 32 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKE 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555565555554444444444444433
No 52
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=25.08 E-value=1.6e+02 Score=24.08 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 242 AISALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 242 LLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
+.+.|++++++-+.++++|+...+.|...+
T Consensus 82 ~~~~l~~~~~~l~~~i~~L~~~~~~L~~~l 111 (112)
T cd01282 82 LLAVLRRELARIDRQIADLTRSRDRLDAYL 111 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788999999999999998888887765
No 53
>PF07206 Baculo_LEF-10: Baculovirus late expression factor 10 (LEF-10); InterPro: IPR009855 This family consists of several Baculovirus specific late expression factor 10 (LEF-10) sequences. LEF-10 is thought to be a late expressed structural protein although its exact function is unknown [].
Probab=24.95 E-value=94 Score=25.07 Aligned_cols=32 Identities=19% Similarity=0.477 Sum_probs=23.3
Q ss_pred EEEEeeecCccccccE---EEEEEecCCCCccccc
Q 021219 12 LIFSCFSEDANKVGRI---QVIAFQSSDGKQNHIS 43 (316)
Q Consensus 12 lIFScf~~d~~k~gri---qviaFQs~~g~~~~~~ 43 (316)
|||=+|..+.+.+-++ .|-|||+..+.+..|+
T Consensus 27 ii~nVvd~~~~~i~~~C~GeI~~~qt~~~~~~~ms 61 (71)
T PF07206_consen 27 IILNVVDQESGEIKPVCLGEIDAFQTDQDDQEAMS 61 (71)
T ss_pred EEEEEEeCCCCceeeeEeeeecceecCCccccccc
Confidence 6999999887765444 3567888777777773
No 54
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=24.92 E-value=4.6e+02 Score=22.80 Aligned_cols=59 Identities=31% Similarity=0.416 Sum_probs=42.9
Q ss_pred HhHHHHHHHHHHHHHHHHhhccCCCCCccceeecchhhHhHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 021219 190 LQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTSTYQASMCKLIEYCLSPAISA-LQDRLKENEIRLAMLTDEAKSL 267 (316)
Q Consensus 190 Lp~IL~qEE~eAY~kA~~qs~~~g~ldpLTkIHN~SVYT~SLC~LmE~~~~PLLq~-LEdRL~~Nk~Rl~~Lq~EkeqL 267 (316)
|.+++..+-+++|. +-.| ....|.++.+.+..|-|.. |+..+.+.+.+++.|++-.+.|
T Consensus 2 l~~~~~~~L~d~y~-aE~q------------------~~~~l~~~~~~a~~~~L~~~l~~h~~eT~~q~~rLe~~~~~l 61 (159)
T PF05974_consen 2 LRDLFIDELRDLYS-AEKQ------------------LLKALPKLAEAASSPELKAALEEHLEETEQQIERLEQIFEAL 61 (159)
T ss_dssp HHHHHHHHHHHHHH-HHHH------------------HHHHHHHHHHH-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH-HHHH------------------HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55667777777775 3322 3578899999999997754 8899999999988887765544
No 55
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=24.32 E-value=1.2e+02 Score=26.74 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=22.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 238 CLSPAISALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 238 ~~~PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
-...=++.|++.++..+..++.|+++.+.|++|+
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344566677777777777777777777777664
No 56
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=24.20 E-value=1.7e+02 Score=23.11 Aligned_cols=27 Identities=26% Similarity=0.222 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 245 ALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 245 ~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
.|+-++++-+.+-..|+++.++|.++.
