Query 021221
Match_columns 316
No_of_seqs 428 out of 2387
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 08:33:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021221.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021221hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 6.2E-29 1.4E-33 235.8 10.0 108 56-170 24-135 (493)
2 KOG2640 Thioredoxin [Function 99.9 2.1E-25 4.6E-30 197.5 9.4 280 26-312 24-318 (319)
3 KOG0191 Thioredoxin/protein di 99.9 5.6E-24 1.2E-28 202.2 10.6 158 77-239 43-229 (383)
4 cd03006 PDI_a_EFP1_N PDIa fami 99.9 2.4E-21 5.1E-26 152.4 12.8 101 61-163 11-113 (113)
5 KOG0910 Thioredoxin-like prote 99.9 7.4E-22 1.6E-26 158.9 9.9 95 74-168 54-149 (150)
6 cd02999 PDI_a_ERp44_like PDIa 99.9 5.7E-21 1.2E-25 147.4 11.3 92 71-163 8-100 (100)
7 PF00085 Thioredoxin: Thioredo 99.9 2.2E-20 4.8E-25 143.9 14.5 102 59-166 1-103 (103)
8 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 7E-21 1.5E-25 147.0 10.7 96 60-162 4-100 (101)
9 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 1.1E-20 2.4E-25 146.5 10.8 98 60-163 4-104 (104)
10 cd02996 PDI_a_ERp44 PDIa famil 99.8 1E-19 2.2E-24 142.2 10.5 98 59-163 3-108 (108)
11 TIGR02187 GlrX_arch Glutaredox 99.8 8.8E-20 1.9E-24 160.1 11.3 155 80-239 18-197 (215)
12 cd03002 PDI_a_MPD1_like PDI fa 99.8 1.7E-19 3.8E-24 140.8 11.0 99 60-164 3-109 (109)
13 cd03065 PDI_b_Calsequestrin_N 99.8 2.9E-19 6.2E-24 141.7 12.3 103 58-167 10-119 (120)
14 cd02956 ybbN ybbN protein fami 99.8 2.7E-19 5.9E-24 136.6 11.1 86 79-164 10-96 (96)
15 COG3118 Thioredoxin domain-con 99.8 1.3E-19 2.7E-24 160.8 10.6 107 61-169 25-132 (304)
16 cd02954 DIM1 Dim1 family; Dim1 99.8 2.1E-19 4.6E-24 140.5 10.5 78 79-156 12-90 (114)
17 PTZ00443 Thioredoxin domain-co 99.8 8.6E-19 1.9E-23 153.5 15.4 109 58-168 31-140 (224)
18 PRK09381 trxA thioredoxin; Pro 99.8 1E-18 2.2E-23 136.8 13.6 104 58-167 4-108 (109)
19 KOG0190 Protein disulfide isom 99.8 1.4E-19 3E-24 172.3 10.3 127 34-168 336-474 (493)
20 PHA02278 thioredoxin-like prot 99.8 5.7E-19 1.2E-23 136.6 11.5 84 79-162 12-100 (103)
21 cd02994 PDI_a_TMX PDIa family, 99.8 7.3E-19 1.6E-23 135.6 11.8 97 59-165 3-101 (101)
22 cd02963 TRX_DnaJ TRX domain, D 99.8 5.9E-19 1.3E-23 138.8 11.4 87 79-165 22-110 (111)
23 cd03001 PDI_a_P5 PDIa family, 99.8 2.2E-18 4.8E-23 133.0 11.4 91 69-163 10-102 (103)
24 cd03005 PDI_a_ERp46 PDIa famil 99.8 1.8E-18 3.9E-23 133.2 10.7 95 61-163 4-102 (102)
25 cd03000 PDI_a_TMX3 PDIa family 99.8 3.3E-18 7.3E-23 132.8 11.3 87 80-166 14-103 (104)
26 cd02985 TRX_CDSP32 TRX family, 99.8 7.5E-18 1.6E-22 130.7 13.2 85 79-165 13-101 (103)
27 PRK10996 thioredoxin 2; Provis 99.8 6.6E-18 1.4E-22 138.1 13.4 102 61-167 37-139 (139)
28 cd02948 TRX_NDPK TRX domain, T 99.8 4.6E-18 1E-22 131.6 11.3 85 79-165 15-101 (102)
29 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 3.6E-18 7.9E-23 131.8 10.6 99 58-163 1-104 (104)
30 KOG0907 Thioredoxin [Posttrans 99.8 7.6E-18 1.6E-22 130.6 11.3 87 78-166 18-105 (106)
31 TIGR01126 pdi_dom protein disu 99.8 6.9E-18 1.5E-22 129.7 10.4 89 79-167 11-102 (102)
32 cd02993 PDI_a_APS_reductase PD 99.8 7E-18 1.5E-22 132.2 10.4 101 59-163 3-109 (109)
33 PTZ00102 disulphide isomerase; 99.7 1.9E-17 4.2E-22 161.6 15.7 106 58-171 33-142 (477)
34 cd02997 PDI_a_PDIR PDIa family 99.7 1.1E-17 2.4E-22 129.2 10.9 91 68-163 9-104 (104)
35 cd03007 PDI_a_ERp29_N PDIa fam 99.7 5.9E-18 1.3E-22 132.7 9.1 96 62-166 4-115 (116)
36 cd02962 TMX2 TMX2 family; comp 99.7 3.6E-17 7.7E-22 135.1 14.0 90 58-152 29-126 (152)
37 PTZ00102 disulphide isomerase; 99.7 2.9E-17 6.3E-22 160.3 14.9 132 31-168 325-466 (477)
38 PLN00410 U5 snRNP protein, DIM 99.7 4.7E-17 1E-21 132.1 13.0 97 69-168 14-121 (142)
39 cd02950 TxlA TRX-like protein 99.7 6E-17 1.3E-21 132.9 13.6 102 64-170 8-113 (142)
40 cd02998 PDI_a_ERp38 PDIa famil 99.7 2.5E-17 5.5E-22 127.2 10.3 98 60-163 3-105 (105)
41 cd02965 HyaE HyaE family; HyaE 99.7 3.5E-17 7.6E-22 127.1 10.9 94 61-161 14-110 (111)
42 cd02949 TRX_NTR TRX domain, no 99.7 7.7E-17 1.7E-21 123.5 11.5 91 74-164 6-97 (97)
43 TIGR01068 thioredoxin thioredo 99.7 1E-16 2.3E-21 122.7 11.9 91 77-167 10-101 (101)
44 KOG4277 Uncharacterized conser 99.7 2.3E-17 5E-22 145.5 6.4 93 79-171 41-136 (468)
45 cd02957 Phd_like Phosducin (Ph 99.7 3.4E-16 7.4E-21 123.4 11.7 90 57-154 4-96 (113)
46 cd02989 Phd_like_TxnDC9 Phosdu 99.7 5.1E-16 1.1E-20 122.4 10.9 74 79-153 20-94 (113)
47 cd02984 TRX_PICOT TRX domain, 99.7 8.9E-16 1.9E-20 117.2 11.9 82 81-163 14-96 (97)
48 cd02961 PDI_a_family Protein D 99.7 3.1E-16 6.7E-21 119.4 9.3 85 79-163 13-101 (101)
49 cd02986 DLP Dim1 family, Dim1- 99.7 1.7E-15 3.6E-20 117.7 12.4 89 78-166 11-110 (114)
50 cd02953 DsbDgamma DsbD gamma f 99.7 3.3E-16 7.2E-21 121.4 8.6 86 79-164 9-104 (104)
51 KOG0191 Thioredoxin/protein di 99.7 5.8E-16 1.3E-20 147.3 11.7 170 61-239 146-355 (383)
52 TIGR01130 ER_PDI_fam protein d 99.6 1.2E-15 2.7E-20 147.9 12.7 105 60-171 4-113 (462)
53 PTZ00051 thioredoxin; Provisio 99.6 1.8E-15 3.9E-20 115.8 10.9 80 79-160 16-96 (98)
54 PTZ00062 glutaredoxin; Provisi 99.6 4.8E-16 1E-20 134.1 8.1 127 76-214 12-140 (204)
55 cd02992 PDI_a_QSOX PDIa family 99.6 1.4E-15 3.1E-20 120.0 10.0 98 58-161 2-110 (114)
56 PLN02309 5'-adenylylsulfate re 99.6 1.8E-15 4E-20 144.9 12.1 105 58-166 346-456 (457)
57 cd02975 PfPDO_like_N Pyrococcu 99.6 2.6E-15 5.7E-20 118.3 10.8 89 79-168 20-111 (113)
58 TIGR01130 ER_PDI_fam protein d 99.6 4.8E-15 1E-19 143.7 14.7 132 30-169 313-456 (462)
59 TIGR00424 APS_reduc 5'-adenyly 99.6 2.7E-15 5.8E-20 143.9 12.5 105 60-166 352-462 (463)
60 KOG0908 Thioredoxin-like prote 99.6 2E-15 4.3E-20 130.2 10.1 105 59-169 3-108 (288)
61 PRK15412 thiol:disulfide inter 99.6 1.2E-14 2.5E-19 124.7 14.6 88 79-168 66-177 (185)
62 cd02951 SoxW SoxW family; SoxW 99.6 6.5E-15 1.4E-19 118.0 10.6 90 78-168 10-120 (125)
63 cd02987 Phd_like_Phd Phosducin 99.6 1.2E-14 2.6E-19 123.2 12.2 83 81-165 83-173 (175)
64 cd02947 TRX_family TRX family; 99.6 2.7E-14 5.8E-19 106.6 11.3 84 80-164 9-93 (93)
65 KOG0912 Thiol-disulfide isomer 99.6 4.3E-15 9.4E-20 131.4 7.3 91 78-168 10-107 (375)
66 PRK03147 thiol-disulfide oxido 99.6 1.2E-13 2.6E-18 116.6 15.3 104 56-166 43-171 (173)
67 PRK14018 trifunctional thiored 99.5 8.4E-14 1.8E-18 135.3 15.0 87 79-165 54-171 (521)
68 TIGR01295 PedC_BrcD bacterioci 99.5 4.7E-14 1E-18 112.6 11.0 84 79-164 21-121 (122)
69 TIGR00411 redox_disulf_1 small 99.5 7.5E-14 1.6E-18 103.1 10.3 80 84-166 2-81 (82)
70 TIGR00385 dsbE periplasmic pro 99.5 5.7E-13 1.2E-17 112.9 14.8 88 79-168 61-172 (173)
71 cd02988 Phd_like_VIAF Phosduci 99.5 1.5E-13 3.3E-18 118.0 10.9 101 56-165 81-190 (192)
72 cd02952 TRP14_like Human TRX-r 99.5 2.9E-13 6.4E-18 107.0 11.0 94 69-163 9-118 (119)
73 cd02959 ERp19 Endoplasmic reti 99.5 5.8E-14 1.3E-18 111.3 7.0 99 69-168 8-114 (117)
74 cd02982 PDI_b'_family Protein 99.5 1.5E-13 3.2E-18 106.0 8.6 86 81-166 12-102 (103)
75 PRK13728 conjugal transfer pro 99.5 5.8E-13 1.3E-17 112.4 12.8 101 56-168 55-172 (181)
76 KOG1731 FAD-dependent sulfhydr 99.5 6E-14 1.3E-18 133.8 7.5 115 48-168 30-154 (606)
77 TIGR02738 TrbB type-F conjugat 99.5 1.6E-12 3.6E-17 107.6 13.7 86 80-166 49-152 (153)
78 cd03010 TlpA_like_DsbE TlpA-li 99.4 1E-12 2.2E-17 105.4 10.6 79 80-159 24-126 (127)
79 cd03011 TlpA_like_ScsD_MtbDsbE 99.4 2.7E-12 5.8E-17 102.2 10.4 96 59-162 5-121 (123)
80 PHA02125 thioredoxin-like prot 99.4 3.6E-12 7.8E-17 92.8 9.5 70 85-162 2-72 (75)
81 PF13098 Thioredoxin_2: Thiore 99.4 1.3E-12 2.8E-17 102.3 7.5 86 78-163 2-112 (112)
82 TIGR00412 redox_disulf_2 small 99.4 2.5E-12 5.5E-17 93.9 8.1 73 85-163 2-75 (76)
83 PRK00293 dipZ thiol:disulfide 99.3 4.7E-12 1E-16 125.9 11.1 98 69-167 463-570 (571)
84 cd03009 TryX_like_TryX_NRX Try 99.3 5.4E-12 1.2E-16 101.8 9.1 79 61-146 5-112 (131)
85 cd02964 TryX_like_family Trypa 99.3 7.6E-12 1.6E-16 101.2 9.1 73 62-142 4-106 (132)
86 TIGR02740 TraF-like TraF-like 99.3 1.7E-11 3.6E-16 111.0 12.0 88 80-168 165-265 (271)
87 TIGR01626 ytfJ_HI0045 conserve 99.3 3E-11 6.4E-16 102.6 12.7 119 43-163 23-176 (184)
88 cd03008 TryX_like_RdCVF Trypar 99.3 8E-12 1.7E-16 102.5 8.4 77 64-147 15-126 (146)
89 TIGR02187 GlrX_arch Glutaredox 99.3 2.1E-11 4.5E-16 107.0 11.0 82 81-165 132-214 (215)
90 PLN02919 haloacid dehalogenase 99.3 2.6E-11 5.7E-16 128.2 13.3 101 62-168 407-537 (1057)
91 cd02967 mauD Methylamine utili 99.3 1.5E-11 3.3E-16 96.5 8.5 88 59-152 5-112 (114)
92 cd02966 TlpA_like_family TlpA- 99.3 4E-11 8.7E-16 92.9 9.7 84 61-152 6-116 (116)
93 cd02955 SSP411 TRX domain, SSP 99.3 4.1E-11 8.8E-16 95.7 9.9 88 78-166 12-118 (124)
94 TIGR02661 MauD methylamine deh 99.2 9.4E-11 2E-15 100.8 10.9 105 56-166 54-178 (189)
95 PTZ00056 glutathione peroxidas 99.2 6.3E-11 1.4E-15 102.6 9.5 107 56-169 21-180 (199)
96 PF13905 Thioredoxin_8: Thiore 99.2 1.1E-10 2.3E-15 88.6 8.7 61 81-142 1-89 (95)
97 PF08534 Redoxin: Redoxin; In 99.2 1.5E-10 3.3E-15 95.0 9.7 87 62-155 16-136 (146)
98 PLN02399 phospholipid hydroper 99.2 1.8E-10 3.8E-15 101.9 10.6 106 56-168 81-235 (236)
99 cd03012 TlpA_like_DipZ_like Tl 99.2 1.9E-10 4.1E-15 92.2 9.9 82 65-153 14-125 (126)
100 cd02973 TRX_GRX_like Thioredox 99.1 1.1E-10 2.4E-15 82.8 6.4 60 84-145 2-61 (67)
101 cd03026 AhpF_NTD_C TRX-GRX-lik 99.1 4.8E-10 1E-14 84.4 9.3 77 80-160 11-87 (89)
102 cd02958 UAS UAS family; UAS is 99.1 1.1E-09 2.3E-14 86.3 10.8 99 69-168 6-112 (114)
103 PLN02412 probable glutathione 99.1 8.4E-10 1.8E-14 93.0 9.6 106 56-168 11-165 (167)
104 TIGR02540 gpx7 putative glutat 99.0 9.7E-10 2.1E-14 91.2 8.8 102 58-166 6-152 (153)
105 cd00340 GSH_Peroxidase Glutath 99.0 5.5E-10 1.2E-14 92.6 7.1 96 59-162 7-151 (152)
106 cd02969 PRX_like1 Peroxiredoxi 99.0 7.2E-09 1.6E-13 87.5 11.7 106 58-169 8-154 (171)
107 cd02960 AGR Anterior Gradient 98.9 3.1E-09 6.8E-14 85.1 8.1 80 69-153 12-99 (130)
108 smart00594 UAS UAS domain. 98.9 4.1E-09 8.9E-14 84.1 8.8 94 69-163 16-121 (122)
109 PRK11509 hydrogenase-1 operon 98.9 1.6E-08 3.5E-13 81.0 11.8 96 69-169 27-126 (132)
110 COG4232 Thiol:disulfide interc 98.9 4.3E-09 9.4E-14 102.0 7.9 91 76-166 469-567 (569)
111 PTZ00256 glutathione peroxidas 98.9 2E-08 4.4E-13 85.8 11.0 106 56-168 22-182 (183)
112 cd03014 PRX_Atyp2cys Peroxired 98.8 3.7E-08 8E-13 80.4 10.3 90 57-153 9-129 (143)
113 PRK00522 tpx lipid hydroperoxi 98.8 3.6E-08 7.8E-13 83.0 10.5 99 59-164 29-166 (167)
114 cd03017 PRX_BCP Peroxiredoxin 98.8 2.2E-08 4.8E-13 81.2 8.8 99 58-163 7-139 (140)
115 PF13899 Thioredoxin_7: Thiore 98.8 1.1E-08 2.3E-13 75.7 5.6 72 69-143 6-81 (82)
116 KOG0914 Thioredoxin-like prote 98.8 2E-08 4.2E-13 85.5 7.6 76 76-151 139-222 (265)
117 PF00578 AhpC-TSA: AhpC/TSA fa 98.8 9.1E-09 2E-13 81.6 5.4 84 59-149 10-122 (124)
118 COG0526 TrxA Thiol-disulfide i 98.8 3.1E-08 6.7E-13 76.0 8.2 82 81-162 32-119 (127)
119 KOG0913 Thiol-disulfide isomer 98.7 3.7E-09 8E-14 91.0 2.0 101 59-168 26-127 (248)
120 cd03015 PRX_Typ2cys Peroxiredo 98.7 7.6E-08 1.6E-12 81.4 9.8 97 65-168 20-158 (173)
121 cd03007 PDI_a_ERp29_N PDIa fam 98.7 1.4E-09 3E-14 85.5 -1.2 81 173-272 9-114 (116)
122 cd03018 PRX_AhpE_like Peroxire 98.7 2E-07 4.3E-12 76.5 10.7 99 58-163 11-147 (149)
123 PRK09437 bcp thioredoxin-depen 98.7 2.3E-07 5E-12 76.8 10.5 99 56-161 12-147 (154)
124 KOG4277 Uncharacterized conser 98.7 2.2E-09 4.7E-14 95.4 -2.0 58 182-244 40-116 (468)
125 PF13192 Thioredoxin_3: Thiore 98.6 2.3E-07 5E-12 67.6 8.2 73 86-164 3-76 (76)
126 TIGR02196 GlrX_YruB Glutaredox 98.6 2.9E-07 6.2E-12 65.6 8.1 69 85-164 2-74 (74)
127 cd03006 PDI_a_EFP1_N PDIa fami 98.6 9.3E-09 2E-13 80.9 -0.1 61 174-239 18-95 (113)
128 TIGR03137 AhpC peroxiredoxin. 98.6 1E-06 2.2E-11 75.6 12.3 94 66-166 23-155 (187)
129 cd02970 PRX_like2 Peroxiredoxi 98.6 3.4E-07 7.4E-12 74.8 9.1 55 59-119 7-64 (149)
130 COG2143 Thioredoxin-related pr 98.5 1.6E-06 3.5E-11 70.3 11.5 91 78-168 39-150 (182)
131 KOG2501 Thioredoxin, nucleored 98.5 1.8E-07 3.9E-12 76.6 6.2 68 80-147 32-129 (157)
132 PRK10606 btuE putative glutath 98.5 3.6E-07 7.7E-12 78.0 7.9 55 56-118 7-63 (183)
133 cd02968 SCO SCO (an acronym fo 98.4 1E-06 2.2E-11 71.6 8.3 48 58-112 6-54 (142)
134 PF13728 TraF: F plasmid trans 98.4 2.2E-06 4.8E-11 75.0 10.7 82 80-162 119-213 (215)
135 cd01659 TRX_superfamily Thiore 98.4 1.3E-06 2.9E-11 59.2 7.4 59 85-144 1-62 (69)
136 cd02971 PRX_family Peroxiredox 98.4 1.8E-06 3.9E-11 69.9 8.9 90 59-155 7-131 (140)
137 cd02991 UAS_ETEA UAS family, E 98.4 3.3E-06 7.2E-11 66.6 10.0 98 68-168 5-114 (116)
138 TIGR02200 GlrX_actino Glutared 98.4 1E-06 2.2E-11 63.7 6.5 69 85-164 2-76 (77)
139 PRK13190 putative peroxiredoxi 98.4 4.1E-06 9E-11 72.7 11.3 96 66-168 19-155 (202)
140 KOG0910 Thioredoxin-like prote 98.4 6E-08 1.3E-12 78.6 -0.7 52 185-241 61-128 (150)
141 cd03003 PDI_a_ERdj5_N PDIa fam 98.3 7.3E-08 1.6E-12 73.9 -0.7 49 186-239 19-83 (101)
142 PRK10382 alkyl hydroperoxide r 98.3 5.6E-06 1.2E-10 71.0 10.4 88 80-167 30-156 (187)
143 PF14595 Thioredoxin_9: Thiore 98.3 3.6E-06 7.8E-11 67.7 7.8 73 78-151 38-115 (129)
144 TIGR03143 AhpF_homolog putativ 98.3 9.1E-06 2E-10 81.2 12.0 149 80-234 365-535 (555)
145 cd02999 PDI_a_ERp44_like PDIa 98.2 1.3E-07 2.9E-12 72.6 -1.1 55 186-245 19-89 (100)
146 TIGR02180 GRX_euk Glutaredoxin 98.2 3.5E-06 7.7E-11 61.9 5.9 59 85-146 1-64 (84)
147 PF02114 Phosducin: Phosducin; 98.2 1E-05 2.2E-10 72.9 10.0 87 80-168 145-239 (265)
148 PRK11200 grxA glutaredoxin 1; 98.2 9.1E-06 2E-10 60.3 7.6 77 84-168 2-84 (85)
149 PRK15000 peroxidase; Provision 98.2 1.7E-05 3.7E-10 68.7 10.4 87 80-166 33-161 (200)
150 PF06110 DUF953: Eukaryotic pr 98.1 2.4E-05 5.1E-10 61.8 9.2 66 79-144 17-98 (119)
151 KOG0911 Glutaredoxin-related p 98.1 1.8E-06 4E-11 74.2 2.8 77 79-156 15-92 (227)
152 cd02994 PDI_a_TMX PDIa family, 98.1 4.7E-07 1E-11 69.3 -0.8 52 188-244 19-87 (101)
153 cd02996 PDI_a_ERp44 PDIa famil 98.1 4.1E-07 8.9E-12 70.6 -1.3 49 186-239 19-89 (108)
154 cd03016 PRX_1cys Peroxiredoxin 98.1 4.8E-05 1E-09 66.1 11.4 96 66-167 16-154 (203)
155 PLN02309 5'-adenylylsulfate re 98.1 3.4E-07 7.4E-12 88.3 -2.3 70 184-272 364-455 (457)
156 cd02993 PDI_a_APS_reductase PD 98.1 3.7E-07 7.9E-12 71.2 -1.8 50 185-239 21-89 (109)
157 PRK13599 putative peroxiredoxi 98.0 6.6E-05 1.4E-09 65.8 11.8 101 59-166 13-155 (215)
158 TIGR02739 TraF type-F conjugat 98.0 4.4E-05 9.5E-10 68.3 10.5 88 80-168 149-249 (256)
159 PF03190 Thioredox_DsbH: Prote 98.0 1.5E-05 3.2E-10 66.2 6.9 70 78-148 34-117 (163)
160 TIGR00424 APS_reduc 5'-adenyly 98.0 5.5E-07 1.2E-11 87.0 -2.1 50 185-239 371-439 (463)
161 cd03004 PDI_a_ERdj5_C PDIa fam 98.0 1.4E-06 3.1E-11 67.0 0.3 47 187-238 21-83 (104)
162 PTZ00137 2-Cys peroxiredoxin; 98.0 7.6E-05 1.7E-09 67.1 11.4 96 66-167 89-225 (261)
163 PRK13703 conjugal pilus assemb 98.0 5.8E-05 1.3E-09 67.2 10.4 89 80-168 142-242 (248)
164 PTZ00443 Thioredoxin domain-co 98.0 1.7E-06 3.7E-11 76.1 0.6 54 186-244 53-122 (224)
165 TIGR03143 AhpF_homolog putativ 98.0 3.5E-05 7.6E-10 77.0 9.9 79 81-163 475-554 (555)
166 PHA02278 thioredoxin-like prot 98.0 1.2E-06 2.6E-11 67.7 -0.6 52 185-241 14-85 (103)
167 cd02985 TRX_CDSP32 TRX family, 98.0 1.3E-06 2.8E-11 67.4 -0.4 51 186-241 16-84 (103)
168 cd03023 DsbA_Com1_like DsbA fa 98.0 6.5E-05 1.4E-09 61.4 9.7 33 80-112 4-36 (154)
169 cd02954 DIM1 Dim1 family; Dim1 98.0 1E-06 2.3E-11 69.0 -1.1 54 186-244 15-84 (114)
170 PF07912 ERp29_N: ERp29, N-ter 97.9 0.00012 2.6E-09 57.3 10.0 101 62-169 7-121 (126)
171 PRK10877 protein disulfide iso 97.9 4.1E-05 8.8E-10 67.9 8.4 85 79-166 105-230 (232)
172 KOG3414 Component of the U4/U6 97.9 0.00025 5.4E-09 55.6 11.1 93 76-168 18-121 (142)
173 PRK15317 alkyl hydroperoxide r 97.9 5.9E-05 1.3E-09 74.8 9.8 84 81-168 116-199 (517)
174 PRK13191 putative peroxiredoxi 97.9 0.00019 4E-09 63.0 11.9 88 80-167 32-161 (215)
175 cd03002 PDI_a_MPD1_like PDI fa 97.9 1.6E-06 3.6E-11 67.1 -1.2 49 186-239 19-85 (109)
176 PF13848 Thioredoxin_6: Thiore 97.9 0.00022 4.8E-09 60.2 11.8 100 59-165 79-184 (184)
177 PF01216 Calsequestrin: Calseq 97.9 0.0002 4.2E-09 65.7 11.9 106 56-169 33-146 (383)
178 cd02976 NrdH NrdH-redoxin (Nrd 97.9 8.3E-05 1.8E-09 52.6 7.8 67 85-162 2-72 (73)
179 cd02963 TRX_DnaJ TRX domain, D 97.9 2.4E-06 5.2E-11 66.9 -0.4 51 185-240 24-91 (111)
180 PTZ00253 tryparedoxin peroxida 97.9 0.00013 2.8E-09 63.2 10.3 98 63-167 25-164 (199)
181 PRK13189 peroxiredoxin; Provis 97.8 0.00019 4.1E-09 63.2 11.0 88 80-167 34-163 (222)
182 TIGR02183 GRXA Glutaredoxin, G 97.8 0.00011 2.3E-09 54.8 8.0 78 85-169 2-84 (86)
183 cd02948 TRX_NDPK TRX domain, T 97.8 1.7E-06 3.6E-11 66.6 -2.1 54 186-244 18-87 (102)
184 cd03000 PDI_a_TMX3 PDIa family 97.8 3.6E-06 7.7E-11 64.9 -0.3 51 185-240 15-84 (104)
185 PF00085 Thioredoxin: Thioredo 97.8 2.8E-06 6E-11 64.7 -1.1 52 185-241 17-84 (103)
186 cd03065 PDI_b_Calsequestrin_N 97.8 4.2E-06 9.2E-11 66.4 -0.5 56 188-245 29-104 (120)
187 KOG3425 Uncharacterized conser 97.7 0.00023 4.9E-09 55.4 8.5 74 69-144 15-104 (128)
188 cd02956 ybbN ybbN protein fami 97.7 7.7E-06 1.7E-10 61.8 0.4 50 186-240 13-78 (96)
189 cd03001 PDI_a_P5 PDIa family, 97.7 6.8E-06 1.5E-10 62.8 0.0 48 187-239 20-83 (103)
190 cd02992 PDI_a_QSOX PDIa family 97.7 7.3E-06 1.6E-10 64.5 0.1 49 186-239 20-89 (114)
191 PF13462 Thioredoxin_4: Thiore 97.7 0.00053 1.1E-08 56.7 11.1 82 80-165 11-162 (162)
192 KOG1672 ATP binding protein [P 97.7 0.00011 2.3E-09 62.0 6.4 73 80-153 83-156 (211)
193 cd02957 Phd_like Phosducin (Ph 97.6 1.5E-05 3.2E-10 62.5 0.7 53 187-244 26-92 (113)
194 cd02962 TMX2 TMX2 family; comp 97.6 1.2E-05 2.7E-10 66.5 0.0 58 187-249 49-129 (152)
195 cd03020 DsbA_DsbC_DsbG DsbA fa 97.6 0.0003 6.5E-09 60.7 8.6 80 80-163 76-197 (197)
196 cd03419 GRX_GRXh_1_2_like Glut 97.6 0.00012 2.6E-09 53.5 5.1 58 85-146 2-63 (82)
197 TIGR03140 AhpF alkyl hydropero 97.6 0.00059 1.3E-08 67.7 11.1 85 80-168 116-200 (515)
198 TIGR02190 GlrX-dom Glutaredoxi 97.6 0.00011 2.4E-09 53.7 4.4 73 81-163 6-78 (79)
199 cd02989 Phd_like_TxnDC9 Phosdu 97.6 1.6E-05 3.4E-10 62.5 -0.2 51 186-241 23-88 (113)
200 PF02966 DIM1: Mitosis protein 97.5 0.0029 6.2E-08 50.3 12.3 95 69-167 11-117 (133)
201 cd02965 HyaE HyaE family; HyaE 97.5 4E-05 8.6E-10 59.8 1.5 75 159-241 2-96 (111)
202 cd02995 PDI_a_PDI_a'_C PDIa fa 97.5 1.7E-05 3.6E-10 60.6 -0.7 49 186-239 19-84 (104)
203 cd03005 PDI_a_ERp46 PDIa famil 97.5 1.7E-05 3.8E-10 60.3 -1.0 47 188-239 19-84 (102)
204 KOG1731 FAD-dependent sulfhydr 97.4 2E-05 4.2E-10 76.4 -1.2 49 186-239 58-127 (606)
205 PF00462 Glutaredoxin: Glutare 97.4 8.3E-05 1.8E-09 51.2 2.1 54 85-145 1-58 (60)
206 cd02981 PDI_b_family Protein D 97.4 0.0012 2.5E-08 49.9 8.6 81 78-165 14-96 (97)
207 PRK10996 thioredoxin 2; Provis 97.4 4.5E-05 9.7E-10 62.2 0.7 51 186-241 53-119 (139)
208 cd03072 PDI_b'_ERp44 PDIb' fam 97.4 0.0016 3.4E-08 51.0 9.4 88 79-168 14-109 (111)
209 COG3118 Thioredoxin domain-con 97.4 2.5E-05 5.3E-10 70.3 -1.1 70 174-248 32-117 (304)
210 KOG0907 Thioredoxin [Posttrans 97.4 3.3E-05 7.1E-10 59.9 -0.3 48 188-240 24-86 (106)
211 TIGR01126 pdi_dom protein disu 97.4 2.9E-05 6.4E-10 58.9 -0.7 50 185-239 13-80 (102)
212 PHA03050 glutaredoxin; Provisi 97.4 0.00026 5.6E-09 55.1 4.5 62 85-147 15-80 (108)
213 cd02983 P5_C P5 family, C-term 97.4 0.0011 2.4E-08 53.4 8.2 74 97-170 40-118 (130)
214 KOG2603 Oligosaccharyltransfer 97.4 0.0029 6.4E-08 57.3 11.6 111 56-170 39-169 (331)
215 cd03019 DsbA_DsbA DsbA family, 97.4 0.0014 2.9E-08 55.1 9.2 33 80-112 14-46 (178)
216 cd03029 GRX_hybridPRX5 Glutare 97.3 0.00061 1.3E-08 48.6 5.7 69 85-163 3-71 (72)
217 PF07449 HyaE: Hydrogenase-1 e 97.3 0.00089 1.9E-08 51.8 6.7 93 58-158 10-106 (107)
218 PRK09381 trxA thioredoxin; Pro 97.3 4E-05 8.8E-10 59.3 -0.9 52 185-241 21-88 (109)
219 cd02984 TRX_PICOT TRX domain, 97.3 3.7E-05 8.1E-10 58.0 -1.3 51 186-241 15-81 (97)
220 PRK11657 dsbG disulfide isomer 97.3 0.0025 5.4E-08 57.2 10.3 85 80-164 116-249 (251)
221 PRK10954 periplasmic protein d 97.2 0.002 4.3E-08 56.1 9.2 32 81-112 37-71 (207)
222 TIGR02189 GlrX-like_plant Glut 97.2 0.00064 1.4E-08 52.0 5.1 59 85-147 10-72 (99)
223 cd03073 PDI_b'_ERp72_ERp57 PDI 97.2 0.0031 6.6E-08 49.3 8.9 75 92-166 29-110 (111)
224 KOG0908 Thioredoxin-like prote 97.2 5.8E-05 1.2E-09 66.0 -1.0 99 187-290 23-152 (288)
225 TIGR02194 GlrX_NrdH Glutaredox 97.2 0.0023 5.1E-08 45.6 7.5 67 85-161 1-70 (72)
226 cd02997 PDI_a_PDIR PDIa family 97.2 5.4E-05 1.2E-09 57.7 -1.2 48 187-239 19-86 (104)
227 cd02066 GRX_family Glutaredoxi 97.2 0.0013 2.8E-08 46.0 5.9 56 85-147 2-61 (72)
228 cd02950 TxlA TRX-like protein 97.1 0.00011 2.5E-09 60.0 0.0 51 185-240 20-89 (142)
229 KOG0912 Thiol-disulfide isomer 97.1 0.00027 5.9E-09 63.6 2.2 55 187-246 15-92 (375)
230 PTZ00051 thioredoxin; Provisio 97.1 4.8E-05 1E-09 57.6 -2.6 51 186-241 19-84 (98)
231 COG1225 Bcp Peroxiredoxin [Pos 97.0 0.0088 1.9E-07 49.5 10.6 104 56-166 12-155 (157)
232 cd02998 PDI_a_ERp38 PDIa famil 97.0 0.00013 2.8E-09 55.6 -0.5 48 187-239 20-86 (105)
233 cd02972 DsbA_family DsbA famil 97.0 0.0025 5.3E-08 47.2 6.5 59 85-143 1-91 (98)
234 PF05768 DUF836: Glutaredoxin- 96.9 0.0046 9.9E-08 45.4 7.3 77 85-164 2-81 (81)
235 cd02961 PDI_a_family Protein D 96.9 0.00012 2.5E-09 54.9 -1.8 48 187-239 17-82 (101)
236 cd02987 Phd_like_Phd Phosducin 96.9 0.00022 4.7E-09 60.5 -0.4 52 187-243 85-150 (175)
237 PRK10329 glutaredoxin-like pro 96.9 0.0029 6.3E-08 46.5 5.6 73 85-168 3-78 (81)
238 cd02986 DLP Dim1 family, Dim1- 96.9 0.00021 4.5E-09 55.8 -0.6 49 186-239 15-79 (114)
239 PLN00410 U5 snRNP protein, DIM 96.8 0.00022 4.9E-09 58.1 -0.7 49 186-239 24-89 (142)
240 cd02975 PfPDO_like_N Pyrococcu 96.8 0.00034 7.5E-09 54.8 0.2 48 188-240 25-87 (113)
241 TIGR02181 GRX_bact Glutaredoxi 96.7 0.003 6.4E-08 45.8 4.8 55 85-146 1-59 (79)
242 TIGR01068 thioredoxin thioredo 96.7 0.00076 1.7E-08 50.7 1.5 48 187-239 16-79 (101)
243 cd02988 Phd_like_VIAF Phosduci 96.7 0.0003 6.6E-09 60.5 -1.0 59 187-250 104-175 (192)
244 cd02953 DsbDgamma DsbD gamma f 96.7 0.00025 5.4E-09 54.4 -1.5 48 185-237 11-81 (104)
245 PHA02125 thioredoxin-like prot 96.6 0.00026 5.6E-09 51.2 -1.4 39 190-233 3-51 (75)
246 cd02949 TRX_NTR TRX domain, no 96.6 0.00051 1.1E-08 52.1 -0.2 51 186-241 14-80 (97)
247 PF11009 DUF2847: Protein of u 96.5 0.041 8.9E-07 42.3 10.1 82 78-159 16-104 (105)
248 COG0695 GrxC Glutaredoxin and 96.5 0.0079 1.7E-07 44.1 5.9 57 85-145 3-62 (80)
249 cd02959 ERp19 Endoplasmic reti 96.5 0.00075 1.6E-08 53.3 0.3 51 185-240 19-89 (117)
250 cd03418 GRX_GRXb_1_3_like Glut 96.5 0.012 2.7E-07 41.9 6.6 55 85-146 2-61 (75)
251 PRK15317 alkyl hydroperoxide r 96.5 0.024 5.2E-07 56.3 10.9 140 77-234 14-175 (517)
252 cd03027 GRX_DEP Glutaredoxin ( 96.5 0.013 2.8E-07 41.8 6.6 54 85-145 3-60 (73)
253 KOG3170 Conserved phosducin-li 96.3 0.029 6.3E-07 47.8 8.5 104 56-167 90-201 (240)
254 PF13848 Thioredoxin_6: Thiore 96.2 0.041 8.8E-07 46.2 9.3 70 98-171 7-79 (184)
255 PF13743 Thioredoxin_5: Thiore 96.0 0.024 5.2E-07 48.0 7.2 30 87-116 2-31 (176)
256 TIGR00411 redox_disulf_1 small 96.0 0.0018 3.9E-08 47.0 -0.1 40 194-239 7-62 (82)
257 PTZ00062 glutaredoxin; Provisi 95.9 0.0016 3.4E-08 56.5 -0.8 57 189-250 21-84 (204)
258 cd03013 PRX5_like Peroxiredoxi 95.9 0.0095 2.1E-07 49.4 3.9 64 64-133 18-88 (155)
259 cd02947 TRX_family TRX family; 95.7 0.0025 5.4E-08 46.5 -0.2 49 186-239 11-74 (93)
260 TIGR01295 PedC_BrcD bacterioci 95.7 0.0015 3.3E-08 51.9 -1.5 52 186-242 24-104 (122)
261 cd02982 PDI_b'_family Protein 95.7 0.0022 4.8E-08 48.7 -0.6 47 186-237 13-77 (103)
262 PRK10638 glutaredoxin 3; Provi 95.7 0.011 2.3E-07 43.4 3.1 55 85-146 4-62 (83)
263 TIGR00412 redox_disulf_2 small 95.7 0.0029 6.2E-08 45.8 -0.1 43 190-239 3-58 (76)
264 TIGR03140 AhpF alkyl hydropero 95.6 0.11 2.5E-06 51.4 10.9 138 81-234 18-176 (515)
265 PF00837 T4_deiodinase: Iodoth 95.5 0.14 3E-06 45.2 9.8 55 55-114 80-135 (237)
266 cd02951 SoxW SoxW family; SoxW 95.5 0.0026 5.6E-08 50.5 -0.9 48 186-238 15-94 (125)
267 cd03067 PDI_b_PDIR_N PDIb fami 95.3 0.088 1.9E-06 39.9 6.9 86 79-165 17-110 (112)
268 cd03028 GRX_PICOT_like Glutare 95.3 0.0084 1.8E-07 44.9 1.4 51 91-145 21-72 (90)
269 cd03066 PDI_b_Calsequestrin_mi 95.2 0.24 5.3E-06 37.7 9.4 80 80-166 18-100 (102)
270 TIGR00365 monothiol glutaredox 95.0 0.0091 2E-07 45.4 0.9 51 91-145 25-76 (97)
271 cd03069 PDI_b_ERp57 PDIb famil 94.9 0.31 6.7E-06 37.3 9.1 80 79-166 16-103 (104)
272 PRK10824 glutaredoxin-4; Provi 94.6 0.068 1.5E-06 42.0 4.8 52 91-146 28-80 (115)
273 KOG3171 Conserved phosducin-li 94.4 0.14 3.1E-06 44.1 6.7 85 80-166 158-250 (273)
274 COG1651 DsbG Protein-disulfide 94.3 0.34 7.4E-06 42.9 9.5 38 126-167 206-243 (244)
275 KOG1752 Glutaredoxin and relat 94.0 0.13 2.8E-06 39.6 5.1 57 85-146 16-77 (104)
276 PRK00293 dipZ thiol:disulfide 94.0 0.024 5.2E-07 57.0 1.4 49 186-239 475-546 (571)
277 PRK12759 bifunctional gluaredo 93.7 0.065 1.4E-06 51.6 3.7 54 85-145 4-69 (410)
278 cd02973 TRX_GRX_like Thioredox 93.6 0.019 4.2E-07 39.9 -0.1 37 194-234 7-58 (67)
279 TIGR02738 TrbB type-F conjugat 93.4 0.054 1.2E-06 44.8 2.3 32 183-219 48-79 (153)
280 COG1999 Uncharacterized protei 92.8 0.84 1.8E-05 39.7 9.0 79 57-142 50-137 (207)
281 PF01323 DSBA: DSBA-like thior 92.7 1.1 2.4E-05 37.8 9.4 36 126-164 158-193 (193)
282 cd02952 TRP14_like Human TRX-r 91.3 0.036 7.9E-07 43.8 -1.2 40 198-239 38-101 (119)
283 TIGR02740 TraF-like TraF-like 90.8 0.063 1.4E-06 48.7 -0.3 46 187-237 168-238 (271)
284 PRK09301 circadian clock prote 90.6 1.1 2.4E-05 34.3 6.3 76 80-155 4-80 (103)
285 TIGR02654 circ_KaiB circadian 90.6 1.2 2.6E-05 33.0 6.3 74 82-155 3-77 (87)
286 COG0386 BtuE Glutathione perox 89.5 5.1 0.00011 33.0 9.7 49 56-112 7-55 (162)
287 cd03060 GST_N_Omega_like GST_N 89.4 0.99 2.2E-05 31.6 5.1 53 86-141 2-54 (71)
288 cd03051 GST_N_GTT2_like GST_N 89.4 0.79 1.7E-05 31.9 4.6 58 86-144 2-60 (74)
289 cd03026 AhpF_NTD_C TRX-GRX-lik 89.2 0.21 4.4E-06 37.3 1.4 41 193-239 19-74 (89)
290 PF13417 GST_N_3: Glutathione 89.1 2.8 6.1E-05 29.6 7.3 72 87-168 1-72 (75)
291 cd02978 KaiB_like KaiB-like fa 88.8 2.3 5E-05 30.4 6.4 66 84-149 3-69 (72)
292 cd03040 GST_N_mPGES2 GST_N fam 88.7 5.5 0.00012 28.0 8.7 75 85-168 2-77 (77)
293 COG3019 Predicted metal-bindin 88.6 3.1 6.7E-05 33.6 7.7 74 84-167 27-104 (149)
294 COG1331 Highly conserved prote 87.9 1.8 3.9E-05 43.8 7.3 73 69-147 36-122 (667)
295 cd02974 AhpF_NTD_N Alkyl hydro 87.8 8.9 0.00019 28.8 9.5 74 80-166 18-93 (94)
296 KOG2792 Putative cytochrome C 87.0 9.7 0.00021 34.1 10.6 102 59-168 124-276 (280)
297 cd02967 mauD Methylamine utili 86.2 0.45 9.7E-06 36.5 1.8 29 186-219 22-50 (114)
298 COG3634 AhpF Alkyl hydroperoxi 85.7 3.2 6.8E-05 39.0 7.1 84 78-165 113-196 (520)
299 cd03011 TlpA_like_ScsD_MtbDsbE 85.5 0.19 4E-06 39.3 -0.8 28 186-218 21-48 (123)
300 PF09673 TrbC_Ftype: Type-F co 85.2 3.8 8.2E-05 31.9 6.5 42 98-144 36-80 (113)
301 PF01216 Calsequestrin: Calseq 85.1 23 0.00049 33.3 12.3 102 56-170 145-250 (383)
302 PF02630 SCO1-SenC: SCO1/SenC; 84.0 1.1 2.4E-05 37.7 3.3 49 56-111 34-83 (174)
303 PRK14018 trifunctional thiored 83.5 0.69 1.5E-05 45.9 2.0 29 186-219 57-85 (521)
304 cd03068 PDI_b_ERp72 PDIb famil 83.0 19 0.00041 27.6 10.0 82 78-166 16-107 (107)
305 cd03041 GST_N_2GST_N GST_N fam 83.0 3.4 7.3E-05 29.4 5.1 74 85-166 2-76 (77)
306 cd02955 SSP411 TRX domain, SSP 82.8 0.44 9.4E-06 37.9 0.3 52 185-239 15-92 (124)
307 KOG0914 Thioredoxin-like prote 82.5 0.17 3.8E-06 43.8 -2.2 61 185-250 144-227 (265)
308 TIGR02742 TrbC_Ftype type-F co 82.5 2.9 6.2E-05 33.6 4.9 43 124-166 60-114 (130)
309 KOG2507 Ubiquitin regulatory p 81.9 9 0.0002 36.6 8.5 89 79-167 16-111 (506)
310 cd03031 GRX_GRX_like Glutaredo 81.8 4.1 8.9E-05 33.4 5.7 54 85-145 2-69 (147)
311 cd02964 TryX_like_family Trypa 81.7 0.91 2E-05 36.1 1.8 31 186-221 18-48 (132)
312 KOG0913 Thiol-disulfide isomer 81.6 0.088 1.9E-06 46.0 -4.4 60 185-249 39-115 (248)
313 PF00255 GSHPx: Glutathione pe 81.4 1.7 3.8E-05 33.6 3.2 47 58-112 5-51 (108)
314 COG4545 Glutaredoxin-related p 79.9 0.91 2E-05 32.5 1.1 63 86-148 5-77 (85)
315 PHA03075 glutaredoxin-like pro 79.5 2.2 4.7E-05 33.3 3.0 30 82-111 2-31 (123)
316 cd00570 GST_N_family Glutathio 79.1 3.6 7.8E-05 27.5 4.0 53 86-141 2-55 (71)
317 cd03059 GST_N_SspA GST_N famil 78.7 3.5 7.7E-05 28.5 3.9 71 86-166 2-72 (73)
318 PF06053 DUF929: Domain of unk 78.2 9.3 0.0002 34.2 7.1 57 78-142 55-112 (249)
319 cd03037 GST_N_GRX2 GST_N famil 78.0 6.7 0.00015 27.1 5.2 68 86-164 2-70 (71)
320 cd02977 ArsC_family Arsenate R 77.9 2.1 4.5E-05 32.6 2.7 81 85-168 1-88 (105)
321 cd03045 GST_N_Delta_Epsilon GS 76.4 2.3 5E-05 29.7 2.4 54 86-140 2-56 (74)
322 cd02990 UAS_FAF1 UAS family, F 76.3 39 0.00085 27.3 11.1 98 69-168 6-134 (136)
323 cd03009 TryX_like_TryX_NRX Try 76.0 1.5 3.3E-05 34.5 1.5 30 186-220 19-48 (131)
324 COG2761 FrnE Predicted dithiol 75.6 6.1 0.00013 34.7 5.2 42 126-170 175-216 (225)
325 PF13778 DUF4174: Domain of un 73.8 41 0.00088 26.3 9.2 75 92-166 21-111 (118)
326 cd03035 ArsC_Yffb Arsenate Red 72.7 3.5 7.5E-05 31.7 2.7 22 85-106 1-22 (105)
327 cd03008 TryX_like_RdCVF Trypar 72.6 1.6 3.4E-05 35.8 0.7 30 186-220 26-55 (146)
328 PLN02919 haloacid dehalogenase 71.3 2.3 4.9E-05 46.1 1.8 29 186-219 421-449 (1057)
329 PRK11509 hydrogenase-1 operon 70.8 1.7 3.7E-05 34.9 0.6 25 221-245 84-108 (132)
330 cd03036 ArsC_like Arsenate Red 70.4 4.2 9.1E-05 31.4 2.7 21 86-106 2-22 (111)
331 COG3531 Predicted protein-disu 70.1 6.8 0.00015 33.6 4.0 43 125-167 164-209 (212)
332 PRK01655 spxA transcriptional 69.3 5.4 0.00012 31.9 3.2 22 85-106 2-23 (131)
333 PF09822 ABC_transp_aux: ABC-t 69.2 85 0.0019 28.1 12.2 101 69-169 12-144 (271)
334 COG0526 TrxA Thiol-disulfide i 67.8 2.5 5.5E-05 31.1 0.9 28 188-220 35-62 (127)
335 PF07689 KaiB: KaiB domain; I 66.5 3.5 7.6E-05 30.2 1.4 54 88-141 3-57 (82)
336 cd03024 DsbA_FrnE DsbA family, 66.0 8 0.00017 32.7 3.8 36 125-163 165-200 (201)
337 cd03010 TlpA_like_DsbE TlpA-li 65.9 2.6 5.7E-05 32.9 0.7 28 187-219 27-54 (127)
338 PRK13730 conjugal transfer pil 65.1 12 0.00025 32.4 4.5 43 123-165 150-192 (212)
339 TIGR01617 arsC_related transcr 63.9 6.5 0.00014 30.6 2.6 20 86-105 2-21 (117)
340 cd03055 GST_N_Omega GST_N fami 63.8 17 0.00037 26.5 4.8 54 85-141 19-72 (89)
341 KOG0855 Alkyl hydroperoxide re 62.8 4.7 0.0001 33.7 1.6 67 56-128 71-142 (211)
342 PF13905 Thioredoxin_8: Thiore 62.2 3.1 6.8E-05 30.6 0.5 28 188-220 4-31 (95)
343 KOG1651 Glutathione peroxidase 60.7 15 0.00033 30.6 4.3 99 56-169 16-127 (171)
344 cd03032 ArsC_Spx Arsenate Redu 59.5 11 0.00024 29.3 3.2 22 85-106 2-23 (115)
345 TIGR00385 dsbE periplasmic pro 59.5 4.3 9.3E-05 33.9 0.9 27 186-217 64-90 (173)
346 PRK13728 conjugal transfer pro 59.1 5.4 0.00012 33.9 1.4 26 189-219 73-98 (181)
347 PRK12559 transcriptional regul 59.0 11 0.00024 30.2 3.2 22 85-106 2-23 (131)
348 cd02966 TlpA_like_family TlpA- 58.6 5.5 0.00012 29.5 1.3 29 186-219 20-48 (116)
349 PRK15412 thiol:disulfide inter 58.3 4.4 9.5E-05 34.3 0.8 25 188-217 71-95 (185)
350 cd03056 GST_N_4 GST_N family, 58.1 8.2 0.00018 26.5 2.1 53 86-141 2-57 (73)
351 cd03022 DsbA_HCCA_Iso DsbA fam 57.7 11 0.00023 31.6 3.1 35 125-163 157-191 (192)
352 PF13098 Thioredoxin_2: Thiore 53.6 5.1 0.00011 30.4 0.4 23 186-213 6-28 (112)
353 PF09695 YtfJ_HI0045: Bacteria 51.2 1.4E+02 0.0031 24.8 9.5 107 56-164 14-155 (160)
354 KOG1422 Intracellular Cl- chan 50.3 87 0.0019 27.3 7.3 69 92-170 20-88 (221)
355 COG4232 Thiol:disulfide interc 50.2 2.6 5.6E-05 42.0 -2.2 48 187-239 476-545 (569)
356 PF08806 Sep15_SelM: Sep15/Sel 49.5 29 0.00063 25.1 3.8 33 135-167 41-76 (78)
357 cd03012 TlpA_like_DipZ_like Tl 49.3 10 0.00022 29.6 1.5 31 187-222 25-55 (126)
358 PRK13344 spxA transcriptional 48.7 20 0.00043 28.7 3.1 21 85-105 2-22 (132)
359 cd03025 DsbA_FrnE_like DsbA fa 47.4 33 0.00071 28.7 4.5 28 85-112 3-30 (193)
360 PTZ00056 glutathione peroxidas 46.7 7.4 0.00016 33.5 0.3 39 187-230 41-79 (199)
361 PLN02412 probable glutathione 45.9 8.5 0.00018 32.0 0.6 38 188-230 32-69 (167)
362 PF04592 SelP_N: Selenoprotein 43.4 42 0.00092 29.7 4.5 41 79-119 24-69 (238)
363 TIGR02540 gpx7 putative glutat 43.1 8.9 0.00019 31.1 0.3 38 188-230 25-62 (153)
364 PRK03147 thiol-disulfide oxido 42.6 14 0.0003 30.4 1.4 29 188-221 64-92 (173)
365 PLN02399 phospholipid hydroper 42.3 8.8 0.00019 34.1 0.1 39 187-230 101-139 (236)
366 TIGR02661 MauD methylamine deh 40.7 15 0.00033 31.1 1.4 25 188-217 77-101 (189)
367 cd03023 DsbA_Com1_like DsbA fa 38.3 7 0.00015 31.1 -1.1 27 188-219 8-34 (154)
368 PF08534 Redoxin: Redoxin; In 35.3 16 0.00034 29.1 0.6 29 188-221 31-60 (146)
369 cd03033 ArsC_15kD Arsenate Red 35.1 47 0.001 25.8 3.2 22 85-106 2-23 (113)
370 PF04134 DUF393: Protein of un 34.7 54 0.0012 24.9 3.6 51 88-142 2-56 (114)
371 cd00340 GSH_Peroxidase Glutath 34.7 24 0.00052 28.6 1.6 32 187-224 24-55 (152)
372 cd03058 GST_N_Tau GST_N family 33.9 1.5E+02 0.0033 20.2 6.6 71 86-166 2-73 (74)
373 PF13728 TraF: F plasmid trans 33.9 12 0.00026 32.7 -0.4 47 188-239 123-194 (215)
374 cd03049 GST_N_3 GST_N family, 33.9 80 0.0017 21.6 4.1 56 86-144 2-59 (73)
375 COG5309 Exo-beta-1,3-glucanase 33.8 51 0.0011 29.9 3.5 84 80-168 73-163 (305)
376 cd03025 DsbA_FrnE_like DsbA fa 33.7 31 0.00067 28.8 2.2 22 125-146 159-180 (193)
377 cd03053 GST_N_Phi GST_N family 33.0 45 0.00098 23.0 2.6 73 85-165 2-75 (76)
378 PRK10606 btuE putative glutath 31.4 16 0.00035 31.1 0.0 39 187-231 27-65 (183)
379 cd03052 GST_N_GDAP1 GST_N fami 30.8 39 0.00084 23.6 2.0 55 86-144 2-59 (73)
380 COG0450 AhpC Peroxiredoxin [Po 29.8 3.6E+02 0.0079 23.2 9.4 95 66-167 25-161 (194)
381 cd03061 GST_N_CLIC GST_N famil 29.3 2.4E+02 0.0052 20.9 6.2 69 90-168 19-87 (91)
382 PF14060 DUF4252: Domain of un 28.2 2.9E+02 0.0062 22.2 7.1 72 91-164 77-154 (155)
383 KOG1364 Predicted ubiquitin re 28.2 80 0.0017 29.6 3.9 53 116-168 135-190 (356)
384 KOG1672 ATP binding protein [P 28.2 10 0.00022 32.5 -1.6 63 188-255 87-165 (211)
385 COG0821 gcpE 1-hydroxy-2-methy 27.7 69 0.0015 30.0 3.4 76 93-168 264-352 (361)
386 PTZ00256 glutathione peroxidas 27.2 32 0.00069 28.9 1.2 33 194-230 49-81 (183)
387 PF07449 HyaE: Hydrogenase-1 e 27.1 16 0.00036 28.2 -0.6 29 220-248 74-102 (107)
388 cd03038 GST_N_etherase_LigE GS 26.5 91 0.002 22.1 3.4 68 90-166 13-82 (84)
389 COG0295 Cdd Cytidine deaminase 23.6 1.2E+02 0.0027 24.4 3.8 10 93-102 88-97 (134)
390 PF13623 SurA_N_2: SurA N-term 23.6 2.1E+02 0.0045 23.3 5.2 18 56-73 38-55 (145)
391 PF02114 Phosducin: Phosducin; 23.1 21 0.00045 32.3 -0.8 49 188-241 149-211 (265)
392 cd03021 DsbA_GSTK DsbA family, 22.9 90 0.0019 26.7 3.2 38 126-163 170-208 (209)
393 COG1393 ArsC Arsenate reductas 22.6 1E+02 0.0022 24.2 3.1 22 85-106 3-24 (117)
394 cd03048 GST_N_Ure2p_like GST_N 22.4 2.1E+02 0.0045 19.9 4.6 75 87-168 3-80 (81)
395 PF04551 GcpE: GcpE protein; 22.4 89 0.0019 29.5 3.2 74 93-166 271-358 (359)
396 PF07700 HNOB: Heme NO binding 22.0 1.7E+02 0.0036 24.3 4.5 41 81-121 127-168 (171)
397 PF05364 SecIII_SopE_N: Salmon 21.8 25 0.00055 24.4 -0.4 20 297-316 46-66 (74)
398 COG0278 Glutaredoxin-related p 20.9 61 0.0013 24.7 1.5 51 90-145 27-80 (105)
399 cd02970 PRX_like2 Peroxiredoxi 20.4 70 0.0015 25.1 1.9 30 188-221 26-55 (149)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.2e-29 Score=235.84 Aligned_cols=108 Identities=27% Similarity=0.516 Sum_probs=96.7
Q ss_pred CCcceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC---CcEEEEEeCCCChhhHhhcC
Q 021221 56 QDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS---IPHFAIEESAIRPSILSKYG 132 (316)
Q Consensus 56 ~~~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~---~~~v~~~~~~~~~~l~~~~~ 132 (316)
...|.+++.++ |++. .+.+..++|.||||||+||++++|.|++.++.... .+.++.+||+++.++|++|+
T Consensus 24 ~~~Vl~Lt~dn--f~~~-----i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~ 96 (493)
T KOG0190|consen 24 EEDVLVLTKDN--FKET-----INGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYE 96 (493)
T ss_pred ccceEEEeccc--HHHH-----hccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhc
Confidence 45577777777 8877 46789999999999999999999999999998765 57788889999999999999
Q ss_pred CCccceEEEE-eCceeEEEeCCCCHHHHHHHHHHhhCCC
Q 021221 133 VHGFPTLFLL-NSSMRVRYHGSRTLDSLVAFYSDVTASL 170 (316)
Q Consensus 133 I~~~Pti~l~-~g~~~~~~~G~~~~~~l~~fi~~~~~~~ 170 (316)
|+||||+.+| ||+....|.|+|+.+.|+.|+.+..|+.
T Consensus 97 v~gyPTlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa 135 (493)
T KOG0190|consen 97 VRGYPTLKIFRNGRSAQDYNGPREADGIVKWLKKQSGPA 135 (493)
T ss_pred CCCCCeEEEEecCCcceeccCcccHHHHHHHHHhccCCC
Confidence 9999999999 8888899999999999999999988744
No 2
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=99.92 E-value=2.1e-25 Score=197.51 Aligned_cols=280 Identities=41% Similarity=0.616 Sum_probs=210.6
Q ss_pred cCCCCCCchhHHHHHHhhhcCCCccccC-CCCCcceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHH
Q 021221 26 VRFPLCPTESVTDSIFRFQDSFCPISCN-DFQDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFS 104 (316)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~ 104 (316)
...+.|..+...+.+......+ .... ....++...+++- ++...+.+..++..++-+.||+.|||..+..+|.++
T Consensus 24 v~~~vc~~esa~~~~~l~~e~~--~~lh~~~~~~~~e~~~~~--l~~l~~~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd 99 (319)
T KOG2640|consen 24 VDLPVCGVESALFSIRLLRECP--RSLHRPSFEEAIEVDGDC--LQVLLDAIHGNKNDYVSLLFYASWCPFSRAVRPEFD 99 (319)
T ss_pred eccceeeeeehhhhhhhhhhcc--ccccCCCCchhhhcccch--hhHHHHhhccccCCcccccchhcccCcccccCcccc
Confidence 5666888887766655433321 1111 1111123334444 777767777778899999999999999999999999
Q ss_pred HHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEEeCceeEEEeCCCCHHHHHHHHHHhhCCC---CCCCccc---c
Q 021221 105 VLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSDVTASL---DKISPDK---V 178 (316)
Q Consensus 105 ~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~~g~~~~~~~G~~~~~~l~~fi~~~~~~~---~~~~~~~---~ 178 (316)
-....|+.+.++++++....+.+.++||+.+.|++.+.+.+-..+|.|.++.++|++|+.+.++-. +..+... .
T Consensus 100 ~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~~~~~~~~r~l~sLv~fy~~i~~~~v~ie~~d~~~~~~~ 179 (319)
T KOG2640|consen 100 VRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTCPASYRGERDLASLVNFYTEITPMSVLIEILDCTSCLEP 179 (319)
T ss_pred hhhhhccccccccHHHHhhcccchhccccccCCcceeeccccchhhcccccHHHHHHHHHhhccchhcccccCcccceee
Confidence 999999988999988888889999999999999999999899999999999999999999999722 1111111 0
Q ss_pred cccCcc-ccCCCccccccCCcccC--ChhhhhchHHHHHHHHHHHHHHhHHhhhhhHhHhhccceehhhhcccccccchh
Q 021221 179 GKASNH-EKHNNTEEESCPFSWAR--SPENLLQQETYLALATAFVLLRLVYIFLPTLLIFAQFTWRRLIRNLKLGSLLEH 255 (316)
Q Consensus 179 ~~~~~~-~~~~~v~f~~~~~pw~~--~~~~~l~~~~~~~lA~~f~~~~~~i~~~Ptl~~~~~~~~~~~~~~~~~~~~~~~ 255 (316)
+.-... +..-+......++||-+ ...++++++.|..+|..|..++..+..||+.+.+.+-.|..+.++++++.+.+.
T Consensus 180 ~ry~~~~~~t~l~~p~~~~~~~~r~~~~~e~~~~~~~~slat~fv~l~~~~li~P~a~~~v~~~~~~~~~~l~l~~l~e~ 259 (319)
T KOG2640|consen 180 VRYVPEGGPTILLAPDGNLFTWARPASKFELLRQETYSSLATVFVSLKNNILIFPIAVSRVKFTWADVAPNLSLGILVET 259 (319)
T ss_pred eEeccccCcccccCcCCCcchhcccccccchhhhhhHHHHHHHHHHHHhhhhhccchhhhhheeHHhhcccccccccchh
Confidence 110011 11111222245568876 567788999999999999999999999999999999999999999999988874
Q ss_pred hhHHHHHHHHHH-HHhc--ccc--cCCccccchhhhhhhcccccceeecCCCCCCCcccccc
Q 021221 256 PRTYLNRAIQLF-KTLN--EPC--KRSNLQEGALNARAWASKSLATVSIGDASSSRGACVNE 312 (316)
Q Consensus 256 ~~~~~~r~~~~~-~~l~--~~~--~~~~~~~g~~~~~awa~~~~~~~~~~~~~~~~~~~~~~ 312 (316)
. .+|..... .++. ++| +++++|++++|+++||++|||+||||++||+.+++..+
T Consensus 260 ~---f~~~~~~v~~~~~~i~l~l~~~~~lq~~~~na~~w~~~~la~~si~~~S~~~~~~~~~ 318 (319)
T KOG2640|consen 260 S---FERKLHMVDTYLLWIELCLTKTRNLQWFAKNARAWASSSLASVSIRTESSSSQIPSQS 318 (319)
T ss_pred h---hhhhhhhhhhhhhhhhhHHHHhHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCccc
Confidence 3 45543333 1111 344 77999999999999999999999999999987776543
No 3
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=5.6e-24 Score=202.17 Aligned_cols=158 Identities=22% Similarity=0.338 Sum_probs=136.4
Q ss_pred hccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEE-eCceeEEEeCCCC
Q 021221 77 HKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRT 155 (316)
Q Consensus 77 ~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g~~~~~~~G~~~ 155 (316)
....+++++|+||+|||++|+++.|.|+++++.+.++..++.+||+++.++|++|+|+++||+.+| .|..+..|.|.++
T Consensus 43 ~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~~~ 122 (383)
T KOG0191|consen 43 LLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGPRN 122 (383)
T ss_pred hhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceeeccCccc
Confidence 356889999999999999999999999999999999889999999999999999999999999999 5667899999999
Q ss_pred HHHHHHHHHHhhCCCCCCCccc-cc----cc-----CccccCCCccccccCCcccCChhhhhchHHHHHHHHHH------
Q 021221 156 LDSLVAFYSDVTASLDKISPDK-VG----KA-----SNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAF------ 219 (316)
Q Consensus 156 ~~~l~~fi~~~~~~~~~~~~~~-~~----~~-----~~~~~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f------ 219 (316)
.+.+.+|+.+.+...+...... +. .. ...+..++|.| |+ |||+||+.+ .|.|..+|..+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f-~a--Pwc~~ck~l--~~~~~~~a~~~~~~~~v 197 (383)
T KOG0191|consen 123 AESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEF-YA--PWCGHCKKL--APEWEKLAKLLKSKENV 197 (383)
T ss_pred HHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEE-ec--cccHHhhhc--ChHHHHHHHHhccCcce
Confidence 9999999999988664432222 11 11 12355689999 99 999999999 99999999866
Q ss_pred ------------HHHHhHHhhhhhHhHhhccc
Q 021221 220 ------------VLLRLVYIFLPTLLIFAQFT 239 (316)
Q Consensus 220 ------------~~~~~~i~~~Ptl~~~~~~~ 239 (316)
++.++++.+|||+++|++|.
