Query 021224
Match_columns 316
No_of_seqs 277 out of 1412
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 14:33:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021224.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021224hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dkt_A Ring finger and CHY zin 100.0 3.6E-53 1.2E-57 363.9 12.9 133 62-205 8-142 (143)
2 2k2d_A Ring finger and CHY zin 99.9 4.7E-27 1.6E-31 183.9 1.5 71 246-316 1-71 (79)
3 2ecm_A Ring finger and CHY zin 99.3 6.9E-13 2.4E-17 93.4 4.8 52 202-254 3-54 (55)
4 2ecl_A Ring-box protein 2; RNF 99.3 1.9E-12 6.5E-17 99.7 4.9 52 203-255 25-76 (81)
5 1iym_A EL5; ring-H2 finger, ub 99.2 4.6E-12 1.6E-16 89.3 4.4 49 204-254 5-54 (55)
6 2kiz_A E3 ubiquitin-protein li 99.2 7.9E-12 2.7E-16 92.1 5.1 53 201-255 11-63 (69)
7 2ep4_A Ring finger protein 24; 99.2 1E-11 3.5E-16 92.7 5.1 55 200-256 11-65 (74)
8 1x4j_A Ring finger protein 38; 99.2 8.1E-12 2.8E-16 93.8 3.6 52 202-255 21-72 (75)
9 1v87_A Deltex protein 2; ring- 99.2 1.3E-11 4.5E-16 99.3 4.9 55 202-256 23-95 (114)
10 2l0b_A E3 ubiquitin-protein li 99.2 1.7E-11 5.7E-16 96.0 4.5 52 202-255 38-89 (91)
11 2ect_A Ring finger protein 126 99.2 2E-11 6.7E-16 92.0 4.5 52 202-255 13-64 (78)
12 1g25_A CDK-activating kinase a 99.1 3.3E-11 1.1E-15 88.1 4.8 52 204-255 3-55 (65)
13 3ng2_A RNF4, snurf, ring finge 99.1 2.7E-11 9.4E-16 89.2 4.0 53 202-255 8-63 (71)
14 2ea6_A Ring finger protein 4; 99.1 3.2E-11 1.1E-15 88.0 4.0 52 202-254 13-67 (69)
15 2xeu_A Ring finger protein 4; 99.1 4.2E-11 1.4E-15 86.1 4.1 51 204-255 3-56 (64)
16 2ct2_A Tripartite motif protei 99.1 6.8E-11 2.3E-15 90.3 5.1 53 203-255 14-68 (88)
17 1t1h_A Gspef-atpub14, armadill 99.1 1.5E-10 5.1E-15 87.1 6.2 49 202-254 6-54 (78)
18 1chc_A Equine herpes virus-1 r 99.1 6.7E-11 2.3E-15 86.7 4.1 49 203-255 4-52 (68)
19 3dpl_R Ring-box protein 1; ubi 99.0 1.6E-10 5.5E-15 94.1 5.1 34 220-254 67-100 (106)
20 2d8t_A Dactylidin, ring finger 99.0 1.2E-10 4.2E-15 86.6 3.9 49 202-255 13-61 (71)
21 2csy_A Zinc finger protein 183 99.0 1.6E-10 5.3E-15 87.9 4.2 48 202-254 13-60 (81)
22 2ysl_A Tripartite motif-contai 99.0 2.2E-10 7.6E-15 84.9 4.8 50 202-255 18-69 (73)
23 1e4u_A Transcriptional repress 99.0 2.9E-11 1E-15 93.3 -0.0 58 202-261 9-68 (78)
24 2ecy_A TNF receptor-associated 99.0 1.7E-10 5.9E-15 84.5 3.5 49 203-255 14-62 (66)
25 2djb_A Polycomb group ring fin 99.0 2.1E-10 7.4E-15 85.5 3.8 49 203-255 14-62 (72)
26 2yur_A Retinoblastoma-binding 99.0 1.7E-10 5.9E-15 86.7 2.4 50 203-256 14-65 (74)
27 2ecn_A Ring finger protein 141 99.0 5E-11 1.7E-15 88.0 -0.7 49 202-256 13-61 (70)
28 4ayc_A E3 ubiquitin-protein li 99.0 3.5E-10 1.2E-14 94.7 4.0 46 205-255 54-99 (138)
29 3lrq_A E3 ubiquitin-protein li 98.9 3.7E-10 1.3E-14 89.8 3.8 48 204-255 22-70 (100)
30 4ap4_A E3 ubiquitin ligase RNF 98.9 4.2E-10 1.4E-14 91.2 3.9 53 202-255 5-60 (133)
31 3fl2_A E3 ubiquitin-protein li 98.9 5.3E-10 1.8E-14 91.6 4.4 48 204-255 52-99 (124)
32 2ysj_A Tripartite motif-contai 98.9 7.9E-10 2.7E-14 80.1 4.5 44 202-249 18-63 (63)
33 3ztg_A E3 ubiquitin-protein li 98.9 9.3E-10 3.2E-14 85.2 4.1 48 203-254 12-61 (92)
34 2egp_A Tripartite motif-contai 98.9 3E-10 1E-14 85.2 1.1 49 203-255 11-65 (79)
35 2ecw_A Tripartite motif-contai 98.9 1.4E-09 4.8E-14 81.9 4.8 49 203-255 18-71 (85)
36 2ecj_A Tripartite motif-contai 98.9 1.3E-09 4.5E-14 77.0 3.7 43 203-249 14-58 (58)
37 2y43_A E3 ubiquitin-protein li 98.8 1.6E-09 5.3E-14 85.3 4.2 48 204-255 22-69 (99)
38 2ecv_A Tripartite motif-contai 98.8 1.6E-09 5.6E-14 81.5 3.8 49 203-255 18-71 (85)
39 2ckl_A Polycomb group ring fin 98.8 2E-09 7E-14 86.0 4.5 48 204-255 15-62 (108)
40 2d8s_A Cellular modulator of i 98.8 1.9E-09 6.4E-14 83.7 4.1 53 201-255 12-70 (80)
41 2ckl_B Ubiquitin ligase protei 98.8 2.1E-09 7.3E-14 92.0 4.6 48 204-254 54-101 (165)
42 1z6u_A NP95-like ring finger p 98.8 1E-09 3.5E-14 93.8 2.6 48 204-255 78-125 (150)
43 3l11_A E3 ubiquitin-protein li 98.8 7.8E-10 2.7E-14 89.3 1.7 48 204-255 15-62 (115)
44 4a0k_B E3 ubiquitin-protein li 98.8 4.9E-10 1.7E-14 93.1 0.5 50 204-254 48-111 (117)
45 1rmd_A RAG1; V(D)J recombinati 98.8 3.6E-09 1.2E-13 85.5 4.5 48 204-255 23-70 (116)
46 3hct_A TNF receptor-associated 98.8 3.2E-09 1.1E-13 86.4 3.6 48 204-255 18-65 (118)
47 4ap4_A E3 ubiquitin ligase RNF 98.8 4.7E-09 1.6E-13 84.9 4.6 53 202-255 70-125 (133)
48 1jm7_A BRCA1, breast cancer ty 98.7 3.7E-09 1.3E-13 84.2 3.2 47 204-254 21-69 (112)
49 2c2l_A CHIP, carboxy terminus 98.6 2.6E-08 8.9E-13 89.9 6.2 52 200-255 204-255 (281)
50 2kr4_A Ubiquitin conjugation f 98.6 2.1E-08 7.1E-13 77.9 3.9 48 203-255 13-60 (85)
51 2vje_A E3 ubiquitin-protein li 98.6 1.9E-08 6.6E-13 74.1 3.2 50 201-255 5-57 (64)
52 2kre_A Ubiquitin conjugation f 98.6 3.1E-08 1E-12 79.5 4.0 48 202-254 27-74 (100)
53 1bor_A Transcription factor PM 98.6 9.7E-09 3.3E-13 73.6 0.9 45 202-254 4-48 (56)
54 1jm7_B BARD1, BRCA1-associated 98.6 1.2E-08 4.2E-13 82.8 1.2 44 204-254 22-66 (117)
55 3knv_A TNF receptor-associated 98.6 9.8E-09 3.4E-13 87.0 0.6 47 203-253 30-76 (141)
56 1wgm_A Ubiquitin conjugation f 98.5 5.1E-08 1.8E-12 77.9 4.4 48 203-255 21-69 (98)
57 4ic3_A E3 ubiquitin-protein li 98.5 2.2E-08 7.7E-13 75.5 2.1 43 204-255 24-67 (74)
58 2vje_B MDM4 protein; proto-onc 98.5 3.3E-08 1.1E-12 72.7 2.6 49 202-255 5-56 (63)
59 3hcs_A TNF receptor-associated 98.5 4.8E-08 1.7E-12 83.8 3.3 49 203-255 17-65 (170)
60 2yu4_A E3 SUMO-protein ligase 98.5 1.5E-07 5.2E-12 74.1 5.6 46 203-252 6-59 (94)
61 2ct0_A Non-SMC element 1 homol 98.4 1.2E-07 4.2E-12 72.8 3.5 49 204-255 15-64 (74)
62 2y1n_A E3 ubiquitin-protein li 98.4 2.1E-07 7.3E-12 91.2 4.8 50 202-255 330-379 (389)
63 2f42_A STIP1 homology and U-bo 98.3 5E-07 1.7E-11 80.0 6.0 50 202-255 104-153 (179)
64 2ecg_A Baculoviral IAP repeat- 98.3 2.1E-07 7.2E-12 70.0 2.6 43 204-255 25-68 (75)
65 1wim_A KIAA0161 protein; ring 98.3 6.9E-07 2.4E-11 69.7 5.4 49 203-252 4-61 (94)
66 2ea5_A Cell growth regulator w 98.3 4.6E-07 1.6E-11 67.7 4.0 46 202-256 13-59 (68)
67 2yho_A E3 ubiquitin-protein li 98.2 4.9E-07 1.7E-11 69.3 2.2 44 204-256 18-62 (79)
68 1vyx_A ORF K3, K3RING; zinc-bi 98.1 1.5E-06 5E-11 63.9 3.0 51 200-254 2-58 (60)
69 3htk_C E3 SUMO-protein ligase 98.0 3.1E-06 1.1E-10 79.2 3.3 50 202-254 179-231 (267)
70 3k1l_B Fancl; UBC, ring, RWD, 97.9 3.2E-06 1.1E-10 82.2 1.3 53 202-254 306-372 (381)
71 3t6p_A Baculoviral IAP repeat- 97.8 5.3E-06 1.8E-10 80.0 1.8 43 204-255 295-338 (345)
72 3vk6_A E3 ubiquitin-protein li 97.6 3.4E-05 1.2E-09 62.6 4.1 49 206-257 3-51 (101)
73 2bay_A PRE-mRNA splicing facto 97.6 2.8E-05 9.5E-10 57.0 3.0 48 203-255 2-50 (61)
74 3nw0_A Non-structural maintena 95.9 0.0054 1.9E-07 56.1 4.0 49 204-255 180-229 (238)
75 2jun_A Midline-1; B-BOX, TRIM, 91.8 0.063 2.1E-06 41.6 1.8 33 204-238 3-36 (101)
