Query 021223
Match_columns 316
No_of_seqs 187 out of 1777
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 14:32:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021223.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021223hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 80.5 0.88 3E-05 30.0 2.0 30 132-161 16-45 (56)
2 3j21_g 50S ribosomal protein L 78.7 0.64 2.2E-05 30.2 0.9 30 132-161 11-40 (51)
3 1x4u_A Zinc finger, FYVE domai 68.7 2.4 8.3E-05 30.3 2.1 24 135-158 14-39 (84)
4 1wfk_A Zinc finger, FYVE domai 67.3 2.7 9.2E-05 30.5 2.1 26 133-158 7-34 (88)
5 1z2q_A LM5-1; membrane protein 67.0 2.8 9.7E-05 30.0 2.1 25 134-158 20-46 (84)
6 2yw8_A RUN and FYVE domain-con 65.4 3 0.0001 29.7 2.0 26 134-159 18-45 (82)
7 1joc_A EEA1, early endosomal a 64.0 3.1 0.0001 32.3 1.9 24 135-158 69-94 (125)
8 2dkt_A Ring finger and CHY zin 60.4 2.8 9.7E-05 33.3 1.1 45 130-174 78-126 (143)
9 1dvp_A HRS, hepatocyte growth 56.2 4.2 0.00014 34.6 1.6 24 136-159 162-187 (220)
10 1vfy_A Phosphatidylinositol-3- 55.2 3.4 0.00012 28.7 0.7 23 136-158 12-36 (73)
11 3t7l_A Zinc finger FYVE domain 54.5 5.9 0.0002 28.7 1.9 25 134-158 19-45 (90)
12 1y02_A CARP2, FYVE-ring finger 52.3 4 0.00014 31.5 0.7 23 136-158 20-44 (120)
13 3zyq_A Hepatocyte growth facto 49.7 5.7 0.0002 33.9 1.4 24 136-159 165-190 (226)
14 3j20_Y 30S ribosomal protein S 44.2 8.4 0.00029 24.7 1.2 24 133-156 17-44 (50)
15 2cr8_A MDM4 protein; ZF-ranbp 44.0 8.6 0.00029 24.7 1.2 22 135-156 11-32 (53)
16 2c6a_A Ubiquitin-protein ligas 38.7 12 0.0004 23.6 1.2 24 134-157 12-35 (46)
17 3u5e_m 60S ribosomal protein L 37.2 13 0.00045 28.4 1.6 27 132-158 90-118 (128)
18 2jrp_A Putative cytoplasmic pr 31.2 13 0.00045 26.4 0.6 22 135-157 18-39 (81)
19 2vrw_B P95VAV, VAV1, proto-onc 30.8 16 0.00055 33.6 1.3 31 133-163 355-393 (406)
20 2dkt_A Ring finger and CHY zin 28.2 12 0.00043 29.5 0.0 35 133-167 96-136 (143)
21 3mpx_A FYVE, rhogef and PH dom 27.2 13 0.00045 34.5 0.0 25 134-158 374-400 (434)
22 1wfl_A Zinc finger protein 216 26.0 82 0.0028 21.8 3.9 36 134-170 24-64 (74)
23 2zjr_Z 50S ribosomal protein L 24.7 33 0.0011 22.8 1.6 23 132-156 27-50 (60)
24 2xzm_5 Ribosomal protein S26E 24.2 20 0.00067 27.3 0.5 20 148-167 19-38 (119)
25 3u5c_a 40S ribosomal protein S 23.5 21 0.0007 27.2 0.5 19 148-166 19-37 (119)
26 1wil_A KIAA1045 protein; ring 23.0 52 0.0018 23.5 2.5 25 134-158 14-38 (89)
27 2apo_B Ribosome biogenesis pro 23.0 39 0.0013 22.5 1.7 22 134-157 5-26 (60)
28 3v2d_5 50S ribosomal protein L 22.9 33 0.0011 22.8 1.3 23 132-156 27-50 (60)
29 1twf_L ABC10-alpha, DNA-direct 22.3 42 0.0014 23.0 1.8 28 133-160 26-56 (70)
30 3jyw_9 60S ribosomal protein L 21.4 36 0.0012 23.5 1.4 29 132-160 23-55 (72)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=80.54 E-value=0.88 Score=30.04 Aligned_cols=30 Identities=27% Similarity=0.644 Sum_probs=25.2
Q ss_pred CccceecccccccCCCCCccCcccCccccc
Q 021223 132 HQGVRFCQKCNQFKPPRCHHCSVCRRCILK 161 (316)
Q Consensus 132 ~~~~~~C~~C~~~kP~RahHC~~C~~CV~r 161 (316)
......|.+|...-|+|+..|+.||.--+|
T Consensus 16 ~~~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 16 VFLKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp SCCCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred HhchhhhccccCcCCcccccccCCCCCCCC
Confidence 456789999999999999999998865443
No 2
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=78.70 E-value=0.64 Score=30.25 Aligned_cols=30 Identities=20% Similarity=0.409 Sum_probs=25.2
