Query 021220
Match_columns 316
No_of_seqs 227 out of 1478
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 14:30:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021220.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021220hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zqc_A MYB3; transcription-DNA 100.0 3.2E-33 1.1E-37 235.4 11.2 114 14-128 2-115 (131)
2 1gv2_A C-MYB, MYB proto-oncoge 100.0 2.1E-33 7.3E-38 227.4 8.8 105 11-116 1-105 (105)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 3.2E-33 1.1E-37 227.9 7.5 104 14-118 1-104 (107)
4 1h8a_C AMV V-MYB, MYB transfor 100.0 2E-32 6.9E-37 229.3 8.2 108 8-116 21-128 (128)
5 3osg_A MYB21; transcription-DN 100.0 2.6E-32 8.9E-37 228.6 8.5 106 8-115 5-110 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 3.4E-32 1.2E-36 235.5 3.4 142 11-153 3-145 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 4.4E-30 1.5E-34 222.2 8.1 108 8-116 52-159 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 2.3E-23 7.7E-28 174.3 4.2 112 40-152 1-113 (128)
9 2dim_A Cell division cycle 5-l 99.8 3.7E-21 1.3E-25 145.5 0.9 67 8-75 3-69 (70)
10 2dim_A Cell division cycle 5-l 99.7 2.3E-18 7.9E-23 130.1 7.5 65 62-126 4-69 (70)
11 2llk_A Cyclin-D-binding MYB-li 99.7 2.8E-18 9.5E-23 131.7 5.5 58 54-112 10-67 (73)
12 2cu7_A KIAA1915 protein; nucle 99.7 1.6E-17 5.4E-22 126.4 7.6 66 61-127 3-68 (72)
13 1ign_A Protein (RAP1); RAP1,ye 99.7 1.3E-17 4.3E-22 153.1 7.8 124 9-133 3-229 (246)
14 2din_A Cell division cycle 5-l 99.7 2.5E-17 8.7E-22 123.0 6.6 60 60-120 2-61 (66)
15 2d9a_A B-MYB, MYB-related prot 99.7 8.4E-17 2.9E-21 118.0 6.4 56 62-117 3-59 (60)
16 2juh_A Telomere binding protei 99.7 1.3E-17 4.4E-22 139.3 1.9 83 8-91 11-103 (121)
17 1guu_A C-MYB, MYB proto-oncoge 99.6 2.9E-16 9.9E-21 111.8 6.2 50 65-114 1-51 (52)
18 1ity_A TRF1; helix-turn-helix, 99.6 5E-16 1.7E-20 117.0 7.8 61 61-121 4-67 (69)
19 1gvd_A MYB proto-oncogene prot 99.6 4.7E-16 1.6E-20 110.9 6.4 50 65-114 1-51 (52)
20 2roh_A RTBP1, telomere binding 99.6 1.2E-16 3.9E-21 133.7 3.6 79 9-88 26-114 (122)
21 2d9a_A B-MYB, MYB-related prot 99.6 1.3E-16 4.3E-21 117.0 2.1 57 9-66 3-59 (60)
22 1gvd_A MYB proto-oncogene prot 99.6 1.7E-16 5.7E-21 113.2 2.0 52 12-64 1-52 (52)
23 1w0t_A Telomeric repeat bindin 99.6 1.2E-15 4.2E-20 109.3 6.3 50 66-115 1-53 (53)
24 3osg_A MYB21; transcription-DN 99.6 7.7E-16 2.6E-20 128.5 4.5 94 62-155 6-99 (126)
25 1gv2_A C-MYB, MYB proto-oncoge 99.6 6.8E-16 2.3E-20 124.4 4.1 88 64-151 1-89 (105)
26 1x41_A Transcriptional adaptor 99.6 1.8E-15 6.3E-20 111.2 6.0 53 62-114 3-56 (60)
27 1guu_A C-MYB, MYB proto-oncoge 99.6 2.7E-16 9.3E-21 112.0 1.1 52 12-64 1-52 (52)
28 1ity_A TRF1; helix-turn-helix, 99.6 3.8E-16 1.3E-20 117.7 1.6 63 8-71 4-68 (69)
29 2yum_A ZZZ3 protein, zinc fing 99.6 3.8E-15 1.3E-19 113.7 6.7 59 62-120 3-67 (75)
30 3sjm_A Telomeric repeat-bindin 99.6 4.2E-15 1.4E-19 111.0 6.5 52 65-116 9-63 (64)
31 2k9n_A MYB24; R2R3 domain, DNA 99.5 2.9E-15 1E-19 121.5 3.5 69 67-135 1-70 (107)
32 2elk_A SPCC24B10.08C protein; 99.5 1.6E-14 5.5E-19 105.6 6.3 50 63-112 5-56 (58)
33 3zqc_A MYB3; transcription-DNA 99.5 5.1E-15 1.8E-19 124.2 3.5 90 67-156 2-92 (131)
34 3sjm_A Telomeric repeat-bindin 99.5 2.3E-15 7.8E-20 112.5 0.6 56 11-66 8-64 (64)
35 2ltp_A Nuclear receptor corepr 99.2 2.2E-15 7.4E-20 119.3 0.0 58 60-117 9-66 (89)
36 1x41_A Transcriptional adaptor 99.5 4.5E-15 1.5E-19 109.1 1.5 54 10-64 4-57 (60)
37 1w0t_A Telomeric repeat bindin 99.5 8.4E-15 2.9E-19 104.9 0.7 49 13-62 1-51 (53)
38 2yum_A ZZZ3 protein, zinc fing 99.4 9.5E-15 3.3E-19 111.5 -0.1 62 8-70 2-68 (75)
39 2elk_A SPCC24B10.08C protein; 99.4 3E-14 1E-18 104.1 1.4 51 11-61 6-56 (58)
40 2din_A Cell division cycle 5-l 99.4 1.1E-14 3.6E-19 108.8 -2.1 58 8-68 3-60 (66)
41 2cqr_A RSGI RUH-043, DNAJ homo 99.4 4.6E-13 1.6E-17 102.5 6.2 51 63-113 14-68 (73)
42 2cu7_A KIAA1915 protein; nucle 99.4 5.2E-14 1.8E-18 106.9 -0.3 58 8-67 3-60 (72)
43 2yus_A SWI/SNF-related matrix- 99.4 5.5E-13 1.9E-17 103.5 5.0 48 64-111 15-62 (79)
44 1ign_A Protein (RAP1); RAP1,ye 99.4 7.1E-13 2.4E-17 121.7 6.6 70 64-134 5-80 (246)
45 1x58_A Hypothetical protein 49 99.3 1.7E-12 5.9E-17 96.3 6.3 50 66-115 7-59 (62)
46 2juh_A Telomere binding protei 99.3 5.6E-13 1.9E-17 111.2 3.9 54 61-114 11-69 (121)
47 2aje_A Telomere repeat-binding 99.3 4.6E-12 1.6E-16 103.3 7.6 54 63-116 9-67 (105)
48 2roh_A RTBP1, telomere binding 99.3 2.7E-12 9.3E-17 107.2 6.3 63 63-125 27-99 (122)
49 2ckx_A NGTRF1, telomere bindin 99.3 3.4E-12 1.2E-16 100.0 6.3 48 68-115 1-53 (83)
50 2aje_A Telomere repeat-binding 99.3 7.8E-13 2.7E-17 107.9 2.7 80 8-87 7-95 (105)
51 2ckx_A NGTRF1, telomere bindin 99.3 9.9E-13 3.4E-17 103.1 2.9 69 15-84 1-79 (83)
52 2llk_A Cyclin-D-binding MYB-li 99.2 1.6E-12 5.5E-17 99.6 2.1 57 7-67 16-72 (73)
53 2yus_A SWI/SNF-related matrix- 99.2 2E-12 7E-17 100.3 1.9 52 7-60 11-62 (79)
54 2cjj_A Radialis; plant develop 99.2 2.8E-11 9.7E-16 96.7 6.1 50 66-115 7-60 (93)
55 2ltp_A Nuclear receptor corepr 98.8 3.4E-12 1.1E-16 100.9 0.0 55 7-63 9-63 (89)
56 2cqr_A RSGI RUH-043, DNAJ homo 99.1 6.5E-12 2.2E-16 96.2 0.6 56 6-62 10-68 (73)
57 2eqr_A N-COR1, N-COR, nuclear 99.0 5.9E-10 2E-14 82.0 6.1 48 66-113 11-58 (61)
58 3hm5_A DNA methyltransferase 1 99.0 3.8E-10 1.3E-14 90.1 5.1 67 50-120 17-88 (93)
59 2cqq_A RSGI RUH-037, DNAJ homo 98.9 2.5E-09 8.4E-14 81.6 6.5 52 64-116 5-60 (72)
60 2cjj_A Radialis; plant develop 98.8 8.2E-10 2.8E-14 88.2 -0.3 49 12-61 6-57 (93)
61 2iw5_B Protein corest, REST co 98.7 9.5E-09 3.2E-13 93.7 5.6 49 66-114 132-180 (235)
62 1x58_A Hypothetical protein 49 98.6 7E-09 2.4E-13 76.9 1.0 49 12-62 6-57 (62)
63 2eqr_A N-COR1, N-COR, nuclear 98.6 1.4E-08 4.7E-13 74.7 2.3 54 6-61 4-57 (61)
64 2xag_B REST corepressor 1; ami 98.5 6.2E-08 2.1E-12 97.0 5.4 47 68-114 381-427 (482)
65 1wgx_A KIAA1903 protein; MYB D 98.5 1.9E-07 6.5E-12 71.4 6.4 49 66-114 7-59 (73)
66 1fex_A TRF2-interacting telome 98.5 1.4E-07 4.9E-12 69.1 5.3 47 67-113 2-58 (59)
67 2cqq_A RSGI RUH-037, DNAJ homo 98.3 8.6E-08 3E-12 73.0 -0.1 52 10-63 4-58 (72)
68 2yqk_A Arginine-glutamic acid 98.1 5.5E-06 1.9E-10 61.2 7.0 49 63-111 5-54 (63)
69 2iw5_B Protein corest, REST co 98.1 5.8E-07 2E-11 82.0 1.5 52 9-62 128-179 (235)
70 1ug2_A 2610100B20RIK gene prod 98.1 4.6E-06 1.6E-10 66.0 6.2 50 69-118 35-87 (95)
71 1fex_A TRF2-interacting telome 98.1 4.8E-07 1.6E-11 66.3 0.1 48 14-62 2-58 (59)
72 1wgx_A KIAA1903 protein; MYB D 98.0 8.6E-07 2.9E-11 67.7 0.7 48 14-62 8-58 (73)
73 2lr8_A CAsp8-associated protei 97.2 9.5E-07 3.3E-11 66.4 0.0 45 69-114 16-63 (70)
74 4iej_A DNA methyltransferase 1 97.9 1.6E-05 5.6E-10 63.2 6.5 54 67-120 30-88 (93)
75 4eef_G F-HB80.4, designed hema 97.9 2.9E-06 1E-10 64.7 1.2 43 67-109 20-66 (74)
76 1ofc_X ISWI protein; nuclear p 97.8 3.8E-05 1.3E-09 73.0 7.3 99 15-114 111-275 (304)
77 4a69_C Nuclear receptor corepr 97.7 7E-05 2.4E-09 59.5 6.0 45 67-111 43-87 (94)
78 2crg_A Metastasis associated p 97.6 0.00011 3.8E-09 55.3 6.3 44 67-110 8-52 (70)
79 4eef_G F-HB80.4, designed hema 97.5 1.7E-05 5.8E-10 60.5 0.3 44 14-58 20-66 (74)
80 2yqk_A Arginine-glutamic acid 97.4 6.3E-05 2.1E-09 55.4 2.2 50 9-60 4-54 (63)
81 2xag_B REST corepressor 1; ami 97.3 5.6E-05 1.9E-09 75.7 1.3 49 11-61 377-425 (482)
82 2ebi_A DNA binding protein GT- 97.0 0.00045 1.5E-08 53.3 3.9 49 67-115 4-66 (86)
83 4b4c_A Chromodomain-helicase-D 96.7 0.003 1E-07 55.8 7.3 45 69-113 136-195 (211)
84 3hm5_A DNA methyltransferase 1 96.6 0.00049 1.7E-08 54.7 1.3 49 12-61 28-80 (93)
85 2crg_A Metastasis associated p 96.6 0.00052 1.8E-08 51.6 1.2 45 13-59 7-52 (70)
86 4a69_C Nuclear receptor corepr 96.5 0.00062 2.1E-08 54.0 1.1 44 14-59 43-86 (94)
87 1ug2_A 2610100B20RIK gene prod 96.4 0.0018 6.1E-08 51.3 3.2 57 2-59 16-79 (95)
88 2ebi_A DNA binding protein GT- 96.4 0.00018 6.2E-09 55.5 -2.5 49 13-61 3-63 (86)
89 2y9y_A Imitation switch protei 95.8 0.02 6.8E-07 55.7 7.9 101 15-115 124-292 (374)
90 2lr8_A CAsp8-associated protei 94.7 0.0017 6E-08 48.7 0.0 45 16-62 16-62 (70)
91 1irz_A ARR10-B; helix-turn-hel 94.4 0.089 3E-06 38.9 6.0 48 65-112 5-57 (64)
92 1ofc_X ISWI protein; nuclear p 94.1 0.074 2.5E-06 50.4 6.3 47 67-113 110-157 (304)
93 4b4c_A Chromodomain-helicase-D 94.0 0.043 1.5E-06 48.3 4.2 39 5-43 125-163 (211)
94 4iej_A DNA methyltransferase 1 91.6 0.045 1.6E-06 43.4 0.7 49 11-60 27-79 (93)
95 2xb0_X Chromo domain-containin 89.7 0.26 9E-06 45.8 4.2 28 15-42 169-196 (270)
96 2xb0_X Chromo domain-containin 88.2 0.3 1E-05 45.5 3.5 27 69-95 170-197 (270)
97 1irz_A ARR10-B; helix-turn-hel 78.2 0.64 2.2E-05 34.3 0.9 49 11-59 4-55 (64)
98 2y9y_A Imitation switch protei 63.9 13 0.00045 36.0 6.7 44 68-111 124-169 (374)
99 2o8x_A Probable RNA polymerase 63.7 8.4 0.00029 26.6 4.1 41 73-114 18-58 (70)
100 1ku3_A Sigma factor SIGA; heli 60.8 10 0.00034 27.0 4.2 42 73-115 13-58 (73)
101 2jrz_A Histone demethylase jar 56.0 15 0.00051 29.4 4.8 38 77-114 44-93 (117)
102 2p7v_B Sigma-70, RNA polymeras 55.8 11 0.00037 26.4 3.6 41 73-114 8-52 (68)
103 2li6_A SWI/SNF chromatin-remod 55.2 7.8 0.00027 31.0 3.0 37 78-114 54-98 (116)
104 2lm1_A Lysine-specific demethy 54.9 17 0.00059 28.3 4.9 38 77-114 48-97 (107)
105 1u78_A TC3 transposase, transp 53.7 42 0.0014 25.9 7.1 87 15-108 5-100 (141)
106 1kkx_A Transcription regulator 51.1 11 0.00039 30.6 3.4 38 78-115 53-98 (123)
107 2eqy_A RBP2 like, jumonji, at 50.9 20 0.00068 28.9 4.8 38 78-115 47-96 (122)
108 2cxy_A BAF250B subunit, HBAF25 50.1 21 0.00071 28.8 4.8 39 77-115 55-105 (125)
109 2k27_A Paired box protein PAX- 47.6 53 0.0018 26.5 7.0 91 15-110 24-134 (159)
110 3hug_A RNA polymerase sigma fa 45.9 26 0.00089 25.9 4.5 40 73-113 40-79 (92)
111 3i4p_A Transcriptional regulat 43.4 20 0.0007 29.5 3.8 45 73-118 3-48 (162)
112 2jxj_A Histone demethylase jar 43.3 15 0.00052 28.1 2.8 37 78-114 41-89 (96)
113 3e7l_A Transcriptional regulat 42.4 33 0.0011 23.9 4.3 35 73-108 19-53 (63)
114 1x3u_A Transcriptional regulat 41.8 45 0.0015 23.4 5.1 42 70-114 17-58 (79)
115 1k78_A Paired box protein PAX5 41.5 46 0.0016 26.4 5.6 93 14-111 30-142 (149)
116 1c20_A DEAD ringer protein; DN 39.8 38 0.0013 27.3 4.8 39 77-115 56-107 (128)
117 2yqf_A Ankyrin-1; death domain 39.7 38 0.0013 26.5 4.7 35 71-106 14-48 (111)
118 2kk0_A AT-rich interactive dom 39.3 34 0.0012 28.4 4.6 39 77-115 68-119 (145)
119 1ntc_A Protein (nitrogen regul 38.6 45 0.0015 24.9 4.8 37 72-109 50-86 (91)
120 1tty_A Sigma-A, RNA polymerase 37.8 37 0.0013 24.9 4.2 41 73-114 21-65 (87)
121 2rq5_A Protein jumonji; develo 37.0 41 0.0014 27.3 4.6 79 11-115 4-97 (121)
122 1or7_A Sigma-24, RNA polymeras 36.7 44 0.0015 27.2 4.9 29 85-114 155-183 (194)
123 1fse_A GERE; helix-turn-helix 35.6 49 0.0017 22.7 4.4 44 68-114 10-53 (74)
124 3cz6_A DNA-binding protein RAP 34.9 23 0.00079 30.6 2.8 28 11-41 111-146 (168)
125 2rq5_A Protein jumonji; develo 34.9 6.1 0.00021 32.2 -0.7 57 24-83 46-113 (121)
126 2of5_H Leucine-rich repeat and 34.8 36 0.0012 27.1 3.9 31 75-106 13-43 (118)
127 2of5_A Death domain-containing 34.8 38 0.0013 27.0 4.0 29 77-106 26-54 (114)
128 1je8_A Nitrate/nitrite respons 34.8 49 0.0017 24.1 4.4 43 69-114 21-63 (82)
129 3c57_A Two component transcrip 34.7 51 0.0017 24.7 4.6 43 69-114 27-69 (95)
130 2o71_A Death domain-containing 34.1 40 0.0014 26.9 4.1 29 77-106 26-54 (115)
131 3ulq_B Transcriptional regulat 33.8 66 0.0022 24.1 5.1 45 67-114 27-71 (90)
132 1ig6_A MRF-2, modulator recogn 33.0 24 0.00082 27.5 2.5 39 77-115 37-88 (107)
133 2jpc_A SSRB; DNA binding prote 32.8 60 0.0021 21.5 4.3 38 75-114 3-40 (61)
134 1tc3_C Protein (TC3 transposas 31.6 84 0.0029 19.1 4.7 38 69-108 5-42 (51)
135 2q1z_A RPOE, ECF SIGE; ECF sig 31.5 29 0.00098 28.1 2.9 29 85-114 150-178 (184)
136 1xsv_A Hypothetical UPF0122 pr 31.0 67 0.0023 25.0 4.9 39 74-113 29-67 (113)
137 3cz6_A DNA-binding protein RAP 30.2 31 0.0011 29.8 2.8 17 63-79 110-126 (168)
138 1wxp_A THO complex subunit 1; 28.9 60 0.002 25.3 4.2 31 75-106 18-48 (110)