76 2lbm_A Transcriptional regulat 88.7 0.57 2E-05 39.8 5.2 49 199-252 58-117 (142)
77 3a43_A HYPD, hydrogenase nicke 87.7 0.19 6.6E-06 42.2 1.7 37 280-316 68-123 (139)
78 2jrp_A Putative cytoplasmic pr 87.3 0.18 6.2E-06 39.2 1.2 16 135-152 44-59 (81)
79 2ko5_A Ring finger protein Z; 86.9 0.29 9.8E-06 39.3 2.1 45 204-255 28-73 (99)
80 2ysm_A Myeloid/lymphoid or mix 84.4 0.36 1.2E-05 38.4 1.6 81 166-251 9-103 (111)
81 2kdx_A HYPA, hydrogenase/ureas 82.9 0.49 1.7E-05 38.3 1.8 35 280-316 71-106 (119)
82 3v43_A Histone acetyltransfera 81.2 0.39 1.3E-05 38.6 0.6 75 173-251 21-111 (112)
83 2jrp_A Putative cytoplasmic pr 76.7 0.42 1.4E-05 37.2 -0.5 68 203-299 1-71 (81)
84 2kwj_A Zinc finger protein DPF 76.6 0.22 7.5E-06 40.2 -2.2 82 166-253 3-109 (114)
85 2ysm_A Myeloid/lymphoid or mix 76.1 4.3 0.00015 32.0 5.4 32 160-191 47-82 (111)
86 1weo_A Cellulose synthase, cat 74.1 5 0.00017 31.8 5.1 56 199-254 11-69 (93)
87 2jne_A Hypothetical protein YF 73.1 2.1 7.2E-05 34.5 2.7 30 160-190 60-93 (101)
88 2jne_A Hypothetical protein YF 69.2 2.2 7.5E-05 34.4 2.0 33 121-153 48-90 (101)
89 2lri_C Autoimmune regulator; Z 65.7 4.3 0.00015 29.8 2.9 44 204-252 12-59 (66)
90 4bbq_A Lysine-specific demethy 65.5 1.2 4.2E-05 35.4 -0.2 29 223-251 78-113 (117)
91 3ql9_A Transcriptional regulat 65.5 6.9 0.00024 32.6 4.5 52 199-254 52-113 (129)
92 2dkt_A Ring finger and CHY zin 63.6 4.1 0.00014 34.7 2.8 13 158-170 112-124 (143)
93 1we9_A PHD finger family prote 61.7 1.4 4.8E-05 31.6 -0.4 50 203-252 5-58 (64)
94 2i13_A AART; DNA binding, zinc 48.9 5.3 0.00018 32.9 1.0 16 243-258 161-176 (190)
95 2e6s_A E3 ubiquitin-protein li 48.8 11 0.00038 28.4 2.7 64 175-251 7-76 (77)
96 2l5u_A Chromodomain-helicase-D 46.2 12 0.00041 26.7 2.4 45 202-251 9-57 (61)
97 2k16_A Transcription initiatio 46.0 4.7 0.00016 29.6 0.2 47 204-253 18-69 (75)
98 2pv0_B DNA (cytosine-5)-methyl 43.5 17 0.00059 35.4 3.8 68 181-253 70-149 (386)
99 3j20_Y 30S ribosomal protein S 43.0 10 0.00035 26.4 1.6 9 132-140 19-27 (50)
100 3lqh_A Histone-lysine N-methyl 41.0 12 0.0004 32.7 2.0 50 205-255 3-66 (183)
101 1f62_A Transcription factor WS 40.9 17 0.00057 24.6 2.4 45 206-252 2-50 (51)
102 1mm2_A MI2-beta; PHD, zinc fin 37.7 9.2 0.00032 27.3 0.7 48 202-253 7-57 (61)
103 2kgg_A Histone demethylase jar 37.5 10 0.00034 26.2 0.8 46 205-250 3-52 (52)
104 2dmd_A Zinc finger protein 64, 37.5 26 0.0009 25.0 3.2 15 176-190 62-76 (96)
105 3i2d_A E3 SUMO-protein ligase 37.1 30 0.001 33.6 4.4 48 204-254 249-299 (371)
106 3u5n_A E3 ubiquitin-protein li 36.6 10 0.00035 33.1 0.9 46 201-252 4-54 (207)
107 3lpe_B DNA-directed RNA polyme 35.8 15 0.00053 26.6 1.6 18 123-140 3-21 (59)
108 4fo9_A E3 SUMO-protein ligase 35.6 33 0.0011 33.2 4.4 48 204-254 215-265 (360)
109 3uk3_C Zinc finger protein 217 35.0 44 0.0015 21.3 3.8 15 243-257 4-18 (57)
110 2k4x_A 30S ribosomal protein S 34.2 26 0.00088 24.8 2.6 9 132-140 18-26 (55)
111 4gut_A Lysine-specific histone 34.1 69 0.0024 33.4 6.9 81 195-290 4-103 (776)
112 3mjh_B Early endosome antigen 33.7 20 0.00069 23.3 1.8 14 244-257 6-19 (34)
113 1wep_A PHF8; structural genomi 33.4 29 0.001 25.7 2.9 50 204-254 12-65 (79)
114 1vd4_A Transcription initiatio 32.0 27 0.00094 23.6 2.4 10 177-186 38-47 (62)
115 1ryq_A DNA-directed RNA polyme 31.9 25 0.00085 26.4 2.3 23 119-141 9-32 (69)
116 3a1b_A DNA (cytosine-5)-methyl 31.7 24 0.00083 30.4 2.5 54 183-241 58-114 (159)
117 2ku3_A Bromodomain-containing 31.5 14 0.00048 27.4 0.8 52 199-251 11-65 (71)
118 1zfo_A LAsp-1; LIM domain, zin 31.0 14 0.00049 22.9 0.7 30 203-235 2-31 (31)
119 2jvx_A NF-kappa-B essential mo 30.3 16 0.00056 22.7 0.8 16 243-258 3-18 (28)
120 1wil_A KIAA1045 protein; ring 30.2 37 0.0013 26.6 3.0 32 202-238 13-47 (89)
121 2egq_A FHL1 protein; LIM domai 29.7 50 0.0017 23.4 3.6 41 204-255 15-58 (77)
122 3o36_A Transcription intermedi 28.5 18 0.00062 30.8 1.1 45 204-253 4-52 (184)
123 2lv9_A Histone-lysine N-methyl 28.4 54 0.0018 25.4 3.8 47 205-255 29-79 (98)
124 4ayb_P DNA-directed RNA polyme 28.0 29 0.001 24.3 1.9 10 160-169 22-31 (48)
125 3f6q_B LIM and senescent cell 27.8 40 0.0014 23.3 2.7 42 203-255 10-51 (72)
126 3u5c_f 40S ribosomal protein S 27.6 26 0.0009 29.4 2.0 21 132-152 118-146 (152)
127 1twf_L ABC10-alpha, DNA-direct 27.5 28 0.00095 25.9 1.9 7 163-169 47-53 (70)
128 1bbo_A Human enhancer-binding 27.4 42 0.0014 21.4 2.6 13 244-256 2-14 (57)
129 3p8b_A DNA-directed RNA polyme 27.4 27 0.00092 27.0 1.8 21 121-141 23-44 (81)
130 2yql_A PHD finger protein 21A; 27.3 6.4 0.00022 27.5 -1.6 45 202-251 7-55 (56)
131 4esj_A Type-2 restriction enzy 26.9 23 0.00077 32.8 1.5 20 132-151 34-63 (257)
132 1qxf_A GR2, 30S ribosomal prot 26.9 25 0.00085 26.2 1.4 34 120-153 6-47 (66)
133 1znf_A 31ST zinc finger from X 26.9 39 0.0013 17.8 2.1 15 244-258 2-16 (27)
134 1klr_A Zinc finger Y-chromosom 25.9 53 0.0018 17.4 2.5 16 243-258 2-17 (30)
135 2drp_A Protein (tramtrack DNA- 25.3 15 0.0005 24.6 -0.0 9 160-168 39-47 (66)
136 2ee8_A Protein ODD-skipped-rel 24.8 33 0.0011 25.0 1.9 17 242-258 44-60 (106)
137 3shb_A E3 ubiquitin-protein li 24.8 89 0.003 23.4 4.3 21 169-189 31-52 (77)
138 1qyp_A RNA polymerase II; tran 24.8 41 0.0014 23.4 2.2 35 133-168 16-50 (57)
139 4gzn_C ZFP-57, zinc finger pro 24.1 30 0.001 24.1 1.5 13 244-256 5-17 (60)
140 1ard_A Yeast transcription fac 23.9 47 0.0016 17.6 2.0 16 243-258 2-17 (29)
141 2fiy_A Protein FDHE homolog; F 23.3 57 0.0019 30.6 3.6 23 119-141 206-231 (309)
142 2m0e_A Zinc finger and BTB dom 23.2 48 0.0017 17.4 2.0 16 243-258 2-17 (29)
143 1x4l_A Skeletal muscle LIM-pro 23.2 46 0.0016 23.3 2.3 40 204-254 5-46 (72)
144 2cup_A Skeletal muscle LIM-pro 23.0 25 0.00085 26.4 0.9 32 202-235 64-95 (101)
145 3m62_A Ubiquitin conjugation f 22.9 65 0.0022 35.0 4.3 49 201-254 888-937 (968)
146 3v2d_5 50S ribosomal protein L 22.7 32 0.0011 24.9 1.3 29 281-314 29-57 (60)
147 1weu_A Inhibitor of growth fam 22.1 37 0.0013 26.5 1.7 46 203-254 35-87 (91)
148 1p7a_A BF3, BKLF, kruppel-like 21.9 47 0.0016 19.1 1.9 16 243-258 11-26 (37)
149 2ayj_A 50S ribosomal protein L 21.9 1.1E+02 0.0037 22.1 4.0 25 117-141 15-42 (56)
150 2l43_A N-teminal domain from h 21.9 29 0.001 26.6 1.1 50 203-253 24-76 (88)
151 2yqq_A Zinc finger HIT domain- 21.5 45 0.0015 23.9 1.9 17 134-151 14-30 (56)
152 1x68_A FHL5 protein; four-and- 21.3 91 0.0031 22.0 3.7 68 204-306 5-74 (76)
153 6rxn_A Rubredoxin; electron tr 20.9 43 0.0015 23.0 1.6 13 142-154 2-15 (46)
154 3u6p_A Formamidopyrimidine-DNA 20.9 43 0.0015 30.7 2.2 20 132-151 245-272 (273)
155 1vq8_Z 50S ribosomal protein L 20.7 33 0.0011 26.3 1.2 32 132-174 27-58 (83)
156 1paa_A Yeast transcription fac 20.6 55 0.0019 17.6 1.9 16 243-258 2-17 (30)