Q ss_pred CccceecccccccCCCCCccCcccCccccc
Q 021223 132 HQGVRFCQKCNQFKPPRCHHCSVCRRCILK 161 (316)
Q Consensus 132 ~~~~~~C~~C~~~kP~RahHC~~C~~CV~r 161 (316)
......|..|+..-|+++..|+.||.--+|
T Consensus 11 ~~~k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 11 IFKKYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SSSEEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred HhCCccCCCCCCcCCCCceecCCCCCcccc
Confidence 456789999999999999999999865443
No 3
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.66 E-value=2.4 Score=30.31 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=17.5
Q ss_pred ceeccccccc--CCCCCccCcccCcc
Q 021223 135 VRFCQKCNQF--KPPRCHHCSVCRRC 158 (316)
Q Consensus 135 ~~~C~~C~~~--kP~RahHC~~C~~C 158 (316)
...|..|+.. --.|-|||+.||+-
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcE
Confidence 4568788742 35788999999873
No 4
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=67.29 E-value=2.7 Score=30.46 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=19.0
Q ss_pred ccceeccccccc--CCCCCccCcccCcc
Q 021223 133 QGVRFCQKCNQF--KPPRCHHCSVCRRC 158 (316)
Q Consensus 133 ~~~~~C~~C~~~--kP~RahHC~~C~~C 158 (316)
.+...|..|+.. --.|-|||+.||+-
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~v 34 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRA 34 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCE
Confidence 445678888742 34788999999873
No 5
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=66.95 E-value=2.8 Score=29.97 Aligned_cols=25 Identities=28% Similarity=0.646 Sum_probs=18.3
Q ss_pred cceeccccccc--CCCCCccCcccCcc
Q 021223 134 GVRFCQKCNQF--KPPRCHHCSVCRRC 158 (316)
Q Consensus 134 ~~~~C~~C~~~--kP~RahHC~~C~~C 158 (316)
+...|..|+.. --.|-|||+.||+-
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v 46 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYV 46 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcE
Confidence 45678888742 24688999999874
No 6
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=65.45 E-value=3 Score=29.72 Aligned_cols=26 Identities=27% Similarity=0.704 Sum_probs=18.5
Q ss_pred cceeccccccc--CCCCCccCcccCccc
Q 021223 134 GVRFCQKCNQF--KPPRCHHCSVCRRCI 159 (316)
Q Consensus 134 ~~~~C~~C~~~--kP~RahHC~~C~~CV 159 (316)
+...|..|+.. --.|-|||+.||+-+
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEE
Confidence 34678888742 346889999998743
No 7
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=64.01 E-value=3.1 Score=32.27 Aligned_cols=24 Identities=33% Similarity=0.704 Sum_probs=17.7
Q ss_pred ceeccccccc--CCCCCccCcccCcc
Q 021223 135 VRFCQKCNQF--KPPRCHHCSVCRRC 158 (316)
Q Consensus 135 ~~~C~~C~~~--kP~RahHC~~C~~C 158 (316)
...|..|+.. --.|-|||+.||+-
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~v 94 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNI 94 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred CCCCcCcCCccccccccccCCCCCeE
Confidence 4578888742 35689999999874
No 8
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=60.44 E-value=2.8 Score=33.28 Aligned_cols=45 Identities=27% Similarity=0.611 Sum_probs=30.4
Q ss_pred CCCccceecccccccCCC-CCccCcccCcccccc---CccCcccccccc
Q 021223 130 PKHQGVRFCQKCNQFKPP-RCHHCSVCRRCILKM---DHHCVWVVNCVG 174 (316)
Q Consensus 130 ~~~~~~~~C~~C~~~kP~-RahHC~~C~~CV~r~---DHHCpWl~nCIG 174 (316)
+......||.+|+.+.++ ..+||..||-|..+- =-||.=-|.|+.