139 1rp3_A RNA polymerase sigma fa 28.6 67 0.0023 26.8 4.8 36 77-113 194-229 (239)
140 2e1c_A Putative HTH-type trans 28.2 70 0.0024 26.6 4.8 46 72-118 26-72 (171)
141 1umq_A Photosynthetic apparatu 28.0 60 0.0021 24.3 3.9 37 71-108 39-75 (81)
142 2dbb_A Putative HTH-type trans 27.9 91 0.0031 24.8 5.3 45 73-118 9-54 (151)
143 3mzy_A RNA polymerase sigma-H 27.2 61 0.0021 25.2 4.1 28 85-113 123-150 (164)
144 2rnj_A Response regulator prot 25.8 63 0.0021 23.7 3.6 43 69-114 29-71 (91)
145 2cyy_A Putative HTH-type trans 25.0 93 0.0032 24.8 4.8 45 73-118 7-52 (151)
146 1k78_A Paired box protein PAX5 22.0 1.6E+02 0.0055 23.1 5.7 40 67-108 30-69 (149)
147 1s7o_A Hypothetical UPF0122 pr 21.2 1.1E+02 0.0037 23.9 4.4 39 74-113 26-64 (113)
148 1fad_A Protein (FADD protein); 20.5 66 0.0023 24.3 2.9 31 75-106 14-44 (99)
No 1
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=3.2e-33 Score=235.42 Aligned_cols=114 Identities=39% Similarity=0.683 Sum_probs=108.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCCCCCCCHHHHHHHHHHHHhhCCchhHHh
Q 021220 14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLLGNKWSLIA 93 (316)
Q Consensus 14 Kg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EEDe~Llelv~~~GnkWs~IA 93 (316)
||+||+|||++|+.+|..||.++|..||..|++ |+++||++||.++|+|.+++|+||+|||++|+++|.+||++|+.||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTT-SCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCC-CCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 799999999999999999999899999999987 9999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHhhhhhhhcCCCCCCCCCC
Q 021220 94 ARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRP 128 (316)
Q Consensus 94 ~~lpgRT~~qcknRW~~~lk~k~~~~~~s~~e~~~ 128 (316)
..|+|||+++|++||+++|++++....++.+...+
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~~~p 115 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLP 115 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCCCCC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCCcccccCc
Confidence 99999999999999999999999988776665444
No 2
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=2.1e-33 Score=227.41 Aligned_cols=105 Identities=49% Similarity=0.871 Sum_probs=99.3
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCCCCCCCHHHHHHHHHHHHhhCCchh
Q 021220 11 HTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLLGNKWS 90 (316)
Q Consensus 11 ~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EEDe~Llelv~~~GnkWs 90 (316)
.+++|+||+|||++|+++|.+||.++|..||+.|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||++|+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcC-CCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 368999999999999999999998899999999986 9999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHhhhhhh
Q 021220 91 LIAARLPGRTDNEIKNYWNTHIKRKL 116 (316)
Q Consensus 91 ~IA~~lpgRT~~qcknRW~~~lk~k~ 116 (316)
.||..|||||+++|++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999998764
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.98 E-value=3.2e-33 Score=227.85 Aligned_cols=104 Identities=31% Similarity=0.528 Sum_probs=100.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCCCCCCCHHHHHHHHHHHHhhCCchhHHh
Q 021220 14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLLGNKWSLIA 93 (316)
Q Consensus 14 Kg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EEDe~Llelv~~~GnkWs~IA 93 (316)
||+||+|||++|+.+|..||.++|..||..|++ |+++||++||.++|+|.+++|+||+|||++|+++|.+||++|+.||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMIT-RNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTT-SCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCC-CCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 689999999999999999998899999999996 9999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHhhhhhhhc
Q 021220 94 ARLPGRTDNEIKNYWNTHIKRKLYS 118 (316)
Q Consensus 94 ~~lpgRT~~qcknRW~~~lk~k~~~ 118 (316)
+.|||||+++|++||+.++++..+.
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999887654
No 4
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.97 E-value=2e-32 Score=229.32 Aligned_cols=108 Identities=47% Similarity=0.855 Sum_probs=102.3
Q ss_pred cCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCCCCCCCHHHHHHHHHHHHhhCC
Q 021220 8 EKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLLGN 87 (316)
Q Consensus 8 ~K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EEDe~Llelv~~~Gn 87 (316)
.++.+++|+||+|||++|+++|.+||.++|..||..|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||+
T Consensus 21 l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~ 99 (128)
T 1h8a_C 21 LNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 99 (128)
T ss_dssp -CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSS-CCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred hCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcC-CcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 467889999999999999999999998889999999997 9999999999999999999999999999999999999999
Q ss_pred chhHHhhcCCCCCHHHHHHHHHHhhhhhh
Q 021220 88 KWSLIAARLPGRTDNEIKNYWNTHIKRKL 116 (316)
Q Consensus 88 kWs~IA~~lpgRT~~qcknRW~~~lk~k~ 116 (316)
+|+.||+.|||||+++|++||+.++++++
T Consensus 100 ~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 100 RWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp CHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999998763
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=2.6e-32 Score=228.60 Aligned_cols=106 Identities=36% Similarity=0.632 Sum_probs=101.1
Q ss_pred cCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCCCCCCCHHHHHHHHHHHHhhCC
Q 021220 8 EKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLLGN 87 (316)
Q Consensus 8 ~K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EEDe~Llelv~~~Gn 87 (316)
.++..++|+||+|||++|+.+|.+||. +|..||+.|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPN-RNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTT-CCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 467889999999999999999999997 89999999986 9999999999999999999999999999999999999999
Q ss_pred chhHHhhcCCCCCHHHHHHHHHHhhhhh
Q 021220 88 KWSLIAARLPGRTDNEIKNYWNTHIKRK 115 (316)
Q Consensus 88 kWs~IA~~lpgRT~~qcknRW~~~lk~k 115 (316)
+|+.||+.|+|||+++|++||+.++++.
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988764
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=3.4e-32 Score=235.48 Aligned_cols=142 Identities=27% Similarity=0.518 Sum_probs=87.8
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCCCCCCCHHHHHHHHHHHHhhCC-ch
Q 021220 11 HTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLLGN-KW 89 (316)
Q Consensus 11 ~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EEDe~Llelv~~~Gn-kW 89 (316)
++++++||+|||++|+++|.+||.++|..||..|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 468999999999999999999998899999999986 9999999999999999999999999999999999999995 79
Q ss_pred hHHhhcCCCCCHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021220 90 SLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNSAPVPAPSPGNNNNNNSNKRNNN 153 (316)
Q Consensus 90 s~IA~~lpgRT~~qcknRW~~~lk~k~~~~~~s~~e~~~l~~~~~~~p~~~s~~~~~~~~~~~~ 153 (316)
..||..|+|||+.||++||+++|.+.+.++.|+++|+..|..+...-+..++..+...++++++
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~ 145 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDN 145 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHH
Confidence 9999999999999999999999999999999999999988766543344444444444445443
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=4.4e-30 Score=222.24 Aligned_cols=108 Identities=47% Similarity=0.839 Sum_probs=102.5
Q ss_pred cCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCCCCCCCHHHHHHHHHHHHhhCC
Q 021220 8 EKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLLGN 87 (316)
Q Consensus 8 ~K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EEDe~Llelv~~~Gn 87 (316)
..+.+++|+||+|||++|+.+|..||..+|..||..|++ |++.||+.||.++|+|.+++++||+|||++|++++.+||+
T Consensus 52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~ 130 (159)
T 1h89_C 52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 130 (159)
T ss_dssp TCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTT-CCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred cCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCC-CCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence 357889999999999999999999998789999999986 9999999999999999999999999999999999999999
Q ss_pred chhHHhhcCCCCCHHHHHHHHHHhhhhhh
Q 021220 88 KWSLIAARLPGRTDNEIKNYWNTHIKRKL 116 (316)
Q Consensus 88 kWs~IA~~lpgRT~~qcknRW~~~lk~k~ 116 (316)
+|+.||+.|||||+++|++||+.++++++
T Consensus 131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 131 RWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999998764
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.87 E-value=2.3e-23 Score=174.29 Aligned_cols=112 Identities=23% Similarity=0.426 Sum_probs=76.7
Q ss_pred cccccCcccccccccceeeeccCCCCCCCCCCHHHHHHHHHHHHhhCC-chhHHhhcCCCCCHHHHHHHHHHhhhhhhhc
Q 021220 40 LPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLLGN-KWSLIAARLPGRTDNEIKNYWNTHIKRKLYS 118 (316)
Q Consensus 40 IAk~l~~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EEDe~Llelv~~~Gn-kWs~IA~~lpgRT~~qcknRW~~~lk~k~~~ 118 (316)
||+.|++ |+++||++||.++|+|.+++|+||+|||++|+++|.+||. +|..||..|+|||+.||++||+++|.+.+.+
T Consensus 1 Ia~~~~~-Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIKN-RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccCC-CCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 7888986 9999999999999999999999999999999999999995 6999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021220 119 RGIDPQTHRPLNSAPVPAPSPGNNNNNNSNKRNN 152 (316)
Q Consensus 119 ~~~s~~e~~~l~~~~~~~p~~~s~~~~~~~~~~~ 152 (316)
+.|+++|+..|..+...-+..++..+...+++++
T Consensus 80 ~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~ 113 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTD 113 (128)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCH
T ss_pred ccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCH
Confidence 9999999998876644333344444433344443
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.7e-21 Score=145.53 Aligned_cols=67 Identities=22% Similarity=0.549 Sum_probs=63.9
Q ss_pred cCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCCCCCCCHHHH
Q 021220 8 EKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEED 75 (316)
Q Consensus 8 ~K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EED 75 (316)
..+.+++|+||+|||++|+++|.+||.++|..||..|++ |+++||++||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHR-KSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTT-CCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcC-CCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 357889999999999999999999998899999999996 9999999999999999999999999997
No 10
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.3e-18 Score=130.11 Aligned_cols=65 Identities=22% Similarity=0.338 Sum_probs=62.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhC-CchhHHhhcCCCCCHHHHHHHHHHhhhhhhhcCCCCCCCC
Q 021220 62 RPDLKRGNFTEEEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTH 126 (316)
Q Consensus 62 ~p~lkrg~WT~EEDe~Llelv~~~G-nkWs~IA~~lpgRT~~qcknRW~~~lk~k~~~~~~s~~e~ 126 (316)
.+.+++++||+|||++|+++|.+|| ++|..||..|+|||+.||++||+++|++.++++.|+++||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4678999999999999999999999 8999999999999999999999999999999999999997
No 11
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.73 E-value=2.8e-18 Score=131.67 Aligned_cols=58 Identities=24% Similarity=0.346 Sum_probs=47.3
Q ss_pred cceeeeccCCCCCCCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhh
Q 021220 54 RLRWINYLRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHI 112 (316)
Q Consensus 54 r~Rw~n~L~p~lkrg~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~l 112 (316)
--||.++|+|++++++||+|||++|+++|.+||++|+.||+.| |||+++||+||+.+.