157 2yt5_A Metal-response element- 20.5 58 0.002 22.9 2.4 25 143-167 5-29 (66)
158 2zjr_Z 50S ribosomal protein L 20.2 49 0.0017 23.9 1.9 29 281-314 29-57 (60)
159 2v3b_B Rubredoxin 2, rubredoxi 20.1 57 0.002 23.0 2.2 12 142-153 1-12 (55)
160 2xzf_A Formamidopyrimidine-DNA 20.0 46 0.0016 30.4 2.2 20 132-151 242-269 (271)
161 2elr_A Zinc finger protein 406 20.0 60 0.002 18.4 2.0 16 243-258 9-24 (36)
No 1
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=100.00 E-value=3.6e-53 Score=363.94 Aligned_cols=133 Identities=41% Similarity=1.031 Sum_probs=126.2
Q ss_pred hhhccCCCccCCcccccCcceEcCCCCCeecChhhHhhhccCcCcccccCCCCCccccceeecCCcCccc--cCCCCCCC
Q 021224 62 ELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQ--KQVCVNCG 139 (316)
Q Consensus 62 ~~~~~~~~~~gC~HY~r~c~ik~pCC~~~Y~Cr~CHde~~~~~~~~~~~~H~~~R~~v~~v~C~~C~~~Q--~~~C~~Cg 139 (316)
..+|++.+++||+||+|+|+|+||||++|||||+||||+ ++|+++|+.+++|+||.|+++| ++.|++||
T Consensus 8 ~~~~~~~~~~gC~HY~r~~~lr~pCC~k~y~Cr~CHde~---------~dH~l~r~~~~~vlCg~C~~~q~~~~~C~~Cg 78 (143)
T 2dkt_A 8 GVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTN---------EDHQLDRFKVKEVQCINCEKLQHAQQTCEDCS 78 (143)
T ss_dssp CCCCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHT---------SSSCCCSSSCCCEEESSSCCEECSCSBCSSSC
T ss_pred cccccccCcCCCcccCCCeeEECCCCCCccchhhhhccc---------cccccchhccceeeecccCccccccCcCCCCC
Confidence 455788889999999999999999999999999999996 3799999999999999999999 88999999
Q ss_pred CccceeecCccccccCCCCCCeeecCCCCcceecCCCCeeeccCcccceeccccccccccCCCCCC
Q 021224 140 VCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHH 205 (316)
Q Consensus 140 ~~f~~YfC~~C~l~ddd~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~E~~~~~ 205 (316)
+.||+|||+|||||| ++|+||||++|||||+|++++||||++||+||+++|+++|+|+|+++++
T Consensus 79 ~~f~~Y~C~~C~l~d--~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~e~~~~s 142 (143)
T 2dkt_A 79 TLFGEYYCSICHLFD--KDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIESGPSS 142 (143)
T ss_dssp CBSCSEECSSSCCEE--CSSSEEEETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCSCCCSCC
T ss_pred ccceeeEeceeeccc--CCCceecCCCCCceeccCCcCcEECCcCCeeeccccCcCcccCccCccC
Confidence 999999999999997 4699999999999999999999999999999999999999999998864
No 2
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=99.92 E-value=4.7e-27 Score=183.85 Aligned_cols=71 Identities=48% Similarity=0.832 Sum_probs=38.1
Q ss_pred CCCCCccccchhHHHHHhHHHHHcCCCChhhhcCcceEEcCCCCCCccccceeeeecCCCCCCccccccCC
Q 021224 246 CPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG 316 (316)
Q Consensus 246 CPiCrks~~d~~~~~~~lD~~ia~~pmP~ey~~~~~~IlCnDC~~~s~~~fH~lg~kC~~C~SyNT~~~~~ 316 (316)
||+|+|++.||+.+|++||++|+++|||++|++++++|+||||+++|.++||||||||+.|+||||++++|
T Consensus 1 ~~~c~ks~~dm~~~~~~lD~~ia~~pmP~~y~~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNTr~~~G 71 (79)
T 2k2d_A 1 GSHMMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGG 71 (79)
T ss_dssp --------------------------------CCEEEEEESSSCCEEEEECCTTCCCCTTTSCCCEEESCC
T ss_pred CCcccccHHHHHHHHHHHHHHHHhCCCCHHHhCCEeEEECCCCCCCccCCceeecccCcCCCCcCeEecCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999976
No 3
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.34 E-value=6.9e-13 Score=93.42 Aligned_cols=52 Identities=38% Similarity=0.911 Sum_probs=44.9
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCcccc
Q 021224 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 254 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~ 254 (316)
+.+..||||++.+.++...+++++|||.||..|+.+|+... .+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 45688999999876666678899999999999999999864 89999998764
No 4
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.9e-12 Score=99.67 Aligned_cols=52 Identities=19% Similarity=0.436 Sum_probs=39.4
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
++..||||++++......+++++|||.||.+||.+|+.. +.+||+||+++..
T Consensus 25 ~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 25 VMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp TTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred hhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 356688888864443333344469999999999999985 4799999998763
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.24 E-value=4.6e-12 Score=89.31 Aligned_cols=49 Identities=33% Similarity=0.790 Sum_probs=41.0
Q ss_pred CCCCcccccccccCCceeEEcC-CCCccchhHHHHHHhcCCCCCCCCCcccc
Q 021224 204 HHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREHHQYACPICSKSVC 254 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~~v~Lp-CGH~fH~~Ci~~wl~~~~~~CPiCrks~~ 254 (316)
+..|+||++.+ ...+.++.++ |||.||..|+.+|++. +.+||+||+++.
T Consensus 5 ~~~C~IC~~~~-~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAEL-EDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCC-CTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCcCccCCccc-cCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 56899999964 4455677887 9999999999999975 589999998764
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.23 E-value=7.9e-12 Score=92.15 Aligned_cols=53 Identities=28% Similarity=0.659 Sum_probs=44.3
Q ss_pred CCCCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 201 GAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 201 ~~~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
...+..|+||++. +.....++.+||||.||..||.+|+.. +.+||+||+.+..
T Consensus 11 ~~~~~~C~IC~~~-~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSI-LEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBC-CCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCcc-ccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 3456789999996 455567889999999999999999985 4789999998764
No 7
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1e-11 Score=92.72 Aligned_cols=55 Identities=35% Similarity=0.800 Sum_probs=45.8
Q ss_pred CCCCCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccch
Q 021224 200 EGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDM 256 (316)
Q Consensus 200 E~~~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d~ 256 (316)
+...+..|+||++. +.....+++|||||.||..||.+|+.. +.+||+||+++..+
T Consensus 11 ~~~~~~~C~IC~~~-~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 11 ELNLHELCAVCLED-FKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCSCBCSSSCCB-CCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSC
T ss_pred cCCCCCCCcCCCcc-cCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCcccccc
Confidence 44557899999996 555567788899999999999999986 46999999998764
No 8
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=8.1e-12 Score=93.82 Aligned_cols=52 Identities=35% Similarity=0.715 Sum_probs=44.0
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
.....|+||++. +.....++.|||||.||..||.+|+.. +.+||+||+++..