T Consensus 22 ~Lq~e~eeLke~n~~L~~e~~~L~~en 48 (72)
T PF06005_consen 22 LLQMENEELKEKNNELKEENEELKEEN 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344444444444333333344444443
No 57
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=24.17 E-value=1.3e+02 Score=24.51 Aligned_cols=38 Identities=26% Similarity=0.198 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 021219 241 PAISALQDRLKENEIRLAMLTDEAKSLESEAFKGSDSS 278 (316)
Q Consensus 241 PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~gs~~~ 278 (316)
=.|..|.+|+...+..-..|+.|.+-|++=+-..+.++
T Consensus 30 ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s 67 (80)
T PF10224_consen 30 DSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSSS 67 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35788999999999999999999999999887766654
No 58
>PF15556 Zwint: ZW10 interactor
Probab=23.99 E-value=3.4e+02 Score=26.31 Aligned_cols=19 Identities=37% Similarity=0.322 Sum_probs=13.4
Q ss_pred cCCcchhhHHHhHHHHHHH
Q 021219 180 LDSPLTSFTDLQRVLYEEE 198 (316)
Q Consensus 180 ~~~~LeSlv~Lp~IL~qEE 198 (316)
+|+.|..+.=|+..|.+|+
T Consensus 25 LcSQLQVvdFLqnFLaqed 43 (252)
T PF15556_consen 25 LCSQLQVVDFLQNFLAQED 43 (252)
T ss_pred HHHHHHHHHHHHHHHhcCc
Confidence 5656666666888888776
No 59
>COG4039 Predicted membrane protein [Function unknown]
Probab=23.92 E-value=6.7 Score=32.36 Aligned_cols=25 Identities=36% Similarity=0.503 Sum_probs=21.6
Q ss_pred CcccccccceeEEEEeeecCccccc
Q 021219 1 MYQLLDTGFIGLIFSCFSEDANKVG 25 (316)
Q Consensus 1 myQ~ld~gfvGlIFScf~~d~~k~g 25 (316)
|+-+|+.|||++|-+|.|=|...+|
T Consensus 31 m~aLl~~Gmi~~iaa~~YLDvA~a~ 55 (86)
T COG4039 31 MIALLEIGMICAIAACGYLDVAAAG 55 (86)
T ss_pred HHHHHhcchhhhhhhhhhhHHHHHH
Confidence 6788999999999999998876655
No 60
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=23.90 E-value=1.3e+02 Score=24.37 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESE 270 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~e 270 (316)
|..|..-..+-+.+|+.|+.|++++.++
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555666677777777777777666
No 61
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=23.67 E-value=1.7e+02 Score=22.43 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEAFKGS 275 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~gs 275 (316)
+..|-+-+...+.+|..|+++.+.|.+++....
T Consensus 20 ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 20 IEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555666677778888888888888886654
No 62
>PRK10884 SH3 domain-containing protein; Provisional
Probab=23.28 E-value=1.4e+02 Score=27.67 Aligned_cols=33 Identities=9% Similarity=0.110 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021219 242 AISALQDRLKENEIRLAMLTDEAKSLESEAFKG 274 (316)
Q Consensus 242 LLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~g 274 (316)
.+..|+.++++-+.+++.++.|.+.|++++...
T Consensus 133 ~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 133 VINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355588888888888888888888888877543
No 63
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=23.08 E-value=3e+02 Score=26.26 Aligned_cols=35 Identities=29% Similarity=0.290 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEAFKGSDS 277 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~gs~~ 277 (316)
|+.|+.++...+.+++++++=.++||..|.+....
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46788888888888888888888888888765544
No 64
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=22.74 E-value=1.9e+02 Score=22.44 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 241 PAISALQDRLKENEIRLAMLTDEAKSLES 269 (316)
Q Consensus 241 PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~ 269 (316)
-=|+..+.|.+.-...|+.|+++.++|..
