Query 021219
Match_columns 316
No_of_seqs 57 out of 59
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 14:29:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021219.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021219hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_V 26S proteasome regulato 93.5 0.014 4.9E-07 54.3 0.3 33 1-36 128-160 (306)
2 3mq9_A Bone marrow stromal ant 80.6 4.1 0.00014 38.3 7.4 75 190-272 386-460 (471)
3 1nkp_B MAX protein, MYC proto- 72.5 7.4 0.00025 29.3 5.6 33 243-275 49-81 (83)
4 2lq4_p Lysophosphatidic acid r 70.5 0.24 8.3E-06 38.4 -3.1 30 244-273 2-31 (80)
5 2wq1_A General control protein 68.6 11 0.00037 25.5 5.0 29 243-271 2-30 (33)
6 2kcq_A MOV34/MPN/PAD-1 family; 68.0 7.8 0.00027 31.8 5.2 39 4-48 100-139 (153)
7 2yy0_A C-MYC-binding protein; 57.6 20 0.00068 25.8 5.1 31 243-273 21-51 (53)
8 3oja_B Anopheles plasmodium-re 56.7 14 0.00047 35.4 5.4 45 245-289 548-594 (597)
9 1gk7_A Vimentin; intermediate 55.4 24 0.00083 24.0 5.0 31 242-272 7-37 (39)
10 1nlw_A MAD protein, MAX dimeri 53.1 23 0.00079 27.0 5.1 31 243-273 49-79 (80)
11 1kd8_B GABH BLL, GCN4 acid bas 52.6 30 0.001 23.7 5.0 30 243-272 3-32 (36)
12 1yf2_A Type I restriction-modi 50.9 21 0.00072 31.5 5.3 32 244-275 389-420 (425)
13 2oxj_A Hybrid alpha/beta pepti 49.7 36 0.0012 23.1 5.0 28 244-271 4-31 (34)
14 1ydx_A Type I restriction enzy 48.7 30 0.001 31.1 6.0 32 245-276 366-397 (406)
15 3c3f_A Alpha/beta peptide with 48.7 38 0.0013 22.9 5.0 29 243-271 3-31 (34)
16 1nkp_A C-MYC, MYC proto-oncoge 45.7 33 0.0011 26.5 5.0 32 243-274 54-85 (88)
17 1a93_B MAX protein, coiled coi 43.9 18 0.0006 24.5 2.8 29 245-273 4-32 (34)
18 2oqq_A Transcription factor HY 43.6 39 0.0013 23.8 4.6 28 245-272 14-41 (42)
19 1kd8_A GABH AIV, GCN4 acid bas 43.1 36 0.0012 23.3 4.2 29 244-272 4-32 (36)
20 2jee_A YIIU; FTSZ, septum, coi 43.0 38 0.0013 26.6 5.0 31 241-271 6-36 (81)
21 3c3g_A Alpha/beta peptide with 42.7 55 0.0019 22.1 5.0 28 244-271 3-30 (33)
22 1yf2_A Type I restriction-modi 41.5 41 0.0014 29.7 5.6 32 244-275 179-210 (425)
23 1lwu_C Fibrinogen gamma chain; 41.2 49 0.0017 31.4 6.4 30 243-272 28-57 (323)
24 1jnm_A Proto-oncogene C-JUN; B 41.0 53 0.0018 23.6 5.2 32 242-273 23-54 (62)
25 3he4_B Synzip5; heterodimeric 40.9 69 0.0024 22.5 5.5 35 239-273 8-42 (46)
26 2zqm_A Prefoldin beta subunit 37.7 53 0.0018 25.2 5.1 29 243-271 72-100 (117)
27 1wt6_A Myotonin-protein kinase 37.6 65 0.0022 25.4 5.5 33 241-273 38-70 (81)
28 1fxk_A Prefoldin; archaeal pro 36.8 58 0.002 24.6 5.1 31 242-272 66-96 (107)
29 3m48_A General control protein 36.7 53 0.0018 22.1 4.2 27 245-271 4-30 (33)
30 1uo4_A General control protein 34.8 51 0.0017 22.3 3.9 28 244-271 4-31 (34)
31 1ci6_A Transcription factor AT 34.7 71 0.0024 23.2 5.1 27 244-270 33-59 (63)
32 1ci6_A Transcription factor AT 34.5 69 0.0023 23.3 5.0 30 243-272 25-54 (63)
33 1t2k_D Cyclic-AMP-dependent tr 33.8 75 0.0026 22.6 5.0 26 246-271 34-59 (61)
34 1t2k_D Cyclic-AMP-dependent tr 33.7 63 0.0022 23.0 4.6 32 242-273 23-54 (61)
35 2gkw_A TNF receptor-associated 33.0 57 0.002 27.5 5.0 29 243-271 2-30 (192)
36 1dh3_A Transcription factor CR 32.6 42 0.0014 24.0 3.5 28 243-270 24-51 (55)
37 1t3j_A Mitofusin 1; coiled coi 32.1 1.4E+02 0.0048 24.0 6.8 43 229-271 39-87 (96)
38 3nmd_A CGMP dependent protein 31.1 79 0.0027 24.4 5.0 29 243-271 35-63 (72)
39 2r2v_A GCN4 leucine zipper; co 30.9 1.1E+02 0.0037 20.7 5.0 28 244-271 4-31 (34)
40 1deq_A Fibrinogen (alpha chain 30.7 1E+02 0.0034 30.4 6.8 48 186-236 50-98 (390)
41 2zvf_A Alanyl-tRNA synthetase; 30.4 57 0.002 26.6 4.4 28 245-272 29-56 (171)
42 1dip_A Delta-sleep-inducing pe 30.0 2E+02 0.0068 22.5 8.1 29 243-271 17-45 (78)
43 3ljm_A Coil Ser L9C; de novo d 29.9 89 0.0031 20.4 4.3 25 244-268 4-28 (31)
44 2dgc_A Protein (GCN4); basic d 29.4 63 0.0022 23.6 4.0 27 245-271 34-60 (63)
45 3ni0_A Bone marrow stromal ant 29.4 2E+02 0.0067 23.5 7.2 21 252-272 64-84 (99)
46 2q12_A DIP13 alpha, DCC-intera 29.3 66 0.0023 28.0 4.9 57 222-278 205-261 (265)
47 4h8s_A DCC-interacting protein 29.1 1.6E+02 0.0056 27.1 7.8 53 226-278 232-284 (407)
48 1ca9_A TRAF2, protein (TNF rec 27.9 75 0.0026 26.4 4.8 26 244-269 13-38 (192)
49 3viq_B Mating-type switching p 27.4 59 0.002 25.7 3.8 29 244-272 4-32 (85)
50 2pnv_A Small conductance calci 27.4 1.5E+02 0.005 20.7 5.4 33 241-273 9-41 (43)
51 2eqb_B RAB guanine nucleotide 27.3 92 0.0031 25.2 5.0 22 247-268 11-32 (97)
52 2o95_A 26S proteasome non-ATPa 27.3 25 0.00085 29.5 1.7 30 2-35 113-142 (187)
53 2bni_A General control protein 27.2 75 0.0025 21.5 3.7 28 244-271 4-31 (34)
54 1ezj_A Nucleocapsid phosphopro 27.1 1E+02 0.0035 25.5 5.3 49 223-275 45-93 (115)
55 1q08_A Zn(II)-responsive regul 26.8 1.2E+02 0.004 22.4 5.2 32 242-273 40-71 (99)
56 1lwu_B Fibrinogen beta chain; 26.8 67 0.0023 30.3 4.7 33 241-273 28-60 (323)