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999999 999999999998643
No 12
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.71 E-value=1.6e-17 Score=126.37 Aligned_cols=66 Identities=26% Similarity=0.327 Sum_probs=60.5
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhhhhhhcCCCCCCCCC
Q 021220 61 LRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHR 127 (316)
Q Consensus 61 L~p~lkrg~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk~k~~~~~~s~~e~~ 127 (316)
.+|.+++++||+|||++|+++|.+||++|..||.+|+|||++|||+||+.++++.++. ++++++..
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~s 68 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETPN 68 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCSC
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCccc
Confidence 5788999999999999999999999999999999999999999999999999998877 77666543
No 13
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.70 E-value=1.3e-17 Score=153.08 Aligned_cols=124 Identities=19% Similarity=0.298 Sum_probs=96.0
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCC-----ccccccccCcccccccccceeeeccCCCCC-----------------
Q 021220 9 KEHTNKGAWTKEEDERLINYIKVHGEGC-----WRSLPKAAGLLRCGKSCRLRWINYLRPDLK----------------- 66 (316)
Q Consensus 9 K~~~kKg~WT~EEDe~L~~lV~kyG~~n-----W~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lk----------------- 66 (316)
...+++++||+|||++|+++|++||... |..||+.|++ ||+.|||.||..+|.+.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpG-RT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTT-SCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCC-CCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 3567899999999999999999998642 9999999997 9999999999999999986
Q ss_pred ------------CCCCCHHHHHHHHHHHHh-h--------------------------------CC--------------
Q 021220 67 ------------RGNFTEEEDELIINFHSL-L--------------------------------GN-------------- 87 (316)
Q Consensus 67 ------------rg~WT~EEDe~Llelv~~-~--------------------------------Gn-------------- 87 (316)
+..||.|||-.|+..+.+ + |.
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 799999999999999876 1 11
Q ss_pred -----------chhHHhhcCCCCCHHHHHHHHHHhhhhh-----------hhcCCCCCCCCCCCCCCC
Q 021220 88 -----------KWSLIAARLPGRTDNEIKNYWNTHIKRK-----------LYSRGIDPQTHRPLNSAP 133 (316)
Q Consensus 88 -----------kWs~IA~~lpgRT~~qcknRW~~~lk~k-----------~~~~~~s~~e~~~l~~~~ 133 (316)
.|.+||+.+|+||++++|+||+..|+.. ....+-.|+....+..-+
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~gi~~yi~yye~~~~~~~~p~~~kn~t~~~ 229 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAYGIDDYISYYEAEKAQNREPEPMKNLTNRP 229 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHHCHHHHHHHHHTC-------CCCCSCC---
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCcccccccccc
Confidence 6999999999999999999999988753 223445566666555443
No 14
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2.5e-17 Score=123.03 Aligned_cols=60 Identities=18% Similarity=0.351 Sum_probs=57.4
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhhhhhhcCC
Q 021220 60 YLRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120 (316)
Q Consensus 60 ~L~p~lkrg~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk~k~~~~~ 120 (316)
+|+|.+++++||+|||++|+++|++||++|..||. |+|||+.|||+||+.+|++.+.+..
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 79999999999999999999999999999999999 8899999999999999999988764
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=8.4e-17 Score=117.96 Aligned_cols=56 Identities=23% Similarity=0.449 Sum_probs=52.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhC-CchhHHhhcCCCCCHHHHHHHHHHhhhhhhh
Q 021220 62 RPDLKRGNFTEEEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYWNTHIKRKLY 117 (316)
Q Consensus 62 ~p~lkrg~WT~EEDe~Llelv~~~G-nkWs~IA~~lpgRT~~qcknRW~~~lk~k~~ 117 (316)
+|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.||++||+++|++.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 5788999999999999999999999 6999999999999999999999999988654
No 16
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.66 E-value=1.3e-17 Score=139.27 Aligned_cols=83 Identities=17% Similarity=0.331 Sum_probs=77.3
Q ss_pred cCCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccc----CcccccccccceeeeccC-----CCCCCC-CCCHHHHHH
Q 021220 8 EKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAA----GLLRCGKSCRLRWINYLR-----PDLKRG-NFTEEEDEL 77 (316)
Q Consensus 8 ~K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l----~~~Rt~kQCr~Rw~n~L~-----p~lkrg-~WT~EEDe~ 77 (316)
.++..++++||+|||+.|+++|.+||.++|..|++.+ ++ |+..+|++||.++++ |.+++| +|++||+.+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~-RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSS-CCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCC-CCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 3567889999999999999999999998999999985 54 999999999999998 999999 999999999
Q ss_pred HHHHHHhhCCchhH
Q 021220 78 IINFHSLLGNKWSL 91 (316)
Q Consensus 78 Llelv~~~GnkWs~ 91 (316)
|++++..+||+|++
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 99999999999986
No 17
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.63 E-value=2.9e-16 Score=111.84 Aligned_cols=50 Identities=32% Similarity=0.592 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC-chhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220 65 LKRGNFTEEEDELIINFHSLLGN-KWSLIAARLPGRTDNEIKNYWNTHIKR 114 (316)
Q Consensus 65 lkrg~WT~EEDe~Llelv~~~Gn-kWs~IA~~lpgRT~~qcknRW~~~lk~ 114 (316)
+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||+++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999997 999999999999999999999999875
No 18
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.63 E-value=5e-16 Score=117.03 Aligned_cols=61 Identities=30% Similarity=0.313 Sum_probs=56.4
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHhhC-CchhHHhhcCC--CCCHHHHHHHHHHhhhhhhhcCCC
Q 021220 61 LRPDLKRGNFTEEEDELIINFHSLLG-NKWSLIAARLP--GRTDNEIKNYWNTHIKRKLYSRGI 121 (316)
Q Consensus 61 L~p~lkrg~WT~EEDe~Llelv~~~G-nkWs~IA~~lp--gRT~~qcknRW~~~lk~k~~~~~~ 121 (316)
..+..++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||+++|++.+.+...
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~ 67 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDS 67 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence 45677899999999999999999999 79999999999 999999999999999999887654
No 19
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.62 E-value=4.7e-16 Score=110.87 Aligned_cols=50 Identities=34% Similarity=0.733 Sum_probs=47.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC-chhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220 65 LKRGNFTEEEDELIINFHSLLGN-KWSLIAARLPGRTDNEIKNYWNTHIKR 114 (316)
Q Consensus 65 lkrg~WT~EEDe~Llelv~~~Gn-kWs~IA~~lpgRT~~qcknRW~~~lk~ 114 (316)
+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||+++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999996 699999999999999999999999875
No 20
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.62 E-value=1.2e-16 Score=133.71 Aligned_cols=79 Identities=19% Similarity=0.314 Sum_probs=72.7
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccc----Ccccccccccceeeecc-----CCCCCCCCCCHHH-HHHH
Q 021220 9 KEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAA----GLLRCGKSCRLRWINYL-----RPDLKRGNFTEEE-DELI 78 (316)
Q Consensus 9 K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l----~~~Rt~kQCr~Rw~n~L-----~p~lkrg~WT~EE-De~L 78 (316)
+...++++||+|||+.|+++|.+||.++|..|++.+ .+ |+..+|++||.+++ +|.++++.|+++| +++|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~-RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHH-RTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCC-CCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCC-CCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 456779999999999999999999998999999864 44 99999999999999 8999999999999 8999
Q ss_pred HHHHHhhCCc
Q 021220 79 INFHSLLGNK 88 (316)
Q Consensus 79 lelv~~~Gnk 88 (316)
++++..||++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999974
No 21
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=1.3e-16 Score=117.03 Aligned_cols=57 Identities=28% Similarity=0.554 Sum_probs=53.8
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCC
Q 021220 9 KEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLK 66 (316)
Q Consensus 9 K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lk 66 (316)
.+.+++++||+|||++|+++|.+||.++|..||+.|++ |++.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPN-RTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSS-SCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccC-CCHHHHHHHHHHHcCCccC
Confidence 46889999999999999999999998789999999997 9999999999999999876
No 22
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.60 E-value=1.7e-16 Score=113.20 Aligned_cols=52 Identities=46% Similarity=0.822 Sum_probs=49.3
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCC
Q 021220 12 TNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPD 64 (316)
Q Consensus 12 ~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~ 64 (316)
+++|+||+|||++|+++|.+||.++|..||+.|++ |+++||+.||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 57899999999999999999998889999999986 99999999999999984
No 23
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.60 E-value=1.2e-15 Score=109.26 Aligned_cols=50 Identities=32% Similarity=0.390 Sum_probs=46.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhC-CchhHHhhcCC--CCCHHHHHHHHHHhhhhh
Q 021220 66 KRGNFTEEEDELIINFHSLLG-NKWSLIAARLP--GRTDNEIKNYWNTHIKRK 115 (316)
Q Consensus 66 krg~WT~EEDe~Llelv~~~G-nkWs~IA~~lp--gRT~~qcknRW~~~lk~k 115 (316)
++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||+++++.+
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k 53 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence 579999999999999999999 79999999999 999999999999998753
No 24
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.58 E-value=7.7e-16 Score=128.51 Aligned_cols=94 Identities=18% Similarity=0.232 Sum_probs=78.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCC
Q 021220 62 RPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNSAPVPAPSPGN 141 (316)
Q Consensus 62 ~p~lkrg~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk~k~~~~~~s~~e~~~l~~~~~~~p~~~s 141 (316)
.+..++|+||+|||++|+++|.+||.+|..||..|+|||..||+.||+++|.+.+.++.|+++||..|..+...-+..++
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~ 85 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWA 85 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999998876544444455
Q ss_pred CCCCCCCCCCCCCC
Q 021220 142 NNNNNSNKRNNNTS 155 (316)
Q Consensus 142 ~~~~~~~~~~~~~~ 155 (316)
..+...++++.++.
T Consensus 86 ~Ia~~l~gRt~~~~ 99 (126)
T 3osg_A 86 IIAKFFPGRTDIHI 99 (126)
T ss_dssp HHHTTSTTCCHHHH
T ss_pred HHHHHcCCCCHHHH
Confidence 55544555554433
No 25
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.58 E-value=6.8e-16 Score=124.41 Aligned_cols=88 Identities=23% Similarity=0.402 Sum_probs=73.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCC-chhHHhhcCCCCCHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCC
Q 021220 64 DLKRGNFTEEEDELIINFHSLLGN-KWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNSAPVPAPSPGNN 142 (316)
Q Consensus 64 ~lkrg~WT~EEDe~Llelv~~~Gn-kWs~IA~~lpgRT~~qcknRW~~~lk~k~~~~~~s~~e~~~l~~~~~~~p~~~s~ 142 (316)
++++|+||+|||++|+++|.+||. +|..||..|+|||+.||++||.++|.+.+.++.|+++|+..|..+...-+..++.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~ 80 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE 80 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence 468999999999999999999996 7999999999999999999999999999999999999999887764433333444
Q ss_pred CCCCCCCCC
Q 021220 143 NNNNSNKRN 151 (316)
Q Consensus 143 ~~~~~~~~~ 151 (316)
.+...++++
T Consensus 81 Ia~~l~gRt 89 (105)
T 1gv2_A 81 IAKLLPGRT 89 (105)
T ss_dssp HHTTCTTCC
T ss_pred HHHHcCCCC
Confidence 443344444
No 26
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=1.8e-15 Score=111.15 Aligned_cols=53 Identities=13% Similarity=0.209 Sum_probs=49.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhC-CchhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220 62 RPDLKRGNFTEEEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYWNTHIKR 114 (316)
Q Consensus 62 ~p~lkrg~WT~EEDe~Llelv~~~G-nkWs~IA~~lpgRT~~qcknRW~~~lk~ 114 (316)
.+.+.+++||+|||++|+++|.+|| ++|..||..|+|||+.||++||+++|..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 3578899999999999999999999 8999999999999999999999998864
No 27
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.57 E-value=2.7e-16 Score=111.98 Aligned_cols=52 Identities=31% Similarity=0.675 Sum_probs=48.0
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCC
Q 021220 12 TNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPD 64 (316)
Q Consensus 12 ~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~ 64 (316)
+++|+||+|||++|+++|.+||.++|..||+.|++ |++.||+.||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTT-CCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 47899999999999999999998789999999997 99999999999999985
No 28
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.57 E-value=3.8e-16 Score=117.68 Aligned_cols=63 Identities=22% Similarity=0.347 Sum_probs=58.3
Q ss_pred cCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccC--cccccccccceeeeccCCCCCCCCCC
Q 021220 8 EKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAG--LLRCGKSCRLRWINYLRPDLKRGNFT 71 (316)
Q Consensus 8 ~K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~--~~Rt~kQCr~Rw~n~L~p~lkrg~WT 71 (316)
.++..++++||+|||++|+.+|.+||.++|..||..|+ + |++.||++||.++|+|.+.++..+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSS-CCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCC-CCHHHHHHHHHHHcCCCCCCCCCC
Confidence 35678899999999999999999999889999999998 6 999999999999999999988764
No 29
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=3.8e-15 Score=113.70 Aligned_cols=59 Identities=15% Similarity=0.128 Sum_probs=54.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhC------CchhHHhhcCCCCCHHHHHHHHHHhhhhhhhcCC
Q 021220 62 RPDLKRGNFTEEEDELIINFHSLLG------NKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRG 120 (316)
Q Consensus 62 ~p~lkrg~WT~EEDe~Llelv~~~G------nkWs~IA~~lpgRT~~qcknRW~~~lk~k~~~~~ 120 (316)
+|.+.+++||+|||++|+++|.+|| ++|..||.+|+|||+.||++||+++|.+.++.+.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 5788999999999999999999999 7899999999999999999999999988776543
No 30
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.56 E-value=4.2e-15 Score=111.05 Aligned_cols=52 Identities=29% Similarity=0.461 Sum_probs=47.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhC-CchhHHhhcCC--CCCHHHHHHHHHHhhhhhh
Q 021220 65 LKRGNFTEEEDELIINFHSLLG-NKWSLIAARLP--GRTDNEIKNYWNTHIKRKL 116 (316)
Q Consensus 65 lkrg~WT~EEDe~Llelv~~~G-nkWs~IA~~lp--gRT~~qcknRW~~~lk~k~ 116 (316)
.++++||+|||++|+++|.+|| ++|..||+.++ |||+.||++||++++++.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4789999999999999999999 69999999865 9999999999999998765
No 31
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.53 E-value=2.9e-15 Score=121.55 Aligned_cols=69 Identities=23% Similarity=0.353 Sum_probs=64.2
Q ss_pred CCCCCHHHHHHHHHHHHhhCC-chhHHhhcCCCCCHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCC
Q 021220 67 RGNFTEEEDELIINFHSLLGN-KWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNSAPVP 135 (316)
Q Consensus 67 rg~WT~EEDe~Llelv~~~Gn-kWs~IA~~lpgRT~~qcknRW~~~lk~k~~~~~~s~~e~~~l~~~~~~ 135 (316)
+|.||+|||++|+++|.+||. +|..||..|+|||+.||+.||.++|.+.+.++.|+++||..|..+...