T Consensus 32 ~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 32 SKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34677899999999999999999999865
No 65
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=22.70 E-value=1.5e+02 Score=21.47 Aligned_cols=28 Identities=29% Similarity=0.287 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESE 270 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~e 270 (316)
.+.|+.++..-+.....|+.+.+.|++|
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4567777777777777788887777765
No 66
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=22.62 E-value=2e+02 Score=27.97 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 248 DRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 248 dRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
++|++.+..++.|+.+.++|+.++
T Consensus 235 ~~L~~~~~~l~~l~~~l~~l~~~~ 258 (344)
T PF12777_consen 235 EQLAEKQAELAELEEKLAALQKEY 258 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555555454444
No 67
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=22.61 E-value=2.7e+02 Score=22.35 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 242 AISALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 242 LLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
....|++++++-+.+++.|+...+.|+..|
T Consensus 72 ~~~~l~~~~~~l~~~i~~l~~~~~~l~~~l 101 (102)
T cd04775 72 VQAILEERLQSLNREIQRLRQQQQVLAAIL 101 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356778888888888888888888887765
No 68
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=22.50 E-value=4e+02 Score=27.20 Aligned_cols=68 Identities=19% Similarity=0.274 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCccceeecchhhHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021219 193 VLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESEAF 272 (316)
Q Consensus 193 IL~qEE~eAY~kA~~qs~~~g~ldpLTkIHN~SVYT~SLC~LmE~~~~PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~ 272 (316)
-+||||..-..+.+.|- +-.+-+ .++.++.|=|+|+.-=..+ +-..--+.++++|.+|+.-|++||+
T Consensus 17 EIcqEENkiLdK~hRQK-----V~EVEK------LsqTi~ELEEaiLagGaaa--NavrdYqrq~~elneEkrtLeRELA 83 (351)
T PF07058_consen 17 EICQEENKILDKMHRQK-----VLEVEK------LSQTIRELEEAILAGGAAA--NAVRDYQRQVQELNEEKRTLERELA 83 (351)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHH------HHHHHHHHHHHHHhcchHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899988888777552 222222 3566777777776432222 2223345678899999999999997
Q ss_pred c
Q 021219 273 K 273 (316)
Q Consensus 273 ~ 273 (316)
.
T Consensus 84 R 84 (351)
T PF07058_consen 84 R 84 (351)
T ss_pred H
Confidence 4
No 69
>PRK02119 hypothetical protein; Provisional
Probab=22.48 E-value=3.9e+02 Score=21.00 Aligned_cols=31 Identities=10% Similarity=0.129 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 021219 245 ALQDRLKENEIRLAMLTDEAKSLESEAFKGS 275 (316)
Q Consensus 245 ~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~gs 275 (316)
.|=+-+...++.|..|+++.+.|..+++...
T Consensus 27 ~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 27 ELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444455566667777777777777775543
No 70
>PRK02793 phi X174 lysis protein; Provisional
Probab=22.32 E-value=3.8e+02 Score=20.91 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 021219 245 ALQDRLKENEIRLAMLTDEAKSLESEAFKGSDS 277 (316)
Q Consensus 245 ~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~gs~~ 277 (316)
.|=+=+-+.++.|..|+++.+.|..+++.....
T Consensus 26 ~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~ 58 (72)
T PRK02793 26 ELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPS 58 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 344445556667777777777777777654433
No 71
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=22.25 E-value=4.2e+02 Score=24.45 Aligned_cols=43 Identities=30% Similarity=0.444 Sum_probs=26.4
Q ss_pred hHHHHHHHHHhhHH---HHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 229 ASMCKLIEYCLSPA---ISALQ---DRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 229 ~SLC~LmE~~~~PL---Lq~LE---dRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
+-||+.++.+..=| +..|+ ++++..+.+++.|+.++..|+.||
T Consensus 112 ~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL 160 (171)
T PF04799_consen 112 ARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESEL 160 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777776666 23333 455556666666666666666665
No 72
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=22.21 E-value=1.7e+02 Score=28.91 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021219 242 AISALQDRLKENEIRLAMLTDEAKSLESEAFK 273 (316)
Q Consensus 242 LLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~ 273 (316)
.|.-||.|-+.-++.+++|++.++++++|+.+
T Consensus 5 ~L~eL~qrk~~Lq~eIe~LerR~~ri~~Emrt 36 (283)
T PF11285_consen 5 ALKELEQRKQALQIEIEQLERRRERIEKEMRT 36 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999999953
No 73
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=21.96 E-value=4.1e+02 Score=22.08 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 246 LQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 246 LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
|.+.++..+.+++.++.+.++|.+++
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~ 103 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKL 103 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555555555554444
No 74
>KOG1555 consensus 26S proteasome regulatory complex, subunit RPN11 [Posttranslational modification, protein turnover, chaperones]
Probab=21.77 E-value=1.2e+02 Score=30.33 Aligned_cols=47 Identities=19% Similarity=0.141 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 021219 229 ASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESEAFKGSDS 277 (316)
Q Consensus 229 ~SLC~LmE~~~~PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~gs~~ 277 (316)
.++|+..+ +.|+.+++.++.++++.++.+|+...++..++-.+.-..