T Consensus 198 ~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~ 229 (383)
T KOG0191|consen 198 ELGKIDATVHKSLASRLEVRGYPTLKLFPPGE 229 (383)
T ss_pred EEEeeccchHHHHhhhhcccCCceEEEecCCC
Confidence 35899999999999999998
No 4
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.87 E-value=2.4e-21 Score=152.42 Aligned_cols=101 Identities=20% Similarity=0.244 Sum_probs=87.1
Q ss_pred EEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhH-hhcCCCccceE
Q 021221 61 VIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSIL-SKYGVHGFPTL 139 (316)
Q Consensus 61 ~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~-~~~~I~~~Pti 139 (316)
+++.++.||+++.. +.+.+++++|+||||||++|+.+.|.|+++++.+++...++.+||+.+.++| ++|+|+++||+
T Consensus 11 v~~l~~~~f~~~~~--v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl 88 (113)
T cd03006 11 VLDFYKGQLDYAEE--LRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVI 88 (113)
T ss_pred eEEechhhhHHHHh--cccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEE
Confidence 44444445777521 2468899999999999999999999999999999887778888999999999 58999999999
Q ss_pred EEE-eCceeEEEeCCCCHHHHHHHH
Q 021221 140 FLL-NSSMRVRYHGSRTLDSLVAFY 163 (316)
Q Consensus 140 ~l~-~g~~~~~~~G~~~~~~l~~fi 163 (316)
++| +|+...+|.|.++.+.|..|+
T Consensus 89 ~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 89 HLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred EEEECCccceEEeCCCCHHHHHhhC
Confidence 999 888899999999999999874
No 5
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=7.4e-22 Score=158.95 Aligned_cols=95 Identities=21% Similarity=0.317 Sum_probs=89.5
Q ss_pred hHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEE-eCceeEEEeC
Q 021221 74 NMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHG 152 (316)
Q Consensus 74 ~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g~~~~~~~G 152 (316)
+..+.+++.||+|+|||+||++|+.+.|.++++++.|.+...++.+|.|++.+++.+|+|.++||+++| ||+++.++.|
T Consensus 54 ~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe~~d~~vG 133 (150)
T KOG0910|consen 54 DDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFKNGEKVDRFVG 133 (150)
T ss_pred HHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEECCEEeeeecc
Confidence 334678999999999999999999999999999999999999999999999999999999999999999 8888899999
Q ss_pred CCCHHHHHHHHHHhhC
Q 021221 153 SRTLDSLVAFYSDVTA 168 (316)
Q Consensus 153 ~~~~~~l~~fi~~~~~ 168 (316)
..+.+.|.++|++.++
T Consensus 134 ~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 134 AVPKEQLRSLIKKFLK 149 (150)
T ss_pred cCCHHHHHHHHHHHhc
Confidence 9999999999998764
No 6
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.85 E-value=5.7e-21 Score=147.42 Aligned_cols=92 Identities=62% Similarity=1.150 Sum_probs=79.9
Q ss_pred HHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEE-eCceeEE
Q 021221 71 MALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVR 149 (316)
Q Consensus 71 ~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g~~~~~ 149 (316)
.+.+.+...++++++|+|||+||++|+.+.|.|+++++.++++.++.++..+.+++++++|+|+++||+++| +| .+.+
T Consensus 8 ~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~ 86 (100)
T cd02999 8 IALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVR 86 (100)
T ss_pred HHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeE
Confidence 334445567899999999999999999999999999999998777776443378999999999999999999 66 8899
Q ss_pred EeCCCCHHHHHHHH
Q 021221 150 YHGSRTLDSLVAFY 163 (316)
Q Consensus 150 ~~G~~~~~~l~~fi 163 (316)
|.|.++.++|.+||
T Consensus 87 ~~G~~~~~~l~~f~ 100 (100)
T cd02999 87 YNGTRTLDSLAAFY 100 (100)
T ss_pred ecCCCCHHHHHhhC
Confidence 99999999999985
No 7
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.85 E-value=2.2e-20 Score=143.85 Aligned_cols=102 Identities=30% Similarity=0.572 Sum_probs=91.1
Q ss_pred ceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccce
Q 021221 59 VGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPT 138 (316)
Q Consensus 59 v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pt 138 (316)
|..++.++ |++. +.+++++++|+||++||++|+.+.|.|+++++.+++.+.+..+|++++++++++|+|+++||
T Consensus 1 v~~lt~~~--f~~~----i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt 74 (103)
T PF00085_consen 1 VIVLTDEN--FEKF----INESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPT 74 (103)
T ss_dssp SEEESTTT--HHHH----HTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSE
T ss_pred CEECCHHH--HHHH----HHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCE
Confidence 34566667 6666 45568999999999999999999999999999999766777778999999999999999999
Q ss_pred EEEE-eCceeEEEeCCCCHHHHHHHHHHh
Q 021221 139 LFLL-NSSMRVRYHGSRTLDSLVAFYSDV 166 (316)
Q Consensus 139 i~l~-~g~~~~~~~G~~~~~~l~~fi~~~ 166 (316)
+++| +|+...+|.|.++.++|.+||++|
T Consensus 75 ~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 75 IIFFKNGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EEEEETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred EEEEECCcEEEEEECCCCHHHHHHHHHcC
Confidence 9999 889999999999999999999986
No 8
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.85 E-value=7e-21 Score=147.01 Aligned_cols=96 Identities=21% Similarity=0.413 Sum_probs=85.1
Q ss_pred eEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceE
Q 021221 60 GVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTL 139 (316)
Q Consensus 60 ~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti 139 (316)
..++.++ |++. + +++++++|+|||+||++|+.+.|.|+++++.+++...+..+||+++++++++|+|+++||+
T Consensus 4 ~~l~~~~--f~~~----v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 76 (101)
T cd03003 4 VTLDRGD--FDAA----V-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSL 76 (101)
T ss_pred EEcCHhh--HHHH----h-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEE
Confidence 3444444 7766 3 4569999999999999999999999999999998778888899999999999999999999
Q ss_pred EEE-eCceeEEEeCCCCHHHHHHH
Q 021221 140 FLL-NSSMRVRYHGSRTLDSLVAF 162 (316)
Q Consensus 140 ~l~-~g~~~~~~~G~~~~~~l~~f 162 (316)
++| +|+.+.+|.|.++.++|.+|
T Consensus 77 ~~~~~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 77 YVFPSGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred EEEcCCCCcccCCCCCCHHHHHhh
Confidence 999 88888999999999999887
No 9
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.84 E-value=1.1e-20 Score=146.54 Aligned_cols=98 Identities=19% Similarity=0.302 Sum_probs=85.3
Q ss_pred eEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceE
Q 021221 60 GVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTL 139 (316)
Q Consensus 60 ~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti 139 (316)
..++.++ |++. +.+++++++|+|||+||++|+.+.|.|+++++.+.+...++..|++++++++++|+|+++||+
T Consensus 4 ~~l~~~~--f~~~----i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~ 77 (104)
T cd03004 4 ITLTPED--FPEL----VLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTI 77 (104)
T ss_pred eEcCHHH--HHHH----HhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEE
Confidence 3344444 6655 556778999999999999999999999999999988788888899999999999999999999
Q ss_pred EEE-eC-ceeEEEeCCCC-HHHHHHHH
Q 021221 140 FLL-NS-SMRVRYHGSRT-LDSLVAFY 163 (316)
Q Consensus 140 ~l~-~g-~~~~~~~G~~~-~~~l~~fi 163 (316)
++| +| +.+.+|.|..+ .++|.+||
T Consensus 78 ~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 78 RLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 999 66 88899999987 99999885
No 10
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.82 E-value=1e-19 Score=142.21 Aligned_cols=98 Identities=27% Similarity=0.516 Sum_probs=82.5
Q ss_pred ceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC------CcEEEEEeCCCChhhHhhcC
Q 021221 59 VGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS------IPHFAIEESAIRPSILSKYG 132 (316)
Q Consensus 59 v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~------~~~v~~~~~~~~~~l~~~~~ 132 (316)
+..++.++ |++. + +.+++++|.||||||++|+.+.|.|+++++.+.+ ...+..+||+.+++++++|+
T Consensus 3 v~~l~~~~--f~~~----i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~ 75 (108)
T cd02996 3 IVSLTSGN--IDDI----L-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYR 75 (108)
T ss_pred eEEcCHhh--HHHH----H-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCC
Confidence 44555555 7766 3 5678999999999999999999999999987532 35677789999999999999
Q ss_pred CCccceEEEE-eCc-eeEEEeCCCCHHHHHHHH
Q 021221 133 VHGFPTLFLL-NSS-MRVRYHGSRTLDSLVAFY 163 (316)
Q Consensus 133 I~~~Pti~l~-~g~-~~~~~~G~~~~~~l~~fi 163 (316)
|+++||+++| +|+ ....|.|.++.++|.+||
T Consensus 76 v~~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 76 INKYPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CCcCCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 9999999999 777 458899999999999985
No 11
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.82 E-value=8.8e-20 Score=160.06 Aligned_cols=155 Identities=14% Similarity=0.123 Sum_probs=114.9
Q ss_pred CCCeEEEEEEc---CCChHHHhhhHHHHHHHHHcCCCc-EEEEEeCCCChhhHhhcCCCccceEEEE-eCcee-EEEeCC
Q 021221 80 SHEYVAVLFYA---SWCPFSRNFRPSFSVLSSLYSSIP-HFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMR-VRYHGS 153 (316)
Q Consensus 80 ~~~~vlV~Fya---~WC~~Ck~~~p~~~~la~~~~~~~-~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g~~~-~~~~G~ 153 (316)
.+...++.|++ +||++|+.+.|.++++++.++++. .+...|.+++++++++|+|.++||+++| +|+.. .++.|.
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~ 97 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGI 97 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeec
Confidence 34556777988 999999999999999999997542 1222244578999999999999999999 77776 589999
Q ss_pred CCHHHHHHHHHHhhCCC-CCCCccc-ccccC-ccccCCCcc-ccccCCcccCChhhhhchHHHHHHHHHH----------
Q 021221 154 RTLDSLVAFYSDVTASL-DKISPDK-VGKAS-NHEKHNNTE-EESCPFSWARSPENLLQQETYLALATAF---------- 219 (316)
Q Consensus 154 ~~~~~l~~fi~~~~~~~-~~~~~~~-~~~~~-~~~~~~~v~-f~~~~~pw~~~~~~~l~~~~~~~lA~~f---------- 219 (316)
.+.+++.+||+..++.. ....++. ..+.. ..+..+.+. | ++ |||++|+.+ .+.+..++...
T Consensus 98 ~~~~~l~~~i~~~~~~~~~~~~L~~~~~~~l~~~~~pv~I~~F-~a--~~C~~C~~~--~~~l~~l~~~~~~i~~~~vD~ 172 (215)
T TIGR02187 98 PAGYEFAALIEDIVRVSQGEPGLSEKTVELLQSLDEPVRIEVF-VT--PTCPYCPYA--VLMAHKFALANDKILGEMIEA 172 (215)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcEEEEE-EC--CCCCCcHHH--HHHHHHHHHhcCceEEEEEeC
Confidence 99999999999887532 1111111 11111 122333333 6 88 999999999 88888888653
Q ss_pred -----HHHHhHHhhhhhHhHhhccc
Q 021221 220 -----VLLRLVYIFLPTLLIFAQFT 239 (316)
Q Consensus 220 -----~~~~~~i~~~Ptl~~~~~~~ 239 (316)
...+++|.++||+.++.+|.
T Consensus 173 ~~~~~~~~~~~V~~vPtl~i~~~~~ 197 (215)
T TIGR02187 173 NENPDLAEKYGVMSVPKIVINKGVE 197 (215)
T ss_pred CCCHHHHHHhCCccCCEEEEecCCE
Confidence 23889999999999987664
No 12
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.81 E-value=1.7e-19 Score=140.81 Aligned_cols=99 Identities=24% Similarity=0.480 Sum_probs=84.2
Q ss_pred eEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCC--ChhhHhhcCCCccc
Q 021221 60 GVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAI--RPSILSKYGVHGFP 137 (316)
Q Consensus 60 ~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~--~~~l~~~~~I~~~P 137 (316)
..++.++ |++. +.+.+++++|.|||+||++|+.+.|.|+++++.+++...+...+++. +++++++|+|+++|
T Consensus 3 ~~l~~~~--~~~~----i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~P 76 (109)
T cd03002 3 YELTPKN--FDKV----VHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFP 76 (109)
T ss_pred EEcchhh--HHHH----HhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCC
Confidence 3445555 6665 56778899999999999999999999999999998866677778877 88999999999999
Q ss_pred eEEEE-eCc-----eeEEEeCCCCHHHHHHHHH
Q 021221 138 TLFLL-NSS-----MRVRYHGSRTLDSLVAFYS 164 (316)
Q Consensus 138 ti~l~-~g~-----~~~~~~G~~~~~~l~~fi~ 164 (316)
|+++| +|+ ....|.|.++.++|.+||.
T Consensus 77 t~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 77 TLKVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred EEEEEeCCCcccccccccccCccCHHHHHHHhC
Confidence 99999 554 4678999999999999973
No 13
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.81 E-value=2.9e-19 Score=141.67 Aligned_cols=103 Identities=14% Similarity=0.162 Sum_probs=89.0
Q ss_pred cceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChH--HH--hhhHHHHHHHHHc--CCCcEEEEEeCCCChhhHhhc
Q 021221 58 IVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPF--SR--NFRPSFSVLSSLY--SSIPHFAIEESAIRPSILSKY 131 (316)
Q Consensus 58 ~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~--Ck--~~~p~~~~la~~~--~~~~~v~~~~~~~~~~l~~~~ 131 (316)
.+..++.++ |++. +.+++.++++.||++||++ |+ .+.|.+++++.++ ++.+.++.+|++++++++++|
T Consensus 10 ~v~~lt~~n--F~~~----v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~ 83 (120)
T cd03065 10 RVIDLNEKN--YKQV----LKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKL 83 (120)
T ss_pred ceeeCChhh--HHHH----HHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHc
Confidence 344444444 7776 6778889999999999987 99 8899999999998 777888888999999999999
Q ss_pred CCCccceEEEE-eCceeEEEeCCCCHHHHHHHHHHhh
Q 021221 132 GVHGFPTLFLL-NSSMRVRYHGSRTLDSLVAFYSDVT 167 (316)
Q Consensus 132 ~I~~~Pti~l~-~g~~~~~~~G~~~~~~l~~fi~~~~ 167 (316)
||+++||+++| +|+.+. |.|.++.+.|.+||++..
T Consensus 84 ~I~~iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 84 GLDEEDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred CCccccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 99999999999 787665 999999999999999764
No 14
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.81 E-value=2.7e-19 Score=136.64 Aligned_cols=86 Identities=22% Similarity=0.388 Sum_probs=79.3
Q ss_pred cCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEE-eCceeEEEeCCCCHH
Q 021221 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTLD 157 (316)
Q Consensus 79 ~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g~~~~~~~G~~~~~ 157 (316)
+.+++++|+|||+||++|+.+.|.++++++.+++...+..+|++.+++++++|+|.++||+++| +|+.+.++.|..+.+
T Consensus 10 ~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~ 89 (96)
T cd02956 10 STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDGFQGAQPEE 89 (96)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeeeecCCCCHH
Confidence 4578999999999999999999999999999987667777889999999999999999999999 888888999999999
Q ss_pred HHHHHHH
Q 021221 158 SLVAFYS 164 (316)
Q Consensus 158 ~l~~fi~ 164 (316)
+|.+||+
T Consensus 90 ~l~~~l~ 96 (96)
T cd02956 90 QLRQMLD 96 (96)
T ss_pred HHHHHhC
Confidence 9999874
No 15
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.3e-19 Score=160.83 Aligned_cols=107 Identities=19% Similarity=0.404 Sum_probs=98.0
Q ss_pred EEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEE
Q 021221 61 VIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLF 140 (316)
Q Consensus 61 ~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~ 140 (316)
+++.++.||++.+. ..+..+||+|+||||||++|+.+.|.+++++..|+|...++.+|||.++.++.+|||+++||++
T Consensus 25 I~dvT~anfe~~V~--~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~ 102 (304)
T COG3118 25 IKDVTEANFEQEVI--QSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVY 102 (304)
T ss_pred ceechHhHHHHHHH--HHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEE
Confidence 66777777888732 2245569999999999999999999999999999999999999999999999999999999999
Q ss_pred EE-eCceeEEEeCCCCHHHHHHHHHHhhCC
Q 021221 141 LL-NSSMRVRYHGSRTLDSLVAFYSDVTAS 169 (316)
Q Consensus 141 l~-~g~~~~~~~G~~~~~~l~~fi~~~~~~ 169 (316)
.| +|+.+..|.|....+.|.+|++++.+.
T Consensus 103 af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 103 AFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 99 999999999999999999999999986
No 16
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.81 E-value=2.1e-19 Score=140.49 Aligned_cols=78 Identities=13% Similarity=0.191 Sum_probs=71.4
Q ss_pred cCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEE-eCceeEEEeCCCCH
Q 021221 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTL 156 (316)
Q Consensus 79 ~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g~~~~~~~G~~~~ 156 (316)
+.+++++|+|||+|||+|+.|.|.+++++++|++.+.+..+|.+++++++++|+|.++||+++| +|+.+.+..|..+.
T Consensus 12 ~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~~~~G~~~~ 90 (114)
T cd02954 12 EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMKIDLGTGNN 90 (114)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEEEEcCCCCC
Confidence 4688999999999999999999999999999998877778899999999999999999999999 89999888886544
No 17
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.81 E-value=8.6e-19 Score=153.51 Aligned_cols=109 Identities=19% Similarity=0.358 Sum_probs=89.9
Q ss_pred cceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccc
Q 021221 58 IVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFP 137 (316)
Q Consensus 58 ~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~P 137 (316)
.+..++.++ |++....-....+++++|+||||||++|+.+.|.|+++++.+++...++.+|++.+++++++|+|+++|
T Consensus 31 ~Vv~Lt~~n--F~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~P 108 (224)
T PTZ00443 31 ALVLLNDKN--FEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYP 108 (224)
T ss_pred CcEECCHHH--HHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCC
Confidence 344455444 877622111123689999999999999999999999999999987778888999999999999999999
Q ss_pred eEEEE-eCceeEEEeCCCCHHHHHHHHHHhhC
Q 021221 138 TLFLL-NSSMRVRYHGSRTLDSLVAFYSDVTA 168 (316)
Q Consensus 138 ti~l~-~g~~~~~~~G~~~~~~l~~fi~~~~~ 168 (316)
|+++| +|+.+..+.|.++.++|.+|+.+...
T Consensus 109 Tl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 109 TLLLFDKGKMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred EEEEEECCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 99999 77766666788999999999999875
No 18
>PRK09381 trxA thioredoxin; Provisional
Probab=99.80 E-value=1e-18 Score=136.77 Aligned_cols=104 Identities=21% Similarity=0.361 Sum_probs=91.6
Q ss_pred cceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccc
Q 021221 58 IVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFP 137 (316)
Q Consensus 58 ~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~P 137 (316)
.+..+++++ |++. +.+.+++++|+||++||++|+.+.|.++++++.+++...+...|++.++.++++|+|+++|
T Consensus 4 ~v~~~~~~~--~~~~----v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P 77 (109)
T PRK09381 4 KIIHLTDDS--FDTD----VLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIP 77 (109)
T ss_pred cceeeChhh--HHHH----HhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCC
Confidence 355566666 6654 3466889999999999999999999999999999887788888999999999999999999
Q ss_pred eEEEE-eCceeEEEeCCCCHHHHHHHHHHhh
Q 021221 138 TLFLL-NSSMRVRYHGSRTLDSLVAFYSDVT 167 (316)
Q Consensus 138 ti~l~-~g~~~~~~~G~~~~~~l~~fi~~~~ 167 (316)
|+++| +|+.+.++.|..+.++|.++|++++
T Consensus 78 t~~~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 78 TLLLFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEEEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 99999 8888889999999999999999875
No 19
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.4e-19 Score=172.30 Aligned_cols=127 Identities=25% Similarity=0.419 Sum_probs=103.9
Q ss_pred hhHHHHHHhhhcCCCcccc------CCCC-CcceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHH
Q 021221 34 ESVTDSIFRFQDSFCPISC------NDFQ-DIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVL 106 (316)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~------~~~~-~~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~l 106 (316)
.++..|+.++++|+..|.. ++++ .||+++.+++ |++ ++.+.++.|+|.|||||||||+++.|+|++|
T Consensus 336 ~~ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgkn--fd~----iv~de~KdVLvEfyAPWCgHCk~laP~~eeL 409 (493)
T KOG0190|consen 336 ENIESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGKN--FDD----IVLDEGKDVLVEFYAPWCGHCKALAPIYEEL 409 (493)
T ss_pred HHHHHHHHHHhcCccccccccCCCCcccccCCeEEEeecC--HHH----HhhccccceEEEEcCcccchhhhhhhHHHHH
Confidence 3588899999999987643 4444 7899999999 444 4889999999999999999999999999999
Q ss_pred HHHcCCC--cEEEEEeCCCChhhHhhcCCCccceEEEE-e--CceeEEEeCCCCHHHHHHHHHHhhC
Q 021221 107 SSLYSSI--PHFAIEESAIRPSILSKYGVHGFPTLFLL-N--SSMRVRYHGSRTLDSLVAFYSDVTA 168 (316)
Q Consensus 107 a~~~~~~--~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~--g~~~~~~~G~~~~~~l~~fi~~~~~ 168 (316)
++.|++. +.++..|.+.| -....+|.++|||++| . ++.++.|.|.|+.++|..|+.+..+
T Consensus 410 Ae~~~~~~~vviAKmDaTaN--d~~~~~~~~fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 410 AEKYKDDENVVIAKMDATAN--DVPSLKVDGFPTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred HHHhcCCCCcEEEEeccccc--cCccccccccceEEEecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence 9999884 44444444333 3345678889999999 3 3468999999999999999998876
No 20
>PHA02278 thioredoxin-like protein
Probab=99.80 E-value=5.7e-19 Score=136.63 Aligned_cols=84 Identities=10% Similarity=0.106 Sum_probs=72.4
Q ss_pred cCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCC----hhhHhhcCCCccceEEEE-eCceeEEEeCC
Q 021221 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIR----PSILSKYGVHGFPTLFLL-NSSMRVRYHGS 153 (316)
Q Consensus 79 ~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~----~~l~~~~~I~~~Pti~l~-~g~~~~~~~G~ 153 (316)
+.+++++|+|||+|||+|+.+.|.++++++.+.....+...|.+.+ ++++++|+|.++||+++| +|+.+.+..|.
T Consensus 12 ~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v~~~~G~ 91 (103)
T PHA02278 12 RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLVKKYEDQ 91 (103)
T ss_pred hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEEEEEeCC
Confidence 5789999999999999999999999999988655444555566554 689999999999999999 89999999999
Q ss_pred CCHHHHHHH
Q 021221 154 RTLDSLVAF 162 (316)
Q Consensus 154 ~~~~~l~~f 162 (316)
.+.+.|.++
T Consensus 92 ~~~~~l~~~ 100 (103)
T PHA02278 92 VTPMQLQEL 100 (103)
T ss_pred CCHHHHHhh
Confidence 898888765
No 21
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.80 E-value=7.3e-19 Score=135.57 Aligned_cols=97 Identities=21% Similarity=0.462 Sum_probs=81.1
Q ss_pred ceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC-CcEEEEEeCCCChhhHhhcCCCccc
Q 021221 59 VGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESAIRPSILSKYGVHGFP 137 (316)
Q Consensus 59 v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~-~~~v~~~~~~~~~~l~~~~~I~~~P 137 (316)
+..++.++ |++. + .++ ++|+|||+||++|+.+.|.|+++++.+++ .+.++..|++.++.++++|+|+++|
T Consensus 3 v~~l~~~~--f~~~----~--~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P 73 (101)
T cd02994 3 VVELTDSN--WTLV----L--EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALP 73 (101)
T ss_pred eEEcChhh--HHHH----h--CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccC
Confidence 34455555 7765 3 233 79999999999999999999999998765 3667778899999999999999999
Q ss_pred eEEEE-eCceeEEEeCCCCHHHHHHHHHH
Q 021221 138 TLFLL-NSSMRVRYHGSRTLDSLVAFYSD 165 (316)
Q Consensus 138 ti~l~-~g~~~~~~~G~~~~~~l~~fi~~ 165 (316)
|+++| +|+ +.+|.|.++.++|.+|+++
T Consensus 74 t~~~~~~g~-~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 74 TIYHAKDGV-FRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred EEEEeCCCC-EEEecCCCCHHHHHHHHhC
Confidence 99999 776 5889999999999999874
No 22
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.80 E-value=5.9e-19 Score=138.79 Aligned_cols=87 Identities=15% Similarity=0.216 Sum_probs=79.4
Q ss_pred cCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC-CcEEEEEeCCCChhhHhhcCCCccceEEEE-eCceeEEEeCCCCH
Q 021221 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTL 156 (316)
Q Consensus 79 ~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~-~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g~~~~~~~G~~~~ 156 (316)
+.+++++|+||||||++|+.+.|.++++++.+++ ...+..+|++.++.++++++|+++||+++| +|+.+.++.|..+.
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g~~~~~~~G~~~~ 101 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIINGQVTFYHDSSFTK 101 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECCEEEEEecCCCCH
Confidence 4689999999999999999999999999999975 366777788889999999999999999999 88888888999999
Q ss_pred HHHHHHHHH
Q 021221 157 DSLVAFYSD 165 (316)
Q Consensus 157 ~~l~~fi~~ 165 (316)
+.|.+||++
T Consensus 102 ~~l~~~i~~ 110 (111)
T cd02963 102 QHVVDFVRK 110 (111)
T ss_pred HHHHHHHhc
Confidence 999999986
No 23
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.78 E-value=2.2e-18 Score=133.00 Aligned_cols=91 Identities=26% Similarity=0.522 Sum_probs=81.4
Q ss_pred HHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEE-eC-ce
Q 021221 69 LQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NS-SM 146 (316)
Q Consensus 69 ~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g-~~ 146 (316)
|++. +.+.+++++|+||++||++|+.+.|.|+++++.+++...+...|++.+++++++|+|+++||+++| +| ..
T Consensus 10 ~~~~----i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~ 85 (103)
T cd03001 10 FDKK----VLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAGKNS 85 (103)
T ss_pred HHHH----HhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCCCcc
Confidence 5555 456677899999999999999999999999999988788888899999999999999999999999 55 56
Q ss_pred eEEEeCCCCHHHHHHHH
Q 021221 147 RVRYHGSRTLDSLVAFY 163 (316)
Q Consensus 147 ~~~~~G~~~~~~l~~fi 163 (316)
...|.|.++.++|.+|+
T Consensus 86 ~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 86 PQDYQGGRTAKAIVSAA 102 (103)
T ss_pred eeecCCCCCHHHHHHHh
Confidence 78899999999999986
No 24
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.78 E-value=1.8e-18 Score=133.23 Aligned_cols=95 Identities=25% Similarity=0.518 Sum_probs=80.7
Q ss_pred EEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC---CcEEEEEeCCCChhhHhhcCCCccc
Q 021221 61 VIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS---IPHFAIEESAIRPSILSKYGVHGFP 137 (316)
Q Consensus 61 ~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~---~~~v~~~~~~~~~~l~~~~~I~~~P 137 (316)
.+++++ |++. +. + ++++|+|||+||++|+.+.|.++++++.+.+ ...+...|++.+.+++++|+|.++|
T Consensus 4 ~l~~~~--f~~~----~~-~-~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P 75 (102)
T cd03005 4 ELTEDN--FDHH----IA-E-GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYP 75 (102)
T ss_pred ECCHHH--HHHH----hh-c-CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCC
Confidence 344444 6666 32 3 3599999999999999999999999999876 4666777899999999999999999
Q ss_pred eEEEE-eCceeEEEeCCCCHHHHHHHH
Q 021221 138 TLFLL-NSSMRVRYHGSRTLDSLVAFY 163 (316)
Q Consensus 138 ti~l~-~g~~~~~~~G~~~~~~l~~fi 163 (316)
|+++| +|+.+.+|.|.++.++|.+||
T Consensus 76 t~~~~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 76 TLLLFKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EEEEEeCCCeeeEeeCCCCHHHHHhhC
Confidence 99999 888888999999999998875
No 25
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.77 E-value=3.3e-18 Score=132.76 Aligned_cols=87 Identities=30% Similarity=0.571 Sum_probs=76.9
Q ss_pred CCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC---CcEEEEEeCCCChhhHhhcCCCccceEEEEeCceeEEEeCCCCH
Q 021221 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS---IPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTL 156 (316)
Q Consensus 80 ~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~---~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~~g~~~~~~~G~~~~ 156 (316)
.+++++|.|||+||++|+.+.|.|+++++.+++ ...+...|++..++++++|+|.++||+++|+|+...+|.|.++.
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~~~~~G~~~~ 93 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLAYNYRGPRTK 93 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCCceeecCCCCH
Confidence 467999999999999999999999999998853 35566678888899999999999999999965567889999999
Q ss_pred HHHHHHHHHh
Q 021221 157 DSLVAFYSDV 166 (316)
Q Consensus 157 ~~l~~fi~~~ 166 (316)
++|.+|+++.
T Consensus 94 ~~l~~~~~~~ 103 (104)
T cd03000 94 DDIVEFANRV 103 (104)
T ss_pred HHHHHHHHhh
Confidence 9999999874
No 26
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.77 E-value=7.5e-18 Score=130.66 Aligned_cols=85 Identities=12% Similarity=0.088 Sum_probs=71.0
Q ss_pred cCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCC---hhhHhhcCCCccceEEEE-eCceeEEEeCCC
Q 021221 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIR---PSILSKYGVHGFPTLFLL-NSSMRVRYHGSR 154 (316)
Q Consensus 79 ~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~---~~l~~~~~I~~~Pti~l~-~g~~~~~~~G~~ 154 (316)
..+++++|+|||+||++|+.+.|.++++++.++++.+ ..+|.+++ .+++++|+|+++||+++| +|+.+.++.|.
T Consensus 13 ~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~-~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~- 90 (103)
T cd02985 13 AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVF-LLVNGDENDSTMELCRREKIIEVPHFLFYKDGEKIHEEEGI- 90 (103)
T ss_pred cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEE-EEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeEEEEEeCC-
Confidence 4589999999999999999999999999999965544 44456555 489999999999999999 89999999996
Q ss_pred CHHHHHHHHHH
Q 021221 155 TLDSLVAFYSD 165 (316)
Q Consensus 155 ~~~~l~~fi~~ 165 (316)
..++|.+.+..
T Consensus 91 ~~~~l~~~~~~ 101 (103)
T cd02985 91 GPDELIGDVLY 101 (103)
T ss_pred CHHHHHHHHHh
Confidence 56777766653
No 27
>PRK10996 thioredoxin 2; Provisional
Probab=99.77 E-value=6.6e-18 Score=138.11 Aligned_cols=102 Identities=19% Similarity=0.368 Sum_probs=88.0
Q ss_pred EEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEE
Q 021221 61 VIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLF 140 (316)
Q Consensus 61 ~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~ 140 (316)
+++++..+|+++ .+.+++++|+|||+||++|+.+.|.|+++++.+.+...+...|.+.+++++++|+|+++||++
T Consensus 37 ~i~~~~~~~~~~-----i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptli 111 (139)
T PRK10996 37 VINATGETLDKL-----LQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIM 111 (139)
T ss_pred CEEcCHHHHHHH-----HhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEE
Confidence 344444456665 356899999999999999999999999999998876666666888899999999999999999
Q ss_pred EE-eCceeEEEeCCCCHHHHHHHHHHhh
Q 021221 141 LL-NSSMRVRYHGSRTLDSLVAFYSDVT 167 (316)
Q Consensus 141 l~-~g~~~~~~~G~~~~~~l~~fi~~~~ 167 (316)
+| +|+.+.++.|..+.+.|.+|+++++
T Consensus 112 i~~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 112 IFKNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 99 8998999999999999999999763
No 28
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.77 E-value=4.6e-18 Score=131.60 Aligned_cols=85 Identities=19% Similarity=0.329 Sum_probs=75.2
Q ss_pred cCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC-CcEEEEEeCCCChhhHhhcCCCccceEEEE-eCceeEEEeCCCCH
Q 021221 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTL 156 (316)
Q Consensus 79 ~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~-~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g~~~~~~~G~~~~ 156 (316)
+++++++|+|||+||++|+.+.|.++++++.+++ ...+..+|.+ +++++++|+|+++||+++| +|+.+.+..|. +.
T Consensus 15 ~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~-~~ 92 (102)
T cd02948 15 SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGELVAVIRGA-NA 92 (102)
T ss_pred ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCEEEEEEecC-Ch
Confidence 5789999999999999999999999999999975 3566767777 7889999999999999999 88888888885 88
Q ss_pred HHHHHHHHH
Q 021221 157 DSLVAFYSD 165 (316)
Q Consensus 157 ~~l~~fi~~ 165 (316)
+.|.++|++
T Consensus 93 ~~~~~~i~~ 101 (102)
T cd02948 93 PLLNKTITE 101 (102)
T ss_pred HHHHHHHhh
Confidence 999998875
No 29
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.76 E-value=3.6e-18 Score=131.82 Aligned_cols=99 Identities=27% Similarity=0.536 Sum_probs=84.0
Q ss_pred cceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC--CcEEEEEeCCCChhhHhhcCCCc
Q 021221 58 IVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEESAIRPSILSKYGVHG 135 (316)
Q Consensus 58 ~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~--~~~v~~~~~~~~~~l~~~~~I~~ 135 (316)
||..+++++ |++. +.+.+++++|+||++||++|+.+.|.++++++.+++ ...++..|++.+ +++..+++.+
T Consensus 1 ~v~~l~~~~--f~~~----i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~ 73 (104)
T cd02995 1 PVKVVVGKN--FDEV----VLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDG 73 (104)
T ss_pred CeEEEchhh--hHHH----HhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCC
Confidence 466777777 6665 556779999999999999999999999999999877 356667788765 6889999999
Q ss_pred cceEEEE-eCc--eeEEEeCCCCHHHHHHHH
Q 021221 136 FPTLFLL-NSS--MRVRYHGSRTLDSLVAFY 163 (316)
Q Consensus 136 ~Pti~l~-~g~--~~~~~~G~~~~~~l~~fi 163 (316)
+||+++| +|+ ...+|.|..+.++|.+||
T Consensus 74 ~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 74 FPTILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CCEEEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 9999999 665 678899999999999986
No 30
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=7.6e-18 Score=130.62 Aligned_cols=87 Identities=20% Similarity=0.349 Sum_probs=75.0
Q ss_pred ccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEE-eCceeEEEeCCCCH
Q 021221 78 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTL 156 (316)
Q Consensus 78 ~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g~~~~~~~G~~~~ 156 (316)
..++++++|+|||+|||+|+.+.|.+++|+.+|++ +.+..+|.|+..++++.++|++.||+++| +|+.+.++.|. +.
T Consensus 18 ~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa-~~ 95 (106)
T KOG0907|consen 18 EAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGA-NK 95 (106)
T ss_pred hCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecC-CH
Confidence 45679999999999999999999999999999999 55544566668999999999999999999 89999999998 45
Q ss_pred HHHHHHHHHh
Q 021221 157 DSLVAFYSDV 166 (316)
Q Consensus 157 ~~l~~fi~~~ 166 (316)
+++.+.+.++
T Consensus 96 ~~l~~~i~~~ 105 (106)
T KOG0907|consen 96 AELEKKIAKH 105 (106)
T ss_pred HHHHHHHHhc
Confidence 5777777653
No 31
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.75 E-value=6.9e-18 Score=129.69 Aligned_cols=89 Identities=29% Similarity=0.582 Sum_probs=80.7
Q ss_pred cCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC--CcEEEEEeCCCChhhHhhcCCCccceEEEE-eCceeEEEeCCCC
Q 021221 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRT 155 (316)
Q Consensus 79 ~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~--~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g~~~~~~~G~~~ 155 (316)
.++++++|+||++||++|+.+.|.++++++.+++ ...+...|+++++.++++|+|+++|++++| +|+.+.+|.|..+
T Consensus 11 ~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~~~ 90 (102)
T TIGR01126 11 LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGKKPVDYEGGRD 90 (102)
T ss_pred ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCCcceeecCCCC
Confidence 3789999999999999999999999999999887 577777789999999999999999999999 5655889999999
Q ss_pred HHHHHHHHHHhh
Q 021221 156 LDSLVAFYSDVT 167 (316)
Q Consensus 156 ~~~l~~fi~~~~ 167 (316)
.++|..||++++
T Consensus 91 ~~~l~~~i~~~~ 102 (102)
T TIGR01126 91 LEAIVEFVNEKS 102 (102)
T ss_pred HHHHHHHHHhcC
Confidence 999999998763
No 32
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.75 E-value=7e-18 Score=132.16 Aligned_cols=101 Identities=22% Similarity=0.449 Sum_probs=79.9
Q ss_pred ceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCC-cEEEEEeCCC-ChhhHh-hcCCCc
Q 021221 59 VGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSI-PHFAIEESAI-RPSILS-KYGVHG 135 (316)
Q Consensus 59 v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~-~~v~~~~~~~-~~~l~~-~~~I~~ 135 (316)
|..++.++ |+..... .+.+++++|.||++||++|+++.|.|+++++.+++. ..+..++++. +..++. .|+|++
T Consensus 3 v~~~~~~~--~~~~~~~--~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~ 78 (109)
T cd02993 3 VVTLSRAE--IEALAKG--ERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKS 78 (109)
T ss_pred ceeccHHH--HHHHHhh--hhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCc
Confidence 34444444 6665211 246789999999999999999999999999999863 5566678876 577886 499999
Q ss_pred cceEEEE-e-CceeEEEeCC-CCHHHHHHHH
Q 021221 136 FPTLFLL-N-SSMRVRYHGS-RTLDSLVAFY 163 (316)
Q Consensus 136 ~Pti~l~-~-g~~~~~~~G~-~~~~~l~~fi 163 (316)
+||+++| + ++....|.|. ++.++|..||
T Consensus 79 ~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 79 FPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CCEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 9999999 4 4578899995 8999999885
No 33
>PTZ00102 disulphide isomerase; Provisional
Probab=99.75 E-value=1.9e-17 Score=161.59 Aligned_cols=106 Identities=23% Similarity=0.458 Sum_probs=89.6
Q ss_pred cceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC---CcEEEEEeCCCChhhHhhcCCC
Q 021221 58 IVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS---IPHFAIEESAIRPSILSKYGVH 134 (316)
Q Consensus 58 ~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~---~~~v~~~~~~~~~~l~~~~~I~ 134 (316)
.+..++.++ |++. + +++++++|.|||+||++|+++.|.|+++++.+.+ .+.++.+||+.+.++|++|+|.
T Consensus 33 ~v~~l~~~~--f~~~----i-~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~ 105 (477)
T PTZ00102 33 HVTVLTDST--FDKF----I-TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVR 105 (477)
T ss_pred CcEEcchhh--HHHH----H-hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCC
Confidence 345555555 7776 2 4568999999999999999999999999987643 4677778999999999999999
Q ss_pred ccceEEEE-eCceeEEEeCCCCHHHHHHHHHHhhCCCC
Q 021221 135 GFPTLFLL-NSSMRVRYHGSRTLDSLVAFYSDVTASLD 171 (316)
Q Consensus 135 ~~Pti~l~-~g~~~~~~~G~~~~~~l~~fi~~~~~~~~ 171 (316)
++||+++| +|+.+ +|.|.++.+.|.+|+++.+++..
T Consensus 106 ~~Pt~~~~~~g~~~-~y~g~~~~~~l~~~l~~~~~~~~ 142 (477)
T PTZ00102 106 GYPTIKFFNKGNPV-NYSGGRTADGIVSWIKKLTGPAV 142 (477)
T ss_pred cccEEEEEECCceE-EecCCCCHHHHHHHHHHhhCCCc
Confidence 99999999 66655 99999999999999999998653
No 34
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.75 E-value=1.1e-17 Score=129.16 Aligned_cols=91 Identities=24% Similarity=0.546 Sum_probs=78.0
Q ss_pred cHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcC--CCcEEEEEeCCC--ChhhHhhcCCCccceEEEE-
Q 021221 68 SLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYS--SIPHFAIEESAI--RPSILSKYGVHGFPTLFLL- 142 (316)
Q Consensus 68 ~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~--~~~~v~~~~~~~--~~~l~~~~~I~~~Pti~l~- 142 (316)
+|++. + +++++++|.|||+||++|+.+.|.++++++.++ +...+...|++. ++.++++|+|+++||+++|
T Consensus 9 ~~~~~----~-~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~ 83 (104)
T cd02997 9 DFRKF----L-KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFE 83 (104)
T ss_pred hHHHH----H-hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEe
Confidence 36665 3 456699999999999999999999999999887 444555567777 8999999999999999999
Q ss_pred eCceeEEEeCCCCHHHHHHHH
Q 021221 143 NSSMRVRYHGSRTLDSLVAFY 163 (316)
Q Consensus 143 ~g~~~~~~~G~~~~~~l~~fi 163 (316)
+|+.+.+|.|..+.++|.+|+
T Consensus 84 ~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 84 NGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred CCCeeEEeCCCCCHHHHHhhC
Confidence 888889999999999999875
No 35
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.75 E-value=5.9e-18 Score=132.74 Aligned_cols=96 Identities=18% Similarity=0.258 Sum_probs=79.7
Q ss_pred EeCCcccHHHHHhHHhccCCCeEEEEEEc--CCCh---HHHhhhHHHHHHHHHcCCCcEEEEEeC-----CCChhhHhhc
Q 021221 62 IEGDEVSLQMALNMVHKNSHEYVAVLFYA--SWCP---FSRNFRPSFSVLSSLYSSIPHFAIEES-----AIRPSILSKY 131 (316)
Q Consensus 62 l~~~~~~~~~~~~~i~~~~~~~vlV~Fya--~WC~---~Ck~~~p~~~~la~~~~~~~~v~~~~~-----~~~~~l~~~~ 131 (316)
++.+..||++. .+.++.+||.||| |||+ +|++++|.+.+.+.. +.++.+|| .++.+||++|
T Consensus 4 v~L~~~nF~~~-----v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~----v~lakVd~~d~~~~~~~~L~~~y 74 (116)
T cd03007 4 VDLDTVTFYKV-----IPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD----LLVAEVGIKDYGEKLNMELGERY 74 (116)
T ss_pred eECChhhHHHH-----HhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc----eEEEEEecccccchhhHHHHHHh
Confidence 44555558877 3577899999999 9999 899988888776654 66788888 4578899999
Q ss_pred CCC--ccceEEEE-eCc--eeEEEeCC-CCHHHHHHHHHHh
Q 021221 132 GVH--GFPTLFLL-NSS--MRVRYHGS-RTLDSLVAFYSDV 166 (316)
Q Consensus 132 ~I~--~~Pti~l~-~g~--~~~~~~G~-~~~~~l~~fi~~~ 166 (316)
+|+ +|||+++| +|. ....|.|. |+.++|++||.++
T Consensus 75 ~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 75 KLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999 99999999 664 56899997 9999999999986
No 36
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.74 E-value=3.6e-17 Score=135.11 Aligned_cols=90 Identities=22% Similarity=0.366 Sum_probs=74.6
Q ss_pred cceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC-CcEEEEEeCCCChhhHhhcCCCc-
Q 021221 58 IVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESAIRPSILSKYGVHG- 135 (316)
Q Consensus 58 ~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~-~~~v~~~~~~~~~~l~~~~~I~~- 135 (316)
.+..++.++ |++. +..+.+++++|+|||+||++|+.+.|.++++++.+++ ...+..+|++++++++++|+|.+
T Consensus 29 ~v~~l~~~~--f~~~---l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~ 103 (152)
T cd02962 29 HIKYFTPKT--LEEE---LERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTS 103 (152)
T ss_pred ccEEcCHHH--HHHH---HHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceec
Confidence 344455444 6665 2234568999999999999999999999999999875 36677778999999999999988
Q ss_pred -----cceEEEE-eCceeEEEeC
Q 021221 136 -----FPTLFLL-NSSMRVRYHG 152 (316)
Q Consensus 136 -----~Pti~l~-~g~~~~~~~G 152 (316)
+||+++| +|+++.++.|
T Consensus 104 ~~v~~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 104 PLSKQLPTIILFQGGKEVARRPY 126 (152)
T ss_pred CCcCCCCEEEEEECCEEEEEEec
Confidence 9999999 9999999987
No 37
>PTZ00102 disulphide isomerase; Provisional
Probab=99.74 E-value=2.9e-17 Score=160.34 Aligned_cols=132 Identities=19% Similarity=0.347 Sum_probs=112.0
Q ss_pred CCchhHHHHHHhhhcCCCcccc------CCCCCcceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHH
Q 021221 31 CPTESVTDSIFRFQDSFCPISC------NDFQDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFS 104 (316)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~ 104 (316)
.+.+++.+|+..+..|+..+.. +....++..+++++ |++. +.+.+++++|+|||+||++|+.+.|.|+
T Consensus 325 ~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~--f~~~----v~~~~k~vlv~f~a~wC~~C~~~~p~~~ 398 (477)
T PTZ00102 325 DSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNT--FEEI----VFKSDKDVLLEIYAPWCGHCKNLEPVYN 398 (477)
T ss_pred CCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccc--hHHH----HhcCCCCEEEEEECCCCHHHHHHHHHHH
Confidence 4577899999999999887643 33456788899988 6665 5678899999999999999999999999
Q ss_pred HHHHHcCC--CcEEEEEeCCCChhhHhhcCCCccceEEEE-eCce-eEEEeCCCCHHHHHHHHHHhhC
Q 021221 105 VLSSLYSS--IPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSM-RVRYHGSRTLDSLVAFYSDVTA 168 (316)
Q Consensus 105 ~la~~~~~--~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g~~-~~~~~G~~~~~~l~~fi~~~~~ 168 (316)
++++.+++ .+.+...|++.+..++++|+|+++||+++| +|+. ..+|.|.++.++|.+||+++..
T Consensus 399 ~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 399 ELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHAT 466 (477)
T ss_pred HHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCC
Confidence 99998875 356677788888899999999999999999 5544 4689999999999999999886
No 38
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.73 E-value=4.7e-17 Score=132.08 Aligned_cols=97 Identities=11% Similarity=0.157 Sum_probs=82.9
Q ss_pred HHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEE-EE-eCc-
Q 021221 69 LQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLF-LL-NSS- 145 (316)
Q Consensus 69 ~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~-l~-~g~- 145 (316)
|+++ +....+++++|+|||+|||+|+.+.|.++++++.+++...+..+|.|+++++++.|+|++.||++ +| +|+
T Consensus 14 ~d~~---I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~~ 90 (142)
T PLN00410 14 VDQA---ILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKHI 90 (142)
T ss_pred HHHH---HHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCeE
Confidence 4544 33357889999999999999999999999999999998888888999999999999999887777 66 777
Q ss_pred eeEEEeC--------CCCHHHHHHHHHHhhC
Q 021221 146 MRVRYHG--------SRTLDSLVAFYSDVTA 168 (316)
Q Consensus 146 ~~~~~~G--------~~~~~~l~~fi~~~~~ 168 (316)
.+.+..| ..+.++|.+-++....
T Consensus 91 ~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~ 121 (142)
T PLN00410 91 MIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
T ss_pred EEEEecccccccccccCCHHHHHHHHHHHHH
Confidence 6677778 5788899998888765
No 39
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.73 E-value=6e-17 Score=132.89 Aligned_cols=102 Identities=19% Similarity=0.338 Sum_probs=83.5
Q ss_pred CCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCC--CChhhHhhcCCCccceEEE
Q 021221 64 GDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESA--IRPSILSKYGVHGFPTLFL 141 (316)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~--~~~~l~~~~~I~~~Pti~l 141 (316)
.+...++++ ...+++++|+|||+||++|+.+.|.++++++.|.+...+..++.+ ...+++++|+|.++||+++
T Consensus 8 ~~~~~~~~a-----~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~ 82 (142)
T cd02950 8 ASSTPPEVA-----LSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVF 82 (142)
T ss_pred hccCCHHHH-----HhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEE
Confidence 334446665 357899999999999999999999999999999764333333333 3468999999999999999
Q ss_pred E--eCceeEEEeCCCCHHHHHHHHHHhhCCC
Q 021221 142 L--NSSMRVRYHGSRTLDSLVAFYSDVTASL 170 (316)
Q Consensus 142 ~--~g~~~~~~~G~~~~~~l~~fi~~~~~~~ 170 (316)
| +|+.+.++.|..+.++|.++|++.+...
T Consensus 83 ~~~~G~~v~~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 83 LDREGNEEGQSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred ECCCCCEEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 9 5888889999999999999999988744
No 40
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.73 E-value=2.5e-17 Score=127.23 Aligned_cols=98 Identities=29% Similarity=0.570 Sum_probs=81.7
Q ss_pred eEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcC--CCcEEEEEeCCC-ChhhHhhcCCCcc
Q 021221 60 GVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYS--SIPHFAIEESAI-RPSILSKYGVHGF 136 (316)
Q Consensus 60 ~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~--~~~~v~~~~~~~-~~~l~~~~~I~~~ 136 (316)
..++.++ +++. +.+.+++++|+||++||++|+.+.|.++++++.++ +...+...|++. +++++++|+|.++
T Consensus 3 ~~l~~~~--~~~~----~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~ 76 (105)
T cd02998 3 VELTDSN--FDKV----VGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGF 76 (105)
T ss_pred EEcchhc--HHHH----hcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCc
Confidence 3445555 6554 55667799999999999999999999999999987 345566668888 8999999999999
Q ss_pred ceEEEE-eC-ceeEEEeCCCCHHHHHHHH
Q 021221 137 PTLFLL-NS-SMRVRYHGSRTLDSLVAFY 163 (316)
Q Consensus 137 Pti~l~-~g-~~~~~~~G~~~~~~l~~fi 163 (316)
||+++| +| +....|.|.++.++|.+||
T Consensus 77 P~~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 77 PTLKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CEEEEEeCCCCCccccCCccCHHHHHhhC
Confidence 999999 44 6778899999999999885
No 41
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.73 E-value=3.5e-17 Score=127.14 Aligned_cols=94 Identities=16% Similarity=0.169 Sum_probs=83.0
Q ss_pred EEeCCcccHHHHHhHHhccCCCeEEEEEEcCC--ChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccce
Q 021221 61 VIEGDEVSLQMALNMVHKNSHEYVAVLFYASW--CPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPT 138 (316)
Q Consensus 61 ~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~W--C~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pt 138 (316)
-++..+ |++. + ..+.+++|.|||+| ||+|+.+.|.+++++++|++...+..+|.+++++++.+|+|+++||
T Consensus 14 ~~~~~~--~~~~----~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPT 86 (111)
T cd02965 14 RVDAAT--LDDW----L-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPA 86 (111)
T ss_pred cccccc--HHHH----H-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCE
Confidence 355556 7765 2 67789999999997 9999999999999999999988787888889999999999999999
Q ss_pred EEEE-eCceeEEEeCCCCHHHHHH
Q 021221 139 LFLL-NSSMRVRYHGSRTLDSLVA 161 (316)
Q Consensus 139 i~l~-~g~~~~~~~G~~~~~~l~~ 161 (316)
+++| +|+.+.++.|..+.+++..
T Consensus 87 li~fkdGk~v~~~~G~~~~~e~~~ 110 (111)
T cd02965 87 LLFFRDGRYVGVLAGIRDWDEYVA 110 (111)
T ss_pred EEEEECCEEEEEEeCccCHHHHhh
Confidence 9999 9999999999999988753
No 42
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.72 E-value=7.7e-17 Score=123.50 Aligned_cols=91 Identities=16% Similarity=0.300 Sum_probs=81.4
Q ss_pred hHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEE-eCceeEEEeC
Q 021221 74 NMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHG 152 (316)
Q Consensus 74 ~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g~~~~~~~G 152 (316)
+..+.+.+++++|+||++||+.|+.+.|.++++++.+.+...+...|.+++++++++++|.++||+++| +|+.+.++.|
T Consensus 6 ~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g 85 (97)
T cd02949 6 RKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISG 85 (97)
T ss_pred HHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeC
Confidence 334567899999999999999999999999999999987666667788889999999999999999999 8888999999
Q ss_pred CCCHHHHHHHHH
Q 021221 153 SRTLDSLVAFYS 164 (316)
Q Consensus 153 ~~~~~~l~~fi~ 164 (316)
..+.++|.++++
T Consensus 86 ~~~~~~~~~~l~ 97 (97)
T cd02949 86 VKMKSEYREFIE 97 (97)
T ss_pred CccHHHHHHhhC
Confidence 999999998874
No 43
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.71 E-value=1e-16 Score=122.66 Aligned_cols=91 Identities=26% Similarity=0.402 Sum_probs=82.0
Q ss_pred hccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEE-eCceeEEEeCCCC
Q 021221 77 HKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRT 155 (316)
Q Consensus 77 ~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g~~~~~~~G~~~ 155 (316)
+.+.+++++|.||++||++|+.+.|.++++++.+++...+...|++.++.++++|+|.++||+++| +|+....+.|..+
T Consensus 10 ~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~ 89 (101)
T TIGR01068 10 IASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEVDRSVGALP 89 (101)
T ss_pred HhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEeeeecCCCC
Confidence 445677999999999999999999999999999987677777788899999999999999999999 8888888999999
Q ss_pred HHHHHHHHHHhh
Q 021221 156 LDSLVAFYSDVT 167 (316)
Q Consensus 156 ~~~l~~fi~~~~ 167 (316)
.+.|.+|+++.+
T Consensus 90 ~~~l~~~l~~~~ 101 (101)
T TIGR01068 90 KAALKQLINKNL 101 (101)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 44
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.69 E-value=2.3e-17 Score=145.49 Aligned_cols=93 Identities=20% Similarity=0.502 Sum_probs=85.2
Q ss_pred cCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC---CcEEEEEeCCCChhhHhhcCCCccceEEEEeCceeEEEeCCCC
Q 021221 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS---IPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRT 155 (316)
Q Consensus 79 ~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~---~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~~g~~~~~~~G~~~ 155 (316)
.++..|+|+||||||+||+++.|+|+++...+++ -+.++..||+..+.++.++||+||||+.+|+|...+.|.|+|+
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dYRG~R~ 120 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDYRGGRE 120 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeeecCCCcc
Confidence 4678999999999999999999999999887776 3678888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCC
Q 021221 156 LDSLVAFYSDVTASLD 171 (316)
Q Consensus 156 ~~~l~~fi~~~~~~~~ 171 (316)
.+.|++|-.+..++..
T Consensus 121 Kd~iieFAhR~a~aiI 136 (468)
T KOG4277|consen 121 KDAIIEFAHRCAAAII 136 (468)
T ss_pred HHHHHHHHHhccccee
Confidence 9999999999888543
No 45
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.69 E-value=3.4e-16 Score=123.40 Aligned_cols=90 Identities=18% Similarity=0.229 Sum_probs=72.4
Q ss_pred CcceEEeCCcccHHHHHhHHhccC--CCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCC
Q 021221 57 DIVGVIEGDEVSLQMALNMVHKNS--HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVH 134 (316)
Q Consensus 57 ~~v~~l~~~~~~~~~~~~~i~~~~--~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~ 134 (316)
+.+..++.++ |.+. +.+. +++++|+||+|||++|+.+.|.++++++.|+++. +..+|.+++ +++++|+|+
T Consensus 4 g~v~~i~~~~--f~~~----i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~-f~~vd~~~~-~l~~~~~i~ 75 (113)
T cd02957 4 GEVREISSKE--FLEE----VTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETK-FVKINAEKA-FLVNYLDIK 75 (113)
T ss_pred ceEEEEcHHH--HHHH----HHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcE-EEEEEchhh-HHHHhcCCC
Confidence 3445555544 6655 3333 4899999999999999999999999999998754 445566666 999999999
Q ss_pred ccceEEEE-eCceeEEEeCCC
Q 021221 135 GFPTLFLL-NSSMRVRYHGSR 154 (316)
Q Consensus 135 ~~Pti~l~-~g~~~~~~~G~~ 154 (316)
++||+++| +|+.+.++.|..
T Consensus 76 ~~Pt~~~f~~G~~v~~~~G~~ 96 (113)
T cd02957 76 VLPTLLVYKNGELIDNIVGFE 96 (113)
T ss_pred cCCEEEEEECCEEEEEEecHH
Confidence 99999999 899999998843
No 46
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.67 E-value=5.1e-16 Score=122.41 Aligned_cols=74 Identities=20% Similarity=0.244 Sum_probs=66.0
Q ss_pred cCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEE-eCceeEEEeCC
Q 021221 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGS 153 (316)
Q Consensus 79 ~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g~~~~~~~G~ 153 (316)
.++++++|+||+|||++|+.+.|.++++++.|+++ .+..+|.+++++++++|+|.++||+++| +|+.+.++.|.
T Consensus 20 ~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i-~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~~v~~~~g~ 94 (113)
T cd02989 20 KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLET-KFIKVNAEKAPFLVEKLNIKVLPTVILFKNGKTVDRIVGF 94 (113)
T ss_pred hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCC-EEEEEEcccCHHHHHHCCCccCCEEEEEECCEEEEEEECc
Confidence 45689999999999999999999999999999885 5555578889999999999999999999 89888888764
No 47
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.67 E-value=8.9e-16 Score=117.19 Aligned_cols=82 Identities=20% Similarity=0.323 Sum_probs=69.6
Q ss_pred CCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEE-eCceeEEEeCCCCHHHH
Q 021221 81 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTLDSL 159 (316)
Q Consensus 81 ~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g~~~~~~~G~~~~~~l 159 (316)
+++++|.||++||++|+++.|.++++++.+.....+...|.++.++++++|+|+++||+++| +|+.+.++.|. +.++|
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l 92 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIVDRVSGA-DPKEL 92 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEEEEEeCC-CHHHH
Confidence 69999999999999999999999999999644445555577788999999999999999999 88887788885 66777
Q ss_pred HHHH
Q 021221 160 VAFY 163 (316)
Q Consensus 160 ~~fi 163 (316)
.+.|
T Consensus 93 ~~~~ 96 (97)
T cd02984 93 AKKV 96 (97)
T ss_pred HHhh
Confidence 7655
No 48
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.67 E-value=3.1e-16 Score=119.45 Aligned_cols=85 Identities=34% Similarity=0.630 Sum_probs=75.2
Q ss_pred cCCCeEEEEEEcCCChHHHhhhHHHHHHHHHc--CCCcEEEEEeCCCChhhHhhcCCCccceEEEE-eC-ceeEEEeCCC
Q 021221 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLY--SSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NS-SMRVRYHGSR 154 (316)
Q Consensus 79 ~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~--~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g-~~~~~~~G~~ 154 (316)
.++++++|.||++||++|+.+.|.++++++.+ .+...+...+++.+..++++|+|+++||+++| ++ ....+|.|..
T Consensus 13 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~g~~ 92 (101)
T cd02961 13 KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPR 92 (101)
T ss_pred hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCCCcccccCCCCc
Confidence 34459999999999999999999999999998 45677777788888999999999999999999 44 6889999999
Q ss_pred CHHHHHHHH
Q 021221 155 TLDSLVAFY 163 (316)
Q Consensus 155 ~~~~l~~fi 163 (316)
+.++|.+|+
T Consensus 93 ~~~~i~~~~ 101 (101)
T cd02961 93 TLESLVEFI 101 (101)
T ss_pred CHHHHHhhC
Confidence 999998874
No 49
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.66 E-value=1.7e-15 Score=117.75 Aligned_cols=89 Identities=12% Similarity=0.167 Sum_probs=72.7
Q ss_pred ccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEE-eCceeE-EE-----
Q 021221 78 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRV-RY----- 150 (316)
Q Consensus 78 ~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g~~~~-~~----- 150 (316)
...+++++|.|+|+|||+|+.|.|.+++++++|++.+.+..+|.++.+++++.|+|.+.||+++| +|+.+. .|
T Consensus 11 ~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~~~d~gt~~~ 90 (114)
T cd02986 11 STAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHMKVDYGSPDH 90 (114)
T ss_pred hcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEEEEecCCCCC
Confidence 34689999999999999999999999999999998677777788999999999999999999988 666542 22
Q ss_pred ---eCC-CCHHHHHHHHHHh
Q 021221 151 ---HGS-RTLDSLVAFYSDV 166 (316)
Q Consensus 151 ---~G~-~~~~~l~~fi~~~ 166 (316)
++. .+.+++++.++..
T Consensus 91 ~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 91 TKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred cEEEEEcCchhHHHHHHHHH
Confidence 222 2457777766643
No 50
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.66 E-value=3.3e-16 Score=121.42 Aligned_cols=86 Identities=19% Similarity=0.257 Sum_probs=71.2
Q ss_pred cCCCeEEEEEEcCCChHHHhhhHHH---HHHHHHcCCCcEEEEEeCCC----ChhhHhhcCCCccceEEEEe---CceeE
Q 021221 79 NSHEYVAVLFYASWCPFSRNFRPSF---SVLSSLYSSIPHFAIEESAI----RPSILSKYGVHGFPTLFLLN---SSMRV 148 (316)
Q Consensus 79 ~~~~~vlV~Fya~WC~~Ck~~~p~~---~~la~~~~~~~~v~~~~~~~----~~~l~~~~~I~~~Pti~l~~---g~~~~ 148 (316)
+.+++++|+|||+||++|+.+.|.+ +++++.+.+...+...|.++ ..+++++|+|+++||+++|+ |+.+.
T Consensus 9 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~~g~~~~ 88 (104)
T cd02953 9 AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPGGEPEPL 88 (104)
T ss_pred HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCCCCCCCc
Confidence 5789999999999999999999988 67888887433333345544 46899999999999999993 67788
Q ss_pred EEeCCCCHHHHHHHHH
Q 021221 149 RYHGSRTLDSLVAFYS 164 (316)
Q Consensus 149 ~~~G~~~~~~l~~fi~ 164 (316)
++.|..+.++|.++|+
T Consensus 89 ~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 89 RLPGFLTADEFLEALE 104 (104)
T ss_pred ccccccCHHHHHHHhC
Confidence 9999999999998873
No 51
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=5.8e-16 Score=147.27 Aligned_cols=170 Identities=21% Similarity=0.303 Sum_probs=130.8
Q ss_pred EEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcC--CCcEEEEEeCCCChhhHhhcCCCccce
Q 021221 61 VIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYS--SIPHFAIEESAIRPSILSKYGVHGFPT 138 (316)
Q Consensus 61 ~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~--~~~~v~~~~~~~~~~l~~~~~I~~~Pt 138 (316)
+.+....+++.. +.+.+..++|.||+|||+||+.+.|.|++++..+. ..+.++..+++.+..++++++|.++||
T Consensus 146 v~~l~~~~~~~~----~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt 221 (383)
T KOG0191|consen 146 VFELTKDNFDET----VKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPT 221 (383)
T ss_pred eEEccccchhhh----hhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCce
Confidence 344444445554 56788999999999999999999999999999886 456777778878899999999999999
Q ss_pred EEEE-eCce-eEEEeCCCCHHHHHHHHHHhhCCC--CC---CCccc--ccc---c-------CccccCCCccccccCCcc
Q 021221 139 LFLL-NSSM-RVRYHGSRTLDSLVAFYSDVTASL--DK---ISPDK--VGK---A-------SNHEKHNNTEEESCPFSW 199 (316)
Q Consensus 139 i~l~-~g~~-~~~~~G~~~~~~l~~fi~~~~~~~--~~---~~~~~--~~~---~-------~~~~~~~~v~f~~~~~pw 199 (316)
+.+| +|.. ...|.|.|+.+.|..|+.+..+.. .. ...+. ... . .....+..+.| ++ ||
T Consensus 222 ~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~--~~ 298 (383)
T KOG0191|consen 222 LKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIPEPELKEIEDKDTFSPTFLDTAEFLDSLEKKKNKFVKF-YA--PW 298 (383)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHhhcCCCCCCcccccccCccccccchhhhhhhhhhhHHhhhhHhhh-hc--ch
Confidence 9999 6666 778889999999999999998853 11 10001 100 0 01122356677 78 99
Q ss_pred cCChhhhhchHHHHHHHHHH-------------------HHHHhHHhhhhhHhHhhccc
Q 021221 200 ARSPENLLQQETYLALATAF-------------------VLLRLVYIFLPTLLIFAQFT 239 (316)
Q Consensus 200 ~~~~~~~l~~~~~~~lA~~f-------------------~~~~~~i~~~Ptl~~~~~~~ 239 (316)
|+||... .|.|+..|... .|.+..+.+||++.++..+.
T Consensus 299 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (383)
T KOG0191|consen 299 CGHCGGF--APVYEDKAELGYPDLSKIKAAKLDCALLKSLCQKAIVRGYPTIKLYNYGK 355 (383)
T ss_pred hhccccc--chhHHHHHhccccccccceeeccccccccchhhHhhhhcCceeEeecccc
Confidence 9999999 99999999882 25888889999999887776
No 52
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.64 E-value=1.2e-15 Score=147.90 Aligned_cols=105 Identities=27% Similarity=0.499 Sum_probs=89.3
Q ss_pred eEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCC---cEEEEEeCCCChhhHhhcCCCcc
Q 021221 60 GVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSI---PHFAIEESAIRPSILSKYGVHGF 136 (316)
Q Consensus 60 ~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~---~~v~~~~~~~~~~l~~~~~I~~~ 136 (316)
..++.++ |+++ + +++++++|.|||+||++|+++.|.++++++.+.+. +.++.+||+.++++|++|+|.++
T Consensus 4 ~~l~~~~--~~~~----i-~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~ 76 (462)
T TIGR01130 4 LVLTKDN--FDDF----I-KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGY 76 (462)
T ss_pred eECCHHH--HHHH----H-hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccc
Confidence 3344444 7766 3 46789999999999999999999999999887642 67777899999999999999999
Q ss_pred ceEEEE-eCce-eEEEeCCCCHHHHHHHHHHhhCCCC
Q 021221 137 PTLFLL-NSSM-RVRYHGSRTLDSLVAFYSDVTASLD 171 (316)
Q Consensus 137 Pti~l~-~g~~-~~~~~G~~~~~~l~~fi~~~~~~~~ 171 (316)
||+++| +|+. +.+|.|.++.++|.+|+.+.+++..
T Consensus 77 Pt~~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~ 113 (462)
T TIGR01130 77 PTLKIFRNGEDSVSDYNGPRDADGIVKYMKKQSGPAV 113 (462)
T ss_pred cEEEEEeCCccceeEecCCCCHHHHHHHHHHhcCCCc
Confidence 999999 6776 7899999999999999999988543
No 53
>PTZ00051 thioredoxin; Provisional
Probab=99.64 E-value=1.8e-15 Score=115.78 Aligned_cols=80 Identities=23% Similarity=0.384 Sum_probs=69.7
Q ss_pred cCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEE-eCceeEEEeCCCCHH
Q 021221 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTLD 157 (316)
Q Consensus 79 ~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g~~~~~~~G~~~~~ 157 (316)
+.+++++|+||++||++|+.+.|.++++++.++++.++. .|++++.+++++|+|.++||+++| +|+.+.++.|. ..+
T Consensus 16 ~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~-vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~-~~~ 93 (98)
T PTZ00051 16 SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVK-VDVDELSEVAEKENITSMPTFKVFKNGSVVDTLLGA-NDE 93 (98)
T ss_pred hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEE-EECcchHHHHHHCCCceeeEEEEEeCCeEEEEEeCC-CHH
Confidence 567899999999999999999999999999988755444 467788999999999999999999 89999999996 555
Q ss_pred HHH
Q 021221 158 SLV 160 (316)
Q Consensus 158 ~l~ 160 (316)
+|.