T Consensus 78 g~~f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 78 STLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp CCBSCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred CccceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 345667899999988544 467888888888761 235665566643
No 9
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=56.22 E-value=4.2 Score=34.56 Aligned_cols=24 Identities=33% Similarity=0.812 Sum_probs=18.3
Q ss_pred eeccccccc--CCCCCccCcccCccc
Q 021223 136 RFCQKCNQF--KPPRCHHCSVCRRCI 159 (316)
Q Consensus 136 ~~C~~C~~~--kP~RahHC~~C~~CV 159 (316)
..|..|+.. --.|-|||+.||+-+
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CccCCCCCccCCcccccccCCcCCEE
Confidence 689999742 346899999999754
No 10
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=55.21 E-value=3.4 Score=28.66 Aligned_cols=23 Identities=30% Similarity=0.649 Sum_probs=16.8
Q ss_pred eeccccccc--CCCCCccCcccCcc
Q 021223 136 RFCQKCNQF--KPPRCHHCSVCRRC 158 (316)
Q Consensus 136 ~~C~~C~~~--kP~RahHC~~C~~C 158 (316)
..|..|+.. --.|-|||+.||+-
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v 36 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGV 36 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCE
T ss_pred CcccCCCCccCCccccccCCCCCEE
Confidence 358888742 34688999999874
No 11
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=54.48 E-value=5.9 Score=28.70 Aligned_cols=25 Identities=28% Similarity=0.658 Sum_probs=17.7
Q ss_pred cceeccccccc--CCCCCccCcccCcc
Q 021223 134 GVRFCQKCNQF--KPPRCHHCSVCRRC 158 (316)
Q Consensus 134 ~~~~C~~C~~~--kP~RahHC~~C~~C 158 (316)
+...|..|+.. --.|-|||+.||+-
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v 45 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKV 45 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCE
Confidence 34678888742 24578999999874
No 12
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=52.29 E-value=4 Score=31.47 Aligned_cols=23 Identities=22% Similarity=0.644 Sum_probs=17.1
Q ss_pred eecccccc--cCCCCCccCcccCcc
Q 021223 136 RFCQKCNQ--FKPPRCHHCSVCRRC 158 (316)
Q Consensus 136 ~~C~~C~~--~kP~RahHC~~C~~C 158 (316)
..|..|+. .--.|-|||+.||+-
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~i 44 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKN 44 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCE
T ss_pred CcccCcCCccccccccccCCCCCCe
Confidence 56888874 235688999999984
No 13
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=49.65 E-value=5.7 Score=33.94 Aligned_cols=24 Identities=29% Similarity=0.697 Sum_probs=17.5
Q ss_pred eecccccc--cCCCCCccCcccCccc
Q 021223 136 RFCQKCNQ--FKPPRCHHCSVCRRCI 159 (316)
Q Consensus 136 ~~C~~C~~--~kP~RahHC~~C~~CV 159 (316)
..|..|+. ---.|-|||+.||+.+
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCcCcCCCCCccccccccCCCcCEe
Confidence 47999973 1245789999999853
No 14
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=44.18 E-value=8.4 Score=24.69 Aligned_cols=24 Identities=25% Similarity=0.737 Sum_probs=14.8
Q ss_pred ccceecccccc--cC--CCCCccCcccC
Q 021223 133 QGVRFCQKCNQ--FK--PPRCHHCSVCR 156 (316)
Q Consensus 133 ~~~~~C~~C~~--~k--P~RahHC~~C~ 156 (316)
...++|+.|.. .. -...++|..|+
T Consensus 17 ~~~k~CP~CG~~~fm~~~~~R~~C~kCG 44 (50)
T 3j20_Y 17 RKNKFCPRCGPGVFMADHGDRWACGKCG 44 (50)