57 2wt7_A Proto-oncogene protein 26.8 1.1E+02 0.0038 22.0 5.0 27 244-270 26-52 (63)
58 1ydx_A Type I restriction enzy 26.3 1.2E+02 0.0041 27.2 6.1 31 243-273 176-206 (406)
59 2dgc_A Protein (GCN4); basic d 26.2 74 0.0025 23.3 3.9 27 248-274 30-56 (63)
60 2oqq_A Transcription factor HY 26.2 1.4E+02 0.0048 21.0 5.1 30 243-272 5-34 (42)
61 2oxj_A Hybrid alpha/beta pepti 26.1 53 0.0018 22.2 2.8 25 249-273 2-26 (34)
62 1fmh_A General control protein 25.5 1.4E+02 0.0047 19.8 4.6 28 244-271 4-31 (33)
63 1zme_C Proline utilization tra 25.1 86 0.0029 21.8 4.0 20 243-262 46-65 (70)
64 1zme_C Proline utilization tra 25.0 41 0.0014 23.4 2.3 25 248-272 44-68 (70)
65 3m48_A General control protein 24.9 49 0.0017 22.3 2.5 25 249-273 1-25 (33)
66 3c3g_A Alpha/beta peptide with 24.7 70 0.0024 21.5 3.2 25 249-273 1-25 (33)
67 3cve_A Homer protein homolog 1 24.3 1.2E+02 0.0042 23.1 5.0 28 243-270 23-50 (72)
68 4e61_A Protein BIM1; EB1-like 24.2 1.2E+02 0.0039 25.0 5.1 25 243-267 6-30 (106)
69 1r8d_A Transcription activator 24.1 1.8E+02 0.0061 22.2 6.0 31 242-272 76-106 (109)
70 3cvf_A Homer-3, homer protein 24.0 1.2E+02 0.0042 23.5 5.0 29 243-271 29-57 (79)
71 1m1j_C Fibrinogen gamma chain; 24.0 2.3E+02 0.008 27.6 8.1 29 243-271 107-135 (409)
72 2wg5_A General control protein 23.7 53 0.0018 26.1 3.0 26 249-274 8-33 (109)
73 1fzc_C Fibrin; blood coagulati 23.6 77 0.0026 30.0 4.5 31 243-273 20-50 (319)
74 2kks_A Uncharacterized protein 23.5 61 0.0021 26.1 3.3 33 4-41 98-130 (146)
75 2fxo_A Myosin heavy chain, car 23.5 1.1E+02 0.0039 24.7 5.0 29 243-271 85-113 (129)
76 3kin_B Kinesin heavy chain; mo 23.4 1.1E+02 0.0037 24.7 4.8 29 244-272 85-113 (117)
77 2hy6_A General control protein 22.9 1.3E+02 0.0044 20.4 4.2 28 244-271 4-31 (34)
78 2l5g_A GPS2 protein, G protein 22.8 95 0.0032 21.5 3.6 18 250-267 17-34 (38)
79 2wt7_A Proto-oncogene protein 22.6 1.5E+02 0.0051 21.3 5.0 28 244-271 33-60 (63)
80 1hjb_A Ccaat/enhancer binding 22.5 1.4E+02 0.0048 23.4 5.1 35 239-273 41-75 (87)
81 3err_A Fusion protein of micro 22.4 95 0.0033 31.0 5.1 43 231-273 154-205 (536)
82 3iyn_Q Protein IX, PIX, hexon- 22.3 1.1E+02 0.0037 26.2 4.7 34 240-273 97-130 (140)
83 3efg_A Protein SLYX homolog; x 22.0 1E+02 0.0034 23.5 4.1 33 243-275 30-62 (78)
84 1hjb_A Ccaat/enhancer binding 21.6 87 0.003 24.6 3.7 23 250-272 38-60 (87)
85 1kd8_B GABH BLL, GCN4 acid bas 21.6 72 0.0025 21.8 2.8 25 249-273 2-26 (36)
86 3gp4_A Transcriptional regulat 21.6 2.9E+02 0.01 22.3 7.1 31 242-272 82-112 (142)
87 3s4r_A Vimentin; alpha-helix, 21.5 1.4E+02 0.0049 23.2 5.0 30 243-272 11-40 (93)
88 1gd2_E Transcription factor PA 21.5 1E+02 0.0034 23.3 3.9 14 258-271 53-66 (70)
89 2jee_A YIIU; FTSZ, septum, coi 21.4 1.5E+02 0.005 23.3 5.0 22 246-267 18-39 (81)
90 1m1j_B Fibrinogen beta chain; 21.4 2.4E+02 0.0083 28.0 7.7 29 243-271 170-198 (464)
91 3mq9_A Bone marrow stromal ant 21.4 2.3E+02 0.0079 26.3 7.3 42 230-272 426-467 (471)
92 1fxk_A Prefoldin; archaeal pro 20.9 1.1E+02 0.0037 23.1 4.1 23 245-267 12-34 (107)
93 3c3f_A Alpha/beta peptide with 20.7 93 0.0032 21.1 3.2 25 249-273 2-26 (34)
94 1fzc_B Fibrin; blood coagulati 20.4 1E+02 0.0036 29.0 4.7 31 243-273 32-62 (328)
No 1
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.53 E-value=0.014 Score=54.28 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=29.4
Q ss_pred CcccccccceeEEEEeeecCccccccEEEEEEecCC
Q 021219 1 MYQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSD 36 (316)
Q Consensus 1 myQ~ld~gfvGlIFScf~~d~~k~griqviaFQs~~ 36 (316)
+||.+++.||+|||.+|.++ .|++.+.|||+.+
T Consensus 128 ~yQ~~~~~~V~lV~Dp~~t~---~G~~~i~Afr~~~ 160 (306)
T 4b4t_V 128 SFEQLNSRAVAVVVDPIQSV---KGKVVIDAFRLID 160 (306)
T ss_dssp HHHHHCSSCEEEEECSSSSS---SCSSCEEEEECCH
T ss_pred HHHhcCCCcEEEEECCCcCC---CCceeeeEEEecC
Confidence 48999999999999999865 3999999999876
No 2
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=80.60 E-value=4.1 Score=38.30 Aligned_cols=75 Identities=11% Similarity=0.070 Sum_probs=47.5
Q ss_pred HhHHHHHHHHHHHHHHHHhhccCCCCCccceeecchhhHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 190 LQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLES 269 (316)
Q Consensus 190 Lp~IL~qEE~eAY~kA~~qs~~~g~ldpLTkIHN~SVYT~SLC~LmE~~~~PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~ 269 (316)
|.+...+.|...+.+.++| +++.+-+=.-..--|++-|++. +.-|...||....|.+.|+++|+.|...|.+
T Consensus 386 l~~~~~~~e~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (471)
T 3mq9_A 386 RDGLRAVMEARNVTHLLQQ-----ELTEAQKGFQDVEAQAATANHT---VMALMASLDAEKAQGQKKVEELEGEITTLNH 457 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhhhHHHHHHH-----HHHHHhhhHHHHHHHhhhcchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666643 2344443333444455666553 3456777888888888888888888888887
Q ss_pred HHh
Q 021219 270 EAF 272 (316)
Q Consensus 270 el~ 272 (316)
+|.