T Consensus 94 ~~~ 96 (98)
T PTZ00051 94 ALK 96 (98)
T ss_pred Hhh
Confidence 554
No 54
>PTZ00062 glutaredoxin; Provisional
Probab=99.64 E-value=4.8e-16 Score=134.12 Aligned_cols=127 Identities=12% Similarity=0.080 Sum_probs=90.7
Q ss_pred HhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEE-eCceeEEEeCCC
Q 021221 76 VHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSR 154 (316)
Q Consensus 76 i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g~~~~~~~G~~ 154 (316)
++.++.+.++++|||+||++|+.|.|.+++++++|+++.++.++ .+ |+|.++||+++| +|+.+.++.|.
T Consensus 12 ~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~-~d--------~~V~~vPtfv~~~~g~~i~r~~G~- 81 (204)
T PTZ00062 12 LIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVN-LA--------DANNEYGVFEFYQNSQLINSLEGC- 81 (204)
T ss_pred HHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEc-cc--------cCcccceEEEEEECCEEEeeeeCC-
Confidence 34444477999999999999999999999999999987766664 32 999999999999 89999999987
Q ss_pred CHHHHHHHHHHhhCCCCCCCcccccccCcc-ccCCCccccccCCcccCChhhhhchHHHHH
Q 021221 155 TLDSLVAFYSDVTASLDKISPDKVGKASNH-EKHNNTEEESCPFSWARSPENLLQQETYLA 214 (316)
Q Consensus 155 ~~~~l~~fi~~~~~~~~~~~~~~~~~~~~~-~~~~~v~f~~~~~pw~~~~~~~l~~~~~~~ 214 (316)
+..+|..++.++.+........+.++.... ...++........|||+.|+++ ...+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~--k~~L~~ 140 (204)
T PTZ00062 82 NTSTLVSFIRGWAQKGSSEDTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAV--VNMLNS 140 (204)
T ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHH--HHHHHH
Confidence 699999999998885332222222222222 2222222211122899999987 444443
No 55
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.64 E-value=1.4e-15 Score=120.03 Aligned_cols=98 Identities=28% Similarity=0.442 Sum_probs=73.7
Q ss_pred cceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC---CcEEEEEeCC--CChhhHhhcC
Q 021221 58 IVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS---IPHFAIEESA--IRPSILSKYG 132 (316)
Q Consensus 58 ~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~---~~~v~~~~~~--~~~~l~~~~~ 132 (316)
++..++.++ |++. +.+.+++++|+|||+||++|+.+.|.|+++++.+++ ...++..||+ .+++++++|+
T Consensus 2 ~v~~l~~~~--f~~~----i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~ 75 (114)
T cd02992 2 PVIVLDAAS--FNSA----LLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFG 75 (114)
T ss_pred CeEECCHHh--HHHH----HhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCC
Confidence 344555555 6655 556678999999999999999999999999998753 4666767764 4678999999
Q ss_pred CCccceEEEE-eCce----eEEEeCC-CCHHHHHH
Q 021221 133 VHGFPTLFLL-NSSM----RVRYHGS-RTLDSLVA 161 (316)
Q Consensus 133 I~~~Pti~l~-~g~~----~~~~~G~-~~~~~l~~ 161 (316)
|+++||+++| +|+. -..|.|+ +..+++.+
T Consensus 76 i~~~Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02992 76 VTGYPTLRYFPPFSKEATDGLKQEGPERDVNELRE 110 (114)
T ss_pred CCCCCEEEEECCCCccCCCCCcccCCccCHHHHHH
Confidence 9999999999 4432 1356665 56666544
No 56
>PLN02309 5'-adenylylsulfate reductase
Probab=99.63 E-value=1.8e-15 Score=144.91 Aligned_cols=105 Identities=24% Similarity=0.448 Sum_probs=83.7
Q ss_pred cceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCC-cEEEEEeCC-CChhhHh-hcCCC
Q 021221 58 IVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSI-PHFAIEESA-IRPSILS-KYGVH 134 (316)
Q Consensus 58 ~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~-~~v~~~~~~-~~~~l~~-~~~I~ 134 (316)
.+..++.++ |++.+. ..+.+++++|+||||||++|+.|.|.|+++++.|.+. +.+...|++ .+.+++. +|+|+
T Consensus 346 ~Vv~Lt~~n--fe~ll~--~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~ 421 (457)
T PLN02309 346 NVVALSRAG--IENLLK--LENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLG 421 (457)
T ss_pred CcEECCHHH--HHHHHH--hhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCc
Confidence 344444444 666521 1367899999999999999999999999999999763 667777887 7788886 69999
Q ss_pred ccceEEEE-eCc-eeEEEeC-CCCHHHHHHHHHHh
Q 021221 135 GFPTLFLL-NSS-MRVRYHG-SRTLDSLVAFYSDV 166 (316)
Q Consensus 135 ~~Pti~l~-~g~-~~~~~~G-~~~~~~l~~fi~~~ 166 (316)
++||+++| +|. ....|.| .++.++|.+||+..
T Consensus 422 ~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 422 SFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 99999999 543 5678875 79999999999864
No 57
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.63 E-value=2.6e-15 Score=118.34 Aligned_cols=89 Identities=19% Similarity=0.269 Sum_probs=75.7
Q ss_pred cCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEE-eCcee--EEEeCCCC
Q 021221 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMR--VRYHGSRT 155 (316)
Q Consensus 79 ~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g~~~--~~~~G~~~ 155 (316)
..+..++|.|||+||++|+.+.|.++++++.++. ..+...|.+++++++++|+|.++||+++| +|+.. .+|.|..+
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~-i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~ 98 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDK-LKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPA 98 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCc-eEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCc
Confidence 4567799999999999999999999999998844 55666677889999999999999999999 55433 37899999
Q ss_pred HHHHHHHHHHhhC
Q 021221 156 LDSLVAFYSDVTA 168 (316)
Q Consensus 156 ~~~l~~fi~~~~~ 168 (316)
..+|.++|+..+.
T Consensus 99 ~~el~~~i~~i~~ 111 (113)
T cd02975 99 GYEFASLIEDIVR 111 (113)
T ss_pred hHHHHHHHHHHHh
Confidence 9999999998764
No 58
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.63 E-value=4.8e-15 Score=143.74 Aligned_cols=132 Identities=23% Similarity=0.385 Sum_probs=108.0
Q ss_pred CCCchhHHHHHHhhhcCCCcccc------CCCCCcceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHH
Q 021221 30 LCPTESVTDSIFRFQDSFCPISC------NDFQDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSF 103 (316)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~ 103 (316)
..+.+.+.+|+..+..|+..|.. +..+.++..+++++ |++. +.+.+++++|+|||+||++|+.+.|.+
T Consensus 313 ~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~--f~~~----v~~~~~~vlv~f~a~wC~~C~~~~p~~ 386 (462)
T TIGR01130 313 EFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKN--FDEI----VLDETKDVLVEFYAPWCGHCKNLAPIY 386 (462)
T ss_pred CCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcC--HHHH----hccCCCeEEEEEECCCCHhHHHHHHHH
Confidence 35567899999999999987643 22345788889988 6655 667899999999999999999999999
Q ss_pred HHHHHHcCC---CcEEEEEeCCCChhhHhhcCCCccceEEEE-eCce--eEEEeCCCCHHHHHHHHHHhhCC
Q 021221 104 SVLSSLYSS---IPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSM--RVRYHGSRTLDSLVAFYSDVTAS 169 (316)
Q Consensus 104 ~~la~~~~~---~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g~~--~~~~~G~~~~~~l~~fi~~~~~~ 169 (316)
+++++.+.+ ...++..|++.+ ++.. ++|+++||+++| +|+. +.+|.|.++.++|.+||.++...
T Consensus 387 ~~~~~~~~~~~~~i~~~~id~~~n-~~~~-~~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~ 456 (462)
T TIGR01130 387 EELAEKYKDAESDVVIAKMDATAN-DVPP-FEVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATF 456 (462)
T ss_pred HHHHHHhhcCCCcEEEEEEECCCC-ccCC-CCccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCCC
Confidence 999999987 466777787654 3444 999999999999 5543 47899999999999999998763
No 59
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.63 E-value=2.7e-15 Score=143.89 Aligned_cols=105 Identities=22% Similarity=0.412 Sum_probs=82.5
Q ss_pred eEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCC-cEEEEEeCCCCh-hhH-hhcCCCcc
Q 021221 60 GVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSI-PHFAIEESAIRP-SIL-SKYGVHGF 136 (316)
Q Consensus 60 ~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~-~~v~~~~~~~~~-~l~-~~~~I~~~ 136 (316)
.+++.+..||++.+. +.+.++++||+||||||++|+.|.|.|+++++.|.+. ..+..+|++.+. .++ ++|+|+++
T Consensus 352 ~Vv~L~~~nf~~~v~--~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~ 429 (463)
T TIGR00424 352 NVVSLSRPGIENLLK--LEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSF 429 (463)
T ss_pred CeEECCHHHHHHHHh--hhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCcc
Confidence 344555555777621 1367899999999999999999999999999999763 566666776543 454 78999999
Q ss_pred ceEEEE-eCc-eeEEEe-CCCCHHHHHHHHHHh
Q 021221 137 PTLFLL-NSS-MRVRYH-GSRTLDSLVAFYSDV 166 (316)
Q Consensus 137 Pti~l~-~g~-~~~~~~-G~~~~~~l~~fi~~~ 166 (316)
||+++| +|. ....|. |.++.+.|..||+..
T Consensus 430 PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 430 PTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred ceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 999999 554 467897 589999999999853
No 60
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2e-15 Score=130.22 Aligned_cols=105 Identities=22% Similarity=0.353 Sum_probs=86.7
Q ss_pred ceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccce
Q 021221 59 VGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPT 138 (316)
Q Consensus 59 v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pt 138 (316)
|.++.++. +|+.. +-....+.++|+|+|+|||+|++++|.|..++++|++.+++.+ |.++-+..+..+||...||
T Consensus 3 Vi~v~~d~-df~~~---ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkV-dVd~c~~taa~~gV~amPT 77 (288)
T KOG0908|consen 3 VIVVNSDS-DFQRE---LSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKV-DVDECRGTAATNGVNAMPT 77 (288)
T ss_pred eEEecCcH-HHHHh---hhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEE-eHHHhhchhhhcCcccCce
Confidence 44444433 35554 3445778999999999999999999999999999999776665 4556688999999999999
Q ss_pred EEEE-eCceeEEEeCCCCHHHHHHHHHHhhCC
Q 021221 139 LFLL-NSSMRVRYHGSRTLDSLVAFYSDVTAS 169 (316)
Q Consensus 139 i~l~-~g~~~~~~~G~~~~~~l~~fi~~~~~~ 169 (316)
+++| ||..+..+.|. +...|.+.|.++...
T Consensus 78 Fiff~ng~kid~~qGA-d~~gLe~kv~~~~st 108 (288)
T KOG0908|consen 78 FIFFRNGVKIDQIQGA-DASGLEEKVAKYAST 108 (288)
T ss_pred EEEEecCeEeeeecCC-CHHHHHHHHHHHhcc
Confidence 9999 99999999987 888999999998773
No 61
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.62 E-value=1.2e-14 Score=124.66 Aligned_cols=88 Identities=22% Similarity=0.271 Sum_probs=70.2
Q ss_pred cCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCC----------------------CChhhHhhcCCCcc
Q 021221 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESA----------------------IRPSILSKYGVHGF 136 (316)
Q Consensus 79 ~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~----------------------~~~~l~~~~~I~~~ 136 (316)
..+++++|+|||+||++|+++.|.++++.+. ++.++.+...+ ....+...|||.++
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~ 143 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA 143 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence 3689999999999999999999999999764 44445543111 12235668999999
Q ss_pred ceEEEE--eCceeEEEeCCCCHHHHHHHHHHhhC
Q 021221 137 PTLFLL--NSSMRVRYHGSRTLDSLVAFYSDVTA 168 (316)
Q Consensus 137 Pti~l~--~g~~~~~~~G~~~~~~l~~fi~~~~~ 168 (316)
|+++++ +|+.+.++.|..+.+++.+.|+..+.
T Consensus 144 P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 144 PETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred CeEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 998888 78888999999999999999888764
No 62
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.60 E-value=6.5e-15 Score=118.04 Aligned_cols=90 Identities=18% Similarity=0.290 Sum_probs=71.6
Q ss_pred ccCC-CeEEEEEEcCCChHHHhhhHHHH---HHHHHcCC-CcEEEEEeCCC-------------ChhhHhhcCCCccceE
Q 021221 78 KNSH-EYVAVLFYASWCPFSRNFRPSFS---VLSSLYSS-IPHFAIEESAI-------------RPSILSKYGVHGFPTL 139 (316)
Q Consensus 78 ~~~~-~~vlV~Fya~WC~~Ck~~~p~~~---~la~~~~~-~~~v~~~~~~~-------------~~~l~~~~~I~~~Pti 139 (316)
++.+ ++++|.|||+||++|+++.|.+. ++.+.+.+ +..+.+ +.+. ..+++.+|+|+++||+
T Consensus 10 ~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i-~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~ 88 (125)
T cd02951 10 AADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYI-NIDGDKEVTDFDGEALSEKELARKYRVRFTPTV 88 (125)
T ss_pred HHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEE-EccCCceeeccCCCCccHHHHHHHcCCccccEE
Confidence 3566 99999999999999999999885 56555544 333333 3332 3689999999999999
Q ss_pred EEE--e-CceeEEEeCCCCHHHHHHHHHHhhC
Q 021221 140 FLL--N-SSMRVRYHGSRTLDSLVAFYSDVTA 168 (316)
Q Consensus 140 ~l~--~-g~~~~~~~G~~~~~~l~~fi~~~~~ 168 (316)
++| + |+.+.++.|..+.+.+.++|+....
T Consensus 89 ~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 89 IFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred EEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 999 4 5788899999999999999988765
No 63
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.59 E-value=1.2e-14 Score=123.23 Aligned_cols=83 Identities=13% Similarity=0.243 Sum_probs=68.3
Q ss_pred CCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEE-eCceeEEEeCC------
Q 021221 81 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGS------ 153 (316)
Q Consensus 81 ~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g~~~~~~~G~------ 153 (316)
+.+++|+||++||++|+.+.|.+++|++.|+.+.++. ++.+.. .++.+|+|.++||+++| +|+.+.++.|.
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~k-Vd~d~~-~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g~ 160 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCK-IRASAT-GASDEFDTDALPALLVYKGGELIGNFVRVTEDLGE 160 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEE-Eeccch-hhHHhCCCCCCCEEEEEECCEEEEEEechHHhcCC
Confidence 3599999999999999999999999999998755444 455555 89999999999999999 88888777653
Q ss_pred -CCHHHHHHHHHH
Q 021221 154 -RTLDSLVAFYSD 165 (316)
Q Consensus 154 -~~~~~l~~fi~~ 165 (316)
.+.+.|..++.+
T Consensus 161 ~f~~~~le~~L~~ 173 (175)
T cd02987 161 DFDAEDLESFLVE 173 (175)
T ss_pred CCCHHHHHHHHHh
Confidence 356667666654
No 64
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.58 E-value=2.7e-14 Score=106.56 Aligned_cols=84 Identities=26% Similarity=0.491 Sum_probs=73.6
Q ss_pred CCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEE-eCceeEEEeCCCCHHH
Q 021221 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTLDS 158 (316)
Q Consensus 80 ~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g~~~~~~~G~~~~~~ 158 (316)
.+++++|.||++||++|+.+.|.++++++..++ ..+...+++.+++++++|++.++||+++| +|+.+..+.|..+.+.
T Consensus 9 ~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~ 87 (93)
T cd02947 9 SAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPK-VKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRVVGADPKEE 87 (93)
T ss_pred cCCcEEEEEECCCChhHHHhhHHHHHHHHHCCC-ceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEEecCCCHHH
Confidence 448999999999999999999999999998444 55555577788999999999999999999 8888899999999899
Q ss_pred HHHHHH
Q 021221 159 LVAFYS 164 (316)
Q Consensus 159 l~~fi~ 164 (316)
|.++|+
T Consensus 88 l~~~i~ 93 (93)
T cd02947 88 LEEFLE 93 (93)
T ss_pred HHHHhC
Confidence 998873
No 65
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.57 E-value=4.3e-15 Score=131.41 Aligned_cols=91 Identities=29% Similarity=0.572 Sum_probs=83.1
Q ss_pred ccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHc----C-CCcEEEEEeCCCChhhHhhcCCCccceEEEE-eCceeE-EE
Q 021221 78 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLY----S-SIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRV-RY 150 (316)
Q Consensus 78 ~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~----~-~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g~~~~-~~ 150 (316)
.+....|+|.|||+||++++.++|+|++.++.+ + +.+..+.+||+.+.+|+.+|.|..|||+.+| ||.... .|
T Consensus 10 l~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~~~rEY 89 (375)
T KOG0912|consen 10 LDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEMMKREY 89 (375)
T ss_pred hccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccchhhhhh
Confidence 356899999999999999999999999988764 4 4788899999999999999999999999999 888776 89
Q ss_pred eCCCCHHHHHHHHHHhhC
Q 021221 151 HGSRTLDSLVAFYSDVTA 168 (316)
Q Consensus 151 ~G~~~~~~l~~fi~~~~~ 168 (316)
.|.|+.+.|.+||++...
T Consensus 90 Rg~RsVeaL~efi~kq~s 107 (375)
T KOG0912|consen 90 RGQRSVEALIEFIEKQLS 107 (375)
T ss_pred ccchhHHHHHHHHHHHhc
Confidence 999999999999999876
No 66
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.56 E-value=1.2e-13 Score=116.65 Aligned_cols=104 Identities=20% Similarity=0.382 Sum_probs=84.0
Q ss_pred CCcceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC--CcEEEEEe-------------
Q 021221 56 QDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEE------------- 120 (316)
Q Consensus 56 ~~~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~--~~~v~~~~------------- 120 (316)
+..+..++|+.+++.+. .+++++|+||++||++|+...|.+.++.++|++ +..+.+.-
T Consensus 43 ~~~~~~~~g~~~~l~~~-------~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~ 115 (173)
T PRK03147 43 NFVLTDLEGKKIELKDL-------KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNR 115 (173)
T ss_pred CcEeecCCCCEEeHHHc-------CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHH
Confidence 44556677888777666 578999999999999999999999999999875 34444431
Q ss_pred --------CCCChhhHhhcCCCccceEEEE--eCceeEEEeCCCCHHHHHHHHHHh
Q 021221 121 --------SAIRPSILSKYGVHGFPTLFLL--NSSMRVRYHGSRTLDSLVAFYSDV 166 (316)
Q Consensus 121 --------~~~~~~l~~~~~I~~~Pti~l~--~g~~~~~~~G~~~~~~l~~fi~~~ 166 (316)
++.+..+++.|||.++|+++++ +|+.+..+.|..+.+++.+++++.
T Consensus 116 ~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 116 YGLTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred hCCCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 1234678899999999999999 677777889999999999998864
No 67
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.55 E-value=8.4e-14 Score=135.26 Aligned_cols=87 Identities=13% Similarity=0.237 Sum_probs=73.4
Q ss_pred cCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcC--CCcEEEEE---------------------------eCCCChhhHh
Q 021221 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYS--SIPHFAIE---------------------------ESAIRPSILS 129 (316)
Q Consensus 79 ~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~--~~~~v~~~---------------------------~~~~~~~l~~ 129 (316)
+++++++|+|||+||++|+++.|.+++++++++ ++.++.+. ..|.+..+.+
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak 133 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQ 133 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHH
Confidence 378999999999999999999999999999886 34333331 2234567899
Q ss_pred hcCCCccceEEEE--eCceeEEEeCCCCHHHHHHHHHH
Q 021221 130 KYGVHGFPTLFLL--NSSMRVRYHGSRTLDSLVAFYSD 165 (316)
Q Consensus 130 ~~~I~~~Pti~l~--~g~~~~~~~G~~~~~~l~~fi~~ 165 (316)
.|+|.++||++++ +|+.+.++.|..+.++|.++|+.
T Consensus 134 ~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 134 SLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred HcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 9999999999888 78888999999999999999994
No 68
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.55 E-value=4.7e-14 Score=112.64 Aligned_cols=84 Identities=19% Similarity=0.286 Sum_probs=64.8
Q ss_pred cCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCC-----------hhhHhhcC----CCccceEEEE-
Q 021221 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIR-----------PSILSKYG----VHGFPTLFLL- 142 (316)
Q Consensus 79 ~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~-----------~~l~~~~~----I~~~Pti~l~- 142 (316)
++++.++|+|+++|||+|+.+.|.++++++..+ . .+...|.+.+ .++.++|+ |.++||+++|
T Consensus 21 ~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~-~-~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k 98 (122)
T TIGR01295 21 DKKETATFFIGRKTCPYCRKFSGTLSGVVAQTK-A-PIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHIT 98 (122)
T ss_pred HcCCcEEEEEECCCChhHHHHhHHHHHHHHhcC-C-cEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEe
Confidence 467889999999999999999999999999843 2 2333333322 24556665 5569999999
Q ss_pred eCceeEEEeC-CCCHHHHHHHHH
Q 021221 143 NSSMRVRYHG-SRTLDSLVAFYS 164 (316)
Q Consensus 143 ~g~~~~~~~G-~~~~~~l~~fi~ 164 (316)
+|+.+.+..| ..+.++|.+|+.
T Consensus 99 ~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 99 DGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCeEEEEEeCCCCCHHHHHHHhh
Confidence 8999999999 557999998874
No 69
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.53 E-value=7.5e-14 Score=103.06 Aligned_cols=80 Identities=18% Similarity=0.311 Sum_probs=69.9
Q ss_pred EEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEEeCceeEEEeCCCCHHHHHHHH
Q 021221 84 VAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFY 163 (316)
Q Consensus 84 vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~~g~~~~~~~G~~~~~~l~~fi 163 (316)
.+..||++||++|+.+.|.++++++.++....+..+|.+++++++++|||.++||+++ +|+ .++.|..+.++|.+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~-~g~--~~~~G~~~~~~l~~~l 78 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI-NGD--VEFIGAPTKEELVEAI 78 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE-CCE--EEEecCCCHHHHHHHH
Confidence 4678999999999999999999999987656666667888999999999999999986 775 4788999999999998
Q ss_pred HHh
Q 021221 164 SDV 166 (316)
Q Consensus 164 ~~~ 166 (316)
++.
T Consensus 79 ~~~ 81 (82)
T TIGR00411 79 KKR 81 (82)
T ss_pred Hhh
Confidence 864
No 70
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.50 E-value=5.7e-13 Score=112.95 Aligned_cols=88 Identities=22% Similarity=0.307 Sum_probs=71.1
Q ss_pred cCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEE----------------------eCCCChhhHhhcCCCcc
Q 021221 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIE----------------------ESAIRPSILSKYGVHGF 136 (316)
Q Consensus 79 ~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~----------------------~~~~~~~l~~~~~I~~~ 136 (316)
.++++++|+||++||++|+++.|.++++.+. +...+.+. ..|.+..+.+.|++.++
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~ 138 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA 138 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence 3679999999999999999999999999875 23333332 12334567888999999
Q ss_pred ceEEEE--eCceeEEEeCCCCHHHHHHHHHHhhC
Q 021221 137 PTLFLL--NSSMRVRYHGSRTLDSLVAFYSDVTA 168 (316)
Q Consensus 137 Pti~l~--~g~~~~~~~G~~~~~~l~~fi~~~~~ 168 (316)
|+++++ +|+.+.++.|..+.+++.++++++++
T Consensus 139 P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 139 PETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred CeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 988888 78888899999999999999998764
No 71
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.50 E-value=1.5e-13 Score=118.03 Aligned_cols=101 Identities=19% Similarity=0.280 Sum_probs=75.5
Q ss_pred CCcceEEeCCcccHHHHHhHHhcc-CCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCC
Q 021221 56 QDIVGVIEGDEVSLQMALNMVHKN-SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVH 134 (316)
Q Consensus 56 ~~~v~~l~~~~~~~~~~~~~i~~~-~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~ 134 (316)
.+.+..++..+ |.+. +... .+.+|+|+||++||++|+.|.|.|++|+..|+.+.++.+ +.+. ...+|+|.
T Consensus 81 ~G~v~eis~~~--f~~e---V~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI-~ad~---~~~~~~i~ 151 (192)
T cd02988 81 FGEVYEISKPD--YVRE---VTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKI-ISTQ---CIPNYPDK 151 (192)
T ss_pred CCeEEEeCHHH--HHHH---HHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEE-EhHH---hHhhCCCC
Confidence 35555555544 5544 2222 346999999999999999999999999999988655555 4432 36899999
Q ss_pred ccceEEEE-eCceeEEEeCC-------CCHHHHHHHHHH
Q 021221 135 GFPTLFLL-NSSMRVRYHGS-------RTLDSLVAFYSD 165 (316)
Q Consensus 135 ~~Pti~l~-~g~~~~~~~G~-------~~~~~l~~fi~~ 165 (316)
++||+++| +|+.+.++.|. .+.++|..++.+
T Consensus 152 ~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 152 NLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred CCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 99999999 89888888873 466777766654
No 72
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.49 E-value=2.9e-13 Score=107.02 Aligned_cols=94 Identities=18% Similarity=0.265 Sum_probs=65.9
Q ss_pred HHHHHhHHhccCCCeEEEEEEc-------CCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCC-------ChhhHhhcCCC
Q 021221 69 LQMALNMVHKNSHEYVAVLFYA-------SWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAI-------RPSILSKYGVH 134 (316)
Q Consensus 69 ~~~~~~~i~~~~~~~vlV~Fya-------~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~-------~~~l~~~~~I~ 134 (316)
++++.+.+...++++++|+||| +|||+|+.+.|.++++++.+++...+..+|.+. +.++..+|+|.
T Consensus 9 ~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~ 88 (119)
T cd02952 9 YEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLT 88 (119)
T ss_pred HHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcc
Confidence 4444333433457899999999 999999999999999999998533334344433 56899999999
Q ss_pred -ccceEEEE-eCceeEEEeCCCCHHHHHHHH
Q 021221 135 -GFPTLFLL-NSSMRVRYHGSRTLDSLVAFY 163 (316)
Q Consensus 135 -~~Pti~l~-~g~~~~~~~G~~~~~~l~~fi 163 (316)
++||+++| +|+.+.... =.+.+.+..|+
T Consensus 89 ~~iPT~~~~~~~~~l~~~~-c~~~~~~~~~~ 118 (119)
T cd02952 89 TGVPTLLRWKTPQRLVEDE-CLQADLVEMFF 118 (119)
T ss_pred cCCCEEEEEcCCceecchh-hcCHHHHHHhh
Confidence 99999999 443332211 12555555543
No 73
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.49 E-value=5.8e-14 Score=111.32 Aligned_cols=99 Identities=15% Similarity=0.316 Sum_probs=69.6
Q ss_pred HHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCC-hhhHhhcCCCc--cceEEEE--e
Q 021221 69 LQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIR-PSILSKYGVHG--FPTLFLL--N 143 (316)
Q Consensus 69 ~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~-~~l~~~~~I~~--~Pti~l~--~ 143 (316)
+++++... ..++++++|+|||+||++|+.+.|.+.+..........+...+.+.+ ..+.+.|++.+ +||+++| +
T Consensus 8 ~~~al~~A-~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~ 86 (117)
T cd02959 8 LEDGIKEA-KDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPS 86 (117)
T ss_pred HHHHHHHH-HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCC
Confidence 66665433 46789999999999999999999999997765432112222232222 24567899987 9999999 6
Q ss_pred CceeE---EEeCCCCHHHHHHHHHHhhC
Q 021221 144 SSMRV---RYHGSRTLDSLVAFYSDVTA 168 (316)
Q Consensus 144 g~~~~---~~~G~~~~~~l~~fi~~~~~ 168 (316)
|+.+. ...|..+.+.+.+.++..++
T Consensus 87 Gk~~~~~~~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 87 GDVHPEIINKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred CCCchhhccCCCCccccccCCCHHHHHh
Confidence 77765 45567777777777766665
No 74
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.48 E-value=1.5e-13 Score=106.02 Aligned_cols=86 Identities=19% Similarity=0.247 Sum_probs=75.1
Q ss_pred CCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCC--ccceEEEE-e--CceeEEEeCCCC
Q 021221 81 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVH--GFPTLFLL-N--SSMRVRYHGSRT 155 (316)
Q Consensus 81 ~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~--~~Pti~l~-~--g~~~~~~~G~~~ 155 (316)
++++++.||++||++|+.+.|.+++++++|.+...+..+|.++++++++.|||. ++|+++++ + |+......|..+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 689999999999999999999999999999988888888998899999999999 99999999 4 444333335569
Q ss_pred HHHHHHHHHHh
Q 021221 156 LDSLVAFYSDV 166 (316)
Q Consensus 156 ~~~l~~fi~~~ 166 (316)
.++|.+|+++.
T Consensus 92 ~~~l~~fi~~~ 102 (103)
T cd02982 92 AESLEEFVEDF 102 (103)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 75
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.48 E-value=5.8e-13 Score=112.43 Aligned_cols=101 Identities=21% Similarity=0.331 Sum_probs=77.4
Q ss_pred CCcceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCC------------C
Q 021221 56 QDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESA------------I 123 (316)
Q Consensus 56 ~~~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~------------~ 123 (316)
+......+|+.+++.+. + +|.||++||++|+++.|.+++++++|+ +..+++.-.+ .
T Consensus 55 ~~~f~l~dG~~v~lsd~---------~--lV~FwaswCp~C~~e~P~L~~l~~~~g-~~Vi~Vs~D~~~~~~fPv~~dd~ 122 (181)
T PRK13728 55 PRWFRLSNGRQVNLADW---------K--VVLFMQGHCPYCHQFDPVLKQLAQQYG-FSVFPYTLDGQGDTAFPEALPAP 122 (181)
T ss_pred CCccCCCCCCEeehhHc---------e--EEEEECCCCHhHHHHHHHHHHHHHHcC-CEEEEEEeCCCCCCCCceEecCc
Confidence 33345568888887777 2 778999999999999999999999984 4444443111 1
Q ss_pred ChhhHhhcCC--CccceEEEE--eCcee-EEEeCCCCHHHHHHHHHHhhC
Q 021221 124 RPSILSKYGV--HGFPTLFLL--NSSMR-VRYHGSRTLDSLVAFYSDVTA 168 (316)
Q Consensus 124 ~~~l~~~~~I--~~~Pti~l~--~g~~~-~~~~G~~~~~~l~~fi~~~~~ 168 (316)
...+...||+ .++||.+++ +|+.+ ..+.|..+.++|.+.|++.+.
T Consensus 123 ~~~~~~~~g~~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I~~ll~ 172 (181)
T PRK13728 123 PDVMQTFFPNIPVATPTTFLVNVNTLEALPLLQGATDAAGFMARMDTVLQ 172 (181)
T ss_pred hhHHHHHhCCCCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHHHHHHh
Confidence 2346778995 699999999 66665 468999999999999998876
No 76
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=6e-14 Score=133.84 Aligned_cols=115 Identities=20% Similarity=0.287 Sum_probs=88.9
Q ss_pred CccccCCCCCcceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcC---CCcEEEEEeCC--
Q 021221 48 CPISCNDFQDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYS---SIPHFAIEESA-- 122 (316)
Q Consensus 48 ~~~~~~~~~~~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~---~~~~v~~~~~~-- 122 (316)
..|.....++|+..++.++ |..+ +..+.+..+|+||++|||+|++++|.|++++++.. .++.++.+||.
T Consensus 30 ~~ptLy~~~D~ii~Ld~~t--f~~~----v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~ 103 (606)
T KOG1731|consen 30 SNPTLYSPDDPIIELDVDT--FNAA----VFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADE 103 (606)
T ss_pred CCCcccCCCCCeEEeehhh--hHHH----hcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccch
Confidence 3344444468899999999 5555 66677899999999999999999999999998754 48888888885
Q ss_pred CChhhHhhcCCCccceEEEE--e---CceeEEEeCCCCHHHHHHHHHHhhC
Q 021221 123 IRPSILSKYGVHGFPTLFLL--N---SSMRVRYHGSRTLDSLVAFYSDVTA 168 (316)
Q Consensus 123 ~~~~l~~~~~I~~~Pti~l~--~---g~~~~~~~G~~~~~~l~~fi~~~~~ 168 (316)
.|..+|++|+|.+|||+.+| + +..-..+.|+....++.+.+.+.+.
T Consensus 104 ~N~~lCRef~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la 154 (606)
T KOG1731|consen 104 ENVKLCREFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLA 154 (606)
T ss_pred hhhhhHhhcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHH
Confidence 56789999999999999999 2 2222455666666777776665543
No 77
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.46 E-value=1.6e-12 Score=107.58 Aligned_cols=86 Identities=22% Similarity=0.507 Sum_probs=64.0
Q ss_pred CCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEE--EeCC---------CChhhH-hhc---CCCccceEEEE--
Q 021221 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAI--EESA---------IRPSIL-SKY---GVHGFPTLFLL-- 142 (316)
Q Consensus 80 ~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~--~~~~---------~~~~l~-~~~---~I~~~Pti~l~-- 142 (316)
.+++.+|+|||+||++|+++.|.+++++++|+ ..++.+ ++.. ...+.. ..| +|.++||++++
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG-LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC-CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 34667999999999999999999999999984 334333 2211 012333 345 89999999999
Q ss_pred eCcee-EEEeCCCCHHHHHHHHHHh
Q 021221 143 NSSMR-VRYHGSRTLDSLVAFYSDV 166 (316)
Q Consensus 143 ~g~~~-~~~~G~~~~~~l~~fi~~~ 166 (316)
+|+.+ ..+.|..+.+++.+.+++.
T Consensus 128 ~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 128 NTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCCEEEEEeecccCHHHHHHHHHHh
Confidence 55654 4688999999999888764
No 78
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.43 E-value=1e-12 Score=105.35 Aligned_cols=79 Identities=23% Similarity=0.368 Sum_probs=64.1
Q ss_pred CCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEE----------------------eCCCChhhHhhcCCCccc
Q 021221 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIE----------------------ESAIRPSILSKYGVHGFP 137 (316)
Q Consensus 80 ~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~----------------------~~~~~~~l~~~~~I~~~P 137 (316)
.+++++|+||++||++|+.+.|.++++.+.++ +..+.+. ..|.+..+++.|+|.++|
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~-~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P 102 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR-VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVP 102 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC-cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCC
Confidence 57899999999999999999999999998873 3333332 133456788999999999
Q ss_pred eEEEE--eCceeEEEeCCCCHHHH
Q 021221 138 TLFLL--NSSMRVRYHGSRTLDSL 159 (316)
Q Consensus 138 ti~l~--~g~~~~~~~G~~~~~~l 159 (316)
+.+++ +|+.+.++.|..+.+.|
T Consensus 103 ~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 103 ETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred eEEEECCCceEEEEEeccCChHhc
Confidence 88877 78888899999887754
No 79
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.39 E-value=2.7e-12 Score=102.16 Aligned_cols=96 Identities=22% Similarity=0.401 Sum_probs=72.7
Q ss_pred ceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeC-----------------
Q 021221 59 VGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEES----------------- 121 (316)
Q Consensus 59 v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~----------------- 121 (316)
+..++|+.+++.+. .+++++|.||++||++|+.+.|.+.++++.+. +..+..++.
T Consensus 5 l~~~~g~~~~~~~~-------~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~ 76 (123)
T cd03011 5 ATTLDGEQFDLESL-------SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFP 76 (123)
T ss_pred eecCCCCEeeHHHh-------CCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCcc
Confidence 34456666555554 56899999999999999999999999988743 222222221
Q ss_pred ---CCChhhHhhcCCCccceEEEE-eCceeEEEeCCCCHHHHHHH
Q 021221 122 ---AIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTLDSLVAF 162 (316)
Q Consensus 122 ---~~~~~l~~~~~I~~~Pti~l~-~g~~~~~~~G~~~~~~l~~f 162 (316)
+.+..++++|+|.++||++++ +++...++.|..+.++|.+-
T Consensus 77 ~~~d~~~~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 77 VINDPDGVISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred EEECCCcHHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHhh
Confidence 345679999999999999999 45577788899999988653
No 80
>PHA02125 thioredoxin-like protein
Probab=99.38 E-value=3.6e-12 Score=92.85 Aligned_cols=70 Identities=23% Similarity=0.410 Sum_probs=55.0
Q ss_pred EEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEEeCceeEEEeCC-CCHHHHHHH
Q 021221 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGS-RTLDSLVAF 162 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~~g~~~~~~~G~-~~~~~l~~f 162 (316)
+++|||+||++|+.+.|.++++.- ..+.+ |.+++++++++|+|.++||++ +|+.+.++.|. .+..+|.+-
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~~-----~~~~v-d~~~~~~l~~~~~v~~~PT~~--~g~~~~~~~G~~~~~~~l~~~ 72 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVEY-----TYVDV-DTDEGVELTAKHHIRSLPTLV--NTSTLDRFTGVPRNVAELKEK 72 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHhh-----eEEee-eCCCCHHHHHHcCCceeCeEE--CCEEEEEEeCCCCcHHHHHHH
Confidence 789999999999999999987642 23333 566789999999999999987 67777888885 344555543
No 81
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.38 E-value=1.3e-12 Score=102.34 Aligned_cols=86 Identities=19% Similarity=0.404 Sum_probs=60.3
Q ss_pred ccCCCeEEEEEEcCCChHHHhhhHHHHHHH---HHcCCCcEEEEEeCCC--------------------ChhhHhhcCCC
Q 021221 78 KNSHEYVAVLFYASWCPFSRNFRPSFSVLS---SLYSSIPHFAIEESAI--------------------RPSILSKYGVH 134 (316)
Q Consensus 78 ~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la---~~~~~~~~v~~~~~~~--------------------~~~l~~~~~I~ 134 (316)
+.++++++|.|++|||++|+++.+.+.+.. ..+.+...+...+.+. +.++.++|||+
T Consensus 2 ~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 81 (112)
T PF13098_consen 2 KGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN 81 (112)
T ss_dssp ETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC
Confidence 357899999999999999999999998644 3343222222222221 24689999999
Q ss_pred ccceEEEE--eCceeEEEeCCCCHHHHHHHH
Q 021221 135 GFPTLFLL--NSSMRVRYHGSRTLDSLVAFY 163 (316)
Q Consensus 135 ~~Pti~l~--~g~~~~~~~G~~~~~~l~~fi 163 (316)
++||++++ +|+.+.++.|..+.++|.+++
T Consensus 82 gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 82 GTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred ccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 99999999 588888999999999998875
No 82
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.37 E-value=2.5e-12 Score=93.94 Aligned_cols=73 Identities=10% Similarity=0.136 Sum_probs=57.5
Q ss_pred EEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEEeCceeEEEeCC-CCHHHHHHHH
Q 021221 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGS-RTLDSLVAFY 163 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~~g~~~~~~~G~-~~~~~l~~fi 163 (316)
-|.||++||++|+.+.|.+++++++++....+..++ +.+.+.+|||.++||+++ ||+.+ +.|. .+.++|.+++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i-~G~~~--~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV-DGELV--IMGKIPSKEEIKEIL 75 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE-CCEEE--EEeccCCHHHHHHHh
Confidence 378999999999999999999999987643333333 355678899999999999 88766 7775 3557877765
No 83
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.34 E-value=4.7e-12 Score=125.94 Aligned_cols=98 Identities=20% Similarity=0.357 Sum_probs=76.1
Q ss_pred HHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHH---HHHHHHcCCCcEEEEEeC---CCChhhHhhcCCCccceEEEE
Q 021221 69 LQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSF---SVLSSLYSSIPHFAIEES---AIRPSILSKYGVHGFPTLFLL 142 (316)
Q Consensus 69 ~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~---~~la~~~~~~~~v~~~~~---~~~~~l~~~~~I~~~Pti~l~ 142 (316)
+++.++.. ..++|+++|+|||+||++|+.+.|.. +++.+.+++...+.+|-. +++.+++++|+|.++||+++|
T Consensus 463 l~~~l~~a-~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~ 541 (571)
T PRK00293 463 LDQALAEA-KGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVLGLPTILFF 541 (571)
T ss_pred HHHHHHHH-HhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEE
Confidence 55543322 34679999999999999999999875 678888877655555422 134689999999999999999
Q ss_pred --eCce--eEEEeCCCCHHHHHHHHHHhh
Q 021221 143 --NSSM--RVRYHGSRTLDSLVAFYSDVT 167 (316)
Q Consensus 143 --~g~~--~~~~~G~~~~~~l~~fi~~~~ 167 (316)
+|++ ..++.|..+.+++.+++++..
T Consensus 542 ~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 542 DAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred CCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 5676 368889999999999998753
No 84
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.34 E-value=5.4e-12 Score=101.75 Aligned_cols=79 Identities=24% Similarity=0.485 Sum_probs=59.4
Q ss_pred EEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC----CcEEEEE-eCC-------------
Q 021221 61 VIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS----IPHFAIE-ESA------------- 122 (316)
Q Consensus 61 ~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~----~~~v~~~-~~~------------- 122 (316)
..+|+.+++.+. .+++++|+||++||++|+++.|.++++.+++.+ +..+.+. |.+
T Consensus 5 ~~~G~~v~l~~~-------~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~ 77 (131)
T cd03009 5 RNDGGKVPVSSL-------EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPW 77 (131)
T ss_pred ccCCCCccHHHh-------CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCe
Confidence 456777777776 678999999999999999999999999887753 2233322 111
Q ss_pred ---------CChhhHhhcCCCccceEEEE--eCce
Q 021221 123 ---------IRPSILSKYGVHGFPTLFLL--NSSM 146 (316)
Q Consensus 123 ---------~~~~l~~~~~I~~~Pti~l~--~g~~ 146 (316)
....++++|+|.++||++++ +|+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i 112 (131)
T cd03009 78 LAVPFSDRERRSRLNRTFKIEGIPTLIILDADGEV 112 (131)
T ss_pred eEcccCCHHHHHHHHHHcCCCCCCEEEEECCCCCE
Confidence 11467889999999999999 4543
No 85
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.32 E-value=7.6e-12 Score=101.20 Aligned_cols=73 Identities=25% Similarity=0.490 Sum_probs=55.5
Q ss_pred EeCC-cccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC----CcEEEEEeCCCC------------
Q 021221 62 IEGD-EVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS----IPHFAIEESAIR------------ 124 (316)
Q Consensus 62 l~~~-~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~----~~~v~~~~~~~~------------ 124 (316)
++++ .+++++. .+++++|+||++||++|+.+.|.++++++.+.+ +..+.+ +.+..
T Consensus 4 ~~~~~~v~l~~~-------~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~V-s~d~~~~~~~~~~~~~~ 75 (132)
T cd02964 4 LDGEGVVPVSAL-------EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFV-SRDRSEESFNEYFSEMP 75 (132)
T ss_pred ccCCccccHHHh-------CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEE-ecCCCHHHHHHHHhcCC
Confidence 4555 6667776 689999999999999999999999999887764 223333 22211
Q ss_pred -------------hhhHhhcCCCccceEEEE
Q 021221 125 -------------PSILSKYGVHGFPTLFLL 142 (316)
Q Consensus 125 -------------~~l~~~~~I~~~Pti~l~ 142 (316)
..+.+.|+|.++||++++
T Consensus 76 ~~~~~~~~d~~~~~~~~~~~~v~~iPt~~li 106 (132)
T cd02964 76 PWLAVPFEDEELRELLEKQFKVEGIPTLVVL 106 (132)
T ss_pred CeEeeccCcHHHHHHHHHHcCCCCCCEEEEE
Confidence 246678999999999999
No 86
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.32 E-value=1.7e-11 Score=111.04 Aligned_cols=88 Identities=16% Similarity=0.270 Sum_probs=70.0
Q ss_pred CCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEE-eCC---------CChhhHhhcCCCccceEEEE-e-Ccee
Q 021221 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIE-ESA---------IRPSILSKYGVHGFPTLFLL-N-SSMR 147 (316)
Q Consensus 80 ~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~-~~~---------~~~~l~~~~~I~~~Pti~l~-~-g~~~ 147 (316)
.+++++|+|||+||++|+.+.|.+++++++|. +.++.+. |.+ .+..++++|||.++||++++ + |+.+
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v 243 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQF 243 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEE
Confidence 57899999999999999999999999999985 3333332 111 13568999999999999999 3 5555
Q ss_pred E-EEeCCCCHHHHHHHHHHhhC
Q 021221 148 V-RYHGSRTLDSLVAFYSDVTA 168 (316)
Q Consensus 148 ~-~~~G~~~~~~l~~fi~~~~~ 168 (316)
. ...|..+.++|.+.|.....
T Consensus 244 ~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 244 TPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEeCCCCHHHHHHHHHHHhc
Confidence 4 45589999999999987765
No 87
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.32 E-value=3e-11 Score=102.62 Aligned_cols=119 Identities=8% Similarity=0.024 Sum_probs=78.7
Q ss_pred hhcCCCccccCCCCCcceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHH-cCC-----CcEE
Q 021221 43 FQDSFCPISCNDFQDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSL-YSS-----IPHF 116 (316)
Q Consensus 43 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~-~~~-----~~~v 116 (316)
+.-|+..|+..-.+..-.+++++++++...-.. .-.+|+++|.|||+||++|+...|.++++++. ++- ...+
T Consensus 23 ~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~--~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~I 100 (184)
T TIGR01626 23 LQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSA--ELAGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTII 100 (184)
T ss_pred hhcCCcCCceEecCCceEEEcCCcccceeccHH--HcCCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEE
Confidence 355555554422233234456666555554211 12599999999999999999999999999764 321 1222
Q ss_pred EEEeC--------------------------CCChhhHhhcCCCccceE-EEE--eCceeEEEeCCCCHHHHHHHH
Q 021221 117 AIEES--------------------------AIRPSILSKYGVHGFPTL-FLL--NSSMRVRYHGSRTLDSLVAFY 163 (316)
Q Consensus 117 ~~~~~--------------------------~~~~~l~~~~~I~~~Pti-~l~--~g~~~~~~~G~~~~~~l~~fi 163 (316)
+.++. |.+..+...||+.++|+. +++ +|+.+.++.|..+.+++.+.+
T Consensus 101 N~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 101 NADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred ECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 22221 112346778999999888 677 788899999999988887643
No 88
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.30 E-value=8e-12 Score=102.45 Aligned_cols=77 Identities=13% Similarity=0.239 Sum_probs=55.4
Q ss_pred CCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcC---------CCcEEEEEeCCC-----------
Q 021221 64 GDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYS---------SIPHFAIEESAI----------- 123 (316)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~---------~~~~v~~~~~~~----------- 123 (316)
.+..++.++ .+++++|+|||+||++|+++.|.++++.+.+. ++..+.+...+.
T Consensus 15 ~~~~~ls~~-------kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~ 87 (146)
T cd03008 15 TEREIVARL-------ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDM 87 (146)
T ss_pred cccccHHHh-------CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHC
Confidence 344446665 68999999999999999999999999876543 233444431110
Q ss_pred -------------ChhhHhhcCCCccceEEEE--eCcee
Q 021221 124 -------------RPSILSKYGVHGFPTLFLL--NSSMR 147 (316)
Q Consensus 124 -------------~~~l~~~~~I~~~Pti~l~--~g~~~ 147 (316)
...++.+|+|.++||++++ +|+.+
T Consensus 88 ~~~~~~~p~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv 126 (146)
T cd03008 88 PKKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPDGDVL 126 (146)
T ss_pred CCCceeecccchHHHHHHHHcCCCCCCEEEEECCCCcEE
Confidence 1257889999999999999 45444
No 89
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.29 E-value=2.1e-11 Score=106.99 Aligned_cols=82 Identities=16% Similarity=0.275 Sum_probs=67.5
Q ss_pred CCe-EEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEEeCceeEEEeCCCCHHHH
Q 021221 81 HEY-VAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSL 159 (316)
Q Consensus 81 ~~~-vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~~g~~~~~~~G~~~~~~l 159 (316)
+++ +++.||++||++|+.+.|.+++++..++++.+ ...|.+.+++++++|+|.++||++++++.. ++.|..+.++|
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~-~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~--~~~G~~~~~~l 208 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILG-EMIEANENPDLAEKYGVMSVPKIVINKGVE--EFVGAYPEEQF 208 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEE-EEEeCCCCHHHHHHhCCccCCEEEEecCCE--EEECCCCHHHH
Confidence 444 45559999999999999999999998765444 456778899999999999999999983332 38999999999
Q ss_pred HHHHHH
Q 021221 160 VAFYSD 165 (316)
Q Consensus 160 ~~fi~~ 165 (316)
.+++.+
T Consensus 209 ~~~l~~ 214 (215)
T TIGR02187 209 LEYILS 214 (215)
T ss_pred HHHHHh
Confidence 999875
No 90
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.29 E-value=2.6e-11 Score=128.22 Aligned_cols=101 Identities=13% Similarity=0.242 Sum_probs=81.2
Q ss_pred EeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC--CcEEEEE----eC--------------
Q 021221 62 IEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIE----ES-------------- 121 (316)
Q Consensus 62 l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~--~~~v~~~----~~-------------- 121 (316)
++++.+++.+. -.+++++|+|||+||++|+.+.|.++++.++|++ +.++++. |.
T Consensus 407 ~~g~~~~l~~~------lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~ 480 (1057)
T PLN02919 407 LNTAPLQFRRD------LKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRY 480 (1057)
T ss_pred cCCccccchhh------cCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHh
Confidence 56666555433 1689999999999999999999999999999976 3444441 11
Q ss_pred --------CCChhhHhhcCCCccceEEEE--eCceeEEEeCCCCHHHHHHHHHHhhC
Q 021221 122 --------AIRPSILSKYGVHGFPTLFLL--NSSMRVRYHGSRTLDSLVAFYSDVTA 168 (316)
Q Consensus 122 --------~~~~~l~~~~~I~~~Pti~l~--~g~~~~~~~G~~~~~~l~~fi~~~~~ 168 (316)
+.+..+.++|+|.++||++++ +|+.+.++.|....+.|.+++++.+.
T Consensus 481 ~i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 481 NISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred CCCccEEECCchHHHHhcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 224467889999999999999 78888999999999999999998754
No 91
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.28 E-value=1.5e-11 Score=96.46 Aligned_cols=88 Identities=15% Similarity=0.284 Sum_probs=58.8
Q ss_pred ceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC-CcEEEEEeCC--CC-----------
Q 021221 59 VGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESA--IR----------- 124 (316)
Q Consensus 59 v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~-~~~v~~~~~~--~~----------- 124 (316)
+..++|+.+++.+. .++++++|+||++||++|+.+.|.++++++.+.+ ...+.+.+.+ ..
T Consensus 5 l~~~~G~~~~l~~~------~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~ 78 (114)
T cd02967 5 LTTIDGAPVRIGGI------SPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEA 78 (114)
T ss_pred eecCCCCEEEcccc------cCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCC
Confidence 34456777666665 1479999999999999999999999999988755 3333332221 11
Q ss_pred ------hhhHhhcCCCccceEEEEeCceeEEEeC
Q 021221 125 ------PSILSKYGVHGFPTLFLLNSSMRVRYHG 152 (316)
Q Consensus 125 ------~~l~~~~~I~~~Pti~l~~g~~~~~~~G 152 (316)
.++.++|++.++|++++++.+-...|.|
T Consensus 79 ~p~~~~~~~~~~~~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 79 FPYVLSAELGMAYQVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred CcEEecHHHHhhcCCCCcCeEEEECCCCeEEecc
Confidence 2455667777778887774333344443
No 92
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.26 E-value=4e-11 Score=92.86 Aligned_cols=84 Identities=32% Similarity=0.585 Sum_probs=66.3
Q ss_pred EEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcC--CCcEEEEEeCCCC--------------
Q 021221 61 VIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYS--SIPHFAIEESAIR-------------- 124 (316)
Q Consensus 61 ~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~--~~~~v~~~~~~~~-------------- 124 (316)
.++++.+++.+. .+++++|.||++||++|++..+.+.++.+.+. ++..+.+ +.+..
T Consensus 6 ~~~g~~~~~~~~-------~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v-~~d~~~~~~~~~~~~~~~~ 77 (116)
T cd02966 6 DLDGKPVSLSDL-------KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGV-NVDDDDPAAVKAFLKKYGI 77 (116)
T ss_pred CCCCCEeehHHc-------CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEE-ECCCCCHHHHHHHHHHcCC
Confidence 356667666655 47899999999999999999999999999984 4444443 44443
Q ss_pred ---------hhhHhhcCCCccceEEEE--eCceeEEEeC
Q 021221 125 ---------PSILSKYGVHGFPTLFLL--NSSMRVRYHG 152 (316)
Q Consensus 125 ---------~~l~~~~~I~~~Pti~l~--~g~~~~~~~G 152 (316)
..+.+.|++.++|+++++ +|+.+.++.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 78 TFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred CcceEEcCcchHHHhcCcCccceEEEECCCCcEEEEecC
Confidence 678999999999999999 5777777765
No 93
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.26 E-value=4.1e-11 Score=95.72 Aligned_cols=88 Identities=10% Similarity=0.146 Sum_probs=60.8
Q ss_pred ccCCCeEEEEEEcCCChHHHhhhHH-H--HHHHHHc-CCCcEEEEEeCCCChhhHh--------hcCCCccceEEEE--e
Q 021221 78 KNSHEYVAVLFYASWCPFSRNFRPS-F--SVLSSLY-SSIPHFAIEESAIRPSILS--------KYGVHGFPTLFLL--N 143 (316)
Q Consensus 78 ~~~~~~vlV~Fya~WC~~Ck~~~p~-~--~~la~~~-~~~~~v~~~~~~~~~~l~~--------~~~I~~~Pti~l~--~ 143 (316)
++.+|+++|+|||+||+.|+.|.+. | .++++.. ++.+.+.+ |.++.+++.+ .||+.|+||++++ +
T Consensus 12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~Vkv-D~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~ 90 (124)
T cd02955 12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKV-DREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPD 90 (124)
T ss_pred HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEE-eCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCC
Confidence 5689999999999999999999873 3 2455554 34454544 5556676655 3599999999999 6
Q ss_pred CceeEEEeCC-----CCHHHHHHHHHHh
Q 021221 144 SSMRVRYHGS-----RTLDSLVAFYSDV 166 (316)
Q Consensus 144 g~~~~~~~G~-----~~~~~l~~fi~~~ 166 (316)
|+.+....+. .+...+.+++++.
T Consensus 91 G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd02955 91 LKPFFGGTYFPPEDRYGRPGFKTVLEKI 118 (124)
T ss_pred CCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence 7777554432 3334555555543
No 94
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.22 E-value=9.4e-11 Score=100.78 Aligned_cols=105 Identities=16% Similarity=0.217 Sum_probs=71.8
Q ss_pred CCcceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeC--------------
Q 021221 56 QDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEES-------------- 121 (316)
Q Consensus 56 ~~~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~-------------- 121 (316)
+..++.++|+++++.+. ...+++++|+||++||++|+++.|.+.++.+.+. ...+.+.+.
T Consensus 54 ~f~l~d~~G~~v~l~~~-----~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~-~~vv~Is~~~~~~~~~~~~~~~~ 127 (189)
T TIGR02661 54 IFNLPDFDGEPVRIGGS-----IAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE-TDVVMISDGTPAEHRRFLKDHEL 127 (189)
T ss_pred CcEecCCCCCEEeccch-----hcCCCEEEEEEECCCChhHHHHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHHHHhcCC
Confidence 44456667887666432 1267899999999999999999999999987653 333333211
Q ss_pred -----CCChhhHhhcCCCccceEEEEeCceeEEEeCC-CCHHHHHHHHHHh
Q 021221 122 -----AIRPSILSKYGVHGFPTLFLLNSSMRVRYHGS-RTLDSLVAFYSDV 166 (316)
Q Consensus 122 -----~~~~~l~~~~~I~~~Pti~l~~g~~~~~~~G~-~~~~~l~~fi~~~ 166 (316)
....++.+.|+|.++|+.++++.+-..++.|. ...+.+.+.++..
T Consensus 128 ~~~~~~~~~~i~~~y~v~~~P~~~lID~~G~I~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 128 GGERYVVSAEIGMAFQVGKIPYGVLLDQDGKIRAKGLTNTREHLESLLEAD 178 (189)
T ss_pred CcceeechhHHHHhccCCccceEEEECCCCeEEEccCCCCHHHHHHHHHHH
Confidence 01346788999999999999843333344554 3556777777654
No 95
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.21 E-value=6.3e-11 Score=102.63 Aligned_cols=107 Identities=14% Similarity=0.183 Sum_probs=78.9
Q ss_pred CCcceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC--CcEEEEEeC-------C---C
Q 021221 56 QDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEES-------A---I 123 (316)
Q Consensus 56 ~~~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~--~~~v~~~~~-------~---~ 123 (316)
+..+..++|+.+++.+. .+++++|.|||+||++|++..|.++++.++|.+ +.++++.-. + +
T Consensus 21 df~l~d~~G~~vsL~~~-------kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~ 93 (199)
T PTZ00056 21 DYTVKTLEGTTVPMSSL-------KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKD 93 (199)
T ss_pred ceEEECCCCCEEeHHHh-------CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHH
Confidence 44456677888888887 679999999999999999999999999999874 455555310 1 1
Q ss_pred ChhhHhhcCC--------------------------------C----ccc---eEEEE--eCceeEEEeCCCCHHHHHHH
Q 021221 124 RPSILSKYGV--------------------------------H----GFP---TLFLL--NSSMRVRYHGSRTLDSLVAF 162 (316)
Q Consensus 124 ~~~l~~~~~I--------------------------------~----~~P---ti~l~--~g~~~~~~~G~~~~~~l~~f 162 (316)
....++++++ . ++| +.+++ +|+.+.++.|..+.+.|.+.
T Consensus 94 ~~~f~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~ 173 (199)
T PTZ00056 94 IRKFNDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKK 173 (199)
T ss_pred HHHHHHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHH
Confidence 2233444433 1 122 56677 78888899998899999999
Q ss_pred HHHhhCC
Q 021221 163 YSDVTAS 169 (316)
Q Consensus 163 i~~~~~~ 169 (316)
|++.++.
T Consensus 174 I~~ll~~ 180 (199)
T PTZ00056 174 IAELLGV 180 (199)
T ss_pred HHHHHHH
Confidence 9988873
No 96
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.19 E-value=1.1e-10 Score=88.64 Aligned_cols=61 Identities=33% Similarity=0.641 Sum_probs=48.0
Q ss_pred CCeEEEEEEcCCChHHHhhhHHHHHHHHHcC---CCcEEEEEeCCCC-------------------------hhhHhhcC
Q 021221 81 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYS---SIPHFAIEESAIR-------------------------PSILSKYG 132 (316)
Q Consensus 81 ~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~---~~~~v~~~~~~~~-------------------------~~l~~~~~ 132 (316)
+++++|+|||+||++|++..|.+.++.+.|+ ++..+.+. .+.. ..+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVS-LDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE--SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEE-eCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 5899999999999999999999999999999 34444443 2222 25788999
Q ss_pred CCccceEEEE
Q 021221 133 VHGFPTLFLL 142 (316)
Q Consensus 133 I~~~Pti~l~ 142 (316)
|.++|+++++
T Consensus 80 i~~iP~~~ll 89 (95)
T PF13905_consen 80 INGIPTLVLL 89 (95)
T ss_dssp -TSSSEEEEE
T ss_pred CCcCCEEEEE
Confidence 9999999999
No 97
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.17 E-value=1.5e-10 Score=94.96 Aligned_cols=87 Identities=29% Similarity=0.500 Sum_probs=69.3
Q ss_pred EeCCcccHHHHHhHHhccCCCeEEEEEEcC-CChHHHhhhHHHHHHHHHcCC--CcEEEEEeC-----------------
Q 021221 62 IEGDEVSLQMALNMVHKNSHEYVAVLFYAS-WCPFSRNFRPSFSVLSSLYSS--IPHFAIEES----------------- 121 (316)
Q Consensus 62 l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~-WC~~Ck~~~p~~~~la~~~~~--~~~v~~~~~----------------- 121 (316)
.+|+.+++.++ .+++++|.||++ |||+|+...|.++++.+.|.+ +..+.+...
T Consensus 16 ~~g~~~~l~~~-------~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~ 88 (146)
T PF08534_consen 16 LDGKPVSLSDF-------KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFP 88 (146)
T ss_dssp TTSEEEEGGGG-------TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSE
T ss_pred CCCCEecHHHh-------CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCce
Confidence 67888887776 789999999999 999999999999999888654 444444321
Q ss_pred ---CCChhhHhhcCCC---------ccceEEEE--eCceeEEEeCCCC
Q 021221 122 ---AIRPSILSKYGVH---------GFPTLFLL--NSSMRVRYHGSRT 155 (316)
Q Consensus 122 ---~~~~~l~~~~~I~---------~~Pti~l~--~g~~~~~~~G~~~ 155 (316)
|....+.++|++. ++|+++++ +|+.+..+.|..+
T Consensus 89 ~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 89 VLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp EEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred EEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 1234788999998 99999999 7888888888765
No 98
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.17 E-value=1.8e-10 Score=101.90 Aligned_cols=106 Identities=17% Similarity=0.174 Sum_probs=79.1
Q ss_pred CCcceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC--CcEEEEEeC-------CC---
Q 021221 56 QDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEES-------AI--- 123 (316)
Q Consensus 56 ~~~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~--~~~v~~~~~-------~~--- 123 (316)
+..+..++|+.+++.+. .+++++|.|||+||++|+...|.++++.++|.+ +..+++.-. +.
T Consensus 81 dF~l~d~~G~~vsLsd~-------kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~e 153 (236)
T PLN02399 81 DFTVKDIDGKDVALSKF-------KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE 153 (236)
T ss_pred ceEEECCCCCEEeHHHh-------CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHH
Confidence 34455677888888887 579999999999999999999999999999874 455555310 11
Q ss_pred ChhhH-hhcC----------------------------------CCccceEEEE--eCceeEEEeCCCCHHHHHHHHHHh
Q 021221 124 RPSIL-SKYG----------------------------------VHGFPTLFLL--NSSMRVRYHGSRTLDSLVAFYSDV 166 (316)
Q Consensus 124 ~~~l~-~~~~----------------------------------I~~~Pti~l~--~g~~~~~~~G~~~~~~l~~fi~~~ 166 (316)
..+.+ ++++ |...||.+++ +|+.+.+|.|..+.++|.+.|++.
T Consensus 154 i~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~l 233 (236)
T PLN02399 154 IKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKL 233 (236)
T ss_pred HHHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 11221 1221 2335899999 799999999999999999999887
Q ss_pred hC
Q 021221 167 TA 168 (316)
Q Consensus 167 ~~ 168 (316)
+.
T Consensus 234 L~ 235 (236)
T PLN02399 234 LA 235 (236)
T ss_pred hc
Confidence 64
No 99
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.17 E-value=1.9e-10 Score=92.21 Aligned_cols=82 Identities=18% Similarity=0.287 Sum_probs=63.4
Q ss_pred CcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC--CcEEEEEe----C-----------------
Q 021221 65 DEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEE----S----------------- 121 (316)
Q Consensus 65 ~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~--~~~v~~~~----~----------------- 121 (316)
+.+++.+. .+++++|+||++||++|++..|.++++.++|++ +..+.+.. .
T Consensus 14 ~~v~l~~~-------~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~ 86 (126)
T cd03012 14 KPLSLAQL-------RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGIT 86 (126)
T ss_pred CccCHHHh-------CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCC
Confidence 44556666 679999999999999999999999999999975 44444421 0
Q ss_pred -----CCChhhHhhcCCCccceEEEE--eCceeEEEeCC
Q 021221 122 -----AIRPSILSKYGVHGFPTLFLL--NSSMRVRYHGS 153 (316)
Q Consensus 122 -----~~~~~l~~~~~I~~~Pti~l~--~g~~~~~~~G~ 153 (316)
|....+.+.|++.++|+++++ +|+.+..+.|.
T Consensus 87 ~p~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 87 YPVANDNDYATWRAYGNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCEEECCchHHHHHhCCCcCCeEEEECCCCcEEEEEecC
Confidence 112356788999999999999 67777777774
No 100
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.14 E-value=1.1e-10 Score=82.81 Aligned_cols=60 Identities=20% Similarity=0.430 Sum_probs=49.6
Q ss_pred EEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEEeCc
Q 021221 84 VAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSS 145 (316)
Q Consensus 84 vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~~g~ 145 (316)
-++.||++||++|+++.|.+++++..++++. +...|.+++++++++|||.++||+++ +|+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~-~~~id~~~~~~l~~~~~i~~vPti~i-~~~ 61 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNIS-AEMIDAAEFPDLADEYGVMSVPAIVI-NGK 61 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceE-EEEEEcccCHhHHHHcCCcccCEEEE-CCE
Confidence 3788999999999999999999988876544 44446667889999999999999865 654
No 101
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.12 E-value=4.8e-10 Score=84.38 Aligned_cols=77 Identities=16% Similarity=0.295 Sum_probs=62.5
Q ss_pred CCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEEeCceeEEEeCCCCHHHH
Q 021221 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSL 159 (316)
Q Consensus 80 ~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~~g~~~~~~~G~~~~~~l 159 (316)
++...+..|+++||++|+...+.+++++..++++ .+.+.|.+..++++++|||.++||+++ ||+.+. .|..+.+++
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i-~~~~vd~~~~~e~a~~~~V~~vPt~vi-dG~~~~--~G~~~~~e~ 86 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNPNI-EHEMIDGALFQDEVEERGIMSVPAIFL-NGELFG--FGRMTLEEI 86 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCc-eEEEEEhHhCHHHHHHcCCccCCEEEE-CCEEEE--eCCCCHHHH
Confidence 4556788999999999999999999999998764 455556777899999999999999964 886544 586676665
Q ss_pred H
Q 021221 160 V 160 (316)
Q Consensus 160 ~ 160 (316)
.
