BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021220
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 72/103 (69%), Gaps = 1/103 (0%)
Query: 14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEE 73
KG WTKEED+++I +K +G W + K R GK CR RW N+L P++K+ ++TEE
Sbjct: 7 KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG-RLGKQCRERWHNHLNPEVKKSSWTEE 65
Query: 74 EDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKL 116
ED +I H +LGN+W+ IA LPGRTDN +KN+WN+ IKRK+
Sbjct: 66 EDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 73/104 (70%), Gaps = 1/104 (0%)
Query: 13 NKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTE 72
NKG WTKEED+R+I +++ +G W + K R GK CR RW N+L P++K+ ++TE
Sbjct: 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTE 84
Query: 73 EEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKL 116
EED +I H LGN+W+ IA LPGRTDN +KN+WN+ ++RK+
Sbjct: 85 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 71/103 (68%), Gaps = 1/103 (0%)
Query: 14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEE 73
KG WTKEED+R+I ++ +G W + K R GK CR RW N+L P++K+ ++TEE
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 74 EDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKL 116
ED +I H LGN+W+ IA LPGRTDN IKN+WN+ ++RK+
Sbjct: 63 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 71/103 (68%), Gaps = 1/103 (0%)
Query: 14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEE 73
KG WTKEED+R+I ++ +G W + K R GK CR RW N+L P++K+ ++TEE
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 74 EDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKL 116
ED +I H LGN+W+ IA LPGRTDN IKN+WN+ ++RK+
Sbjct: 63 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 71/103 (68%), Gaps = 1/103 (0%)
Query: 14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEE 73
KG WTKEED+R+I ++ +G W + K R GK CR RW N+L P++K+ ++TEE
Sbjct: 58 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEE 116
Query: 74 EDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKL 116
ED +I H LGN+W+ IA LPGRTDN IKN+WN+ ++RK+
Sbjct: 117 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 65 LKRGNFTEEEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYW 108
L + +T EEDE + G + W +IA LP RTD + ++ W
Sbjct: 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRW 48
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 64/105 (60%), Gaps = 5/105 (4%)
Query: 14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLL--RCGKSCRLRWINYLRPDLKRGNFT 71
KG +T+ ED+ + Y+K +G W P+ L R K CR RW N+L P + + +T
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 72 EEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKL 116
EEDE I + LG+KWS+IA +PGRTDN IKN WN+ I +++
Sbjct: 59 PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 67 RGNFTEEEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQ 124
+G FTE ED+LI + G W I + LP R+ + + W H+ + P+
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 13 NKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTE 72
K +T EEDE L + HG W+ + A R + CR RW NYL P + +T
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSD-WKMIA-ATFPNRNARQCRDRWKNYLAPSISHTPWTA 67
Query: 73 EEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPL 129
EED L++ G +W++IA PGRTD IKN W T I KL GI PQT + L
Sbjct: 68 EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT-ISNKL---GI-PQTQQML 119
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 64.7 bits (156), Expect = 6e-11, Method: Composition-based stats.