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~ 70 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAE 70 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHH
Confidence 589999999999999999995 899999999999999999999999999999999999999988765443
No 32
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.51 E-value=1.6e-14 Score=105.56 Aligned_cols=50 Identities=24% Similarity=0.368 Sum_probs=46.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhC-CchhHHhhcCC-CCCHHHHHHHHHHhh
Q 021220 63 PDLKRGNFTEEEDELIINFHSLLG-NKWSLIAARLP-GRTDNEIKNYWNTHI 112 (316)
Q Consensus 63 p~lkrg~WT~EEDe~Llelv~~~G-nkWs~IA~~lp-gRT~~qcknRW~~~l 112 (316)
..+.+++||+|||++|+++|.+|| ++|..||++|+ |||+.||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 346689999999999999999999 89999999999 999999999998865
No 33
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.51 E-value=5.1e-15 Score=124.16 Aligned_cols=90 Identities=22% Similarity=0.378 Sum_probs=77.9
Q ss_pred CCCCCHHHHHHHHHHHHhhC-CchhHHhhcCCCCCHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021220 67 RGNFTEEEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNSAPVPAPSPGNNNNN 145 (316)
Q Consensus 67 rg~WT~EEDe~Llelv~~~G-nkWs~IA~~lpgRT~~qcknRW~~~lk~k~~~~~~s~~e~~~l~~~~~~~p~~~s~~~~ 145 (316)
+|+||+|||++|+++|.+|| ++|..||..|+|||..||+.||.++|.+.+.++.|+++||..|..+...-+..++..+.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~ 81 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK 81 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 78999999999999999999 78999999999999999999999999999999999999999988766555556666666
Q ss_pred CCCCCCCCCCC
Q 021220 146 NSNKRNNNTST 156 (316)
Q Consensus 146 ~~~~~~~~~~~ 156 (316)
..++++.++..
T Consensus 82 ~l~gRt~~~~k 92 (131)
T 3zqc_A 82 LIPGRTDNAIK 92 (131)
T ss_dssp TSTTCCHHHHH
T ss_pred HcCCCCHHHHH
Confidence 66666654443
No 34
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.50 E-value=2.3e-15 Score=112.47 Aligned_cols=56 Identities=29% Similarity=0.445 Sum_probs=48.9
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccC-cccccccccceeeeccCCCCC
Q 021220 11 HTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAG-LLRCGKSCRLRWINYLRPDLK 66 (316)
Q Consensus 11 ~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~-~~Rt~kQCr~Rw~n~L~p~lk 66 (316)
..+|++||+|||++|+++|.+||.++|..||+.++ .+|++.||++||.+++++.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 45789999999999999999999989999999865 239999999999999988653
No 35
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.23 E-value=2.2e-15 Score=119.29 Aligned_cols=58 Identities=28% Similarity=0.238 Sum_probs=53.9
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhhhhhh
Q 021220 60 YLRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLY 117 (316)
Q Consensus 60 ~L~p~lkrg~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk~k~~ 117 (316)
.+.|.+++++||+|||++|+++|.+||++|..||..|+|||++||++||++++++.-.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l 66 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNL 66 (89)
Confidence 5678899999999999999999999999999999999999999999999999887533
No 36
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.49 E-value=4.5e-15 Score=109.06 Aligned_cols=54 Identities=17% Similarity=0.468 Sum_probs=50.9
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCC
Q 021220 10 EHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPD 64 (316)
Q Consensus 10 ~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~ 64 (316)
+.+.+++||+|||++|+++|.+||.++|..||+.|++ |+++||+.||.++|.+.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCT-KTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTT-SCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCC-CCHHHHHHHHHHHccCC
Confidence 5788999999999999999999998899999999997 99999999999998764
No 37
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.45 E-value=8.4e-15 Score=104.89 Aligned_cols=49 Identities=27% Similarity=0.441 Sum_probs=46.2
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCccccccccC--cccccccccceeeeccC
Q 021220 13 NKGAWTKEEDERLINYIKVHGEGCWRSLPKAAG--LLRCGKSCRLRWINYLR 62 (316)
Q Consensus 13 kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~--~~Rt~kQCr~Rw~n~L~ 62 (316)
++|+||+|||++|+.+|.+||.++|..||..|+ + |++.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCC-CCHHHHHHHHHHHHc
Confidence 579999999999999999999889999999998 6 999999999999875
No 38
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=9.5e-15 Score=111.49 Aligned_cols=62 Identities=19% Similarity=0.267 Sum_probs=56.5
Q ss_pred cCCCCCcCCCCHHHHHHHHHHHHHhCC-----CCccccccccCcccccccccceeeeccCCCCCCCCC
Q 021220 8 EKEHTNKGAWTKEEDERLINYIKVHGE-----GCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNF 70 (316)
Q Consensus 8 ~K~~~kKg~WT~EEDe~L~~lV~kyG~-----~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkrg~W 70 (316)
.++.+++++||+|||++|+++|.+||. .+|..||+.|++ |+..||+.||++||.+.++.|..
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~-Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGN-RTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSS-SCHHHHHHHHHHHHGGGSTTCSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhcCCC
Confidence 468999999999999999999999996 679999999997 99999999999999988776643
No 39
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.41 E-value=3e-14 Score=104.09 Aligned_cols=51 Identities=22% Similarity=0.443 Sum_probs=46.8
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeecc
Q 021220 11 HTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 (316)
Q Consensus 11 ~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L 61 (316)
.+.+++||+|||++|+++|.+||.++|..||+.|+++|+++||+.||.+++
T Consensus 6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456899999999999999999998899999999993499999999999875
No 40
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.1e-14 Score=108.75 Aligned_cols=58 Identities=22% Similarity=0.422 Sum_probs=52.3
Q ss_pred cCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCCCC
Q 021220 8 EKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRG 68 (316)
Q Consensus 8 ~K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkrg 68 (316)
..|.+++++||+|||++|+.+|..||. +|..||+ +++ |+++||+.||.++|+|.++++
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIG-RTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHS-SCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccC-cCHHHHHHHHHHHhChHhcCC
Confidence 468899999999999999999999996 7999999 665 999999999999998876654
No 41
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.38 E-value=4.6e-13 Score=102.55 Aligned_cols=51 Identities=12% Similarity=0.236 Sum_probs=47.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhC----CchhHHhhcCCCCCHHHHHHHHHHhhh
Q 021220 63 PDLKRGNFTEEEDELIINFHSLLG----NKWSLIAARLPGRTDNEIKNYWNTHIK 113 (316)
Q Consensus 63 p~lkrg~WT~EEDe~Llelv~~~G----nkWs~IA~~lpgRT~~qcknRW~~~lk 113 (316)
+...+++||.|||++|++++.+|| ++|.+||..|||||..||++||+.+++
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999999 789999999999999999999998764
No 42
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.36 E-value=5.2e-14 Score=106.86 Aligned_cols=58 Identities=21% Similarity=0.280 Sum_probs=53.3
Q ss_pred cCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCCC
Q 021220 8 EKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKR 67 (316)
Q Consensus 8 ~K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkr 67 (316)
..+.+++++||+|||++|+++|..||. +|..||+.|++ |+..||+.||.+||.+.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~-Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGS-RTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSS-SCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhc
Confidence 467899999999999999999999996 79999999997 99999999999998876655
No 43
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.35 E-value=5.5e-13 Score=103.49 Aligned_cols=48 Identities=17% Similarity=0.291 Sum_probs=45.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHh
Q 021220 64 DLKRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTH 111 (316)
Q Consensus 64 ~lkrg~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~ 111 (316)
...+++||+|||++|+++|.+||++|..||.+|++||+.||++||.++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456899999999999999999999999999999999999999999775
No 44
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.35 E-value=7.1e-13 Score=121.67 Aligned_cols=70 Identities=20% Similarity=0.328 Sum_probs=61.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCc------hhHHhhcCCCCCHHHHHHHHHHhhhhhhhcCCCCCCCCCCCCCCCC
Q 021220 64 DLKRGNFTEEEDELIINFHSLLGNK------WSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNSAPV 134 (316)
Q Consensus 64 ~lkrg~WT~EEDe~Llelv~~~Gnk------Ws~IA~~lpgRT~~qcknRW~~~lk~k~~~~~~s~~e~~~l~~~~~ 134 (316)
.+++++||+|||++|+++|.+||++ |..||+.|+|||+++||+||+.+|++.+... |...++..|.....
T Consensus 5 ~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y~~ded~~Li~d~~ 80 (246)
T 1ign_A 5 SHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-YEVDKFGKLVRDDD 80 (246)
T ss_dssp ---CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-ECBCTTSCBCBCTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-cccCcchhhhhccC
Confidence 5678999999999999999999975 9999999999999999999999999998855 99888888876655
No 45
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.33 E-value=1.7e-12 Score=96.26 Aligned_cols=50 Identities=24% Similarity=0.403 Sum_probs=46.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCchhHHh---hcCCCCCHHHHHHHHHHhhhhh
Q 021220 66 KRGNFTEEEDELIINFHSLLGNKWSLIA---ARLPGRTDNEIKNYWNTHIKRK 115 (316)
Q Consensus 66 krg~WT~EEDe~Llelv~~~GnkWs~IA---~~lpgRT~~qcknRW~~~lk~k 115 (316)
++.+||+|||+.|+++|++||.+|..|+ .+|++||+.++++||++++++.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence 6789999999999999999999999999 5789999999999999988753
No 46
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.32 E-value=5.6e-13 Score=111.24 Aligned_cols=54 Identities=26% Similarity=0.431 Sum_probs=49.7
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHhhCC-chhHHhhc----CCCCCHHHHHHHHHHhhhh
Q 021220 61 LRPDLKRGNFTEEEDELIINFHSLLGN-KWSLIAAR----LPGRTDNEIKNYWNTHIKR 114 (316)
Q Consensus 61 L~p~lkrg~WT~EEDe~Llelv~~~Gn-kWs~IA~~----lpgRT~~qcknRW~~~lk~ 114 (316)
+.+..++++||.|||+.|+++|.+||. +|+.|+.. |+|||+.+||+||+++++.
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 456778999999999999999999996 99999998 4999999999999999984
No 47
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.29 E-value=4.6e-12 Score=103.34 Aligned_cols=54 Identities=22% Similarity=0.344 Sum_probs=48.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCC-chhHHhhcC----CCCCHHHHHHHHHHhhhhhh
Q 021220 63 PDLKRGNFTEEEDELIINFHSLLGN-KWSLIAARL----PGRTDNEIKNYWNTHIKRKL 116 (316)
Q Consensus 63 p~lkrg~WT~EEDe~Llelv~~~Gn-kWs~IA~~l----pgRT~~qcknRW~~~lk~k~ 116 (316)
...++++||.|||+.|+++|.+||. +|+.|+..+ +|||+.+||+||+++++...
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~ 67 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK 67 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 4568899999999999999999996 999999965 89999999999999997543
No 48
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.29 E-value=2.7e-12 Score=107.23 Aligned_cols=63 Identities=27% Similarity=0.395 Sum_probs=52.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCC-chhHHhhc----CCCCCHHHHHHHHHHhhh-----hhhhcCCCCCCC
Q 021220 63 PDLKRGNFTEEEDELIINFHSLLGN-KWSLIAAR----LPGRTDNEIKNYWNTHIK-----RKLYSRGIDPQT 125 (316)
Q Consensus 63 p~lkrg~WT~EEDe~Llelv~~~Gn-kWs~IA~~----lpgRT~~qcknRW~~~lk-----~k~~~~~~s~~e 125 (316)
...++++||.|||+.|+++|++||. +|+.|+.. |+|||+.+||+||+++++ +.++++.+.++|
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e 99 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQE 99 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHH
Confidence 3457899999999999999999996 99999987 489999999999999995 344444444444
No 49
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.29 E-value=3.4e-12 Score=100.01 Aligned_cols=48 Identities=25% Similarity=0.456 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHHHHHhhCC-chhHHhhc----CCCCCHHHHHHHHHHhhhhh
Q 021220 68 GNFTEEEDELIINFHSLLGN-KWSLIAAR----LPGRTDNEIKNYWNTHIKRK 115 (316)
Q Consensus 68 g~WT~EEDe~Llelv~~~Gn-kWs~IA~~----lpgRT~~qcknRW~~~lk~k 115 (316)
.+||.|||+.|+++|++||. +|+.|++. |+|||+.+||+||+++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999996 99999996 89999999999999999754
No 50
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.29 E-value=7.8e-13 Score=107.90 Aligned_cols=80 Identities=20% Similarity=0.321 Sum_probs=66.8
Q ss_pred cCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccC---cccccccccceeeecc-----CCCCCCCCCCHHHHHH-H
Q 021220 8 EKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAG---LLRCGKSCRLRWINYL-----RPDLKRGNFTEEEDEL-I 78 (316)
Q Consensus 8 ~K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~---~~Rt~kQCr~Rw~n~L-----~p~lkrg~WT~EEDe~-L 78 (316)
.+...++++||+|||+.|+++|.+||.++|..|++.++ .+||..+|++||.+++ +|.+++|.-+++|--. +
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 45678899999999999999999999989999998652 2499999999999998 7999999888777544 7
Q ss_pred HHHHHhhCC
Q 021220 79 INFHSLLGN 87 (316)
Q Consensus 79 lelv~~~Gn 87 (316)
++|+..+|+
T Consensus 87 ~~~~~~~~~ 95 (105)
T 2aje_A 87 LNAHGYWTQ 95 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776553
No 51
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.28 E-value=9.9e-13 Score=103.06 Aligned_cols=69 Identities=20% Similarity=0.407 Sum_probs=60.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccc----cCcccccccccceeeecc-----CCCCCCC-CCCHHHHHHHHHHHHh
Q 021220 15 GAWTKEEDERLINYIKVHGEGCWRSLPKA----AGLLRCGKSCRLRWINYL-----RPDLKRG-NFTEEEDELIINFHSL 84 (316)
Q Consensus 15 g~WT~EEDe~L~~lV~kyG~~nW~~IAk~----l~~~Rt~kQCr~Rw~n~L-----~p~lkrg-~WT~EEDe~Llelv~~ 84 (316)
++||+|||+.|+++|.+||.++|..|++. |++ |++.+|++||.+++ +|.+++| +..++...+++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~-RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTT-SCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCC-CCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999899999985 665 99999999999987 6776655 6778888889888764
No 52
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.24 E-value=1.6e-12 Score=99.55 Aligned_cols=57 Identities=23% Similarity=0.331 Sum_probs=47.6
Q ss_pred ccCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCCC
Q 021220 7 CEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKR 67 (316)
Q Consensus 7 ~~K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkr 67 (316)
-..|.+++|+||+|||++|+++|.+||.. |..||+.| + |++.||+.||.. |......