T Consensus 251 ~~~~~~~s--L~~~~N~~~~~~k~~~~~~~~i~d~~~~~~kq~l~~~v~ 297 (316)
T KOG1555|consen 251 QSVPSMKS--LSKVYNKVCDVCKQMSDFLLMIEDVGEQNPKQHLKEAVT 297 (316)
T ss_pred hhhhHHHh--HHHHHHHHHHHHhhccHHHHHHHHhhhhhHHHHhHHHhh
Confidence 33445444 788999999999999999999999988885444343333
No 75
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=21.71 E-value=98 Score=32.69 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021219 248 DRLKENEIRLAMLTDEAKSLESEAFKG 274 (316)
Q Consensus 248 dRL~~Nk~Rl~~Lq~EkeqL~~el~~g 274 (316)
++++.-+.+++.||++..+|+++|++.
T Consensus 25 ~~i~~L~~ql~aLq~~v~eL~~~laa~ 51 (514)
T PF11336_consen 25 DQIKALQAQLQALQDQVNELRAKLAAK 51 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 677888889999999999999999543
No 76
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=21.63 E-value=2.9e+02 Score=22.35 Aligned_cols=49 Identities=18% Similarity=0.229 Sum_probs=29.6
Q ss_pred ccceeecchhhHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021219 217 PLTYIHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESEAFK 273 (316)
Q Consensus 217 pLTkIHN~SVYT~SLC~LmE~~~~PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~ 273 (316)
+-+.+|-...-+.--+||+.+. +.-.+.-+.+++.|+.+.++|.+++..
T Consensus 57 ~~~~~~~l~P~~~i~a~l~~~~--------~~~~~~L~~~l~~l~~eN~~L~~~i~~ 105 (109)
T PF03980_consen 57 KPVWRHSLTPEEDIRAHLAPYK--------KKEREQLNARLQELEEENEALAEEIQE 105 (109)
T ss_pred CCCCCCCCChHHHHHHHhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666655555555433 344444456677777777777777754
No 77
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=21.56 E-value=1.3e+02 Score=22.74 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 241 PAISALQDRLKENEIRLAMLTDEAKSLESE 270 (316)
Q Consensus 241 PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~e 270 (316)
+.+...+.+|.++..+|+.|+.+.+.+++.
T Consensus 42 ~~~~~~~~~l~es~~ki~~Lr~~L~k~~~~ 71 (72)
T cd00089 42 KLLAEAEQMLRESKQKLELLKMQLEKLKQE 71 (72)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 568889999999999999999999988754
No 78
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=21.37 E-value=1.8e+02 Score=24.26 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021219 246 LQDRLKENEIRLAMLTDEAKSLESEAF 272 (316)
Q Consensus 246 LEdRL~~Nk~Rl~~Lq~EkeqL~~el~ 272 (316)
.+.|+.+-+.++..|.+|.++|..++.
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~ 73 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLD 73 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888889999999999999988874
No 79
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=21.18 E-value=1.8e+02 Score=25.05 Aligned_cols=30 Identities=27% Similarity=0.237 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 021219 248 DRLKENEIRLAMLTDEAKSLESEAFKGSDS 277 (316)
Q Consensus 248 dRL~~Nk~Rl~~Lq~EkeqL~~el~~gs~~ 277 (316)
.-++.-...|++|+..++.+..+.....+.
T Consensus 55 ~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 55 AALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444555666666666666666555444
No 80
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=20.88 E-value=2e+02 Score=24.26 Aligned_cols=13 Identities=23% Similarity=0.110 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHh
Q 021219 260 LTDEAKSLESEAF 272 (316)
Q Consensus 260 Lq~EkeqL~~el~ 272 (316)
|+-|.+.|.+.+.