Identities = 28/52 (53%), Positives = 40/52 (76%)
Query: 65 LKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKL 116
+K+ ++TEEED +I H LGN+W+ IA LPGRTDN IKN+WN+ ++RK+
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 64.3 bits (155), Expect = 8e-11, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 41/53 (77%)
Query: 64 DLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKL 116
++K+ ++TEEED ++ H LGN+W+ IA LPGRTDN IKN+WN+ ++RK+
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEE 73
K +T+EED +L + +G W + + + R + CR RW NY+ P L+ ++ E
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 74 EDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYW 108
ED L+ ++ G KW+ I+ L R+DN I+N W
Sbjct: 60 EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 47.0 bits (110), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPD 64
KG WTKEED+R+I ++ +G W + K R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 35.4 bits (80), Expect = 0.039, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 65 LKRGNFTEEEDELIINFHSLLGNK-WSLIAARLPGRTDNEIKNYWNTHI 112
L +G +T+EED+ +I G K WS+IA L GR + + W+ H+
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 47.0 bits (110), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPD 64
KG WTKEED+R+I ++ +G W + K R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 35.4 bits (80), Expect = 0.041, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 65 LKRGNFTEEEDELIINFHSLLGNK-WSLIAARLPGRTDNEIKNYWNTHI 112
L +G +T+EED+ +I G K WS+IA L GR + + W+ H+
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPD 64
KG WTKEED+RLI ++ +G W + K R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 65 LKRGNFTEEEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYWNTHI 112
L +G +T+EED+ +I G +WS+IA L GR + + W+ H+
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 16 AWTKEEDERLINYIKVHGEGCWRSLPKAAGLL--RCGKSCRLRWINYLRPDLKRGNFT 71
W EDE L + +G+ W + A LL + K C+ RW +L P +K+ ++
Sbjct: 11 VWRNTEDEILKAAVMKYGKNQW---SRIASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLL--RCGKSCRLRWINYLRPD 64
K WT+EEDE+L ++ +G W+ + A L R C+ RW L P+
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVI---ANYLPNRTDVQCQHRWQKVLNPE 52
Score = 28.5 bits (62), Expect = 5.0, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 65 LKRGNFTEEEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYW 108
L + +T EEDE + G + W +IA LP RTD + ++ W
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRW 45
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLL--RCGKSCRLRWINYLRPD 64
K WT+EEDE+L ++ +G W+ + A L R C+ RW L P+
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVI---ANYLPNRTDVQCQHRWQKVLNPE 52
Score = 28.5 bits (62), Expect = 5.0, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 65 LKRGNFTEEEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYW 108
L + +T EEDE + G + W +IA LP RTD + ++ W
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRW 45
>pdb|3TED|A Chain A, Crystal Structure Of The Chd1 Dna-Binding Domain In
Complex With A Dna Duplex
Length = 271
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 17 WTKEEDERLINYIKVHGEGCWRSL 40
WTKEEDE+L+ + +G G W +
Sbjct: 172 WTKEEDEKLLIGVFKYGYGSWTQI 195
>pdb|2XB0|X Chain X, Dna-Binding Domain From Saccharomyces Cerevisiae
Chromatin- Remodelling Protein Chd1
Length = 270
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 17 WTKEEDERLINYIKVHGEGCWRSL 40
WTKEEDE+L+ + +G G W +
Sbjct: 171 WTKEEDEKLLIGVFKYGYGSWTQI 194
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 29.6 bits (65), Expect = 2.2, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 TNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
+ K WT EEDE+L ++ G+ W+ L R + C+ RW+ L
Sbjct: 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVL 54
Score = 28.1 bits (61), Expect = 7.1, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 70 FTEEEDELIINFHSLLGNK-WSLIAARLPGRTDNEIKNYW 108
+T EEDE + G + W +A+ P RTD + + W
Sbjct: 11 WTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRW 50
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 29.3 bits (64), Expect = 2.9, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 70 FTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQT 125
+T EE EL + G +W+ I+ + RT ++K+Y + K K+ G+D +T
Sbjct: 12 WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKET 66
>pdb|1IGN|A Chain A, Dna-Binding Domain Of Rap1 In Complex With Telomeric Dna
Site
pdb|1IGN|B Chain B, Dna-Binding Domain Of Rap1 In Complex With Telomeric Dna
Site
Length = 246
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 14/64 (21%)
Query: 63 PDLKRGNFTEEEDELIINF----------HSLLGNKWSLIAARLPGRTDNEIKNYWNTHI 112
P + +FT+EEDE I++ H+L + I+ +P T N I++ + ++
Sbjct: 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTL----YDEISHYVPNHTGNSIRHRFRVYL 59
Query: 113 KRKL 116
++L
Sbjct: 60 SKRL 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,306,744
Number of Sequences: 62578
Number of extensions: 362916
Number of successful extensions: 723
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 667
Number of HSP's gapped (non-prelim): 39
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)