T Consensus 458 ~~~ 460 (471)
T 3mq9_A 458 KLQ 460 (471)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=72.54 E-value=7.4 Score=29.30 Aligned_cols=33 Identities=12% Similarity=0.114 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEAFKGS 275 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~gs 275 (316)
|.+|+.+.+.-+..+..|+++.++|++++.+..
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 678899999999999999999999999996543
No 4
>2lq4_p Lysophosphatidic acid receptor 1; GPCR, G protein-coupled receptor, de novo protein; NMR {Artificial gene}
Probab=70.49 E-value=0.24 Score=38.36 Aligned_cols=30 Identities=37% Similarity=0.416 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021219 244 SALQDRLKENEIRLAMLTDEAKSLESEAFK 273 (316)
Q Consensus 244 q~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~ 273 (316)
|+||.-+.+|+-.++.|++|..+|++|+..
T Consensus 2 qalekelaqnewelqalekelaqlekelqa 31 (80)
T 2lq4_p 2 QALEKELAQNEWELQALEKELAQLEKELQA 31 (80)
T ss_dssp CSSHHHHSSSSTTTHHHHTTHHHHHHHHTT
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999953
No 5
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=68.58 E-value=11 Score=25.45 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
+.-|||+++++-.+...|+.|.+.|...+
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 35689999999999999999999998776
No 6
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=67.97 E-value=7.8 Score=31.77 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=27.8
Q ss_pred cccccceeEEEEeeecCcccccc-EEEEEEecCCCCcccccccccc
Q 021219 4 LLDTGFIGLIFSCFSEDANKVGR-IQVIAFQSSDGKQNHISKPIAL 48 (316)
Q Consensus 4 ~ld~gfvGlIFScf~~d~~k~gr-iqviaFQs~~g~~~~~~~pi~~ 48 (316)
..++|++.+|+|+++ |+ ..+.||+..++.......||.+
T Consensus 100 ~~~~~~~~lIvs~~~------~~~~~~~af~~~~~~g~~~e~~i~v 139 (153)
T 2kcq_A 100 ATFPGFTYVIVSVRD------GAPEALTAWALAPDRSEFHREDIVR 139 (153)
T ss_dssp CCCTTSEEEEEEEET------TEEEEEEEEEECTTCSCEEEECCBC
T ss_pred hhcCCCeEEEEECCC------CCccEEEEEEEeCCCCcEEEEEEEE
Confidence 357999999999986 33 4689999966555554455543
No 7
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=57.55 E-value=20 Score=25.76 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEAFK 273 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~ 273 (316)
+.+|..-+++-+.+++.|+++.++|.+++.+
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6778888889999999999999999999854
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=56.65 E-value=14 Score=35.43 Aligned_cols=45 Identities=16% Similarity=0.153 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC--CCCCCCCCC
Q 021219 245 ALQDRLKENEIRLAMLTDEAKSLESEAFKGSDSSLS--SPHHSPSHG 289 (316)
Q Consensus 245 ~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~gs~~~~~--~p~~~~~~~ 289 (316)
.||.++++.+.++++|++|.+.+.+++++.-+.--+ +-|||.-|-
T Consensus 548 ~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 594 (597)
T 3oja_B 548 ALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRRVSHHH 594 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------------
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccc
Confidence 466777777888888888877776666643332222 446665443
No 9
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=55.42 E-value=24 Score=24.02 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021219 242 AISALQDRLKENEIRLAMLTDEAKSLESEAF 272 (316)
Q Consensus 242 LLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~ 272 (316)
-|+.|=||++.--.++..|+.+.+.|+.++.
T Consensus 7 ~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 7 ELQELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999984
No 10
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=53.05 E-value=23 Score=27.02 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEAFK 273 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~ 273 (316)
|..|+.+.+........|+.|.++|.+++.+
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5678888888888999999999999999853
No 11
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=52.57 E-value=30 Score=23.73 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEAF 272 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~ 272 (316)
+.-||++.++-..+...|+.|.+.|...+.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 356888888888888888888888877763
No 12
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=50.91 E-value=21 Score=31.54 Aligned_cols=32 Identities=13% Similarity=0.181 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 021219 244 SALQDRLKENEIRLAMLTDEAKSLESEAFKGS 275 (316)
Q Consensus 244 q~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~gs 275 (316)
..|.+..+.++.+++.|++.++.|+++++.|-
T Consensus 389 ~~ld~~i~~~~~~~~~l~~~k~~Ll~~l~~G~ 420 (425)
T 1yf2_A 389 SSVDKSIELKKQKKEKLQRMKKKIMELLLTGK 420 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 35677888889999999999999999998863
No 13
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=49.75 E-value=36 Score=23.06 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 244 SALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 244 q~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
.-||+|.++--.+-..|+.|.+.|...+
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4578888777777777777777777665
No 14
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=48.72 E-value=30 Score=31.13 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 021219 245 ALQDRLKENEIRLAMLTDEAKSLESEAFKGSD 276 (316)
Q Consensus 245 ~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~gs~ 276 (316)
.|.+.++.++.+++.|++.++.|+++++.|--
T Consensus 366 ~id~~i~~~~~~i~~L~~lk~~LL~~lf~G~l 397 (406)
T 1ydx_A 366 LLDQKLDQYKKELSSLTVIRDTLLKKLFPDMT 397 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 56788888999999999999999999998753
No 15
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=48.69 E-value=38 Score=22.92 Aligned_cols=29 Identities=10% Similarity=0.147 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
+.-|||++++--.+-..|+.|.+.|...+
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34578888887777788888887777665
No 16
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=45.67 E-value=33 Score=26.46 Aligned_cols=32 Identities=13% Similarity=0.042 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEAFKG 274 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~g 274 (316)
|+.|+.+.+.....+..|+.+.++|.+++.+.
