Query 021219
Match_columns 316
No_of_seqs 57 out of 59
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 14:29:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021219.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021219hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yf2a2 d.287.1.2 (A:221-425) 77.6 1.7 0.00013 32.3 5.3 32 243-274 168-199 (205)
2 d1ydxa1 d.287.1.2 (A:1-193) Bi 71.3 3.1 0.00023 31.2 5.4 33 243-275 153-185 (193)
3 d1ydxa2 d.287.1.2 (A:194-374) 64.5 4.6 0.00033 30.1 5.0 31 243-273 148-178 (181)
4 d1yf2a1 d.287.1.2 (A:1-220) Bi 55.9 6.9 0.00051 30.0 4.8 34 243-276 178-211 (220)
5 d1nkpa_ a.38.1.1 (A:) Myc prot 50.6 11 0.00078 26.8 4.8 32 243-274 54-85 (88)
6 d1nkpb_ a.38.1.1 (B:) Max prot 38.5 27 0.0019 24.3 5.2 32 243-274 49-80 (83)
7 d1nlwa_ a.38.1.1 (A:) Mad prot 35.8 30 0.0022 23.8 5.1 30 243-272 49-78 (79)
8 d2oqea3 d.17.2.1 (A:116-236) C 24.2 27 0.002 26.6 3.3 40 12-51 41-80 (121)
9 d3dy8a1 a.211.1.2 (A:182-505) 24.0 2E+02 0.014 24.3 10.1 88 174-267 219-319 (324)
10 d1fxka_ a.2.5.1 (A:) Prefoldin 22.3 66 0.0048 23.1 5.1 27 245-271 76-102 (107)
11 d1q08a_ a.6.1.3 (A:) Transcrip 22.1 69 0.0051 22.6 5.1 29 244-272 42-70 (94)
No 1
>d1yf2a2 d.287.1.2 (A:221-425) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=77.58 E-value=1.7 Score=32.31 Aligned_cols=32 Identities=13% Similarity=0.209 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEAFKG 274 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~g 274 (316)
|..+.++.+.++.+++.|++.++.|++++++|
T Consensus 168 l~~id~~i~~~~~~~~~l~~~k~~Ll~~l~tG 199 (205)
T d1yf2a2 168 LSSVDKSIELKKQKKEKLQRMKKKIMELLLTG 199 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44578899999999999999999999999876
No 2
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=71.34 E-value=3.1 Score=31.22 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEAFKGS 275 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~gs 275 (316)
|..|.++++.++..++.|++.++.|++++++..
T Consensus 153 l~~ld~~i~~~~~~i~~l~~~~~~ll~~lft~~ 185 (193)
T d1ydxa1 153 LSVFDERLENLASLIEINRKLRDEYAHKLFSLD 185 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 567889999999999999999999999998653
No 3
>d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=64.54 E-value=4.6 Score=30.12 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEAFK 273 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~ 273 (316)
+..+.++++.++.+++.|++.++.|++++|-
T Consensus 148 l~~~d~~i~~~~~~i~~l~~lk~~Ll~~lF~ 178 (181)
T d1ydxa2 148 VFLLDQKLDQYKKELSSLTVIRDTLLKKLFP 178 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3358899999999999999999999999974
No 4
>d1yf2a1 d.287.1.2 (A:1-220) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=55.85 E-value=6.9 Score=30.01 Aligned_cols=34 Identities=12% Similarity=0.136 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEAFKGSD 276 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~gs~ 276 (316)
+..|.++++.++.+++.|++.++.|++++++|.-
T Consensus 178 l~~i~~~i~~~~~~i~~L~~~r~~ll~~l~tg~l 211 (220)
T d1yf2a1 178 LTKIDEGIEIIEKSINKLERIKKGLMHKLLTKGI 211 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4468899999999999999999999999998643
No 5
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.60 E-value=11 Score=26.77 Aligned_cols=32 Identities=13% Similarity=0.042 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEAFKG 274 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~g 274 (316)
|.+|+.+++..+..+..|+.+.++|.+++.++
T Consensus 54 I~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L 85 (88)
T d1nkpa_ 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67888888888889999999999999988643
No 6
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.48 E-value=27 Score=24.29 Aligned_cols=32 Identities=13% Similarity=0.114 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEAFKG 274 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~~g 274 (316)
|..|++.+......+..|+.+.+.|.+++.+.
T Consensus 49 I~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L 80 (83)
T d1nkpb_ 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888888888999999999999998543
No 7
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.81 E-value=30 Score=23.76 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021219 243 ISALQDRLKENEIRLAMLTDEAKSLESEAF 272 (316)
Q Consensus 243 Lq~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~ 272 (316)
|..|+..++.-......|+.+.+.|.+++.