T Consensus 87 ~ 87 (89)
T cd03026 87 L 87 (89)
T ss_pred h
Confidence 4
No 102
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.10 E-value=1.1e-09 Score=86.33 Aligned_cols=99 Identities=11% Similarity=0.183 Sum_probs=74.4
Q ss_pred HHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHH-H--HHHHHHcC-CCcEEEEEeC-CCChhhHhhcCCCccceEEEE-
Q 021221 69 LQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPS-F--SVLSSLYS-SIPHFAIEES-AIRPSILSKYGVHGFPTLFLL- 142 (316)
Q Consensus 69 ~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~-~--~~la~~~~-~~~~v~~~~~-~~~~~l~~~~~I~~~Pti~l~- 142 (316)
|+++++.. ++.+|+++|+|+++||++|+.|... | +++.+.+. +.+.+..+.. .+..+++..|++.++|+++++
T Consensus 6 ~~~a~~~A-k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~ 84 (114)
T cd02958 6 FEDAKQEA-KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIID 84 (114)
T ss_pred HHHHHHHH-HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEe
Confidence 66665444 4678999999999999999999653 3 34444443 2344444322 245689999999999999999
Q ss_pred --eCceeEEEeCCCCHHHHHHHHHHhhC
Q 021221 143 --NSSMRVRYHGSRTLDSLVAFYSDVTA 168 (316)
Q Consensus 143 --~g~~~~~~~G~~~~~~l~~fi~~~~~ 168 (316)
+|+.+.++.|..+.+++...+++...
T Consensus 85 ~~~g~~l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 85 PRTGEVLKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred CccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence 47788999999999999999887653
No 103
>PLN02412 probable glutathione peroxidase
Probab=99.06 E-value=8.4e-10 Score=92.98 Aligned_cols=106 Identities=19% Similarity=0.208 Sum_probs=78.5
Q ss_pred CCcceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC--CcEEEEEeC-------CCChh
Q 021221 56 QDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEES-------AIRPS 126 (316)
Q Consensus 56 ~~~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~--~~~v~~~~~-------~~~~~ 126 (316)
+..+..++|+.+++.+. .+++++|.|||+||++|++..|.++++.++|.+ +..+++.-. +...+
T Consensus 11 df~l~d~~G~~v~l~~~-------~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~ 83 (167)
T PLN02412 11 DFTVKDIGGNDVSLNQY-------KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEE 83 (167)
T ss_pred ceEEECCCCCEEeHHHh-------CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHH
Confidence 33445567888888777 579999999999999999999999999999875 455555310 11111
Q ss_pred h----Hhh---------------------cC-------------CCccceEEEE--eCceeEEEeCCCCHHHHHHHHHHh
Q 021221 127 I----LSK---------------------YG-------------VHGFPTLFLL--NSSMRVRYHGSRTLDSLVAFYSDV 166 (316)
Q Consensus 127 l----~~~---------------------~~-------------I~~~Pti~l~--~g~~~~~~~G~~~~~~l~~fi~~~ 166 (316)
+ +++ |+ |.+.|+.+++ +|+.+.++.|..+.++|.+.|++.
T Consensus 84 ~~~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~ 163 (167)
T PLN02412 84 IQQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNL 163 (167)
T ss_pred HHHHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 1 111 11 4456898999 789999999999999999999887
Q ss_pred hC
Q 021221 167 TA 168 (316)
Q Consensus 167 ~~ 168 (316)
++
T Consensus 164 l~ 165 (167)
T PLN02412 164 LG 165 (167)
T ss_pred Hh
Confidence 65
No 104
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.04 E-value=9.7e-10 Score=91.16 Aligned_cols=102 Identities=16% Similarity=0.142 Sum_probs=74.5
Q ss_pred cceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC--CcEEEEEe-------CC---CCh
Q 021221 58 IVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEE-------SA---IRP 125 (316)
Q Consensus 58 ~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~--~~~v~~~~-------~~---~~~ 125 (316)
.+..++|+.+++.+. .+++++|.|||+||++|+...|.++++.+.|.+ +.++++.- .+ ...
T Consensus 6 ~l~~~~G~~~~l~~~-------~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~ 78 (153)
T TIGR02540 6 EVKDARGRTVSLEKY-------RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIE 78 (153)
T ss_pred eeECCCCCEecHHHh-------CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHH
Confidence 344567888888888 679999999999999999999999999999864 45555531 01 111
Q ss_pred hhHh------------------------hcCC---Cccce----EEEE--eCceeEEEeCCCCHHHHHHHHHHh
Q 021221 126 SILS------------------------KYGV---HGFPT----LFLL--NSSMRVRYHGSRTLDSLVAFYSDV 166 (316)
Q Consensus 126 ~l~~------------------------~~~I---~~~Pt----i~l~--~g~~~~~~~G~~~~~~l~~fi~~~ 166 (316)
+.++ +|.+ .++|+ .+++ +|+.+.+|.|..+.++|.+.|++.
T Consensus 79 ~f~~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 79 SFARRNYGVTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred HHHHHhcCCCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 2222 1211 24787 7777 789999999999999999888764
No 105
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.03 E-value=5.5e-10 Score=92.55 Aligned_cols=96 Identities=19% Similarity=0.201 Sum_probs=68.7
Q ss_pred ceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC--CcEEEEEeC-------C---CChh
Q 021221 59 VGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEES-------A---IRPS 126 (316)
Q Consensus 59 v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~--~~~v~~~~~-------~---~~~~ 126 (316)
+..++|+.+++.+. .+++++|.|||+||+ |+...|.++++.++|.+ +..+++... + ...+
T Consensus 7 l~d~~G~~v~l~~~-------~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~ 78 (152)
T cd00340 7 VKDIDGEPVSLSKY-------KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKE 78 (152)
T ss_pred EECCCCCEEeHHHh-------CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHH
Confidence 34567777788887 579999999999999 99999999999999964 455555310 0 1112
Q ss_pred hHh----------------------hcC--CCccc-----------eEEEE--eCceeEEEeCCCCHHHHHHH
Q 021221 127 ILS----------------------KYG--VHGFP-----------TLFLL--NSSMRVRYHGSRTLDSLVAF 162 (316)
Q Consensus 127 l~~----------------------~~~--I~~~P-----------ti~l~--~g~~~~~~~G~~~~~~l~~f 162 (316)
.++ .|+ +.++| |.+++ +|+.+.++.|..+.++|.+.
T Consensus 79 f~~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 79 FCETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred HHHHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 222 222 24567 67777 78899999999988877653
No 106
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.97 E-value=7.2e-09 Score=87.47 Aligned_cols=106 Identities=20% Similarity=0.317 Sum_probs=76.5
Q ss_pred cceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC--CcEEEEEeCC-------------
Q 021221 58 IVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEESA------------- 122 (316)
Q Consensus 58 ~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~--~~~v~~~~~~------------- 122 (316)
.+...+++.+++.+. ..++++||+||++||+.|....|.+.++.++|++ +.++.+.-.+
T Consensus 8 ~l~~~~g~~v~l~~~------~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~ 81 (171)
T cd02969 8 SLPDTDGKTYSLADF------ADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMK 81 (171)
T ss_pred cccCCCCCEEeHHHH------hCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHH
Confidence 344456677777775 3678999999999999999999999999999973 4444443111
Q ss_pred ---------------CChhhHhhcCCCccceEEEE--eCceeEEE---------eCCCCHHHHHHHHHHhhCC
Q 021221 123 ---------------IRPSILSKYGVHGFPTLFLL--NSSMRVRY---------HGSRTLDSLVAFYSDVTAS 169 (316)
Q Consensus 123 ---------------~~~~l~~~~~I~~~Pti~l~--~g~~~~~~---------~G~~~~~~l~~fi~~~~~~ 169 (316)
....+.+.|+|...|+++++ +|+.+... .+..+.+++.+.|+..+..
T Consensus 82 ~~~~~~~~~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 154 (171)
T cd02969 82 AKAKEHGYPFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAG 154 (171)
T ss_pred HHHHHCCCCceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcC
Confidence 12356788999999999999 45444332 0223568899999988874
No 107
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.95 E-value=3.1e-09 Score=85.05 Aligned_cols=80 Identities=18% Similarity=0.299 Sum_probs=51.0
Q ss_pred HHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHH---HHHHHHcC-CCcEEEEEe--CCCChhhHhhcCCCccceEEEE
Q 021221 69 LQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSF---SVLSSLYS-SIPHFAIEE--SAIRPSILSKYGVHGFPTLFLL 142 (316)
Q Consensus 69 ~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~---~~la~~~~-~~~~v~~~~--~~~~~~l~~~~~I~~~Pti~l~ 142 (316)
+++++... +..+|+++|+|+++||++|+.|...+ .++.+... +.+.+.++. .+.+.. ..| .++||++|+
T Consensus 12 ~eeal~~A-k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~---~~g-~~vPtivFl 86 (130)
T cd02960 12 YEEGLYKA-KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS---PDG-QYVPRIMFV 86 (130)
T ss_pred HHHHHHHH-HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC---ccC-cccCeEEEE
Confidence 66664443 57899999999999999999997654 23333332 333333332 222222 234 689999999
Q ss_pred --eCceeEEEeCC
Q 021221 143 --NSSMRVRYHGS 153 (316)
Q Consensus 143 --~g~~~~~~~G~ 153 (316)
+|+.+.+..|.
T Consensus 87 d~~g~vi~~i~Gy 99 (130)
T cd02960 87 DPSLTVRADITGR 99 (130)
T ss_pred CCCCCCccccccc
Confidence 67776666654
No 108
>smart00594 UAS UAS domain.
Probab=98.95 E-value=4.1e-09 Score=84.10 Aligned_cols=94 Identities=14% Similarity=0.237 Sum_probs=68.3
Q ss_pred HHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHH---HHHHHHcCC-CcEEEEE-eCCCChhhHhhcCCCccceEEEE-
Q 021221 69 LQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSF---SVLSSLYSS-IPHFAIE-ESAIRPSILSKYGVHGFPTLFLL- 142 (316)
Q Consensus 69 ~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~---~~la~~~~~-~~~v~~~-~~~~~~~l~~~~~I~~~Pti~l~- 142 (316)
++++.+.. ...+|+++|+|+++||+.|+.+.... .++.+...+ .+.+..+ +..+..+++.+|+++++|++.++
T Consensus 16 ~~~a~~~A-k~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~ 94 (122)
T smart00594 16 LEAAKQEA-SRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVD 94 (122)
T ss_pred HHHHHHHH-HhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEe
Confidence 77775554 46789999999999999999996542 233333332 3443443 23355789999999999999999
Q ss_pred -eC-----ceeEEEeCCCCHHHHHHHH
Q 021221 143 -NS-----SMRVRYHGSRTLDSLVAFY 163 (316)
Q Consensus 143 -~g-----~~~~~~~G~~~~~~l~~fi 163 (316)
+| ..+.+..|..+.++|..++
T Consensus 95 ~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 95 PRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred cCCCceeEEEeccccCCCCHHHHHHhh
Confidence 44 2356788999999998876
No 109
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.94 E-value=1.6e-08 Score=81.01 Aligned_cols=96 Identities=16% Similarity=0.188 Sum_probs=79.1
Q ss_pred HHHHHhHHhccCCCeEEEEEEc--CCChHHHhhhHHHHHHHHHcCC-CcEEEEEeCCCChhhHhhcCCCccceEEEE-eC
Q 021221 69 LQMALNMVHKNSHEYVAVLFYA--SWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESAIRPSILSKYGVHGFPTLFLL-NS 144 (316)
Q Consensus 69 ~~~~~~~i~~~~~~~vlV~Fya--~WC~~Ck~~~p~~~~la~~~~~-~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g 144 (316)
++++ . ......+|.|-. .-++.+-...=++++++++|++ ...+..+|.+++++++.+|||.++||+++| +|
T Consensus 27 ~~~~----~-~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdG 101 (132)
T PRK11509 27 LDDW----L-TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGG 101 (132)
T ss_pred HHHH----H-hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECC
Confidence 6666 2 233333433332 2477788888899999999985 478888899999999999999999999999 99
Q ss_pred ceeEEEeCCCCHHHHHHHHHHhhCC
Q 021221 145 SMRVRYHGSRTLDSLVAFYSDVTAS 169 (316)
Q Consensus 145 ~~~~~~~G~~~~~~l~~fi~~~~~~ 169 (316)
+.+.+..|.++.+++.++|+++++.
T Consensus 102 k~v~~i~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 102 NYRGVLNGIHPWAELINLMRGLVEP 126 (132)
T ss_pred EEEEEEeCcCCHHHHHHHHHHHhcC
Confidence 9999999999999999999999884
No 110
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.88 E-value=4.3e-09 Score=102.01 Aligned_cols=91 Identities=19% Similarity=0.318 Sum_probs=73.4
Q ss_pred HhccCCCeEEEEEEcCCChHHHhhhHHHH---HHHHHcCCCcEEEEEeCC---CChhhHhhcCCCccceEEEE--eCcee
Q 021221 76 VHKNSHEYVAVLFYASWCPFSRNFRPSFS---VLSSLYSSIPHFAIEESA---IRPSILSKYGVHGFPTLFLL--NSSMR 147 (316)
Q Consensus 76 i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~---~la~~~~~~~~v~~~~~~---~~~~l~~~~~I~~~Pti~l~--~g~~~ 147 (316)
+..+.+|+|+|+|||+||-.||.+++..- +...+.++++.+..|-.. +..++.++||+-|.|++++| +|++.
T Consensus 469 la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~~~g~e~ 548 (569)
T COG4232 469 LAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVPTYLFFGPQGSEP 548 (569)
T ss_pred HHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEECCCCCcC
Confidence 34455579999999999999999988753 455567787777776333 34578899999999999999 67777
Q ss_pred EEEeCCCCHHHHHHHHHHh
Q 021221 148 VRYHGSRTLDSLVAFYSDV 166 (316)
Q Consensus 148 ~~~~G~~~~~~l~~fi~~~ 166 (316)
....|..+.+.+.+++++.
T Consensus 549 ~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 549 EILTGFLTADAFLEHLERA 567 (569)
T ss_pred cCCcceecHHHHHHHHHHh
Confidence 7789999999999999875
No 111
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.87 E-value=2e-08 Score=85.83 Aligned_cols=106 Identities=15% Similarity=0.153 Sum_probs=75.0
Q ss_pred CCcceEEeCCcccHHHHHhHHhccCCCeE-EEEEEcCCChHHHhhhHHHHHHHHHcCC--CcEEEEEeC-----C-CC-h
Q 021221 56 QDIVGVIEGDEVSLQMALNMVHKNSHEYV-AVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEES-----A-IR-P 125 (316)
Q Consensus 56 ~~~v~~l~~~~~~~~~~~~~i~~~~~~~v-lV~Fya~WC~~Ck~~~p~~~~la~~~~~--~~~v~~~~~-----~-~~-~ 125 (316)
+..+..++|+.+++.+. .++++ ++.|||+|||+|+...|.++++.++|.+ +..+++.-. + .. .
T Consensus 22 ~f~l~d~~G~~vsLs~~-------~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~ 94 (183)
T PTZ00256 22 EFEAIDIDGQLVQLSKF-------KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEP 94 (183)
T ss_pred ceEeEcCCCCEEeHHHh-------CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHH
Confidence 34455678888888888 57755 4566999999999999999999999874 455555310 0 00 0
Q ss_pred ---hh-Hhh------------------------------------cCCCccce---EEEE--eCceeEEEeCCCCHHHHH
Q 021221 126 ---SI-LSK------------------------------------YGVHGFPT---LFLL--NSSMRVRYHGSRTLDSLV 160 (316)
Q Consensus 126 ---~l-~~~------------------------------------~~I~~~Pt---i~l~--~g~~~~~~~G~~~~~~l~ 160 (316)
.. .++ +++.++|+ .+++ +|+.+.+|.|..+.+++.
T Consensus 95 ~~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~ 174 (183)
T PTZ00256 95 EIKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMI 174 (183)
T ss_pred HHHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHH
Confidence 00 111 24567895 4677 788899999999999999
Q ss_pred HHHHHhhC
Q 021221 161 AFYSDVTA 168 (316)
Q Consensus 161 ~fi~~~~~ 168 (316)
+.|++.+.
T Consensus 175 ~~I~~ll~ 182 (183)
T PTZ00256 175 QDIEKLLN 182 (183)
T ss_pred HHHHHHhc
Confidence 98887654
No 112
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.82 E-value=3.7e-08 Score=80.45 Aligned_cols=90 Identities=17% Similarity=0.122 Sum_probs=66.8
Q ss_pred CcceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCC-ChHHHhhhHHHHHHHHHcCCCcEEEEEeC--------------
Q 021221 57 DIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASW-CPFSRNFRPSFSVLSSLYSSIPHFAIEES-------------- 121 (316)
Q Consensus 57 ~~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~W-C~~Ck~~~p~~~~la~~~~~~~~v~~~~~-------------- 121 (316)
..+...+|+.+++.+. .+++++|.||+.| |++|+...|.++++.++++++..+++...
T Consensus 9 f~l~~~~g~~~~l~~~-------~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~ 81 (143)
T cd03014 9 FTLVTSDLSEVSLADF-------AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGV 81 (143)
T ss_pred cEEECCCCcEEeHHHh-------CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCC
Confidence 3445566777788777 5789999999999 69999999999999999987666655321
Q ss_pred -------CCC-hhhHhhcCCCc------cceEEEE--eCceeEEEeCC
Q 021221 122 -------AIR-PSILSKYGVHG------FPTLFLL--NSSMRVRYHGS 153 (316)
Q Consensus 122 -------~~~-~~l~~~~~I~~------~Pti~l~--~g~~~~~~~G~ 153 (316)
+.. ..+++.||+.. .|+.+++ +|+.+..+.|.
T Consensus 82 ~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~~ 129 (143)
T cd03014 82 DNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVELVP 129 (143)
T ss_pred CCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEECC
Confidence 111 45677888863 6888888 67776666653
No 113
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.82 E-value=3.6e-08 Score=83.03 Aligned_cols=99 Identities=15% Similarity=0.085 Sum_probs=70.4
Q ss_pred ceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCC-ChHHHhhhHHHHHHHHHcCCCcEEEEEeC----------------
Q 021221 59 VGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASW-CPFSRNFRPSFSVLSSLYSSIPHFAIEES---------------- 121 (316)
Q Consensus 59 v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~W-C~~Ck~~~p~~~~la~~~~~~~~v~~~~~---------------- 121 (316)
+...+|+.+++.+. .+++++|.||++| |++|....|.++++++++.+...+++...
T Consensus 29 l~~~~g~~v~l~~~-------~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~ 101 (167)
T PRK00522 29 LVANDLSDVSLADF-------AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLEN 101 (167)
T ss_pred EEcCCCcEEehHHh-------CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCC
Confidence 34456777777776 5789999999999 99999999999999999866544444211
Q ss_pred -----C-CChhhHhhcCCCccc---------eEEEE--eCceeEEEeCC-----CCHHHHHHHHH
Q 021221 122 -----A-IRPSILSKYGVHGFP---------TLFLL--NSSMRVRYHGS-----RTLDSLVAFYS 164 (316)
Q Consensus 122 -----~-~~~~l~~~~~I~~~P---------ti~l~--~g~~~~~~~G~-----~~~~~l~~fi~ 164 (316)
| ....+++.||+...| +++++ +|+.+..+.+. .+.+++.++++
T Consensus 102 ~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~ 166 (167)
T PRK00522 102 VITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAALK 166 (167)
T ss_pred ceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhh
Confidence 1 123678889998877 88888 56666665432 24566666553
No 114
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.81 E-value=2.2e-08 Score=81.23 Aligned_cols=99 Identities=17% Similarity=0.204 Sum_probs=74.8
Q ss_pred cceEEeCCcccHHHHHhHHhccCCCeEEEEEE-cCCChHHHhhhHHHHHHHHHcCC--CcEEEEEe--------------
Q 021221 58 IVGVIEGDEVSLQMALNMVHKNSHEYVAVLFY-ASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEE-------------- 120 (316)
Q Consensus 58 ~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fy-a~WC~~Ck~~~p~~~~la~~~~~--~~~v~~~~-------------- 120 (316)
.+...+|+.+++.+. .+++++|.|| +.||+.|....|.+.++.+.+.+ +..+.+..
T Consensus 7 ~l~~~~g~~~~l~~~-------~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 79 (140)
T cd03017 7 TLPDQDGETVSLSDL-------RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYG 79 (140)
T ss_pred cccCCCCCEEeHHHh-------CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence 345567888888877 5789999999 58999999999999999988753 33333321
Q ss_pred ------CCCChhhHhhcCCCcc---------ceEEEE--eCceeEEEeCCCCHHHHHHHH
Q 021221 121 ------SAIRPSILSKYGVHGF---------PTLFLL--NSSMRVRYHGSRTLDSLVAFY 163 (316)
Q Consensus 121 ------~~~~~~l~~~~~I~~~---------Pti~l~--~g~~~~~~~G~~~~~~l~~fi 163 (316)
+|....+.+.||+... |+++++ +|+.+..+.|..+.+++.+-+
T Consensus 80 ~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 80 LPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred CCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 1223468888999988 899999 688888999988777766543
No 115
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.79 E-value=1.1e-08 Score=75.72 Aligned_cols=72 Identities=22% Similarity=0.450 Sum_probs=47.6
Q ss_pred HHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHH---HHHHHH-cCCCcEEEEEeCCCChhhHhhcCCCccceEEEEe
Q 021221 69 LQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSF---SVLSSL-YSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLN 143 (316)
Q Consensus 69 ~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~---~~la~~-~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~~ 143 (316)
+++++... ...+++++|+|+|+||++|+.|...+ .++.+. .++.+.+.++..+.+... .+..+++|++++++
T Consensus 6 ~~~al~~A-~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~--~~~~~~~P~~~~ld 81 (82)
T PF13899_consen 6 YEEALAEA-KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA--QFDRQGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHH-HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH--HHHHCSSSEEEEEE
T ss_pred HHHHHHHH-HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH--HhCCccCCEEEEeC
Confidence 56665444 46789999999999999999998776 344442 234566666543222222 22227799999874
No 116
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=2e-08 Score=85.54 Aligned_cols=76 Identities=25% Similarity=0.503 Sum_probs=66.3
Q ss_pred HhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC-CcEEEEEeCCCChhhHhhcCCC------ccceEEEE-eCcee
Q 021221 76 VHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESAIRPSILSKYGVH------GFPTLFLL-NSSMR 147 (316)
Q Consensus 76 i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~-~~~v~~~~~~~~~~l~~~~~I~------~~Pti~l~-~g~~~ 147 (316)
+-.+..+.|+|.|||.|.+.|++..|.|.+|+.+|.. ...++.+|....++.+++|+|. ..||+++| +|+++
T Consensus 139 l~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ilFq~gkE~ 218 (265)
T KOG0914|consen 139 LDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYILFQKGKEV 218 (265)
T ss_pred hccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEEEEccchhh
Confidence 3467889999999999999999999999999999975 6778888888889999999985 69999999 88877
Q ss_pred EEEe
Q 021221 148 VRYH 151 (316)
Q Consensus 148 ~~~~ 151 (316)
.|..
T Consensus 219 ~RrP 222 (265)
T KOG0914|consen 219 SRRP 222 (265)
T ss_pred hcCc
Confidence 6543
No 117
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.78 E-value=9.1e-09 Score=81.61 Aligned_cols=84 Identities=23% Similarity=0.542 Sum_probs=62.6
Q ss_pred ceEEeCCcccHHHHHhHHhccCCCeEEEEEEcC-CChHHHhhhHHHHHHHHHcC--CCcEEEEEeC--------------
Q 021221 59 VGVIEGDEVSLQMALNMVHKNSHEYVAVLFYAS-WCPFSRNFRPSFSVLSSLYS--SIPHFAIEES-------------- 121 (316)
Q Consensus 59 v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~-WC~~Ck~~~p~~~~la~~~~--~~~~v~~~~~-------------- 121 (316)
+...+++.++++++ .+++++|.||++ ||++|+...+.++++.++|+ ++..+.+...
T Consensus 10 l~~~~g~~~~l~~l-------~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~ 82 (124)
T PF00578_consen 10 LTDSDGKTVSLSDL-------KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGL 82 (124)
T ss_dssp EETTTSEEEEGGGG-------TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTC
T ss_pred eECCCCCEEEHHHH-------CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhcc
Confidence 34445667777666 679999999999 99999999999999999887 4445554322
Q ss_pred ------CCChhhHhhcCCC------ccceEEEEeCceeEE
Q 021221 122 ------AIRPSILSKYGVH------GFPTLFLLNSSMRVR 149 (316)
Q Consensus 122 ------~~~~~l~~~~~I~------~~Pti~l~~g~~~~~ 149 (316)
|....+++.|++. .+|++++++.+..++
T Consensus 83 ~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~ 122 (124)
T PF00578_consen 83 PFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIR 122 (124)
T ss_dssp SSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEE
T ss_pred ccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEE
Confidence 1234788899999 999999994433333
No 118
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.78 E-value=3.1e-08 Score=76.04 Aligned_cols=82 Identities=27% Similarity=0.493 Sum_probs=62.6
Q ss_pred CCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC-CcEEEEEeCCCChhhHhhcC--CCccceEEEE-eCceeEEEeC--CC
Q 021221 81 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESAIRPSILSKYG--VHGFPTLFLL-NSSMRVRYHG--SR 154 (316)
Q Consensus 81 ~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~-~~~v~~~~~~~~~~l~~~~~--I~~~Pti~l~-~g~~~~~~~G--~~ 154 (316)
++++++.||++||++|+.+.|.+.++++.+.. ...+.++..+..+++...|+ +..+|++.++ ++.....+.+ ..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 111 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVL 111 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccC
Confidence 78999999999999999999999999999986 44444433236788999999 9999999887 6666555555 34
Q ss_pred CHHHHHHH
Q 021221 155 TLDSLVAF 162 (316)
Q Consensus 155 ~~~~l~~f 162 (316)
....+..-
T Consensus 112 ~~~~~~~~ 119 (127)
T COG0526 112 PKEALIDA 119 (127)
T ss_pred CHHHHHHH
Confidence 44444443
No 119
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.74 E-value=3.7e-09 Score=91.03 Aligned_cols=101 Identities=17% Similarity=0.335 Sum_probs=85.3
Q ss_pred ceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC-CcEEEEEeCCCChhhHhhcCCCccc
Q 021221 59 VGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESAIRPSILSKYGVHGFP 137 (316)
Q Consensus 59 v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~-~~~v~~~~~~~~~~l~~~~~I~~~P 137 (316)
+..++.++ +.+. ...-++++|+|||||.|+...|.|+.++.--.+ -+.++.+|...++-|.-+|-|...|
T Consensus 26 ~~~~~een--w~~~-------l~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLp 96 (248)
T KOG0913|consen 26 LTRIDEEN--WKEL-------LTGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALP 96 (248)
T ss_pred eEEecccc--hhhh-------hchHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecc
Confidence 34445545 7777 346799999999999999999999999876555 4677878888899999999999999
Q ss_pred eEEEEeCceeEEEeCCCCHHHHHHHHHHhhC
Q 021221 138 TLFLLNSSMRVRYHGSRTLDSLVAFYSDVTA 168 (316)
Q Consensus 138 ti~l~~g~~~~~~~G~~~~~~l~~fi~~~~~ 168 (316)
||+-....+..+|.|.|+.++++.|+...--
T Consensus 97 tIYHvkDGeFrrysgaRdk~dfisf~~~r~w 127 (248)
T KOG0913|consen 97 TIYHVKDGEFRRYSGARDKNDFISFEEHREW 127 (248)
T ss_pred eEEEeeccccccccCcccchhHHHHHHhhhh
Confidence 9998866788899999999999999987654
No 120
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.73 E-value=7.6e-08 Score=81.44 Aligned_cols=97 Identities=16% Similarity=0.258 Sum_probs=70.6
Q ss_pred CcccHHHHHhHHhccCCCeEEEEEE-cCCChHHHhhhHHHHHHHHHcCC--CcEEEEEe---------------------
Q 021221 65 DEVSLQMALNMVHKNSHEYVAVLFY-ASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEE--------------------- 120 (316)
Q Consensus 65 ~~~~~~~~~~~i~~~~~~~vlV~Fy-a~WC~~Ck~~~p~~~~la~~~~~--~~~v~~~~--------------------- 120 (316)
+.+++.+. .+++++|.|| +.||++|....|.+++++++|.+ +..+.+..
T Consensus 20 ~~~~l~~~-------~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~ 92 (173)
T cd03015 20 KEISLSDY-------KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGK 92 (173)
T ss_pred eEEehHHh-------CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccC
Confidence 46667776 5689999999 89999999999999999998853 33333321
Q ss_pred ------CCCChhhHhhcCCC------ccceEEEE--eCceeEEEeC----CCCHHHHHHHHHHhhC
Q 021221 121 ------SAIRPSILSKYGVH------GFPTLFLL--NSSMRVRYHG----SRTLDSLVAFYSDVTA 168 (316)
Q Consensus 121 ------~~~~~~l~~~~~I~------~~Pti~l~--~g~~~~~~~G----~~~~~~l~~fi~~~~~ 168 (316)
.|....+.+.||+. ..|+++++ +|+.+..+.+ .++.+++.+.|++...
T Consensus 93 ~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~~ 158 (173)
T cd03015 93 INFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQF 158 (173)
T ss_pred cceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhh
Confidence 11234577888986 57899999 6777777744 3467888888876543
No 121
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.72 E-value=1.4e-09 Score=85.51 Aligned_cols=81 Identities=15% Similarity=0.142 Sum_probs=59.9
Q ss_pred CCcccccccCccccCCCccccccCCcccC---ChhhhhchHHHHHHHH-----------------HHHHHHhHHh--hhh
Q 021221 173 ISPDKVGKASNHEKHNNTEEESCPFSWAR---SPENLLQQETYLALAT-----------------AFVLLRLVYI--FLP 230 (316)
Q Consensus 173 ~~~~~~~~~~~~~~~~~v~f~~~~~pw~~---~~~~~l~~~~~~~lA~-----------------~f~~~~~~i~--~~P 230 (316)
.++++++. ....++|+| +++.|||+ ||+++ +|.|...|. .=+|.+|+|. +||
T Consensus 9 ~nF~~~v~---~~~~vlV~F-~A~~Pwc~k~~~~~~L--A~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyP 82 (116)
T cd03007 9 VTFYKVIP---KFKYSLVKF-DTAYPYGEKHEAFTRL--AESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYP 82 (116)
T ss_pred hhHHHHHh---cCCcEEEEE-eCCCCCCCChHHHHHH--HHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCC
Confidence 44555443 344589999 99999999 99999 999977542 3367999999 999
Q ss_pred hHhHhhccceehhhhcccccccchhhhHHH-H-HHHHHH-HHhcc
Q 021221 231 TLLIFAQFTWRRLIRNLKLGSLLEHPRTYL-N-RAIQLF-KTLNE 272 (316)
Q Consensus 231 tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-r~~~~~-~~l~~ 272 (316)
||++|.+|.. +.+..|. + |..+.+ +++++
T Consensus 83 Tl~lF~~g~~-------------~~~~~Y~G~~r~~~~lv~~v~~ 114 (116)
T cd03007 83 VIYLFHGGDF-------------ENPVPYSGADVTVDALQRFLKG 114 (116)
T ss_pred EEEEEeCCCc-------------CCCccCCCCcccHHHHHHHHHh
Confidence 9999999841 4456677 3 666654 77764
No 122
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.68 E-value=2e-07 Score=76.50 Aligned_cols=99 Identities=17% Similarity=0.271 Sum_probs=68.3
Q ss_pred cceEEeCCcccHHHHHhHHhccCC-CeEEEEEE-cCCChHHHhhhHHHHHHHHHcCC--CcEEEEEe-------------
Q 021221 58 IVGVIEGDEVSLQMALNMVHKNSH-EYVAVLFY-ASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEE------------- 120 (316)
Q Consensus 58 ~v~~l~~~~~~~~~~~~~i~~~~~-~~vlV~Fy-a~WC~~Ck~~~p~~~~la~~~~~--~~~v~~~~------------- 120 (316)
.+...+|+.+++.+. .+ ++++|.|| ++||+.|....|.++++.+++.+ +..+.+..
T Consensus 11 ~l~~~~g~~v~l~~~-------~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~ 83 (149)
T cd03018 11 ELPDQNGQEVRLSEF-------RGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEEN 83 (149)
T ss_pred EecCCCCCEEeHHHH-------cCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhc
Confidence 344557888888887 44 88888888 99999999999999999998863 44444321
Q ss_pred -------CCCC--hhhHhhcCCCc----cc--eEEEE--eCceeEEEeCC----CCHHHHHHHH
Q 021221 121 -------SAIR--PSILSKYGVHG----FP--TLFLL--NSSMRVRYHGS----RTLDSLVAFY 163 (316)
Q Consensus 121 -------~~~~--~~l~~~~~I~~----~P--ti~l~--~g~~~~~~~G~----~~~~~l~~fi 163 (316)
+|.. ..+.+.||+.. +| +++++ +|+.+..+.|. ++..++.+-|
T Consensus 84 ~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~ 147 (149)
T cd03018 84 GLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEAL 147 (149)
T ss_pred CCCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHh
Confidence 1222 56778888873 33 77788 67777777764 3445555444
No 123
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.66 E-value=2.3e-07 Score=76.80 Aligned_cols=99 Identities=17% Similarity=0.175 Sum_probs=70.5
Q ss_pred CCcceEEeCCcccHHHHHhHHhccCCCeEEEEEEcC-CChHHHhhhHHHHHHHHHcCC--CcEEEEEe------------
Q 021221 56 QDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYAS-WCPFSRNFRPSFSVLSSLYSS--IPHFAIEE------------ 120 (316)
Q Consensus 56 ~~~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~-WC~~Ck~~~p~~~~la~~~~~--~~~v~~~~------------ 120 (316)
+..+..++|+.+++++. ++++++|.||+. ||+.|....+.+.++.+.+.+ +..+.+..
T Consensus 12 ~f~l~~~~G~~~~l~~~-------~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~ 84 (154)
T PRK09437 12 KFSLPDQDGEQVSLTDF-------QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEK 84 (154)
T ss_pred CcEeeCCCCCEEeHHHh-------CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence 44455677888888887 678999999986 688899999999999888753 33443321
Q ss_pred --------CCCChhhHhhcCCCcc------------ceEEEE--eCceeEEEeCCCCHHHHHH
Q 021221 121 --------SAIRPSILSKYGVHGF------------PTLFLL--NSSMRVRYHGSRTLDSLVA 161 (316)
Q Consensus 121 --------~~~~~~l~~~~~I~~~------------Pti~l~--~g~~~~~~~G~~~~~~l~~ 161 (316)
++....+.+.||+... |+.+++ +|+.+..|.|....+.+.+
T Consensus 85 ~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~ 147 (154)
T PRK09437 85 ELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDV 147 (154)
T ss_pred hCCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHH
Confidence 1223467888998754 667777 7888888988665554333
No 124
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.65 E-value=2.2e-09 Score=95.44 Aligned_cols=58 Identities=9% Similarity=0.031 Sum_probs=49.4
Q ss_pred CccccCCCccccccCCcccCChhhhhchHHHHHHHHHHH-------------------HHHhHHhhhhhHhHhhccceeh
Q 021221 182 SNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV-------------------LLRLVYIFLPTLLIFAQFTWRR 242 (316)
Q Consensus 182 ~~~~~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~-------------------~~~~~i~~~Ptl~~~~~~~~~~ 242 (316)
.+++..|+|+| |+ |||+|||++ .|.|.+++.... ..+++|++||||++|.++.-..
T Consensus 40 nkdddiW~VdF-YA--PWC~HCKkL--ePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~d 114 (468)
T KOG4277|consen 40 NKDDDIWFVDF-YA--PWCAHCKKL--EPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAID 114 (468)
T ss_pred cccCCeEEEEe-ec--hhhhhcccc--cchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeee
Confidence 35567799999 99 999999999 999999988764 3899999999999999887544
Q ss_pred hh
Q 021221 243 LI 244 (316)
Q Consensus 243 ~~ 244 (316)
|.
T Consensus 115 YR 116 (468)
T KOG4277|consen 115 YR 116 (468)
T ss_pred cC
Confidence 43
No 125
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.62 E-value=2.3e-07 Score=67.56 Aligned_cols=73 Identities=19% Similarity=0.349 Sum_probs=56.7
Q ss_pred EEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEEeCceeEEEeC-CCCHHHHHHHHH
Q 021221 86 VLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHG-SRTLDSLVAFYS 164 (316)
Q Consensus 86 V~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~~g~~~~~~~G-~~~~~~l~~fi~ 164 (316)
|.+++++|+.|..+...+++++..+ + ..+.+.+....+++ .+|||.++|++++ ||+ .+|.| ..+.++|.++|+
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~-~-i~~ei~~~~~~~~~-~~ygv~~vPalvI-ng~--~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEEL-G-IEVEIIDIEDFEEI-EKYGVMSVPALVI-NGK--VVFVGRVPSKEELKELLE 76 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHT-T-EEEEEEETTTHHHH-HHTT-SSSSEEEE-TTE--EEEESS--HHHHHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhc-C-CeEEEEEccCHHHH-HHcCCCCCCEEEE-CCE--EEEEecCCCHHHHHHHhC
Confidence 3447888999999999999999998 4 56677777555666 9999999999954 875 56888 668899988874
No 126
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.59 E-value=2.9e-07 Score=65.65 Aligned_cols=69 Identities=16% Similarity=0.366 Sum_probs=48.9
Q ss_pred EEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCCh----hhHhhcCCCccceEEEEeCceeEEEeCCCCHHHHH
Q 021221 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRP----SILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLV 160 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~----~l~~~~~I~~~Pti~l~~g~~~~~~~G~~~~~~l~ 160 (316)
+..|+++||++|+++.+.+++. ++. +...|.+.++ ++.+.+|+.++|++++. |+. ..| .+.+.|.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~-----~i~-~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~-~~~---~~g-~~~~~i~ 70 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK-----GIA-FEEIDVEKDSAAREEVLKVLGQRGVPVIVIG-HKI---IVG-FDPEKLD 70 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC-----CCe-EEEEeccCCHHHHHHHHHHhCCCcccEEEEC-CEE---Eee-CCHHHHH
Confidence 5689999999999999988763 332 2333443333 36678999999999874 432 556 4778888
Q ss_pred HHHH
Q 021221 161 AFYS 164 (316)
Q Consensus 161 ~fi~ 164 (316)
++|+
T Consensus 71 ~~i~ 74 (74)
T TIGR02196 71 QLLE 74 (74)
T ss_pred HHhC
Confidence 8763
No 127
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.58 E-value=9.3e-09 Score=80.86 Aligned_cols=61 Identities=7% Similarity=0.197 Sum_probs=48.5
Q ss_pred CcccccccCccccCCCccccccCCcccCChhhhhchHHHHHHHHHHH----------------H-HHhHHhhhhhHhHhh
Q 021221 174 SPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------L-LRLVYIFLPTLLIFA 236 (316)
Q Consensus 174 ~~~~~~~~~~~~~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~----------------~-~~~~i~~~Ptl~~~~ 236 (316)
++++.++....+..+++.| |+ |||++|+.+ .|.|+++|..+. + .+|+|.+|||+++|.
T Consensus 18 ~f~~~~~v~~~~~~vlV~F-yA--~WC~~Ck~l--~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf~ 92 (113)
T cd03006 18 QLDYAEELRTDAEVSLVMY-YA--PWDAQSQAA--RQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIHLYY 92 (113)
T ss_pred hhHHHHhcccCCCEEEEEE-EC--CCCHHHHHH--HHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEEEEEE
Confidence 3444433334456688999 99 999999999 999999998873 3 478999999999998
Q ss_pred ccc
Q 021221 237 QFT 239 (316)
Q Consensus 237 ~~~ 239 (316)
+|.
T Consensus 93 ~g~ 95 (113)
T cd03006 93 RSR 95 (113)
T ss_pred CCc
Confidence 776
No 128
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.57 E-value=1e-06 Score=75.62 Aligned_cols=94 Identities=11% Similarity=0.146 Sum_probs=67.3
Q ss_pred cccHHHHHhHHhccCCCeEEEEEE-cCCChHHHhhhHHHHHHHHHcC--CCcEEEEEe----------------------
Q 021221 66 EVSLQMALNMVHKNSHEYVAVLFY-ASWCPFSRNFRPSFSVLSSLYS--SIPHFAIEE---------------------- 120 (316)
Q Consensus 66 ~~~~~~~~~~i~~~~~~~vlV~Fy-a~WC~~Ck~~~p~~~~la~~~~--~~~~v~~~~---------------------- 120 (316)
.+++++. .+++++|.|| +.||+.|....|.+.++.++|. ++..+++.-
T Consensus 23 ~~sl~d~-------~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fp 95 (187)
T TIGR03137 23 EVTDEDV-------KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYP 95 (187)
T ss_pred EecHHHH-------CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCccee
Confidence 4455565 6789999999 9999999999999999988875 344444321
Q ss_pred --CCCChhhHhhcCCC------ccceEEEE--eCceeEEEeC----CCCHHHHHHHHHHh
Q 021221 121 --SAIRPSILSKYGVH------GFPTLFLL--NSSMRVRYHG----SRTLDSLVAFYSDV 166 (316)
Q Consensus 121 --~~~~~~l~~~~~I~------~~Pti~l~--~g~~~~~~~G----~~~~~~l~~fi~~~ 166 (316)
.|....+++.|||. ..|+++++ +|+.+..+.+ .++.+++.+.|+..
T Consensus 96 llsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~ 155 (187)
T TIGR03137 96 MLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAA 155 (187)
T ss_pred EEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 11234678899986 46999999 6776665533 34778888777543
No 129
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.57 E-value=3.4e-07 Score=74.82 Aligned_cols=55 Identities=24% Similarity=0.346 Sum_probs=38.9
Q ss_pred ceEEeCCcccHHHHHhHHhccCCCeEEEEE-EcCCChHHHhhhHHHHHHHHHcC--CCcEEEEE
Q 021221 59 VGVIEGDEVSLQMALNMVHKNSHEYVAVLF-YASWCPFSRNFRPSFSVLSSLYS--SIPHFAIE 119 (316)
Q Consensus 59 v~~l~~~~~~~~~~~~~i~~~~~~~vlV~F-ya~WC~~Ck~~~p~~~~la~~~~--~~~~v~~~ 119 (316)
+..++|+.+++.+. ..+++++|.| +++||++|+...|.+.++.+.+. ++..+++.
T Consensus 7 l~~~~g~~~~l~~~------~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~ 64 (149)
T cd02970 7 LPDAGGETVTLSAL------LGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVG 64 (149)
T ss_pred ccCCCCCEEchHHH------hcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEe
Confidence 34456777777665 2334555555 69999999999999999999884 45555553
No 130
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.6e-06 Score=70.32 Aligned_cols=91 Identities=14% Similarity=0.352 Sum_probs=66.0
Q ss_pred ccCCCeEEEEEEcCCChHHHhhhHHHH---HHHHHcCC-CcEEEEE---------------eCCCChhhHhhcCCCccce
Q 021221 78 KNSHEYVAVLFYASWCPFSRNFRPSFS---VLSSLYSS-IPHFAIE---------------ESAIRPSILSKYGVHGFPT 138 (316)
Q Consensus 78 ~~~~~~vlV~Fya~WC~~Ck~~~p~~~---~la~~~~~-~~~v~~~---------------~~~~~~~l~~~~~I~~~Pt 138 (316)
..++++.+++|-++.|++|.++...+. ++.+.+.+ ...+.+. ......+|++.|+|+++||
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPt 118 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPT 118 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCce
Confidence 457899999999999999999976552 33333332 1111111 1112358999999999999
Q ss_pred EEEE--eCceeEEEeCCCCHHHHHHHHHHhhC
Q 021221 139 LFLL--NSSMRVRYHGSRTLDSLVAFYSDVTA 168 (316)
Q Consensus 139 i~l~--~g~~~~~~~G~~~~~~l~~fi~~~~~ 168 (316)
+++| +|+.+....|..+.+++...++-...
T Consensus 119 fvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~ 150 (182)
T COG2143 119 FVFFDKTGKTILELPGYMPPEQFLAVLKYVAD 150 (182)
T ss_pred EEEEcCCCCEEEecCCCCCHHHHHHHHHHHHH
Confidence 9999 67788888999999998877765543
No 131
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.53 E-value=1.8e-07 Score=76.55 Aligned_cols=68 Identities=24% Similarity=0.505 Sum_probs=51.3
Q ss_pred CCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC------CcEEEEEeCCC----------------------ChhhHhhc
Q 021221 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS------IPHFAIEESAI----------------------RPSILSKY 131 (316)
Q Consensus 80 ~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~------~~~v~~~~~~~----------------------~~~l~~~~ 131 (316)
.+|.+.++|.|.|||+|+.+-|.+.++.+...+ ++++..|...+ .++++.+|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 579999999999999999999998888776543 23333332211 13788999
Q ss_pred CCCccceEEEE--eCcee
Q 021221 132 GVHGFPTLFLL--NSSMR 147 (316)
Q Consensus 132 ~I~~~Pti~l~--~g~~~ 147 (316)
+|.++|++++. +|+.+
T Consensus 112 ~v~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVV 129 (157)
T ss_pred ccCcCceeEEecCCCCEe
Confidence 99999999999 66554
No 132
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.52 E-value=3.6e-07 Score=77.98 Aligned_cols=55 Identities=13% Similarity=0.251 Sum_probs=44.8
Q ss_pred CCcceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC--CcEEEE
Q 021221 56 QDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAI 118 (316)
Q Consensus 56 ~~~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~--~~~v~~ 118 (316)
+..+..++|+.+++.+. .+++++|.|||+||++|+ ..|.++++.++|.+ ...+++
T Consensus 7 ~f~~~~~~G~~v~Ls~~-------~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~ 63 (183)
T PRK10606 7 TTVVTTIDGEVTTLEKY-------AGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGF 63 (183)
T ss_pred CcEeECCCCCEEeHHHh-------CCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEe
Confidence 34556678888888888 689999999999999997 48899999999974 455555
No 133
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.43 E-value=1e-06 Score=71.56 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=39.7
Q ss_pred cceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChH-HHhhhHHHHHHHHHcCC
Q 021221 58 IVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPF-SRNFRPSFSVLSSLYSS 112 (316)
Q Consensus 58 ~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~-Ck~~~p~~~~la~~~~~ 112 (316)
.+...+|+.+++.+. .+++++|.||++||++ |....+.++++.+.+.+
T Consensus 6 ~l~~~~g~~~~l~~~-------~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~ 54 (142)
T cd02968 6 TLTDQDGRPVTLSDL-------KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGA 54 (142)
T ss_pred EEEcCCCCEEchHHh-------CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhH
Confidence 344456777777766 6789999999999998 99999999999998864
No 134
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.42 E-value=2.2e-06 Score=75.03 Aligned_cols=82 Identities=24% Similarity=0.449 Sum_probs=64.3
Q ss_pred CCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEE-eC---------CCChhhHhhcCCCccceEEEE--eC-ce
Q 021221 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIE-ES---------AIRPSILSKYGVHGFPTLFLL--NS-SM 146 (316)
Q Consensus 80 ~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~-~~---------~~~~~l~~~~~I~~~Pti~l~--~g-~~ 146 (316)
.++.-|+.||.+.|++|+.+.|+++.+++.| ++..+.+. |. -.+..+++++||..+|+++++ ++ +.
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~ 197 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKW 197 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeE
Confidence 5688899999999999999999999999999 54444432 11 135789999999999999999 34 33
Q ss_pred eEEEeCCCCHHHHHHH
Q 021221 147 RVRYHGSRTLDSLVAF 162 (316)
Q Consensus 147 ~~~~~G~~~~~~l~~f 162 (316)
...-.|..+.++|.+=
T Consensus 198 ~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 198 YPVSQGFMSLDELEDR 213 (215)
T ss_pred EEEeeecCCHHHHHHh
Confidence 4445689999998763
No 135
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.41 E-value=1.3e-06 Score=59.20 Aligned_cols=59 Identities=37% Similarity=0.817 Sum_probs=43.5
Q ss_pred EEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhH---hhcCCCccceEEEEeC
Q 021221 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSIL---SKYGVHGFPTLFLLNS 144 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~---~~~~I~~~Pti~l~~g 144 (316)
++.||++||++|+++.+.++++.....++. +...+++...... ..+++.++|+++++++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~ 62 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVK-FEAVDVDEDPALEKELKRYGVGGVPTLVVFGP 62 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcE-EEEEEcCCChHHhhHHHhCCCccccEEEEEeC
Confidence 578999999999999999999833333444 4444555555444 3899999999999943
No 136
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.39 E-value=1.8e-06 Score=69.88 Aligned_cols=90 Identities=18% Similarity=0.275 Sum_probs=64.7
Q ss_pred ceEEeCCcccHHHHHhHHhccCCCeEEEEEE-cCCChHHHhhhHHHHHHHHHcC--CCcEEEEEeC--------------
Q 021221 59 VGVIEGDEVSLQMALNMVHKNSHEYVAVLFY-ASWCPFSRNFRPSFSVLSSLYS--SIPHFAIEES-------------- 121 (316)
Q Consensus 59 v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fy-a~WC~~Ck~~~p~~~~la~~~~--~~~~v~~~~~-------------- 121 (316)
+..++++.+++.++ .+++++|.|| +.||+.|....|.+.++.+++. ++.++.+...
T Consensus 7 l~~~~g~~~~l~~~-------~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~ 79 (140)
T cd02971 7 LPATDGGEVSLSDF-------KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGG 79 (140)
T ss_pred eccCCCcEEehHHh-------CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccC
Confidence 34456777778777 6899999999 7899999999999999998873 3333333211
Q ss_pred -------CCChhhHhhcCCCccc---------eEEEE--eCceeEEEeCCCC
Q 021221 122 -------AIRPSILSKYGVHGFP---------TLFLL--NSSMRVRYHGSRT 155 (316)
Q Consensus 122 -------~~~~~l~~~~~I~~~P---------ti~l~--~g~~~~~~~G~~~ 155 (316)
|....+.+.||+...| +++++ +|+.+..+.|...
T Consensus 80 ~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 80 LNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred CCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 1223667788887665 67777 5777777777643
No 137
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.39 E-value=3.3e-06 Score=66.64 Aligned_cols=98 Identities=15% Similarity=0.178 Sum_probs=72.6
Q ss_pred cHHHHHhHHhccCCCeEEEEEEcC----CChHHHhhh--HHHHHHHHHcCCCcEEEEEeC-CCChhhHhhcCCCccceEE
Q 021221 68 SLQMALNMVHKNSHEYVAVLFYAS----WCPFSRNFR--PSFSVLSSLYSSIPHFAIEES-AIRPSILSKYGVHGFPTLF 140 (316)
Q Consensus 68 ~~~~~~~~i~~~~~~~vlV~Fya~----WC~~Ck~~~--p~~~~la~~~~~~~~v~~~~~-~~~~~l~~~~~I~~~Pti~ 140 (316)
+++++++.. +++.|.++|++|++ ||.+|+... |.+.++-+. +.+.++.+-. .+..+++..+++.++|++.
T Consensus 5 s~~eAl~~a-k~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~ 81 (116)
T cd02991 5 TYSQALNDA-KQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLA 81 (116)
T ss_pred cHHHHHHHH-HhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEE
Confidence 366665544 56889999999999 999998773 555554432 3445554432 2446799999999999999
Q ss_pred EE---eC--ceeEEEeCCCCHHHHHHHHHHhhC
Q 021221 141 LL---NS--SMRVRYHGSRTLDSLVAFYSDVTA 168 (316)
Q Consensus 141 l~---~g--~~~~~~~G~~~~~~l~~fi~~~~~ 168 (316)
++ ++ +.+.+..|..+.++|...+.....
T Consensus 82 ~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 82 MIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred EEEecCCceEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 98 33 346789999999999999987654
No 138
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.38 E-value=1e-06 Score=63.71 Aligned_cols=69 Identities=13% Similarity=0.282 Sum_probs=45.5
Q ss_pred EEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhh-----cCCCccceEEEE-eCceeEEEeCCCCHHH
Q 021221 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSK-----YGVHGFPTLFLL-NSSMRVRYHGSRTLDS 158 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~-----~~I~~~Pti~l~-~g~~~~~~~G~~~~~~ 158 (316)
++.||++||++|+++++.++++.-.|. ..|.+.++..... +++.++|+++ + +|..+. ..+..+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~~~------~idi~~~~~~~~~~~~~~~~~~~vP~i~-~~~g~~l~----~~~~~~ 70 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAAYE------WVDIEEDEGAADRVVSVNNGNMTVPTVK-FADGSFLT----NPSAAQ 70 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCceE------EEeCcCCHhHHHHHHHHhCCCceeCEEE-ECCCeEec----CCCHHH
Confidence 678999999999999999987754432 2334344444444 3899999984 5 554322 345556
Q ss_pred HHHHHH
Q 021221 159 LVAFYS 164 (316)
Q Consensus 159 l~~fi~ 164 (316)
+.+.++
T Consensus 71 ~~~~l~ 76 (77)
T TIGR02200 71 VKAKLQ 76 (77)
T ss_pred HHHHhh
Confidence 666554
No 139
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.38 E-value=4.1e-06 Score=72.72 Aligned_cols=96 Identities=14% Similarity=0.232 Sum_probs=67.5
Q ss_pred cccHHHHHhHHhccCCCeEEE-EEEcCCChHHHhhhHHHHHHHHHcCC--CcEEEEE-----------------------
Q 021221 66 EVSLQMALNMVHKNSHEYVAV-LFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIE----------------------- 119 (316)
Q Consensus 66 ~~~~~~~~~~i~~~~~~~vlV-~Fya~WC~~Ck~~~p~~~~la~~~~~--~~~v~~~----------------------- 119 (316)
.+++.+. .++.++| .||++||+.|....+.|.++.++|.+ ...+++.
T Consensus 19 ~v~l~d~-------~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~ 91 (202)
T PRK13190 19 PIDLSKY-------KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIP 91 (202)
T ss_pred cEeHHHh-------CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCce
Confidence 4566666 4666655 68999999999999999999888753 3333331
Q ss_pred ---eCCCChhhHhhcCCC------ccceEEEE--eCceeEEE----eCCCCHHHHHHHHHHhhC
Q 021221 120 ---ESAIRPSILSKYGVH------GFPTLFLL--NSSMRVRY----HGSRTLDSLVAFYSDVTA 168 (316)
Q Consensus 120 ---~~~~~~~l~~~~~I~------~~Pti~l~--~g~~~~~~----~G~~~~~~l~~fi~~~~~ 168 (316)
-+|.+..+++.|||. .+|+++++ +|+..... .+.++.+++...++...-
T Consensus 92 fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 92 FPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred EEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 112345788899984 58999999 45544333 356799999998887543
No 140
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=6e-08 Score=78.64 Aligned_cols=52 Identities=13% Similarity=0.111 Sum_probs=48.1
Q ss_pred ccCCCccccccCCcccCChhhhhchHHHHHHHHHHHH----------------HHhHHhhhhhHhHhhcccee
Q 021221 185 EKHNNTEEESCPFSWARSPENLLQQETYLALATAFVL----------------LRLVYIFLPTLLIFAQFTWR 241 (316)
Q Consensus 185 ~~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~~----------------~~~~i~~~Ptl~~~~~~~~~ 241 (316)
+..++|+| +| +|||+|+-+ .|..++++..|.+ .+|.|..+||++.|.+|.-+
T Consensus 61 ~~PVlVdF-~A--~WCgPCk~l--~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 61 DVPVLVDF-HA--EWCGPCKML--GPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFKNGEKV 128 (150)
T ss_pred CCCEEEEE-ec--CcCccHhHh--hHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEECCEEe
Confidence 56699999 99 999999999 9999999999854 99999999999999999965
No 141
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.33 E-value=7.3e-08 Score=73.94 Aligned_cols=49 Identities=12% Similarity=-0.003 Sum_probs=44.0
Q ss_pred cCCCccccccCCcccCChhhhhchHHHHHHHHHHH----------------HHHhHHhhhhhHhHhhccc
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFLPTLLIFAQFT 239 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~----------------~~~~~i~~~Ptl~~~~~~~ 239 (316)
..+++.| ++ |||++|+.+ .|.|..+|..+. +.+++|.+|||+.+|.+|.
T Consensus 19 ~~~~v~f-~a--~wC~~C~~~--~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 83 (101)
T cd03003 19 EIWFVNF-YS--PRCSHCHDL--APTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSGM 83 (101)
T ss_pred CeEEEEE-EC--CCChHHHHh--HHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcCCC
Confidence 4578888 99 999999999 999999999873 4889999999999999886
No 142
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.31 E-value=5.6e-06 Score=70.97 Aligned_cols=88 Identities=8% Similarity=0.130 Sum_probs=64.8
Q ss_pred CCCeEEEEEE-cCCChHHHhhhHHHHHHHHHcCC--CcEEEEEe------------------------CCCChhhHhhcC
Q 021221 80 SHEYVAVLFY-ASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEE------------------------SAIRPSILSKYG 132 (316)
Q Consensus 80 ~~~~vlV~Fy-a~WC~~Ck~~~p~~~~la~~~~~--~~~v~~~~------------------------~~~~~~l~~~~~ 132 (316)
.++++++.|| +.||+.|....+.|.++.++|.+ ...+++.. +|.+..+++.||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 5789999999 99999999999999999998853 33333321 123457889999
Q ss_pred C----Ccc--ceEEEE--eCceeEEEe----CCCCHHHHHHHHHHhh
Q 021221 133 V----HGF--PTLFLL--NSSMRVRYH----GSRTLDSLVAFYSDVT 167 (316)
Q Consensus 133 I----~~~--Pti~l~--~g~~~~~~~----G~~~~~~l~~fi~~~~ 167 (316)
+ .++ |+++++ +|+.+..+. ..++.+++.+.++..-
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq 156 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ 156 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 8 366 999999 566655543 2468888888886543
No 143
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.27 E-value=3.6e-06 Score=67.70 Aligned_cols=73 Identities=15% Similarity=0.306 Sum_probs=46.5
Q ss_pred ccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhc---CCCccceEEEE--eCceeEEEe
Q 021221 78 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKY---GVHGFPTLFLL--NSSMRVRYH 151 (316)
Q Consensus 78 ~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~---~I~~~Pti~l~--~g~~~~~~~ 151 (316)
....+..++.|..+|||.|+...|.+.++++..++ ..+.+...|.+.++..+| |..++||++++ +|+++.++.
T Consensus 38 ~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~-i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~wg 115 (129)
T PF14595_consen 38 SIQKPYNILVITETWCGDCARNVPVLAKIAEANPN-IEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRWG 115 (129)
T ss_dssp T--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT-EEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEE
T ss_pred hcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCC-CeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEEc
Confidence 34567789999999999999999999999998765 344444444556665554 78899999999 345555554
No 144
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.25 E-value=9.1e-06 Score=81.21 Aligned_cols=149 Identities=12% Similarity=0.104 Sum_probs=102.7
Q ss_pred CCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEE--eCc-eeEEEeCCCCH
Q 021221 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL--NSS-MRVRYHGSRTL 156 (316)
Q Consensus 80 ~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~--~g~-~~~~~~G~~~~ 156 (316)
.+...++.|+.+-|..|..+...++++++.- +...+...+...+.+++++|+|...|++.++ +|+ .-++|.|--.=
T Consensus 365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s-~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G 443 (555)
T TIGR03143 365 ENPVTLLLFLDGSNEKSAELQSFLGEFASLS-EKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSG 443 (555)
T ss_pred CCCEEEEEEECCCchhhHHHHHHHHHHHhcC-CcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCcc
Confidence 3344677888889999999999999999654 4455555666677899999999999999998 333 34899997777
Q ss_pred HHHHHHHHHhhC---CCCCCCcccccccCc-cccCCCccccccCCcccCChhhhhchHHHHHHHHHH-------------
Q 021221 157 DSLVAFYSDVTA---SLDKISPDKVGKASN-HEKHNNTEEESCPFSWARSPENLLQQETYLALATAF------------- 219 (316)
Q Consensus 157 ~~l~~fi~~~~~---~~~~~~~~~~~~~~~-~~~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f------------- 219 (316)
.++..||...+. .....+ ++..+... .++...++.+.. |+|.+|.+. ......+|..-
T Consensus 444 ~Ef~s~i~~i~~~~~~~~~l~-~~~~~~i~~~~~~~~i~v~~~--~~C~~Cp~~--~~~~~~~~~~~~~i~~~~i~~~~~ 518 (555)
T TIGR03143 444 HELNSFILALYNAAGPGQPLG-EELLEKIKKITKPVNIKIGVS--LSCTLCPDV--VLAAQRIASLNPNVEAEMIDVSHF 518 (555)
T ss_pred HhHHHHHHHHHHhcCCCCCCC-HHHHHHHHhcCCCeEEEEEEC--CCCCCcHHH--HHHHHHHHHhCCCceEEEEECccc
Confidence 777777776654 322222 22222111 123333333256 999999998 66666666653
Q ss_pred --HHHHhHHhhhhhHhH
Q 021221 220 --VLLRLVYIFLPTLLI 234 (316)
Q Consensus 220 --~~~~~~i~~~Ptl~~ 234 (316)
+..+|+|.+.|++..
T Consensus 519 ~~~~~~~~v~~vP~~~i 535 (555)
T TIGR03143 519 PDLKDEYGIMSVPAIVV 535 (555)
T ss_pred HHHHHhCCceecCEEEE
Confidence 226899999999765
No 145
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.24 E-value=1.3e-07 Score=72.60 Aligned_cols=55 Identities=22% Similarity=0.287 Sum_probs=45.4
Q ss_pred cCCCccccccCCcccCChhhhhchHHHHHHHHHHH----------------HHHhHHhhhhhHhHhhccceehhhh
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFLPTLLIFAQFTWRRLIR 245 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~----------------~~~~~i~~~Ptl~~~~~~~~~~~~~ 245 (316)
+.+++.| ++ |||++|+.+ .|.++++|..|. +.+++|.+|||+.+|.+|.-.++.+
T Consensus 19 ~~vlV~F-~a--~WC~~C~~~--~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g~~~~~~G 89 (100)
T cd02999 19 DYTAVLF-YA--SWCPFSASF--RPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNSTPRVRYNG 89 (100)
T ss_pred CEEEEEE-EC--CCCHHHHhH--hHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCCceeEecC
Confidence 4478889 99 999999999 999999998863 3789999999999999884333333
No 146
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.20 E-value=3.5e-06 Score=61.92 Aligned_cols=59 Identities=17% Similarity=0.415 Sum_probs=42.0
Q ss_pred EEEEEcCCChHHHhhhHHHHHHHHHcCC-CcEEEEEeCCCCh----hhHhhcCCCccceEEEEeCce
Q 021221 85 AVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESAIRP----SILSKYGVHGFPTLFLLNSSM 146 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~la~~~~~-~~~v~~~~~~~~~----~l~~~~~I~~~Pti~l~~g~~ 146 (316)
++.|+++|||+|+++.+.++++. .++ ...+.++..+... .+.+.+|+.++|+++ ++|+.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~-i~g~~ 64 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF-INGKF 64 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE-ECCEE
Confidence 47899999999999999999986 222 3455554332222 367778999999984 37653
No 147
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.20 E-value=1e-05 Score=72.93 Aligned_cols=87 Identities=20% Similarity=0.326 Sum_probs=65.6
Q ss_pred CCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEE-eCceeEEEeC------
Q 021221 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHG------ 152 (316)
Q Consensus 80 ~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g~~~~~~~G------ 152 (316)
.+..|||+||-+.++.|+.|...+..||.+|+.+.++.+..... + +..+|.+..+||+++| +|..+..+.|
T Consensus 145 ~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~-~-~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g 222 (265)
T PF02114_consen 145 KSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKC-P-ASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLG 222 (265)
T ss_dssp TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGC-C-TTTTS-TTC-SEEEEEETTEEEEEECTGGGCT-
T ss_pred CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhcc-C-cccCCcccCCCEEEEEECCEEEEeEEehHHhcC
Confidence 35689999999999999999999999999999988887754321 2 7789999999999999 8887777765
Q ss_pred -CCCHHHHHHHHHHhhC
Q 021221 153 -SRTLDSLVAFYSDVTA 168 (316)
Q Consensus 153 -~~~~~~l~~fi~~~~~ 168 (316)
..+.++|..|+.++--
T Consensus 223 ~df~~~dlE~~L~~~G~ 239 (265)
T PF02114_consen 223 DDFFTEDLEAFLIEYGV 239 (265)
T ss_dssp TT--HHHHHHHHHTTTS
T ss_pred CCCCHHHHHHHHHHcCC
Confidence 3466788888886543
No 148
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.17 E-value=9.1e-06 Score=60.33 Aligned_cols=77 Identities=16% Similarity=0.263 Sum_probs=54.9
Q ss_pred EEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCC----ChhhHhhcC--CCccceEEEEeCceeEEEeCCCCHH
Q 021221 84 VAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAI----RPSILSKYG--VHGFPTLFLLNSSMRVRYHGSRTLD 157 (316)
Q Consensus 84 vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~----~~~l~~~~~--I~~~Pti~l~~g~~~~~~~G~~~~~ 157 (316)
-++.|+.+||++|++....++++...+.++....+ |.+. ..++.+..+ +.++|++++ +|+.+ | ..+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~i-di~~~~~~~~el~~~~~~~~~~vP~ifi-~g~~i----g--g~~ 73 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYV-DIHAEGISKADLEKTVGKPVETVPQIFV-DQKHI----G--GCT 73 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEE-ECCCChHHHHHHHHHHCCCCCcCCEEEE-CCEEE----c--CHH
Confidence 37889999999999999999999987766544433 3322 234555454 589999864 77543 2 457
Q ss_pred HHHHHHHHhhC
Q 021221 158 SLVAFYSDVTA 168 (316)
Q Consensus 158 ~l~~fi~~~~~ 168 (316)
+|.++++.+++
T Consensus 74 ~~~~~~~~~~~ 84 (85)
T PRK11200 74 DFEAYVKENLG 84 (85)
T ss_pred HHHHHHHHhcc
Confidence 88888887765
No 149
>PRK15000 peroxidase; Provisional
Probab=98.16 E-value=1.7e-05 Score=68.72 Aligned_cols=87 Identities=13% Similarity=0.282 Sum_probs=64.7
Q ss_pred CCCeEEEEEEcC-CChHHHhhhHHHHHHHHHcCC--CcEEEEEe---------------------------CCCChhhHh
Q 021221 80 SHEYVAVLFYAS-WCPFSRNFRPSFSVLSSLYSS--IPHFAIEE---------------------------SAIRPSILS 129 (316)
Q Consensus 80 ~~~~vlV~Fya~-WC~~Ck~~~p~~~~la~~~~~--~~~v~~~~---------------------------~~~~~~l~~ 129 (316)
.+++++|.||+. ||+.|....+.|.++.++|.+ ...+++.- +|...++++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 578999999995 999999999999999998863 33333321 123346788
Q ss_pred hcCCC------ccceEEEE--eCceeEEEeC----CCCHHHHHHHHHHh
Q 021221 130 KYGVH------GFPTLFLL--NSSMRVRYHG----SRTLDSLVAFYSDV 166 (316)
Q Consensus 130 ~~~I~------~~Pti~l~--~g~~~~~~~G----~~~~~~l~~fi~~~ 166 (316)
.||+. ++|+.+++ +|+....+.| .++.+++.+.++..