T Consensus 21 ~~~~~C~IC~~~-~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCD-FESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEE-CCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcc-cCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 346789999996 555567889999999999999999985 5799999998864
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.18 E-value=1.3e-11 Score=99.31 Aligned_cols=55 Identities=27% Similarity=0.474 Sum_probs=42.1
Q ss_pred CCCCCCcccccccccCC--------------ceeEEcCCCCccchhHHHHHHhc----CCCCCCCCCccccch
Q 021224 202 AMHHDCPVCCEYLFETR--------------QDVIVLPCGHTIHKNCLKEMREH----HQYACPICSKSVCDM 256 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~--------------~~~v~LpCGH~fH~~Ci~~wl~~----~~~~CPiCrks~~d~ 256 (316)
..+..||||++++.... ..+++++|||.||..||.+|+.. .+.+||+||+.+...
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 34578999999764321 23457899999999999999952 357899999988753
No 10
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.17 E-value=1.7e-11 Score=96.02 Aligned_cols=52 Identities=27% Similarity=0.662 Sum_probs=43.5
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
..+..|+||++. +.....++.|||||.||..||.+|+.. +.+||+||+++..
T Consensus 38 ~~~~~C~IC~~~-~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSE-YVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEE-CCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred CCCCCCcccChh-hcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 346789999996 455567888999999999999999985 5799999998753
No 11
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.16 E-value=2e-11 Score=92.02 Aligned_cols=52 Identities=35% Similarity=0.802 Sum_probs=43.7
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
..+..|+||++. +.....+++|+|||.||..||.+|+.. +.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~-~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKED-YALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSC-CCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCC
T ss_pred CCCCCCeeCCcc-ccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCC
Confidence 346789999996 555567788999999999999999975 5899999998875
No 12
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.14 E-value=3.3e-11 Score=88.12 Aligned_cols=52 Identities=23% Similarity=0.560 Sum_probs=41.9
Q ss_pred CCCCccccc-ccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 204 HHDCPVCCE-YLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE-~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
+..||||++ .+.......++++|||+||..|+.+|+.....+||+||+++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 567999999 5544434446789999999999999976556789999998864
No 13
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.13 E-value=2.7e-11 Score=89.19 Aligned_cols=53 Identities=25% Similarity=0.664 Sum_probs=42.9
Q ss_pred CCCCCCcccccccccC---CceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 202 AMHHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s---~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
..+..||||++.+.+. ...++.++|||.||..|+.+|++. +.+||+||+++..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccCh
Confidence 4467899999975442 244588999999999999999985 4799999998864
No 14
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=3.2e-11 Score=87.99 Aligned_cols=52 Identities=25% Similarity=0.674 Sum_probs=42.1
Q ss_pred CCCCCCcccccccccC---CceeEEcCCCCccchhHHHHHHhcCCCCCCCCCcccc
Q 021224 202 AMHHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 254 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s---~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~ 254 (316)
.....||||++.+.+. ...+++++|||.||..||.+|+.. +.+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccC
Confidence 3467899999975432 234588999999999999999985 579999999875
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.11 E-value=4.2e-11 Score=86.15 Aligned_cols=51 Identities=25% Similarity=0.706 Sum_probs=41.8
Q ss_pred CCCCccccccccc---CCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 204 HHDCPVCCEYLFE---TRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~---s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
+..||||++.+.+ +.+.++.++|||.||..|+.+|++. +.+||+||+++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCc
Confidence 5689999997543 1244588999999999999999985 5799999998864
No 16
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=6.8e-11 Score=90.32 Aligned_cols=53 Identities=34% Similarity=0.706 Sum_probs=43.1
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcC--CCCCCCCCccccc
Q 021224 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH--QYACPICSKSVCD 255 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~--~~~CPiCrks~~d 255 (316)
....||||++.+.++...+++++|||.||..|+.+|+... ..+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 3578999999755444447889999999999999999753 4789999998764
No 17
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.08 E-value=1.5e-10 Score=87.14 Aligned_cols=49 Identities=16% Similarity=0.478 Sum_probs=41.3
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCcccc
Q 021224 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 254 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~ 254 (316)
..+..||||++. +. ++++++|||+||+.||.+|+..+..+||+||+++.
T Consensus 6 ~~~~~C~IC~~~-~~---~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 6 PEYFRCPISLEL-MK---DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSSCTTTSCC-CS---SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred cccCCCCCcccc-cc---CCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 346789999995 44 46778999999999999999865689999999885
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.08 E-value=6.7e-11 Score=86.73 Aligned_cols=49 Identities=27% Similarity=0.655 Sum_probs=41.1
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
.+..||||++.+ . .+++.+||||.||..|+.+|+.. +.+||+||+++..
T Consensus 4 ~~~~C~IC~~~~-~--~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDP-S--NYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCC-C--SCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccc-c--CCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 357899999963 3 25689999999999999999975 4799999998874
No 19
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.04 E-value=1.6e-10 Score=94.10 Aligned_cols=34 Identities=21% Similarity=0.457 Sum_probs=30.1
Q ss_pred eeEEcCCCCccchhHHHHHHhcCCCCCCCCCcccc
Q 021224 220 DVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 254 (316)
Q Consensus 220 ~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~ 254 (316)
.++.++|||.||..||.+||.. +.+||+||+++.
T Consensus 67 ~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 67 TVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred eEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 4677899999999999999985 689999999864
No 20
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.2e-10 Score=86.57 Aligned_cols=49 Identities=20% Similarity=0.529 Sum_probs=40.7
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
..+..||||++.+ . .++.++|||.||..||.+|+.. ..+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~-~---~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTC-V---HPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBC-S---SEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCCCCccCCccc-C---CCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 3467899999953 3 3578899999999999999975 5899999998874
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.6e-10 Score=87.94 Aligned_cols=48 Identities=23% Similarity=0.544 Sum_probs=40.2
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCcccc
Q 021224 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 254 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~ 254 (316)
.....||||++. +. .+++++|||+||..|+.+|+.. ..+||+||+++.
T Consensus 13 ~~~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQA-FQ---NPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSB-CC---SEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC
T ss_pred CCCCCCcCCCch-hc---CeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc
Confidence 345689999996 43 3567999999999999999975 589999999986
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=2.2e-10 Score=84.86 Aligned_cols=50 Identities=26% Similarity=0.775 Sum_probs=40.6
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhc--CCCCCCCCCccccc
Q 021224 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPICSKSVCD 255 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~--~~~~CPiCrks~~d 255 (316)
..+..||||++. +. ++++++|||.||..|+..|+.. ...+||+||+.+..
T Consensus 18 ~~~~~C~IC~~~-~~---~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDI-LQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSB-CS---SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcc-cC---CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 346789999995 43 4677899999999999999962 45789999998763
No 23
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.02 E-value=2.9e-11 Score=93.29 Aligned_cols=58 Identities=29% Similarity=0.646 Sum_probs=43.9
Q ss_pred CCCCCCcccccccccCCceeEEcC--CCCccchhHHHHHHhcCCCCCCCCCccccchhHHHH
Q 021224 202 AMHHDCPVCCEYLFETRQDVIVLP--CGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWE 261 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~~v~Lp--CGH~fH~~Ci~~wl~~~~~~CPiCrks~~d~~~~~~ 261 (316)
..+..||||+|++.. .+++++| |||.|++.|+..++....+.||+||+++......|+
T Consensus 9 ~~~~~CpICle~~~~--~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~ 68 (78)
T 1e4u_A 9 EDPVECPLCMEPLEI--DDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYK 68 (78)
T ss_dssp CCCCBCTTTCCBCCT--TTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCC
T ss_pred ccCCcCCccCccCcc--ccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhc
Confidence 346789999996432 2344555 999999999999876566899999999987554443
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.7e-10 Score=84.46 Aligned_cols=49 Identities=18% Similarity=0.477 Sum_probs=40.0
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
.+..||||++. +. +++.++|||.||..|+.+|+.....+||+||+++..
T Consensus 14 ~~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLV-LC---SPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCE-ES---SCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChH-hc---CeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 35789999995 43 345589999999999999996556789999998864
No 25
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=2.1e-10 Score=85.47 Aligned_cols=49 Identities=27% Similarity=0.535 Sum_probs=39.5
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
.+..||||++.+.+ ++++++|||.||..||.+|++. +.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCS
T ss_pred CCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCc
Confidence 35789999995432 3444599999999999999975 5899999998864
No 26
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.96 E-value=1.7e-10 Score=86.70 Aligned_cols=50 Identities=22% Similarity=0.646 Sum_probs=40.1
Q ss_pred CCCCCcccccccccCCceeEEcC-CCCccchhHHHHHHhcC-CCCCCCCCccccch
Q 021224 203 MHHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREHH-QYACPICSKSVCDM 256 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~~v~Lp-CGH~fH~~Ci~~wl~~~-~~~CPiCrks~~d~ 256 (316)
.+..||||++. +. ++++++ |||+||..||..|+... ..+||+||+.+...
T Consensus 14 ~~~~C~IC~~~-~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 14 DELLCLICKDI-MT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp GGGSCSSSCCC-CT---TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCCcCCChH-Hh---CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 35789999995 44 356799 99999999999999753 36899999986643
No 27
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=5e-11 Score=88.04 Aligned_cols=49 Identities=24% Similarity=0.766 Sum_probs=40.7
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccch
Q 021224 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDM 256 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d~ 256 (316)
.....||||++. +. + +++||||.||..|+.+|+. ...+||+||+.+...
T Consensus 13 ~~~~~C~IC~~~-~~---~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 13 TDEEECCICMDG-RA---D-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCSSSCCS-CC---S-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCC
T ss_pred CCCCCCeeCCcC-cc---C-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCC
Confidence 346789999995 33 2 7899999999999999998 468999999888754
No 28
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.95 E-value=3.5e-10 Score=94.68 Aligned_cols=46 Identities=33% Similarity=0.889 Sum_probs=39.3
Q ss_pred CCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 205 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 205 ~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
..||||++. +. +++++||||+||..||..|+.. +.+||+||+++..