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67788888888888899999999999998654
No 17
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=43.87 E-value=18 Score=24.53 Aligned_cols=29 Identities=10% Similarity=0.157 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021219 245 ALQDRLKENEIRLAMLTDEAKSLESEAFK 273 (316)
Q Consensus 245 ~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~ 273 (316)
....+...+++-|.+|+++...|+++++.
T Consensus 4 ~mRrKn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 4 GMRRKNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 34567889999999999999999999864
No 18
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=43.62 E-value=39 Score=23.81 Aligned_cols=28 Identities=29% Similarity=0.296 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021219 245 ALQDRLKENEIRLAMLTDEAKSLESEAF 272 (316)
Q Consensus 245 ~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~ 272 (316)
.||.|..+-+.|+.-|+.|..-|.+-++
T Consensus 14 ~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 14 DLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 4666777777777777777777777664
No 19
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=43.10 E-value=36 Score=23.34 Aligned_cols=29 Identities=28% Similarity=0.306 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021219 244 SALQDRLKENEIRLAMLTDEAKSLESEAF 272 (316)
Q Consensus 244 q~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~ 272 (316)
.-||++.++--.+-..|+.|.+.|...+.
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 45888888888888888888888888774
No 20
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=42.96 E-value=38 Score=26.61 Aligned_cols=31 Identities=13% Similarity=0.262 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 241 PAISALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 241 PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
-++.-||.|+++.-..|+-|+-|.++|..+.
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN 36 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKN 36 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777766665555555555555443
No 21
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=42.73 E-value=55 Score=22.05 Aligned_cols=28 Identities=7% Similarity=0.119 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 244 SALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 244 q~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
.-|||++++--.+-..|+.|.+.|...+
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4577777777777777777777776655
No 22
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=41.52 E-value=41 Score=29.66 Aligned_cols=32 Identities=13% Similarity=0.155 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 021219 244 SALQDRLKENEIRLAMLTDEAKSLESEAFKGS 275 (316)
Q Consensus 244 q~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~gs 275 (316)
..|.+.++.++.+++.|++.++.|.++++.+.
T Consensus 179 ~~ld~~i~~~~~~i~~l~~~k~~l~~~~~~~~ 210 (425)
T 1yf2_A 179 TKIDEGIEIIEKSINKLERIKKGLMHKLLTKG 210 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 36788899999999999999999999999854
No 23
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=41.23 E-value=49 Score=31.35 Aligned_cols=30 Identities=13% Similarity=0.178 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEAF 272 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~ 272 (316)
++.|+..++.++.+|++|+.+..+|+..+.
T Consensus 28 i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 28 IQELSEMWRVNQQFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677899999999999999999999998774
No 24
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=40.97 E-value=53 Score=23.55 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021219 242 AISALQDRLKENEIRLAMLTDEAKSLESEAFK 273 (316)
Q Consensus 242 LLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~ 273 (316)
-+..||++++.-+..-..|+.+...|..|+..
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777777777744
No 25
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=40.92 E-value=69 Score=22.53 Aligned_cols=35 Identities=26% Similarity=0.114 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021219 239 LSPAISALQDRLKENEIRLAMLTDEAKSLESEAFK 273 (316)
Q Consensus 239 ~~PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~ 273 (316)
++--+|-||.|.++-+.--+.|+=.+.+|+=|++.
T Consensus 8 lknyiqeleernaelknlkehlkfakaelefelaa 42 (46)
T 3he4_B 8 LKNYIQELEERNAELKNLKEHLKFAKAELEFELAA 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHh
Confidence 34568899999999888888899899999988854
No 26
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=37.71 E-value=53 Score=25.16 Aligned_cols=29 Identities=24% Similarity=0.508 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
+..|++|.+.-+.+++.|+.+.+.+++++
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l 100 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKL 100 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554444444444443
No 27
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=37.59 E-value=65 Score=25.44 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021219 241 PAISALQDRLKENEIRLAMLTDEAKSLESEAFK 273 (316)
Q Consensus 241 PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~ 273 (316)
-....++.+|+..+.|-+.|..|.+.|++++..
T Consensus 38 ~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 38 TDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888888888888888888887754
No 28
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=36.77 E-value=58 Score=24.64 Aligned_cols=31 Identities=13% Similarity=0.221 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021219 242 AISALQDRLKENEIRLAMLTDEAKSLESEAF 272 (316)
Q Consensus 242 LLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~ 272 (316)
+...|+.|.+.-+.+++.|+.+.+.+++++.
T Consensus 66 ~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~ 96 (107)
T 1fxk_A 66 LTEELQEKLETLQLREKTIERQEERVMKKLQ 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667766666666666666666666553
No 29
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=36.69 E-value=53 Score=22.12 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 245 ALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 245 ~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
-||+|.++--.+-..|+.|.+.|...+
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 467777777777777777777766554
No 30
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=34.81 E-value=51 Score=22.33 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 244 SALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 244 q~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
.-|||+.++--.+-..|+.|...|.+.+
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4578888887777778888877776655
No 31
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=34.73 E-value=71 Score=23.22 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 244 SALQDRLKENEIRLAMLTDEAKSLESE 270 (316)
Q Consensus 244 q~LEdRL~~Nk~Rl~~Lq~EkeqL~~e 270 (316)
+.|+.+..+-+.+++.|+.|.+.|...
T Consensus 33 ~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 33 KELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555443
No 32
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=34.51 E-value=69 Score=23.29 Aligned_cols=30 Identities=33% Similarity=0.275 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEAF 272 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~ 272 (316)
++.|+.+++.-+.+-..|+.+.+.|+.|+.