T Consensus 16 ~ldP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l-g-Rt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 16 FQGDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL-G-RSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp ---CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH-T-SCHHHHHHHHHH-CSCCCSC
T ss_pred ecCCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh-C-CCHHHHHHHHHH-HHHHccC
Confidence 45689999999999999999999999965 99999999 5 999999999985 5444443
No 53
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.22 E-value=2e-12 Score=100.26 Aligned_cols=52 Identities=19% Similarity=0.431 Sum_probs=48.2
Q ss_pred ccCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeec
Q 021220 7 CEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60 (316)
Q Consensus 7 ~~K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~ 60 (316)
+.+....+++||+|||++|+++|.+|| ++|..||++|++ |+..||+.||.++
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~-RT~~qcr~r~~~~ 62 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGS-RTQDECILHFLRL 62 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSS-CCHHHHHHHHTTS
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHh
Confidence 356667789999999999999999999 889999999997 9999999999998
No 54
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.17 E-value=2.8e-11 Score=96.66 Aligned_cols=50 Identities=16% Similarity=0.377 Sum_probs=45.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhC----CchhHHhhcCCCCCHHHHHHHHHHhhhhh
Q 021220 66 KRGNFTEEEDELIINFHSLLG----NKWSLIAARLPGRTDNEIKNYWNTHIKRK 115 (316)
Q Consensus 66 krg~WT~EEDe~Llelv~~~G----nkWs~IA~~lpgRT~~qcknRW~~~lk~k 115 (316)
.+++||.|||++|++++.+|| ++|.+||..|||||.++|++||+.+++..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 78999999999999999999999988664
No 55
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.77 E-value=3.4e-12 Score=100.91 Aligned_cols=55 Identities=22% Similarity=0.445 Sum_probs=50.2
Q ss_pred ccCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCC
Q 021220 7 CEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRP 63 (316)
Q Consensus 7 ~~K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p 63 (316)
..-+.+++|+||+|||++|+.+|..||. +|..||..|++ |+..||+.||.++|..
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~g-Rt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGS-KTVSQCKNFYFNYKKR 63 (89)
Confidence 3457889999999999999999999996 69999999997 9999999999998763
No 56
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.13 E-value=6.5e-12 Score=96.18 Aligned_cols=56 Identities=14% Similarity=0.388 Sum_probs=50.4
Q ss_pred cccCCCCCcCCCCHHHHHHHHHHHHHhCC---CCccccccccCcccccccccceeeeccC
Q 021220 6 CCEKEHTNKGAWTKEEDERLINYIKVHGE---GCWRSLPKAAGLLRCGKSCRLRWINYLR 62 (316)
Q Consensus 6 ~~~K~~~kKg~WT~EEDe~L~~lV~kyG~---~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~ 62 (316)
--+++...+++||++||++|+.+|..||. ..|..||+.|++ |+..||+.||.+++.
T Consensus 10 ~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpG-RT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 10 RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKLLVS 68 (73)
T ss_dssp CCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSS-SCHHHHHHHHHHHHS
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 35678889999999999999999999993 469999999997 999999999998765
No 57
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=5.9e-10 Score=82.03 Aligned_cols=48 Identities=19% Similarity=0.202 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhh
Q 021220 66 KRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIK 113 (316)
Q Consensus 66 krg~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk 113 (316)
..++||+||++++++++.+||.+|..||..|++||..+|..+|+...+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999999999999999999999999977544
No 58
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.98 E-value=3.8e-10 Score=90.10 Aligned_cols=67 Identities=13% Similarity=0.235 Sum_probs=59.8
Q ss_pred cccccceeeeccCCCCCCCCCCHHHHHHHHHHHHhhCCchhHHhhcC-----CCCCHHHHHHHHHHhhhhhhhcCC
Q 021220 50 GKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLLGNKWSLIAARL-----PGRTDNEIKNYWNTHIKRKLYSRG 120 (316)
Q Consensus 50 ~kQCr~Rw~n~L~p~lkrg~WT~EEDe~Llelv~~~GnkWs~IA~~l-----pgRT~~qcknRW~~~lk~k~~~~~ 120 (316)
..=+.++|.++|.+ ++||.||+..|++|+++||.+|..|+..+ ++||..++|+||..+.++.+..++
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34567899999875 89999999999999999999999999998 589999999999999988877664
No 59
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.89 E-value=2.5e-09 Score=81.57 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=46.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhC----CchhHHhhcCCCCCHHHHHHHHHHhhhhhh
Q 021220 64 DLKRGNFTEEEDELIINFHSLLG----NKWSLIAARLPGRTDNEIKNYWNTHIKRKL 116 (316)
Q Consensus 64 ~lkrg~WT~EEDe~Llelv~~~G----nkWs~IA~~lpgRT~~qcknRW~~~lk~k~ 116 (316)
..+.+.||.|||++|.+++.+|+ ++|.+||..| |||..+|+.||..+.+...
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~~ 60 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVT 60 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhcC
Confidence 34678999999999999999997 6799999998 9999999999998876543
No 60
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.75 E-value=8.2e-10 Score=88.15 Aligned_cols=49 Identities=12% Similarity=0.285 Sum_probs=43.1
Q ss_pred CCcCCCCHHHHHHHHHHHHHhC---CCCccccccccCcccccccccceeeecc
Q 021220 12 TNKGAWTKEEDERLINYIKVHG---EGCWRSLPKAAGLLRCGKSCRLRWINYL 61 (316)
Q Consensus 12 ~kKg~WT~EEDe~L~~lV~kyG---~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L 61 (316)
..++.||+|||++|+.++..|+ ...|..||+.|++ |+..||+.||.+++
T Consensus 6 ~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpG-RT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 6 GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILV 57 (93)
T ss_dssp --CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTT-CCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3478999999999999999997 3569999999997 99999999999864
No 61
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.72 E-value=9.5e-09 Score=93.71 Aligned_cols=49 Identities=18% Similarity=0.307 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220 66 KRGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKR 114 (316)
Q Consensus 66 krg~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk~ 114 (316)
..+.||+||++++++++.+||++|..||+.+++||..||+++|+.+.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999988876
No 62
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.61 E-value=7e-09 Score=76.88 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=43.7
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccc---cccCcccccccccceeeeccC
Q 021220 12 TNKGAWTKEEDERLINYIKVHGEGCWRSLP---KAAGLLRCGKSCRLRWINYLR 62 (316)
Q Consensus 12 ~kKg~WT~EEDe~L~~lV~kyG~~nW~~IA---k~l~~~Rt~kQCr~Rw~n~L~ 62 (316)
.++.+||+|||+.|+++|++||. +|..|+ .++.+ |+.-.+++||.++..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~-RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKG-RRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTT-CCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccC-cccchHHHHHHHHHh
Confidence 47899999999999999999996 899999 56655 999999999998764
No 63
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=1.4e-08 Score=74.68 Aligned_cols=54 Identities=13% Similarity=0.145 Sum_probs=48.1
Q ss_pred cccCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeecc
Q 021220 6 CCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 (316)
Q Consensus 6 ~~~K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L 61 (316)
-+++.....++||+||++++.+++.+|| .+|..||..|++ |+..||..+|....
T Consensus 4 ~~~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~-rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 4 GSSGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLER-KSVPDCVLYYYLTK 57 (61)
T ss_dssp SCCCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTT-SCHHHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHhc
Confidence 3577778889999999999999999999 689999999997 99999999987543
No 64
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.52 E-value=6.2e-08 Score=96.95 Aligned_cols=47 Identities=19% Similarity=0.338 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220 68 GNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKR 114 (316)
Q Consensus 68 g~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk~ 114 (316)
..||.||-+++++++.+||.+|..||..+..||..|||++|..+.++
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999876554
No 65
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.50 E-value=1.9e-07 Score=71.39 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=43.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhC----CchhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220 66 KRGNFTEEEDELIINFHSLLG----NKWSLIAARLPGRTDNEIKNYWNTHIKR 114 (316)
Q Consensus 66 krg~WT~EEDe~Llelv~~~G----nkWs~IA~~lpgRT~~qcknRW~~~lk~ 114 (316)
....||.+|+++|.+++..|+ ++|..||..++|||..+|+.||..+++.
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 356899999999999999998 4699999999999999999999987543
No 66
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.49 E-value=1.4e-07 Score=69.07 Aligned_cols=47 Identities=23% Similarity=0.470 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHHhh--------CCc-hhHHhh-cCCCCCHHHHHHHHHHhhh
Q 021220 67 RGNFTEEEDELIINFHSLL--------GNK-WSLIAA-RLPGRTDNEIKNYWNTHIK 113 (316)
Q Consensus 67 rg~WT~EEDe~Llelv~~~--------Gnk-Ws~IA~-~lpgRT~~qcknRW~~~lk 113 (316)
+.+||.|||+.|++.|.+| |++ |..|++ .++++|..++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5789999999999999999 544 999999 7999999999999988774
No 67
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.29 E-value=8.6e-08 Score=72.98 Aligned_cols=52 Identities=15% Similarity=0.282 Sum_probs=44.4
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCC---CCccccccccCcccccccccceeeeccCC
Q 021220 10 EHTNKGAWTKEEDERLINYIKVHGE---GCWRSLPKAAGLLRCGKSCRLRWINYLRP 63 (316)
Q Consensus 10 ~~~kKg~WT~EEDe~L~~lV~kyG~---~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p 63 (316)
...+.+.||.|||++|.+++.+|+. ..|..||..++ |+..+|+.||..++..
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHHh
Confidence 3456789999999999999999984 45999999984 9999999999876543
No 68
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=5.5e-06 Score=61.16 Aligned_cols=49 Identities=16% Similarity=0.223 Sum_probs=44.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCchhHHhh-cCCCCCHHHHHHHHHHh
Q 021220 63 PDLKRGNFTEEEDELIINFHSLLGNKWSLIAA-RLPGRTDNEIKNYWNTH 111 (316)
Q Consensus 63 p~lkrg~WT~EEDe~Llelv~~~GnkWs~IA~-~lpgRT~~qcknRW~~~ 111 (316)
|.++...||+||-++..+++.+||.+|..|++ .|++||..+|...|+..
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 56788899999999999999999999999999 59999999999988653
No 69
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.12 E-value=5.8e-07 Score=81.98 Aligned_cols=52 Identities=19% Similarity=0.318 Sum_probs=46.3
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccC
Q 021220 9 KEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLR 62 (316)
Q Consensus 9 K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~ 62 (316)
......++||+||++++++++.+|| ++|..||+.+++ |+..||+.+|.++..
T Consensus 128 ~~~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgT-KT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 128 VIQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGN-KSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSS-CCHHHHHHHHHHTTT
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3344578999999999999999999 689999999997 999999999988764
No 70
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.11 E-value=4.6e-06 Score=66.00 Aligned_cols=50 Identities=20% Similarity=0.313 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHHHhhCC---chhHHhhcCCCCCHHHHHHHHHHhhhhhhhc
Q 021220 69 NFTEEEDELIINFHSLLGN---KWSLIAARLPGRTDNEIKNYWNTHIKRKLYS 118 (316)
Q Consensus 69 ~WT~EEDe~Llelv~~~Gn---kWs~IA~~lpgRT~~qcknRW~~~lk~k~~~ 118 (316)
.||.|||..|+...++-|. .|..||+.|.+|+.+||++||+.+++-.-..
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~ 87 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTA 87 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHC
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999986 7999999999999999999999988755443
No 71
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.08 E-value=4.8e-07 Score=66.27 Aligned_cols=48 Identities=25% Similarity=0.524 Sum_probs=42.0
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCCcccccc-ccCcccccccccceeeeccC
Q 021220 14 KGAWTKEEDERLINYIKVH--------GEGCWRSLPK-AAGLLRCGKSCRLRWINYLR 62 (316)
Q Consensus 14 Kg~WT~EEDe~L~~lV~ky--------G~~nW~~IAk-~l~~~Rt~kQCr~Rw~n~L~ 62 (316)
+.+||+|||+.|+.+|.+| |..-|..+++ .++. ++..+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~-HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQ-HSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSS-CCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCC-CCHHHHHHHHHHHcc
Confidence 4689999999999999999 4345999999 7876 999999999998874
No 72
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.03 E-value=8.6e-07 Score=67.73 Aligned_cols=48 Identities=21% Similarity=0.493 Sum_probs=43.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CCccccccccCcccccccccceeeeccC
Q 021220 14 KGAWTKEEDERLINYIKVHGE---GCWRSLPKAAGLLRCGKSCRLRWINYLR 62 (316)
Q Consensus 14 Kg~WT~EEDe~L~~lV~kyG~---~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~ 62 (316)
...||.+|+++|..++..|+. +.|..||..+|+ |+..+|+.||..++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~g-KT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCC-CCHHHHHHHHHHHHh
Confidence 467999999999999999975 469999999997 999999999998754
No 73
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.22 E-value=9.5e-07 Score=66.40 Aligned_cols=45 Identities=20% Similarity=0.369 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHhhCC---chhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220 69 NFTEEEDELIINFHSLLGN---KWSLIAARLPGRTDNEIKNYWNTHIKR 114 (316)
Q Consensus 69 ~WT~EEDe~Llelv~~~Gn---kWs~IA~~lpgRT~~qcknRW~~~lk~ 114 (316)
-||.|||..|+..+++-|. .|..||..| +|+++||.+||..+++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 6999999999999999996 799999999 99999999999998753
No 74
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.93 E-value=1.6e-05 Score=63.22 Aligned_cols=54 Identities=13% Similarity=0.258 Sum_probs=48.8
Q ss_pred CCCCCHHHHHHHHHHHHhhCCchhHHhhcCC-----CCCHHHHHHHHHHhhhhhhhcCC
Q 021220 67 RGNFTEEEDELIINFHSLLGNKWSLIAARLP-----GRTDNEIKNYWNTHIKRKLYSRG 120 (316)
Q Consensus 67 rg~WT~EEDe~Llelv~~~GnkWs~IA~~lp-----gRT~~qcknRW~~~lk~k~~~~~ 120 (316)
...||.||...|++|+++|+-+|..|+..+. .||-.++|+||+.+.++.+..+.