T Consensus 54 ~~C~iC~~~-~~---~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEY-FI---EAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSB-CS---SEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCC
T ss_pred CCCcccCcc-cC---CceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCC
Confidence 469999995 43 4678999999999999999975 5889999999864
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.95 E-value=3.7e-10 Score=89.79 Aligned_cols=48 Identities=19% Similarity=0.477 Sum_probs=39.7
Q ss_pred CCCCcccccccccCCceeEE-cCCCCccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 204 HHDCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~~v~-LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
+..||||++. +. +++. ++|||.||..||.+|+.....+||+||+++..
T Consensus 22 ~~~C~IC~~~-~~---~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEK-LR---DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSB-CS---SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCcc-cc---CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 4679999995 44 3455 99999999999999998654789999999863
No 30
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.94 E-value=4.2e-10 Score=91.24 Aligned_cols=53 Identities=25% Similarity=0.664 Sum_probs=42.6
Q ss_pred CCCCCCcccccccccC---CceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 202 AMHHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s---~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
+.+..||||++.+.+. ++.++.++|||+||..||.+|++. +.+||+||+.+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcc
Confidence 3467899999975432 244589999999999999999985 5799999998864
No 31
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.93 E-value=5.3e-10 Score=91.55 Aligned_cols=48 Identities=25% Similarity=0.598 Sum_probs=40.5
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 204 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
+..||||++. +. +++++||||+||..||..|+.....+||+||+++..
T Consensus 52 ~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQEL-VF---RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSB-CS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChH-Hc---CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4579999995 44 467789999999999999998656799999998864
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=7.9e-10 Score=80.06 Aligned_cols=44 Identities=25% Similarity=0.850 Sum_probs=35.9
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhc--CCCCCCCC
Q 021224 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPIC 249 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~--~~~~CPiC 249 (316)
..+..||||++. +. ++++++|||.||..||.+|+.. ...+||+|
T Consensus 18 ~~~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDI-LQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSB-CS---SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCch-hC---CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 346789999995 44 3677899999999999999974 45789998
No 33
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.89 E-value=9.3e-10 Score=85.22 Aligned_cols=48 Identities=23% Similarity=0.690 Sum_probs=39.4
Q ss_pred CCCCCcccccccccCCceeEEcC-CCCccchhHHHHHHhc-CCCCCCCCCcccc
Q 021224 203 MHHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREH-HQYACPICSKSVC 254 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~~v~Lp-CGH~fH~~Ci~~wl~~-~~~~CPiCrks~~ 254 (316)
.+..||||++. +. +++++| |||+|+..||..|+.. ....||+||+++.
T Consensus 12 ~~~~C~IC~~~-~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDI-MT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEE-CS---SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChh-hc---CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 35789999995 44 467889 9999999999999864 3478999999973
No 34
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.88 E-value=3e-10 Score=85.19 Aligned_cols=49 Identities=27% Similarity=0.756 Sum_probs=40.1
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcC------CCCCCCCCccccc
Q 021224 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH------QYACPICSKSVCD 255 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~------~~~CPiCrks~~d 255 (316)
.+..||||++. +. ++++++|||+||..|+..|+... ..+||+||..+..
T Consensus 11 ~~~~C~IC~~~-~~---~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLEL-LT---EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEE-CS---SCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcc-cC---CeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 35789999995 44 35678999999999999998752 5789999998864
No 35
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.88 E-value=1.4e-09 Score=81.92 Aligned_cols=49 Identities=22% Similarity=0.619 Sum_probs=40.1
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcC-----CCCCCCCCccccc
Q 021224 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH-----QYACPICSKSVCD 255 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~-----~~~CPiCrks~~d 255 (316)
.+..||||++. +. .+++++|||.||..|+..|+... ...||+||+.+..
T Consensus 18 ~~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLEL-LK---EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSC-CS---SCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChh-hC---cceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 35789999995 43 35689999999999999998752 5789999998763
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=1.3e-09 Score=77.04 Aligned_cols=43 Identities=35% Similarity=1.061 Sum_probs=34.8
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhc--CCCCCCCC
Q 021224 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPIC 249 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~--~~~~CPiC 249 (316)
....||||++.+ . ++++++|||.||..||.+|+.. ...+||+|
T Consensus 14 ~~~~C~IC~~~~-~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYL-K---EPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBC-S---SCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCccc-C---ccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 357899999963 3 2467899999999999999653 45789998
No 37
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.85 E-value=1.6e-09 Score=85.33 Aligned_cols=48 Identities=27% Similarity=0.751 Sum_probs=38.6
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 204 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
+..||||++. +.. ++++++|||+||..|+..|+.. +.+||+||..+..
T Consensus 22 ~~~C~IC~~~-~~~--p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEY-FNI--AMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSB-CSS--EEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG
T ss_pred CCCcccCChh-hCC--cCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCCh
Confidence 4679999995 432 3344499999999999999984 5899999998873
No 38
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.6e-09 Score=81.55 Aligned_cols=49 Identities=29% Similarity=0.745 Sum_probs=40.1
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhc-----CCCCCCCCCccccc
Q 021224 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-----HQYACPICSKSVCD 255 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~-----~~~~CPiCrks~~d 255 (316)
....||||++. +. +++.++|||.||..|+..|+.. ....||+||..+..
T Consensus 18 ~~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLEL-LT---QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSC-CS---SCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcc-cC---CceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 46789999995 43 3567899999999999999875 25789999998863
No 39
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.83 E-value=2e-09 Score=86.05 Aligned_cols=48 Identities=31% Similarity=0.714 Sum_probs=39.1
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 204 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
+..||||++. +. +++.+++|||+||..|+..|+.. +.+||+||+.+..
T Consensus 15 ~~~C~IC~~~-~~--~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGY-FI--DATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSB-CS--SEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCS
T ss_pred cCCCccCChH-Hh--CcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccc
Confidence 5689999995 43 24444599999999999999985 5899999998863
No 40
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=1.9e-09 Score=83.66 Aligned_cols=53 Identities=19% Similarity=0.511 Sum_probs=41.4
Q ss_pred CCCCCCCcccccccccCCceeEEcCCC-----CccchhHHHHHHhcC-CCCCCCCCccccc
Q 021224 201 GAMHHDCPVCCEYLFETRQDVIVLPCG-----HTIHKNCLKEMREHH-QYACPICSKSVCD 255 (316)
Q Consensus 201 ~~~~~~CPIClE~lf~s~~~~v~LpCG-----H~fH~~Ci~~wl~~~-~~~CPiCrks~~d 255 (316)
...+..|+||++. ++... .+++||+ |.||..||++||... ..+||+||..+..
T Consensus 12 ~~~~~~C~IC~~~-~~~~~-~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCE-GDDES-PLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCC-CCSSS-CEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCcc-ccCCC-eeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 3456789999986 44343 4579996 999999999999763 3689999998863
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.82 E-value=2.1e-09 Score=92.03 Aligned_cols=48 Identities=21% Similarity=0.613 Sum_probs=39.4
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCcccc
Q 021224 204 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 254 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~ 254 (316)
+..||||++. +.. ++.+++|||+||..||..|+......||+||..+.
T Consensus 54 ~~~C~IC~~~-~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 54 ELMCPICLDM-LKN--TMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHBCTTTSSB-CSS--EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCcccChH-hhC--cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 3489999995 442 45556999999999999999865688999999885
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.82 E-value=1e-09 Score=93.81 Aligned_cols=48 Identities=23% Similarity=0.607 Sum_probs=40.5
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 204 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
+..||||++. +. +++++||||+||..||..|+.....+||+||..+..
T Consensus 78 ~~~C~IC~~~-~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 78 SFMCVCCQEL-VY---QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HTBCTTTSSB-CS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCEeecCChh-hc---CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 4679999995 44 466799999999999999998665789999998874
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.82 E-value=7.8e-10 Score=89.31 Aligned_cols=48 Identities=31% Similarity=0.840 Sum_probs=40.4
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 204 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
+..||||++. +. .+++|+|||+||..||..|+.....+||+||+.+..
T Consensus 15 ~~~C~iC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEI-LV---EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSB-CS---SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcc-cC---ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4679999995 43 367789999999999999997656899999998863
No 44
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.82 E-value=4.9e-10 Score=93.09 Aligned_cols=50 Identities=18% Similarity=0.493 Sum_probs=0.5
Q ss_pred CCCCcccccccccC--------------CceeEEcCCCCccchhHHHHHHhcCCCCCCCCCcccc
Q 021224 204 HHDCPVCCEYLFET--------------RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 254 (316)
Q Consensus 204 ~~~CPIClE~lf~s--------------~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~ 254 (316)
++.|+||++.+.+. ...++.++|||.||..||.+||.. +.+||+||+++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 56899998865321 123445699999999999999985 588999999864
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.78 E-value=3.6e-09 Score=85.47 Aligned_cols=48 Identities=19% Similarity=0.475 Sum_probs=40.4
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 204 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
+..||||++. +. +++.++|||+||..||.+|+.....+||+||+++..
T Consensus 23 ~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHI-LA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcH-hc---CcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 4679999995 43 356789999999999999998656789999999874
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.76 E-value=3.2e-09 Score=86.41 Aligned_cols=48 Identities=23% Similarity=0.674 Sum_probs=40.4
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 204 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
+..||||++. +. .++.++|||+||..||.+|+.....+||+||+++..