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777777764
No 33
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=33.80 E-value=75 Score=22.63 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 246 LQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 246 LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
|+.....-+.+++.|+.|..+|...+
T Consensus 34 L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 34 LSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444443
No 34
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=33.74 E-value=63 Score=23.02 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021219 242 AISALQDRLKENEIRLAMLTDEAKSLESEAFK 273 (316)
Q Consensus 242 LLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~ 273 (316)
-++.||++.+.-+..-..|+.+.+.|..|+..
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~ 54 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQ 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888888888888888888888887753
No 35
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=32.98 E-value=57 Score=27.46 Aligned_cols=29 Identities=10% Similarity=0.150 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
++.||.|+++...++..++.+..+|+.++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (192)
T 2gkw_A 2 TGLLESQLSRHDQMLSVHDIRLADMDLRF 30 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777776666666666554
No 36
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=32.64 E-value=42 Score=23.99 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESE 270 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~e 270 (316)
+..||.++.+-+..-..|..+.+.|.++
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455655554444444444444444443
No 37
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=32.05 E-value=1.4e+02 Score=24.01 Aligned_cols=43 Identities=28% Similarity=0.440 Sum_probs=28.7
Q ss_pred hHHHHHHHHHhhHH---HHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 229 ASMCKLIEYCLSPA---ISALQ---DRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 229 ~SLC~LmE~~~~PL---Lq~LE---dRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
+-||++++.+..=| +..|+ ++++..+.+++.|+-++--|+.||
T Consensus 39 arLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eL 87 (96)
T 1t3j_A 39 ARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESEL 87 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 46899998887766 34444 455566666666666666666665
No 38
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=31.09 E-value=79 Score=24.36 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
|+..+.|+++-+.+|++...+.++|+.+|
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777777777777777777777777
No 39
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=30.87 E-value=1.1e+02 Score=20.74 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 244 SALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 244 q~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
.-|||++++--.+...|+.|...|.+.+
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4577888777777777777777777655
No 40
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=30.71 E-value=1e+02 Score=30.40 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=28.0
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHhhccCCCCCccceeecch-hhHhHHHHHHH
Q 021219 186 SFTDLQRVLYEEERAAYNQAIMQNMSDGKVHPLTYIHHTS-TYQASMCKLIE 236 (316)
Q Consensus 186 Slv~Lp~IL~qEE~eAY~kA~~qs~~~g~ldpLTkIHN~S-VYT~SLC~LmE 236 (316)
+=++|+.+|-.-|++.- ..+..- ...++.+.+-|..+ .|+..|-.++-
T Consensus 50 sGCrLqg~Ldk~er~~~-~rIe~L--~~~L~~~s~s~~~~~~y~~~~~~~lk 98 (390)
T 1deq_A 50 SGCRMKGLIDEVDQDFT-SRINKL--RDSLFNYQKNSKDSNTLTKNIVELMR 98 (390)
T ss_pred ccchHHHHHHHhhhhHH-HHHHHH--HHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44678888887776532 233111 13456677777666 77776665543
No 41
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=30.40 E-value=57 Score=26.59 Aligned_cols=28 Identities=14% Similarity=-0.014 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021219 245 ALQDRLKENEIRLAMLTDEAKSLESEAF 272 (316)
Q Consensus 245 ~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~ 272 (316)
-|.+|++.-..+++.|++|.++|.++++
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a 56 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIA 56 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555443
No 42
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=29.99 E-value=2e+02 Score=22.53 Aligned_cols=29 Identities=21% Similarity=0.285 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
+..|.+|+++-.-|..+|+.|..-|..-.
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45677888888888888888887666554
No 43
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=29.89 E-value=89 Score=20.45 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 244 SALQDRLKENEIRLAMLTDEAKSLE 268 (316)
Q Consensus 244 q~LEdRL~~Nk~Rl~~Lq~EkeqL~ 268 (316)
.+||.+-+.-+.+++.|++..+.|+
T Consensus 4 ealekkcaalesklqalekkleale 28 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555556666666666654
No 44
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=29.41 E-value=63 Score=23.64 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 245 ALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 245 ~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
.||+++++-+..-..|..|.++|..++
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 45
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=29.39 E-value=2e+02 Score=23.49 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 021219 252 ENEIRLAMLTDEAKSLESEAF 272 (316)
Q Consensus 252 ~Nk~Rl~~Lq~EkeqL~~el~ 272 (316)
+.+.|+++|+.|.+.|.++|.
T Consensus 64 ~qq~~v~elqgEI~~Lnq~Lq 84 (99)
T 3ni0_A 64 EQQARIKELENEVTKLNQELE 84 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888775
No 46
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=29.26 E-value=66 Score=28.04 Aligned_cols=57 Identities=5% Similarity=-0.003 Sum_probs=43.1
Q ss_pred ecchhhHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 021219 222 HHTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESEAFKGSDSS 278 (316)
Q Consensus 222 HN~SVYT~SLC~LmE~~~~PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~gs~~~ 278 (316)
|.-.+|-.....++..=..|-+..|...++..+...+..+++.+++.+++...+++.
T Consensus 205 ~a~~~ff~~g~e~~~~~~~p~~~~l~~~l~~~r~~~~~~~~~~~~~~~~l~~~~~~~ 261 (265)
T 2q12_A 205 QAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREMDSDIETMQQTIEDLEVASDPL 261 (265)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccC
Confidence 333445555555554446899999999999999999999999999999998776643
No 47
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=29.09 E-value=1.6e+02 Score=27.11 Aligned_cols=53 Identities=9% Similarity=0.191 Sum_probs=37.6
Q ss_pred hhHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 021219 226 TYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESEAFKGSDSS 278 (316)
Q Consensus 226 VYT~SLC~LmE~~~~PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~gs~~~ 278 (316)
.|-.....++..-+.|.+.+|...++..+.+++..+++.+.+.+++.......