T ss_dssp CSSEECSSSCSSCEEEECSSEEECSSSC
T ss_pred EecccCCCCCCceEEecCCCeEECCCCC
Confidence 35789999985 11 12245677765
No 15
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=44.05 E-value=8.6 Score=24.70 Aligned_cols=22 Identities=27% Similarity=0.730 Sum_probs=15.1
Q ss_pred ceecccccccCCCCCccCcccC
Q 021223 135 VRFCQKCNQFKPPRCHHCSVCR 156 (316)
Q Consensus 135 ~~~C~~C~~~kP~RahHC~~C~ 156 (316)
.=.|.+|+..-||-..||..|-
T Consensus 11 ~WkC~~C~k~N~Pl~ryC~rCw 32 (53)
T 2cr8_A 11 EWQCTECKKFNSPSKRYCFRCW 32 (53)
T ss_dssp CEECSSSCCEECSSCCBCTTTC
T ss_pred eeecccccccCCCccchhHHHH
Confidence 3457777777777777776664
No 16
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=38.72 E-value=12 Score=23.58 Aligned_cols=24 Identities=33% Similarity=0.840 Sum_probs=17.7
Q ss_pred cceecccccccCCCCCccCcccCc
Q 021223 134 GVRFCQKCNQFKPPRCHHCSVCRR 157 (316)
Q Consensus 134 ~~~~C~~C~~~kP~RahHC~~C~~ 157 (316)
..=.|.+|+..-||-..||..|-.
T Consensus 12 D~WkC~~C~~~N~Pl~r~C~rCw~ 35 (46)
T 2c6a_A 12 DYWKCTSCNEMNPPLPSHCNRCWA 35 (46)
T ss_dssp GCEECTTTCCEECSSCSSCTTTCC
T ss_pred ceEecccccccCCCccchhhHHHh
Confidence 345688888888888888877643
No 17
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=37.19 E-value=13 Score=28.45 Aligned_cols=27 Identities=30% Similarity=0.733 Sum_probs=22.8
Q ss_pred CccceecccccccCCCCCccCc--ccCcc
Q 021223 132 HQGVRFCQKCNQFKPPRCHHCS--VCRRC 158 (316)
Q Consensus 132 ~~~~~~C~~C~~~kP~RahHC~--~C~~C 158 (316)
.-....|.+|...-|+|+..|+ .||..
T Consensus 90 n~~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 90 NCDKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp HTSCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred hcceEeeccccccCCchhhccchhhCCCc
Confidence 3456899999999999999999 48754
No 18
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=31.24 E-value=13 Score=26.42 Aligned_cols=22 Identities=23% Similarity=0.643 Sum_probs=13.3
Q ss_pred ceecccccccCCCCCccCcccCc
Q 021223 135 VRFCQKCNQFKPPRCHHCSVCRR 157 (316)
Q Consensus 135 ~~~C~~C~~~kP~RahHC~~C~~ 157 (316)
...|..|+..-++.+ .|..|++
T Consensus 18 ~~~C~~C~~~~~~~a-fCPeCgq 39 (81)
T 2jrp_A 18 TAHCETCAKDFSLQA-LCPDCRQ 39 (81)
T ss_dssp EEECTTTCCEEEEEE-ECSSSCS
T ss_pred ceECccccccCCCcc-cCcchhh
Confidence 445666666555555 6666654
No 19
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=30.78 E-value=16 Score=33.63 Aligned_cols=31 Identities=19% Similarity=0.531 Sum_probs=22.1
Q ss_pred ccceecccccccC---CCCCccCcccCc-----cccccC
Q 021223 133 QGVRFCQKCNQFK---PPRCHHCSVCRR-----CILKMD 163 (316)
Q Consensus 133 ~~~~~C~~C~~~k---P~RahHC~~C~~-----CV~r~D 163 (316)
..+.+|..|+..- -.|-|||+.||. |..+..
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~ 393 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVP 393 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSC
T ss_pred CCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCC
Confidence 4678999998532 468899998875 555444
No 20
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=28.19 E-value=12 Score=29.53 Aligned_cols=35 Identities=23% Similarity=0.630 Sum_probs=23.5
Q ss_pred ccceeccccc---ccCCCCCccCcccCcccc--ccC-ccCc
Q 021223 133 QGVRFCQKCN---QFKPPRCHHCSVCRRCIL--KMD-HHCV 167 (316)
Q Consensus 133 ~~~~~C~~C~---~~kP~RahHC~~C~~CV~--r~D-HHCp 167 (316)
...--|..|+ +=+..--.||..||.|+. ..| |.|.