T Consensus 18 ~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 18 KYECPICLMA-LR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCcCChh-hc---CeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 5689999985 43 357789999999999999998655699999999875
No 47
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.76 E-value=4.7e-09 Score=84.95 Aligned_cols=53 Identities=25% Similarity=0.664 Sum_probs=42.6
Q ss_pred CCCCCCcccccccccC---CceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 202 AMHHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s---~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
.....||||++.+... ...++.++|||.||..|+.+|++. +.+||+||+++..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCCh
Confidence 4467899999965331 234578999999999999999985 4799999998874
No 48
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.74 E-value=3.7e-09 Score=84.18 Aligned_cols=47 Identities=23% Similarity=0.754 Sum_probs=38.2
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcC--CCCCCCCCcccc
Q 021224 204 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH--QYACPICSKSVC 254 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~--~~~CPiCrks~~ 254 (316)
...||||++. +. .++.++|||.||..|+..|+... ..+||+||.++.
T Consensus 21 ~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLEL-IK---EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCC-CS---SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCcccChh-hc---CeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 4579999995 43 35568999999999999999743 258999998876
No 49
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.65 E-value=2.6e-08 Score=89.92 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=42.9
Q ss_pred CCCCCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 200 EGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 200 E~~~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
+......||||++ ++. +++++||||+|++.||..|+.....+||+||.++..
T Consensus 204 ~~~~~~~c~i~~~-~~~---dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 204 DIPDYLCGKISFE-LMR---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCCSTTBCTTTCS-BCS---SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCCcccCCcCcCC-Hhc---CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 3355788999999 455 578899999999999999998655669999998863
No 50
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.61 E-value=2.1e-08 Score=77.90 Aligned_cols=48 Identities=15% Similarity=0.231 Sum_probs=41.2
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
.+..||||++ ++. ++++++|||+|.+.||..|+.. +.+||+||.++..
T Consensus 13 ~~~~CpI~~~-~m~---dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDT-LMT---DPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCS-BCS---SEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred hheECcccCc-hhc---CCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCCh
Confidence 4678999999 454 5788999999999999999985 5899999998863
No 51
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.60 E-value=1.9e-08 Score=74.15 Aligned_cols=50 Identities=18% Similarity=0.485 Sum_probs=39.7
Q ss_pred CCCCCCCcccccccccCCceeEEc--CCCCc-cchhHHHHHHhcCCCCCCCCCccccc
Q 021224 201 GAMHHDCPVCCEYLFETRQDVIVL--PCGHT-IHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 201 ~~~~~~CPIClE~lf~s~~~~v~L--pCGH~-fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
...+..|+||++.. .+++++ ||||. |+..|+..|+.. +..||+||+++..
T Consensus 5 ~~~~~~C~IC~~~~----~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 57 (64)
T 2vje_A 5 LNAIEPCVICQGRP----KNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQM 57 (64)
T ss_dssp CGGGSCCTTTSSSC----SCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCCE
T ss_pred CCCcCCCCcCCCCC----CCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchhc
Confidence 34567899999852 245555 99999 899999999874 5789999998864
No 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.58 E-value=3.1e-08 Score=79.50 Aligned_cols=48 Identities=15% Similarity=0.231 Sum_probs=41.2
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCcccc
Q 021224 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 254 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~ 254 (316)
..+..||||++ ++. +++++||||+|.+.||..|+.. +.+||+||.++.
T Consensus 27 p~~~~CpI~~~-~m~---dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~ 74 (100)
T 2kre_A 27 PDEFRDPLMDT-LMT---DPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLT 74 (100)
T ss_dssp STTTBCTTTCS-BCS---SEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCC
T ss_pred cHhhCCcCccC-ccc---CCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCC
Confidence 34678999999 455 5788999999999999999984 689999999886
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.57 E-value=9.7e-09 Score=73.55 Aligned_cols=45 Identities=29% Similarity=0.566 Sum_probs=36.7
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCcccc
Q 021224 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 254 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~ 254 (316)
.....||||++. +. .+++|||||+||..|+..| ..+||+||+.+.
T Consensus 4 ~~~~~C~IC~~~-~~---~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAE-AK---CPKLLPCLHTLCSGCLEAS----GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSS-CB---CCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSS
T ss_pred ccCCCceEeCCc-cC---CeEEcCCCCcccHHHHccC----CCCCCcCCcEee
Confidence 346789999985 44 3578999999999999884 468999999875
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.56 E-value=1.2e-08 Score=82.81 Aligned_cols=44 Identities=23% Similarity=0.663 Sum_probs=37.2
Q ss_pred CCCCcccccccccCCceeEEc-CCCCccchhHHHHHHhcCCCCCCCCCcccc
Q 021224 204 HHDCPVCCEYLFETRQDVIVL-PCGHTIHKNCLKEMREHHQYACPICSKSVC 254 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~~v~L-pCGH~fH~~Ci~~wl~~~~~~CPiCrks~~ 254 (316)
+..||||++. +. .++++ +|||+||..||..|+. ..||+||+++.
T Consensus 22 ~~~C~IC~~~-~~---~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNI-LR---EPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSC-CS---SCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred CCCCCCCChH-hh---CccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCc
Confidence 5789999995 44 35566 9999999999999986 78999998885
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.56 E-value=9.8e-09 Score=86.96 Aligned_cols=47 Identities=19% Similarity=0.448 Sum_probs=39.1
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccc
Q 021224 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV 253 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~ 253 (316)
.+..||||++. +. +++.++|||.||..||.+|+.....+||+||+++
T Consensus 30 ~~~~C~IC~~~-~~---~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 30 AKYLCSACRNV-LR---RPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGGBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCcCCCCCChh-hc---CcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 35789999995 43 3467899999999999999986656899999865
No 56
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.54 E-value=5.1e-08 Score=77.92 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=41.2
Q ss_pred CCCCCcccccccccCCceeEEcCCC-CccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 203 MHHDCPVCCEYLFETRQDVIVLPCG-HTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~~v~LpCG-H~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
.+..||||++ ++. ++|+++|| |+|.+.||..|+.. +.+||+||.++..
T Consensus 21 ~~~~CpI~~~-~m~---dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMST-LMC---DPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCS-BCS---SEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCT
T ss_pred HhcCCcCccc-ccc---CCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCCh
Confidence 4678999999 455 57889999 99999999999985 6899999998863
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.53 E-value=2.2e-08 Score=75.48 Aligned_cols=43 Identities=26% Similarity=0.738 Sum_probs=36.5
Q ss_pred CCCCcccccccccCCceeEEcCCCCc-cchhHHHHHHhcCCCCCCCCCccccc
Q 021224 204 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~~v~LpCGH~-fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
+..|+||++. +. +++.+||||. |+..|+..| .+||+||+.+..
T Consensus 24 ~~~C~iC~~~-~~---~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDR-NI---AIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSS-BC---CEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CCCCCCCCCC-CC---CEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 4679999985 32 5788999999 999999998 579999998875
No 58
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.52 E-value=3.3e-08 Score=72.69 Aligned_cols=49 Identities=22% Similarity=0.570 Sum_probs=38.6
Q ss_pred CCCCCCcccccccccCCceeEEc--CCCCc-cchhHHHHHHhcCCCCCCCCCccccc
Q 021224 202 AMHHDCPVCCEYLFETRQDVIVL--PCGHT-IHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~~v~L--pCGH~-fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
.....|+||++.. .+.+++ ||||. |+..|+..|... +.+||+||+++..
T Consensus 5 ~~~~~C~IC~~~~----~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRP----RDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSB----SCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcC----CCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhc
Confidence 3467899999852 234444 99998 999999999864 4789999998864
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.49 E-value=4.8e-08 Score=83.79 Aligned_cols=49 Identities=22% Similarity=0.651 Sum_probs=40.5
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
.+..||||++. +. +++.++|||+|+..|+.+|+.....+||+||.++..
T Consensus 17 ~~~~C~IC~~~-~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 17 SKYECPICLMA-LR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GGGBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCChh-hc---CcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 35689999995 43 356789999999999999997655699999998875
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.48 E-value=1.5e-07 Score=74.08 Aligned_cols=46 Identities=28% Similarity=0.608 Sum_probs=37.3
Q ss_pred CCCCCcccccccccCCceeEEcC-CCCccchhHHHHHHhcC-----CCCCCC--CCcc
Q 021224 203 MHHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREHH-----QYACPI--CSKS 252 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~~v~Lp-CGH~fH~~Ci~~wl~~~-----~~~CPi--Crks 252 (316)
.+..||||++ +|. ++++++ |||+|.+.||.+|+... ..+||+ |++.
T Consensus 6 ~~~~CPI~~~-~~~---dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKE-EMK---KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCS-BCS---SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCc-hhc---CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4578999999 455 467775 99999999999999742 368999 9866
No 61
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.42 E-value=1.2e-07 Score=72.78 Aligned_cols=49 Identities=18% Similarity=0.453 Sum_probs=38.3
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcC-CCCCCCCCccccc
Q 021224 204 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH-QYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~-~~~CPiCrks~~d 255 (316)
...|+||.+. +... ..-..|+|.||..||.+||+.. +.+||+||.++..
T Consensus 15 i~~C~IC~~~-i~~g--~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSL-LIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCB-CSSS--EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhH-cccC--CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 4689999995 4432 3344899999999999999753 2689999998864
No 62
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.37 E-value=2.1e-07 Score=91.23 Aligned_cols=50 Identities=30% Similarity=0.729 Sum_probs=41.4
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
.....|+||++.+ ..++.+||||.||..|+..|+.....+||+||.++..
T Consensus 330 ~~~~~C~ICle~~----~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 330 STFQLCKICAEND----KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp TSSSBCTTTSSSB----CCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCCccCcCC----CCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3346899999853 2578899999999999999997446789999998864
No 63
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.34 E-value=5e-07 Score=80.03 Aligned_cols=50 Identities=14% Similarity=0.162 Sum_probs=41.1
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
..+..||||++ ++. +++++||||+|.+.||..|+.....+||+|+.++..