T Consensus 232 ~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (407)
T 4h8s_A 232 NFFKKGAEMFSKRMDSFLSSVADMVQSIQVELEAEAEKMRVSQQELLSVDESV 284 (407)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 33333333333346788889999999999998988888888998886554443
No 48
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=27.93 E-value=75 Score=26.45 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 244 SALQDRLKENEIRLAMLTDEAKSLES 269 (316)
Q Consensus 244 q~LEdRL~~Nk~Rl~~Lq~EkeqL~~ 269 (316)
+.||.++...+++|++|+.+.++|+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (192)
T 1ca9_A 13 QQLERSIGLKDLAMADLEQKVLEMEA 38 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56889999999999999998888875
No 49
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=27.45 E-value=59 Score=25.73 Aligned_cols=29 Identities=17% Similarity=0.103 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021219 244 SALQDRLKENEIRLAMLTDEAKSLESEAF 272 (316)
Q Consensus 244 q~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~ 272 (316)
..|+.|++.-+.++++|+.+.+++.++++
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~ 32 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLK 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35777777777777777777777777663
No 50
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=27.41 E-value=1.5e+02 Score=20.71 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021219 241 PAISALQDRLKENEIRLAMLTDEAKSLESEAFK 273 (316)
Q Consensus 241 PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~ 273 (316)
=++.-|.+|-+.-+.|+..|+...+.|.+.+-+
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345667888888888889999888888887743
No 51
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.34 E-value=92 Score=25.18 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021219 247 QDRLKENEIRLAMLTDEAKSLE 268 (316)
Q Consensus 247 EdRL~~Nk~Rl~~Lq~EkeqL~ 268 (316)
.+++.+.+.+++....|++.|.
T Consensus 11 re~l~~le~~~~~~~~e~~~L~ 32 (97)
T 2eqb_B 11 KEDYNTLKRELSDRDDEVKRLR 32 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHH
Confidence 3334444333333333333333
No 52
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=27.34 E-value=25 Score=29.52 Aligned_cols=30 Identities=10% Similarity=-0.039 Sum_probs=23.5
Q ss_pred cccccccceeEEEEeeecCccccccEEEEEEecC
Q 021219 2 YQLLDTGFIGLIFSCFSEDANKVGRIQVIAFQSS 35 (316)
Q Consensus 2 yQ~ld~gfvGlIFScf~~d~~k~griqviaFQs~ 35 (316)
||...+++|.|||.+... .+++.+.||++.
T Consensus 113 ~~~~~~~~v~Livd~~~~----~~~l~i~ay~~~ 142 (187)
T 2o95_A 113 MKRYCPNSVLVIIDVKPK----DLGLPTEAYISV 142 (187)
T ss_dssp HTTTCTTCEEEEECCCTT----C-CCSEEEEEEE
T ss_pred HHhcCCCCEEEEECCCCC----CCCcCeEEEEEe
Confidence 777889999999987532 345999999985
No 53
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=27.19 E-value=75 Score=21.53 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 244 SALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 244 q~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
.-|||++++--.+-..|+.|.+.|...+
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 3467777666666666666666665544
No 54
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=27.14 E-value=1e+02 Score=25.48 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=34.7
Q ss_pred cchhhHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 021219 223 HTSTYQASMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESEAFKGS 275 (316)
Q Consensus 223 N~SVYT~SLC~LmE~~~~PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~gs 275 (316)
|.+--+-.||-||=.+. ..++.+.++|+..|++.|+|...+..-.++.+
T Consensus 45 n~a~~~~~l~Gl~i~v~----~~~~~kv~en~~~L~QIQ~ei~s~rd~hkR~~ 93 (115)
T 1ezj_A 45 NYAEMTFNVCGLILSAE----KSSARKVDENKQLLKQIQESVESFRDIYKRFS 93 (115)
T ss_dssp SHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhh----hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556776665444 35789999999999999999988876554433
No 55
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=26.82 E-value=1.2e+02 Score=22.45 Aligned_cols=32 Identities=31% Similarity=0.343 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021219 242 AISALQDRLKENEIRLAMLTDEAKSLESEAFK 273 (316)
Q Consensus 242 LLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~ 273 (316)
+.+.|+.++++-+.++++|+...+.|...+..
T Consensus 40 ~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~ 71 (99)
T 1q08_A 40 SKGIVQERLQEVEARIAELQSMQRSLQRLNDA 71 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999999999999887753
No 56
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=26.79 E-value=67 Score=30.32 Aligned_cols=33 Identities=6% Similarity=0.158 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021219 241 PAISALQDRLKENEIRLAMLTDEAKSLESEAFK 273 (316)
Q Consensus 241 PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~ 273 (316)
--|+.|+.++++.+.+|+.|+.+..++...+.+
T Consensus 28 ~~I~~Lq~~le~L~~KI~~LE~~v~~q~~~~~~ 60 (323)
T 1lwu_B 28 GSLRSMKSVLEHLRAKMQRMEEAIKTQKELCSA 60 (323)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356778889999999999999988888776643
No 57
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=26.77 E-value=1.1e+02 Score=21.99 Aligned_cols=27 Identities=26% Similarity=0.206 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 244 SALQDRLKENEIRLAMLTDEAKSLESE 270 (316)
Q Consensus 244 q~LEdRL~~Nk~Rl~~Lq~EkeqL~~e 270 (316)
..|+++.+.-+..-..|+.+.+.|..|
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e 52 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444434444444444433
No 58
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=26.31 E-value=1.2e+02 Score=27.20 Aligned_cols=31 Identities=13% Similarity=0.231 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEAFK 273 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~ 273 (316)
|..+.+.++.++..++.|++.++.|.++++.
T Consensus 176 l~~~d~~i~~~~~~~~~l~~~k~~l~~~~f~ 206 (406)
T 1ydx_A 176 LSVFDERLENLASLIEINRKLRDEYAHKLFS 206 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3467888889999999999999999999886
No 59
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=26.19 E-value=74 Score=23.27 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021219 248 DRLKENEIRLAMLTDEAKSLESEAFKG 274 (316)
Q Consensus 248 dRL~~Nk~Rl~~Lq~EkeqL~~el~~g 274 (316)
+++.+-+.+++.|+.|...|.+++..+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777888888888888887543
No 60
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=26.18 E-value=1.4e+02 Score=21.01 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEAF 272 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~ 272 (316)
+..||.|.+.-+.+.++|++..--|+.|.+
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~ 34 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 567999999999999999999998888864
No 61
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=26.11 E-value=53 Score=22.25 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 021219 249 RLKENEIRLAMLTDEAKSLESEAFK 273 (316)
Q Consensus 249 RL~~Nk~Rl~~Lq~EkeqL~~el~~ 273 (316)
|..|-+-++..|-.+++.|++|+..
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~r 26 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXR 26 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 5667788999999999999999854
No 62
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=25.52 E-value=1.4e+02 Score=19.79 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 244 SALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 244 q~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
.-||.-.++.+..--+|++|..+|+-|+
T Consensus 4 aqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 3466666666666667777777777664
No 63
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=25.06 E-value=86 Score=21.76 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021219 243 ISALQDRLKENEIRLAMLTD 262 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~ 262 (316)
++.|++|+++-+.+|+.|+.