T Consensus 41 L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 41 LRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 81
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=20.84 E-value=2.3e+02 Score=21.78 Aligned_cols=29 Identities=10% Similarity=0.030 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021219 245 ALQDRLKENEIRLAMLTDEAKSLESEAFK 273 (316)
Q Consensus 245 ~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~ 273 (316)
.+|+.+++-+.-+...+++...|++++..
T Consensus 15 ~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~ 43 (69)
T PF04102_consen 15 FQEDTIEELNDVVTEQQRQIDRLQRQLRL 43 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455556666666643
No 82
>PRK04406 hypothetical protein; Provisional
Probab=20.28 E-value=4.4e+02 Score=20.86 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021219 246 LQDRLKENEIRLAMLTDEAKSLESEAFKG 274 (316)
Q Consensus 246 LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~g 274 (316)
|=+-+...++.|..|+++.+.|...+...
T Consensus 30 LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 30 LNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455566667777777776666443
No 83
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=20.28 E-value=2.7e+02 Score=24.33 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021219 239 LSPAISALQDRLKENEIRLAMLTDEAKSLESEAFKG 274 (316)
Q Consensus 239 ~~PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~g 274 (316)
=-=+++.|+.++.+-...+++|.-+.+.++++.++.
T Consensus 18 K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~ 53 (131)
T PF11068_consen 18 KEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQ 53 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334677888999999999999999999999888543
No 84
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.26 E-value=7.6e+02 Score=24.00 Aligned_cols=49 Identities=18% Similarity=0.080 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCc
Q 021219 246 LQDRLKENEIRLAMLTDEAKSLESEAFKGSDSSLSSPHHSPSHGLRGSA 294 (316)
Q Consensus 246 LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~gs~~~~~~p~~~~~~~~~gs~ 294 (316)
|-.|.-..++-|+.++.+.++|++.++.......+++.-|..-+..|+.
T Consensus 46 laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~~~~~sgsFLs~~f~~gt~ 94 (233)
T COG3416 46 LAQRVLIQEQALKKASTQIKELEKRIAILQAGEAGSGSFLSNAFKWGTP 94 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhhhcccCCC
Confidence 4566777777778888888888888775554334456555444434433
No 85
>KOG4634 consensus Mitochondrial F1F0-ATP synthase, subunit Cf6 (coupling factor 6) [Energy production and conversion]
Probab=20.18 E-value=3.8e+02 Score=23.17 Aligned_cols=47 Identities=21% Similarity=0.203 Sum_probs=36.6
Q ss_pred eeecchhhHhHHHHHHHHHhhHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHH
Q 021219 220 YIHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIR-------------LAMLTDEAKSLESEA 271 (316)
Q Consensus 220 kIHN~SVYT~SLC~LmE~~~~PLLq~LEdRL~~Nk~R-------------l~~Lq~EkeqL~~el 271 (316)
..|-+-|-|+..|. +-|.-|.++|++++-++. -++|++|...|-++.
T Consensus 17 s~~~gv~a~a~nk~-----~DpIqqlFldKvREy~~ks~~Gklvds~pe~e~eLk~el~rla~qf 76 (105)
T KOG4634|consen 17 SVHLGVTATAFNKE-----LDPIQQLFLDKVREYKKKSPAGKLVDSDPEYEQELKEELFRLAQQF 76 (105)
T ss_pred HHhhchhhhHHHhh-----hChHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 34555566666665 468899999999998887 578999999888876
No 86
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=20.14 E-value=2e+02 Score=24.97 Aligned_cols=34 Identities=38% Similarity=0.378 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 021219 242 AISALQDRLKENEIRLAMLTDEAKSLESEAFKGS 275 (316)
Q Consensus 242 LLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~gs 275 (316)
=+..|...+.+-+.+++.|+.+.+.|+.+++...
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLS 106 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3666666677777777777777777777765443
No 87
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=20.00 E-value=1.6e+02 Score=23.26 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=26.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 235 IEYCLSPAISALQDRLKENEIRLAMLTDEAKSLES 269 (316)
Q Consensus 235 mE~~~~PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~ 269 (316)
|+.|++==...+...|...+.+|+.|+...++|++
T Consensus 44 ldlVtREEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 44 LDLVTREEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555555777778888888888888888888875
Done!