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 89997 79999999 5666665554 36788888888753
No 150
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.11 E-value=2.4e-05 Score=61.80 Aligned_cols=66 Identities=21% Similarity=0.309 Sum_probs=42.5
Q ss_pred cCCCeEEEEEEcC-------CChHHHhhhHHHHHHHHHcCCC-cEEEEE--eC----CCChhhHh--hcCCCccceEEEE
Q 021221 79 NSHEYVAVLFYAS-------WCPFSRNFRPSFSVLSSLYSSI-PHFAIE--ES----AIRPSILS--KYGVHGFPTLFLL 142 (316)
Q Consensus 79 ~~~~~vlV~Fya~-------WC~~Ck~~~p~~~~la~~~~~~-~~v~~~--~~----~~~~~l~~--~~~I~~~Pti~l~ 142 (316)
+++++++|.|+++ |||.|....|.+++.-...++- ..+.+. +- +.+...-. +++|+++||++-+
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~ 96 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRW 96 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEEC
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEE
Confidence 5678999999965 9999999999999988876653 333222 11 11223444 5999999999999
Q ss_pred eC
Q 021221 143 NS 144 (316)
Q Consensus 143 ~g 144 (316)
++
T Consensus 97 ~~ 98 (119)
T PF06110_consen 97 ET 98 (119)
T ss_dssp TS
T ss_pred CC
Confidence 43
No 151
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.8e-06 Score=74.24 Aligned_cols=77 Identities=16% Similarity=0.296 Sum_probs=65.5
Q ss_pred cCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEE-eCceeEEEeCCCCH
Q 021221 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTL 156 (316)
Q Consensus 79 ~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g~~~~~~~G~~~~ 156 (316)
+.++..++.|||+||..|+.|...++.+++.+++...+ ..+.++.++++..+.|.+.|++.++ .|+.+.+..|....
T Consensus 15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~-k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~ 92 (227)
T KOG0911|consen 15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFL-KLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPP 92 (227)
T ss_pred hccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheee-eehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcH
Confidence 37889999999999999999999999999988554444 4466788999999999999999999 88888888776543
No 152
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.09 E-value=4.7e-07 Score=69.28 Aligned_cols=52 Identities=21% Similarity=0.156 Sum_probs=43.6
Q ss_pred CCccccccCCcccCChhhhhchHHHHHHHHHHH-----------------HHHhHHhhhhhHhHhhccceehhh
Q 021221 188 NNTEEESCPFSWARSPENLLQQETYLALATAFV-----------------LLRLVYIFLPTLLIFAQFTWRRLI 244 (316)
Q Consensus 188 ~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~-----------------~~~~~i~~~Ptl~~~~~~~~~~~~ 244 (316)
+++.| ++ |||++|+.+ .|.|..++..+. +.+++|.++||+.++.+|...++.
T Consensus 19 ~lv~f-~a--~wC~~C~~~--~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~ 87 (101)
T cd02994 19 WMIEF-YA--PWCPACQQL--QPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAKDGVFRRYQ 87 (101)
T ss_pred EEEEE-EC--CCCHHHHHH--hHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeCCCCEEEec
Confidence 67888 99 999999999 999999998752 378999999999999888633333
No 153
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.08 E-value=4.1e-07 Score=70.64 Aligned_cols=49 Identities=18% Similarity=0.142 Sum_probs=42.3
Q ss_pred cCCCccccccCCcccCChhhhhchHHHHHHHHHHH----------------------HHHhHHhhhhhHhHhhccc
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------------LLRLVYIFLPTLLIFAQFT 239 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~----------------------~~~~~i~~~Ptl~~~~~~~ 239 (316)
..+++.| ++ |||++|+.+ .|.|..+|..+. +.+++|.+|||+.+|.+|.
T Consensus 19 ~~vlv~F-~a--~wC~~C~~~--~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 19 ELVLVNF-YA--DWCRFSQML--HPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKLFRNGM 89 (108)
T ss_pred CEEEEEE-EC--CCCHHHHhh--HHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEEEeCCc
Confidence 3467888 99 999999999 999999997541 3789999999999999887
No 154
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.08 E-value=4.8e-05 Score=66.11 Aligned_cols=96 Identities=10% Similarity=0.220 Sum_probs=64.6
Q ss_pred cccHHHHHhHHhccCCC-eEEEEEEcCCChHHHhhhHHHHHHHHHcCC--CcEEEEE--e--------------------
Q 021221 66 EVSLQMALNMVHKNSHE-YVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIE--E-------------------- 120 (316)
Q Consensus 66 ~~~~~~~~~~i~~~~~~-~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~--~~~v~~~--~-------------------- 120 (316)
.+++.+. ..++ .+++.|+++||+.|....+.+.++.++|.+ ...+++. +
T Consensus 16 ~~~l~d~------~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~ 89 (203)
T cd03016 16 PIKFHDY------LGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIP 89 (203)
T ss_pred cEeHHHH------cCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCc
Confidence 3556665 2324 456689999999999999999999998853 3444432 1
Q ss_pred ----CCCChhhHhhcCCC----c----cceEEEE--eCceeEEEeC----CCCHHHHHHHHHHhh
Q 021221 121 ----SAIRPSILSKYGVH----G----FPTLFLL--NSSMRVRYHG----SRTLDSLVAFYSDVT 167 (316)
Q Consensus 121 ----~~~~~~l~~~~~I~----~----~Pti~l~--~g~~~~~~~G----~~~~~~l~~fi~~~~ 167 (316)
+|.+..+++.||+. + .|+++++ +|+....+.+ .++.+++.+.|+...
T Consensus 90 fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq 154 (203)
T cd03016 90 FPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQ 154 (203)
T ss_pred eeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 11234678889986 2 3567888 5666555544 467888888887653
No 155
>PLN02309 5'-adenylylsulfate reductase
Probab=98.07 E-value=3.4e-07 Score=88.29 Aligned_cols=70 Identities=19% Similarity=0.289 Sum_probs=54.5
Q ss_pred cccCCCccccccCCcccCChhhhhchHHHHHHHHHHHH------------------H-HhHHhhhhhHhHhhccceehhh
Q 021221 184 HEKHNNTEEESCPFSWARSPENLLQQETYLALATAFVL------------------L-RLVYIFLPTLLIFAQFTWRRLI 244 (316)
Q Consensus 184 ~~~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~~------------------~-~~~i~~~Ptl~~~~~~~~~~~~ 244 (316)
.+..++|.| |+ |||++|+.+ .|.|+.+|..|.. . +++|.+|||+++|.+|.
T Consensus 364 ~~k~vlV~F-yA--pWC~~Cq~m--~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil~f~~g~----- 433 (457)
T PLN02309 364 RKEPWLVVL-YA--PWCPFCQAM--EASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILLFPKNS----- 433 (457)
T ss_pred CCCeEEEEE-EC--CCChHHHHH--HHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEEEEEeCCC-----
Confidence 355578899 99 999999999 9999999998731 2 58999999999999987
Q ss_pred hcccccccchhhhHHH--HHHHHHH-HHhcc
Q 021221 245 RNLKLGSLLEHPRTYL--NRAIQLF-KTLNE 272 (316)
Q Consensus 245 ~~~~~~~~~~~~~~~~--~r~~~~~-~~l~~ 272 (316)
..+..|. .|..+.+ +|+++
T Consensus 434 ---------~~~v~Y~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 434 ---------SRPIKYPSEKRDVDSLLSFVNS 455 (457)
T ss_pred ---------CCeeecCCCCcCHHHHHHHHHH
Confidence 4455665 3555544 77664
No 156
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.07 E-value=3.7e-07 Score=71.19 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=42.5
Q ss_pred ccCCCccccccCCcccCChhhhhchHHHHHHHHHHHH------------------H-HhHHhhhhhHhHhhccc
Q 021221 185 EKHNNTEEESCPFSWARSPENLLQQETYLALATAFVL------------------L-RLVYIFLPTLLIFAQFT 239 (316)
Q Consensus 185 ~~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~~------------------~-~~~i~~~Ptl~~~~~~~ 239 (316)
+..+++.| ++ |||++|+.+ .|.|..+|..+.. . .+++.+|||+.+|.+|.
T Consensus 21 ~k~vlv~f-~a--~wC~~C~~~--~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f~~~~ 89 (109)
T cd02993 21 NQSTLVVL-YA--PWCPFCQAM--EASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFFPKNS 89 (109)
T ss_pred CCCEEEEE-EC--CCCHHHHHH--hHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEEcCCC
Confidence 45678888 99 999999999 9999999987731 2 48899999999998876
No 157
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.05 E-value=6.6e-05 Score=65.78 Aligned_cols=101 Identities=11% Similarity=0.151 Sum_probs=68.6
Q ss_pred ceEEeCCcccHHHHHhHHhccCCCe-EEEEEEcCCChHHHhhhHHHHHHHHHcC--CCcEEEEEe---------------
Q 021221 59 VGVIEGDEVSLQMALNMVHKNSHEY-VAVLFYASWCPFSRNFRPSFSVLSSLYS--SIPHFAIEE--------------- 120 (316)
Q Consensus 59 v~~l~~~~~~~~~~~~~i~~~~~~~-vlV~Fya~WC~~Ck~~~p~~~~la~~~~--~~~~v~~~~--------------- 120 (316)
+...+|+...+++. .++. +|+.|+++|||.|....+.|.++.++|. +...+++.-
T Consensus 13 l~t~~G~~~~~~~~-------~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~ 85 (215)
T PRK13599 13 VVTTQGVKRLPEDY-------AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKD 85 (215)
T ss_pred eECCCCcEecHHHH-------CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHH
Confidence 33445555444554 4555 4689999999999999999999999885 333333321
Q ss_pred -----------CCCChhhHhhcCCC-------ccceEEEE--eCceeEEEe----CCCCHHHHHHHHHHh
Q 021221 121 -----------SAIRPSILSKYGVH-------GFPTLFLL--NSSMRVRYH----GSRTLDSLVAFYSDV 166 (316)
Q Consensus 121 -----------~~~~~~l~~~~~I~-------~~Pti~l~--~g~~~~~~~----G~~~~~~l~~fi~~~ 166 (316)
.|.+..+++.||+. ..|+++++ +|+....+. ..++.+++.+.|+..
T Consensus 86 ~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 86 NTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred hcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 11234678889983 68999999 566554432 246788888888764
No 158
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.04 E-value=4.4e-05 Score=68.31 Aligned_cols=88 Identities=24% Similarity=0.365 Sum_probs=67.1
Q ss_pred CCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEE-eCC---------CChhhHhhcCCCccceEEEE--eCce-
Q 021221 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIE-ESA---------IRPSILSKYGVHGFPTLFLL--NSSM- 146 (316)
Q Consensus 80 ~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~-~~~---------~~~~l~~~~~I~~~Pti~l~--~g~~- 146 (316)
.++.-++.||.+-|++|+++.|+++.++++|. +..+.+. |.. .+..+++++||..+|+++++ +.+.
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg-i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG-ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 45688999999999999999999999999985 3333332 211 12458899999999999999 3333
Q ss_pred eEEEeCCCCHHHHHHHHHHhhC
Q 021221 147 RVRYHGSRTLDSLVAFYSDVTA 168 (316)
Q Consensus 147 ~~~~~G~~~~~~l~~fi~~~~~ 168 (316)
...-.|..+.++|.+=|...+.
T Consensus 228 ~pv~~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 228 SPLAYGFISQDELKERILNVLT 249 (256)
T ss_pred EEEeeccCCHHHHHHHHHHHHh
Confidence 3344589999999887776654
No 159
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.03 E-value=1.5e-05 Score=66.24 Aligned_cols=70 Identities=20% Similarity=0.389 Sum_probs=43.7
Q ss_pred ccCCCeEEEEEEcCCChHHHhhhH-HH--HHHHHHcCC-CcEEEEEeCCCChhhHhhc--------CCCccceEEEE--e
Q 021221 78 KNSHEYVAVLFYASWCPFSRNFRP-SF--SVLSSLYSS-IPHFAIEESAIRPSILSKY--------GVHGFPTLFLL--N 143 (316)
Q Consensus 78 ~~~~~~vlV~Fya~WC~~Ck~~~p-~~--~~la~~~~~-~~~v~~~~~~~~~~l~~~~--------~I~~~Pti~l~--~ 143 (316)
+..+|+++|.++++||+.|+.|.. .| .++++.+.. .+-|.+ |.++.+++...| |.-|+|+.++. +
T Consensus 34 k~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~Vkv-Dree~Pdid~~y~~~~~~~~~~gGwPl~vfltPd 112 (163)
T PF03190_consen 34 KKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKV-DREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPD 112 (163)
T ss_dssp HHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEE-ETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TT
T ss_pred HhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEe-ccccCccHHHHHHHHHHHhcCCCCCCceEEECCC
Confidence 568899999999999999999974 33 234444332 344444 677889998888 88999999999 6
Q ss_pred CceeE
Q 021221 144 SSMRV 148 (316)
Q Consensus 144 g~~~~ 148 (316)
|+++.
T Consensus 113 g~p~~ 117 (163)
T PF03190_consen 113 GKPFF 117 (163)
T ss_dssp S-EEE
T ss_pred CCeee
Confidence 66544
No 160
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.02 E-value=5.5e-07 Score=86.96 Aligned_cols=50 Identities=20% Similarity=0.311 Sum_probs=43.5
Q ss_pred ccCCCccccccCCcccCChhhhhchHHHHHHHHHHH-------------------HHHhHHhhhhhHhHhhccc
Q 021221 185 EKHNNTEEESCPFSWARSPENLLQQETYLALATAFV-------------------LLRLVYIFLPTLLIFAQFT 239 (316)
Q Consensus 185 ~~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~-------------------~~~~~i~~~Ptl~~~~~~~ 239 (316)
...+++.| |+ |||++|+.+ .|.|+++|..|. +.+++|.+|||+++|.+|.
T Consensus 371 ~k~VLV~F-yA--pWC~~Ck~m--~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~Fk~g~ 439 (463)
T TIGR00424 371 KEAWLVVL-YA--PWCPFCQAM--EASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILFFPKHS 439 (463)
T ss_pred CCeEEEEE-EC--CCChHHHHH--HHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEEEECCC
Confidence 44578899 99 999999999 999999998862 1468999999999999987
No 161
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.00 E-value=1.4e-06 Score=66.97 Aligned_cols=47 Identities=13% Similarity=0.072 Sum_probs=42.8
Q ss_pred CCCccccccCCcccCChhhhhchHHHHHHHHHHH----------------HHHhHHhhhhhHhHhhcc
Q 021221 187 HNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFLPTLLIFAQF 238 (316)
Q Consensus 187 ~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~----------------~~~~~i~~~Ptl~~~~~~ 238 (316)
.+++.| |+ |||++|+.+ .|.|..+|..|. +.+++|.++||+.+|.+|
T Consensus 21 ~v~v~f-~a--~wC~~C~~~--~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 21 PWLVDF-YA--PWCGPCQAL--LPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred eEEEEE-EC--CCCHHHHHH--HHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcCC
Confidence 578888 99 999999999 999999999873 378999999999999998
No 162
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.00 E-value=7.6e-05 Score=67.09 Aligned_cols=96 Identities=13% Similarity=0.190 Sum_probs=67.6
Q ss_pred cccHHHHHhHHhccCCCeEEEEEE-cCCChHHHhhhHHHHHHHHHcCC--CcEEEEE--e--------------------
Q 021221 66 EVSLQMALNMVHKNSHEYVAVLFY-ASWCPFSRNFRPSFSVLSSLYSS--IPHFAIE--E-------------------- 120 (316)
Q Consensus 66 ~~~~~~~~~~i~~~~~~~vlV~Fy-a~WC~~Ck~~~p~~~~la~~~~~--~~~v~~~--~-------------------- 120 (316)
++++.+. ..++++++.|| +.||+.|....|.|.++.++|.+ ...+++. +
T Consensus 89 ~vsLsd~------~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l 162 (261)
T PTZ00137 89 QFNSSDY------FKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPL 162 (261)
T ss_pred EEeHHHH------cCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCc
Confidence 3566665 24678888888 89999999999999999998853 3333332 1
Q ss_pred -----CCCChhhHhhcCCC-----ccceEEEE--eCceeEEEe----CCCCHHHHHHHHHHhh
Q 021221 121 -----SAIRPSILSKYGVH-----GFPTLFLL--NSSMRVRYH----GSRTLDSLVAFYSDVT 167 (316)
Q Consensus 121 -----~~~~~~l~~~~~I~-----~~Pti~l~--~g~~~~~~~----G~~~~~~l~~fi~~~~ 167 (316)
+|.+..+++.||+. ..|+++++ +|+....+. ..++.+++.+.|+...
T Consensus 163 ~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq 225 (261)
T PTZ00137 163 KFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQ 225 (261)
T ss_pred ceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhc
Confidence 11234788999985 58999999 566655442 3568888888887543
No 163
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.99 E-value=5.8e-05 Score=67.18 Aligned_cols=89 Identities=21% Similarity=0.342 Sum_probs=66.0
Q ss_pred CCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC-CcEEEEEeC--------CCChhhHhhcCCCccceEEEE--eC-cee
Q 021221 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEES--------AIRPSILSKYGVHGFPTLFLL--NS-SMR 147 (316)
Q Consensus 80 ~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~-~~~v~~~~~--------~~~~~l~~~~~I~~~Pti~l~--~g-~~~ 147 (316)
.++.-|+.||.+-|++|+.+.|+++.+++.|.= +..|.+|.. ..+...++++||..+|+++++ +. +..
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~ 221 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVR 221 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEE
Confidence 356889999999999999999999999999853 222333211 113346789999999999999 33 334
Q ss_pred EEEeCCCCHHHHHHHHHHhhC
Q 021221 148 VRYHGSRTLDSLVAFYSDVTA 168 (316)
Q Consensus 148 ~~~~G~~~~~~l~~fi~~~~~ 168 (316)
..-.|..+.++|.+=|.....
T Consensus 222 pv~~G~iS~deL~~Ri~~v~t 242 (248)
T PRK13703 222 PLSYGFITQDDLAKRFLNVST 242 (248)
T ss_pred EEeeccCCHHHHHHHHHHHHh
Confidence 445699999999887776654
No 164
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.99 E-value=1.7e-06 Score=76.09 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=46.9
Q ss_pred cCCCccccccCCcccCChhhhhchHHHHHHHHHHH----------------HHHhHHhhhhhHhHhhccceehhh
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFLPTLLIFAQFTWRRLI 244 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~----------------~~~~~i~~~Ptl~~~~~~~~~~~~ 244 (316)
..+++.| |+ |||++|+.+ .|.|+++|..+. +.+|+|.+|||+.+|.+|....+.
T Consensus 53 ~~vlV~F-yA--pWC~~Ck~~--~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~G~~v~~~ 122 (224)
T PTZ00443 53 GPWFVKF-YA--PWCSHCRKM--APAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTLLLFDKGKMYQYE 122 (224)
T ss_pred CCEEEEE-EC--CCChHHHHH--HHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCEEEEEECCEEEEee
Confidence 4578899 99 999999999 999999999873 389999999999999999765543
No 165
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.98 E-value=3.5e-05 Score=77.04 Aligned_cols=79 Identities=14% Similarity=0.328 Sum_probs=65.1
Q ss_pred CCeE-EEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEEeCceeEEEeCCCCHHHH
Q 021221 81 HEYV-AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSL 159 (316)
Q Consensus 81 ~~~v-lV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~~g~~~~~~~G~~~~~~l 159 (316)
++++ +-.|.+++|++|......+++++...+++. ..+++....++++++|+|.++|++++ ||+. .+.|..+.++|
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~-~~~i~~~~~~~~~~~~~v~~vP~~~i-~~~~--~~~G~~~~~~~ 550 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVE-AEMIDVSHFPDLKDEYGIMSVPAIVV-DDQQ--VYFGKKTIEEM 550 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCce-EEEEECcccHHHHHhCCceecCEEEE-CCEE--EEeeCCCHHHH
Confidence 4565 555689999999999999999999987644 55667778899999999999999987 6653 36698899999
Q ss_pred HHHH
Q 021221 160 VAFY 163 (316)
Q Consensus 160 ~~fi 163 (316)
.++|
T Consensus 551 ~~~~ 554 (555)
T TIGR03143 551 LELI 554 (555)
T ss_pred HHhh
Confidence 8876
No 166
>PHA02278 thioredoxin-like protein
Probab=97.97 E-value=1.2e-06 Score=67.66 Aligned_cols=52 Identities=10% Similarity=-0.061 Sum_probs=43.8
Q ss_pred ccCCCccccccCCcccCChhhhhchHHHHHHHHHH--------------------HHHHhHHhhhhhHhHhhcccee
Q 021221 185 EKHNNTEEESCPFSWARSPENLLQQETYLALATAF--------------------VLLRLVYIFLPTLLIFAQFTWR 241 (316)
Q Consensus 185 ~~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f--------------------~~~~~~i~~~Ptl~~~~~~~~~ 241 (316)
+..+++.| ++ |||++|+.+ .|.++.++..+ +..+++|.+.||+.+|.+|.-+
T Consensus 14 ~~~vvV~F-~A--~WCgpCk~m--~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 14 KKDVIVMI-TQ--DNCGKCEIL--KSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred CCcEEEEE-EC--CCCHHHHhH--HHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEE
Confidence 44578889 99 999999999 99999998652 2368999999999999998754
No 167
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=97.97 E-value=1.3e-06 Score=67.37 Aligned_cols=51 Identities=14% Similarity=0.046 Sum_probs=43.2
Q ss_pred cCCCccccccCCcccCChhhhhchHHHHHHHHHHH------------------HHHhHHhhhhhHhHhhcccee
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYLALATAFV------------------LLRLVYIFLPTLLIFAQFTWR 241 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~------------------~~~~~i~~~Ptl~~~~~~~~~ 241 (316)
+.+++.| ++ +||++|+.+ .|.+..++..|. ..+++|.++||+++|.+|..+
T Consensus 16 k~vvv~F-~a--~wC~~C~~~--~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 16 RLVVLEF-AL--KHSGPSVKI--YPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEKI 84 (103)
T ss_pred CEEEEEE-EC--CCCHhHHHH--hHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeEE
Confidence 3477888 99 999999999 999999998862 257899999999999888743
No 168
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.97 E-value=6.5e-05 Score=61.35 Aligned_cols=33 Identities=15% Similarity=0.333 Sum_probs=29.2
Q ss_pred CCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC
Q 021221 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS 112 (316)
Q Consensus 80 ~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~ 112 (316)
+.+++++.|+.++||+|+++.|.+.++...+++
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~ 36 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD 36 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC
Confidence 467899999999999999999999998877654
No 169
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=97.96 E-value=1e-06 Score=69.02 Aligned_cols=54 Identities=13% Similarity=0.067 Sum_probs=46.8
Q ss_pred cCCCccccccCCcccCChhhhhchHHHHHHHHHHH----------------HHHhHHhhhhhHhHhhccceehhh
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFLPTLLIFAQFTWRRLI 244 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~----------------~~~~~i~~~Ptl~~~~~~~~~~~~ 244 (316)
+.+++.| ++ +||++|+.| .|.++++|..|. ..+++|.+.||+.+|.+|..+...
T Consensus 15 ~~vVV~F-~A--~WCgpCk~m--~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~~~ 84 (114)
T cd02954 15 KVVVIRF-GR--DWDPVCMQM--DEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMKID 84 (114)
T ss_pred CEEEEEE-EC--CCChhHHHH--HHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEEEE
Confidence 3477888 99 999999999 999999998863 389999999999999999875443
No 170
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.93 E-value=0.00012 Score=57.31 Aligned_cols=101 Identities=23% Similarity=0.387 Sum_probs=68.3
Q ss_pred EeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHH-HHcCC-----CcEEEEEeC--CCChhhHhhcCC
Q 021221 62 IEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLS-SLYSS-----IPHFAIEES--AIRPSILSKYGV 133 (316)
Q Consensus 62 l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la-~~~~~-----~~~v~~~~~--~~~~~l~~~~~I 133 (316)
++.++.||++. ....+.++|.|=... +--.-...|.+++ +.... +..+++.|. .+|.+|+++|+|
T Consensus 7 v~LD~~tFdKv-----i~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i 79 (126)
T PF07912_consen 7 VPLDELTFDKV-----IPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKI 79 (126)
T ss_dssp EEESTTHHHHH-----GGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-
T ss_pred eeccceehhhe-----eccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCC
Confidence 45667778777 346699999997543 2223356788888 44332 233444432 257899999999
Q ss_pred --CccceEEEE--eCceeEEE--eCCCCHHHHHHHHHHhhCC
Q 021221 134 --HGFPTLFLL--NSSMRVRY--HGSRTLDSLVAFYSDVTAS 169 (316)
Q Consensus 134 --~~~Pti~l~--~g~~~~~~--~G~~~~~~l~~fi~~~~~~ 169 (316)
..+|.+++| +.+...+| .|..+.++|..|+.++++.
T Consensus 80 ~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~~ 121 (126)
T PF07912_consen 80 DKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTGL 121 (126)
T ss_dssp SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS-
T ss_pred CcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCCe
Confidence 569999999 56778889 8999999999999999873
No 171
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.93 E-value=4.1e-05 Score=67.93 Aligned_cols=85 Identities=18% Similarity=0.311 Sum_probs=60.8
Q ss_pred cCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEE-------------------------------------EeC
Q 021221 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAI-------------------------------------EES 121 (316)
Q Consensus 79 ~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~-------------------------------------~~~ 121 (316)
.+++.+++.|.-+.||+|+++.+.++++.+.--.+.++.. ..|
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c 184 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASC 184 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccc
Confidence 3567889999999999999999999887542000000000 001
Q ss_pred ----CCChhhHhhcCCCccceEEEEeCceeEEEeCCCCHHHHHHHHHHh
Q 021221 122 ----AIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSDV 166 (316)
Q Consensus 122 ----~~~~~l~~~~~I~~~Pti~l~~g~~~~~~~G~~~~~~l~~fi~~~ 166 (316)
+.+..+++++||+++||+++-||+. ..|..+.++|.++|++.
T Consensus 185 ~~~v~~~~~la~~lgi~gTPtiv~~~G~~---~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 185 DVDIADHYALGVQFGVQGTPAIVLSNGTL---VPGYQGPKEMKAFLDEH 230 (232)
T ss_pred cchHHHhHHHHHHcCCccccEEEEcCCeE---eeCCCCHHHHHHHHHHc
Confidence 1234788999999999999548754 38999999999999864
No 172
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.90 E-value=0.00025 Score=55.55 Aligned_cols=93 Identities=12% Similarity=0.220 Sum_probs=77.2
Q ss_pred HhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEE-eCcee-EE----
Q 021221 76 VHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMR-VR---- 149 (316)
Q Consensus 76 i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g~~~-~~---- 149 (316)
+.....+.++|.|.-.|-|.|..|...+.+++....+...+...|.++-+++.+-|++...||+++| +++-+ ..
T Consensus 18 I~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHmkiD~gtg 97 (142)
T KOG3414|consen 18 ILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHMKIDLGTG 97 (142)
T ss_pred HhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCceEEEeeCCC
Confidence 5566789999999999999999999999999999999999999898899999999999999999988 65543 22
Q ss_pred ----EeCC-CCHHHHHHHHHHhhC
Q 021221 150 ----YHGS-RTLDSLVAFYSDVTA 168 (316)
Q Consensus 150 ----~~G~-~~~~~l~~fi~~~~~ 168 (316)
+++. .+.+++++.++....
T Consensus 98 dn~Kin~~~~~kq~~Idiie~iyR 121 (142)
T KOG3414|consen 98 DNNKINFAFEDKQEFIDIIETIYR 121 (142)
T ss_pred CCceEEEEeccHHHHHHHHHHHHH
Confidence 2332 367788888776543
No 173
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.90 E-value=5.9e-05 Score=74.76 Aligned_cols=84 Identities=17% Similarity=0.259 Sum_probs=70.5
Q ss_pred CCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEEeCceeEEEeCCCCHHHHH
Q 021221 81 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLV 160 (316)
Q Consensus 81 ~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~~g~~~~~~~G~~~~~~l~ 160 (316)
+..-+..|+++.||+|......+++++...+++. ....|....++++++|+|.++|++++ |++ ..+.|..+.++|.
T Consensus 116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~-~~~id~~~~~~~~~~~~v~~VP~~~i-~~~--~~~~g~~~~~~~~ 191 (517)
T PRK15317 116 GDFHFETYVSLSCHNCPDVVQALNLMAVLNPNIT-HTMIDGALFQDEVEARNIMAVPTVFL-NGE--EFGQGRMTLEEIL 191 (517)
T ss_pred CCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCce-EEEEEchhCHhHHHhcCCcccCEEEE-CCc--EEEecCCCHHHHH
Confidence 3445889999999999999999999999877654 55557788999999999999999965 665 3477999999999
Q ss_pred HHHHHhhC
Q 021221 161 AFYSDVTA 168 (316)
Q Consensus 161 ~fi~~~~~ 168 (316)
+.+.+..+
T Consensus 192 ~~~~~~~~ 199 (517)
T PRK15317 192 AKLDTGAA 199 (517)
T ss_pred HHHhcccc
Confidence 99887655
No 174
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.90 E-value=0.00019 Score=62.99 Aligned_cols=88 Identities=9% Similarity=0.170 Sum_probs=61.0
Q ss_pred CCCeEE-EEEEcCCChHHHhhhHHHHHHHHHcC--CCcEEEEEe--------------------------CCCChhhHhh
Q 021221 80 SHEYVA-VLFYASWCPFSRNFRPSFSVLSSLYS--SIPHFAIEE--------------------------SAIRPSILSK 130 (316)
Q Consensus 80 ~~~~vl-V~Fya~WC~~Ck~~~p~~~~la~~~~--~~~~v~~~~--------------------------~~~~~~l~~~ 130 (316)
.+++++ +.|+++||+.|....+.|.+++++|. +...+++.- +|.+..+++.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 456555 48899999999999999999999885 333333321 1123467888
Q ss_pred cCCC-------ccceEEEE--eCceeEEEeC----CCCHHHHHHHHHHhh
Q 021221 131 YGVH-------GFPTLFLL--NSSMRVRYHG----SRTLDSLVAFYSDVT 167 (316)
Q Consensus 131 ~~I~-------~~Pti~l~--~g~~~~~~~G----~~~~~~l~~fi~~~~ 167 (316)
||+. ..|+++++ +|.....+.+ .++.+++...|+...
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 161 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQ 161 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 8873 47999999 5555554332 468899998887653
No 175
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.88 E-value=1.6e-06 Score=67.06 Aligned_cols=49 Identities=20% Similarity=0.176 Sum_probs=42.9
Q ss_pred cCCCccccccCCcccCChhhhhchHHHHHHHHHHH------------------HHHhHHhhhhhHhHhhccc
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYLALATAFV------------------LLRLVYIFLPTLLIFAQFT 239 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~------------------~~~~~i~~~Ptl~~~~~~~ 239 (316)
..+++.| ++ |||++|+++ .|.|..+|..+. +.+++|.++||+.+|.+|.
T Consensus 19 ~~~lv~f-~a--~wC~~C~~~--~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~ 85 (109)
T cd03002 19 YTTLVEF-YA--PWCGHCKNL--KPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPK 85 (109)
T ss_pred CeEEEEE-EC--CCCHHHHhh--ChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCC
Confidence 3477888 99 999999999 999999998863 3689999999999998886
No 176
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.88 E-value=0.00022 Score=60.21 Aligned_cols=100 Identities=17% Similarity=0.280 Sum_probs=78.5
Q ss_pred ceEEeCCcccHHHHHhHHhccCCCe-EEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCC--c
Q 021221 59 VGVIEGDEVSLQMALNMVHKNSHEY-VAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVH--G 135 (316)
Q Consensus 59 v~~l~~~~~~~~~~~~~i~~~~~~~-vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~--~ 135 (316)
+..++.++ +..+ .+.+.+ +++.|+.........+...++++++.+++...+...|++..+++.+.+|+. .
T Consensus 79 v~~~t~~n--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~ 151 (184)
T PF13848_consen 79 VPELTPEN--FEKL-----FSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDD 151 (184)
T ss_dssp CEEESTTH--HHHH-----HSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSS
T ss_pred ccccchhh--HHHH-----hcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCcc
Confidence 44555555 6666 234544 888888778889999999999999999998888888988889999999998 8
Q ss_pred cceEEEEe--Cce-eEEEeCCCCHHHHHHHHHH
Q 021221 136 FPTLFLLN--SSM-RVRYHGSRTLDSLVAFYSD 165 (316)
Q Consensus 136 ~Pti~l~~--g~~-~~~~~G~~~~~~l~~fi~~ 165 (316)
+|++++++ +.. ...+.|..+.++|.+|+++
T Consensus 152 ~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 152 LPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp SSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred CCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 99999994 222 2223788999999999974
No 177
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=97.88 E-value=0.0002 Score=65.66 Aligned_cols=106 Identities=16% Similarity=0.247 Sum_probs=70.3
Q ss_pred CCcceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHH------HHHHH-HHcCC-CcEEEEEeCCCChhh
Q 021221 56 QDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPS------FSVLS-SLYSS-IPHFAIEESAIRPSI 127 (316)
Q Consensus 56 ~~~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~------~~~la-~~~~~-~~~v~~~~~~~~~~l 127 (316)
...|..++.++ |.++ .++.+..+|+||.|-- .-+..... +-+|+ +.... -+.++.+|..++..+
T Consensus 33 kDRVi~LneKN--fk~~-----lKkyd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~kl 104 (383)
T PF01216_consen 33 KDRVIDLNEKN--FKRA-----LKKYDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKL 104 (383)
T ss_dssp S--CEEE-TTT--HHHH-----HHH-SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHH
T ss_pred ccceEEcchhH--HHHH-----HHhhcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHH
Confidence 34445555555 8887 3455788888998863 33332222 22343 33332 578888999999999
Q ss_pred HhhcCCCccceEEEEeCceeEEEeCCCCHHHHHHHHHHhhCC
Q 021221 128 LSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSDVTAS 169 (316)
Q Consensus 128 ~~~~~I~~~Pti~l~~g~~~~~~~G~~~~~~l~~fi~~~~~~ 169 (316)
++++|+...+++++|.+..++.|.|.++++.|++||...+..
T Consensus 105 AKKLgv~E~~SiyVfkd~~~IEydG~~saDtLVeFl~dl~ed 146 (383)
T PF01216_consen 105 AKKLGVEEEGSIYVFKDGEVIEYDGERSADTLVEFLLDLLED 146 (383)
T ss_dssp HHHHT--STTEEEEEETTEEEEE-S--SHHHHHHHHHHHHSS
T ss_pred HHhcCccccCcEEEEECCcEEEecCccCHHHHHHHHHHhccc
Confidence 999999999999999888889999999999999999999983
No 178
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.88 E-value=8.3e-05 Score=52.58 Aligned_cols=67 Identities=19% Similarity=0.362 Sum_probs=42.4
Q ss_pred EEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhH----hhcCCCccceEEEEeCceeEEEeCCCCHHHHH
Q 021221 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSIL----SKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLV 160 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~----~~~~I~~~Pti~l~~g~~~~~~~G~~~~~~l~ 160 (316)
++.|+++||++|+++.+.+++. ++. +...+.+.+.+.. +..++.++|++++ +| ....| .+.+.|.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~i~-~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~-~~---~~i~g-~~~~~l~ 70 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----GIP-FEEVDVDEDPEALEELKKLNGYRSVPVVVI-GD---EHLSG-FRPDKLR 70 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----CCC-eEEEeCCCCHHHHHHHHHHcCCcccCEEEE-CC---EEEec-CCHHHHH
Confidence 5789999999999999888763 222 2223333344333 3347899999975 44 23344 4566666
Q ss_pred HH
Q 021221 161 AF 162 (316)
Q Consensus 161 ~f 162 (316)
++
T Consensus 71 ~~ 72 (73)
T cd02976 71 AL 72 (73)
T ss_pred hh
Confidence 54
No 179
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.88 E-value=2.4e-06 Score=66.86 Aligned_cols=51 Identities=10% Similarity=0.075 Sum_probs=44.4
Q ss_pred ccCCCccccccCCcccCChhhhhchHHHHHHHHHHH-----------------HHHhHHhhhhhHhHhhccce
Q 021221 185 EKHNNTEEESCPFSWARSPENLLQQETYLALATAFV-----------------LLRLVYIFLPTLLIFAQFTW 240 (316)
Q Consensus 185 ~~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~-----------------~~~~~i~~~Ptl~~~~~~~~ 240 (316)
++.+++.| ++ |||++|+.+ .|.+.+++..+. +.+++|.++||+.+|.+|.-
T Consensus 24 ~~~vlV~F-~a--~wC~~C~~~--~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g~~ 91 (111)
T cd02963 24 KKPYLIKI-TS--DWCFSCIHI--EPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIINGQV 91 (111)
T ss_pred CCeEEEEE-EC--CccHhHHHh--hHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECCEE
Confidence 34578888 99 999999999 999999999873 27899999999999988864
No 180
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.87 E-value=0.00013 Score=63.20 Aligned_cols=98 Identities=17% Similarity=0.271 Sum_probs=67.7
Q ss_pred eCCcccHHHHHhHHhccCCCeEEEEEEc-CCChHHHhhhHHHHHHHHHcCC--CcEEEEEe-------------------
Q 021221 63 EGDEVSLQMALNMVHKNSHEYVAVLFYA-SWCPFSRNFRPSFSVLSSLYSS--IPHFAIEE------------------- 120 (316)
Q Consensus 63 ~~~~~~~~~~~~~i~~~~~~~vlV~Fya-~WC~~Ck~~~p~~~~la~~~~~--~~~v~~~~------------------- 120 (316)
++.++++.+. .+++++|.||+ .||+.|....+.+.++.++|.+ ...+++.-
T Consensus 25 ~~~~v~l~d~-------~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~ 97 (199)
T PTZ00253 25 SFKKISLSSY-------KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGL 97 (199)
T ss_pred CCcEEeHHHH-------CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCc
Confidence 3456777777 57899999995 8899999999999999998873 33443321
Q ss_pred --------CCCChhhHhhcCCC------ccceEEEE--eCceeEEEeC----CCCHHHHHHHHHHhh
Q 021221 121 --------SAIRPSILSKYGVH------GFPTLFLL--NSSMRVRYHG----SRTLDSLVAFYSDVT 167 (316)
Q Consensus 121 --------~~~~~~l~~~~~I~------~~Pti~l~--~g~~~~~~~G----~~~~~~l~~fi~~~~ 167 (316)
+|...++++.||+. .+|+.+++ +|+.+..+.+ .++.+++.+.|+..-
T Consensus 98 ~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~ 164 (199)
T PTZ00253 98 GTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQ 164 (199)
T ss_pred cccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhh
Confidence 11234678889985 47899999 4555554443 356677777776543
No 181
>PRK13189 peroxiredoxin; Provisional
Probab=97.84 E-value=0.00019 Score=63.23 Aligned_cols=88 Identities=14% Similarity=0.227 Sum_probs=61.0
Q ss_pred CCCe-EEEEEEcCCChHHHhhhHHHHHHHHHcC--CCcEEEEE--e------------------------CCCChhhHhh
Q 021221 80 SHEY-VAVLFYASWCPFSRNFRPSFSVLSSLYS--SIPHFAIE--E------------------------SAIRPSILSK 130 (316)
Q Consensus 80 ~~~~-vlV~Fya~WC~~Ck~~~p~~~~la~~~~--~~~~v~~~--~------------------------~~~~~~l~~~ 130 (316)
.+++ +|+.|+++||+.|....+.|.+++++|. +...+++. + +|....+++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 4564 4557789999999999999999998885 33333331 0 1223467888
Q ss_pred cCCC-------ccceEEEE--eCceeEEEe----CCCCHHHHHHHHHHhh
Q 021221 131 YGVH-------GFPTLFLL--NSSMRVRYH----GSRTLDSLVAFYSDVT 167 (316)
Q Consensus 131 ~~I~-------~~Pti~l~--~g~~~~~~~----G~~~~~~l~~fi~~~~ 167 (316)
||+. .+|+++++ +|.....+. ..++.+++...|+...
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 163 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ 163 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 9975 57899999 555544433 4567888988887653
No 182
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.84 E-value=0.00011 Score=54.80 Aligned_cols=78 Identities=15% Similarity=0.231 Sum_probs=53.8
Q ss_pred EEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCC---CChhhHhhcC--CCccceEEEEeCceeEEEeCCCCHHHH
Q 021221 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESA---IRPSILSKYG--VHGFPTLFLLNSSMRVRYHGSRTLDSL 159 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~---~~~~l~~~~~--I~~~Pti~l~~g~~~~~~~G~~~~~~l 159 (316)
++.|..+|||+|++....++++...++++....++... ...++.+.+| +.++|+++ ++|+. .| ..++|
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if-i~g~~----ig--G~~dl 74 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF-VDEKH----VG--GCTDF 74 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE-ECCEE----ec--CHHHH
Confidence 67899999999999999999987665554433332211 1234666666 37999995 36643 33 35788
Q ss_pred HHHHHHhhCC
Q 021221 160 VAFYSDVTAS 169 (316)
Q Consensus 160 ~~fi~~~~~~ 169 (316)
.++++++.++
T Consensus 75 ~~~~~~~~~~ 84 (86)
T TIGR02183 75 EQLVKENFDI 84 (86)
T ss_pred HHHHHhcccc
Confidence 9998887764
No 183
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=97.82 E-value=1.7e-06 Score=66.64 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=44.9
Q ss_pred cCCCccccccCCcccCChhhhhchHHHHHHHHHHH----------------HHHhHHhhhhhHhHhhccceehhh
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFLPTLLIFAQFTWRRLI 244 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~----------------~~~~~i~~~Ptl~~~~~~~~~~~~ 244 (316)
+.+++.| ++ |||++|+.+ .|.+..++..+. ..+++|.++||+.+|.+|.-+..+
T Consensus 18 ~~vvv~F-~a--~wC~~Ck~~--~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 87 (102)
T cd02948 18 GLTVVDV-YQ--EWCGPCKAV--VSLFKKIKNELGDDLLHFATAEADTIDTLKRYRGKCEPTFLFYKNGELVAVI 87 (102)
T ss_pred CeEEEEE-EC--CcCHhHHHH--hHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHcCCCcCcEEEEEECCEEEEEE
Confidence 3467888 99 999999999 999999988773 279999999999999988754333
No 184
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.82 E-value=3.6e-06 Score=64.89 Aligned_cols=51 Identities=10% Similarity=0.047 Sum_probs=43.3
Q ss_pred ccCCCccccccCCcccCChhhhhchHHHHHHHHHHH-------------------HHHhHHhhhhhHhHhhccce
Q 021221 185 EKHNNTEEESCPFSWARSPENLLQQETYLALATAFV-------------------LLRLVYIFLPTLLIFAQFTW 240 (316)
Q Consensus 185 ~~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~-------------------~~~~~i~~~Ptl~~~~~~~~ 240 (316)
+..+++.| ++ |||++|+.+ .|.+..++..|. +.+++|.++||+.+|.+|..
T Consensus 15 ~~~vlv~f-~a--~wC~~C~~~--~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~ 84 (104)
T cd03000 15 EDIWLVDF-YA--PWCGHCKKL--EPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLA 84 (104)
T ss_pred CCeEEEEE-EC--CCCHHHHhh--ChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCCc
Confidence 34578888 99 999999999 999999999872 27899999999999976643
No 185
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=97.81 E-value=2.8e-06 Score=64.70 Aligned_cols=52 Identities=13% Similarity=0.118 Sum_probs=46.1
Q ss_pred ccCCCccccccCCcccCChhhhhchHHHHHHHHHHH----------------HHHhHHhhhhhHhHhhcccee
Q 021221 185 EKHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFLPTLLIFAQFTWR 241 (316)
Q Consensus 185 ~~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~----------------~~~~~i~~~Ptl~~~~~~~~~ 241 (316)
+..+++.| ++ |||++|+.+ .|.|..++..+. +.+++|.++||+.+|.+|.-.
T Consensus 17 ~~~vvv~f-~~--~~C~~C~~~--~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~ 84 (103)
T PF00085_consen 17 DKPVVVYF-YA--PWCPPCKAF--KPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEV 84 (103)
T ss_dssp SSEEEEEE-ES--TTSHHHHHH--HHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEE
T ss_pred CCCEEEEE-eC--CCCCccccc--cceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCcEE
Confidence 34578888 99 999999999 999999999874 499999999999999998854
No 186
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=97.78 E-value=4.2e-06 Score=66.37 Aligned_cols=56 Identities=11% Similarity=-0.069 Sum_probs=42.1
Q ss_pred CCccccccCCcccCC--hhhhhchHHHHHHHHHHH------------------HHHhHHhhhhhHhHhhccceehhhh
Q 021221 188 NNTEEESCPFSWARS--PENLLQQETYLALATAFV------------------LLRLVYIFLPTLLIFAQFTWRRLIR 245 (316)
Q Consensus 188 ~~v~f~~~~~pw~~~--~~~~l~~~~~~~lA~~f~------------------~~~~~i~~~Ptl~~~~~~~~~~~~~ 245 (316)
.++.|+.+ +||++ |+++.-.|..+++|..++ +.+|+|.++||+++|.+|..+.+.+
T Consensus 29 ~vvv~f~a--~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iPTl~lfk~G~~v~~~G 104 (120)
T cd03065 29 LCLLYHEP--VESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEEDSIYVFKDDEVIEYDG 104 (120)
T ss_pred eEEEEECC--CcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccccEEEEEECCEEEEeeC
Confidence 44444266 78864 994433899999998883 3999999999999999998655443
No 187
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=0.00023 Score=55.36 Aligned_cols=74 Identities=22% Similarity=0.304 Sum_probs=51.9
Q ss_pred HHHHHhHHhccCCCeEEEEEEc--------CCChHHHhhhHHHHHHHHHcCCCcEEEEEeCC-------CChhhHhhcCC
Q 021221 69 LQMALNMVHKNSHEYVAVLFYA--------SWCPFSRNFRPSFSVLSSLYSSIPHFAIEESA-------IRPSILSKYGV 133 (316)
Q Consensus 69 ~~~~~~~i~~~~~~~vlV~Fya--------~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~-------~~~~l~~~~~I 133 (316)
|++.+..+ .+++.++|+|++ +|||.|.+..|.+.+.-+..+...++..++.. -+..+....++
T Consensus 15 ~~~~~~~~--~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~ 92 (128)
T KOG3425|consen 15 FEETLKNV--ENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGI 92 (128)
T ss_pred HHHHHHHH--hCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCc
Confidence 55554433 345569999996 69999999999999998877764444333321 23456666777
Q ss_pred -CccceEEEEeC
Q 021221 134 -HGFPTLFLLNS 144 (316)
Q Consensus 134 -~~~Pti~l~~g 144 (316)
.++||++=+++
T Consensus 93 lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 93 LTAVPTLLRWKR 104 (128)
T ss_pred eeecceeeEEcC
Confidence 89999998843
No 188
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.74 E-value=7.7e-06 Score=61.80 Aligned_cols=50 Identities=16% Similarity=0.053 Sum_probs=43.7
Q ss_pred cCCCccccccCCcccCChhhhhchHHHHHHHHHHH----------------HHHhHHhhhhhHhHhhccce
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFLPTLLIFAQFTW 240 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~----------------~~~~~i~~~Ptl~~~~~~~~ 240 (316)
..+++.| ++ |||++|+.+ .|.+..++..|. +.+++|.++||+.+|.+|..
T Consensus 13 ~~vlv~f-~a--~wC~~C~~~--~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 13 VPVVVDF-WA--PRSPPSKEL--LPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred CeEEEEE-EC--CCChHHHHH--HHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 4577888 99 999999999 999999998873 37999999999999988863
No 189
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.73 E-value=6.8e-06 Score=62.76 Aligned_cols=48 Identities=19% Similarity=0.135 Sum_probs=42.2
Q ss_pred CCCccccccCCcccCChhhhhchHHHHHHHHHHH----------------HHHhHHhhhhhHhHhhccc
Q 021221 187 HNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFLPTLLIFAQFT 239 (316)
Q Consensus 187 ~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~----------------~~~~~i~~~Ptl~~~~~~~ 239 (316)
.+++.| ++ |||++|+++ .|.|..+|..+. +.+++|.++|++.+|.+|.
T Consensus 20 ~vlv~f-~a--~~C~~C~~~--~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~ 83 (103)
T cd03001 20 VWLVEF-YA--PWCGHCKNL--APEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAGK 83 (103)
T ss_pred cEEEEE-EC--CCCHHHHHH--hHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCCC
Confidence 367778 99 999999999 999999998873 3899999999999999883
No 190
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.73 E-value=7.3e-06 Score=64.49 Aligned_cols=49 Identities=22% Similarity=0.203 Sum_probs=42.8
Q ss_pred cCCCccccccCCcccCChhhhhchHHHHHHHHHHH---------------------HHHhHHhhhhhHhHhhccc
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYLALATAFV---------------------LLRLVYIFLPTLLIFAQFT 239 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~---------------------~~~~~i~~~Ptl~~~~~~~ 239 (316)
..+++.| ++ |||++|+.+ .|.|..+|..|. +.+++|.+|||+++|.+|.
T Consensus 20 ~~vvV~f-~a--~wC~~C~~~--~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf~~~~ 89 (114)
T cd02992 20 SAWLVEF-YA--SWCGHCRAF--APTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRYFPPFS 89 (114)
T ss_pred CeEEEEE-EC--CCCHHHHHH--hHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEEECCCC
Confidence 4578888 99 999999999 999999998763 2578999999999999987
No 191
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.71 E-value=0.00053 Score=56.65 Aligned_cols=82 Identities=20% Similarity=0.417 Sum_probs=61.2
Q ss_pred CCCeEEEEEEcCCChHHHhhhHHHHHHHHHc--CCCcEEEEEeCCCC---------------------------------
Q 021221 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLY--SSIPHFAIEESAIR--------------------------------- 124 (316)
Q Consensus 80 ~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~--~~~~~v~~~~~~~~--------------------------------- 124 (316)
+.+++|+.|+..-||+|+++.+.+.++.+.+ ++.+.+........
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 4588999999999999999999999999988 55444433322100
Q ss_pred -----------------------------------hhhHhhcCCCccceEEEEeCceeEEEeCCCCHHHHHHHHHH
Q 021221 125 -----------------------------------PSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSD 165 (316)
Q Consensus 125 -----------------------------------~~l~~~~~I~~~Pti~l~~g~~~~~~~G~~~~~~l~~fi~~ 165 (316)
...+.++||+++||+++ ||+. +.|..+.++|.+.|++
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i-nG~~---~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI-NGKY---VVGPYTIEELKELIDK 162 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE-TTCE---EETTTSHHHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE-CCEE---eCCCCCHHHHHHHHcC
Confidence 03456779999999998 8866 4888999999999875
No 192
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.68 E-value=0.00011 Score=62.03 Aligned_cols=73 Identities=16% Similarity=0.198 Sum_probs=64.9
Q ss_pred CCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEE-eCceeEEEeCC
Q 021221 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGS 153 (316)
Q Consensus 80 ~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g~~~~~~~G~ 153 (316)
...-|++.||-|.-..|+-|...++.||..+-+..++.+ +.+..|-++.+++|+.+|++.+| ||..+.++.|.
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikv-nae~~PFlv~kL~IkVLP~v~l~k~g~~~D~iVGF 156 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKV-NAEKAPFLVTKLNIKVLPTVALFKNGKTVDYVVGF 156 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEE-ecccCceeeeeeeeeEeeeEEEEEcCEEEEEEeeH
Confidence 556799999999999999999999999999998777766 45567889999999999999999 89988888874
No 193
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=97.64 E-value=1.5e-05 Score=62.51 Aligned_cols=53 Identities=19% Similarity=0.042 Sum_probs=45.2
Q ss_pred CCCccccccCCcccCChhhhhchHHHHHHHHHHH--------------HHHhHHhhhhhHhHhhccceehhh
Q 021221 187 HNNTEEESCPFSWARSPENLLQQETYLALATAFV--------------LLRLVYIFLPTLLIFAQFTWRRLI 244 (316)
Q Consensus 187 ~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~--------------~~~~~i~~~Ptl~~~~~~~~~~~~ 244 (316)
.+++.| ++ |||++|+.+ .|.++.+|..|- ..+++|.++||+.+|.+|..+...
T Consensus 26 ~vvv~F-~a--~~c~~C~~l--~~~l~~la~~~~~v~f~~vd~~~~~l~~~~~i~~~Pt~~~f~~G~~v~~~ 92 (113)
T cd02957 26 RVVVHF-YE--PGFPRCKIL--DSHLEELAAKYPETKFVKINAEKAFLVNYLDIKVLPTLLVYKNGELIDNI 92 (113)
T ss_pred EEEEEE-eC--CCCCcHHHH--HHHHHHHHHHCCCcEEEEEEchhhHHHHhcCCCcCCEEEEEECCEEEEEE
Confidence 467788 99 999999999 999999998862 368999999999999999865433
No 194
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.62 E-value=1.2e-05 Score=66.45 Aligned_cols=58 Identities=14% Similarity=0.092 Sum_probs=47.6
Q ss_pred CCCccccccCCcccCChhhhhchHHHHHHHHHHH-----------------HHHhHHhh------hhhHhHhhccceehh
Q 021221 187 HNNTEEESCPFSWARSPENLLQQETYLALATAFV-----------------LLRLVYIF------LPTLLIFAQFTWRRL 243 (316)
Q Consensus 187 ~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~-----------------~~~~~i~~------~Ptl~~~~~~~~~~~ 243 (316)
.+++.| ++ |||++|+.+ .|.++.+|..+. +.+++|.+ +||+.+|.+|.-+..
T Consensus 49 ~vvV~F-ya--~wC~~Ck~l--~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r 123 (152)
T cd02962 49 TWLVEF-FT--TWSPECVNF--APVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVAR 123 (152)
T ss_pred EEEEEE-EC--CCCHHHHHH--HHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEEE
Confidence 468888 99 999999999 999999998863 37889988 999999999986554
Q ss_pred hhcccc
Q 021221 244 IRNLKL 249 (316)
Q Consensus 244 ~~~~~~ 249 (316)
....+.
T Consensus 124 ~~G~~~ 129 (152)
T cd02962 124 RPYYND 129 (152)
T ss_pred Eecccc
Confidence 444443
No 195
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.62 E-value=0.0003 Score=60.71 Aligned_cols=80 Identities=21% Similarity=0.360 Sum_probs=54.0
Q ss_pred CCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEE--EE---------------------------------------
Q 021221 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHF--AI--------------------------------------- 118 (316)
Q Consensus 80 ~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v--~~--------------------------------------- 118 (316)
+.+..++.|..+.||+|+++.+.+.+....+. +..+ .+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~-v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~ 154 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKPNADGVT-VRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASC 154 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhccCceE-EEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcccc
Confidence 46899999999999999999999886111100 0000 00
Q ss_pred -EeCCCChhhHhhcCCCccceEEEEeCceeEEEeCCCCHHHHHHHH
Q 021221 119 -EESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFY 163 (316)
Q Consensus 119 -~~~~~~~~l~~~~~I~~~Pti~l~~g~~~~~~~G~~~~~~l~~fi 163 (316)
.+.+.+..+++++||+++||+++-+|+. +.|..+.++|.++|
T Consensus 155 ~~~i~~~~~l~~~~gi~gtPtii~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 155 DNPVAANLALGRQLGVNGTPTIVLADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred CchHHHHHHHHHHcCCCcccEEEECCCeE---ecCCCCHHHHHhhC
Confidence 0111234788999999999998336654 57888888887764
No 196
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.61 E-value=0.00012 Score=53.50 Aligned_cols=58 Identities=16% Similarity=0.363 Sum_probs=40.9
Q ss_pred EEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCC----hhhHhhcCCCccceEEEEeCce
Q 021221 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIR----PSILSKYGVHGFPTLFLLNSSM 146 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~----~~l~~~~~I~~~Pti~l~~g~~ 146 (316)
++.|+++|||+|+++.+.++++...| ..+.++..+.. ..+.+..|+.++|+++ ++|+.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~-~~g~~ 63 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVKP---AVVELDQHEDGSEIQDYLQELTGQRTVPNVF-IGGKF 63 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCCc---EEEEEeCCCChHHHHHHHHHHhCCCCCCeEE-ECCEE
Confidence 57899999999999999999986643 34444322221 2455667999999973 36644
No 197
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.57 E-value=0.00059 Score=67.68 Aligned_cols=85 Identities=15% Similarity=0.267 Sum_probs=70.6
Q ss_pred CCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEEeCceeEEEeCCCCHHHH
Q 021221 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSL 159 (316)
Q Consensus 80 ~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~~g~~~~~~~G~~~~~~l 159 (316)
++..-+-.|+++.||+|......+++++...+++. ...+|....++++++|+|.++|++++ |++ ..+.|..+.+++
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~-~~~id~~~~~~~~~~~~v~~VP~~~i-~~~--~~~~g~~~~~~~ 191 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLNPNIS-HTMIDGALFQDEVEALGIQGVPAVFL-NGE--EFHNGRMDLAEL 191 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCce-EEEEEchhCHHHHHhcCCcccCEEEE-CCc--EEEecCCCHHHH
Confidence 34456889999999999999999999999988654 55567788999999999999999976 665 347798999999
Q ss_pred HHHHHHhhC
Q 021221 160 VAFYSDVTA 168 (316)
Q Consensus 160 ~~fi~~~~~ 168 (316)
.+.+.+..+
T Consensus 192 ~~~l~~~~~ 200 (515)
T TIGR03140 192 LEKLEETAG 200 (515)
T ss_pred HHHHhhccC
Confidence 888876643
No 198
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.57 E-value=0.00011 Score=53.70 Aligned_cols=73 Identities=19% Similarity=0.356 Sum_probs=46.2
Q ss_pred CCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEEeCceeEEEeCCCCHHHHH
Q 021221 81 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLV 160 (316)
Q Consensus 81 ~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~~g~~~~~~~G~~~~~~l~ 160 (316)
++.-++.|..+||++|++.+..+++..-.| ..+.++..+....+....|..++|++++ +|+. .|. .++|.
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y---~~idi~~~~~~~~~~~~~g~~~vP~i~i-~g~~----igG--~~~l~ 75 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKGYDF---EEIPLGNDARGRSLRAVTGATTVPQVFI-GGKL----IGG--SDELE 75 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcCCCc---EEEECCCChHHHHHHHHHCCCCcCeEEE-CCEE----EcC--HHHHH
Confidence 344588999999999999999997542222 2223322222245666679999999964 6653 222 35666
Q ss_pred HHH
Q 021221 161 AFY 163 (316)
Q Consensus 161 ~fi 163 (316)
+|+
T Consensus 76 ~~l 78 (79)
T TIGR02190 76 AYL 78 (79)
T ss_pred HHh
Confidence 654
No 199
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=97.56 E-value=1.6e-05 Score=62.46 Aligned_cols=51 Identities=14% Similarity=0.027 Sum_probs=44.6
Q ss_pred cCCCccccccCCcccCChhhhhchHHHHHHHHHH---------------HHHHhHHhhhhhHhHhhcccee
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYLALATAF---------------VLLRLVYIFLPTLLIFAQFTWR 241 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f---------------~~~~~~i~~~Ptl~~~~~~~~~ 241 (316)
..+++.| ++ |||++|+.+ .|.++.++..| +..+++|...||+.+|.+|.-+
T Consensus 23 ~~vvV~f-~a--~~c~~C~~~--~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~~v 88 (113)
T cd02989 23 ERVVCHF-YH--PEFFRCKIM--DKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVILFKNGKTV 88 (113)
T ss_pred CcEEEEE-EC--CCCccHHHH--HHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEEEEECCEEE
Confidence 3477888 99 999999999 99999999876 2388999999999999999754
No 200
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=97.54 E-value=0.0029 Score=50.32 Aligned_cols=95 Identities=9% Similarity=0.179 Sum_probs=72.5
Q ss_pred HHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEE-EE-eCce
Q 021221 69 LQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLF-LL-NSSM 146 (316)
Q Consensus 69 ~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~-l~-~g~~ 146 (316)
.+++ +..+.++.++|.|.-+|-+.|.+|...+.+++....+...+...|.++-+++.+.|.+. -|..+ +| +++.
T Consensus 11 VDqA---I~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnkh 86 (133)
T PF02966_consen 11 VDQA---ILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNKH 86 (133)
T ss_dssp HHHH---HHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTEE
T ss_pred HHHH---HhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecCeE
Confidence 5555 66678999999999999999999999999999999999999999999999999999999 77654 44 6654
Q ss_pred e-EEEe--------CC-CCHHHHHHHHHHhh
Q 021221 147 R-VRYH--------GS-RTLDSLVAFYSDVT 167 (316)
Q Consensus 147 ~-~~~~--------G~-~~~~~l~~fi~~~~ 167 (316)
+ ..+. +. .+.+++++.++...
T Consensus 87 m~vD~GtgnnnKin~~~~~kqe~iDiie~iy 117 (133)
T PF02966_consen 87 MMVDFGTGNNNKINWAFEDKQEFIDIIETIY 117 (133)
T ss_dssp EEEESSSSSSSSBCS--SCHHHHHHHHHHHH
T ss_pred EEEEecCCCccEEEEEcCcHHHHHHHHHHHH
Confidence 3 3332 22 35677777776543
No 201
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.52 E-value=4e-05 Score=59.76 Aligned_cols=75 Identities=17% Similarity=0.012 Sum_probs=55.9
Q ss_pred HHHHHHHhhCCC--CCCCcccccccCccccCCCccccccCCcc--cCChhhhhchHHHHHHHHHHH--------------
Q 021221 159 LVAFYSDVTASL--DKISPDKVGKASNHEKHNNTEEESCPFSW--ARSPENLLQQETYLALATAFV-------------- 220 (316)
Q Consensus 159 l~~fi~~~~~~~--~~~~~~~~~~~~~~~~~~~v~f~~~~~pw--~~~~~~~l~~~~~~~lA~~f~-------------- 220 (316)
+++++.+..+.. +..++++.+ ..+....+.| ++ +| |.+|..+ .|.++++|..|-
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~f-~~--~~~~cp~c~~i--~P~leela~e~~~~v~f~kVdid~~~ 73 (111)
T cd02965 2 LVARLQTRHGWPRVDAATLDDWL---AAGGDLVLLL-AG--DPVRFPEVLDV--AVVLPELLKAFPGRFRAAVVGRADEQ 73 (111)
T ss_pred HhHHHHHhcCCcccccccHHHHH---hCCCCEEEEe-cC--CcccCcchhhh--HhHHHHHHHHCCCcEEEEEEECCCCH
Confidence 456666666532 345666555 2234455666 88 76 9999999 999999999872
Q ss_pred --HHHhHHhhhhhHhHhhcccee
Q 021221 221 --LLRLVYIFLPTLLIFAQFTWR 241 (316)
Q Consensus 221 --~~~~~i~~~Ptl~~~~~~~~~ 241 (316)
..+|+|.+.||+.+|.+|..+
T Consensus 74 ~la~~f~V~sIPTli~fkdGk~v 96 (111)
T cd02965 74 ALAARFGVLRTPALLFFRDGRYV 96 (111)
T ss_pred HHHHHcCCCcCCEEEEEECCEEE
Confidence 489999999999999999743
No 202
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.51 E-value=1.7e-05 Score=60.56 Aligned_cols=49 Identities=24% Similarity=0.242 Sum_probs=42.1
Q ss_pred cCCCccccccCCcccCChhhhhchHHHHHHHHHHH-----------------HHHhHHhhhhhHhHhhccc
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYLALATAFV-----------------LLRLVYIFLPTLLIFAQFT 239 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~-----------------~~~~~i~~~Ptl~~~~~~~ 239 (316)
..+++.| ++ |||++|+.+ .|.|..++..+. +..+++.++||+.+|.+|.
T Consensus 19 ~~~~v~f-~~--~~C~~C~~~--~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~~~~~~~~ 84 (104)
T cd02995 19 KDVLVEF-YA--PWCGHCKAL--APIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTILFFPAGD 84 (104)
T ss_pred CcEEEEE-EC--CCCHHHHHH--hhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEEEEEcCCC
Confidence 4577888 99 999999999 999999998762 2677889999999999886
No 203
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.47 E-value=1.7e-05 Score=60.34 Aligned_cols=47 Identities=23% Similarity=0.249 Sum_probs=41.7
Q ss_pred CCccccccCCcccCChhhhhchHHHHHHHHHHH-------------------HHHhHHhhhhhHhHhhccc
Q 021221 188 NNTEEESCPFSWARSPENLLQQETYLALATAFV-------------------LLRLVYIFLPTLLIFAQFT 239 (316)
Q Consensus 188 ~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~-------------------~~~~~i~~~Ptl~~~~~~~ 239 (316)
+++.| ++ |||++|+.+ .|.+..+|..+. +.+++|.++||+.+|.+|.
T Consensus 19 ~lv~f-~a--~wC~~C~~~--~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 84 (102)
T cd03005 19 HFVKF-FA--PWCGHCKRL--APTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKDGE 84 (102)
T ss_pred EEEEE-EC--CCCHHHHHh--CHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeCCC
Confidence 77788 99 999999999 999999998873 2789999999999998876
No 204
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.45 E-value=2e-05 Score=76.36 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=44.5
Q ss_pred cCCCccccccCCcccCChhhhhchHHHHHHHHHH---------------------HHHHhHHhhhhhHhHhhccc
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYLALATAF---------------------VLLRLVYIFLPTLLIFAQFT 239 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f---------------------~~~~~~i~~~Ptl~~~~~~~ 239 (316)
+..+|+| |+ .|||||.++ +|+|..+|... +|..++|.+||+|++|+.+.