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566655554444444433
No 64
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=25.03 E-value=41 Score=23.43 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 021219 248 DRLKENEIRLAMLTDEAKSLESEAF 272 (316)
Q Consensus 248 dRL~~Nk~Rl~~Lq~EkeqL~~el~ 272 (316)
..++.-+.|++.|+.+.++|+..++
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466677788888888888877764
No 65
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=24.90 E-value=49 Score=22.28 Aligned_cols=25 Identities=24% Similarity=0.338 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 021219 249 RLKENEIRLAMLTDEAKSLESEAFK 273 (316)
Q Consensus 249 RL~~Nk~Rl~~Lq~EkeqL~~el~~ 273 (316)
|..|-+.++.+|-.++..|+.|+..
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~R 25 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVAR 25 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHH
Confidence 4456778899999999999999864
No 66
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=24.69 E-value=70 Score=21.55 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 021219 249 RLKENEIRLAMLTDEAKSLESEAFK 273 (316)
Q Consensus 249 RL~~Nk~Rl~~Lq~EkeqL~~el~~ 273 (316)
|..|-+-++++|-.++..|+.|+..
T Consensus 1 RMnQLEdKvEeLl~~~~~Le~EV~R 25 (33)
T 3c3g_A 1 RMKXIEXKLXEIXSKXYHXENXLAR 25 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhhHHHHHHHH
Confidence 4567778889999999999999864
No 67
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=24.25 E-value=1.2e+02 Score=23.15 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESE 270 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~e 270 (316)
++.||.+++..+.+-..++.|.+.|...
T Consensus 23 v~~le~~Le~s~~~q~~~~~Elk~~~e~ 50 (72)
T 3cve_A 23 LSEMEQRLEKSQSEQDAFRSNLKTLLEI 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444555555555443
No 68
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=24.19 E-value=1.2e+02 Score=24.96 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSL 267 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL 267 (316)
+.+|+.-|.+.+.+++.|+.+..+|
T Consensus 6 ~~al~~eL~~~~~ei~~L~~ei~eL 30 (106)
T 4e61_A 6 LVAIQAELTKSQETIGSLNEEIEQY 30 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 69
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=24.06 E-value=1.8e+02 Score=22.16 Aligned_cols=31 Identities=10% Similarity=0.101 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021219 242 AISALQDRLKENEIRLAMLTDEAKSLESEAF 272 (316)
Q Consensus 242 LLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~ 272 (316)
....|+++++.-+.+++.|+...+.|+..+.
T Consensus 76 ~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 106 (109)
T 1r8d_A 76 RKAALQSQKEILMKKKQRMDEMIQTIDRTLL 106 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888889999988888887763
No 70
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=24.03 E-value=1.2e+02 Score=23.53 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
++.||.++++.+.+=..++.|.+.|...+
T Consensus 29 v~~le~~Le~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 29 LRAMERSLEEARAERERARAEVGRAAQLL 57 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555455555555554433
No 71
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=23.98 E-value=2.3e+02 Score=27.58 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
++.|+.+++.|+.+|+.|+.+..+|+..+
T Consensus 107 i~~l~~~~~~~~~~i~~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 107 IQQLTDMHIMNSNKITQLKQKIAQLESHC 135 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 66788888888888888888888887655
No 72
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=23.71 E-value=53 Score=26.11 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021219 249 RLKENEIRLAMLTDEAKSLESEAFKG 274 (316)
Q Consensus 249 RL~~Nk~Rl~~Lq~EkeqL~~el~~g 274 (316)
|.++.+.+++.|++|.+.|++|++..
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel~~L 33 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEVARL 33 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666666543
No 73
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=23.59 E-value=77 Score=29.97 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEAFK 273 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~ 273 (316)
++.|++.++.++.+|++|+.+..+|+..+..
T Consensus 20 i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~~ 50 (319)
T 1fzc_C 20 IRYLQEIYNSNNQKIVNLKEKVAQLEAQCQE 50 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5667888888899999999999999887743
No 74
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=23.47 E-value=61 Score=26.14 Aligned_cols=33 Identities=15% Similarity=0.105 Sum_probs=24.5
Q ss_pred cccccceeEEEEeeecCccccccEEEEEEecCCCCccc
Q 021219 4 LLDTGFIGLIFSCFSEDANKVGRIQVIAFQSSDGKQNH 41 (316)
Q Consensus 4 ~ld~gfvGlIFScf~~d~~k~griqviaFQs~~g~~~~ 41 (316)
..++|++.+|+|+... +...+.||+..+|+-..
T Consensus 98 ~~~~~~~~lIvs~~~~-----~~~~~~af~~~~~~~~e 130 (146)
T 2kks_A 98 AFDPSLSYLIISLAEP-----QKPVCKSFLIKKDGVDE 130 (146)
T ss_dssp CCSSSCEEEEEECSCS-----SSCEEEEEEECSSCEEE
T ss_pred hhcCCCeEEEEEccCC-----CceEEEEEEEeCCeEEE
Confidence 3468999999999762 24578999997775433
No 75
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=23.46 E-value=1.1e+02 Score=24.65 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
|.-|++|++....+...|..+++.|+.++
T Consensus 85 l~el~~rleeeee~~~~L~~~kkkle~e~ 113 (129)
T 2fxo_A 85 VKEMNKRLEDEEEMNAELTAKKRKLEDEC 113 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55577888888888888888888887776
No 76
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=23.44 E-value=1.1e+02 Score=24.66 Aligned_cols=29 Identities=14% Similarity=0.160 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021219 244 SALQDRLKENEIRLAMLTDEAKSLESEAF 272 (316)
Q Consensus 244 q~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~ 272 (316)
..|..++++-+.+++.|+++.++|+.|+.
T Consensus 85 ~~l~~~~~~e~~~~~~L~~~i~~Le~el~ 113 (117)
T 3kin_B 85 EEWKKKYEKEKEKNKALKSVIQHLEVELN 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777888888888888888874
No 77
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=22.89 E-value=1.3e+02 Score=20.37 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 244 SALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 244 q~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
.-|||+.++--.+-..|+.|.+.|...+
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3467777776666677777777666655
No 78
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.77 E-value=95 Score=21.46 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021219 250 LKENEIRLAMLTDEAKSL 267 (316)
Q Consensus 250 L~~Nk~Rl~~Lq~EkeqL 267 (316)
+..-+.+++.|++||-+|
T Consensus 17 i~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 17 ILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344445555555444
No 79
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=22.61 E-value=1.5e+02 Score=21.29 Aligned_cols=28 Identities=25% Similarity=0.230 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 244 SALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 244 q~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
..|+.....-+.+++.|+.|+..|...+
T Consensus 33 ~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 33 DQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666667777777777776655
No 80
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=22.55 E-value=1.4e+02 Score=23.36 Aligned_cols=35 Identities=11% Similarity=0.086 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021219 239 LSPAISALQDRLKENEIRLAMLTDEAKSLESEAFK 273 (316)
Q Consensus 239 ~~PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~ 273 (316)
+.=-+..|+.-...-+.+|++|+.|...|...+.+
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345677888888888888888888888888744
No 81
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=22.44 E-value=95 Score=31.02 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=26.1
Q ss_pred HHHHHHHHhhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021219 231 MCKLIEYCLSPAISA---------LQDRLKENEIRLAMLTDEAKSLESEAFK 273 (316)
Q Consensus 231 LC~LmE~~~~PLLq~---------LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~ 273 (316)
-.+-.+..+.||+.| +-.+.+.-+.+|+.|+++.+++++++..