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 3689999999999999999999999998874 79999999999999988777654
No 75
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.88 E-value=2.9e-06 Score=64.74 Aligned_cols=43 Identities=21% Similarity=0.323 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHHHhhCC----chhHHhhcCCCCCHHHHHHHHH
Q 021220 67 RGNFTEEEDELIINFHSLLGN----KWSLIAARLPGRTDNEIKNYWN 109 (316)
Q Consensus 67 rg~WT~EEDe~Llelv~~~Gn----kWs~IA~~lpgRT~~qcknRW~ 109 (316)
...||.||+++|..++..|+. +|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999984 6999999999999999999884
No 76
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.78 E-value=3.8e-05 Score=72.95 Aligned_cols=99 Identities=25% Similarity=0.287 Sum_probs=78.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccc-------ceeeec---------------------------
Q 021220 15 GAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCR-------LRWINY--------------------------- 60 (316)
Q Consensus 15 g~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr-------~Rw~n~--------------------------- 60 (316)
+.||..+...++.++.+||-.+|..||..|++ ++...++ .||..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~-Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEG-KTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTT-CCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56999999999999999999999999999985 8877765 111000
Q ss_pred ---------------c-CCCCCCCCCCHHHHHHHHHHHHhhC----CchhHHhh------------cCCCCCHHHHHHHH
Q 021220 61 ---------------L-RPDLKRGNFTEEEDELIINFHSLLG----NKWSLIAA------------RLPGRTDNEIKNYW 108 (316)
Q Consensus 61 ---------------L-~p~lkrg~WT~EEDe~Llelv~~~G----nkWs~IA~------------~lpgRT~~qcknRW 108 (316)
+ -+.-+...||+|||..|+-++.+|| +.|..|.. ++..||+.+|..|-
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0 0122446899999999999999999 46999962 35679999999999
Q ss_pred HHhhhh
Q 021220 109 NTHIKR 114 (316)
Q Consensus 109 ~~~lk~ 114 (316)
..+++-
T Consensus 270 ~tLi~~ 275 (304)
T 1ofc_X 270 NTLITL 275 (304)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
No 77
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.65 E-value=7e-05 Score=59.50 Aligned_cols=45 Identities=22% Similarity=0.209 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHh
Q 021220 67 RGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTH 111 (316)
Q Consensus 67 rg~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~ 111 (316)
...||+||.++..+++.+||.+|..||..|++||..+|-..|+..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 368999999999999999999999999999999999999988654
No 78
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.61 E-value=0.00011 Score=55.25 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHhhCCchhHHhh-cCCCCCHHHHHHHHHH
Q 021220 67 RGNFTEEEDELIINFHSLLGNKWSLIAA-RLPGRTDNEIKNYWNT 110 (316)
Q Consensus 67 rg~WT~EEDe~Llelv~~~GnkWs~IA~-~lpgRT~~qcknRW~~ 110 (316)
...||+||-++..+++.+||.+|..|++ .|++||..+|...|+.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4689999999999999999999999999 5999999999999874
No 79
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.49 E-value=1.7e-05 Score=60.51 Aligned_cols=44 Identities=9% Similarity=0.214 Sum_probs=38.7
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC---CccccccccCcccccccccceee
Q 021220 14 KGAWTKEEDERLINYIKVHGEG---CWRSLPKAAGLLRCGKSCRLRWI 58 (316)
Q Consensus 14 Kg~WT~EEDe~L~~lV~kyG~~---nW~~IAk~l~~~Rt~kQCr~Rw~ 58 (316)
.+.||.+|+++|..++..|..+ .|.+||..+|+ |+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpG-KT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKG-RTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCS-SCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCC-CCHHHHHHHHH
Confidence 4679999999999999999754 59999999997 99999999985
No 80
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.39 E-value=6.3e-05 Score=55.43 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=43.5
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccc-ccCcccccccccceeeec
Q 021220 9 KEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPK-AAGLLRCGKSCRLRWINY 60 (316)
Q Consensus 9 K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk-~l~~~Rt~kQCr~Rw~n~ 60 (316)
.|.+....||+||-+++.+.+.+|| .+|..|++ .++. |+..+|...|...
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~-Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPN-KETGELITFYYYW 54 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTT-SCHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCC-CcHHHHHHHHhcc
Confidence 5677788999999999999999999 57999998 6886 9999998776543
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.29 E-value=5.6e-05 Score=75.73 Aligned_cols=49 Identities=18% Similarity=0.335 Sum_probs=43.9
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeecc
Q 021220 11 HTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 (316)
Q Consensus 11 ~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L 61 (316)
.....+||.+|.++++++|.+|| .+|..||+.+++ |+..||+..|.++.
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgT-KT~~Qvk~fy~~~k 425 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGN-KSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSS-CCHHHHHHHHHHTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 34578999999999999999999 689999999997 99999999887653
No 82
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.04 E-value=0.00045 Score=53.28 Aligned_cols=49 Identities=16% Similarity=0.426 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHhhCC----------chhHHhhcCC----CCCHHHHHHHHHHhhhhh
Q 021220 67 RGNFTEEEDELIINFHSLLGN----------KWSLIAARLP----GRTDNEIKNYWNTHIKRK 115 (316)
Q Consensus 67 rg~WT~EEDe~Llelv~~~Gn----------kWs~IA~~lp----gRT~~qcknRW~~~lk~k 115 (316)
...||.+|-..||+++..+.. .|..||..|. .||+.||+++|.++.+.-
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 468999999999999976431 4999998862 699999999999977653
No 83
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.75 E-value=0.003 Score=55.83 Aligned_cols=45 Identities=18% Similarity=0.300 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHhhC-CchhHHhhc--C------------CCCCHHHHHHHHHHhhh
Q 021220 69 NFTEEEDELIINFHSLLG-NKWSLIAAR--L------------PGRTDNEIKNYWNTHIK 113 (316)
Q Consensus 69 ~WT~EEDe~Llelv~~~G-nkWs~IA~~--l------------pgRT~~qcknRW~~~lk 113 (316)
.||.+||..|+..+.+|| ++|..|-.. | ..++...+..|-..+|+
T Consensus 136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence 699999999999999999 899999642 1 12456788888776665
No 84
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.64 E-value=0.00049 Score=54.72 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=41.4
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccccccC----cccccccccceeeecc
Q 021220 12 TNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAG----LLRCGKSCRLRWINYL 61 (316)
Q Consensus 12 ~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~----~~Rt~kQCr~Rw~n~L 61 (316)
+....||.||++.|+.++++|+. .|..|+..+. .+|+.-+++.||..+.
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 44589999999999999999995 5999999983 2399999999987653
No 85
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.62 E-value=0.00052 Score=51.57 Aligned_cols=45 Identities=9% Similarity=0.062 Sum_probs=39.2
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCcccccc-ccCcccccccccceeee
Q 021220 13 NKGAWTKEEDERLINYIKVHGEGCWRSLPK-AAGLLRCGKSCRLRWIN 59 (316)
Q Consensus 13 kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk-~l~~~Rt~kQCr~Rw~n 59 (316)
....||+||-+++...+.+|| .+|..|++ .|++ |+..+|..-|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~-Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLPW-KSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSS-SCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCC-CCHHHHHHHHHh
Confidence 345799999999999999999 57999999 5886 999999877654
No 86
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.52 E-value=0.00062 Score=53.99 Aligned_cols=44 Identities=14% Similarity=0.232 Sum_probs=39.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeee
Q 021220 14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWIN 59 (316)
Q Consensus 14 Kg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n 59 (316)
...||+||.+++.+.+..|| ++|..|+..|+. |+..+|...|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~-Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLER-KTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTT-CCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCC-CCHHHHHHHHhc
Confidence 45799999999999999999 679999999997 999999876643
No 87
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.44 E-value=0.0018 Score=51.28 Aligned_cols=57 Identities=16% Similarity=0.397 Sum_probs=45.1
Q ss_pred CCCCcccCC-CCCcC----CCCHHHHHHHHHHHHHhCC--CCccccccccCcccccccccceeee
Q 021220 2 GRSPCCEKE-HTNKG----AWTKEEDERLINYIKVHGE--GCWRSLPKAAGLLRCGKSCRLRWIN 59 (316)
Q Consensus 2 gr~~~~~K~-~~kKg----~WT~EEDe~L~~lV~kyG~--~nW~~IAk~l~~~Rt~kQCr~Rw~n 59 (316)
|++-|.... ..++| -||.|||..++....+.|. ..|..||+.|++ |++.|+++||+.
T Consensus 16 ~~s~~AkN~~~~s~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~N-ks~nqV~~RFq~ 79 (95)
T 1ug2_A 16 EATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGN-KTPVEVSHRFRE 79 (95)
T ss_dssp CCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSS-CCHHHHHHHHHH
T ss_pred CCceeeccceecCCCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHcc-CCHHHHHHHHHH
Confidence 344555544 33344 4999999999999999875 359999999986 999999999876
No 88
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.42 E-value=0.00018 Score=55.53 Aligned_cols=49 Identities=20% Similarity=0.483 Sum_probs=39.3
Q ss_pred CcCCCCHHHHHHHHHHHHHhCC---------CCccccccccC---cccccccccceeeecc
Q 021220 13 NKGAWTKEEDERLINYIKVHGE---------GCWRSLPKAAG---LLRCGKSCRLRWINYL 61 (316)
Q Consensus 13 kKg~WT~EEDe~L~~lV~kyG~---------~nW~~IAk~l~---~~Rt~kQCr~Rw~n~L 61 (316)
+...||.+|...|+.++..+.. .-|..||..|. ..|++.||+.+|.++.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5678999999999999975321 14999998863 4699999999998863
No 89
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.82 E-value=0.02 Score=55.70 Aligned_cols=101 Identities=20% Similarity=0.282 Sum_probs=76.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccCccccccccc-------ceeeec---------------------------
Q 021220 15 GAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCR-------LRWINY--------------------------- 60 (316)
Q Consensus 15 g~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr-------~Rw~n~--------------------------- 60 (316)
+.||.-|=..++.+..+||-.+-..||..|+++++...++ .||..+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999888999999997237766665 111110
Q ss_pred -------------c--C--CC-CCCCCCCHHHHHHHHHHHHhhC----CchhHHhhc------------CCCCCHHHHHH
Q 021220 61 -------------L--R--PD-LKRGNFTEEEDELIINFHSLLG----NKWSLIAAR------------LPGRTDNEIKN 106 (316)
Q Consensus 61 -------------L--~--p~-lkrg~WT~EEDe~Llelv~~~G----nkWs~IA~~------------lpgRT~~qckn 106 (316)
| . +. -+...||++||..|+-++.+|| +.|..|-.. |..||+..|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 0 0 11 1345799999999999999999 469999432 46699999999
Q ss_pred HHHHhhhhh
Q 021220 107 YWNTHIKRK 115 (316)
Q Consensus 107 RW~~~lk~k 115 (316)
|-..+|+-.
T Consensus 284 Rc~tLi~~I 292 (374)
T 2y9y_A 284 RGNTLLQCL 292 (374)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998654
No 90
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=94.70 E-value=0.0017 Score=48.73 Aligned_cols=45 Identities=13% Similarity=0.282 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHHHhCC--CCccccccccCcccccccccceeeeccC
Q 021220 16 AWTKEEDERLINYIKVHGE--GCWRSLPKAAGLLRCGKSCRLRWINYLR 62 (316)
Q Consensus 16 ~WT~EEDe~L~~lV~kyG~--~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~ 62 (316)
.||.|||..|+....+.|. .-|..||..+ + |++.|+..||..++.
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-n-ks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-D-KNPNQVSERFQQLMK 62 (70)
Confidence 5999999999999998886 2599999999 4 999999999988654
No 91
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.42 E-value=0.089 Score=38.93 Aligned_cols=48 Identities=15% Similarity=0.035 Sum_probs=40.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCc---hhHHhhcC--CCCCHHHHHHHHHHhh
Q 021220 65 LKRGNFTEEEDELIINFHSLLGNK---WSLIAARL--PGRTDNEIKNYWNTHI 112 (316)
Q Consensus 65 lkrg~WT~EEDe~Llelv~~~Gnk---Ws~IA~~l--pgRT~~qcknRW~~~l 112 (316)
..+-.||+|..+..+++|.++|.+ |..|-+.| +|.|..+|+.|...+.
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999965 78998885 7899999998876654
No 92
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=94.11 E-value=0.074 Score=50.41 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHhhC-CchhHHhhcCCCCCHHHHHHHHHHhhh
Q 021220 67 RGNFTEEEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYWNTHIK 113 (316)
Q Consensus 67 rg~WT~EEDe~Llelv~~~G-nkWs~IA~~lpgRT~~qcknRW~~~lk 113 (316)
-+.||..|...++.++.+|| ++|..||..|+|+|..+|+.++.....
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ 157 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWE 157 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 35899999999999999999 589999999999999999887765544
No 93
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.00 E-value=0.043 Score=48.26 Aligned_cols=39 Identities=31% Similarity=0.533 Sum_probs=31.5
Q ss_pred CcccCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccc
Q 021220 5 PCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKA 43 (316)
Q Consensus 5 ~~~~K~~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~ 43 (316)
|+..++......||.+||..|+..|.+||.++|..|-.-
T Consensus 125 ~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 125 PCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp CSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 444455545567999999999999999999999998653
No 94
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=91.56 E-value=0.045 Score=43.38 Aligned_cols=49 Identities=16% Similarity=0.239 Sum_probs=39.1
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCc----ccccccccceeeec
Q 021220 11 HTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGL----LRCGKSCRLRWINY 60 (316)
Q Consensus 11 ~~kKg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~----~Rt~kQCr~Rw~n~ 60 (316)
+++...||.||.+.|..++++|.. .|-.|+..... .|+.-++++||..+
T Consensus 27 ~L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V 79 (93)
T 4iej_A 27 YLHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp HTCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence 345578999999999999999995 59999987641 37777777777664
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=89.69 E-value=0.26 Score=45.85 Aligned_cols=28 Identities=39% Similarity=0.730 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccc
Q 021220 15 GAWTKEEDERLINYIKVHGEGCWRSLPK 42 (316)
Q Consensus 15 g~WT~EEDe~L~~lV~kyG~~nW~~IAk 42 (316)
-.|+.+||..|+..|.+||.++|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4699999999999999999999999964
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=88.21 E-value=0.3 Score=45.46 Aligned_cols=27 Identities=33% Similarity=0.485 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHHHhhC-CchhHHhhc
Q 021220 69 NFTEEEDELIINFHSLLG-NKWSLIAAR 95 (316)
Q Consensus 69 ~WT~EEDe~Llelv~~~G-nkWs~IA~~ 95 (316)
.|+.+||..|+..|.+|| +.|.+|...
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 599999999999999999 899999754
No 97
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=78.16 E-value=0.64 Score=34.29 Aligned_cols=49 Identities=8% Similarity=0.106 Sum_probs=34.4
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCC--ccccccccCc-ccccccccceeee
Q 021220 11 HTNKGAWTKEEDERLINYIKVHGEGC--WRSLPKAAGL-LRCGKSCRLRWIN 59 (316)
Q Consensus 11 ~~kKg~WT~EEDe~L~~lV~kyG~~n--W~~IAk~l~~-~Rt~kQCr~Rw~n 59 (316)
...+-.||+|..++++.+|...|... +..|.+.|+. +.+..++..|.+.
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 34567899999999999999999331 5677777653 1466666555443
No 98
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=63.87 E-value=13 Score=36.03 Aligned_cols=44 Identities=27% Similarity=0.363 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHHhhC-CchhHHhhcCC-CCCHHHHHHHHHHh
Q 021220 68 GNFTEEEDELIINFHSLLG-NKWSLIAARLP-GRTDNEIKNYWNTH 111 (316)
Q Consensus 68 g~WT~EEDe~Llelv~~~G-nkWs~IA~~lp-gRT~~qcknRW~~~ 111 (316)
+.||.-|=..++.+..+|| ++-..||..|. |+|..+|+.+....