T Consensus 58 ~~~lVEF-y~--swCGhCr~F--APtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~~~~ 127 (606)
T KOG1731|consen 58 KAKLVEF-YN--SWCGHCRAF--APTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYFPPDS 127 (606)
T ss_pred hhHHHHH-HH--hhhhhhhhc--chHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeecCCcc
Confidence 3578999 99 999999999 99999999886 46999999999999999886
No 205
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.42 E-value=8.3e-05 Score=51.18 Aligned_cols=54 Identities=13% Similarity=0.320 Sum_probs=38.0
Q ss_pred EEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCC----hhhHhhcCCCccceEEEEeCc
Q 021221 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIR----PSILSKYGVHGFPTLFLLNSS 145 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~----~~l~~~~~I~~~Pti~l~~g~ 145 (316)
++.|..+||++|++....|++.. ..+...|.+.+ .++.+..|..++|++++ +|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~------i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i-~g~ 58 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKG------IPYEEVDVDEDEEAREELKELSGVRTVPQVFI-DGK 58 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTT------BEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE-TTE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcC------CeeeEcccccchhHHHHHHHHcCCCccCEEEE-CCE
Confidence 57899999999999999886543 23344444433 34455559999999986 554
No 206
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.42 E-value=0.0012 Score=49.86 Aligned_cols=81 Identities=21% Similarity=0.244 Sum_probs=63.8
Q ss_pred ccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEE-e-CceeEEEeCCCC
Q 021221 78 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-N-SSMRVRYHGSRT 155 (316)
Q Consensus 78 ~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~-g~~~~~~~G~~~ 155 (316)
...+++++|-|+.++|+ .....|.++|+.+.+...++... +.++.+++++.. |++++| . ......|.|..+
T Consensus 14 ~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~~~~~~~y~g~~~ 86 (97)
T cd02981 14 LDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLFKPFEEEPVEYDGEFT 86 (97)
T ss_pred hccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEeCCcccCCccCCCCCC
Confidence 35778999999999988 56778999999997655555543 467888888764 999999 3 356677999999
Q ss_pred HHHHHHHHHH
Q 021221 156 LDSLVAFYSD 165 (316)
Q Consensus 156 ~~~l~~fi~~ 165 (316)
.++|.+||..
T Consensus 87 ~~~l~~fi~~ 96 (97)
T cd02981 87 EESLVEFIKD 96 (97)
T ss_pred HHHHHHHHHh
Confidence 9999999975
No 207
>PRK10996 thioredoxin 2; Provisional
Probab=97.42 E-value=4.5e-05 Score=62.19 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=43.3
Q ss_pred cCCCccccccCCcccCChhhhhchHHHHHHHHHHH----------------HHHhHHhhhhhHhHhhcccee
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFLPTLLIFAQFTWR 241 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~----------------~~~~~i~~~Ptl~~~~~~~~~ 241 (316)
+.+++.| ++ +||++|+.+ .|.+..++..+. ..+++|.++||+.+|.+|..+
T Consensus 53 k~vvv~F-~a--~wC~~C~~~--~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 53 LPVVIDF-WA--PWCGPCRNF--APIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred CeEEEEE-EC--CCCHHHHHH--HHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEEE
Confidence 3367778 99 999999999 999999998763 389999999999999888743
No 208
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.41 E-value=0.0016 Score=50.96 Aligned_cols=88 Identities=10% Similarity=0.027 Sum_probs=67.6
Q ss_pred cCCCeEEEEEEcCCChHHHhhhHHHHHHHHH---cCCCcEEEEEeCCCChhhHhhcCCCc--cceEEEEeCce--eEE-E
Q 021221 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSL---YSSIPHFAIEESAIRPSILSKYGVHG--FPTLFLLNSSM--RVR-Y 150 (316)
Q Consensus 79 ~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~---~~~~~~v~~~~~~~~~~l~~~~~I~~--~Pti~l~~g~~--~~~-~ 150 (316)
+.+.+..+.|+ .=..-....+.+.++++. |++...+...|.+......+.+|++. +|.+.+.+... ... +
T Consensus 14 ~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~ 91 (111)
T cd03072 14 EEGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAIDSFRHMYLFPDF 91 (111)
T ss_pred cCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEcchhcCcCCCC
Confidence 45566666677 223346788999999999 99987788778777777999999997 99999993232 333 4
Q ss_pred eCCCCHHHHHHHHHHhhC
Q 021221 151 HGSRTLDSLVAFYSDVTA 168 (316)
Q Consensus 151 ~G~~~~~~l~~fi~~~~~ 168 (316)
.+..+.++|.+|+++...
T Consensus 92 ~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 92 EDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred ccccCHHHHHHHHHHHhc
Confidence 578899999999998765
No 209
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=2.5e-05 Score=70.30 Aligned_cols=70 Identities=14% Similarity=0.060 Sum_probs=54.5
Q ss_pred CcccccccCccccCCCccccccCCcccCChhhhhchHHHHHHHHHHHH----------------HHhHHhhhhhHhHhhc
Q 021221 174 SPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFVL----------------LRLVYIFLPTLLIFAQ 237 (316)
Q Consensus 174 ~~~~~~~~~~~~~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~~----------------~~~~i~~~Ptl~~~~~ 237 (316)
+++..+.....+..++|.| ++ |||++|+.+ .|..+.++..|.+ .+++|.+.||+..|..
T Consensus 32 nfe~~V~~~S~~~PVlV~f-Wa--p~~~~c~qL--~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af~d 106 (304)
T COG3118 32 NFEQEVIQSSREVPVLVDF-WA--PWCGPCKQL--TPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKD 106 (304)
T ss_pred HHHHHHHHHccCCCeEEEe-cC--CCCchHHHH--HHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEeeC
Confidence 4444444444455689999 99 999999999 9999999999853 9999999999999999
Q ss_pred cceehhhhccc
Q 021221 238 FTWRRLIRNLK 248 (316)
Q Consensus 238 ~~~~~~~~~~~ 248 (316)
|.=+--.+-.+
T Consensus 107 GqpVdgF~G~q 117 (304)
T COG3118 107 GQPVDGFQGAQ 117 (304)
T ss_pred CcCccccCCCC
Confidence 86443333333
No 210
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=3.3e-05 Score=59.91 Aligned_cols=48 Identities=10% Similarity=0.161 Sum_probs=42.8
Q ss_pred CCccccccCCcccCChhhhhchHHHHHHHHHHH---------------HHHhHHhhhhhHhHhhccce
Q 021221 188 NNTEEESCPFSWARSPENLLQQETYLALATAFV---------------LLRLVYIFLPTLLIFAQFTW 240 (316)
Q Consensus 188 ~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~---------------~~~~~i~~~Ptl~~~~~~~~ 240 (316)
..++| ++ +|||+|+.+ .|.+..||..|- +..++|..-||+.++.+|.-
T Consensus 24 iVvdF-~a--~wCgPCk~i--~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~ 86 (106)
T KOG0907|consen 24 VVVDF-YA--TWCGPCKAI--APKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEE 86 (106)
T ss_pred EEEEE-EC--CCCcchhhh--hhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECCEE
Confidence 45778 99 999999999 999999999884 58999999999999988873
No 211
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.38 E-value=2.9e-05 Score=58.87 Aligned_cols=50 Identities=24% Similarity=0.252 Sum_probs=42.8
Q ss_pred ccCCCccccccCCcccCChhhhhchHHHHHHHHHHH------------------HHHhHHhhhhhHhHhhccc
Q 021221 185 EKHNNTEEESCPFSWARSPENLLQQETYLALATAFV------------------LLRLVYIFLPTLLIFAQFT 239 (316)
Q Consensus 185 ~~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~------------------~~~~~i~~~Ptl~~~~~~~ 239 (316)
...+++.| ++ +||.+|+.+ .+.+..+|..|. +.+++|.++|++.+|.+|.
T Consensus 13 ~~~~~i~f-~~--~~C~~c~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~ 80 (102)
T TIGR01126 13 NKDVLVEF-YA--PWCGHCKNL--APEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK 80 (102)
T ss_pred CCcEEEEE-EC--CCCHHHHhh--ChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC
Confidence 33467788 99 999999999 899999998864 3789999999999998887
No 212
>PHA03050 glutaredoxin; Provisional
Probab=97.37 E-value=0.00026 Score=55.10 Aligned_cols=62 Identities=19% Similarity=0.227 Sum_probs=43.0
Q ss_pred EEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCC----hhhHhhcCCCccceEEEEeCcee
Q 021221 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIR----PSILSKYGVHGFPTLFLLNSSMR 147 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~----~~l~~~~~I~~~Pti~l~~g~~~ 147 (316)
++.|..+|||+|++....|++..-.++....+.+++.+.. ..+.+..|.+++|++++ +|+.+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI-~g~~i 80 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF-GKTSI 80 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE-CCEEE
Confidence 7889999999999999999887544434444555432222 34666678899999944 66543
No 213
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.36 E-value=0.0011 Score=53.36 Aligned_cols=74 Identities=11% Similarity=0.238 Sum_probs=61.0
Q ss_pred HhhhHHHHHHHHHcCCC-cEEEEEeCCCChhhHhhcCCCc--cceEEEEeCce-eEE-EeCCCCHHHHHHHHHHhhCCC
Q 021221 97 RNFRPSFSVLSSLYSSI-PHFAIEESAIRPSILSKYGVHG--FPTLFLLNSSM-RVR-YHGSRTLDSLVAFYSDVTASL 170 (316)
Q Consensus 97 k~~~p~~~~la~~~~~~-~~v~~~~~~~~~~l~~~~~I~~--~Pti~l~~g~~-~~~-~~G~~~~~~l~~fi~~~~~~~ 170 (316)
......+.++|+.|++. ..+...|.+.+..+.+.|||.+ +|++++++.+. ... +.|..+.++|.+|+++.+..+
T Consensus 40 ~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gk 118 (130)
T cd02983 40 NKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGR 118 (130)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCC
Confidence 45688999999999998 7888888888888999999964 99999993322 333 669999999999999998754
No 214
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0029 Score=57.26 Aligned_cols=111 Identities=14% Similarity=0.230 Sum_probs=79.1
Q ss_pred CCcceEEeCCcccHHHHHhHHhccCCCeEEEEEEcC----CChHHHhhhHHHHHHHHHcCC--------CcEEEEEeCCC
Q 021221 56 QDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYAS----WCPFSRNFRPSFSVLSSLYSS--------IPHFAIEESAI 123 (316)
Q Consensus 56 ~~~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~----WC~~Ck~~~p~~~~la~~~~~--------~~~v~~~~~~~ 123 (316)
+..|-.++++. +..... -.-.+-.++|+|.|. .|.-|+....+|+-+++.+.. ..++..+|.++
T Consensus 39 ~~~VI~~n~d~--~~~~v~--~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e 114 (331)
T KOG2603|consen 39 ESGVIRMNDDK--FSKFVR--PPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE 114 (331)
T ss_pred CCCeEEecCcc--hhhhcc--CCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc
Confidence 33445555666 666622 112344567778774 599999999999999987531 45888889999
Q ss_pred ChhhHhhcCCCccceEEEE---eCcee--EEE---eCCCCHHHHHHHHHHhhCCC
Q 021221 124 RPSILSKYGVHGFPTLFLL---NSSMR--VRY---HGSRTLDSLVAFYSDVTASL 170 (316)
Q Consensus 124 ~~~l~~~~~I~~~Pti~l~---~g~~~--~~~---~G~~~~~~l~~fi~~~~~~~ 170 (316)
.+++.++++++..|++++| .|... ..+ .-....|++.+|+++.+...
T Consensus 115 ~p~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~ 169 (331)
T KOG2603|consen 115 SPQVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVN 169 (331)
T ss_pred cHHHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhhe
Confidence 9999999999999999999 22221 122 22335899999999988754
No 215
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.35 E-value=0.0014 Score=55.12 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=30.0
Q ss_pred CCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC
Q 021221 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS 112 (316)
Q Consensus 80 ~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~ 112 (316)
+.++.++.|+...||+|+.+.+.+.++.+++++
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~ 46 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK 46 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC
Confidence 468899999999999999999999999888765
No 216
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.33 E-value=0.00061 Score=48.63 Aligned_cols=69 Identities=19% Similarity=0.401 Sum_probs=43.5
Q ss_pred EEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEEeCceeEEEeCCCCHHHHHHHH
Q 021221 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFY 163 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~~g~~~~~~~G~~~~~~l~~fi 163 (316)
++.|..+|||+|.+.+..+++..-.| ..+.++.......+....|..++|.++ ++|+.+ | ..++|.+|+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~~i~~---~~~~v~~~~~~~~~~~~~g~~~vP~if-i~g~~i----g--g~~~l~~~l 71 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQENGISY---EEIPLGKDITGRSLRAVTGAMTVPQVF-IDGELI----G--GSDDLEKYF 71 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCc---EEEECCCChhHHHHHHHhCCCCcCeEE-ECCEEE----e--CHHHHHHHh
Confidence 67899999999999998888642221 222222222223344556889999984 476533 3 367777765
No 217
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.30 E-value=0.00089 Score=51.75 Aligned_cols=93 Identities=17% Similarity=0.179 Sum_probs=66.7
Q ss_pred cceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhH---HHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCC
Q 021221 58 IVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRP---SFSVLSSLYSSIPHFAIEESAIRPSILSKYGVH 134 (316)
Q Consensus 58 ~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p---~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~ 134 (316)
....++.++ +++. +. .... .|.|++.-|.-+..... ++-||.+.|++....++...+.+..+..+||+.
T Consensus 10 g~~~vd~~~--ld~~----l~-~~~~-~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~ 81 (107)
T PF07449_consen 10 GWPRVDADT--LDAF----LA-APGD-AVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVR 81 (107)
T ss_dssp TEEEE-CCC--HHHH----HH-CCSC-EEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-T
T ss_pred CCeeechhh--HHHH----Hh-CCCc-EEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCc
Confidence 345566666 7777 22 3333 55566665555554444 778888999998777777766788999999999
Q ss_pred ccceEEEE-eCceeEEEeCCCCHHH
Q 021221 135 GFPTLFLL-NSSMRVRYHGSRTLDS 158 (316)
Q Consensus 135 ~~Pti~l~-~g~~~~~~~G~~~~~~ 158 (316)
.+|+++++ +|+.+....|-++.++
T Consensus 82 ~~PaLvf~R~g~~lG~i~gi~dW~d 106 (107)
T PF07449_consen 82 RWPALVFFRDGRYLGAIEGIRDWAD 106 (107)
T ss_dssp SSSEEEEEETTEEEEEEESSSTHHH
T ss_pred cCCeEEEEECCEEEEEecCeecccc
Confidence 99999999 8888888888887654
No 218
>PRK09381 trxA thioredoxin; Provisional
Probab=97.28 E-value=4e-05 Score=59.34 Aligned_cols=52 Identities=13% Similarity=0.115 Sum_probs=44.4
Q ss_pred ccCCCccccccCCcccCChhhhhchHHHHHHHHHHH----------------HHHhHHhhhhhHhHhhcccee
Q 021221 185 EKHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFLPTLLIFAQFTWR 241 (316)
Q Consensus 185 ~~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~----------------~~~~~i~~~Ptl~~~~~~~~~ 241 (316)
+..+++.| ++ |||++|+.+ .|.+..++..+. ..+++|..+||+.+|.+|..+
T Consensus 21 ~~~vvv~f-~~--~~C~~C~~~--~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 21 DGAILVDF-WA--EWCGPCKMI--APILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA 88 (109)
T ss_pred CCeEEEEE-EC--CCCHHHHHH--hHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEEeCCeEE
Confidence 34477888 99 999999999 999999999873 278999999999999888743
No 219
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.27 E-value=3.7e-05 Score=58.02 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=43.4
Q ss_pred cCCCccccccCCcccCChhhhhchHHHHHHHHHH----------------HHHHhHHhhhhhHhHhhcccee
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYLALATAF----------------VLLRLVYIFLPTLLIFAQFTWR 241 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f----------------~~~~~~i~~~Ptl~~~~~~~~~ 241 (316)
..+++.| ++ |||++|+.+ .|.+..++..+ ++.+++|.++||+.+|.+|.-+
T Consensus 15 ~~v~v~f-~~--~~C~~C~~~--~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 15 KLLVLHF-WA--PWAEPCKQM--NQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred CEEEEEE-EC--CCCHHHHHH--hHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEE
Confidence 4577888 99 999999999 99999999883 2388999999999999888643
No 220
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.26 E-value=0.0025 Score=57.21 Aligned_cols=85 Identities=12% Similarity=0.258 Sum_probs=58.3
Q ss_pred CCCeEEEEEEcCCChHHHhhhHHHHHHHHHcC-CCcEEEE--E-------------------------------------
Q 021221 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYS-SIPHFAI--E------------------------------------- 119 (316)
Q Consensus 80 ~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~-~~~~v~~--~------------------------------------- 119 (316)
+.+.+++.|.-+.||+|+++.+.+.++.+.-+ .+..+-+ .
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~~ 195 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPPA 195 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCccc
Confidence 45678999999999999999988877654311 0000000 0
Q ss_pred ----eC----CCChhhHhhcCCCccceEEEEeC-ceeEEEeCCCCHHHHHHHHH
Q 021221 120 ----ES----AIRPSILSKYGVHGFPTLFLLNS-SMRVRYHGSRTLDSLVAFYS 164 (316)
Q Consensus 120 ----~~----~~~~~l~~~~~I~~~Pti~l~~g-~~~~~~~G~~~~~~l~~fi~ 164 (316)
+| +++..+.+++||+|+||+++-++ +.+....|..+.++|.+.+.
T Consensus 196 ~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 196 SIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence 00 01225778899999999999864 34556789999999988764
No 221
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=97.24 E-value=0.002 Score=56.06 Aligned_cols=32 Identities=16% Similarity=0.407 Sum_probs=27.1
Q ss_pred CCeEEEEEEcCCChHHHhhhHHH---HHHHHHcCC
Q 021221 81 HEYVAVLFYASWCPFSRNFRPSF---SVLSSLYSS 112 (316)
Q Consensus 81 ~~~vlV~Fya~WC~~Ck~~~p~~---~~la~~~~~ 112 (316)
+++.+|+|+.-.||||.++.|.+ +.+.+.+++
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~ 71 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE 71 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC
Confidence 35679999999999999999876 778888764
No 222
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.21 E-value=0.00064 Score=52.03 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=38.3
Q ss_pred EEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChh----hHhhcCCCccceEEEEeCcee
Q 021221 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPS----ILSKYGVHGFPTLFLLNSSMR 147 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~----l~~~~~I~~~Pti~l~~g~~~ 147 (316)
++.|..+|||+|++....+++..-.| ..+.++..+...+ +.+..|...+|+++ ++|+.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~i~~---~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf-i~g~~i 72 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLGVNP---AVHEIDKEPAGKDIENALSRLGCSPAVPAVF-VGGKLV 72 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCC---EEEEcCCCccHHHHHHHHHHhcCCCCcCeEE-ECCEEE
Confidence 77899999999999999888764332 3344433222222 34445788999983 477433
No 223
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.20 E-value=0.0031 Score=49.32 Aligned_cols=75 Identities=13% Similarity=0.154 Sum_probs=58.5
Q ss_pred CChHHHhhhHHHHHHHHHcC-CCcEEEEEeCCCChhhHhhcCCCc----cceEEEEe-CceeEEEeCCC-CHHHHHHHHH
Q 021221 92 WCPFSRNFRPSFSVLSSLYS-SIPHFAIEESAIRPSILSKYGVHG----FPTLFLLN-SSMRVRYHGSR-TLDSLVAFYS 164 (316)
Q Consensus 92 WC~~Ck~~~p~~~~la~~~~-~~~~v~~~~~~~~~~l~~~~~I~~----~Pti~l~~-g~~~~~~~G~~-~~~~l~~fi~ 164 (316)
.-..-......+.++|+.|+ +...+...|.++.....+.||+.. +|++.+++ +.......+.. +.++|.+|++
T Consensus 29 ~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~ 108 (111)
T cd03073 29 NPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLE 108 (111)
T ss_pred ChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHH
Confidence 33445678999999999999 678888888777777889999985 99999994 22233345777 9999999998
Q ss_pred Hh
Q 021221 165 DV 166 (316)
Q Consensus 165 ~~ 166 (316)
+.
T Consensus 109 ~f 110 (111)
T cd03073 109 DF 110 (111)
T ss_pred Hh
Confidence 74
No 224
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=5.8e-05 Score=66.04 Aligned_cols=99 Identities=15% Similarity=0.143 Sum_probs=72.7
Q ss_pred CCCccccccCCcccCChhhhhchHHHHHHHHHHHH---------------HHhHHhhhhhHhHhhccceehhhhcccccc
Q 021221 187 HNNTEEESCPFSWARSPENLLQQETYLALATAFVL---------------LRLVYIFLPTLLIFAQFTWRRLIRNLKLGS 251 (316)
Q Consensus 187 ~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~~---------------~~~~i~~~Ptl~~~~~~~~~~~~~~~~~~~ 251 (316)
.+.|+| ++ -|||+|+.+ +|.|..||.-|.. .-++|..-||..+|.+|..+..++-.+...
T Consensus 23 ~v~Vdf-ta--~wCGPCk~I--aP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~kid~~qGAd~~g 97 (288)
T KOG0908|consen 23 LVVVDF-TA--SWCGPCKRI--APIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIFFRNGVKIDQIQGADASG 97 (288)
T ss_pred EEEEEE-Ee--cccchHHhh--hhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEEEecCeEeeeecCCCHHH
Confidence 467899 99 999999999 9999999999842 677888899999999999888888888776
Q ss_pred cchhhhHHHHHH---------------HHHH-HHhcccccCCccccchhhhhhhc
Q 021221 252 LLEHPRTYLNRA---------------IQLF-KTLNEPCKRSNLQEGALNARAWA 290 (316)
Q Consensus 252 ~~~~~~~~~~r~---------------~~~~-~~l~~~~~~~~~~~g~~~~~awa 290 (316)
|.+...+|.+.+ ...+ ++-.=.|.++++-.+..|+..-.
T Consensus 98 Le~kv~~~~stsaa~~~~~~~~Kgq~dL~~~I~~~gleclNqsddH~l~nalkk~ 152 (288)
T KOG0908|consen 98 LEEKVAKYASTSAASSGTGDIVKGQMDLKPFIDKVGLECLNQSDDHFLKNALKKN 152 (288)
T ss_pred HHHHHHHHhccCcccccCCCcccceehhhhhhhhhcceeeccccccchHHHHhhc
Confidence 777777776331 1112 33333466666666665654433
No 225
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.18 E-value=0.0023 Score=45.64 Aligned_cols=67 Identities=13% Similarity=0.220 Sum_probs=42.4
Q ss_pred EEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHh---hcCCCccceEEEEeCceeEEEeCCCCHHHHHH
Q 021221 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILS---KYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVA 161 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~---~~~I~~~Pti~l~~g~~~~~~~G~~~~~~l~~ 161 (316)
+..|..++|++|++.+..+++. ++. +...|.+.++.... +.|..++|++++ +|+. +.|..+.+.|.+
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~-----~i~-~~~~di~~~~~~~~~~~~~g~~~vP~v~~-~g~~---~~~G~~~~~~~~ 70 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH-----GIA-FEEINIDEQPEAIDYVKAQGFRQVPVIVA-DGDL---SWSGFRPDKLKA 70 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC-----CCc-eEEEECCCCHHHHHHHHHcCCcccCEEEE-CCCc---EEeccCHHHHHh
Confidence 3578899999999999998863 322 23334444444433 348889999755 5532 344556766654
No 226
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.18 E-value=5.4e-05 Score=57.74 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=41.9
Q ss_pred CCCccccccCCcccCChhhhhchHHHHHHHHHHH--------------------HHHhHHhhhhhHhHhhccc
Q 021221 187 HNNTEEESCPFSWARSPENLLQQETYLALATAFV--------------------LLRLVYIFLPTLLIFAQFT 239 (316)
Q Consensus 187 ~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~--------------------~~~~~i~~~Ptl~~~~~~~ 239 (316)
.+++.| ++ +||.+|+.+ .|.+..++..|. +.+++|.++||+.+|.+|.
T Consensus 19 ~~~v~f-~a--~wC~~C~~~--~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 86 (104)
T cd02997 19 HVLVMF-YA--PWCGHCKKM--KPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGK 86 (104)
T ss_pred CEEEEE-EC--CCCHHHHHh--CHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCC
Confidence 467788 99 999999999 999999998774 1688999999999999886
No 227
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.16 E-value=0.0013 Score=46.02 Aligned_cols=56 Identities=21% Similarity=0.377 Sum_probs=37.4
Q ss_pred EEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCC----hhhHhhcCCCccceEEEEeCcee
Q 021221 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIR----PSILSKYGVHGFPTLFLLNSSMR 147 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~----~~l~~~~~I~~~Pti~l~~g~~~ 147 (316)
++.|+++||++|++..+.+++.. +. +...|.+.+ ..+.+..+..++|+++ ++|+.+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~-~~~~di~~~~~~~~~l~~~~~~~~~P~~~-~~~~~i 61 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IE-FEEIDILEDGELREELKELSGWPTVPQIF-INGEFI 61 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----Cc-EEEEECCCCHHHHHHHHHHhCCCCcCEEE-ECCEEE
Confidence 57899999999999999998775 22 222233333 3445556778899774 366443
No 228
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.12 E-value=0.00011 Score=60.03 Aligned_cols=51 Identities=12% Similarity=0.105 Sum_probs=42.3
Q ss_pred ccCCCccccccCCcccCChhhhhchHHHHHHHHHHH------------------HHHhHHhhhhhHhHhh-ccce
Q 021221 185 EKHNNTEEESCPFSWARSPENLLQQETYLALATAFV------------------LLRLVYIFLPTLLIFA-QFTW 240 (316)
Q Consensus 185 ~~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~------------------~~~~~i~~~Ptl~~~~-~~~~ 240 (316)
.+.+++.| ++ +||++|+.+ .|.+.+++..|. ..+|+|.++||+.+|. +|.-
T Consensus 20 gk~vvV~F-~A--~WC~~C~~~--~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~ 89 (142)
T cd02950 20 GKPTLVEF-YA--DWCTVCQEM--APDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNE 89 (142)
T ss_pred CCEEEEEE-EC--CcCHHHHHh--HHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCE
Confidence 34477888 99 999999999 999999998763 2789999999999994 5653
No 229
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.09 E-value=0.00027 Score=63.58 Aligned_cols=55 Identities=18% Similarity=0.156 Sum_probs=47.5
Q ss_pred CCCccccccCCcccCChhhhhchHHHHHHHHHHHH---------------------HHhHHhhhhhHhHhhccce--ehh
Q 021221 187 HNNTEEESCPFSWARSPENLLQQETYLALATAFVL---------------------LRLVYIFLPTLLIFAQFTW--RRL 243 (316)
Q Consensus 187 ~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~~---------------------~~~~i~~~Ptl~~~~~~~~--~~~ 243 (316)
-++|.| || -||+-.+.+ .|+|++.|..|.. .||.|..|||++.|.+|.. ++|
T Consensus 15 lvfv~F-yA--dWCrFSq~L--~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~~~rEY 89 (375)
T KOG0912|consen 15 LVFVNF-YA--DWCRFSQML--KPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEMMKREY 89 (375)
T ss_pred EEeeee-eh--hhchHHHHH--hHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccchhhhhh
Confidence 378899 99 999999999 9999999999863 9999999999999999985 344
Q ss_pred hhc
Q 021221 244 IRN 246 (316)
Q Consensus 244 ~~~ 246 (316)
.+.
T Consensus 90 Rg~ 92 (375)
T KOG0912|consen 90 RGQ 92 (375)
T ss_pred ccc
Confidence 443
No 230
>PTZ00051 thioredoxin; Provisional
Probab=97.06 E-value=4.8e-05 Score=57.59 Aligned_cols=51 Identities=10% Similarity=0.124 Sum_probs=43.0
Q ss_pred cCCCccccccCCcccCChhhhhchHHHHHHHHHHH---------------HHHhHHhhhhhHhHhhcccee
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYLALATAFV---------------LLRLVYIFLPTLLIFAQFTWR 241 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~---------------~~~~~i~~~Ptl~~~~~~~~~ 241 (316)
..+++.| ++ +||++|+.+ .|.+..++..+. ..+++|.++||+.++.+|.-+
T Consensus 19 ~~vli~f-~~--~~C~~C~~~--~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 19 ELVIVDF-YA--EWCGPCKRI--APFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFKNGSVV 84 (98)
T ss_pred CeEEEEE-EC--CCCHHHHHH--hHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEeCCeEE
Confidence 3466777 99 999999999 999999998763 388999999999999888643
No 231
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0088 Score=49.49 Aligned_cols=104 Identities=18% Similarity=0.264 Sum_probs=73.2
Q ss_pred CCcceEEeCCcccHHHHHhHHhccCCCeEEEEEE-cCCChHHHhhhHHHHHHHHHcCC--CcEEEEEeC-----------
Q 021221 56 QDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFY-ASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEES----------- 121 (316)
Q Consensus 56 ~~~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fy-a~WC~~Ck~~~p~~~~la~~~~~--~~~v~~~~~----------- 121 (316)
+......+++.+++.++ .+++|+++|| ..++|-|-..+-.|++...+|.. ...+++.-.
T Consensus 12 dF~Lp~~~g~~v~Lsd~-------~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k 84 (157)
T COG1225 12 DFELPDQDGETVSLSDL-------RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEK 84 (157)
T ss_pred CeEeecCCCCEEehHHh-------cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHH
Confidence 44555667777888888 6789999999 78999999999999998888765 455555311
Q ss_pred ---------CCChhhHhhcCCCc------------cceEEEE--eCceeEEEeCCC---CHHHHHHHHHHh
Q 021221 122 ---------AIRPSILSKYGVHG------------FPTLFLL--NSSMRVRYHGSR---TLDSLVAFYSDV 166 (316)
Q Consensus 122 ---------~~~~~l~~~~~I~~------------~Pti~l~--~g~~~~~~~G~~---~~~~l~~fi~~~ 166 (316)
|.+..+++.|||.. .++.+++ +|.....+.... ..+++.+.+++.
T Consensus 85 ~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 85 HGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred hCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 23457888888843 4677788 577776664433 456666666553
No 232
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.02 E-value=0.00013 Score=55.55 Aligned_cols=48 Identities=25% Similarity=0.275 Sum_probs=41.5
Q ss_pred CCCccccccCCcccCChhhhhchHHHHHHHHHHH-------------------HHHhHHhhhhhHhHhhccc
Q 021221 187 HNNTEEESCPFSWARSPENLLQQETYLALATAFV-------------------LLRLVYIFLPTLLIFAQFT 239 (316)
Q Consensus 187 ~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~-------------------~~~~~i~~~Ptl~~~~~~~ 239 (316)
.+++.| ++ +||.+|+++ .|.+..++..+. +.+++|.++|++.+|.+|.
T Consensus 20 ~~~v~f-~a--~~C~~C~~~--~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~~~~~ 86 (105)
T cd02998 20 DVLVEF-YA--PWCGHCKNL--APEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFFPKGS 86 (105)
T ss_pred cEEEEE-EC--CCCHHHHhh--ChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEEeCCC
Confidence 467778 99 999999999 999999998863 3689999999999998774
No 233
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.01 E-value=0.0025 Score=47.24 Aligned_cols=59 Identities=20% Similarity=0.348 Sum_probs=42.3
Q ss_pred EEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeC---C-----------------------------CChhhHhhcC
Q 021221 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEES---A-----------------------------IRPSILSKYG 132 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~---~-----------------------------~~~~l~~~~~ 132 (316)
++.|+.+.||+|..+.+.++++....++...+..... . .+..+..++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999766555333322211 0 0124677889
Q ss_pred CCccceEEEEe
Q 021221 133 VHGFPTLFLLN 143 (316)
Q Consensus 133 I~~~Pti~l~~ 143 (316)
+.++||+++.+
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999999854
No 234
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.94 E-value=0.0046 Score=45.35 Aligned_cols=77 Identities=13% Similarity=0.225 Sum_probs=59.2
Q ss_pred EEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEEe--C-ceeEEEeCCCCHHHHHH
Q 021221 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLN--S-SMRVRYHGSRTLDSLVA 161 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~~--g-~~~~~~~G~~~~~~l~~ 161 (316)
++.|..+.|+-|......++++....+ ..+..+|.+.++++..+|+. .+|.+.+-+ + .......+..+.+.|.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~--~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~ 78 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP--FELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRA 78 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST--CEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC--ceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHH
Confidence 788999999999999999998766554 56777788888999999995 799977642 1 12455667889999999
Q ss_pred HHH
Q 021221 162 FYS 164 (316)
Q Consensus 162 fi~ 164 (316)
+|+
T Consensus 79 ~L~ 81 (81)
T PF05768_consen 79 WLE 81 (81)
T ss_dssp HHH
T ss_pred HhC
Confidence 885
No 235
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=96.88 E-value=0.00012 Score=54.91 Aligned_cols=48 Identities=19% Similarity=0.158 Sum_probs=41.9
Q ss_pred CCCccccccCCcccCChhhhhchHHHHHHHHHHH------------------HHHhHHhhhhhHhHhhccc
Q 021221 187 HNNTEEESCPFSWARSPENLLQQETYLALATAFV------------------LLRLVYIFLPTLLIFAQFT 239 (316)
Q Consensus 187 ~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~------------------~~~~~i~~~Ptl~~~~~~~ 239 (316)
.+++.| ++ +||++|+.+ .+.+..++..+. +.+++|.++||+.++.++.
T Consensus 17 ~~~v~f-~~--~~C~~C~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~~ 82 (101)
T cd02961 17 DVLVEF-YA--PWCGHCKAL--APEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGS 82 (101)
T ss_pred cEEEEE-EC--CCCHHHHhh--hHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCCC
Confidence 577788 99 999999999 999999998872 3889999999999998873
No 236
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.87 E-value=0.00022 Score=60.49 Aligned_cols=52 Identities=15% Similarity=0.021 Sum_probs=44.6
Q ss_pred CCCccccccCCcccCChhhhhchHHHHHHHHHH--------------HHHHhHHhhhhhHhHhhccceehh
Q 021221 187 HNNTEEESCPFSWARSPENLLQQETYLALATAF--------------VLLRLVYIFLPTLLIFAQFTWRRL 243 (316)
Q Consensus 187 ~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f--------------~~~~~~i~~~Ptl~~~~~~~~~~~ 243 (316)
.+++.| |+ |||++|+.+ .|.+..||..| +..+|.|...||+++|.+|.-+..
T Consensus 85 ~VVV~F-ya--~wc~~Ck~m--~~~l~~LA~~~~~vkF~kVd~d~~~l~~~f~v~~vPTlllyk~G~~v~~ 150 (175)
T cd02987 85 TVVVHI-YE--PGIPGCAAL--NSSLLCLAAEYPAVKFCKIRASATGASDEFDTDALPALLVYKGGELIGN 150 (175)
T ss_pred EEEEEE-EC--CCCchHHHH--HHHHHHHHHHCCCeEEEEEeccchhhHHhCCCCCCCEEEEEECCEEEEE
Confidence 467788 99 999999999 99999999876 237899999999999999986543
No 237
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.86 E-value=0.0029 Score=46.49 Aligned_cols=73 Identities=11% Similarity=0.142 Sum_probs=48.6
Q ss_pred EEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhh---HhhcCCCccceEEEEeCceeEEEeCCCCHHHHHH
Q 021221 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSI---LSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVA 161 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l---~~~~~I~~~Pti~l~~g~~~~~~~G~~~~~~l~~ 161 (316)
++.|..+||++|++.+..|++. ++. +...|.+.+++. ....|..++|++++ ++. ..+..+.+.|.+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~-----gI~-~~~idi~~~~~~~~~~~~~g~~~vPvv~i-~~~----~~~Gf~~~~l~~ 71 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR-----GFD-FEMINVDRVPEAAETLRAQGFRQLPVVIA-GDL----SWSGFRPDMINR 71 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC-----CCc-eEEEECCCCHHHHHHHHHcCCCCcCEEEE-CCE----EEecCCHHHHHH
Confidence 6788999999999999888652 332 333344444432 33458889999965 442 233558888988
Q ss_pred HHHHhhC
Q 021221 162 FYSDVTA 168 (316)
Q Consensus 162 fi~~~~~ 168 (316)
.+..+..
T Consensus 72 ~~~~~~~ 78 (81)
T PRK10329 72 LHPAPHA 78 (81)
T ss_pred HHHhhhh
Confidence 8876653
No 238
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=96.86 E-value=0.00021 Score=55.85 Aligned_cols=49 Identities=8% Similarity=-0.033 Sum_probs=42.2
Q ss_pred cCCCccccccCCcccCChhhhhchHHHHHHHHHHH----------------HHHhHHhhhhhHhHhhccc
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFLPTLLIFAQFT 239 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~----------------~~~~~i~~~Ptl~~~~~~~ 239 (316)
+-+.+.| ++ +||++|+.+ .|.+.++|..|. ...|+|..-||..+|.+|.
T Consensus 15 klVVVdF-~a--~WC~pCk~m--dp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngk 79 (114)
T cd02986 15 KVLVLRF-GR--DEDAVCLQL--DDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQ 79 (114)
T ss_pred CEEEEEE-eC--CCChhHHHH--HHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCc
Confidence 3466788 99 999999999 999999998763 3888999999999888876
No 239
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=96.82 E-value=0.00022 Score=58.08 Aligned_cols=49 Identities=10% Similarity=0.054 Sum_probs=40.6
Q ss_pred cCCCccccccCCcccCChhhhhchHHHHHHHHHHH----------------HHHhHHhhhhhHh-Hhhccc
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFLPTLL-IFAQFT 239 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~----------------~~~~~i~~~Ptl~-~~~~~~ 239 (316)
..++++| ++ +||++|+.+ .|.+.++|..+- ..+|+|.+-||+. +|.+|.
T Consensus 24 ~lVVvdF-~A--~WCgpCk~m--~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 24 RLVVIRF-GH--DWDETCMQM--DEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKH 89 (142)
T ss_pred CEEEEEE-EC--CCChhHHHH--HHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCe
Confidence 3477889 99 999999999 999999998862 3889999777777 777765
No 240
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=96.79 E-value=0.00034 Score=54.81 Aligned_cols=48 Identities=10% Similarity=-0.150 Sum_probs=39.6
Q ss_pred CCccccccCCcccCChhhhhchHHHHHHHHHH---------------HHHHhHHhhhhhHhHhhccce
Q 021221 188 NNTEEESCPFSWARSPENLLQQETYLALATAF---------------VLLRLVYIFLPTLLIFAQFTW 240 (316)
Q Consensus 188 ~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f---------------~~~~~~i~~~Ptl~~~~~~~~ 240 (316)
..+.| ++ +||++|+.+ +|.+.+++..+ +..+|+|.+.||+.+|.+|..
T Consensus 25 vvv~f-~a--~wC~~C~~~--~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~ 87 (113)
T cd02975 25 LVVFS-SK--EGCQYCEVT--KQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGK 87 (113)
T ss_pred EEEEe-CC--CCCCChHHH--HHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCee
Confidence 34455 88 999999999 99999999764 238899999999999987653
No 241
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=96.72 E-value=0.003 Score=45.84 Aligned_cols=55 Identities=15% Similarity=0.401 Sum_probs=36.3
Q ss_pred EEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCCh----hhHhhcCCCccceEEEEeCce
Q 021221 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRP----SILSKYGVHGFPTLFLLNSSM 146 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~----~l~~~~~I~~~Pti~l~~g~~ 146 (316)
++.|..+|||+|++....+++..-. +...+.+.++ ++.+..|..++|+++ ++|+.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~------~~~~di~~~~~~~~~~~~~~g~~~vP~i~-i~g~~ 59 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVT------FTEIRVDGDPALRDEMMQRSGRRTVPQIF-IGDVH 59 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCC------cEEEEecCCHHHHHHHHHHhCCCCcCEEE-ECCEE
Confidence 4678899999999999999875322 2222333333 345556888999984 36643
No 242
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=96.69 E-value=0.00076 Score=50.72 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=41.0
Q ss_pred CCCccccccCCcccCChhhhhchHHHHHHHHHHH----------------HHHhHHhhhhhHhHhhccc
Q 021221 187 HNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFLPTLLIFAQFT 239 (316)
Q Consensus 187 ~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~----------------~~~~~i~~~Ptl~~~~~~~ 239 (316)
.+++.| ++ |||++|+.+ .|.+..++..+- +.+++|..+||+.+|..|.
T Consensus 16 ~vvi~f-~~--~~C~~C~~~--~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 16 PVLVDF-WA--PWCGPCKMI--APILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred cEEEEE-EC--CCCHHHHHh--CHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence 456677 88 999999999 899999987763 3789999999999998776
No 243
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.66 E-value=0.0003 Score=60.49 Aligned_cols=59 Identities=19% Similarity=0.105 Sum_probs=48.1
Q ss_pred CCCccccccCCcccCChhhhhchHHHHHHHHHHH------------HHHhHHhhhhhHhHhhcccee-hhhhccccc
Q 021221 187 HNNTEEESCPFSWARSPENLLQQETYLALATAFV------------LLRLVYIFLPTLLIFAQFTWR-RLIRNLKLG 250 (316)
Q Consensus 187 ~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~------------~~~~~i~~~Ptl~~~~~~~~~-~~~~~~~~~ 250 (316)
.++|.| |+ |||++|+.| .|.+..||..|. ..+|.+...||+.+|.+|..+ ++++-..+|
T Consensus 104 ~VVV~F-ya--~wc~~C~~m--~~~l~~LA~k~~~vkFvkI~ad~~~~~~~i~~lPTlliyk~G~~v~~ivG~~~~g 175 (192)
T cd02988 104 WVVVHL-YK--DGIPLCRLL--NQHLSELARKFPDTKFVKIISTQCIPNYPDKNLPTILVYRNGDIVKQFIGLLEFG 175 (192)
T ss_pred EEEEEE-EC--CCCchHHHH--HHHHHHHHHHCCCCEEEEEEhHHhHhhCCCCCCCEEEEEECCEEEEEEeCchhhC
Confidence 367888 99 999999999 999999999873 268999999999999999865 344444444
No 244
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=96.66 E-value=0.00025 Score=54.42 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=37.2
Q ss_pred ccCCCccccccCCcccCChhhhhchHHH---HHHHHHHH--------------------HHHhHHhhhhhHhHhhc
Q 021221 185 EKHNNTEEESCPFSWARSPENLLQQETY---LALATAFV--------------------LLRLVYIFLPTLLIFAQ 237 (316)
Q Consensus 185 ~~~~~v~f~~~~~pw~~~~~~~l~~~~~---~~lA~~f~--------------------~~~~~i~~~Ptl~~~~~ 237 (316)
.+.+++.| ++ |||++|+.+ .+.+ ..++..+. ..+++|.++||+.+|.+
T Consensus 11 ~k~vlv~f-~a--~wC~~C~~~--~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 11 GKPVFVDF-TA--DWCVTCKVN--EKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred CCeEEEEE-Ec--chhHHHHHH--HHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 34578888 99 999999999 7766 34555442 26889999999999984
No 245
>PHA02125 thioredoxin-like protein
Probab=96.64 E-value=0.00026 Score=51.17 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=32.0
Q ss_pred ccccccCCcccCChhhhhchHHHHHHHHHHH----------HHHhHHhhhhhHh
Q 021221 190 TEEESCPFSWARSPENLLQQETYLALATAFV----------LLRLVYIFLPTLL 233 (316)
Q Consensus 190 v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~----------~~~~~i~~~Ptl~ 233 (316)
+.| ++ |||++|+.+ .|.+..++..|. ..+|+|.++||+.
T Consensus 3 v~f-~a--~wC~~Ck~~--~~~l~~~~~~~~~vd~~~~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 3 YLF-GA--EWCANCKMV--KPMLANVEYTYVDVDTDEGVELTAKHHIRSLPTLV 51 (75)
T ss_pred EEE-EC--CCCHhHHHH--HHHHHHHhheEEeeeCCCCHHHHHHcCCceeCeEE
Confidence 445 88 999999999 999887765552 3889999999987
No 246
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=96.58 E-value=0.00051 Score=52.06 Aligned_cols=51 Identities=10% Similarity=-0.058 Sum_probs=41.9
Q ss_pred cCCCccccccCCcccCChhhhhchHHHHHHHHHHH----------------HHHhHHhhhhhHhHhhcccee
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFLPTLLIFAQFTWR 241 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~----------------~~~~~i~~~Ptl~~~~~~~~~ 241 (316)
+.+++.| ++ +||+.|+.+ .|.+..++..+. ..+++|.++||+.++.+|..+
T Consensus 14 ~~vlv~f-~a--~~C~~C~~~--~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 14 RLILVLY-TS--PTCGPCRTL--KPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred CeEEEEE-EC--CCChhHHHH--HHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEE
Confidence 3456677 88 999999999 999989887763 278999999999999887643
No 247
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=96.54 E-value=0.041 Score=42.35 Aligned_cols=82 Identities=16% Similarity=0.165 Sum_probs=53.3
Q ss_pred ccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCC----ChhhHhhcCCC-ccceEEEE-eCceeEEEe
Q 021221 78 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAI----RPSILSKYGVH-GFPTLFLL-NSSMRVRYH 151 (316)
Q Consensus 78 ~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~----~~~l~~~~~I~-~~Pti~l~-~g~~~~~~~ 151 (316)
.+.+++++|.=.++.||-+.+....|++..+..++...+...+.-+ ...++++|||+ .-|.++++ ||+.+..-.
T Consensus 16 ~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~~g~~v~~aS 95 (105)
T PF11009_consen 16 ESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIKNGKVVWHAS 95 (105)
T ss_dssp H---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEETTEEEEEEE
T ss_pred hcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEECCEEEEECc
Confidence 3467888888899999999999999999999887734444444333 34689999997 58999999 777765443
Q ss_pred -CCCCHHHH
Q 021221 152 -GSRTLDSL 159 (316)
Q Consensus 152 -G~~~~~~l 159 (316)
+..+.++|
T Consensus 96 H~~It~~~l 104 (105)
T PF11009_consen 96 HWDITAEAL 104 (105)
T ss_dssp GGG-SHHHH
T ss_pred cccCCHHhc
Confidence 45666665
No 248
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.0079 Score=44.06 Aligned_cols=57 Identities=11% Similarity=0.369 Sum_probs=36.5
Q ss_pred EEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCC--CChhhHhhc-CCCccceEEEEeCc
Q 021221 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESA--IRPSILSKY-GVHGFPTLFLLNSS 145 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~--~~~~l~~~~-~I~~~Pti~l~~g~ 145 (316)
++.|..++||+|++....+++..-.| ..+.+++.+ +..+..++- |.+++|++++ +++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~g~~~---~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i-~~~ 62 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRKGVDY---EEIDVDDDEPEEAREMVKRGKGQRTVPQIFI-GGK 62 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHcCCCc---EEEEecCCcHHHHHHHHHHhCCCCCcCEEEE-CCE
Confidence 67889999999999998888432222 222333222 223444444 8899999986 554
No 249
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=96.49 E-value=0.00075 Score=53.27 Aligned_cols=51 Identities=10% Similarity=-0.024 Sum_probs=39.2
Q ss_pred ccCCCccccccCCcccCChhhhhchHHHHHHHHHHH-----------------HHHhHHhh--hhhHhHhh-ccce
Q 021221 185 EKHNNTEEESCPFSWARSPENLLQQETYLALATAFV-----------------LLRLVYIF--LPTLLIFA-QFTW 240 (316)
Q Consensus 185 ~~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~-----------------~~~~~i~~--~Ptl~~~~-~~~~ 240 (316)
++.+++.| ++ +||++|+.+ .|.+...+.... ..++++.+ +||+.++. +|.-
T Consensus 19 ~kpVlV~F-~a--~WC~~C~~~--~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~ 89 (117)
T cd02959 19 GKPLMLLI-HK--TWCGACKAL--KPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDV 89 (117)
T ss_pred CCcEEEEE-eC--CcCHHHHHH--HHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCC
Confidence 44578888 99 999999999 888888766432 15677765 89999994 6664
No 250
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.48 E-value=0.012 Score=41.90 Aligned_cols=55 Identities=11% Similarity=0.297 Sum_probs=36.1
Q ss_pred EEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCCh----hhHhhcCCC-ccceEEEEeCce
Q 021221 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRP----SILSKYGVH-GFPTLFLLNSSM 146 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~----~l~~~~~I~-~~Pti~l~~g~~ 146 (316)
++.|..+||++|++.+..+++. ++.. ...+.+.++ .+.+..|.. ++|+++ ++|+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~-~~i~i~~~~~~~~~~~~~~~~~~~vP~v~-i~g~~ 61 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVDY-EEIDVDGDPALREEMINRSGGRRTVPQIF-IGDVH 61 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCcE-EEEECCCCHHHHHHHHHHhCCCCccCEEE-ECCEE
Confidence 5789999999999999998874 2222 223333333 344456776 899875 47643
No 251
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.47 E-value=0.024 Score=56.30 Aligned_cols=140 Identities=9% Similarity=0.013 Sum_probs=89.1
Q ss_pred hccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEE-eCce-eEEEeCCC
Q 021221 77 HKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSM-RVRYHGSR 154 (316)
Q Consensus 77 ~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g~~-~~~~~G~~ 154 (316)
..+-.++|-+.++.+-|..|..+...++++++.-+. ..+...+.+ ...|++.+. +|+. -.+|.|--
T Consensus 14 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~-i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~P 81 (517)
T PRK15317 14 LELLERPIELVASLDDSEKSAELKELLEEIASLSDK-ITVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGIP 81 (517)
T ss_pred HHhCCCCEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEccCC-----------CCCCEEEEEcCCccceEEEEecC
Confidence 334446666666666899999999999999987644 333332210 347999988 4433 48999987
Q ss_pred CHHHHHHHHHHhhC---CCCCCCcccccccCc-cccCC-CccccccCCcccCChhhhhchHHHHHHHHHH----------
Q 021221 155 TLDSLVAFYSDVTA---SLDKISPDKVGKASN-HEKHN-NTEEESCPFSWARSPENLLQQETYLALATAF---------- 219 (316)
Q Consensus 155 ~~~~l~~fi~~~~~---~~~~~~~~~~~~~~~-~~~~~-~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f---------- 219 (316)
.=.++..||..... +....+. +..+..+ .++.. ...| .. |.|.+|.+. ......+|..-
T Consensus 82 ~g~Ef~s~i~~i~~~~~~~~~l~~-~~~~~i~~~~~~~~i~~f-v~--~~Cp~Cp~~--v~~~~~~a~~~~~i~~~~id~ 155 (517)
T PRK15317 82 MGHEFTSLVLALLQVGGHPPKLDQ-EVIEQIKALDGDFHFETY-VS--LSCHNCPDV--VQALNLMAVLNPNITHTMIDG 155 (517)
T ss_pred ccHHHHHHHHHHHHhcCCCCCCCH-HHHHHHHhcCCCeEEEEE-Ec--CCCCCcHHH--HHHHHHHHHhCCCceEEEEEc
Confidence 77778888777654 3333322 2111111 12222 2233 66 999999998 67777777652
Q ss_pred -----HHHHhHHhhhhhHhH
Q 021221 220 -----VLLRLVYIFLPTLLI 234 (316)
Q Consensus 220 -----~~~~~~i~~~Ptl~~ 234 (316)
...+|+|.+.|++..
T Consensus 156 ~~~~~~~~~~~v~~VP~~~i 175 (517)
T PRK15317 156 ALFQDEVEARNIMAVPTVFL 175 (517)
T ss_pred hhCHhHHHhcCCcccCEEEE
Confidence 238999999999843
No 252
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.45 E-value=0.013 Score=41.79 Aligned_cols=54 Identities=17% Similarity=0.296 Sum_probs=37.2
Q ss_pred EEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCCh----hhHhhcCCCccceEEEEeCc
Q 021221 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRP----SILSKYGVHGFPTLFLLNSS 145 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~----~l~~~~~I~~~Pti~l~~g~ 145 (316)
++.|..+||++|++....+++. ++. +...+.+.++ ++.+..+-..+|++++ +|+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-----gi~-~~~~di~~~~~~~~el~~~~g~~~vP~v~i-~~~ 60 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-----GLP-YVEINIDIFPERKAELEERTGSSVVPQIFF-NEK 60 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-----CCc-eEEEECCCCHHHHHHHHHHhCCCCcCEEEE-CCE
Confidence 6789999999999999988874 222 2222443333 4666668888999844 664
No 253
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.27 E-value=0.029 Score=47.79 Aligned_cols=104 Identities=16% Similarity=0.294 Sum_probs=76.3
Q ss_pred CCcceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCc
Q 021221 56 QDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHG 135 (316)
Q Consensus 56 ~~~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~ 135 (316)
-+.|..+.+.+ +-+.+. ....+-.|+|..|...-+.|.-+...++.++.+|+.+.++.+...+. ...|-=..
T Consensus 90 fG~V~~ISg~d--yv~EVT--~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~c----IpNYPe~n 161 (240)
T KOG3170|consen 90 FGEVFPISGPD--YVKEVT--KASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTC----IPNYPESN 161 (240)
T ss_pred ccceeeccchH--HHHHHH--hccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccc----cCCCcccC
Confidence 45677778877 444322 23567889999999999999999999999999999998888764332 22355567
Q ss_pred cceEEEE-eCceeEEEeC------C-CCHHHHHHHHHHhh
Q 021221 136 FPTLFLL-NSSMRVRYHG------S-RTLDSLVAFYSDVT 167 (316)
Q Consensus 136 ~Pti~l~-~g~~~~~~~G------~-~~~~~l~~fi~~~~ 167 (316)
.||+++| .|.....+.| . .+.+++..++-+.-
T Consensus 162 lPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qag 201 (240)
T KOG3170|consen 162 LPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQAG 201 (240)
T ss_pred CCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhcc
Confidence 9999999 7765555443 2 36788887777654
No 254
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.19 E-value=0.041 Score=46.20 Aligned_cols=70 Identities=20% Similarity=0.298 Sum_probs=57.2
Q ss_pred hhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEE-e-CceeEEEeCC-CCHHHHHHHHHHhhCCCC
Q 021221 98 NFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-N-SSMRVRYHGS-RTLDSLVAFYSDVTASLD 171 (316)
Q Consensus 98 ~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~-g~~~~~~~G~-~~~~~l~~fi~~~~~~~~ 171 (316)
.....|.++|+.+.+...++... +.++++++++.. |++++| + ++....|.|. .+.++|.+||..+.-|..
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v 79 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLV 79 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSC
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhccccc
Confidence 34568899999998766676654 477999999999 999999 4 3567899998 899999999999987653
No 255
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=96.05 E-value=0.024 Score=48.04 Aligned_cols=30 Identities=27% Similarity=0.582 Sum_probs=23.6
Q ss_pred EEEcCCChHHHhhhHHHHHHHHHcCCCcEE
Q 021221 87 LFYASWCPFSRNFRPSFSVLSSLYSSIPHF 116 (316)
Q Consensus 87 ~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v 116 (316)
+|.-|.|+.|-.+.|.+.++...|++.+.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~ 31 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEF 31 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEE
Confidence 689999999999999999999999874433
No 256
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.96 E-value=0.0018 Score=47.01 Aligned_cols=40 Identities=8% Similarity=0.036 Sum_probs=33.7
Q ss_pred ccCCcccCChhhhhchHHHHHHHHHHH----------------HHHhHHhhhhhHhHhhccc
Q 021221 194 SCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFLPTLLIFAQFT 239 (316)
Q Consensus 194 ~~~~pw~~~~~~~l~~~~~~~lA~~f~----------------~~~~~i~~~Ptl~~~~~~~ 239 (316)
++ |||++|+.+ .|.++.++..+- ..++++.+.||+.+ +|.
T Consensus 7 ~~--~~C~~C~~~--~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~ 62 (82)
T TIGR00411 7 TS--PTCPYCPAA--KRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD 62 (82)
T ss_pred EC--CCCcchHHH--HHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE
Confidence 77 999999999 999999988763 38899999999875 554
No 257
>PTZ00062 glutaredoxin; Provisional
Probab=95.89 E-value=0.0016 Score=56.52 Aligned_cols=57 Identities=12% Similarity=-0.046 Sum_probs=45.7
Q ss_pred CccccccCCcccCChhhhhchHHHHHHHHHHH-------HHHhHHhhhhhHhHhhccceehhhhccccc
Q 021221 189 NTEEESCPFSWARSPENLLQQETYLALATAFV-------LLRLVYIFLPTLLIFAQFTWRRLIRNLKLG 250 (316)
Q Consensus 189 ~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~-------~~~~~i~~~Ptl~~~~~~~~~~~~~~~~~~ 250 (316)
++.| .+ +||..|+.+ .|.+.+|+..|- ...++|.+.||+.+|.+|.-+..+...+..
T Consensus 21 vl~f-~a--~w~~~C~~m--~~vl~~l~~~~~~~~F~~V~~d~~V~~vPtfv~~~~g~~i~r~~G~~~~ 84 (204)
T PTZ00062 21 VLYV-KS--SKEPEYEQL--MDVCNALVEDFPSLEFYVVNLADANNEYGVFEFYQNSQLINSLEGCNTS 84 (204)
T ss_pred EEEE-eC--CCCcchHHH--HHHHHHHHHHCCCcEEEEEccccCcccceEEEEEECCEEEeeeeCCCHH
Confidence 3444 78 999999999 999999999873 255999999999999999876665554443
No 258
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=95.88 E-value=0.0095 Score=49.36 Aligned_cols=64 Identities=9% Similarity=0.121 Sum_probs=41.7
Q ss_pred CCcccHHHHHhHHhccCCCeEEEEE-EcCCChHHHhh-hHHHHHHHHHcC--CCc-EEEEE--eCCCChhhHhhcCC
Q 021221 64 GDEVSLQMALNMVHKNSHEYVAVLF-YASWCPFSRNF-RPSFSVLSSLYS--SIP-HFAIE--ESAIRPSILSKYGV 133 (316)
Q Consensus 64 ~~~~~~~~~~~~i~~~~~~~vlV~F-ya~WC~~Ck~~-~p~~~~la~~~~--~~~-~v~~~--~~~~~~~l~~~~~I 133 (316)
++.+++.+. . .++++++.| .+.||+.|... .+.|.+..++|. +.. .+++. +...+...++++++
T Consensus 18 g~~v~L~~~----~--~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 18 PNPVNLSEL----F--KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred CceeeHHHH----h--CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 667777774 1 344455554 59999999998 999999998885 332 44443 22234456667766
No 259
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=95.71 E-value=0.0025 Score=46.48 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=40.8
Q ss_pred cCCCccccccCCcccCChhhhhchHHHHHHHHHH---------------HHHHhHHhhhhhHhHhhccc
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYLALATAF---------------VLLRLVYIFLPTLLIFAQFT 239 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f---------------~~~~~~i~~~Ptl~~~~~~~ 239 (316)
...++.| ++ +||+.|..+ .+.+.+++... ++.++++.++|++.++.+|.
T Consensus 11 ~~~ll~~-~~--~~C~~C~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 11 KPVVVDF-WA--PWCGPCKAI--APVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred CcEEEEE-EC--CCChhHHHh--hHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCE
Confidence 3356677 88 999999999 99999988762 23789999999999998886
No 260
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=95.71 E-value=0.0015 Score=51.93 Aligned_cols=52 Identities=8% Similarity=-0.074 Sum_probs=38.9
Q ss_pred cCCCccccccCCcccCChhhhhchHHHHHHHHHHHH-------------------------HH----hHHhhhhhHhHhh
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYLALATAFVL-------------------------LR----LVYIFLPTLLIFA 236 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~~-------------------------~~----~~i~~~Ptl~~~~ 236 (316)
...++.| ++ |||++|+.+ .|.+..++..... .+ .+|.+.||+.+|.
T Consensus 24 ~~~iv~f-~~--~~Cp~C~~~--~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k 98 (122)
T TIGR01295 24 ETATFFI-GR--KTCPYCRKF--SGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHIT 98 (122)
T ss_pred CcEEEEE-EC--CCChhHHHH--hHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEe
Confidence 3356666 88 999999999 9999999976321 22 2455699999999
Q ss_pred ccceeh
Q 021221 237 QFTWRR 242 (316)
Q Consensus 237 ~~~~~~ 242 (316)
+|..+.
T Consensus 99 ~Gk~v~ 104 (122)
T TIGR01295 99 DGKQVS 104 (122)
T ss_pred CCeEEE
Confidence 997543
No 261
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=95.69 E-value=0.0022 Score=48.75 Aligned_cols=47 Identities=21% Similarity=0.102 Sum_probs=40.4
Q ss_pred cCCCccccccCCcccCChhhhhchHHHHHHHHHHH----------------HHHhHHh--hhhhHhHhhc
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYI--FLPTLLIFAQ 237 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~----------------~~~~~i~--~~Ptl~~~~~ 237 (316)
..+++.| ++ +||++|+.+ .|.+..+|..|. ...+++. ++|++.++..
T Consensus 13 ~~~~~~f-~~--~~~~~~~~~--~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~ 77 (103)
T cd02982 13 KPLLVLF-YN--KDDSESEEL--RERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINL 77 (103)
T ss_pred CCEEEEE-Ec--CChhhHHHH--HHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEec
Confidence 3456667 88 999999999 999999999983 3788998 9999999988
No 262
>PRK10638 glutaredoxin 3; Provisional
Probab=95.68 E-value=0.011 Score=43.43 Aligned_cols=55 Identities=11% Similarity=0.292 Sum_probs=36.4
Q ss_pred EEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCC----hhhHhhcCCCccceEEEEeCce
Q 021221 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIR----PSILSKYGVHGFPTLFLLNSSM 146 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~----~~l~~~~~I~~~Pti~l~~g~~ 146 (316)
++.|..+||++|++....+++..-.| ...+.+.+ .++.+..|...+|++++ +|+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~gi~y------~~~dv~~~~~~~~~l~~~~g~~~vP~i~~-~g~~ 62 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKGVSF------QEIPIDGDAAKREEMIKRSGRTTVPQIFI-DAQH 62 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCCc------EEEECCCCHHHHHHHHHHhCCCCcCEEEE-CCEE
Confidence 56788999999999999988743222 22233333 34556668889998843 6643
No 263
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.65 E-value=0.0029 Score=45.82 Aligned_cols=43 Identities=5% Similarity=-0.087 Sum_probs=35.9
Q ss_pred ccccccCCcccCChhhhhchHHHHHHHHHHH-------------HHHhHHhhhhhHhHhhccc
Q 021221 190 TEEESCPFSWARSPENLLQQETYLALATAFV-------------LLRLVYIFLPTLLIFAQFT 239 (316)
Q Consensus 190 v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~-------------~~~~~i~~~Ptl~~~~~~~ 239 (316)
+.| |+ +||++|+.+ .|.+.+++..+- ..++++.+.||+.+ +|.
T Consensus 3 i~~-~a--~~C~~C~~~--~~~~~~~~~e~~~~~~~~~v~~~~~a~~~~v~~vPti~i--~G~ 58 (76)
T TIGR00412 3 IQI-YG--TGCANCQMT--EKNVKKAVEELGIDAEFEKVTDMNEILEAGVTATPGVAV--DGE 58 (76)
T ss_pred EEE-EC--CCCcCHHHH--HHHHHHHHHHcCCCeEEEEeCCHHHHHHcCCCcCCEEEE--CCE
Confidence 456 88 999999999 999999988752 37889999999988 665
No 264
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.58 E-value=0.11 Score=51.45 Aligned_cols=138 Identities=10% Similarity=0.078 Sum_probs=84.6
Q ss_pred CCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEE-eCc-eeEEEeCCCCHHH
Q 021221 81 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSS-MRVRYHGSRTLDS 158 (316)
Q Consensus 81 ~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g~-~~~~~~G~~~~~~ 158 (316)
.++|-+.++.+-|..|..+...++++++.-+. ..+...+.+ ....|++.+. +|+ .-.+|.|--.=.+
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~k-i~~~~~~~~----------~~~~p~~~~~~~~~~~~i~f~g~P~g~E 86 (515)
T TIGR03140 18 ENPVTLVLSAGSHEKSKELLELLDEIASLSDK-ISLTQNTAD----------TLRKPSFTILRDGADTGIRFAGIPGGHE 86 (515)
T ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHhCCC-eEEEEecCC----------cCCCCeEEEecCCcccceEEEecCCcHH
Confidence 45555555555799999999999999987544 333332211 1346999888 544 4589999777777
Q ss_pred HHHHHHHhhC---CCCCCCcccccccCc-cccCCCccccccCCcccCChhhhhchHHHHHHHHHH---------------
Q 021221 159 LVAFYSDVTA---SLDKISPDKVGKASN-HEKHNNTEEESCPFSWARSPENLLQQETYLALATAF--------------- 219 (316)
Q Consensus 159 l~~fi~~~~~---~~~~~~~~~~~~~~~-~~~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f--------------- 219 (316)
+..||..... +....+ ++..+... .++...+..+.. |-|.+|... ......+|..-
T Consensus 87 f~s~i~~i~~~~~~~~~l~-~~~~~~~~~~~~~~~i~~f~~--~~Cp~Cp~~--v~~~~~~a~~~p~i~~~~id~~~~~~ 161 (515)
T TIGR03140 87 FTSLVLAILQVGGHGPKLD-EGIIDRIRRLNGPLHFETYVS--LTCQNCPDV--VQALNQMALLNPNISHTMIDGALFQD 161 (515)
T ss_pred HHHHHHHHHHhcCCCCCCC-HHHHHHHHhcCCCeEEEEEEe--CCCCCCHHH--HHHHHHHHHhCCCceEEEEEchhCHH
Confidence 7777777654 322222 12111111 122222222255 889999887 55666666552
Q ss_pred HHHHhHHhhhhhHhH
Q 021221 220 VLLRLVYIFLPTLLI 234 (316)
Q Consensus 220 ~~~~~~i~~~Ptl~~ 234 (316)
...+|+|.+.|++..
T Consensus 162 ~~~~~~v~~VP~~~i 176 (515)
T TIGR03140 162 EVEALGIQGVPAVFL 176 (515)
T ss_pred HHHhcCCcccCEEEE
Confidence 238899999999854
No 265
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=95.51 E-value=0.14 Score=45.17 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=48.0
Q ss_pred CCCcceEEeCCc-ccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCc
Q 021221 55 FQDIVGVIEGDE-VSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIP 114 (316)
Q Consensus 55 ~~~~v~~l~~~~-~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~ 114 (316)
.+.+|..++|.+ .++-+. .+.++|.+|.|.+-.||+=..-.+.|++++++|.++.