T Consensus 96 k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~ 136 (143)
T 2dkt_A 96 KRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCI 136 (143)
T ss_dssp SSEEEETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCS
T ss_pred CceecCCCCCceeccCCcCcEECCcCCeeeccccCcCcccC
Confidence 4455565555 444677899999999954 444 7774
No 21
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=27.15 E-value=13 Score=34.50 Aligned_cols=25 Identities=32% Similarity=0.692 Sum_probs=0.0
Q ss_pred cceeccccccc--CCCCCccCcccCcc
Q 021223 134 GVRFCQKCNQF--KPPRCHHCSVCRRC 158 (316)
Q Consensus 134 ~~~~C~~C~~~--kP~RahHC~~C~~C 158 (316)
....|..|+.. --.|-|||+.||+.
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~ 400 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKI 400 (434)
T ss_dssp ---------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCE
Confidence 34678888742 23578999999974
No 22
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=25.97 E-value=82 Score=21.83 Aligned_cols=36 Identities=17% Similarity=0.347 Sum_probs=20.7
Q ss_pred cceecccccccCCCCCccCcccCc-----cccccCccCcccc
Q 021223 134 GVRFCQKCNQFKPPRCHHCSVCRR-----CILKMDHHCVWVV 170 (316)
Q Consensus 134 ~~~~C~~C~~~kP~RahHC~~C~~-----CV~r~DHHCpWl~ 170 (316)
....|..|+..--.=...|+ |+. -.+-=||.|++--
T Consensus 24 ~~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~HRy~e~H~C~fDy 64 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYDY 64 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECT-TSCEECSSSCSTTTTTCCCCG
T ss_pred cCCcChhhCCcccccCeecC-CCCEechhcCCCccCCCcchh
Confidence 35679998753222136777 654 2233388887643
No 23
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=24.71 E-value=33 Score=22.79 Aligned_cols=23 Identities=30% Similarity=0.748 Sum_probs=16.6
Q ss_pred CccceecccccccCCCCCcc-CcccC
Q 021223 132 HQGVRFCQKCNQFKPPRCHH-CSVCR 156 (316)
Q Consensus 132 ~~~~~~C~~C~~~kP~RahH-C~~C~ 156 (316)
......|+.|+..+ +.|| |..||
T Consensus 27 ~p~l~~c~~cG~~~--~pH~vc~~CG 50 (60)
T 2zjr_Z 27 APNLTECPQCHGKK--LSHHICPNCG 50 (60)
T ss_dssp CCCCEECTTTCCEE--CTTBCCTTTC
T ss_pred CCCceECCCCCCEe--CCceEcCCCC
Confidence 44567899999875 5555 77776
No 24
>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_5
Probab=24.25 E-value=20 Score=27.30 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=14.9
Q ss_pred CCccCcccCccccccCccCc
Q 021223 148 RCHHCSVCRRCILKMDHHCV 167 (316)
Q Consensus 148 RahHC~~C~~CV~r~DHHCp 167 (316)
+.-||..|++||.+----+.