T Consensus 154 ~v~~~S~Aa~~Lc~WV~A~~~Y~~l~~eV~pLk~eLk~lE~eL~e~e~eL~~ 205 (536)
T 3err_A 154 IVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQKLEDDAKDNQQKLEA 205 (536)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555 4455666677777777777777777753
No 82
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=22.34 E-value=1.1e+02 Score=26.19 Aligned_cols=34 Identities=15% Similarity=0.207 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021219 240 SPAISALQDRLKENEIRLAMLTDEAKSLESEAFK 273 (316)
Q Consensus 240 ~PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~ 273 (316)
.-.|..+-+||+.-.+||++|..+.++|.++...
T Consensus 97 ed~L~~~laqLe~ls~qL~~ls~~v~~L~~q~~~ 130 (140)
T 3iyn_Q 97 DDKLTALLAQLDSLTRELNVVSQQLLDLRQQVSA 130 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566677888888888888888888887743
No 83
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=22.02 E-value=1e+02 Score=23.53 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEAFKGS 275 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~gs 275 (316)
|..|-+-+...+..|..|+++.+.|.++++...
T Consensus 30 IeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 30 LTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444555566666677777777776665443
No 84
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=21.63 E-value=87 Score=24.56 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 021219 250 LKENEIRLAMLTDEAKSLESEAF 272 (316)
Q Consensus 250 L~~Nk~Rl~~Lq~EkeqL~~el~ 272 (316)
-.+.+.++..|+.|.++|.+++.
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~ 60 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVE 60 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555543
No 85
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=21.58 E-value=72 Score=21.83 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 021219 249 RLKENEIRLAMLTDEAKSLESEAFK 273 (316)
Q Consensus 249 RL~~Nk~Rl~~Lq~EkeqL~~el~~ 273 (316)
|..|-+-++++|..++..|+.|+..
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~R 26 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVAR 26 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHH
Confidence 6677788889999999999988854
No 86
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=21.56 E-value=2.9e+02 Score=22.34 Aligned_cols=31 Identities=13% Similarity=0.142 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021219 242 AISALQDRLKENEIRLAMLTDEAKSLESEAF 272 (316)
Q Consensus 242 LLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~ 272 (316)
..+.|+.++++-+.++++|++..+.|...+.
T Consensus 82 ~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~ 112 (142)
T 3gp4_A 82 RAELLKKQRIELKNRIDVMQEALDRLDFKID 112 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777777777666553
No 87
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=21.52 E-value=1.4e+02 Score=23.21 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEAF 272 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~ 272 (316)
|+.|=|||+-=--++..|+++.+.|+.++.
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~ 40 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELE 40 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888888888888888774
No 88
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=21.46 E-value=1e+02 Score=23.29 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 021219 258 AMLTDEAKSLESEA 271 (316)
Q Consensus 258 ~~Lq~EkeqL~~el 271 (316)
..|+.+.+.|..|+
T Consensus 53 ~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 53 DQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 89
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=21.42 E-value=1.5e+02 Score=23.26 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021219 246 LQDRLKENEIRLAMLTDEAKSL 267 (316)
Q Consensus 246 LEdRL~~Nk~Rl~~Lq~EkeqL 267 (316)
+-+.++.-+..+..|++++..|
T Consensus 18 avdtI~lLqmEieELKekN~~L 39 (81)
T 2jee_A 18 AIDTITLLQMEIEELKEKNNSL 39 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 90
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=21.39 E-value=2.4e+02 Score=28.02 Aligned_cols=29 Identities=7% Similarity=0.135 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
|..|++.+++++.+|+.|+....++...+
T Consensus 170 i~~L~~~~~~l~~ki~~l~~~~~~~~~~~ 198 (464)
T 1m1j_B 170 LRVLRAVIDSLHKKIQKLENAIATQTDYC 198 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55666777777777777777777766655
No 91
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=21.36 E-value=2.3e+02 Score=26.35 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021219 230 SMCKLIEYCLSPAISALQDRLKENEIRLAMLTDEAKSLESEAF 272 (316)
Q Consensus 230 SLC~LmE~~~~PLLq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~ 272 (316)
.+.-|++..-.-.-|. +.|+++.+-++..|..+.+.+++|++
T Consensus 426 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 426 TVMALMASLDAEKAQG-QKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555553 35677777677777776666666664
No 92
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=20.95 E-value=1.1e+02 Score=23.09 Aligned_cols=23 Identities=9% Similarity=0.112 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021219 245 ALQDRLKENEIRLAMLTDEAKSL 267 (316)
Q Consensus 245 ~LEdRL~~Nk~Rl~~Lq~EkeqL 267 (316)
.|..+++....+++.|+.++..+
T Consensus 12 ~lq~~~~~l~~q~~~l~~~~~e~ 34 (107)
T 1fxk_A 12 QLQQQAQAISVQKQTVEMQINET 34 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 93
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=20.66 E-value=93 Score=21.05 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 021219 249 RLKENEIRLAMLTDEAKSLESEAFK 273 (316)
Q Consensus 249 RL~~Nk~Rl~~Lq~EkeqL~~el~~ 273 (316)
|..|-+-++++|-.++..|+.|+..
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~R 26 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXAR 26 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 5667788889999999999998864
No 94
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Probab=20.39 E-value=1e+02 Score=29.04 Aligned_cols=31 Identities=10% Similarity=0.127 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEAFK 273 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~ 273 (316)
|..|+..+++.+.+|+.|+.+.++++..+.+
T Consensus 32 I~~Lq~~le~l~~KIq~Le~~v~~~~~~~~~ 62 (328)
T 1fzc_B 32 LRVLRSILENLRSKIQKLESDVSAQMEYCRT 62 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 5668889999999999999999988877643
Done!