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vF 169 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAF 169 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 5799999999999999999 56999999997 99999999655433
No 99
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=63.69 E-value=8.4 Score=26.58 Aligned_cols=41 Identities=17% Similarity=0.138 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220 73 EEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKR 114 (316)
Q Consensus 73 EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk~ 114 (316)
+.+..++.++...|-.+..||..| |-+...|+.+....+++
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455666777777888999999999 89999999888765543
No 100
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=60.82 E-value=10 Score=26.99 Aligned_cols=42 Identities=14% Similarity=0.279 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHh----hCCchhHHhhcCCCCCHHHHHHHHHHhhhhh
Q 021220 73 EEDELIINFHSL----LGNKWSLIAARLPGRTDNEIKNYWNTHIKRK 115 (316)
Q Consensus 73 EEDe~Llelv~~----~GnkWs~IA~~lpgRT~~qcknRW~~~lk~k 115 (316)
+.+..++.+... .|-.|.+||..| |-+...|+.+....+++-
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 445556666654 577899999999 999999999887765443
No 101
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=56.00 E-value=15 Score=29.40 Aligned_cols=38 Identities=13% Similarity=0.250 Sum_probs=29.1
Q ss_pred HHHHHHHhhCC--------chhHHhhcCCCCC----HHHHHHHHHHhhhh
Q 021220 77 LIINFHSLLGN--------KWSLIAARLPGRT----DNEIKNYWNTHIKR 114 (316)
Q Consensus 77 ~Llelv~~~Gn--------kWs~IA~~lpgRT----~~qcknRW~~~lk~ 114 (316)
+|..+|.+.|+ .|..|+..|.--. ..++|..|..+|.+
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 37777888874 5999999983322 57899999998875
No 102
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=55.77 E-value=11 Score=26.39 Aligned_cols=41 Identities=5% Similarity=0.130 Sum_probs=31.1
Q ss_pred HHHHHHHHHHH----hhCCchhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220 73 EEDELIINFHS----LLGNKWSLIAARLPGRTDNEIKNYWNTHIKR 114 (316)
Q Consensus 73 EEDe~Llelv~----~~GnkWs~IA~~lpgRT~~qcknRW~~~lk~ 114 (316)
+.+..++.+.. ..|-.+.+||..| |-+...|+.+....+++
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44555555555 3467899999999 99999999988876654
No 103
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=55.19 E-value=7.8 Score=31.01 Aligned_cols=37 Identities=16% Similarity=0.353 Sum_probs=29.9
Q ss_pred HHHHHHhhCC--------chhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220 78 IINFHSLLGN--------KWSLIAARLPGRTDNEIKNYWNTHIKR 114 (316)
Q Consensus 78 Llelv~~~Gn--------kWs~IA~~lpgRT~~qcknRW~~~lk~ 114 (316)
|..+|...|+ .|..||..|.--....++..|..+|-+
T Consensus 54 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 54 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 8888888874 599999997444478999999998865
No 104
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=54.86 E-value=17 Score=28.33 Aligned_cols=38 Identities=16% Similarity=0.300 Sum_probs=28.4
Q ss_pred HHHHHHHhhCC--------chhHHhhcCCCCC----HHHHHHHHHHhhhh
Q 021220 77 LIINFHSLLGN--------KWSLIAARLPGRT----DNEIKNYWNTHIKR 114 (316)
Q Consensus 77 ~Llelv~~~Gn--------kWs~IA~~lpgRT----~~qcknRW~~~lk~ 114 (316)
+|..+|.+.|+ .|..||..|.--. ..++|..|..+|.+
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 36777777774 5999999983322 47889999988865
No 105
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=53.65 E-value=42 Score=25.95 Aligned_cols=87 Identities=13% Similarity=0.093 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeeccCC------CCCCCCCCHHHHHHHHHHHHhhC-C
Q 021220 15 GAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRP------DLKRGNFTEEEDELIINFHSLLG-N 87 (316)
Q Consensus 15 g~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p------~lkrg~WT~EEDe~Llelv~~~G-n 87 (316)
...|.++-..++.++. -| ..-..||+.++ .+...++ +|...... .-.....+.+++..|+++ ...+ -
T Consensus 5 ~~~s~~~r~~i~~~~~-~G-~s~~~ia~~lg--is~~Tv~-r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~-~~~~~~ 78 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LN-VSLHEMSRKIS--RSRHCIR-VYLKDPVSYGTSKRAPRRKALSVRDERNVIRA-ASNSCK 78 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TT-CCHHHHHHHHT--CCHHHHH-HHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHH-HHHCCC
T ss_pred ccCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHHH-HHHHcccccCCcCCCCCCCcCCHHHHHHHHHH-HhCCCC
Confidence 3578888887777763 45 34688999887 4444443 23222111 111235788888888887 3333 2
Q ss_pred chhHHhhcCCC--CCHHHHHHHH
Q 021220 88 KWSLIAARLPG--RTDNEIKNYW 108 (316)
Q Consensus 88 kWs~IA~~lpg--RT~~qcknRW 108 (316)
.=.+|+..| | -+...|....
T Consensus 79 s~~~i~~~l-g~~~s~~tV~r~l 100 (141)
T 1u78_A 79 TARDIRNEL-QLSASKRTILNVI 100 (141)
T ss_dssp CHHHHHHHT-TCCSCHHHHHHHH
T ss_pred CHHHHHHHH-CCCccHHHHHHHH
Confidence 346788887 4 5777666544
No 106
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=51.13 E-value=11 Score=30.57 Aligned_cols=38 Identities=16% Similarity=0.325 Sum_probs=30.2
Q ss_pred HHHHHHhhCC--------chhHHhhcCCCCCHHHHHHHHHHhhhhh
Q 021220 78 IINFHSLLGN--------KWSLIAARLPGRTDNEIKNYWNTHIKRK 115 (316)
Q Consensus 78 Llelv~~~Gn--------kWs~IA~~lpgRT~~qcknRW~~~lk~k 115 (316)
|..+|.+.|+ .|..|+..|.--....+|..|..+|.+-
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 7777777774 5999999974444899999999998764
No 107
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=50.94 E-value=20 Score=28.90 Aligned_cols=38 Identities=16% Similarity=0.307 Sum_probs=28.7
Q ss_pred HHHHHHhhCC--------chhHHhhcCCCCC----HHHHHHHHHHhhhhh
Q 021220 78 IINFHSLLGN--------KWSLIAARLPGRT----DNEIKNYWNTHIKRK 115 (316)
Q Consensus 78 Llelv~~~Gn--------kWs~IA~~lpgRT----~~qcknRW~~~lk~k 115 (316)
|..+|.+.|+ +|..|+..|.--. ...+|..|..+|.+-
T Consensus 47 Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 47 LNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 7777777774 5999999983322 468999999988763
No 108
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=50.07 E-value=21 Score=28.85 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=29.3
Q ss_pred HHHHHHHhhCC--------chhHHhhcCCCCC----HHHHHHHHHHhhhhh
Q 021220 77 LIINFHSLLGN--------KWSLIAARLPGRT----DNEIKNYWNTHIKRK 115 (316)
Q Consensus 77 ~Llelv~~~Gn--------kWs~IA~~lpgRT----~~qcknRW~~~lk~k 115 (316)
+|..+|.++|+ .|..||..|.--+ ..++|..|..+|.+-
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 37777777774 5999999983322 468999999988764
No 109
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=47.57 E-value=53 Score=26.46 Aligned_cols=91 Identities=13% Similarity=0.053 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeec------cCCCCC----CCCCCHHHHHHHHHHHHh
Q 021220 15 GAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY------LRPDLK----RGNFTEEEDELIINFHSL 84 (316)
Q Consensus 15 g~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~------L~p~lk----rg~WT~EEDe~Llelv~~ 84 (316)
.+.|.++-..++.++. .| .....||+.++ .+...++ ||.+. +.+... ....+.++.+.|++++.+
T Consensus 24 ~~~s~e~r~~ii~l~~-~G-~s~~~IA~~lg--is~~TV~-rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 98 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QG-VRPCDISRQLR--VSHGCVS-KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQ 98 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HT-CCHHHHHHHHT--CCSHHHH-HHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHHH-HHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4688888888888774 45 35788999987 3444433 33332 222211 234788888888888876
Q ss_pred hC-CchhHHhhcC---------CCCCHHHHHHHHHH
Q 021220 85 LG-NKWSLIAARL---------PGRTDNEIKNYWNT 110 (316)
Q Consensus 85 ~G-nkWs~IA~~l---------pgRT~~qcknRW~~ 110 (316)
.. -.-.+|+..| ..-+...|+...+.
T Consensus 99 ~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~ 134 (159)
T 2k27_A 99 NPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRT 134 (159)
T ss_dssp CSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHhcccccCCccCHHHHHHHHHH
Confidence 43 2223455444 13566677665444
No 110
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=45.93 E-value=26 Score=25.91 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhh
Q 021220 73 EEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIK 113 (316)
Q Consensus 73 EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk 113 (316)
+.+..++.++...|-.-..||..| |.+...|+.+....++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~ 79 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVR 79 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 345556666666788899999999 9999999988876554
No 111
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=43.40 E-value=20 Score=29.49 Aligned_cols=45 Identities=9% Similarity=-0.023 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhC-CchhHHhhcCCCCCHHHHHHHHHHhhhhhhhc
Q 021220 73 EEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYWNTHIKRKLYS 118 (316)
Q Consensus 73 EEDe~Llelv~~~G-nkWs~IA~~lpgRT~~qcknRW~~~lk~k~~~ 118 (316)
+-|.+|+++.++.| -.|..||+.+ |-|...|+.|++.+.+..+..
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 56888898888877 4799999999 999999999998877766554
No 112
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=43.26 E-value=15 Score=28.07 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=27.3
Q ss_pred HHHHHHhhCC--------chhHHhhcCCCC----CHHHHHHHHHHhhhh
Q 021220 78 IINFHSLLGN--------KWSLIAARLPGR----TDNEIKNYWNTHIKR 114 (316)
Q Consensus 78 Llelv~~~Gn--------kWs~IA~~lpgR----T~~qcknRW~~~lk~ 114 (316)
|..+|.+.|+ .|.+|+..|.-- ...++|..|..+|.+
T Consensus 41 Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 41 LSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 7777777763 599999997321 256889999887764
No 113
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=42.36 E-value=33 Score=23.86 Aligned_cols=35 Identities=11% Similarity=-0.054 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHH
Q 021220 73 EEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYW 108 (316)
Q Consensus 73 EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW 108 (316)
-|.+.|.+++..+++++.+.|+.| |=+...+..+.
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~rkl 53 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYRKI 53 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHHH
Confidence 477888999999999999999998 66666555443
No 114
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=41.78 E-value=45 Score=23.37 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220 70 FTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKR 114 (316)
Q Consensus 70 WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk~ 114 (316)
+|+.|-+ ++.++ ..|-...+||..| |-+...|+.+....+++
T Consensus 17 L~~~e~~-vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQ-VLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHH-HHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHH-HHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4454444 44555 5677899999999 88999999988775543
No 115
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=41.48 E-value=46 Score=26.42 Aligned_cols=93 Identities=12% Similarity=0.054 Sum_probs=54.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccCcccccccccceeeec------cCCCCC----CCCCCHHHHHHHHHHHH
Q 021220 14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINY------LRPDLK----RGNFTEEEDELIINFHS 83 (316)
Q Consensus 14 Kg~WT~EEDe~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~------L~p~lk----rg~WT~EEDe~Llelv~ 83 (316)
..+.|.++-..++.++. .| .....||+.++ .+...++ +|... +.+... ....+.++.+.|++++.
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G-~s~~~iA~~lg--is~~TV~-rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 104 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QG-VRPCDISRQLR--VSHGCVS-KILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKR 104 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TT-CCHHHHHHHHT--CCHHHHH-HHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHHH-HHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34689888888888774 45 34788999987 3444433 33321 222222 23478888888888887
Q ss_pred hhCC-chhHHhhcC---------CCCCHHHHHHHHHHh
Q 021220 84 LLGN-KWSLIAARL---------PGRTDNEIKNYWNTH 111 (316)
Q Consensus 84 ~~Gn-kWs~IA~~l---------pgRT~~qcknRW~~~ 111 (316)
+.+. .-..|+..| ..-+...|+...+..
T Consensus 105 ~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~ 142 (149)
T 1k78_A 105 QNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTK 142 (149)
T ss_dssp HCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC
T ss_pred hCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHH
Confidence 6432 223455444 125666666554433
No 116
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=39.84 E-value=38 Score=27.34 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=29.4
Q ss_pred HHHHHHHhhCC--------chhHHhhcCC--CC---CHHHHHHHHHHhhhhh
Q 021220 77 LIINFHSLLGN--------KWSLIAARLP--GR---TDNEIKNYWNTHIKRK 115 (316)
Q Consensus 77 ~Llelv~~~Gn--------kWs~IA~~lp--gR---T~~qcknRW~~~lk~k 115 (316)
+|..+|...|+ .|..|+..|. .. ....+|..|..+|.+-
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 37777778774 5999999972 22 2578999999988763
No 117
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=39.69 E-value=38 Score=26.50 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHH
Q 021220 71 TEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKN 106 (316)
Q Consensus 71 T~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qckn 106 (316)
++.-+..|..+....|..|..+|..| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 66678888889999999999999999 877776644
No 118
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=39.31 E-value=34 Score=28.39 Aligned_cols=39 Identities=10% Similarity=0.167 Sum_probs=29.2
Q ss_pred HHHHHHHhhCC--------chhHHhhcCC--CC---CHHHHHHHHHHhhhhh
Q 021220 77 LIINFHSLLGN--------KWSLIAARLP--GR---TDNEIKNYWNTHIKRK 115 (316)
Q Consensus 77 ~Llelv~~~Gn--------kWs~IA~~lp--gR---T~~qcknRW~~~lk~k 115 (316)
+|..+|.+.|+ .|..|+..|. .. ....+|..|..+|.+-
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~y 119 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 119 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 37777777774 5999999983 22 2578999999988763
No 119
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=38.56 E-value=45 Score=24.95 Aligned_cols=37 Identities=16% Similarity=0.035 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHH
Q 021220 72 EEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWN 109 (316)
Q Consensus 72 ~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~ 109 (316)
.-|.+.|.+++..++++..+.|+.| |=+...++.+.+
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rklk 86 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAKLK 86 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHHHH
Confidence 3477888899999999999999999 888777765543
No 120
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=37.75 E-value=37 Score=24.92 Aligned_cols=41 Identities=5% Similarity=0.121 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHh----hCCchhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220 73 EEDELIINFHSL----LGNKWSLIAARLPGRTDNEIKNYWNTHIKR 114 (316)
Q Consensus 73 EEDe~Llelv~~----~GnkWs~IA~~lpgRT~~qcknRW~~~lk~ 114 (316)
+.+..++.+... .|-.+..||..| |-+...|+.+....+++
T Consensus 21 ~~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 21 PREAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 345556666554 567899999999 99999999988765544
No 121
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=37.01 E-value=41 Score=27.26 Aligned_cols=79 Identities=14% Similarity=0.218 Sum_probs=50.2
Q ss_pred CCCcCCCCHHHH--HHHHHHHHHhCCCCccccccccCcccccccccceeeeccCCCCCCCCCCHHHHHHHHHHHHhhCC-
Q 021220 11 HTNKGAWTKEED--ERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIINFHSLLGN- 87 (316)
Q Consensus 11 ~~kKg~WT~EED--e~L~~lV~kyG~~nW~~IAk~l~~~Rt~kQCr~Rw~n~L~p~lkrg~WT~EEDe~Llelv~~~Gn- 87 (316)
|.=+.+|.+.+. +.|..+....|.- ...++.. ++ |.- +. -+|..+|.+.|+
T Consensus 4 ~~~~~r~~~~~~Fl~~L~~F~~~rGtp-l~~~P~i-~g-k~l--------DL---------------~~Ly~~V~~~GG~ 57 (121)
T 2rq5_A 4 GSLGRRWGPNVQRLACIKKHLRSQGIT-MDELPLI-GG-CEL--------DL---------------ACFFRLINEMGGM 57 (121)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHHTTCC-CSSCCEE-TT-EEC--------CH---------------HHHHHHHHHTTSH
T ss_pred HHhhHhcCCcHHHHHHHHHHHHHcCCC-CCCCCcC-CC-Eec--------cH---------------HHHHHHHHHcCcH
Confidence 344678987765 5566677777743 5555533 22 111 11 237777888874
Q ss_pred -------chhHHhhcC--CCC---CHHHHHHHHHHhhhhh
Q 021220 88 -------KWSLIAARL--PGR---TDNEIKNYWNTHIKRK 115 (316)
Q Consensus 88 -------kWs~IA~~l--pgR---T~~qcknRW~~~lk~k 115 (316)
.|..||..| |.- ....+|.+|..+|-+-
T Consensus 58 ~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y 97 (121)
T 2rq5_A 58 QQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY 97 (121)
T ss_dssp HHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH
T ss_pred HHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH
Confidence 599999998 321 2568899999888653
No 122
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=36.69 E-value=44 Score=27.16 Aligned_cols=29 Identities=14% Similarity=0.037 Sum_probs=23.7
Q ss_pred hCCchhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220 85 LGNKWSLIAARLPGRTDNEIKNYWNTHIKR 114 (316)
Q Consensus 85 ~GnkWs~IA~~lpgRT~~qcknRW~~~lk~ 114 (316)
.|-....||..| |-+...|+.+....+++
T Consensus 155 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 155 DGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 356789999999 99999999988775543
No 123
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=35.61 E-value=49 Score=22.71 Aligned_cols=44 Identities=16% Similarity=0.159 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220 68 GNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKR 114 (316)
Q Consensus 68 g~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk~ 114 (316)
..+|+.|-+.|.- + ..|-...+||..| |-+...|+.+....+++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 4567766665554 4 5677899999999 88999999988775543
No 124
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=34.93 E-value=23 Score=30.60 Aligned_cols=28 Identities=32% Similarity=0.604 Sum_probs=21.0
Q ss_pred CCCcCCCCHHHHHHHH--------HHHHHhCCCCccccc
Q 021220 11 HTNKGAWTKEEDERLI--------NYIKVHGEGCWRSLP 41 (316)
Q Consensus 11 ~~kKg~WT~EEDe~L~--------~lV~kyG~~nW~~IA 41 (316)
.--.|.||+|+|+.|. +++++|| |..|.