T Consensus 104 p~~f~CPI~~e-lm~---DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFE-LMR---EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCS-BCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccc-cCC---CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 34678999999 454 578889999999999999997543479999998863
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=2.1e-07 Score=70.04 Aligned_cols=43 Identities=26% Similarity=0.738 Sum_probs=35.0
Q ss_pred CCCCcccccccccCCceeEEcCCCCc-cchhHHHHHHhcCCCCCCCCCccccc
Q 021224 204 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~~v~LpCGH~-fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
+..|+||++. +. +++++||||. |+..|+..+ ..||+||+.+..
T Consensus 25 ~~~C~IC~~~-~~---~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDR-NI---AIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSS-CC---CBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred CCCCCcCCCC-CC---CEEEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence 3579999985 33 4678999999 999999643 679999998865
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.30 E-value=6.9e-07 Score=69.74 Aligned_cols=49 Identities=24% Similarity=0.517 Sum_probs=36.6
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhc----C---CCCCCC--CCcc
Q 021224 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH----H---QYACPI--CSKS 252 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~----~---~~~CPi--Crks 252 (316)
....||||+++ +....-+.+.+|||.|+..|+..|+.. + ..+||. |+..
T Consensus 4 ~~~~C~IC~~~-~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGE-YPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCC-CBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcc-cccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 35689999996 443333334589999999999998753 1 357999 9998
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=4.6e-07 Score=67.68 Aligned_cols=46 Identities=33% Similarity=0.732 Sum_probs=37.5
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCc-cchhHHHHHHhcCCCCCCCCCccccch
Q 021224 202 AMHHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCDM 256 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~~v~LpCGH~-fH~~Ci~~wl~~~~~~CPiCrks~~d~ 256 (316)
.....|+||++. ...+++|||||. |+..|+.. ...||+||..+...
T Consensus 13 ~~~~~C~IC~~~----~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNG----TVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSS----CCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcC----CCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhce
Confidence 446789999984 236889999999 99999984 25799999988753
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.19 E-value=4.9e-07 Score=69.32 Aligned_cols=44 Identities=34% Similarity=0.836 Sum_probs=36.4
Q ss_pred CCCCcccccccccCCceeEEcCCCCc-cchhHHHHHHhcCCCCCCCCCccccch
Q 021224 204 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCDM 256 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~~v~LpCGH~-fH~~Ci~~wl~~~~~~CPiCrks~~d~ 256 (316)
+..|+||++. + .+++++||||. |+..|+..|. .||+||..+...
T Consensus 18 ~~~C~IC~~~-~---~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEE-E---INSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSS-B---CCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCEE
T ss_pred CCEeEEeCcc-c---CcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhCe
Confidence 4579999985 2 35789999999 9999999872 799999988753
No 68
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.10 E-value=1.5e-06 Score=63.87 Aligned_cols=51 Identities=27% Similarity=0.526 Sum_probs=38.7
Q ss_pred CCCCCCCCcccccccccCCceeEEcCCC--C---ccchhHHHHHHhc-CCCCCCCCCcccc
Q 021224 200 EGAMHHDCPVCCEYLFETRQDVIVLPCG--H---TIHKNCLKEMREH-HQYACPICSKSVC 254 (316)
Q Consensus 200 E~~~~~~CPIClE~lf~s~~~~v~LpCG--H---~fH~~Ci~~wl~~-~~~~CPiCrks~~ 254 (316)
|......|.||++.. ..+ .++||. + .||..|+.+|+.. .+.+||+|+..+.
T Consensus 2 e~~~~~~CrIC~~~~---~~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 2 EDEDVPVCWICNEEL---GNE-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp TTCSCCEETTTTEEC---SCC-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCEeEEeecCC---CCc-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 445677899999852 223 468965 4 8999999999974 4578999998764
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.96 E-value=3.1e-06 Score=79.22 Aligned_cols=50 Identities=24% Similarity=0.664 Sum_probs=39.8
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhc-CCCCCCC--CCcccc
Q 021224 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-HQYACPI--CSKSVC 254 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~-~~~~CPi--Crks~~ 254 (316)
..+..||||+++ |. +|++.+.|||+|.+.||..|+.. +..+||+ |++.+.
T Consensus 179 ~~el~CPIcl~~-f~--DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKP-YE--APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSB-CS--SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCc-cc--CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 446789999996 43 25555699999999999999864 3467999 998775
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.85 E-value=3.2e-06 Score=82.17 Aligned_cols=53 Identities=21% Similarity=0.439 Sum_probs=39.0
Q ss_pred CCCCCCcccccccccCCcee----EEcCCCCccchhHHHHHHhcCC----------CCCCCCCcccc
Q 021224 202 AMHHDCPVCCEYLFETRQDV----IVLPCGHTIHKNCLKEMREHHQ----------YACPICSKSVC 254 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~~----v~LpCGH~fH~~Ci~~wl~~~~----------~~CPiCrks~~ 254 (316)
....+|+||++.+.+++.-+ ..++|||.||..|+.+|+.+.. ..||.||+++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 45678999999755423211 1358999999999999996411 36999999876
No 71
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.79 E-value=5.3e-06 Score=79.98 Aligned_cols=43 Identities=30% Similarity=0.834 Sum_probs=36.6
Q ss_pred CCCCcccccccccCCceeEEcCCCCc-cchhHHHHHHhcCCCCCCCCCccccc
Q 021224 204 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~~v~LpCGH~-fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
+..|+||++. +. .++.|||||. ||..|+..| ..||+||..+..
T Consensus 295 ~~~C~IC~~~-~~---~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDK-EV---SVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSS-BC---CEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CCCCCccCCc-CC---ceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 4689999995 33 5788899999 999999988 579999998864
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.64 E-value=3.4e-05 Score=62.58 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=40.2
Q ss_pred CCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccchh
Q 021224 206 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMS 257 (316)
Q Consensus 206 ~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d~~ 257 (316)
-|++|.-++.. ..+++||+|.|+.+|+..|.+.+..+||+|+.++.+.+
T Consensus 3 fC~~C~~Pi~i---ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIKV---YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCSE---EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeEE---EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 48888865433 56789999999999999998766789999999988643
No 73
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.62 E-value=2.8e-05 Score=57.02 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=37.9
Q ss_pred CCCCCcccccccccCCceeEEc-CCCCccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 203 MHHDCPVCCEYLFETRQDVIVL-PCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~~v~L-pCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
+...|||+++. ++ +++++ ++||+|-+.+|.+|+.. +.+||+.+.++..
T Consensus 2 ~~~~CpIs~~~-m~---dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~ 50 (61)
T 2bay_A 2 SHMLCAISGKV-PR---RPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSI 50 (61)
T ss_dssp --CCCTTTCSC-CS---SEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCG
T ss_pred CeEEecCCCCC-CC---CCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCCh
Confidence 35679999994 44 35666 99999999999999975 4679999988863
No 74
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.87 E-value=0.0054 Score=56.08 Aligned_cols=49 Identities=20% Similarity=0.510 Sum_probs=36.3
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcC-CCCCCCCCccccc
Q 021224 204 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH-QYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~-~~~CPiCrks~~d 255 (316)
-..|.||.+-+.. ...=..|+|.||..|+..|++.. +.+||.|+..|..
T Consensus 180 i~~C~iC~~iv~~---g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSS---CEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhC---CcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 4579999984432 22333499999999999998653 4689999998763
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.84 E-value=0.063 Score=41.63 Aligned_cols=33 Identities=21% Similarity=0.423 Sum_probs=24.8
Q ss_pred CCCCcccccccccCCceeEE-cCCCCccchhHHHHH
Q 021224 204 HHDCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEM 238 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~~v~-LpCGH~fH~~Ci~~w 238 (316)
+..|+||++..+. .++.. +.|||+|+..|+..+
T Consensus 3 e~~C~~C~~~~~~--~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQ--DAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCC--BCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCC--CceEECCcCChHHhHHHCHHH
Confidence 5679999974333 23333 999999999999983
No 76
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=88.71 E-value=0.57 Score=39.83 Aligned_cols=49 Identities=24% Similarity=0.508 Sum_probs=34.4
Q ss_pred cCCCCCCCCcccccccccCCceeEE-cCCCCccchhHHHHHHh----------cCCCCCCCCCcc
Q 021224 199 VEGAMHHDCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEMRE----------HHQYACPICSKS 252 (316)
Q Consensus 199 ~E~~~~~~CPIClE~lf~s~~~~v~-LpCGH~fH~~Ci~~wl~----------~~~~~CPiCrks 252 (316)
.+...+..|.||.+- ++ +.. =.|--+||..|+..-+. .+.-.||+|+..
T Consensus 58 d~Dg~~d~C~vC~~G----G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 58 DSDGMDEQCRWCAEG----GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CTTSCBCSCSSSCCC----SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred cCCCCCCeecccCCC----Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 356778999999972 22 222 26889999999996542 245679999954
No 77
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=87.75 E-value=0.19 Score=42.23 Aligned_cols=37 Identities=22% Similarity=0.621 Sum_probs=29.8
Q ss_pred cceEEcCCCCCCccc-------------cceee------eecCCCCCCccccccCC
Q 021224 280 KVWILCNDCGKTSNV-------------QFHVL------AQKCPNCKSYNTRLTRG 316 (316)
Q Consensus 280 ~~~IlCnDC~~~s~~-------------~fH~l------g~kC~~C~SyNT~~~~~ 316 (316)
.+...|.+|+..... .+|++ ..+||.|||++..+++|
T Consensus 68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i~~G 123 (139)
T 3a43_A 68 EAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVVKG 123 (139)
T ss_dssp CCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEEEES
T ss_pred CCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccEEecC
Confidence 467899999987532 56776 68999999999988765
No 78
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=87.33 E-value=0.18 Score=39.24 Aligned_cols=16 Identities=31% Similarity=0.843 Sum_probs=9.9
Q ss_pred CCCCCCccceeecCcccc
Q 021224 135 CVNCGVCMGEYFCESCKL 152 (316)
Q Consensus 135 C~~Cg~~f~~YfC~~C~l 152 (316)
|..||+. .|||..|+=
T Consensus 44 lkACGA~--~yFC~~C~~ 59 (81)
T 2jrp_A 44 LKACGAV--DYFCQNGHG 59 (81)
T ss_dssp EEETTEE--EECCTTTTC
T ss_pred HHhcCCc--CeeeccCCC
Confidence 4445544 788888853
No 79
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=86.86 E-value=0.29 Score=39.33 Aligned_cols=45 Identities=24% Similarity=0.501 Sum_probs=35.7
Q ss_pred CCCCcccccccccCCceeEEcCCC-CccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 204 HHDCPVCCEYLFETRQDVIVLPCG-HTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~~v~LpCG-H~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
..+|-.|... ++ .++.|. |+++..|+..+|+. +.+||||.+++..