T Consensus 19 ~~V~C~nCgr~vPKDKAIKr 38 (119)
T 2xzm_5 19 RTVPCTNCGRQVAKDKAVKR 38 (119)
T ss_dssp CEEECTTTCCEEETTTSEEC
T ss_pred ccEeeCCccccCcccceeEE
Confidence 34579999999998555443
No 25
>3u5c_a 40S ribosomal protein S26-A, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_a
Probab=23.49 E-value=21 Score=27.22 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=14.1
Q ss_pred CCccCcccCccccccCccC
Q 021223 148 RCHHCSVCRRCILKMDHHC 166 (316)
Q Consensus 148 RahHC~~C~~CV~r~DHHC 166 (316)
+.-||..|++||.+----+
T Consensus 19 ~~V~C~nCgr~vPKDKAIK 37 (119)
T 3u5c_a 19 KPVRCVNCSKSIPKDKAIK 37 (119)
T ss_dssp CEEECTTTCCEEEGGGSCE
T ss_pred ccEeeccccccccccceee
Confidence 3457999999999854444
No 26
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=23.04 E-value=52 Score=23.50 Aligned_cols=25 Identities=24% Similarity=0.699 Sum_probs=21.4
Q ss_pred cceecccccccCCCCCccCcccCcc
Q 021223 134 GVRFCQKCNQFKPPRCHHCSVCRRC 158 (316)
Q Consensus 134 ~~~~C~~C~~~kP~RahHC~~C~~C 158 (316)
....|..|..+-..--.-|++|+|+
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~Rv 38 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRV 38 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSC
T ss_pred CCcccCccccccccceecccccccc
Confidence 3468999999988888889999996
No 27
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=22.96 E-value=39 Score=22.48 Aligned_cols=22 Identities=23% Similarity=0.670 Sum_probs=16.1
Q ss_pred cceecccccccCCCCCccCcccCc
Q 021223 134 GVRFCQKCNQFKPPRCHHCSVCRR 157 (316)
Q Consensus 134 ~~~~C~~C~~~kP~RahHC~~C~~ 157 (316)
..+.|..|+.+-- .+.|..||.
T Consensus 5 ~mr~C~~CgvYTL--k~~CP~CG~ 26 (60)
T 2apo_B 5 RMKKCPKCGLYTL--KEICPKCGE 26 (60)
T ss_dssp CCEECTTTCCEES--SSBCSSSCS
T ss_pred hceeCCCCCCEec--cccCcCCCC
Confidence 4688888887665 666777775
No 28
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=22.88 E-value=33 Score=22.79 Aligned_cols=23 Identities=26% Similarity=0.655 Sum_probs=16.0
Q ss_pred CccceecccccccCCCCCcc-CcccC
Q 021223 132 HQGVRFCQKCNQFKPPRCHH-CSVCR 156 (316)
Q Consensus 132 ~~~~~~C~~C~~~kP~RahH-C~~C~ 156 (316)
......|+.|+..+ +.|| |..||
T Consensus 27 ~p~l~~c~~cGe~~--~~H~vc~~CG 50 (60)
T 3v2d_5 27 PPTLVPCPECKAMK--PPHTVCPECG 50 (60)
T ss_dssp CCCCEECTTTCCEE--CTTSCCTTTC
T ss_pred CCceeECCCCCCee--cceEEcCCCC
Confidence 34578899999755 4455 77776
No 29
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=22.27 E-value=42 Score=23.02 Aligned_cols=28 Identities=21% Similarity=0.460 Sum_probs=19.6
Q ss_pred ccceeccccccc---CCCCCccCcccCcccc
Q 021223 133 QGVRFCQKCNQF---KPPRCHHCSVCRRCIL 160 (316)
Q Consensus 133 ~~~~~C~~C~~~---kP~RahHC~~C~~CV~ 160 (316)
...-.|..|+.. ++.-+-||+.||.-|+
T Consensus 26 ~v~Y~C~~CG~~~e~~~~d~irCp~CG~RIL 56 (70)
T 1twf_L 26 TLKYICAECSSKLSLSRTDAVRCKDCGHRIL 56 (70)
T ss_dssp CCCEECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred eEEEECCCCCCcceeCCCCCccCCCCCceEe
Confidence 344679999854 5556778999987554
No 30
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=21.44 E-value=36 Score=23.52 Aligned_cols=29 Identities=21% Similarity=0.511 Sum_probs=21.6
Q ss_pred CccceecccccccCCCCC----ccCcccCcccc
Q 021223 132 HQGVRFCQKCNQFKPPRC----HHCSVCRRCIL 160 (316)
Q Consensus 132 ~~~~~~C~~C~~~kP~Ra----hHC~~C~~CV~ 160 (316)
+.....|+.|...+-.|. -||+.|++=+.
T Consensus 23 q~~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~A 55 (72)
T 3jyw_9 23 QHARYDCSFCGKKTVKRGAAGIWTCSCCKKTVA 55 (72)
T ss_dssp HHSCBCCSSCCSSCBSBCSSSCBCCSSSCCCCC
T ss_pred hccCccCCCCCCceeEecCCCeEECCCCCCEEe
Confidence 445678999998777774 48999987544
Done!