T Consensus 111 ~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG---~erie 146 (168)
T 3cz6_A 111 PNVPGIWTHDDDESLKSNDQEQIRKLVKKHG---TGRME 146 (168)
T ss_dssp TTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC---HHHHH
T ss_pred CCCCCCCChhhHHHHHcCCHHHHHHHHHHhC---HHHHH
Confidence 3558999999999875 5778887 44554
No 125
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=34.86 E-value=6.1 Score=32.24 Aligned_cols=57 Identities=14% Similarity=0.202 Sum_probs=41.3
Q ss_pred HHHHHHHHhCC-------CCccccccccCccccc----ccccceeeeccCCCCCCCCCCHHHHHHHHHHHH
Q 021220 24 RLINYIKVHGE-------GCWRSLPKAAGLLRCG----KSCRLRWINYLRPDLKRGNFTEEEDELIINFHS 83 (316)
Q Consensus 24 ~L~~lV~kyG~-------~nW~~IAk~l~~~Rt~----kQCr~Rw~n~L~p~lkrg~WT~EEDe~Llelv~ 83 (316)
+|..+|.+.|. +-|..|+..|+...+. ...+..|.+||.+- ...+++|-..|.+-|.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 57788888874 3599999999763322 45678888888653 2478889888887765
No 126
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=34.85 E-value=36 Score=27.06 Aligned_cols=31 Identities=23% Similarity=0.481 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhCCchhHHhhcCCCCCHHHHHH
Q 021220 75 DELIINFHSLLGNKWSLIAARLPGRTDNEIKN 106 (316)
Q Consensus 75 De~Llelv~~~GnkWs~IA~~lpgRT~~qckn 106 (316)
|..|..+....|..|..+|..| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567888899999999999999 777776644
No 127
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=34.81 E-value=38 Score=27.01 Aligned_cols=29 Identities=24% Similarity=0.460 Sum_probs=23.1
Q ss_pred HHHHHHHhhCCchhHHhhcCCCCCHHHHHH
Q 021220 77 LIINFHSLLGNKWSLIAARLPGRTDNEIKN 106 (316)
Q Consensus 77 ~Llelv~~~GnkWs~IA~~lpgRT~~qckn 106 (316)
.|..++...|.+|..+|+.| |=+..+|..
T Consensus 26 ~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp HHHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 46667888999999999998 777766643
No 128
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=34.79 E-value=49 Score=24.06 Aligned_cols=43 Identities=23% Similarity=0.306 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220 69 NFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKR 114 (316)
Q Consensus 69 ~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk~ 114 (316)
..|+.|-+.|. ++ ..|-.-.+||..| |-+...|+.+....+++
T Consensus 21 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILK-LI-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 46666655544 44 5678899999999 89999999988776544
No 129
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=34.69 E-value=51 Score=24.66 Aligned_cols=43 Identities=23% Similarity=0.258 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220 69 NFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKR 114 (316)
Q Consensus 69 ~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk~ 114 (316)
..|+.|-+.|.- + ..|-.-.+||..| |-+...|+.+....+++
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 466666655544 5 6777889999999 99999999988776544
No 130
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=34.13 E-value=40 Score=26.92 Aligned_cols=29 Identities=24% Similarity=0.460 Sum_probs=22.9
Q ss_pred HHHHHHHhhCCchhHHhhcCCCCCHHHHHH
Q 021220 77 LIINFHSLLGNKWSLIAARLPGRTDNEIKN 106 (316)
Q Consensus 77 ~Llelv~~~GnkWs~IA~~lpgRT~~qckn 106 (316)
.|..++...|.+|..+|+.| |=+..+|..
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~ 54 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 46667888999999999998 777666543
No 131
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=33.77 E-value=66 Score=24.05 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220 67 RGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKR 114 (316)
Q Consensus 67 rg~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk~ 114 (316)
....|+.|-+.|.-++ .|-.-.+||..| |-+...|+.+...++++
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4467887777665544 788899999999 99999999999886654
No 132
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=32.97 E-value=24 Score=27.54 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=28.2
Q ss_pred HHHHHHHhhCC--------chhHHhhcCCC--C---CHHHHHHHHHHhhhhh
Q 021220 77 LIINFHSLLGN--------KWSLIAARLPG--R---TDNEIKNYWNTHIKRK 115 (316)
Q Consensus 77 ~Llelv~~~Gn--------kWs~IA~~lpg--R---T~~qcknRW~~~lk~k 115 (316)
+|..+|.+.|+ .|..||..|.- . ...+++..|..+|.+-
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~y 88 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPY 88 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 36777777773 59999999732 1 2468999999988763
No 133
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=32.79 E-value=60 Score=21.53 Aligned_cols=38 Identities=8% Similarity=0.099 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220 75 DELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKR 114 (316)
Q Consensus 75 De~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk~ 114 (316)
+..++.+ ...|-.-.+||..| |-+...|+.+....+++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3445566 35577789999999 99999999988776654
No 134
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=31.61 E-value=84 Score=19.07 Aligned_cols=38 Identities=16% Similarity=0.297 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHH
Q 021220 69 NFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYW 108 (316)
Q Consensus 69 ~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW 108 (316)
..+.++-..++.++ .-|-....||+.| |-+...|+.+.
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 35666666677665 3477799999999 88888887654
No 135
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=31.50 E-value=29 Score=28.12 Aligned_cols=29 Identities=21% Similarity=0.085 Sum_probs=23.5
Q ss_pred hCCchhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220 85 LGNKWSLIAARLPGRTDNEIKNYWNTHIKR 114 (316)
Q Consensus 85 ~GnkWs~IA~~lpgRT~~qcknRW~~~lk~ 114 (316)
.|-....||..| |-+...|+.+....+++
T Consensus 150 ~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 150 GDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp SCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 356689999999 89999999988776544
No 136
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=30.98 E-value=67 Score=25.02 Aligned_cols=39 Identities=10% Similarity=0.047 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhh
Q 021220 74 EDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIK 113 (316)
Q Consensus 74 EDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk 113 (316)
.+..++.++...|-....||..| |-+...|+.+....++
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~ 67 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGD 67 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 44556666666788899999999 9999999988776544
No 137
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=30.20 E-value=31 Score=29.81 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=14.4
Q ss_pred CCCCCCCCCHHHHHHHH
Q 021220 63 PDLKRGNFTEEEDELII 79 (316)
Q Consensus 63 p~lkrg~WT~EEDe~Ll 79 (316)
|.-..|-||.|+|+.|.
T Consensus 110 P~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK 126 (168)
T ss_dssp CTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCChhhHHHHH
Confidence 45678999999999875
No 138
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=28.87 E-value=60 Score=25.32 Aligned_cols=31 Identities=35% Similarity=0.626 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhCCchhHHhhcCCCCCHHHHHH
Q 021220 75 DELIINFHSLLGNKWSLIAARLPGRTDNEIKN 106 (316)
Q Consensus 75 De~Llelv~~~GnkWs~IA~~lpgRT~~qckn 106 (316)
++.|..+....|.+|..+|+.| |=+..+|..
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 3456667778899999999999 777776644
No 139
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=28.61 E-value=67 Score=26.77 Aligned_cols=36 Identities=11% Similarity=0.042 Sum_probs=26.4
Q ss_pred HHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhh
Q 021220 77 LIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIK 113 (316)
Q Consensus 77 ~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk 113 (316)
.++.+....|-...+||..| |-+...|+.+....++
T Consensus 194 ~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~ 229 (239)
T 1rp3_A 194 LVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALE 229 (239)
T ss_dssp HHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 33334334466799999999 9999999988866544
No 140
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=28.15 E-value=70 Score=26.63 Aligned_cols=46 Identities=17% Similarity=0.141 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhhC-CchhHHhhcCCCCCHHHHHHHHHHhhhhhhhc
Q 021220 72 EEEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYWNTHIKRKLYS 118 (316)
Q Consensus 72 ~EEDe~Llelv~~~G-nkWs~IA~~lpgRT~~qcknRW~~~lk~k~~~ 118 (316)
.+-|.+|+.+.+..| -.|..||+.+ |-+...|+.|++.+.+..+..
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I~ 72 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 72 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 456777888887766 4799999999 899999999998877665543
No 141
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=27.98 E-value=60 Score=24.34 Aligned_cols=37 Identities=16% Similarity=0.070 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHH
Q 021220 71 TEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYW 108 (316)
Q Consensus 71 T~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW 108 (316)
.+-|.+.|.+++.+++++..+.|+.| |=+...++.+-
T Consensus 39 ~~~Er~~I~~aL~~~~GN~s~AA~~L-GISR~TLyrKL 75 (81)
T 1umq_A 39 DRVRWEHIQRIYEMCDRNVSETARRL-NMHRRTLQRIL 75 (81)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHH-TSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHh-CCCHHHHHHHH
Confidence 34567778899999999999999998 77776665443
No 142
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=27.85 E-value=91 Score=24.76 Aligned_cols=45 Identities=16% Similarity=0.082 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhhC-CchhHHhhcCCCCCHHHHHHHHHHhhhhhhhc
Q 021220 73 EEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYWNTHIKRKLYS 118 (316)
Q Consensus 73 EEDe~Llelv~~~G-nkWs~IA~~lpgRT~~qcknRW~~~lk~k~~~ 118 (316)
+-|..|+.+.+..| -.+..||+.+ |-+...|+.+.+.+.+..+..
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEE
Confidence 45667778777766 4799999999 889999999998887765553
No 143
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=27.22 E-value=61 Score=25.20 Aligned_cols=28 Identities=25% Similarity=0.205 Sum_probs=22.7
Q ss_pred hCCchhHHhhcCCCCCHHHHHHHHHHhhh
Q 021220 85 LGNKWSLIAARLPGRTDNEIKNYWNTHIK 113 (316)
Q Consensus 85 ~GnkWs~IA~~lpgRT~~qcknRW~~~lk 113 (316)
.|-....||..| |-+...|+.+....++
T Consensus 123 ~g~s~~EIA~~l-gis~~tV~~~~~ra~~ 150 (164)
T 3mzy_A 123 RGYSYREIATIL-SKNLKSIDNTIQRIRK 150 (164)
T ss_dssp TTCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 456789999999 8999999988876554
No 144
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=25.76 E-value=63 Score=23.71 Aligned_cols=43 Identities=21% Similarity=0.125 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhhh
Q 021220 69 NFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKR 114 (316)
Q Consensus 69 ~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk~ 114 (316)
..|+.|-+.| .++ ..|-.-.+||..| |-+...|+.+....+++
T Consensus 29 ~Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREMEIL-LLI-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHHHHH-HHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4566665555 444 5677889999999 99999999988776544
No 145
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=25.01 E-value=93 Score=24.84 Aligned_cols=45 Identities=18% Similarity=0.124 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhhC-CchhHHhhcCCCCCHHHHHHHHHHhhhhhhhc
Q 021220 73 EEDELIINFHSLLG-NKWSLIAARLPGRTDNEIKNYWNTHIKRKLYS 118 (316)
Q Consensus 73 EEDe~Llelv~~~G-nkWs~IA~~lpgRT~~qcknRW~~~lk~k~~~ 118 (316)
+-|..|+.+....| -.+..||+.+ |-+...|..|.+.+.+..+..
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 52 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 44667777777766 4799999999 899999999998887766554
No 146
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=22.00 E-value=1.6e+02 Score=23.05 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHH
Q 021220 67 RGNFTEEEDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYW 108 (316)
Q Consensus 67 rg~WT~EEDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW 108 (316)
....|.|+-..++.++. -|.....||+.| |.+...|+...
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~s~~~iA~~l-gis~~TV~rw~ 69 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGVRPCDISRQL-RVSHGCVSKIL 69 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCCCHHHHHHHH-CcCHHHHHHHH
Confidence 34688999888988885 577889999999 88888876543
No 147
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=21.20 E-value=1.1e+02 Score=23.89 Aligned_cols=39 Identities=13% Similarity=0.055 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhCCchhHHhhcCCCCCHHHHHHHHHHhhh
Q 021220 74 EDELIINFHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIK 113 (316)
Q Consensus 74 EDe~Llelv~~~GnkWs~IA~~lpgRT~~qcknRW~~~lk 113 (316)
.+..++.++...|-.-..||..+ |-|...|+.+....++
T Consensus 26 ~~r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~ 64 (113)
T 1s7o_A 26 KQMNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEK 64 (113)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 34556666667788899999999 9999999988876554
No 148
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=20.55 E-value=66 Score=24.29 Aligned_cols=31 Identities=13% Similarity=0.262 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhCCchhHHhhcCCCCCHHHHHH
Q 021220 75 DELIINFHSLLGNKWSLIAARLPGRTDNEIKN 106 (316)
Q Consensus 75 De~Llelv~~~GnkWs~IA~~lpgRT~~qckn 106 (316)
+..+..++...|.+|..+|+.| |=+..+|..
T Consensus 14 ~~~~~~ia~~lg~~Wk~Lar~L-g~~~~~I~~ 44 (99)
T 1fad_A 14 QVAFDIVCDNVGRDWKRLAREL-KVSEAKMDG 44 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 4455566677899999999999 777776644
Done!