T Consensus 49 I~~L~~~~~~l~~~~~~L~~~~~~L~~~l~ 78 (79)
T d1nlwa_ 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567788888888888889999988888773
No 8
>d2oqea3 d.17.2.1 (A:116-236) Copper amine oxidase, domains 1 and 2 {Yeast (Hansenula polymorpha) [TaxId: 4905]}
Probab=24.19 E-value=27 Score=26.62 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=26.4
Q ss_pred EEEEeeecCccccccEEEEEEecCCCCccccccccccccC
Q 021219 12 LIFSCFSEDANKVGRIQVIAFQSSDGKQNHISKPIALLPV 51 (316)
Q Consensus 12 lIFScf~~d~~k~griqviaFQs~~g~~~~~~~pi~~~p~ 51 (316)
|....|.++..-.--+|++||--.++..|.-.+||.+.|+
T Consensus 41 W~~G~~~~~~~~rRl~~~~~~~r~~~~~N~YA~Piel~~v 80 (121)
T d2oqea3 41 WTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLDFCPI 80 (121)
T ss_dssp EECCCCTTTTTSSCEEEEEEEECSSTTSCGGGCBCSCEEE
T ss_pred ccccccCCCCCCceEEEEEEeeecCCCCCcccceeceEEE
Confidence 3344554332222228999998778888988899986653
No 9
>d3dy8a1 a.211.1.2 (A:182-505) High-affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, PDE9A {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.04 E-value=2e+02 Score=24.29 Aligned_cols=88 Identities=16% Similarity=0.169 Sum_probs=50.6
Q ss_pred CCCccccCCcchhhHHHhHHHHHH--HHHHHHHHHHhhccCCCCCccceeecchhhHhHHHHHHHHHhhHHHHHHH----
Q 021219 174 TSSLLKLDSPLTSFTDLQRVLYEE--ERAAYNQAIMQNMSDGKVHPLTYIHHTSTYQASMCKLIEYCLSPAISALQ---- 247 (316)
Q Consensus 174 ~~ti~k~~~~LeSlv~Lp~IL~qE--E~eAY~kA~~qs~~~g~ldpLTkIHN~SVYT~SLC~LmE~~~~PLLq~LE---- 247 (316)
...++..+.++.-...--..+++| .+.-.++.. +-.+.|+---- .....++.+-.++.++.||.+.|.
T Consensus 219 ~ADis~~~rp~~~~~~W~~~~~~Ef~~Qgd~E~~~-----gl~~s~~~dr~-~~~~~~~Qi~Fi~~vv~Pl~~~l~~~~p 292 (324)
T d3dy8a1 219 CCDISNEVRPMEVAEPWVDCLLEEYFMQSDREKSE-----GLPVAPFMDRD-KVTKATAQIGFIKFVLIPMFETVTKLFP 292 (324)
T ss_dssp HHHTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHT-----TCCCCGGGCTT-TCCHHHHHHHHHHHTHHHHHHHHHHHCT
T ss_pred HHHccccccChHHHHHHHHHHHHHHHHHHHHHHHc-----CCCCCcccCcc-cCCcHHHHHHHHHHHHHHHHHHHHHHCh
Confidence 345555555666666666677766 222333222 22344443321 223457788889999999977643
Q ss_pred -------HHHHHHHHHHHHHHHHHHHH
Q 021219 248 -------DRLKENEIRLAMLTDEAKSL 267 (316)
Q Consensus 248 -------dRL~~Nk~Rl~~Lq~EkeqL 267 (316)
+.++.|+.+-+.++++-++.
T Consensus 293 ~l~~~~~~~l~~N~~~W~~~~~~~~~~ 319 (324)
T d3dy8a1 293 MVEEIMLQPLWESRDRYEELKRIDDAM 319 (324)
T ss_dssp THHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777766665554443
No 10
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=22.27 E-value=66 Score=23.11 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021219 245 ALQDRLKENEIRLAMLTDEAKSLESEA 271 (316)
Q Consensus 245 ~LEdRL~~Nk~Rl~~Lq~EkeqL~~el 271 (316)
.|+.+++.-+.+++.|+++.++|++++
T Consensus 76 ~l~~~i~~l~~q~~~l~~~l~~~~~~l 102 (107)
T d1fxka_ 76 TLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555444
No 11
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=22.14 E-value=69 Score=22.63 Aligned_cols=29 Identities=34% Similarity=0.394 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021219 244 SALQDRLKENEIRLAMLTDEAKSLESEAF 272 (316)
Q Consensus 244 q~LEdRL~~Nk~Rl~~Lq~EkeqL~~el~ 272 (316)
+.++.++++-+.|+++|+.-.++|+....
T Consensus 42 ~l~~~kl~~i~~kI~~L~~l~~~L~~l~~ 70 (94)
T d1q08a_ 42 GIVQERLQEVEARIAELQSMQRSLQRLND 70 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44689999999999999888888876554
Done!