T Consensus 80 Pns~vv~l~g~~~~~ildf-----~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~a 135 (237)
T PF00837_consen 80 PNSPVVTLDGQRSCRILDF-----AKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVA 135 (237)
T ss_pred CCCceEeeCCCcceeHHHh-----ccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhh
Confidence 377888889888 777776 4689999999999999999999999999999998743
No 266
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=95.49 E-value=0.0026 Score=50.47 Aligned_cols=48 Identities=21% Similarity=0.169 Sum_probs=34.6
Q ss_pred cCCCccccccCCcccCChhhhhchHHHH---HHHHH----H-------------------------HHHHhHHhhhhhHh
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYL---ALATA----F-------------------------VLLRLVYIFLPTLL 233 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~---~lA~~----f-------------------------~~~~~~i~~~Ptl~ 233 (316)
+.+++.| ++ +||++|+.+ .+.+. .+... | +..+|+|.++||+.
T Consensus 15 k~vlv~f-~a--~wC~~C~~~--~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~ 89 (125)
T cd02951 15 KPLLLLF-SQ--PGCPYCDKL--KRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVI 89 (125)
T ss_pred CcEEEEE-eC--CCCHHHHHH--HHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEE
Confidence 4577888 99 999999998 65542 22221 1 23678889999999
Q ss_pred Hhhcc
Q 021221 234 IFAQF 238 (316)
Q Consensus 234 ~~~~~ 238 (316)
+|.++
T Consensus 90 ~~~~~ 94 (125)
T cd02951 90 FLDPE 94 (125)
T ss_pred EEcCC
Confidence 99875
No 267
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=95.35 E-value=0.088 Score=39.94 Aligned_cols=86 Identities=19% Similarity=0.188 Sum_probs=66.2
Q ss_pred cCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCC--ChhhHhhcCCC----ccceEE-EE-eCceeEEE
Q 021221 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAI--RPSILSKYGVH----GFPTLF-LL-NSSMRVRY 150 (316)
Q Consensus 79 ~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~--~~~l~~~~~I~----~~Pti~-l~-~g~~~~~~ 150 (316)
.....|+|.|..+-- .-......+.++|+...|.-.+..+||.. ...||+++.|. --|..+ -| +|.--..|
T Consensus 17 RTr~NVLvLy~ks~k-~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHYKdG~fHkdY 95 (112)
T cd03067 17 RTRNNVLVLYSKSAK-SAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHYKDGDFHTEY 95 (112)
T ss_pred hhcCcEEEEEecchh-hHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhcccCCCccccc
Confidence 345667777776643 33444558899999999988888888875 67899999998 555443 44 88888899
Q ss_pred eCCCCHHHHHHHHHH
Q 021221 151 HGSRTLDSLVAFYSD 165 (316)
Q Consensus 151 ~G~~~~~~l~~fi~~ 165 (316)
.-..+..+++.|+.+
T Consensus 96 dR~~t~kSmv~FlrD 110 (112)
T cd03067 96 NRQLTFKSMVAFLRD 110 (112)
T ss_pred cchhhHHHHHHHhhC
Confidence 999999999999875
No 268
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=95.31 E-value=0.0084 Score=44.86 Aligned_cols=51 Identities=25% Similarity=0.430 Sum_probs=32.1
Q ss_pred CCChHHHhhhHHHHHHHHHcCCCcEEEEEe-CCCChhhHhhcCCCccceEEEEeCc
Q 021221 91 SWCPFSRNFRPSFSVLSSLYSSIPHFAIEE-SAIRPSILSKYGVHGFPTLFLLNSS 145 (316)
Q Consensus 91 ~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~-~~~~~~l~~~~~I~~~Pti~l~~g~ 145 (316)
||||+|++....+++..-.| ..+.+.. .+....+.+..|-..+|+++ ++|+
T Consensus 21 ~~Cp~C~~ak~~L~~~~i~y---~~idv~~~~~~~~~l~~~~g~~tvP~vf-i~g~ 72 (90)
T cd03028 21 PRCGFSRKVVQILNQLGVDF---GTFDILEDEEVRQGLKEYSNWPTFPQLY-VNGE 72 (90)
T ss_pred CCCcHHHHHHHHHHHcCCCe---EEEEcCCCHHHHHHHHHHhCCCCCCEEE-ECCE
Confidence 79999999999988764222 2222221 11123455666888999984 4764
No 269
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=95.23 E-value=0.24 Score=37.73 Aligned_cols=80 Identities=11% Similarity=0.140 Sum_probs=57.3
Q ss_pred CCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEE-e-CceeEEE-eCCCCH
Q 021221 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-N-SSMRVRY-HGSRTL 156 (316)
Q Consensus 80 ~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~-g~~~~~~-~G~~~~ 156 (316)
.+..++|-|+..--+ .....|.++|+.+.+...+.+.. +.++...+++. .|+++++ + +.....| .|..+.
T Consensus 18 ~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~e~~~~y~~g~~~~ 90 (102)
T cd03066 18 EDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEVDFYEPFMEEPVTIPDKPYSE 90 (102)
T ss_pred cCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcEEEeCCCCCCCcccCCCCCCH
Confidence 456667777765433 35567889999886655665543 35677888775 7999999 4 4555678 778899
Q ss_pred HHHHHHHHHh
Q 021221 157 DSLVAFYSDV 166 (316)
Q Consensus 157 ~~l~~fi~~~ 166 (316)
+.|.+||...
T Consensus 91 ~~l~~fi~~~ 100 (102)
T cd03066 91 EELVDFVEEH 100 (102)
T ss_pred HHHHHHHHHh
Confidence 9999999864
No 270
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=95.02 E-value=0.0091 Score=45.44 Aligned_cols=51 Identities=18% Similarity=0.256 Sum_probs=31.5
Q ss_pred CCChHHHhhhHHHHHHHHHcCCCcEEEEEeC-CCChhhHhhcCCCccceEEEEeCc
Q 021221 91 SWCPFSRNFRPSFSVLSSLYSSIPHFAIEES-AIRPSILSKYGVHGFPTLFLLNSS 145 (316)
Q Consensus 91 ~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~-~~~~~l~~~~~I~~~Pti~l~~g~ 145 (316)
||||+|++....|++..-.| ..+.+.+. +....+.+..|-..+|.+++ +|+
T Consensus 25 ~~Cp~C~~ak~lL~~~~i~~---~~~di~~~~~~~~~l~~~tg~~tvP~vfi-~g~ 76 (97)
T TIGR00365 25 PQCGFSARAVQILKACGVPF---AYVNVLEDPEIRQGIKEYSNWPTIPQLYV-KGE 76 (97)
T ss_pred CCCchHHHHHHHHHHcCCCE---EEEECCCCHHHHHHHHHHhCCCCCCEEEE-CCE
Confidence 99999999999988754322 22222211 11224555667788999854 664
No 271
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=94.85 E-value=0.31 Score=37.32 Aligned_cols=80 Identities=16% Similarity=0.240 Sum_probs=57.2
Q ss_pred cCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEEe--------CceeEEE
Q 021221 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLN--------SSMRVRY 150 (316)
Q Consensus 79 ~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~~--------g~~~~~~ 150 (316)
..++.++|-|+..--. .....|.++|+.+.+...++... ...+...+++ .|++++|. ......|
T Consensus 16 ~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~~p~~~~~k~de~~~~y 87 (104)
T cd03069 16 SDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLFRPPRLSNKFEDSSVKF 87 (104)
T ss_pred ccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEEechhhhcccCcccccc
Confidence 3566777777766433 46678889999986555565543 3567888998 78888882 1334568
Q ss_pred eCCCCHHHHHHHHHHh
Q 021221 151 HGSRTLDSLVAFYSDV 166 (316)
Q Consensus 151 ~G~~~~~~l~~fi~~~ 166 (316)
.|..+.++|.+||..+
T Consensus 88 ~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 88 DGDLDSSKIKKFIREN 103 (104)
T ss_pred cCcCCHHHHHHHHHhh
Confidence 9988999999999865
No 272
>PRK10824 glutaredoxin-4; Provisional
Probab=94.57 E-value=0.068 Score=41.97 Aligned_cols=52 Identities=19% Similarity=0.334 Sum_probs=31.1
Q ss_pred CCChHHHhhhHHHHHHHHHcCCCcEEEEEeCC-CChhhHhhcCCCccceEEEEeCce
Q 021221 91 SWCPFSRNFRPSFSVLSSLYSSIPHFAIEESA-IRPSILSKYGVHGFPTLFLLNSSM 146 (316)
Q Consensus 91 ~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~-~~~~l~~~~~I~~~Pti~l~~g~~ 146 (316)
||||+|++....|+.+.-.| ..+.+++.. ....+.+.-|-..+|.+++ +|+-
T Consensus 28 p~Cpyc~~ak~lL~~~~i~~---~~idi~~d~~~~~~l~~~sg~~TVPQIFI-~G~~ 80 (115)
T PRK10824 28 PSCGFSAQAVQALSACGERF---AYVDILQNPDIRAELPKYANWPTFPQLWV-DGEL 80 (115)
T ss_pred CCCchHHHHHHHHHHcCCCc---eEEEecCCHHHHHHHHHHhCCCCCCeEEE-CCEE
Confidence 69999999999988874333 234443221 1123444446667777765 6643
No 273
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=94.43 E-value=0.14 Score=44.12 Aligned_cols=85 Identities=13% Similarity=0.234 Sum_probs=64.7
Q ss_pred CCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEE-eCceeEEEe-------
Q 021221 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYH------- 151 (316)
Q Consensus 80 ~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g~~~~~~~------- 151 (316)
+...++|..|-+--+-|..+...+.=||..|+-+.+..+-. .+-....+|...++||+.+| +|+.+..|.
T Consensus 158 ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckiks--s~~gas~~F~~n~lP~LliYkgGeLIgNFv~va~qlg 235 (273)
T KOG3171|consen 158 KSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKS--SNTGASDRFSLNVLPTLLIYKGGELIGNFVSVAEQLG 235 (273)
T ss_pred ceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeee--ccccchhhhcccCCceEEEeeCCchhHHHHHHHHHHh
Confidence 45678899999999999999999999999999866665543 34557788999999999999 555443332
Q ss_pred CCCCHHHHHHHHHHh
Q 021221 152 GSRTLDSLVAFYSDV 166 (316)
Q Consensus 152 G~~~~~~l~~fi~~~ 166 (316)
......++..|++..
T Consensus 236 edffa~dle~FL~e~ 250 (273)
T KOG3171|consen 236 EDFFAGDLESFLNEY 250 (273)
T ss_pred hhhhhhhHHHHHHHc
Confidence 234556777777764
No 274
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.34 Score=42.89 Aligned_cols=38 Identities=26% Similarity=0.409 Sum_probs=30.2
Q ss_pred hhHhhcCCCccceEEEEeCceeEEEeCCCCHHHHHHHHHHhh
Q 021221 126 SILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSDVT 167 (316)
Q Consensus 126 ~l~~~~~I~~~Pti~l~~g~~~~~~~G~~~~~~l~~fi~~~~ 167 (316)
.++.++||.++||+++-++ .+.|..+.++|.+.|....
T Consensus 206 ~~a~~~gv~gTPt~~v~~~----~~~g~~~~~~l~~~i~~~~ 243 (244)
T COG1651 206 KLAQQLGVNGTPTFIVNGK----LVPGLPDLDELKAIIDEAL 243 (244)
T ss_pred HHHHhcCCCcCCeEEECCe----eecCCCCHHHHHHHHHHhh
Confidence 4567789999999988533 7788888999999887653
No 275
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.13 Score=39.64 Aligned_cols=57 Identities=19% Similarity=0.359 Sum_probs=35.7
Q ss_pred EEEEEcCCChHHHhhhHHHHHHHHHcC-CCcEEEEEeCCCChhhHh----hcCCCccceEEEEeCce
Q 021221 85 AVLFYASWCPFSRNFRPSFSVLSSLYS-SIPHFAIEESAIRPSILS----KYGVHGFPTLFLLNSSM 146 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~la~~~~-~~~~v~~~~~~~~~~l~~----~~~I~~~Pti~l~~g~~ 146 (316)
+|.|..+||++|+++...|.+ +. ....+..|+.+...++-+ --|-+.+|.+++ +|+-
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI-~Gk~ 77 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI-GGKF 77 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE-CCEE
Confidence 678999999999998877777 22 234444444333333333 234567888765 5543
No 276
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=93.99 E-value=0.024 Score=56.98 Aligned_cols=49 Identities=20% Similarity=0.257 Sum_probs=35.7
Q ss_pred cCCCccccccCCcccCChhhhhchHHH---HHHHHHH-------------------HHHHhHHhhhhhHhHhh-ccc
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETY---LALATAF-------------------VLLRLVYIFLPTLLIFA-QFT 239 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~---~~lA~~f-------------------~~~~~~i~~~Ptl~~~~-~~~ 239 (316)
+.++++| ++ +||.+|+.+ ++.. .++...+ +..++++.++||+.+|. +|.
T Consensus 475 K~VlVdF-~A--~WC~~Ck~~--e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~ 546 (571)
T PRK00293 475 KPVMLDL-YA--DWCVACKEF--EKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQ 546 (571)
T ss_pred CcEEEEE-EC--CcCHhHHHH--HHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCC
Confidence 3478889 99 999999998 6543 3333332 12679999999999996 455
No 277
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=93.70 E-value=0.065 Score=51.63 Aligned_cols=54 Identities=15% Similarity=0.278 Sum_probs=35.3
Q ss_pred EEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCCh---hhHh---------hcCCCccceEEEEeCc
Q 021221 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRP---SILS---------KYGVHGFPTLFLLNSS 145 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~---~l~~---------~~~I~~~Pti~l~~g~ 145 (316)
++.|..+|||+|++....+++. ++..- ..+.++.+ ++.+ +.|.+++|++++ +|+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~-~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi-~~~ 69 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFT-QISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV-GDV 69 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCeE-EEECCCChhHHHHHHHHhhccccccCCCCccCeEEE-CCE
Confidence 7889999999999999888874 33222 22333333 2222 247889999965 654
No 278
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=93.57 E-value=0.019 Score=39.92 Aligned_cols=37 Identities=8% Similarity=-0.011 Sum_probs=28.9
Q ss_pred ccCCcccCChhhhhchHHHHHHHHHH---------------HHHHhHHhhhhhHhH
Q 021221 194 SCPFSWARSPENLLQQETYLALATAF---------------VLLRLVYIFLPTLLI 234 (316)
Q Consensus 194 ~~~~pw~~~~~~~l~~~~~~~lA~~f---------------~~~~~~i~~~Ptl~~ 234 (316)
++ +||++|+.+ .+.+..++..+ +..++++.+.||+.+
T Consensus 7 ~~--~~C~~C~~~--~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 7 VS--PTCPYCPDA--VQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EC--CCCCCcHHH--HHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 67 999999999 89998887654 126778888888743
No 279
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=93.42 E-value=0.054 Score=44.83 Aligned_cols=32 Identities=9% Similarity=-0.065 Sum_probs=26.5
Q ss_pred ccccCCCccccccCCcccCChhhhhchHHHHHHHHHH
Q 021221 183 NHEKHNNTEEESCPFSWARSPENLLQQETYLALATAF 219 (316)
Q Consensus 183 ~~~~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f 219 (316)
..+...++.| ++ +||++|++. .|...+++..|
T Consensus 48 ~l~~~~lvnF-WA--sWCppCr~e--~P~L~~l~~~~ 79 (153)
T TIGR02738 48 NQDDYALVFF-YQ--STCPYCHQF--APVLKRFSQQF 79 (153)
T ss_pred hcCCCEEEEE-EC--CCChhHHHH--HHHHHHHHHHc
Confidence 3345567888 99 999999999 99999998776
No 280
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=92.80 E-value=0.84 Score=39.68 Aligned_cols=79 Identities=16% Similarity=0.182 Sum_probs=52.9
Q ss_pred CcceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChH-HHhhhHHHHHHHHHcC-C------CcEEEEEeCCCChhhH
Q 021221 57 DIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPF-SRNFRPSFSVLSSLYS-S------IPHFAIEESAIRPSIL 128 (316)
Q Consensus 57 ~~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~-Ck~~~p~~~~la~~~~-~------~~~v~~~~~~~~~~l~ 128 (316)
..+..-+|+.+++.++ .+++++|.|.=+.||. |-.+...+..+.++.. . ++.|.+|-....++..
T Consensus 50 f~l~d~~G~~~~~~~l-------~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~l 122 (207)
T COG1999 50 FELTDQDGKPFTLKDL-------KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVL 122 (207)
T ss_pred eeeecCCCCEeecccc-------CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHH
Confidence 3444556777655555 8899999999888985 9988888888877765 2 2344444333457788
Q ss_pred hhcCC-CccceEEEE
Q 021221 129 SKYGV-HGFPTLFLL 142 (316)
Q Consensus 129 ~~~~I-~~~Pti~l~ 142 (316)
++|.. .-.|-+...
T Consensus 123 k~Y~~~~~~~~~~~l 137 (207)
T COG1999 123 KKYAELNFDPRWIGL 137 (207)
T ss_pred HHHhcccCCCCeeee
Confidence 88887 444544443
No 281
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=92.65 E-value=1.1 Score=37.78 Aligned_cols=36 Identities=31% Similarity=0.536 Sum_probs=29.6
Q ss_pred hhHhhcCCCccceEEEEeCceeEEEeCCCCHHHHHHHHH
Q 021221 126 SILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYS 164 (316)
Q Consensus 126 ~l~~~~~I~~~Pti~l~~g~~~~~~~G~~~~~~l~~fi~ 164 (316)
..+.++||.|+||+++ +|+ ..+.|....+.|.+.|+
T Consensus 158 ~~a~~~gv~GvP~~vv-~g~--~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 158 AEARQLGVFGVPTFVV-NGK--YRFFGADRLDELEDALQ 193 (193)
T ss_dssp HHHHHTTCSSSSEEEE-TTT--EEEESCSSHHHHHHHH-
T ss_pred HHHHHcCCcccCEEEE-CCE--EEEECCCCHHHHHHHhC
Confidence 4467789999999998 776 77889999999988764
No 282
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=91.30 E-value=0.036 Score=43.82 Aligned_cols=40 Identities=18% Similarity=0.066 Sum_probs=31.8
Q ss_pred cccCChhhhhchHHHHHHHHHHHH-----------------------HHhHHh-hhhhHhHhhccc
Q 021221 198 SWARSPENLLQQETYLALATAFVL-----------------------LRLVYI-FLPTLLIFAQFT 239 (316)
Q Consensus 198 pw~~~~~~~l~~~~~~~lA~~f~~-----------------------~~~~i~-~~Ptl~~~~~~~ 239 (316)
+||++|+.+ .|.+..++..+.. .+++|. +.||+.+|..|.
T Consensus 38 ~WC~pCr~~--~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~ 101 (119)
T cd02952 38 SWCPDCVKA--EPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQ 101 (119)
T ss_pred CCCHhHHhh--chhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCc
Confidence 799999999 9999999877641 445677 899999995543
No 283
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=90.78 E-value=0.063 Score=48.74 Aligned_cols=46 Identities=9% Similarity=-0.107 Sum_probs=39.1
Q ss_pred CCCccccccCCcccCChhhhhchHHHHHHHHHHH-------------------------HHHhHHhhhhhHhHhhc
Q 021221 187 HNNTEEESCPFSWARSPENLLQQETYLALATAFV-------------------------LLRLVYIFLPTLLIFAQ 237 (316)
Q Consensus 187 ~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~-------------------------~~~~~i~~~Ptl~~~~~ 237 (316)
.+++.| ++ +||+.|+.+ .|.+..++..|- ..+++|.+.||+.++.+
T Consensus 168 ~~Lv~F-~A--swCp~C~~~--~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~ 238 (271)
T TIGR02740 168 SGLFFF-FK--SDCPYCHQQ--APILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADP 238 (271)
T ss_pred eEEEEE-EC--CCCccHHHH--hHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEEC
Confidence 467777 99 999999999 999999998762 25888999999999976
No 284
>PRK09301 circadian clock protein KaiB; Provisional
Probab=90.62 E-value=1.1 Score=34.29 Aligned_cols=76 Identities=13% Similarity=0.162 Sum_probs=63.5
Q ss_pred CCCeEEEEEEcCCChHHHhhhHHHHHHHH-HcCCCcEEEEEeCCCChhhHhhcCCCccceEEEEeCceeEEEeCCCC
Q 021221 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSS-LYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRT 155 (316)
Q Consensus 80 ~~~~vlV~Fya~WC~~Ck~~~p~~~~la~-~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~~g~~~~~~~G~~~ 155 (316)
+..+++=.|.|..-+..++....+.++-+ .+++...+.++|..+++++++.++|-.+||++=....++.+..|..+
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~P~rriiGDls 80 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILPPPVRKIIGDLS 80 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCCCCcceeecccc
Confidence 44678888999999999998888888766 45667888899999999999999999999977555677788888764
No 285
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=90.60 E-value=1.2 Score=33.04 Aligned_cols=74 Identities=15% Similarity=0.164 Sum_probs=61.2
Q ss_pred CeEEEEEEcCCChHHHhhhHHHHHHHH-HcCCCcEEEEEeCCCChhhHhhcCCCccceEEEEeCceeEEEeCCCC
Q 021221 82 EYVAVLFYASWCPFSRNFRPSFSVLSS-LYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRT 155 (316)
Q Consensus 82 ~~vlV~Fya~WC~~Ck~~~p~~~~la~-~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~~g~~~~~~~G~~~ 155 (316)
.+++=.|.|.--+.+++....+.++-+ .+.+...+.++|..+++++++.++|-.+||++=....+..+..|..+
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~P~rriiGdls 77 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILPPPVRKIIGDLS 77 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCCCCcceeecccc
Confidence 466778888889999998888888766 45667888899999999999999999999987555667788888764
No 286
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=89.48 E-value=5.1 Score=32.99 Aligned_cols=49 Identities=24% Similarity=0.331 Sum_probs=38.8
Q ss_pred CCcceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC
Q 021221 56 QDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS 112 (316)
Q Consensus 56 ~~~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~ 112 (316)
+..+..++|+.+++++. .++.++|.=.|+-|+.-.+. ..++.|.+.|.+
T Consensus 7 d~~~~~~~G~~~~l~~~-------~GkVlLIVNtASkCGfTpQY-egLe~Ly~ky~~ 55 (162)
T COG0386 7 DFSVKDIDGEPVSLSDY-------KGKVLLIVNTASKCGFTPQY-EGLEALYKKYKD 55 (162)
T ss_pred cceeeccCCCCccHHHh-------CCcEEEEEEcccccCCcHhH-HHHHHHHHHHhh
Confidence 55678889999999998 89999999999999976532 355666677765
No 287
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=89.40 E-value=0.99 Score=31.56 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=34.2
Q ss_pred EEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEE
Q 021221 86 VLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFL 141 (316)
Q Consensus 86 V~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l 141 (316)
+.|+.+||++|++.+-.+++..-.| ..+.++.....+++.+......+|++..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~---e~~~v~~~~~~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITV---ELREVELKNKPAEMLAASPKGTVPVLVL 54 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCc---EEEEeCCCCCCHHHHHHCCCCCCCEEEE
Confidence 4678999999999887777654333 2223322223356666667778999964
No 288
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=89.36 E-value=0.79 Score=31.89 Aligned_cols=58 Identities=17% Similarity=0.137 Sum_probs=35.1
Q ss_pred EEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeC-CCChhhHhhcCCCccceEEEEeC
Q 021221 86 VLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEES-AIRPSILSKYGVHGFPTLFLLNS 144 (316)
Q Consensus 86 V~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~-~~~~~l~~~~~I~~~Pti~l~~g 144 (316)
..|+.++|++|++.+-.+++..-.|.. ..+..... ...+++.+...-..+|++..-+|
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~~~-~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~ 60 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDVPL-VTVDLAAGEQRSPEFLAKNPAGTVPVLELDDG 60 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCceE-EEeecccCccCCHHHHhhCCCCCCCEEEeCCC
Confidence 467889999999999887766433322 12222111 12345566566678999975343
No 289
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=89.19 E-value=0.21 Score=37.29 Aligned_cols=41 Identities=5% Similarity=-0.039 Sum_probs=33.4
Q ss_pred cccCCcccCChhhhhchHHHHHHHHHH---------------HHHHhHHhhhhhHhHhhccc
Q 021221 193 ESCPFSWARSPENLLQQETYLALATAF---------------VLLRLVYIFLPTLLIFAQFT 239 (316)
Q Consensus 193 ~~~~~pw~~~~~~~l~~~~~~~lA~~f---------------~~~~~~i~~~Ptl~~~~~~~ 239 (316)
+.+ |||..|..+ .+.+..++..+ ...+|+|.+.||+.. +|.
T Consensus 19 F~~--~~C~~C~~~--~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~ 74 (89)
T cd03026 19 YVS--LSCHNCPDV--VQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGE 74 (89)
T ss_pred EEC--CCCCCcHHH--HHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCE
Confidence 377 999999999 88999998876 238999999999953 554
No 290
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=89.07 E-value=2.8 Score=29.62 Aligned_cols=72 Identities=14% Similarity=0.237 Sum_probs=48.8
Q ss_pred EEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEEeCceeEEEeCCCCHHHHHHHHHHh
Q 021221 87 LFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSDV 166 (316)
Q Consensus 87 ~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~~g~~~~~~~G~~~~~~l~~fi~~~ 166 (316)
.|+.++|++|++..=.++...=.| ....+...+....+.+...-..+|++. .+|..+ .+...|.+++++.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~---~~~~v~~~~~~~~~~~~~p~~~vPvL~-~~g~~l------~dS~~I~~yL~~~ 70 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPY---ELVPVDPEEKRPEFLKLNPKGKVPVLV-DDGEVL------TDSAAIIEYLEER 70 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEE---EEEEEBTTSTSHHHHHHSTTSBSSEEE-ETTEEE------ESHHHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCCeE---EEeccCcccchhHHHhhcccccceEEE-ECCEEE------eCHHHHHHHHHHH
Confidence 478899999999887666543222 223333233346677777778899998 565432 2788899999988
Q ss_pred hC
Q 021221 167 TA 168 (316)
Q Consensus 167 ~~ 168 (316)
.+
T Consensus 71 ~~ 72 (75)
T PF13417_consen 71 YP 72 (75)
T ss_dssp ST
T ss_pred cC
Confidence 76
No 291
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=88.79 E-value=2.3 Score=30.36 Aligned_cols=66 Identities=17% Similarity=0.160 Sum_probs=50.1
Q ss_pred EEEEEEcCCChHHHhhhHHHHHHHHHc-CCCcEEEEEeCCCChhhHhhcCCCccceEEEEeCceeEE
Q 021221 84 VAVLFYASWCPFSRNFRPSFSVLSSLY-SSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVR 149 (316)
Q Consensus 84 vlV~Fya~WC~~Ck~~~p~~~~la~~~-~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~~g~~~~~ 149 (316)
.+..|-+..-+.+++....+.++-+.+ ++...+.++|..+++++++.++|-.+||++=.....+.+
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~~P~P~rr 69 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKVLPPPRRR 69 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhcCCCCceE
Confidence 455666666688888888888777765 557888899999999999999999999987443333333
No 292
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=88.70 E-value=5.5 Score=28.04 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=43.3
Q ss_pred EEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEEe-CceeEEEeCCCCHHHHHHHH
Q 021221 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLN-SSMRVRYHGSRTLDSLVAFY 163 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~~-g~~~~~~~G~~~~~~l~~fi 163 (316)
+..|+.+.|+.|++.+-.+.+..-.|. .+.+ +.....++ +.-+-..+|++..=+ |.... -.+...|.+++
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~y~---~~~~-~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~----l~eS~~I~~yL 72 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIPYE---VVEV-NPVSRKEI-KWSSYKKVPILRVESGGDGQQ----LVDSSVIISTL 72 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCceE---EEEC-CchhHHHH-HHhCCCccCEEEECCCCCccE----EEcHHHHHHHH
Confidence 456888999999999977765432221 1111 11111233 334556799887531 11111 12677889999
Q ss_pred HHhhC
Q 021221 164 SDVTA 168 (316)
Q Consensus 164 ~~~~~ 168 (316)
++.+|
T Consensus 73 ~~~~~ 77 (77)
T cd03040 73 KTYLG 77 (77)
T ss_pred HHHcC
Confidence 88765
No 293
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=88.61 E-value=3.1 Score=33.60 Aligned_cols=74 Identities=9% Similarity=0.190 Sum_probs=52.0
Q ss_pred EEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCC----ccceEEEEeCceeEEEeCCCCHHHH
Q 021221 84 VAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVH----GFPTLFLLNSSMRVRYHGSRTLDSL 159 (316)
Q Consensus 84 vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~----~~Pti~l~~g~~~~~~~G~~~~~~l 159 (316)
-++.|+.|.|+-|..-...++. + + ..+.....+....+.+++||. +-=|.+ ++| ....|....+.|
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~--~---G-f~Vk~~~~~d~~alK~~~gIp~e~~SCHT~V-I~G---y~vEGHVPa~aI 96 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKA--N---G-FEVKVVETDDFLALKRRLGIPYEMQSCHTAV-ING---YYVEGHVPAEAI 96 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHh--C---C-cEEEEeecCcHHHHHHhcCCChhhccccEEE-EcC---EEEeccCCHHHH
Confidence 4788999999999987776662 1 2 345555555667788888875 333433 366 344688899999
Q ss_pred HHHHHHhh
Q 021221 160 VAFYSDVT 167 (316)
Q Consensus 160 ~~fi~~~~ 167 (316)
..++++.-
T Consensus 97 ~~ll~~~p 104 (149)
T COG3019 97 ARLLAEKP 104 (149)
T ss_pred HHHHhCCC
Confidence 99998765
No 294
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=87.87 E-value=1.8 Score=43.82 Aligned_cols=73 Identities=16% Similarity=0.276 Sum_probs=51.3
Q ss_pred HHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHH-H--HHHHHHcCC-CcEEEEEeCCCChhhHhhcC--------CCcc
Q 021221 69 LQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPS-F--SVLSSLYSS-IPHFAIEESAIRPSILSKYG--------VHGF 136 (316)
Q Consensus 69 ~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~-~--~~la~~~~~-~~~v~~~~~~~~~~l~~~~~--------I~~~ 136 (316)
|+++ ...++|++|-.-.+||.-|+-|... | .++|+..+. .+-|.+ |-++.|++-+.|. --|.
T Consensus 36 f~~A-----~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKV-DREERPDvD~~Ym~~~q~~tG~GGW 109 (667)
T COG1331 36 FAKA-----KEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKV-DREERPDVDSLYMNASQAITGQGGW 109 (667)
T ss_pred HHHH-----HHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeE-ChhhccCHHHHHHHHHHHhccCCCC
Confidence 5555 5689999999999999999999643 2 345544433 444554 5567777766663 4579
Q ss_pred ceEEEE--eCcee
Q 021221 137 PTLFLL--NSSMR 147 (316)
Q Consensus 137 Pti~l~--~g~~~ 147 (316)
|-.+|. +|++.
T Consensus 110 PLtVfLTPd~kPF 122 (667)
T COG1331 110 PLTVFLTPDGKPF 122 (667)
T ss_pred ceeEEECCCCcee
Confidence 999988 77664
No 295
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=87.77 E-value=8.9 Score=28.84 Aligned_cols=74 Identities=9% Similarity=0.073 Sum_probs=49.1
Q ss_pred CCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEE-eC-ceeEEEeCCCCHH
Q 021221 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NS-SMRVRYHGSRTLD 157 (316)
Q Consensus 80 ~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~g-~~~~~~~G~~~~~ 157 (316)
.+...++.|..+. ..|+.+...++++++.-+. ..+...+.+ ...|++.+. +| ..-++|.|--.=.
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdk-I~~~~~~~~-----------~~~P~~~i~~~~~~~gIrF~GiP~Gh 84 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLSDK-ITLEEDNDD-----------ERKPSFSINRPGEDTGIRFAGIPMGH 84 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCCc-eEEEEecCC-----------CCCCEEEEecCCCcccEEEEecCCch
Confidence 3344455666655 9999999999999887543 223222211 147999998 44 2348999987778
Q ss_pred HHHHHHHHh
Q 021221 158 SLVAFYSDV 166 (316)
Q Consensus 158 ~l~~fi~~~ 166 (316)
++..||...
T Consensus 85 Ef~Slilai 93 (94)
T cd02974 85 EFTSLVLAL 93 (94)
T ss_pred hHHHHHHHh
Confidence 888887653
No 296
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=87.03 E-value=9.7 Score=34.09 Aligned_cols=102 Identities=16% Similarity=0.191 Sum_probs=57.9
Q ss_pred ceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChH-HHhhhHHHHHHHHHcC---C---C-cEEEEEeCCCC------
Q 021221 59 VGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPF-SRNFRPSFSVLSSLYS---S---I-PHFAIEESAIR------ 124 (316)
Q Consensus 59 v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~-Ck~~~p~~~~la~~~~---~---~-~~v~~~~~~~~------ 124 (316)
+...+|+.++=+++ .++.++++|.=+.||. |-.....+-.+.+... + + ++|.+ |.+.+
T Consensus 124 L~d~~Gk~~te~df-------~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsv-DPeRD~~~~~~ 195 (280)
T KOG2792|consen 124 LVDHDGKRVTEKDF-------LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISV-DPERDSVEVVA 195 (280)
T ss_pred EEecCCCeeccccc-------ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEe-CcccCCHHHHH
Confidence 33445666443334 6899999999999986 6555444444333322 2 1 33333 32111
Q ss_pred --------------------hhhHhhcCCCccc-------------eEEEE--e-CceeEEEeC-CCCHHHHHHHHHHhh
Q 021221 125 --------------------PSILSKYGVHGFP-------------TLFLL--N-SSMRVRYHG-SRTLDSLVAFYSDVT 167 (316)
Q Consensus 125 --------------------~~l~~~~~I~~~P-------------ti~l~--~-g~~~~~~~G-~~~~~~l~~fi~~~~ 167 (316)
+++|+.|.|.--+ |+++| | ..+.++|.| .++.+++.+-|.++.
T Consensus 196 eY~~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v 275 (280)
T KOG2792|consen 196 EYVSEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHV 275 (280)
T ss_pred HHHHhcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHH
Confidence 2667777764222 34444 3 233444444 678999999888775
Q ss_pred C
Q 021221 168 A 168 (316)
Q Consensus 168 ~ 168 (316)
.
T Consensus 276 ~ 276 (280)
T KOG2792|consen 276 A 276 (280)
T ss_pred H
Confidence 4
No 297
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=86.19 E-value=0.45 Score=36.48 Aligned_cols=29 Identities=10% Similarity=-0.158 Sum_probs=23.3
Q ss_pred cCCCccccccCCcccCChhhhhchHHHHHHHHHH
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYLALATAF 219 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f 219 (316)
+.+++.| ++ +||++|++. .|.+..++..+
T Consensus 22 k~vvl~F-~~--~wC~~C~~~--~p~l~~~~~~~ 50 (114)
T cd02967 22 RPTLLFF-LS--PTCPVCKKL--LPVIRSIARAE 50 (114)
T ss_pred CeEEEEE-EC--CCCcchHhH--hHHHHHHHHHh
Confidence 3466777 89 999999998 78888877655
No 298
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.68 E-value=3.2 Score=39.01 Aligned_cols=84 Identities=19% Similarity=0.300 Sum_probs=64.8
Q ss_pred ccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEEeCceeEEEeCCCCHH
Q 021221 78 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLD 157 (316)
Q Consensus 78 ~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~~g~~~~~~~G~~~~~ 157 (316)
.-++.+-+=-|++-.|..|-.....++-++-..+++.+..++.. ..++-.+.-+|.++||+++ ||++.. .|..+.+
T Consensus 113 ~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa-~Fq~Evear~IMaVPtvfl-nGe~fg--~GRmtle 188 (520)
T COG3634 113 AIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGA-LFQDEVEARNIMAVPTVFL-NGEEFG--QGRMTLE 188 (520)
T ss_pred hcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecch-hhHhHHHhccceecceEEE-cchhhc--ccceeHH
Confidence 34677888889999999999999999988888889999998654 3444555669999999876 665422 5677888
Q ss_pred HHHHHHHH
Q 021221 158 SLVAFYSD 165 (316)
Q Consensus 158 ~l~~fi~~ 165 (316)
+|..-|..
T Consensus 189 eilaki~~ 196 (520)
T COG3634 189 EILAKIDT 196 (520)
T ss_pred HHHHHhcC
Confidence 88777765
No 299
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=85.52 E-value=0.19 Score=39.26 Aligned_cols=28 Identities=18% Similarity=-0.006 Sum_probs=21.0
Q ss_pred cCCCccccccCCcccCChhhhhchHHHHHHHHH
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYLALATA 218 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~ 218 (316)
+.+++.| ++ +||.+|..+ .|.+..++..
T Consensus 21 k~~vl~F-~~--~~C~~C~~~--~~~l~~~~~~ 48 (123)
T cd03011 21 KPVLVYF-WA--TWCPVCRFT--SPTVNQLAAD 48 (123)
T ss_pred CEEEEEE-EC--CcChhhhhh--ChHHHHHHhh
Confidence 3466777 88 999999998 7777665544
No 300
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=85.16 E-value=3.8 Score=31.95 Aligned_cols=42 Identities=19% Similarity=0.564 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHcCCC---cEEEEEeCCCChhhHhhcCCCccceEEEEeC
Q 021221 98 NFRPSFSVLSSLYSSI---PHFAIEESAIRPSILSKYGVHGFPTLFLLNS 144 (316)
Q Consensus 98 ~~~p~~~~la~~~~~~---~~v~~~~~~~~~~l~~~~~I~~~Pti~l~~g 144 (316)
.+.+..+.+.+..... ..+.+ ++.+.++|+|+.+||+++-++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~~~v~I-----dP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPCPGVQI-----DPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCCcceeE-----ChhHHhhCCceEcCEEEEEcC
Confidence 5566666555544332 23333 588999999999999999855
No 301
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=85.13 E-value=23 Score=33.26 Aligned_cols=102 Identities=15% Similarity=0.149 Sum_probs=60.7
Q ss_pred CCcceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC-CcEEEEEeCCCChhhHhhcCCC
Q 021221 56 QDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESAIRPSILSKYGVH 134 (316)
Q Consensus 56 ~~~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~-~~~v~~~~~~~~~~l~~~~~I~ 134 (316)
..||.+++++. =.++|+.+ .+.+-+|-|+-+--+. -...|+++|..|.. +.++++. ++.++++.+.+
T Consensus 145 edPVeiIn~~~--e~~~Fe~i---ed~~klIGyFk~~~s~---~yk~FeeAAe~F~p~IkFfAtf----d~~vAk~L~lK 212 (383)
T PF01216_consen 145 EDPVEIINNKH--ELKAFERI---EDDIKLIGYFKSEDSE---HYKEFEEAAEHFQPYIKFFATF----DKKVAKKLGLK 212 (383)
T ss_dssp SSSEEEE-SHH--HHHHHHH-----SS-EEEEE-SSTTSH---HHHHHHHHHHHCTTTSEEEEE-----SHHHHHHHT-S
T ss_pred ccchhhhcChh--hhhhhhhc---ccceeEEEEeCCCCcH---HHHHHHHHHHhhcCceeEEEEe----cchhhhhcCcc
Confidence 56788888766 23333333 4457778777664332 23467889999976 5566654 47799999997
Q ss_pred ccceEEEE---eCceeEEEeCCCCHHHHHHHHHHhhCCC
Q 021221 135 GFPTLFLL---NSSMRVRYHGSRTLDSLVAFYSDVTASL 170 (316)
Q Consensus 135 ~~Pti~l~---~g~~~~~~~G~~~~~~l~~fi~~~~~~~ 170 (316)
.=.+-+| -..++..-..+.+.++|++||+++-.+.
T Consensus 213 -~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rpt 250 (383)
T PF01216_consen 213 -LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRPT 250 (383)
T ss_dssp -TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-S
T ss_pred -ccceeeeccccCCCccCCCCCCCHHHHHHHHHHhchhH
Confidence 7777777 2344444344678999999999998754
No 302
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=84.05 E-value=1.1 Score=37.70 Aligned_cols=49 Identities=20% Similarity=0.279 Sum_probs=34.9
Q ss_pred CCcceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCCh-HHHhhhHHHHHHHHHcC
Q 021221 56 QDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCP-FSRNFRPSFSVLSSLYS 111 (316)
Q Consensus 56 ~~~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~-~Ck~~~p~~~~la~~~~ 111 (316)
+......+|+.+++++. .+++++|.|.-+.|+ .|-.+...+.++.+.+.
T Consensus 34 ~f~L~d~~G~~~~~~~~-------~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~ 83 (174)
T PF02630_consen 34 DFTLTDQDGKTVTLDDL-------KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLG 83 (174)
T ss_dssp T-EEEETTSSEEEGGGG-------TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHH
T ss_pred CcEEEcCCCCEecHHHh-------CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhh
Confidence 34445556778776666 789999999999995 68888777777776543
No 303
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=83.52 E-value=0.69 Score=45.86 Aligned_cols=29 Identities=14% Similarity=-0.099 Sum_probs=23.1
Q ss_pred cCCCccccccCCcccCChhhhhchHHHHHHHHHH
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYLALATAF 219 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f 219 (316)
+.+++.| ++ +||.+|+.. .|.+.+++..+
T Consensus 57 KpVvV~F-WA--TWCppCk~e--mP~L~eL~~e~ 85 (521)
T PRK14018 57 KPTLIKF-WA--SWCPLCLSE--LGETEKWAQDA 85 (521)
T ss_pred CEEEEEE-Ec--CCCHHHHHH--HHHHHHHHHHh
Confidence 3467888 99 999999998 77877776643
No 304
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=83.03 E-value=19 Score=27.59 Aligned_cols=82 Identities=9% Similarity=0.083 Sum_probs=54.1
Q ss_pred ccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEEe--------CceeEE
Q 021221 78 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLN--------SSMRVR 149 (316)
Q Consensus 78 ~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~~--------g~~~~~ 149 (316)
...++.++|-|+..--+ .....|.++|+.+.+...+.+.. +..+..++++. .|.+++|. ......
T Consensus 16 ~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~-~~~vvl~rp~~~~~k~e~~~~~ 88 (107)
T cd03068 16 RDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVS-PGQLVVFQPEKFQSKYEPKSHV 88 (107)
T ss_pred hcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCC-CCceEEECcHHHhhhcCcceee
Confidence 33326677777766433 45677889999986655666543 35687888886 56677772 123567
Q ss_pred EeCC-CCHHH-HHHHHHHh
Q 021221 150 YHGS-RTLDS-LVAFYSDV 166 (316)
Q Consensus 150 ~~G~-~~~~~-l~~fi~~~ 166 (316)
|.|. .+.++ |.+||.++
T Consensus 89 ~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 89 LNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred eeccccchHHHHHHHHhcC
Confidence 7877 56655 99999864
No 305
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=83.00 E-value=3.4 Score=29.42 Aligned_cols=74 Identities=19% Similarity=0.187 Sum_probs=42.1
Q ss_pred EEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCC-CChhhHhhcCCCccceEEEEeCceeEEEeCCCCHHHHHHHH
Q 021221 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESA-IRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFY 163 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~-~~~~l~~~~~I~~~Pti~l~~g~~~~~~~G~~~~~~l~~fi 163 (316)
+..|+.++|++|++.+-.+++..-.|. .+.+...+ ..+++.+.-+-..+|+++.-+++.. -.+...|.+++
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~---~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~-----l~es~~I~~yL 73 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVI---LYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQ-----MFESADIVKYL 73 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEE---EEECCCChHHHHHHHHhCCCCcccEEEeCCCCeE-----EEcHHHHHHHH
Confidence 346778899999998877776533331 12221111 1234444445567999864322221 12567788888
Q ss_pred HHh
Q 021221 164 SDV 166 (316)
Q Consensus 164 ~~~ 166 (316)
++.
T Consensus 74 ~~~ 76 (77)
T cd03041 74 FKT 76 (77)
T ss_pred HHh
Confidence 764
No 306
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=82.82 E-value=0.44 Score=37.94 Aligned_cols=52 Identities=15% Similarity=-0.024 Sum_probs=32.1
Q ss_pred ccCCCccccccCCcccCChhhhhc----hHHHHH-HHHHHHH--------------------HHhHHhhhhhHhHhh-cc
Q 021221 185 EKHNNTEEESCPFSWARSPENLLQ----QETYLA-LATAFVL--------------------LRLVYIFLPTLLIFA-QF 238 (316)
Q Consensus 185 ~~~~~v~f~~~~~pw~~~~~~~l~----~~~~~~-lA~~f~~--------------------~~~~i~~~Ptl~~~~-~~ 238 (316)
++.+++.| ++ .||..|+.|-+ .|.... +...|+. ..+++.++||+.++. .|
T Consensus 15 ~KpVll~f-~a--~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G 91 (124)
T cd02955 15 DKPIFLSI-GY--STCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDL 91 (124)
T ss_pred CCeEEEEE-cc--CCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCC
Confidence 44477778 89 99999999822 122222 2223321 135778999999994 44
Q ss_pred c
Q 021221 239 T 239 (316)
Q Consensus 239 ~ 239 (316)
.
T Consensus 92 ~ 92 (124)
T cd02955 92 K 92 (124)
T ss_pred C
Confidence 4
No 307
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.46 E-value=0.17 Score=43.79 Aligned_cols=61 Identities=11% Similarity=0.114 Sum_probs=50.1
Q ss_pred ccCCCccccccCCcccCChhhhhchHHHHHHHHHHHH-----------------HHhHHh------hhhhHhHhhcccee
Q 021221 185 EKHNNTEEESCPFSWARSPENLLQQETYLALATAFVL-----------------LRLVYI------FLPTLLIFAQFTWR 241 (316)
Q Consensus 185 ~~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~~-----------------~~~~i~------~~Ptl~~~~~~~~~ 241 (316)
...|+++| ++ -|...|.+. .|.|.+|+..|.+ .||+|. ..||+.+|.+|.-+
T Consensus 144 ~t~WlIeF-fa--~ws~~Cv~~--spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ilFq~gkE~ 218 (265)
T KOG0914|consen 144 RTYWLIEF-FA--CWSPKCVRF--SPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYILFQKGKEV 218 (265)
T ss_pred ceEEEEEE-Ee--ecChhhccc--ccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEEEEccchhh
Confidence 45589999 88 899999999 9999999999954 677665 36999999999876
Q ss_pred hhhhccccc
Q 021221 242 RLIRNLKLG 250 (316)
Q Consensus 242 ~~~~~~~~~ 250 (316)
...+.++..
T Consensus 219 ~RrP~vd~~ 227 (265)
T KOG0914|consen 219 SRRPDVDVK 227 (265)
T ss_pred hcCcccccc
Confidence 666666654
No 308
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=82.45 E-value=2.9 Score=33.55 Aligned_cols=43 Identities=9% Similarity=0.223 Sum_probs=32.3
Q ss_pred ChhhHhhcCCCccceEEEEeCc------------eeEEEeCCCCHHHHHHHHHHh
Q 021221 124 RPSILSKYGVHGFPTLFLLNSS------------MRVRYHGSRTLDSLVAFYSDV 166 (316)
Q Consensus 124 ~~~l~~~~~I~~~Pti~l~~g~------------~~~~~~G~~~~~~l~~fi~~~ 166 (316)
++.+.++|+|+.+|++++.++. ......|..+.+.-.+.+.+.
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~ 114 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQD 114 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHh
Confidence 5889999999999999999433 245566777777666666644
No 309
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=81.86 E-value=9 Score=36.62 Aligned_cols=89 Identities=15% Similarity=0.131 Sum_probs=61.8
Q ss_pred cCCCeEEEEEEcCCChHHHhhhH-HH-HHHHHHc--CCCcEEEEEe-CCCChhhHhhcCCCccceEEEE--eCceeEEEe
Q 021221 79 NSHEYVAVLFYASWCPFSRNFRP-SF-SVLSSLY--SSIPHFAIEE-SAIRPSILSKYGVHGFPTLFLL--NSSMRVRYH 151 (316)
Q Consensus 79 ~~~~~vlV~Fya~WC~~Ck~~~p-~~-~~la~~~--~~~~~v~~~~-~~~~~~l~~~~~I~~~Pti~l~--~g~~~~~~~ 151 (316)
+.++.++|.|-+.-....++|.. .| +...... ...+.|.+.. .....++.+-|.+..+|.++++ +|.++....
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevit 95 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVIT 95 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEee
Confidence 45677888888888777777762 22 2222221 1233333332 2244678888999999999999 799999999
Q ss_pred CCCCHHHHHHHHHHhh
Q 021221 152 GSRTLDSLVAFYSDVT 167 (316)
Q Consensus 152 G~~~~~~l~~fi~~~~ 167 (316)
|..+.++|..-|++..
T Consensus 96 g~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 96 GFVTADELASSIEKVW 111 (506)
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999998887753
No 310
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=81.84 E-value=4.1 Score=33.40 Aligned_cols=54 Identities=17% Similarity=0.325 Sum_probs=33.7
Q ss_pred EEEEEcC------CChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCC----hhhHhhcCC----CccceEEEEeCc
Q 021221 85 AVLFYAS------WCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIR----PSILSKYGV----HGFPTLFLLNSS 145 (316)
Q Consensus 85 lV~Fya~------WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~----~~l~~~~~I----~~~Pti~l~~g~ 145 (316)
+|.|.++ +|++|++.+..|+.+. +. +...|.+.+ .+|.+..+- ..+|.+++ +|+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~-----V~-~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI-~G~ 69 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFR-----VK-FDERDVSMDSGFREELRELLGAELKAVSLPRVFV-DGR 69 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCC-----Cc-EEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE-CCE
Confidence 4567777 8999999999988753 22 222333333 345555554 57887765 553
No 311
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=81.65 E-value=0.91 Score=36.06 Aligned_cols=31 Identities=13% Similarity=0.104 Sum_probs=24.9
Q ss_pred cCCCccccccCCcccCChhhhhchHHHHHHHHHHHH
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYLALATAFVL 221 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~~ 221 (316)
+.+++.| ++ +||++|++. .|.+.+++..+..
T Consensus 18 k~vll~F-~a--twC~~C~~~--~p~l~~l~~~~~~ 48 (132)
T cd02964 18 KTVGLYF-SA--SWCPPCRAF--TPKLVEFYEKLKE 48 (132)
T ss_pred CEEEEEE-EC--CCCchHHHH--HHHHHHHHHHHhh
Confidence 3467777 89 999999998 8888888777653
No 312
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=81.59 E-value=0.088 Score=46.05 Aligned_cols=60 Identities=20% Similarity=0.154 Sum_probs=48.7
Q ss_pred ccCCCccccccCCcccCChhhhhchHHHHHHHHHHH-----------------HHHhHHhhhhhHhHhhccceehhhhcc
Q 021221 185 EKHNNTEEESCPFSWARSPENLLQQETYLALATAFV-----------------LLRLVYIFLPTLLIFAQFTWRRLIRNL 247 (316)
Q Consensus 185 ~~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~-----------------~~~~~i~~~Ptl~~~~~~~~~~~~~~~ 247 (316)
...++.+| ++ |||-+|+++ ++.|..+|..-. .-||.+...|||--...|..++|.+-=
T Consensus 39 ~gewmi~~-~a--p~~psc~~~--~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvkDGeFrrysgaR 113 (248)
T KOG0913|consen 39 TGEWMIEF-GA--PWCPSCSDL--IPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVKDGEFRRYSGAR 113 (248)
T ss_pred chHHHHHh-cC--CCCccccch--HHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEeeccccccccCcc
Confidence 44578888 99 999999999 999999987643 278888889999988999888886544
Q ss_pred cc
Q 021221 248 KL 249 (316)
Q Consensus 248 ~~ 249 (316)
+-
T Consensus 114 dk 115 (248)
T KOG0913|consen 114 DK 115 (248)
T ss_pred cc
Confidence 33
No 313
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=81.42 E-value=1.7 Score=33.63 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=40.6
Q ss_pred cceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC
Q 021221 58 IVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS 112 (316)
Q Consensus 58 ~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~ 112 (316)
.+..++|+.++|++. .+++++|.=-|+-|+.-. .-..+++|.++|.+
T Consensus 5 ~~~~~~G~~v~l~~y-------~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~ 51 (108)
T PF00255_consen 5 SAKDIDGKPVSLSKY-------KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKD 51 (108)
T ss_dssp EEEBTTSSEEEGGGG-------TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGG
T ss_pred eeeCCCCCEECHHHc-------CCCEEEEEecccccCCcc-ccHHHHHHHHHHhc
Confidence 456678999998888 889999999999999998 67799999999874
No 314
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.94 E-value=0.91 Score=32.49 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=39.0
Q ss_pred EEEEcCCChHHHhhhHHHHHHHHHcCCC----------cEEEEEeCCCChhhHhhcCCCccceEEEEeCceeE
Q 021221 86 VLFYASWCPFSRNFRPSFSVLSSLYSSI----------PHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRV 148 (316)
Q Consensus 86 V~Fya~WC~~Ck~~~p~~~~la~~~~~~----------~~v~~~~~~~~~~l~~~~~I~~~Pti~l~~g~~~~ 148 (316)
+.|+|.-||.|......++++.-.|.-+ .++..-|....=+-.+..|--|+|.+..=+|+.+.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 6799999999998887777765444321 11111121111133456677899999876776654
No 315
>PHA03075 glutaredoxin-like protein; Provisional
Probab=79.46 E-value=2.2 Score=33.30 Aligned_cols=30 Identities=17% Similarity=0.362 Sum_probs=27.6
Q ss_pred CeEEEEEEcCCChHHHhhhHHHHHHHHHcC
Q 021221 82 EYVAVLFYASWCPFSRNFRPSFSVLSSLYS 111 (316)
Q Consensus 82 ~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~ 111 (316)
|.+++.|.-|-|+-|+.....+.++.++|+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 568999999999999999999999998885
No 316
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=79.07 E-value=3.6 Score=27.49 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=31.8
Q ss_pred EEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCCh-hhHhhcCCCccceEEE
Q 021221 86 VLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRP-SILSKYGVHGFPTLFL 141 (316)
Q Consensus 86 V~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~-~l~~~~~I~~~Pti~l 141 (316)
..|+.++|+.|++.+-.++...-.| ....+...+... ++.+..+-..+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLPY---ELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCc---EEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 3578899999999888877663333 122222111111 2555567778998764
No 317
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=78.72 E-value=3.5 Score=28.55 Aligned_cols=71 Identities=8% Similarity=0.047 Sum_probs=41.7
Q ss_pred EEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEEeCceeEEEeCCCCHHHHHHHHHH
Q 021221 86 VLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSD 165 (316)
Q Consensus 86 V~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~~g~~~~~~~G~~~~~~l~~fi~~ 165 (316)
..|+.++|+.|++.+-.+++..-.|. ...++-....+++.+......+|++. .+|.. -.+...|.+++++
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~~~---~~~v~~~~~~~~~~~~~p~~~vP~l~-~~~~~------l~es~aI~~yL~~ 71 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVSVE---IIDVDPDNPPEDLAELNPYGTVPTLV-DRDLV------LYESRIIMEYLDE 71 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCccE---EEEcCCCCCCHHHHhhCCCCCCCEEE-ECCEE------EEcHHHHHHHHHh
Confidence 56888999999999887766543332 11222122234555555666899774 23321 1356677777765
Q ss_pred h
Q 021221 166 V 166 (316)
Q Consensus 166 ~ 166 (316)
.
T Consensus 72 ~ 72 (73)
T cd03059 72 R 72 (73)
T ss_pred h
Confidence 3
No 318
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=78.19 E-value=9.3 Score=34.19 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=40.1
Q ss_pred ccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCC-CccceEEEE
Q 021221 78 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGV-HGFPTLFLL 142 (316)
Q Consensus 78 ~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I-~~~Pti~l~ 142 (316)
..++|+.++...+.|||.|-..+=.+-.+-.+|.+. .+.....+. .++ -.+||+++.
T Consensus 55 ~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~-~l~~~~S~~-------~d~~pn~Ptl~F~ 112 (249)
T PF06053_consen 55 APNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNF-SLEYHYSDP-------YDNYPNTPTLIFN 112 (249)
T ss_pred CCCCeeEEEEEecccCccchhhHHHHHHHHHhcCCe-eeEEeecCc-------ccCCCCCCeEEEe
Confidence 357899999999999999999875555555667765 444333321 122 468999887
No 319
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=77.95 E-value=6.7 Score=27.13 Aligned_cols=68 Identities=18% Similarity=0.242 Sum_probs=36.9
Q ss_pred EEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEEe-CceeEEEeCCCCHHHHHHHHH
Q 021221 86 VLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLN-SSMRVRYHGSRTLDSLVAFYS 164 (316)
Q Consensus 86 V~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~~-g~~~~~~~G~~~~~~l~~fi~ 164 (316)
..|+.++|++|++.+-.+....-.|. .+.+ +........+..+-..+|++.. + |.. -.+...|.++++
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~~~---~~~~-~~~~~~~~~~~~~~~~vP~L~~-~~~~~------l~es~aI~~yL~ 70 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIPVE---QIIL-QNDDEATPIRMIGAKQVPILEK-DDGSF------MAESLDIVAFID 70 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCCeE---EEEC-CCCchHHHHHhcCCCccCEEEe-CCCeE------eehHHHHHHHHh
Confidence 35778999999998877776533332 1222 2222222233344456888743 3 322 124566666664
No 320
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=77.87 E-value=2.1 Score=32.63 Aligned_cols=81 Identities=6% Similarity=0.028 Sum_probs=41.2
Q ss_pred EEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeC-CCChhhHhhcCCCccceEEEE--eCceeEEE----eCCCCHH
Q 021221 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEES-AIRPSILSKYGVHGFPTLFLL--NSSMRVRY----HGSRTLD 157 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~-~~~~~l~~~~~I~~~Pti~l~--~g~~~~~~----~G~~~~~ 157 (316)
+..|+.++|+.|++....+++..-. ...+.+.+. ....++.+-.+-.+.+.--++ ++...... ....+.+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~---~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ls~~ 77 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIE---YEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDELSDE 77 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCC---cEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccCCCHH
Confidence 3578999999999998887764222 223333221 112233333333333333333 22111110 2345677
Q ss_pred HHHHHHHHhhC
Q 021221 158 SLVAFYSDVTA 168 (316)
Q Consensus 158 ~l~~fi~~~~~ 168 (316)
++.+++.++-.
T Consensus 78 e~~~~l~~~p~ 88 (105)
T cd02977 78 EALELMAEHPK 88 (105)
T ss_pred HHHHHHHhCcC
Confidence 77777776544
No 321
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=76.37 E-value=2.3 Score=29.67 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=33.1
Q ss_pred EEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCC-CChhhHhhcCCCccceEE
Q 021221 86 VLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESA-IRPSILSKYGVHGFPTLF 140 (316)
Q Consensus 86 V~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~-~~~~l~~~~~I~~~Pti~ 140 (316)
..|+.++|+.|++.+-.+++..-.|.- ..+...+.+ ..+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~~e~-~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLELNL-KEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCCCEE-EEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 468899999999888777765433321 111111111 235666666667899995
No 322
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=76.26 E-value=39 Score=27.27 Aligned_cols=98 Identities=10% Similarity=0.178 Sum_probs=62.7
Q ss_pred HHHHHhHHh---ccCCCeEEEEEEcCCC----hHHHhhh--HHHHHHHHHcCCCcEEEEEeCCC-C--------------
Q 021221 69 LQMALNMVH---KNSHEYVAVLFYASWC----PFSRNFR--PSFSVLSSLYSSIPHFAIEESAI-R-------------- 124 (316)
Q Consensus 69 ~~~~~~~i~---~~~~~~vlV~Fya~WC----~~Ck~~~--p~~~~la~~~~~~~~v~~~~~~~-~-------------- 124 (316)
+++++++.. .+..|+.+|+-..|-- .+|+... +.+-++-+ .+.+..+-+-.+. +
T Consensus 6 ~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~--~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~ 83 (136)
T cd02990 6 LEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLS--QNFITWGWDMTKESNKARFLSSCTRHFGS 83 (136)
T ss_pred HHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHH--cCEEEEeeeccchhhhhHHHHhhhhhhhH
Confidence 555555441 2457999999999887 4566552 33333333 2345555542221 1
Q ss_pred --hhhHhhcCCCccceEEEE--eC---ceeEEEeCCCCHHHHHHHHHHhhC
Q 021221 125 --PSILSKYGVHGFPTLFLL--NS---SMRVRYHGSRTLDSLVAFYSDVTA 168 (316)
Q Consensus 125 --~~l~~~~~I~~~Pti~l~--~g---~~~~~~~G~~~~~~l~~fi~~~~~ 168 (316)
....+.++...+|.+.++ .. ..+.+..|..+.+++.+-+.....
T Consensus 84 ~a~~~~~~~~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve 134 (136)
T cd02990 84 VAAQTIRNIKTDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAME 134 (136)
T ss_pred HHHHHHHhcCcCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHh
Confidence 124566789999999988 22 456788899999999998877553
No 323
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=76.05 E-value=1.5 Score=34.55 Aligned_cols=30 Identities=13% Similarity=0.139 Sum_probs=24.3
Q ss_pred cCCCccccccCCcccCChhhhhchHHHHHHHHHHH
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYLALATAFV 220 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~ 220 (316)
+.+++.| ++ +||.+|++. .|.+..+...+.
T Consensus 19 k~vll~F-wa--~wC~~C~~~--~p~l~~~~~~~~ 48 (131)
T cd03009 19 KTVGLYF-SA--SWCPPCRAF--TPKLVEFYEKLK 48 (131)
T ss_pred cEEEEEE-EC--CCChHHHHH--hHHHHHHHHHHH
Confidence 3467788 99 999999998 888887777665
No 324
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=75.56 E-value=6.1 Score=34.72 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=35.0
Q ss_pred hhHhhcCCCccceEEEEeCceeEEEeCCCCHHHHHHHHHHhhCCC
Q 021221 126 SILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSDVTASL 170 (316)
Q Consensus 126 ~l~~~~~I~~~Pti~l~~g~~~~~~~G~~~~~~l~~fi~~~~~~~ 170 (316)
..+++.||+++||+++ +++ ....|..+.+.+...|.+.++..
T Consensus 175 ~~A~e~gI~gVP~fv~-d~~--~~V~Gaq~~~v~~~al~~~~~~~ 216 (225)
T COG2761 175 AAAQEMGIRGVPTFVF-DGK--YAVSGAQPYDVLEDALRQLLAEK 216 (225)
T ss_pred HHHHHCCCccCceEEE-cCc--EeecCCCCHHHHHHHHHHHHhcc
Confidence 4678899999999998 433 55689999999999999998844
No 325
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=73.81 E-value=41 Score=26.29 Aligned_cols=75 Identities=11% Similarity=0.080 Sum_probs=48.4
Q ss_pred CChHHHhhhHHHHHHHHHcCC--CcEEEEEeCCCCh-----------hhHhhcCCCc-cceEEEE--eCceeEEEeCCCC
Q 021221 92 WCPFSRNFRPSFSVLSSLYSS--IPHFAIEESAIRP-----------SILSKYGVHG-FPTLFLL--NSSMRVRYHGSRT 155 (316)
Q Consensus 92 WC~~Ck~~~p~~~~la~~~~~--~~~v~~~~~~~~~-----------~l~~~~~I~~-~Pti~l~--~g~~~~~~~G~~~ 155 (316)
--+.=+.+...+++-...+.. ++.+.+.+..... .+.++|++.. .-+++++ +|++..++..+.+
T Consensus 21 ~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r~~~p~~ 100 (118)
T PF13778_consen 21 DDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGVKLRWPEPID 100 (118)
T ss_pred CCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcEEEecCCCCC
Confidence 444455555566554444433 4455554443333 7888998653 2344555 8999999999999
Q ss_pred HHHHHHHHHHh
Q 021221 156 LDSLVAFYSDV 166 (316)
Q Consensus 156 ~~~l~~fi~~~ 166 (316)
.++|-+.|+..
T Consensus 101 ~~~lf~~ID~M 111 (118)
T PF13778_consen 101 PEELFDTIDAM 111 (118)
T ss_pred HHHHHHHHhCC
Confidence 99999988753
No 326
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=72.73 E-value=3.5 Score=31.67 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=18.1
Q ss_pred EEEEEcCCChHHHhhhHHHHHH
Q 021221 85 AVLFYASWCPFSRNFRPSFSVL 106 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~l 106 (316)
+..|+.|+|+.|++....+++-
T Consensus 1 i~iy~~~~C~~crka~~~L~~~ 22 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR 22 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc
Confidence 3578999999999988777754
No 327
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=72.57 E-value=1.6 Score=35.83 Aligned_cols=30 Identities=0% Similarity=-0.230 Sum_probs=23.9
Q ss_pred cCCCccccccCCcccCChhhhhchHHHHHHHHHHH
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYLALATAFV 220 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~ 220 (316)
+.+++.| .| +||..|++. .|....+...+.
T Consensus 26 k~vlL~F-wA--sWCppCr~e--~P~L~~ly~~~~ 55 (146)
T cd03008 26 RVLLLFF-GA--VVSPQCQLF--APKLKDFFVRLT 55 (146)
T ss_pred CEEEEEE-EC--CCChhHHHH--HHHHHHHHHHHH
Confidence 3467777 89 999999999 888888776554
No 328
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=71.27 E-value=2.3 Score=46.12 Aligned_cols=29 Identities=7% Similarity=-0.164 Sum_probs=24.2
Q ss_pred cCCCccccccCCcccCChhhhhchHHHHHHHHHH
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYLALATAF 219 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f 219 (316)
+.+++.| ++ .||.+|+.. .|.+.+++..|
T Consensus 421 K~vll~F-WA--sWC~pC~~e--~P~L~~l~~~y 449 (1057)
T PLN02919 421 KVVILDF-WT--YCCINCMHV--LPDLEFLEKKY 449 (1057)
T ss_pred CEEEEEE-EC--CcChhHHhH--hHHHHHHHHHc
Confidence 4468888 99 999999998 88888887765
No 329
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=70.78 E-value=1.7 Score=34.94 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=21.2
Q ss_pred HHHhHHhhhhhHhHhhccceehhhh
Q 021221 221 LLRLVYIFLPTLLIFAQFTWRRLIR 245 (316)
Q Consensus 221 ~~~~~i~~~Ptl~~~~~~~~~~~~~ 245 (316)
..+|+|.+.||+.+|.+|..+..+.
T Consensus 84 A~~fgV~siPTLl~FkdGk~v~~i~ 108 (132)
T PRK11509 84 GDRFGVFRFPATLVFTGGNYRGVLN 108 (132)
T ss_pred HHHcCCccCCEEEEEECCEEEEEEe
Confidence 4899999999999999998765443
No 330
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=70.37 E-value=4.2 Score=31.45 Aligned_cols=21 Identities=10% Similarity=0.127 Sum_probs=17.8
Q ss_pred EEEEcCCChHHHhhhHHHHHH
Q 021221 86 VLFYASWCPFSRNFRPSFSVL 106 (316)
Q Consensus 86 V~Fya~WC~~Ck~~~p~~~~l 106 (316)
..|+.++|+.|++....+++-
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~ 22 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH 22 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc
Confidence 468899999999998877763
No 331
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=70.14 E-value=6.8 Score=33.61 Aligned_cols=43 Identities=30% Similarity=0.403 Sum_probs=33.0
Q ss_pred hhhHhhcCCCccceEEEE-eCceeEEEeC--CCCHHHHHHHHHHhh
Q 021221 125 PSILSKYGVHGFPTLFLL-NSSMRVRYHG--SRTLDSLVAFYSDVT 167 (316)
Q Consensus 125 ~~l~~~~~I~~~Pti~l~-~g~~~~~~~G--~~~~~~l~~fi~~~~ 167 (316)
..++++.|+.||||+.+- ||+...-=.| ..+.+++..++.+.+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 468899999999999999 7766554455 446788888887764
No 332
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=69.33 E-value=5.4 Score=31.93 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=18.0
Q ss_pred EEEEEcCCChHHHhhhHHHHHH
Q 021221 85 AVLFYASWCPFSRNFRPSFSVL 106 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~l 106 (316)
+..|+.++|+.|++....+++-
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~ 23 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH 23 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 4578999999999988777653
No 333
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=69.20 E-value=85 Score=28.06 Aligned_cols=101 Identities=16% Similarity=0.183 Sum_probs=56.4
Q ss_pred HHHHHhHHhccCCCeEEEEEEcCC------ChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhh----cCCCc---
Q 021221 69 LQMALNMVHKNSHEYVAVLFYASW------CPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSK----YGVHG--- 135 (316)
Q Consensus 69 ~~~~~~~i~~~~~~~vlV~Fya~W------C~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~----~~I~~--- 135 (316)
+.+.-.+++.+-+++|-|.+|.+- -..=+.+...+++.+..-++...+..+|.+.+++..++ +||..
T Consensus 12 LS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~~~~ 91 (271)
T PF09822_consen 12 LSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQPVQI 91 (271)
T ss_pred CCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCccce
Confidence 333334445555677777777665 33334444445555544455778888887666666555 88877
Q ss_pred -------------cceEEEEeC--ceeEEEeC----CCCHHHHHHHHHHhhCC
Q 021221 136 -------------FPTLFLLNS--SMRVRYHG----SRTLDSLVAFYSDVTAS 169 (316)
Q Consensus 136 -------------~Pti~l~~g--~~~~~~~G----~~~~~~l~~fi~~~~~~ 169 (316)
++.+++-.| .....+.. ..-..+|...|.+.+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~~E~~lt~aI~~v~~~ 144 (271)
T PF09822_consen 92 EIVDNGKASIVTVYGGIVVEYGDREEVIPFLDSMSEFNLEYELTSAIRRVTSD 144 (271)
T ss_pred eecccccccceeecCeEEEEECCeEEEeecccccccccHHHHHHHHHHHHhcc
Confidence 444444322 22233322 12356777777777663
No 334
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=67.81 E-value=2.5 Score=31.08 Aligned_cols=28 Identities=11% Similarity=0.037 Sum_probs=23.2
Q ss_pred CCccccccCCcccCChhhhhchHHHHHHHHHHH
Q 021221 188 NNTEEESCPFSWARSPENLLQQETYLALATAFV 220 (316)
Q Consensus 188 ~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~ 220 (316)
+++.| ++ +||++|+.+ .|.+..++..+.
T Consensus 35 ~~v~f-~~--~~C~~C~~~--~~~l~~~~~~~~ 62 (127)
T COG0526 35 VLVDF-WA--PWCPPCRAE--APLLEELAEEYG 62 (127)
T ss_pred EEEEE-Ec--CcCHHHHhh--chhHHHHHHHhc
Confidence 45555 67 999999999 999999998874
No 335
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=66.52 E-value=3.5 Score=30.23 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=43.4
Q ss_pred EEcCCChHHHhhhHHHHHHHHH-cCCCcEEEEEeCCCChhhHhhcCCCccceEEE
Q 021221 88 FYASWCPFSRNFRPSFSVLSSL-YSSIPHFAIEESAIRPSILSKYGVHGFPTLFL 141 (316)
Q Consensus 88 Fya~WC~~Ck~~~p~~~~la~~-~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l 141 (316)
|-+.--+.+++....++.+.+. .++...+.++|..+++++++.++|-.+||++-
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLik 57 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLIK 57 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHHT
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEee
Confidence 4444456677777888888875 55678899999999999999999999999863
No 336
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=66.01 E-value=8 Score=32.74 Aligned_cols=36 Identities=14% Similarity=0.328 Sum_probs=28.3
Q ss_pred hhhHhhcCCCccceEEEEeCceeEEEeCCCCHHHHHHHH
Q 021221 125 PSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFY 163 (316)
Q Consensus 125 ~~l~~~~~I~~~Pti~l~~g~~~~~~~G~~~~~~l~~fi 163 (316)
.+.+.+.||.|+||+++ +|+ ....|..+.+.|.+.|
T Consensus 165 ~~~a~~~gv~G~Pt~vv-~g~--~~~~G~~~~~~~~~~i 200 (201)
T cd03024 165 EARARQLGISGVPFFVF-NGK--YAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHCCCCcCCEEEE-CCe--EeecCCCCHHHHHHHh
Confidence 45677899999999988 654 3467999998888765
No 337
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=65.94 E-value=2.6 Score=32.91 Aligned_cols=28 Identities=18% Similarity=0.100 Sum_probs=22.3
Q ss_pred CCCccccccCCcccCChhhhhchHHHHHHHHHH
Q 021221 187 HNNTEEESCPFSWARSPENLLQQETYLALATAF 219 (316)
Q Consensus 187 ~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f 219 (316)
.+++.| ++ +||.+|... .|.+..++..+
T Consensus 27 ~vvv~F-~a--~~C~~C~~~--~~~l~~l~~~~ 54 (127)
T cd03010 27 PYLLNV-WA--SWCAPCREE--HPVLMALARQG 54 (127)
T ss_pred EEEEEE-Ec--CcCHHHHHH--HHHHHHHHHhc
Confidence 467778 88 999999998 88888776553
No 338
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=65.13 E-value=12 Score=32.38 Aligned_cols=43 Identities=21% Similarity=0.389 Sum_probs=33.4
Q ss_pred CChhhHhhcCCCccceEEEEeCceeEEEeCCCCHHHHHHHHHH
Q 021221 123 IRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSD 165 (316)
Q Consensus 123 ~~~~l~~~~~I~~~Pti~l~~g~~~~~~~G~~~~~~l~~fi~~ 165 (316)
.++.+.++|+|+.+|++++..+.......|..+...-.+.+..
T Consensus 150 IDP~lF~~F~I~~VPafVv~C~~~yD~I~GNIsl~~ALe~iA~ 192 (212)
T PRK13730 150 IDPTLFSQYGIRSVPALVVFCSQGYDIIRGNLRVGQALEKVAA 192 (212)
T ss_pred ECHHHHHhcCCccccEEEEEcCCCCCEEEecccHHHHHHHHHh
Confidence 3688999999999999999855555667788887666666654
No 339
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=63.93 E-value=6.5 Score=30.61 Aligned_cols=20 Identities=10% Similarity=0.212 Sum_probs=17.5
Q ss_pred EEEEcCCChHHHhhhHHHHH
Q 021221 86 VLFYASWCPFSRNFRPSFSV 105 (316)
Q Consensus 86 V~Fya~WC~~Ck~~~p~~~~ 105 (316)
..|+.++|+.|++....+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA 21 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 46899999999999988876
No 340
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=63.77 E-value=17 Score=26.52 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=32.9
Q ss_pred EEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEE
Q 021221 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFL 141 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l 141 (316)
+..|+.+.|++|++.+-.+++..-.|. .+.++.......+.+......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl~~~---~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNIPHE---VININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCCCe---EEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 556778889999998877766533332 222221112234555556678999874
No 341
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=62.82 E-value=4.7 Score=33.67 Aligned_cols=67 Identities=18% Similarity=0.281 Sum_probs=36.7
Q ss_pred CCcceEEeCCcccHHHHHhHHhccCCCeEEEEEE-cCCChHHHh----hhHHHHHHHHHcCCCcEEEEEeCCCChhhH
Q 021221 56 QDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFY-ASWCPFSRN----FRPSFSVLSSLYSSIPHFAIEESAIRPSIL 128 (316)
Q Consensus 56 ~~~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fy-a~WC~~Ck~----~~p~~~~la~~~~~~~~v~~~~~~~~~~l~ 128 (316)
+..+..-+|+.+++.+. ..++++++.|| +..-|-|-+ ++..++++.+.+..+.-+..|+...+..+.
T Consensus 71 D~tL~dedg~sisLkki------t~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sqKaF~ 142 (211)
T KOG0855|consen 71 DFTLKDEDGKSISLKKI------TGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQKAFA 142 (211)
T ss_pred CcccccCCCCeeeeeee------cCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHHHHHhh
Confidence 33444556677666665 45568888888 333444544 356667766655444444444433333333
No 342
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=62.19 E-value=3.1 Score=30.57 Aligned_cols=28 Identities=11% Similarity=-0.028 Sum_probs=21.4
Q ss_pred CCccccccCCcccCChhhhhchHHHHHHHHHHH
Q 021221 188 NNTEEESCPFSWARSPENLLQQETYLALATAFV 220 (316)
Q Consensus 188 ~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~ 220 (316)
.++.| ++ +||.+|++. .|...++...|.
T Consensus 4 ~ll~f-wa--~~c~~c~~~--~~~l~~l~~~~~ 31 (95)
T PF13905_consen 4 VLLYF-WA--SWCPPCKKE--LPKLKELYKKYK 31 (95)
T ss_dssp EEEEE-E---TTSHHHHHH--HHHHHHHHHHHT
T ss_pred EEEEE-EC--CCCHHHHHH--HHHHHHHHHHhC
Confidence 45566 88 999999998 788777777766
No 343
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=60.72 E-value=15 Score=30.61 Aligned_cols=99 Identities=21% Similarity=0.371 Sum_probs=66.8
Q ss_pred CCcceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC--CcEEEEE-------eCCCChh
Q 021221 56 QDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIE-------ESAIRPS 126 (316)
Q Consensus 56 ~~~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~--~~~v~~~-------~~~~~~~ 126 (316)
+..++.++|+.++|++. .++.++|.=-|+-|+.=..--..++.|.++|.+ ...++.- ....+.+
T Consensus 16 df~~~d~~G~~v~l~~y-------rGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~E 88 (171)
T KOG1651|consen 16 DFSAKDLDGEYVSLSQY-------RGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEE 88 (171)
T ss_pred eeEEecCCCCCccHHHh-------CCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHH
Confidence 55678889999999999 899999999999999998777799999999865 3333321 1112223
Q ss_pred ----hHhhcCCCccceEEEEeCceeEEEeCCCCHHHHHHHHHHhhCC
Q 021221 127 ----ILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSDVTAS 169 (316)
Q Consensus 127 ----l~~~~~I~~~Pti~l~~g~~~~~~~G~~~~~~l~~fi~~~~~~ 169 (316)
++.+|+.. +| +|+ .++.+|. ..+-+-+|+++..+.
T Consensus 89 i~~f~~~r~~~~-f~---if~---KidVNG~-~~~PlykfLK~~~~~ 127 (171)
T KOG1651|consen 89 ILNFVKVRYGAE-FP---IFQ---KIDVNGD-NADPLYKFLKKVKGG 127 (171)
T ss_pred HHHHHHhccCCC-Cc---cEe---EEecCCC-CCchHHHHHhhcCCC
Confidence 34555543 23 331 1333444 667788888877663
No 344
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=59.53 E-value=11 Score=29.26 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=18.1
Q ss_pred EEEEEcCCChHHHhhhHHHHHH
Q 021221 85 AVLFYASWCPFSRNFRPSFSVL 106 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~l 106 (316)
+..|+.++|+.|++....+++.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~ 23 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH 23 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 3468899999999988887763
No 345
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=59.45 E-value=4.3 Score=33.90 Aligned_cols=27 Identities=19% Similarity=0.060 Sum_probs=21.2
Q ss_pred cCCCccccccCCcccCChhhhhchHHHHHHHH
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYLALAT 217 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~ 217 (316)
+.+++.| ++ +||.+|++. .|.+.+++.
T Consensus 64 k~vll~F-~a--~wC~~C~~~--~p~l~~l~~ 90 (173)
T TIGR00385 64 KPVLLNV-WA--SWCPPCRAE--HPYLNELAK 90 (173)
T ss_pred CEEEEEE-EC--CcCHHHHHH--HHHHHHHHH
Confidence 3467778 88 999999998 787776653
No 346
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=59.07 E-value=5.4 Score=33.91 Aligned_cols=26 Identities=8% Similarity=-0.074 Sum_probs=22.3
Q ss_pred CccccccCCcccCChhhhhchHHHHHHHHHH
Q 021221 189 NTEEESCPFSWARSPENLLQQETYLALATAF 219 (316)
Q Consensus 189 ~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f 219 (316)
++.| ++ .||.+|++. .|...+++..|
T Consensus 73 lV~F-wa--swCp~C~~e--~P~L~~l~~~~ 98 (181)
T PRK13728 73 VVLF-MQ--GHCPYCHQF--DPVLKQLAQQY 98 (181)
T ss_pred EEEE-EC--CCCHhHHHH--HHHHHHHHHHc
Confidence 4556 89 999999999 99999988876
No 347
>PRK12559 transcriptional regulator Spx; Provisional
Probab=59.05 E-value=11 Score=30.16 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=17.9
Q ss_pred EEEEEcCCChHHHhhhHHHHHH
Q 021221 85 AVLFYASWCPFSRNFRPSFSVL 106 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~l 106 (316)
+..|+.|+|+.|++....+++-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~ 23 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN 23 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 5678999999999988766653
No 348
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=58.64 E-value=5.5 Score=29.50 Aligned_cols=29 Identities=21% Similarity=0.122 Sum_probs=21.3
Q ss_pred cCCCccccccCCcccCChhhhhchHHHHHHHHHH
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYLALATAF 219 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f 219 (316)
+..++.| ++ +||++|++. .+.+..+...+
T Consensus 20 k~~ll~f-~~--~~C~~C~~~--~~~l~~~~~~~ 48 (116)
T cd02966 20 KVVLVNF-WA--SWCPPCRAE--MPELEALAKEY 48 (116)
T ss_pred CEEEEEe-ec--ccChhHHHH--hHHHHHHHHHh
Confidence 3456677 88 999999998 66666666554
No 349
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=58.31 E-value=4.4 Score=34.32 Aligned_cols=25 Identities=8% Similarity=0.058 Sum_probs=20.3
Q ss_pred CCccccccCCcccCChhhhhchHHHHHHHH
Q 021221 188 NNTEEESCPFSWARSPENLLQQETYLALAT 217 (316)
Q Consensus 188 ~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~ 217 (316)
+++.| ++ +||.+|++. .|.+.+++.
T Consensus 71 vvv~F-wa--twC~~C~~e--~p~l~~l~~ 95 (185)
T PRK15412 71 VLLNV-WA--TWCPTCRAE--HQYLNQLSA 95 (185)
T ss_pred EEEEE-EC--CCCHHHHHH--HHHHHHHHH
Confidence 66777 88 999999998 788777653
No 350
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=58.11 E-value=8.2 Score=26.53 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=31.3
Q ss_pred EEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEE--eC-CCChhhHhhcCCCccceEEE
Q 021221 86 VLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIE--ES-AIRPSILSKYGVHGFPTLFL 141 (316)
Q Consensus 86 V~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~--~~-~~~~~l~~~~~I~~~Pti~l 141 (316)
..|+.+.|+.|++.+-.+++..-.|. .+.++ .. ....++.+...-..+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~~~---~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIPYE---WVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcE---EEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 45788999999998877776543332 22222 11 12234444445567899864
No 351
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=57.74 E-value=11 Score=31.63 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=26.2
Q ss_pred hhhHhhcCCCccceEEEEeCceeEEEeCCCCHHHHHHHH
Q 021221 125 PSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFY 163 (316)
Q Consensus 125 ~~l~~~~~I~~~Pti~l~~g~~~~~~~G~~~~~~l~~fi 163 (316)
...+.+.||.|+||+++ +|+ .+.|....+.+.+.+
T Consensus 157 ~~~a~~~gi~gvPtfvv-~g~---~~~G~~~l~~~~~~l 191 (192)
T cd03022 157 TEEAIARGVFGVPTFVV-DGE---MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHHcCCCcCCeEEE-CCe---eecccccHHHHHHHh
Confidence 35677899999999987 664 556877777766654
No 352
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=53.62 E-value=5.1 Score=30.38 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=14.9
Q ss_pred cCCCccccccCCcccCChhhhhchHHHH
Q 021221 186 KHNNTEEESCPFSWARSPENLLQQETYL 213 (316)
Q Consensus 186 ~~~~v~f~~~~~pw~~~~~~~l~~~~~~ 213 (316)
+..++.| +. |||..|+++ .+...
T Consensus 6 k~~v~~F-~~--~~C~~C~~~--~~~~~ 28 (112)
T PF13098_consen 6 KPIVVVF-TD--PWCPYCKKL--EKELF 28 (112)
T ss_dssp SEEEEEE-E---TT-HHHHHH--HHHHH
T ss_pred CEEEEEE-EC--CCCHHHHHH--HHHHH
Confidence 3456667 78 999999988 55544
No 353
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=51.20 E-value=1.4e+02 Score=24.76 Aligned_cols=107 Identities=8% Similarity=0.074 Sum_probs=61.7
Q ss_pred CCcceEEeCCcccHHHHHhHHhccCCCeEEEEEEcCCChHHHhhhHHHHHHHHH-cCC--CcEEEEEeCCCC--------
Q 021221 56 QDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSL-YSS--IPHFAIEESAIR-------- 124 (316)
Q Consensus 56 ~~~v~~l~~~~~~~~~~~~~i~~~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~-~~~--~~~v~~~~~~~~-------- 124 (316)
+..-.+++++.+++..+-.. .-.+|.-+|.+-|---..-..-.|.++.+.+. |+. .....+++.+..
T Consensus 14 d~Gel~l~~~~~~y~~W~s~--~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~dDAi~gt~~fV 91 (160)
T PF09695_consen 14 DKGELILNGDKISYQPWNSA--QLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLDDAIWGTGGFV 91 (160)
T ss_pred CCceEEEcCCcccccccCcc--ccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecccccccchHHH
Confidence 33335567777666665111 12567777777766666666667888888765 554 334444444321
Q ss_pred ---------------------hhhHhhcCCCcc-ceEEEE--eCceeEEEeCCCCHHHHHHHHH
Q 021221 125 ---------------------PSILSKYGVHGF-PTLFLL--NSSMRVRYHGSRTLDSLVAFYS 164 (316)
Q Consensus 125 ---------------------~~l~~~~~I~~~-Pti~l~--~g~~~~~~~G~~~~~~l~~fi~ 164 (316)
..+...++...- -+++++ +|+......|..+.+++.++|.
T Consensus 92 rss~e~~kk~~p~s~~vlD~~G~~~~aW~L~~~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~ 155 (160)
T PF09695_consen 92 RSSAEDSKKEFPWSQFVLDSNGVVRKAWQLQEESSAIIVLDKQGKVQFVKEGALSPAEVQQVIA 155 (160)
T ss_pred HHHHHHhhhhCCCcEEEEcCCCceeccccCCCCCceEEEEcCCccEEEEECCCCCHHHHHHHHH
Confidence 112222232222 335555 5666777789999999988876
No 354
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=50.28 E-value=87 Score=27.28 Aligned_cols=69 Identities=12% Similarity=0.158 Sum_probs=42.6
Q ss_pred CChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEEeCceeEEEeCCCCHHHHHHHHHHhhCCC
Q 021221 92 WCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSDVTASL 170 (316)
Q Consensus 92 WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~~g~~~~~~~G~~~~~~l~~fi~~~~~~~ 170 (316)
-|++||++.-.+. .+-. ...+..+|....++-....--.+=|-++.|++ .+..+.+.|.+||++.+++.
T Consensus 20 dcpf~qr~~m~L~---~k~~-~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~------~~~tDs~~Ie~~Lee~l~~p 88 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGV-PFKVTTVDLSRKPEWFLDISPGGKPPVLKFDE------KWVTDSDKIEEFLEEKLPPP 88 (221)
T ss_pred CChhHHHHHHHHH---HcCC-CceEEEeecCCCcHHHHhhCCCCCCCeEEeCC------ceeccHHHHHHHHHHhcCCC
Confidence 4999998877666 2211 33445555555555554444444444555555 23458899999999999854
No 355
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=50.24 E-value=2.6 Score=41.97 Aligned_cols=48 Identities=17% Similarity=0.157 Sum_probs=35.1
Q ss_pred CCCccccccCCcccCChhhhhchHH-HHHHHHHHH---------------------HHHhHHhhhhhHhHhhccc
Q 021221 187 HNNTEEESCPFSWARSPENLLQQET-YLALATAFV---------------------LLRLVYIFLPTLLIFAQFT 239 (316)
Q Consensus 187 ~~~v~f~~~~~pw~~~~~~~l~~~~-~~~lA~~f~---------------------~~~~~i~~~Ptl~~~~~~~ 239 (316)
.++++| || -||-.||++ ++. +-.....+. ..|+++.+-|++.+|..+.
T Consensus 476 pVmlDf-yA--dWCvtCK~~--e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~~~g 545 (569)
T COG4232 476 PVMLDF-YA--DWCVTCKEN--EKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVPTYLFFGPQG 545 (569)
T ss_pred cEEEee-eh--hHHHHhHhh--hhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEECCCC
Confidence 578899 99 999999997 432 222222221 2899999999999998544
No 356
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=49.46 E-value=29 Score=25.10 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=22.0
Q ss_pred ccceEEEE--eCceeEEEe-CCCCHHHHHHHHHHhh
Q 021221 135 GFPTLFLL--NSSMRVRYH-GSRTLDSLVAFYSDVT 167 (316)
Q Consensus 135 ~~Pti~l~--~g~~~~~~~-G~~~~~~l~~fi~~~~ 167 (316)
.-|+++++ +|+++.+.. ...+.+++.+|+.++.
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 46999999 677666655 5569999999998763
No 357
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=49.31 E-value=10 Score=29.61 Aligned_cols=31 Identities=3% Similarity=-0.319 Sum_probs=25.0
Q ss_pred CCCccccccCCcccCChhhhhchHHHHHHHHHHHHH
Q 021221 187 HNNTEEESCPFSWARSPENLLQQETYLALATAFVLL 222 (316)
Q Consensus 187 ~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~~~ 222 (316)
.+++.| ++ .||..|... .|.+..+...|...
T Consensus 25 ~vvl~F-~a--~~C~~C~~~--~p~l~~l~~~~~~~ 55 (126)
T cd03012 25 VVLLDF-WT--YCCINCLHT--LPYLTDLEQKYKDD 55 (126)
T ss_pred EEEEEE-EC--CCCccHHHH--HHHHHHHHHHcCcC
Confidence 356677 88 999999998 88888888887643
No 358
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=48.73 E-value=20 Score=28.72 Aligned_cols=21 Identities=10% Similarity=0.227 Sum_probs=16.7
Q ss_pred EEEEEcCCChHHHhhhHHHHH
Q 021221 85 AVLFYASWCPFSRNFRPSFSV 105 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~ 105 (316)
+..|+.|+|+.|++....+++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~ 22 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA 22 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 457888999999998766654
No 359
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=47.38 E-value=33 Score=28.65 Aligned_cols=28 Identities=21% Similarity=0.466 Sum_probs=25.4
Q ss_pred EEEEEcCCChHHHhhhHHHHHHHHHcCC
Q 021221 85 AVLFYASWCPFSRNFRPSFSVLSSLYSS 112 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~la~~~~~ 112 (316)
+..|+-+.||.|-...+.++++.+.|++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~ 30 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGG 30 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCC
Confidence 6789999999999999999999999853
No 360
>PTZ00056 glutathione peroxidase; Provisional
Probab=46.71 E-value=7.4 Score=33.50 Aligned_cols=39 Identities=18% Similarity=0.098 Sum_probs=29.7
Q ss_pred CCCccccccCCcccCChhhhhchHHHHHHHHHHHHHHhHHhhhh
Q 021221 187 HNNTEEESCPFSWARSPENLLQQETYLALATAFVLLRLVYIFLP 230 (316)
Q Consensus 187 ~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~~~~~~i~~~P 230 (316)
.+++.| .+ .||+.|.+- .|...++...|....+.|.+++
T Consensus 41 vvlv~f-wA--swC~~C~~e--~p~L~~l~~~~~~~g~~vvgv~ 79 (199)
T PTZ00056 41 VLMITN-SA--SKCGLTKKH--VDQMNRLHSVFNPLGLEILAFP 79 (199)
T ss_pred EEEEEE-EC--CCCCChHHH--HHHHHHHHHHHhcCceEEEEec
Confidence 356677 88 999999987 7889999888876555555554
No 361
>PLN02412 probable glutathione peroxidase
Probab=45.85 E-value=8.5 Score=31.98 Aligned_cols=38 Identities=8% Similarity=-0.050 Sum_probs=29.5
Q ss_pred CCccccccCCcccCChhhhhchHHHHHHHHHHHHHHhHHhhhh
Q 021221 188 NNTEEESCPFSWARSPENLLQQETYLALATAFVLLRLVYIFLP 230 (316)
Q Consensus 188 ~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~~~~~~i~~~P 230 (316)
+++.| ++ +||+.|.+- .|.+.++...|....+.|.+.+
T Consensus 32 vlv~f-~a--~~C~~c~~e--~~~l~~l~~~~~~~g~~vvgv~ 69 (167)
T PLN02412 32 LLIVN-VA--SKCGLTDSN--YKELNVLYEKYKEQGFEILAFP 69 (167)
T ss_pred EEEEE-eC--CCCCChHHH--HHHHHHHHHHHhhCCcEEEEec
Confidence 55666 78 999999976 7888999988887656665554
No 362
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=43.35 E-value=42 Score=29.68 Aligned_cols=41 Identities=15% Similarity=0.166 Sum_probs=32.6
Q ss_pred cCCCeEEEEEEcCCChHHHhhhHHHHHHHHHc-----CCCcEEEEE
Q 021221 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLY-----SSIPHFAIE 119 (316)
Q Consensus 79 ~~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~-----~~~~~v~~~ 119 (316)
..+..+||-+-..+|..|...+..++.|..++ .++.++.+.
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN 69 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVN 69 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEc
Confidence 47899999999999999999999999888654 345555554
No 363
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=43.14 E-value=8.9 Score=31.15 Aligned_cols=38 Identities=8% Similarity=-0.033 Sum_probs=28.1
Q ss_pred CCccccccCCcccCChhhhhchHHHHHHHHHHHHHHhHHhhhh
Q 021221 188 NNTEEESCPFSWARSPENLLQQETYLALATAFVLLRLVYIFLP 230 (316)
Q Consensus 188 ~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~~~~~~i~~~P 230 (316)
+++.| .+ +||..|..- -|...++...|....+.+.+++
T Consensus 25 vvv~~-~a--s~C~~c~~~--~~~l~~l~~~~~~~~~~v~~i~ 62 (153)
T TIGR02540 25 SLVVN-VA--SECGFTDQN--YRALQELHRELGPSHFNVLAFP 62 (153)
T ss_pred EEEEE-eC--CCCCchhhh--HHHHHHHHHHHhhCCeEEEEEe
Confidence 45556 88 999999987 7888888888876555554443
No 364
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=42.61 E-value=14 Score=30.38 Aligned_cols=29 Identities=10% Similarity=-0.016 Sum_probs=23.4
Q ss_pred CCccccccCCcccCChhhhhchHHHHHHHHHHHH
Q 021221 188 NNTEEESCPFSWARSPENLLQQETYLALATAFVL 221 (316)
Q Consensus 188 ~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~~ 221 (316)
+++.| ++ +||..|+.. .+.+..++..|..
T Consensus 64 ~~l~f-~a--~~C~~C~~~--~~~l~~~~~~~~~ 92 (173)
T PRK03147 64 VFLNF-WG--TWCKPCEKE--MPYMNELYPKYKE 92 (173)
T ss_pred EEEEE-EC--CcCHHHHHH--HHHHHHHHHHhhc
Confidence 55666 78 999999998 7888888877754
No 365
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=42.31 E-value=8.8 Score=34.09 Aligned_cols=39 Identities=8% Similarity=-0.083 Sum_probs=29.6
Q ss_pred CCCccccccCCcccCChhhhhchHHHHHHHHHHHHHHhHHhhhh
Q 021221 187 HNNTEEESCPFSWARSPENLLQQETYLALATAFVLLRLVYIFLP 230 (316)
Q Consensus 187 ~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~~~~~~i~~~P 230 (316)
.+++.| ++ +||..|... .|.+.++...|....+.|.+++
T Consensus 101 ~vvl~F-wA--swCp~c~~e--~p~L~~L~~~~~~~Gv~VIgV~ 139 (236)
T PLN02399 101 VLLIVN-VA--SKCGLTSSN--YSELSHLYEKYKTQGFEILAFP 139 (236)
T ss_pred eEEEEE-Ec--CCCcchHHH--HHHHHHHHHHHhcCCcEEEEEe
Confidence 356677 88 999999998 8888999888876555555554
No 366
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=40.72 E-value=15 Score=31.10 Aligned_cols=25 Identities=8% Similarity=-0.104 Sum_probs=19.6
Q ss_pred CCccccccCCcccCChhhhhchHHHHHHHH
Q 021221 188 NNTEEESCPFSWARSPENLLQQETYLALAT 217 (316)
Q Consensus 188 ~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~ 217 (316)
+++.| ++ +||..|++. .|....+..
T Consensus 77 vvl~F-~a--twCp~C~~~--lp~l~~~~~ 101 (189)
T TIGR02661 77 TLLMF-TA--PSCPVCDKL--FPIIKSIAR 101 (189)
T ss_pred EEEEE-EC--CCChhHHHH--HHHHHHHHH
Confidence 56677 88 999999998 777776553
No 367
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=38.26 E-value=7 Score=31.14 Aligned_cols=27 Identities=11% Similarity=-0.234 Sum_probs=19.6
Q ss_pred CCccccccCCcccCChhhhhchHHHHHHHHHH
Q 021221 188 NNTEEESCPFSWARSPENLLQQETYLALATAF 219 (316)
Q Consensus 188 ~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f 219 (316)
.++.| .. |+|.+|.++ .|....+...+
T Consensus 8 ~i~~f-~D--~~Cp~C~~~--~~~l~~~~~~~ 34 (154)
T cd03023 8 TIVEF-FD--YNCGYCKKL--APELEKLLKED 34 (154)
T ss_pred EEEEE-EC--CCChhHHHh--hHHHHHHHHHC
Confidence 44555 67 899999999 78777765443
No 368
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=35.34 E-value=16 Score=29.14 Aligned_cols=29 Identities=10% Similarity=-0.030 Sum_probs=22.5
Q ss_pred CCccccccCCc-ccCChhhhhchHHHHHHHHHHHH
Q 021221 188 NNTEEESCPFS-WARSPENLLQQETYLALATAFVL 221 (316)
Q Consensus 188 ~~v~f~~~~~p-w~~~~~~~l~~~~~~~lA~~f~~ 221 (316)
+++.| ++ . ||++|..- .|...+++..|..
T Consensus 31 ~vv~f-~~--~~~Cp~C~~~--~p~l~~l~~~~~~ 60 (146)
T PF08534_consen 31 VVVNF-WA--SAWCPPCRKE--LPYLNELQEKYKD 60 (146)
T ss_dssp EEEEE-ES--TTTSHHHHHH--HHHHHHHHHHHHT
T ss_pred EEEEE-Ec--cCCCCcchhh--hhhHHhhhhhhcc
Confidence 46667 77 7 99999998 7888888777654
No 369
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=35.07 E-value=47 Score=25.78 Aligned_cols=22 Identities=5% Similarity=0.175 Sum_probs=17.6
Q ss_pred EEEEEcCCChHHHhhhHHHHHH
Q 021221 85 AVLFYASWCPFSRNFRPSFSVL 106 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~l 106 (316)
+..|..|.|+.|++....+++-
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~ 23 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA 23 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc
Confidence 4578899999999988766653
No 370
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=34.74 E-value=54 Score=24.91 Aligned_cols=51 Identities=18% Similarity=0.288 Sum_probs=31.0
Q ss_pred EEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeC--CCChhhHhhcCCC--ccceEEEE
Q 021221 88 FYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEES--AIRPSILSKYGVH--GFPTLFLL 142 (316)
Q Consensus 88 Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~--~~~~~l~~~~~I~--~~Pti~l~ 142 (316)
||-.+||.|......+.+. .....+...+. +...++.+.+++. ..-+.+..
T Consensus 2 ~YDg~C~lC~~~~~~l~~~----d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 56 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR----DRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHL 56 (114)
T ss_pred EECCCCHhHHHHHHHHHhc----CCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE
Confidence 7889999999999888776 22233333333 2334455667765 34444443
No 371
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=34.68 E-value=24 Score=28.55 Aligned_cols=32 Identities=16% Similarity=-0.168 Sum_probs=23.8
Q ss_pred CCCccccccCCcccCChhhhhchHHHHHHHHHHHHHHh
Q 021221 187 HNNTEEESCPFSWARSPENLLQQETYLALATAFVLLRL 224 (316)
Q Consensus 187 ~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~~~~~ 224 (316)
.+++.| ++ .||. |..- .|.+.++...|....+
T Consensus 24 ~vvl~f-wa--twC~-C~~e--~p~l~~l~~~~~~~~~ 55 (152)
T cd00340 24 VLLIVN-VA--SKCG-FTPQ--YEGLEALYEKYKDRGL 55 (152)
T ss_pred EEEEEE-Ec--CCCC-chHH--HHHHHHHHHHhcCCCE
Confidence 356667 88 9999 9887 6888888887754333
No 372
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=33.95 E-value=1.5e+02 Score=20.16 Aligned_cols=71 Identities=17% Similarity=0.159 Sum_probs=38.8
Q ss_pred EEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCC-CccceEEEEeCceeEEEeCCCCHHHHHHHHH
Q 021221 86 VLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGV-HGFPTLFLLNSSMRVRYHGSRTLDSLVAFYS 164 (316)
Q Consensus 86 V~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I-~~~Pti~l~~g~~~~~~~G~~~~~~l~~fi~ 164 (316)
..|+.+.|+.|++..=.+++..-.|. .+.++.....+++.+.... ..+|++.. +|.. -.+...|.++++
T Consensus 2 ~Ly~~~~sp~~~~v~~~l~~~gl~~~---~~~~~~~~~~~~~~~~~p~~~~vP~l~~-~~~~------l~eS~aI~~yL~ 71 (74)
T cd03058 2 KLLGAWASPFVLRVRIALALKGVPYE---YVEEDLGNKSELLLASNPVHKKIPVLLH-NGKP------ICESLIIVEYID 71 (74)
T ss_pred EEEECCCCchHHHHHHHHHHcCCCCE---EEEeCcccCCHHHHHhCCCCCCCCEEEE-CCEE------eehHHHHHHHHH
Confidence 35667889999998877766533332 1222211122333333332 57998863 3321 235667777776
Q ss_pred Hh
Q 021221 165 DV 166 (316)
Q Consensus 165 ~~ 166 (316)
+.
T Consensus 72 ~~ 73 (74)
T cd03058 72 EA 73 (74)
T ss_pred hh
Confidence 54
No 373
>PF13728 TraF: F plasmid transfer operon protein
Probab=33.91 E-value=12 Score=32.70 Aligned_cols=47 Identities=15% Similarity=-0.053 Sum_probs=38.0
Q ss_pred CCccccccCCcccCChhhhhchHHHHHHHHHHH-------------------------HHHhHHhhhhhHhHhhccc
Q 021221 188 NNTEEESCPFSWARSPENLLQQETYLALATAFV-------------------------LLRLVYIFLPTLLIFAQFT 239 (316)
Q Consensus 188 ~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~-------------------------~~~~~i~~~Ptl~~~~~~~ 239 (316)
.++-| +. +.|..|+.+ .|....++..|- ..+++|..+|++.+...+.
T Consensus 123 gL~~F-~~--~~C~~C~~~--~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~ 194 (215)
T PF13728_consen 123 GLFFF-YR--SDCPYCQQQ--APILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNT 194 (215)
T ss_pred EEEEE-Ec--CCCchhHHH--HHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCC
Confidence 45556 77 889999999 999999999883 2678888899988886554
No 374
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=33.90 E-value=80 Score=21.57 Aligned_cols=56 Identities=20% Similarity=0.244 Sum_probs=31.7
Q ss_pred EEEEcCCChHHHhhhHHHHH--HHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEEeC
Q 021221 86 VLFYASWCPFSRNFRPSFSV--LSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNS 144 (316)
Q Consensus 86 V~Fya~WC~~Ck~~~p~~~~--la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~~g 144 (316)
..|+.+.|+.|.+.+-.+++ ..-.| ..+.++.....+++.+...-..+|++..-+|
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~~~i~~---~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~g 59 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETGLGDDV---ELVLVNPWSDDESLLAVNPLGKIPALVLDDG 59 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhCCCCCc---EEEEcCcccCChHHHHhCCCCCCCEEEECCC
Confidence 35678889999988776665 22112 2222222223345555555667898764344
No 375
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=33.80 E-value=51 Score=29.86 Aligned_cols=84 Identities=19% Similarity=0.204 Sum_probs=51.6
Q ss_pred CCCeEEEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeC-----CCChhhHhhcCCC-ccceEEEE-eCceeEEEeC
Q 021221 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEES-----AIRPSILSKYGVH-GFPTLFLL-NSSMRVRYHG 152 (316)
Q Consensus 80 ~~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~-----~~~~~l~~~~~I~-~~Pti~l~-~g~~~~~~~G 152 (316)
......|.-|++-|..=..+.|..+. ++=.+++++=-. ..++.+...|... +.|++..+ =|.+ .-|.+
T Consensus 73 ~~~t~~IR~Y~sDCn~le~v~pAa~~----~g~kv~lGiw~tdd~~~~~~~til~ay~~~~~~d~v~~v~VGnE-al~r~ 147 (305)
T COG5309 73 ASYTHSIRTYGSDCNTLENVLPAAEA----SGFKVFLGIWPTDDIHDAVEKTILSAYLPYNGWDDVTTVTVGNE-ALNRN 147 (305)
T ss_pred ccCCceEEEeeccchhhhhhHHHHHh----cCceEEEEEeeccchhhhHHHHHHHHHhccCCCCceEEEEechh-hhhcC
Confidence 45666999999888766555554433 332334443211 1223566666654 57777666 3443 34678
Q ss_pred CCCHHHHHHHHHHhhC
Q 021221 153 SRTLDSLVAFYSDVTA 168 (316)
Q Consensus 153 ~~~~~~l~~fi~~~~~ 168 (316)
..+.++|.+.|.+.-.
T Consensus 148 ~~tasql~~~I~~vrs 163 (305)
T COG5309 148 DLTASQLIEYIDDVRS 163 (305)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8899999999987643
No 376
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=33.69 E-value=31 Score=28.80 Aligned_cols=22 Identities=32% Similarity=0.644 Sum_probs=17.5
Q ss_pred hhhHhhcCCCccceEEEEeCce
Q 021221 125 PSILSKYGVHGFPTLFLLNSSM 146 (316)
Q Consensus 125 ~~l~~~~~I~~~Pti~l~~g~~ 146 (316)
.+.+.++||.|+||+++.++..
T Consensus 159 ~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 159 QKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHcCCCccCEEEEEeCCe
Confidence 3567789999999999995543
No 377
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=32.97 E-value=45 Score=23.01 Aligned_cols=73 Identities=11% Similarity=0.078 Sum_probs=39.9
Q ss_pred EEEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeC-CCChhhHhhcCCCccceEEEEeCceeEEEeCCCCHHHHHHHH
Q 021221 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEES-AIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFY 163 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~-~~~~~l~~~~~I~~~Pti~l~~g~~~~~~~G~~~~~~l~~fi 163 (316)
+..|+.+.|+.|++..-.+++..-.|.. ..+..... ...+++.+......+|++.. +|.. -.....|.+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~-~~~~~~~~~~~~~~~~~~~P~~~vP~l~~-~g~~------l~es~aI~~yL 73 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYEL-VPVDLTKGEHKSPEHLARNPFGQIPALED-GDLK------LFESRAITRYL 73 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEE-EEeCccccccCCHHHHhhCCCCCCCEEEE-CCEE------EEcHHHHHHHH
Confidence 4456677799999988777765433321 11111111 12245555566677998752 3321 13556677776
Q ss_pred HH
Q 021221 164 SD 165 (316)
Q Consensus 164 ~~ 165 (316)
.+
T Consensus 74 ~~ 75 (76)
T cd03053 74 AE 75 (76)
T ss_pred hh
Confidence 54
No 378
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=31.45 E-value=16 Score=31.05 Aligned_cols=39 Identities=13% Similarity=-0.012 Sum_probs=30.8
Q ss_pred CCCccccccCCcccCChhhhhchHHHHHHHHHHHHHHhHHhhhhh
Q 021221 187 HNNTEEESCPFSWARSPENLLQQETYLALATAFVLLRLVYIFLPT 231 (316)
Q Consensus 187 ~~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~~~~~~i~~~Pt 231 (316)
.+++.| .| .||+.|++ -+.+.+|...|....+.|.++|.
T Consensus 27 vvLVvf-~A--S~C~~~~q---~~~L~~L~~~y~~~gl~Vlg~p~ 65 (183)
T PRK10606 27 VLLIVN-VA--SKCGLTPQ---YEQLENIQKAWADQGFVVLGFPC 65 (183)
T ss_pred EEEEEE-Ee--CCCCCcHH---HHHHHHHHHHHhhCCeEEEEeec
Confidence 356677 88 99999976 46888899888877777888875
No 379
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=30.84 E-value=39 Score=23.63 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=32.4
Q ss_pred EEEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEeC--C-CChhhHhhcCCCccceEEEEeC
Q 021221 86 VLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEES--A-IRPSILSKYGVHGFPTLFLLNS 144 (316)
Q Consensus 86 V~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~--~-~~~~l~~~~~I~~~Pti~l~~g 144 (316)
..|+.+.|+.|++.+-.+++..-.| ..+.++.. + ..+++.+.-.-..+|++. .+|
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl~~---e~~~v~~~~~~~~~~~~~~inP~g~vP~L~-~~g 59 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGLRC---EEYDVSLPLSEHNEPWFMRLNPTGEVPVLI-HGD 59 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCCCC---EEEEecCCcCccCCHHHHHhCcCCCCCEEE-ECC
Confidence 4688889999999886666554333 22222211 1 233465555666799985 244
No 380
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=29.76 E-value=3.6e+02 Score=23.17 Aligned_cols=95 Identities=16% Similarity=0.280 Sum_probs=55.9
Q ss_pred cccHHHHHhHHhccCCCeEEEEEE-cCCChHHHhhhHHHHHHHHHcCC--CcEEEEE-----------------------
Q 021221 66 EVSLQMALNMVHKNSHEYVAVLFY-ASWCPFSRNFRPSFSVLSSLYSS--IPHFAIE----------------------- 119 (316)
Q Consensus 66 ~~~~~~~~~~i~~~~~~~vlV~Fy-a~WC~~Ck~~~p~~~~la~~~~~--~~~v~~~----------------------- 119 (316)
++++.+. .++.+++.|| ++.-+-|-.....|.+...+|+. ...+++.
T Consensus 25 ~i~l~d~-------~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i 97 (194)
T COG0450 25 EITLSDY-------YGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKI 97 (194)
T ss_pred EEechhh-------cCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccce
Confidence 6677776 3477777777 56667777777777777666653 2222221
Q ss_pred ----eCCCChhhHhhcCCCc------cceEEEEeCceeEEE----e-C-CCCHHHHHHHHHHhh
Q 021221 120 ----ESAIRPSILSKYGVHG------FPTLFLLNSSMRVRY----H-G-SRTLDSLVAFYSDVT 167 (316)
Q Consensus 120 ----~~~~~~~l~~~~~I~~------~Pti~l~~g~~~~~~----~-G-~~~~~~l~~fi~~~~ 167 (316)
-.|...++++.||+.. +=.+++++.+.++++ . + .|+.+++...|+...
T Consensus 98 ~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAlq 161 (194)
T COG0450 98 KFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQ 161 (194)
T ss_pred ecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHHH
Confidence 0123458899998863 223345543333222 2 2 678899988877653
No 381
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=29.32 E-value=2.4e+02 Score=20.93 Aligned_cols=69 Identities=10% Similarity=0.137 Sum_probs=40.3
Q ss_pred cCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCCCccceEEEEeCceeEEEeCCCCHHHHHHHHHHhhC
Q 021221 90 ASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSDVTA 168 (316)
Q Consensus 90 a~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~~g~~~~~~~G~~~~~~l~~fi~~~~~ 168 (316)
..+|++|++.+=.+.+..=.| ..+.++......++.+..-...+|++.- +|. +. .+...|.++|++...
T Consensus 19 ~g~cpf~~rvrl~L~eKgi~y---e~~~vd~~~~p~~~~~~nP~g~vPvL~~-~~~-~i-----~eS~~I~eYLde~~~ 87 (91)
T cd03061 19 IGNCPFCQRLFMVLWLKGVVF---NVTTVDMKRKPEDLKDLAPGTQPPFLLY-NGE-VK-----TDNNKIEEFLEETLC 87 (91)
T ss_pred CCCChhHHHHHHHHHHCCCce---EEEEeCCCCCCHHHHHhCCCCCCCEEEE-CCE-Ee-----cCHHHHHHHHHHHcc
Confidence 367999999887766542122 2233322223345555555667996642 332 21 367889999988765
No 382
>PF14060 DUF4252: Domain of unknown function (DUF4252)
Probab=28.24 E-value=2.9e+02 Score=22.18 Aligned_cols=72 Identities=18% Similarity=0.267 Sum_probs=37.4
Q ss_pred CCChHHHhhhHHHHHHHH--HcCCCcEEEEEeCCCChhhHhhcCCCccceEEEE-e---CceeEEEeCCCCHHHHHHHHH
Q 021221 91 SWCPFSRNFRPSFSVLSS--LYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-N---SSMRVRYHGSRTLDSLVAFYS 164 (316)
Q Consensus 91 ~WC~~Ck~~~p~~~~la~--~~~~~~~v~~~~~~~~~~l~~~~~I~~~Pti~l~-~---g~~~~~~~G~~~~~~l~~fi~ 164 (316)
+.|..-+.+...++.+.+ .|.....+. +.++.-.+.-+-+=..+--++++ . +-.+....|..+.++|.+.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~ye~l~~~~--~~~~~v~i~~k~~~~~i~elvi~~~~~~e~~~v~i~G~i~~~~I~~l~~ 154 (155)
T PF14060_consen 77 EDCSNKQEFRKEFNKLKKLSGYEELMSVK--DDGEKVRIYVKEKGDKIKELVILVSDKDEFVVVRIKGDIDPEDISKLIK 154 (155)
T ss_pred cCcchHHHHHHHHHHHHcchhhHHHhhcc--CCCCceEEEEecCCcccceEEEEEeCCCcEEEEEEeCCCCHHHHHHHHc
Confidence 455555555555555554 232222221 11122222222222356667777 2 234678889999999988764
No 383
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=28.18 E-value=80 Score=29.59 Aligned_cols=53 Identities=8% Similarity=0.268 Sum_probs=42.5
Q ss_pred EEEEeCCCChhhHhhcCCCccceEEEE---eCceeEEEeCCCCHHHHHHHHHHhhC
Q 021221 116 FAIEESAIRPSILSKYGVHGFPTLFLL---NSSMRVRYHGSRTLDSLVAFYSDVTA 168 (316)
Q Consensus 116 v~~~~~~~~~~l~~~~~I~~~Pti~l~---~g~~~~~~~G~~~~~~l~~fi~~~~~ 168 (316)
...+|..+...+..-|.+...|.+.++ .|+.+.+..|....++|.+-+++.+.
T Consensus 135 lV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~ 190 (356)
T KOG1364|consen 135 LVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFID 190 (356)
T ss_pred EEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHh
Confidence 345566677889999999999988888 58888899898888887777776654
No 384
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=28.16 E-value=10 Score=32.47 Aligned_cols=63 Identities=16% Similarity=0.035 Sum_probs=49.6
Q ss_pred CCccccccCCcccCChhhhhchHHHHHHHHHHH---------------HHHhHHhhhhhHhHhhcccee-hhhhcccccc
Q 021221 188 NNTEEESCPFSWARSPENLLQQETYLALATAFV---------------LLRLVYIFLPTLLIFAQFTWR-RLIRNLKLGS 251 (316)
Q Consensus 188 ~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~---------------~~~~~i~~~Ptl~~~~~~~~~-~~~~~~~~~~ 251 (316)
+.+-| |- |--..|+-| ..-++.||..++ +.|++|+..|++.+|.+|..+ ++++.-.||+
T Consensus 87 VVcHF-Y~--~~f~RCKim--DkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkVLP~v~l~k~g~~~D~iVGF~dLGn 161 (211)
T KOG1672|consen 87 VVCHF-YR--PEFFRCKIM--DKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKVLPTVALFKNGKTVDYVVGFTDLGN 161 (211)
T ss_pred EEEEE-Ec--CCCcceehH--HHHHHHHHHhcccceEEEEecccCceeeeeeeeeEeeeEEEEEcCEEEEEEeeHhhcCC
Confidence 66777 88 777799999 889999998864 489999999999999999875 5566666774
Q ss_pred cchh
Q 021221 252 LLEH 255 (316)
Q Consensus 252 ~~~~ 255 (316)
--++
T Consensus 162 kDdF 165 (211)
T KOG1672|consen 162 KDDF 165 (211)
T ss_pred CCcC
Confidence 3333
No 385
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=27.68 E-value=69 Score=29.96 Aligned_cols=76 Identities=9% Similarity=0.110 Sum_probs=49.0
Q ss_pred ChHHHhhhHHHH----HHHHHcCC---CcEEEEEeCCCC---hhhHhhcCCCc--cceEEEE-eCceeEEEeCCCCHHHH
Q 021221 93 CPFSRNFRPSFS----VLSSLYSS---IPHFAIEESAIR---PSILSKYGVHG--FPTLFLL-NSSMRVRYHGSRTLDSL 159 (316)
Q Consensus 93 C~~Ck~~~p~~~----~la~~~~~---~~~v~~~~~~~~---~~l~~~~~I~~--~Pti~l~-~g~~~~~~~G~~~~~~l 159 (316)
||-|-+..-.+. ++.+.+.+ -..+++..|-.| ..--..+||.+ -|...+| +|+.+.+..+..-.++|
T Consensus 264 CP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~eel 343 (361)
T COG0821 264 CPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEEL 343 (361)
T ss_pred CCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHHH
Confidence 999987754333 33333433 244555544322 23345667765 5888888 88888888888888888
Q ss_pred HHHHHHhhC
Q 021221 160 VAFYSDVTA 168 (316)
Q Consensus 160 ~~fi~~~~~ 168 (316)
...++++..
T Consensus 344 ~~~i~~~~~ 352 (361)
T COG0821 344 EALIEAYAE 352 (361)
T ss_pred HHHHHHHHH
Confidence 888887765
No 386
>PTZ00256 glutathione peroxidase; Provisional
Probab=27.19 E-value=32 Score=28.94 Aligned_cols=33 Identities=9% Similarity=0.063 Sum_probs=25.8
Q ss_pred ccCCcccCChhhhhchHHHHHHHHHHHHHHhHHhhhh
Q 021221 194 SCPFSWARSPENLLQQETYLALATAFVLLRLVYIFLP 230 (316)
Q Consensus 194 ~~~~pw~~~~~~~l~~~~~~~lA~~f~~~~~~i~~~P 230 (316)
.+ .||+.|..- .|.+.++...|....+.|.+++
T Consensus 49 ~a--twCp~C~~e--~p~l~~l~~~~~~~gv~vv~vs 81 (183)
T PTZ00256 49 VA--CKCGLTSDH--YTQLVELYKQYKSQGLEILAFP 81 (183)
T ss_pred EC--CCCCchHHH--HHHHHHHHHHHhhCCcEEEEEe
Confidence 67 999999987 8889999988876555555554
No 387
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=27.12 E-value=16 Score=28.16 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=23.1
Q ss_pred HHHHhHHhhhhhHhHhhccceehhhhccc
Q 021221 220 VLLRLVYIFLPTLLIFAQFTWRRLIRNLK 248 (316)
Q Consensus 220 ~~~~~~i~~~Ptl~~~~~~~~~~~~~~~~ 248 (316)
+..||++..+|++.+|..|.+...+..|.
T Consensus 74 L~~r~gv~~~PaLvf~R~g~~lG~i~gi~ 102 (107)
T PF07449_consen 74 LAARFGVRRWPALVFFRDGRYLGAIEGIR 102 (107)
T ss_dssp HHHHHT-TSSSEEEEEETTEEEEEEESSS
T ss_pred HHHHhCCccCCeEEEEECCEEEEEecCee
Confidence 44899999999999999999776666554
No 388
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=26.50 E-value=91 Score=22.08 Aligned_cols=68 Identities=7% Similarity=0.102 Sum_probs=35.8
Q ss_pred cCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCC-ChhhHhhcCCCccceEEEEe-CceeEEEeCCCCHHHHHHHHHHh
Q 021221 90 ASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAI-RPSILSKYGVHGFPTLFLLN-SSMRVRYHGSRTLDSLVAFYSDV 166 (316)
Q Consensus 90 a~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~-~~~l~~~~~I~~~Pti~l~~-g~~~~~~~G~~~~~~l~~fi~~~ 166 (316)
-+||++|++.+-.+.+..-.|.. ..+...+... ...+ +.-....+|++.. + |.. -.+...|.+++++.
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~~~~-~~~~~~~~~~~~~~~-~~~p~~~vP~L~~-~~~~~------l~eS~aI~~yL~~~ 82 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLEYKT-VPVEFPDIPPILGEL-TSGGFYTVPVIVD-GSGEV------IGDSFAIAEYLEEA 82 (84)
T ss_pred CCcCChhHHHHHHHHhCCCCCeE-EEecCCCcccccccc-cCCCCceeCeEEE-CCCCE------EeCHHHHHHHHHHh
Confidence 47899999988777765433321 1111111100 1112 1223457898753 4 432 23677888888765
No 389
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=23.62 E-value=1.2e+02 Score=24.39 Aligned_cols=10 Identities=20% Similarity=0.384 Sum_probs=6.8
Q ss_pred ChHHHhhhHH
Q 021221 93 CPFSRNFRPS 102 (316)
Q Consensus 93 C~~Ck~~~p~ 102 (316)
||+|+++.-+
T Consensus 88 CG~CRQ~i~E 97 (134)
T COG0295 88 CGACRQVLAE 97 (134)
T ss_pred cHHHHHHHHH
Confidence 8888875533
No 390
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=23.57 E-value=2.1e+02 Score=23.31 Aligned_cols=18 Identities=33% Similarity=0.606 Sum_probs=13.9
Q ss_pred CCcceEEeCCcccHHHHH
Q 021221 56 QDIVGVIEGDEVSLQMAL 73 (316)
Q Consensus 56 ~~~v~~l~~~~~~~~~~~ 73 (316)
...|..++|++++.+++-
T Consensus 38 ~~~VG~VnGe~Is~~ef~ 55 (145)
T PF13623_consen 38 QNVVGEVNGEKISYQEFQ 55 (145)
T ss_pred CCeeEeECCEEcCHHHHH
Confidence 445888999999977763
No 391
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=23.07 E-value=21 Score=32.34 Aligned_cols=49 Identities=16% Similarity=-0.009 Sum_probs=37.1
Q ss_pred CCccccccCCcccCChhhhhchHHHHHHHHHHHH--------------HHhHHhhhhhHhHhhcccee
Q 021221 188 NNTEEESCPFSWARSPENLLQQETYLALATAFVL--------------LRLVYIFLPTLLIFAQFTWR 241 (316)
Q Consensus 188 ~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~~--------------~~~~i~~~Ptl~~~~~~~~~ 241 (316)
+.|-+ |- |-+.-|+.| ...+..||..|.. .+|.+...|||++|.+|..+
T Consensus 149 VVVHi-Y~--~~~~~C~~m--n~~L~~LA~kyp~vKFvkI~a~~~~~~~~f~~~~LPtllvYk~G~l~ 211 (265)
T PF02114_consen 149 VVVHI-YE--PGFPRCEIM--NSCLECLARKYPEVKFVKIRASKCPASENFPDKNLPTLLVYKNGDLI 211 (265)
T ss_dssp EEEEE-E---TTSCCHHHH--HHHHHHHHHH-TTSEEEEEEECGCCTTTTS-TTC-SEEEEEETTEEE
T ss_pred EEEEE-Ee--CCCchHHHH--HHHHHHHHHhCCceEEEEEehhccCcccCCcccCCCEEEEEECCEEE
Confidence 45555 87 888999999 9999999999853 57888889999999999753
No 392
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=22.86 E-value=90 Score=26.71 Aligned_cols=38 Identities=24% Similarity=0.475 Sum_probs=25.7
Q ss_pred hhHhhcCCCccceEEEEe-CceeEEEeCCCCHHHHHHHH
Q 021221 126 SILSKYGVHGFPTLFLLN-SSMRVRYHGSRTLDSLVAFY 163 (316)
Q Consensus 126 ~l~~~~~I~~~Pti~l~~-g~~~~~~~G~~~~~~l~~fi 163 (316)
+-+.+.||.|+||+++=+ ++....|-|.--.+.+.+++
T Consensus 170 ~~A~~~Gv~GVP~fvv~~~~~~~e~fwG~Drl~~~~~~l 208 (209)
T cd03021 170 DEALKYGAFGLPWIVVTNDKGKTEMFFGSDRFEQVADFL 208 (209)
T ss_pred HHHHHcCCCCCCEEEEEcCCCCccceecCCcHHHHHHHh
Confidence 445667999999999852 23335777876666666554
No 393
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=22.58 E-value=1e+02 Score=24.16 Aligned_cols=22 Identities=9% Similarity=0.090 Sum_probs=18.2
Q ss_pred EEEEEcCCChHHHhhhHHHHHH
Q 021221 85 AVLFYASWCPFSRNFRPSFSVL 106 (316)
Q Consensus 85 lV~Fya~WC~~Ck~~~p~~~~l 106 (316)
+..|+.|.|.-|++....+++-
T Consensus 3 itiy~~p~C~t~rka~~~L~~~ 24 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEH 24 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 5678899999999988777753
No 394
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=22.45 E-value=2.1e+02 Score=19.89 Aligned_cols=75 Identities=12% Similarity=0.122 Sum_probs=40.5
Q ss_pred EEEcCCChHHHhhhHHHHHHHHHcCCCcEEEEEe-CCCChhhHhhcCCCccceEEEEe--CceeEEEeCCCCHHHHHHHH
Q 021221 87 LFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEE-SAIRPSILSKYGVHGFPTLFLLN--SSMRVRYHGSRTLDSLVAFY 163 (316)
Q Consensus 87 ~Fya~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~-~~~~~~l~~~~~I~~~Pti~l~~--g~~~~~~~G~~~~~~l~~fi 163 (316)
.+|...++.|++..-.+++..-.|.. ..+.... ....+++.+......+|++..-+ |.. -.....|.+++
T Consensus 3 ~Ly~~~~~~~~~v~~~l~~~gl~~~~-~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~------l~eS~aI~~yL 75 (81)
T cd03048 3 TLYTHGTPNGFKVSIMLEELGLPYEI-HPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLT------VFESGAILLYL 75 (81)
T ss_pred EEEeCCCCChHHHHHHHHHcCCCcEE-EEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceE------EEcHHHHHHHH
Confidence 34444469999988877766433321 1111111 11234455545556789875322 211 13567788888
Q ss_pred HHhhC
Q 021221 164 SDVTA 168 (316)
Q Consensus 164 ~~~~~ 168 (316)
.+..+
T Consensus 76 ~~~~~ 80 (81)
T cd03048 76 AEKYD 80 (81)
T ss_pred HHHhC
Confidence 87654
No 395
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=22.42 E-value=89 Score=29.49 Aligned_cols=74 Identities=12% Similarity=0.155 Sum_probs=42.6
Q ss_pred ChHHHhhhHHHHHHHH----HcCC---CcEEEEEeCCCCh---hhHhhcCCC-ccce-EEEE-eCceeEEE-eCCCCHHH
Q 021221 93 CPFSRNFRPSFSVLSS----LYSS---IPHFAIEESAIRP---SILSKYGVH-GFPT-LFLL-NSSMRVRY-HGSRTLDS 158 (316)
Q Consensus 93 C~~Ck~~~p~~~~la~----~~~~---~~~v~~~~~~~~~---~l~~~~~I~-~~Pt-i~l~-~g~~~~~~-~G~~~~~~ 158 (316)
||-|-+..=.++++++ ...+ -..+++.-|..|. .--.+|||- +-|- ..+| +|+.+.+. ....-.+.
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~vd~ 350 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEIVDE 350 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCHHHH
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHHHHHHH
Confidence 8888776555555544 3333 4678888886552 223457776 4343 6777 77777777 66666788
Q ss_pred HHHHHHHh
Q 021221 159 LVAFYSDV 166 (316)
Q Consensus 159 l~~fi~~~ 166 (316)
|.+.|+++
T Consensus 351 L~~~I~~~ 358 (359)
T PF04551_consen 351 LIELIEEH 358 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 88888765
No 396
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=22.01 E-value=1.7e+02 Score=24.29 Aligned_cols=41 Identities=2% Similarity=-0.105 Sum_probs=34.6
Q ss_pred CCeEEEEEEcCCChHHHhhhHHHHHHHHHcCC-CcEEEEEeC
Q 021221 81 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEES 121 (316)
Q Consensus 81 ~~~vlV~Fya~WC~~Ck~~~p~~~~la~~~~~-~~~v~~~~~ 121 (316)
++-+.+.|+++.++.|.-+.-.++.+|+.|.+ .+.+...++
T Consensus 127 ~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~ 168 (171)
T PF07700_consen 127 DNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVEC 168 (171)
T ss_dssp TTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred CCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence 45678999999999999999999999999988 566665555
No 397
>PF05364 SecIII_SopE_N: Salmonella type III secretion SopE effector N-terminus; InterPro: IPR016018 The type III secretion system of Gram-negative bacteria is used to transport virulence factors from the pathogen directly into the host cell [] and is only triggered when the bacterium comes into close contact with the host. Effector proteins secreted by the type III system do not possess a secretion signal, and are considered unique because of this. Salmonella spp. secrete an effector protein called SopE that is responsible for stimulating the reorganisation of the host cell actin cytoskeleton, and ruffling of the cellular membrane []. It acts as a guanyl-nucleotide-exchange factor on Rho-GTPase proteins such as Cdc42 and Rac. As it is imperative for the bacterium to revert the cell back to its "normal" state as quickly as possible, another tyrosine phosphatase effector called SptP reverses the actions brought about by SopE []. Recently, it has been found that SopE and its protein homologue SopE2 can activate different sets of Rho-GTPases in the host cell []. Far from being a redundant set of two similar type III effectors, they both act in unison to specifically activate different Rho-GTPase signalling cascades in the host cell during infection. This entry represents the N-terminal domain of SopE. The function of this domain is unknown.
Probab=21.75 E-value=25 Score=24.42 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=14.8
Q ss_pred eecCCC-CCCCccccccCcCC
Q 021221 297 VSIGDA-SSSRGACVNECHFH 316 (316)
Q Consensus 297 ~~~~~~-~~~~~~~~~~~~~~ 316 (316)
++|-|. |+-++.-.++.|||
T Consensus 46 ~~LserF~~hkqTe~~athfH 66 (74)
T PF05364_consen 46 SSLSERFSSHKQTESSATHFH 66 (74)
T ss_pred ccchHHHHHhhccCCCccccc
Confidence 455565 66688888888988
No 398
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.92 E-value=61 Score=24.74 Aligned_cols=51 Identities=24% Similarity=0.273 Sum_probs=27.8
Q ss_pred cCCChHHHhhhHHHHHHHHHcCCCcEEEEEeCCCChhhHhhcCC-CccceE-EEE-eCc
Q 021221 90 ASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGV-HGFPTL-FLL-NSS 145 (316)
Q Consensus 90 a~WC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~I-~~~Pti-~l~-~g~ 145 (316)
.|-||++.+....+..... +.+...|.=.++++.+...- ...||+ -+| +|+
T Consensus 27 ~P~CGFS~~~vqiL~~~g~-----v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GE 80 (105)
T COG0278 27 FPQCGFSAQAVQILSACGV-----VDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGE 80 (105)
T ss_pred CCCCCccHHHHHHHHHcCC-----cceeEEeeccCHHHHhccHhhcCCCCCceeeECCE
Confidence 5789999888877776542 22222333234555543322 346666 233 764
No 399
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=20.45 E-value=70 Score=25.10 Aligned_cols=30 Identities=3% Similarity=-0.321 Sum_probs=22.2
Q ss_pred CCccccccCCcccCChhhhhchHHHHHHHHHHHH
Q 021221 188 NNTEEESCPFSWARSPENLLQQETYLALATAFVL 221 (316)
Q Consensus 188 ~~v~f~~~~~pw~~~~~~~l~~~~~~~lA~~f~~ 221 (316)
+++-|..+ .||..|++- .+.+..+...|..
T Consensus 26 ~vl~f~~~--~~Cp~C~~~--~~~l~~~~~~~~~ 55 (149)
T cd02970 26 VVVVFYRG--FGCPFCREY--LRALSKLLPELDA 55 (149)
T ss_pred EEEEEECC--CCChhHHHH--HHHHHHHHHHHHh
Confidence 34444246 899999998 7888888888753
Done!