T Consensus 28 ~~nCKsCWf~-~k-----~LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPt 73 (99)
T 2ko5_A 28 PQFCKSCWFE-NK-----GLVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPT 73 (99)
T ss_dssp CCCCCSSCSC-CS-----SEEECSSCEEEHHHHHHTCSS-SSEETTTTEECCC
T ss_pred cccChhhccc-cC-----CeeeecchhhHHHHHHHHHhh-ccCCcccCCcCCc
Confidence 5689999842 22 266784 99999999999985 5899999999975
No 80
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=84.44 E-value=0.36 Score=38.44 Aligned_cols=81 Identities=22% Similarity=0.580 Sum_probs=42.5
Q ss_pred CCCcceecCC-CCeeeccCcccce-----ecccc----ccccccCCCCCCCCcccccccccCCceeEE-cCCCCccchhH
Q 021224 166 GCGICRIGGC-DNFFHCNKCRCCY-----SMLLK----NSHPCVEGAMHHDCPVCCEYLFETRQDVIV-LPCGHTIHKNC 234 (316)
Q Consensus 166 ~CgiCR~G~~-~~ffHC~~C~~C~-----s~~l~----~~H~C~E~~~~~~CPIClE~lf~s~~~~v~-LpCGH~fH~~C 234 (316)
.|.||..+|. ++...|+.|+.-| .+.+. ..=.|.+= ..|.||... .....++. -.|.-.||..|
T Consensus 9 ~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C---~~C~~C~~~--~~~~~ll~Cd~C~~~yH~~C 83 (111)
T 2ysm_A 9 NCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPEC---KVCQNCKQS--GEDSKMLVCDTCDKGYHTFC 83 (111)
T ss_dssp CBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTT---CCCTTTCCC--SCCTTEEECSSSCCEEEGGG
T ss_pred CCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcC---CcccccCcc--CCCCCeeECCCCCcHHhHHh
Confidence 4556655553 4566777776544 22221 11122210 146777753 11111211 26889999999
Q ss_pred HHHHHhc---CCCCCCCCCc
Q 021224 235 LKEMREH---HQYACPICSK 251 (316)
Q Consensus 235 i~~wl~~---~~~~CPiCrk 251 (316)
+..-+.. ....||.|+.
T Consensus 84 l~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 84 LQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp SSSCCSSCCSSCCCCHHHHC
T ss_pred cCCccccCCCCCcCCcCCcC
Confidence 9864432 3467888764
No 81
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=82.87 E-value=0.49 Score=38.32 Aligned_cols=35 Identities=31% Similarity=0.568 Sum_probs=28.3
Q ss_pred cceEEcCCCCCCccccceeeee-cCCCCCCccccccCC
Q 021224 280 KVWILCNDCGKTSNVQFHVLAQ-KCPNCKSYNTRLTRG 316 (316)
Q Consensus 280 ~~~IlCnDC~~~s~~~fH~lg~-kC~~C~SyNT~~~~~ 316 (316)
.+...|.+|+......-. .. +||.|+|.++++++|
T Consensus 71 p~~~~C~~CG~~~e~~~~--~~~~CP~Cgs~~~~i~~G 106 (119)
T 2kdx_A 71 KVELECKDCSHVFKPNAL--DYGVCEKCHSKNVIITQG 106 (119)
T ss_dssp CCEEECSSSSCEECSCCS--TTCCCSSSSSCCCEEEES
T ss_pred cceEEcCCCCCEEeCCCC--CCCcCccccCCCcEEecC
Confidence 467899999988766432 45 899999999998876
No 82
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=81.16 E-value=0.39 Score=38.56 Aligned_cols=75 Identities=17% Similarity=0.433 Sum_probs=42.6
Q ss_pred cCCCCeeeccCcccceecc-c-----------cccccccCCCCCCCCcccccccccCCceeEE-cCCCCccchhHHHHHH
Q 021224 173 GGCDNFFHCNKCRCCYSML-L-----------KNSHPCVEGAMHHDCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEMR 239 (316)
Q Consensus 173 G~~~~ffHC~~C~~C~s~~-l-----------~~~H~C~E~~~~~~CPIClE~lf~s~~~~v~-LpCGH~fH~~Ci~~wl 239 (316)
|.+++...|..|+.-|-.+ | ...=.|.+= ..|.||.+.-.+ ....+. -.|...||..|+..-|
T Consensus 21 g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~vC~~~~~~-~~~ll~Cd~C~~~yH~~Cl~p~l 96 (112)
T 3v43_A 21 KKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIEC---KTCSSCRDQGKN-ADNMLFCDSCDRGFHMECCDPPL 96 (112)
T ss_dssp SCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTT---CCBTTTCCCCCT-TCCCEECTTTCCEECGGGCSSCC
T ss_pred CCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccC---CccccccCcCCC-ccceEEcCCCCCeeecccCCCCC
Confidence 3456788888887655322 1 122234331 157888752111 112222 2688999999998754
Q ss_pred hc---CCCCCCCCCc
Q 021224 240 EH---HQYACPICSK 251 (316)
Q Consensus 240 ~~---~~~~CPiCrk 251 (316)
.. +...||.|+.
T Consensus 97 ~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 97 TRMPKGMWICQICRP 111 (112)
T ss_dssp SSCCSSCCCCTTTSC
T ss_pred CCCCCCCeECCCCCC
Confidence 32 3467999985
No 83
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=76.68 E-value=0.42 Score=37.21 Aligned_cols=68 Identities=22% Similarity=0.436 Sum_probs=43.5
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccchhHHHHHhHHHHHcCCCChhhhcCcce
Q 021224 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVW 282 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d~~~~~~~lD~~ia~~pmP~ey~~~~~~ 282 (316)
|+..||+|...|..... +..+..|-..+... ..||-|..++.... +=..++
T Consensus 1 M~~~CP~C~~~l~~~~~--------~~~C~~C~~~~~~~--afCPeCgq~Le~lk-------------------ACGA~~ 51 (81)
T 2jrp_A 1 MEITCPVCHHALERNGD--------TAHCETCAKDFSLQ--ALCPDCRQPLQVLK-------------------ACGAVD 51 (81)
T ss_dssp CCCCCSSSCSCCEECSS--------EEECTTTCCEEEEE--EECSSSCSCCCEEE-------------------ETTEEE
T ss_pred CCCCCCCCCCccccCCC--------ceECccccccCCCc--ccCcchhhHHHHHH-------------------hcCCcC
Confidence 35689999976543222 34456665555432 47999999887521 112368
Q ss_pred EEcCCCCC---Cccccceee
Q 021224 283 ILCNDCGK---TSNVQFHVL 299 (316)
Q Consensus 283 IlCnDC~~---~s~~~fH~l 299 (316)
.+||.|++ ++-|.|.+.
T Consensus 52 yFC~~C~~LiSkkrv~f~~~ 71 (81)
T 2jrp_A 52 YFCQNGHGLISKKRVNFVIS 71 (81)
T ss_dssp ECCTTTTCCCCTTSSEEEEC
T ss_pred eeeccCCCEeecceEEEEec
Confidence 99999995 566766654
No 84
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=76.58 E-value=0.22 Score=40.25 Aligned_cols=82 Identities=22% Similarity=0.575 Sum_probs=46.2
Q ss_pred CCCcceecC--------CCCeeeccCcccce-----eccc-------cccccccCCCCCCCCcccccccccCCceeEEc-
Q 021224 166 GCGICRIGG--------CDNFFHCNKCRCCY-----SMLL-------KNSHPCVEGAMHHDCPVCCEYLFETRQDVIVL- 224 (316)
Q Consensus 166 ~CgiCR~G~--------~~~ffHC~~C~~C~-----s~~l-------~~~H~C~E~~~~~~CPIClE~lf~s~~~~v~L- 224 (316)
.|+||..|+ +++...|..|+.-+ ...+ ...=.|.+= ..|.||... ... ..+++
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~~C~~~--~~~-~~ll~C 76 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC---KSCILCGTS--END-DQLLFC 76 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGG---CCCTTTTCC--TTT-TTEEEC
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCcccc---CccCccccc--CCC-CceEEc
Confidence 456665443 46788888887554 3221 112233321 257888763 111 22333
Q ss_pred -CCCCccchhHHHHHHhc---CCCCCCCCCccc
Q 021224 225 -PCGHTIHKNCLKEMREH---HQYACPICSKSV 253 (316)
Q Consensus 225 -pCGH~fH~~Ci~~wl~~---~~~~CPiCrks~ 253 (316)
.|...||..|+..=|.. +...||.|...+
T Consensus 77 d~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 77 DDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp SSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred CCCCccccccccCCCccCCCCCCeECccccchh
Confidence 68899999999964332 345688886543
No 85
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=76.15 E-value=4.3 Score=32.01 Aligned_cols=32 Identities=22% Similarity=0.727 Sum_probs=20.3
Q ss_pred CeeecCCC---CcceecC-CCCeeeccCcccceecc
Q 021224 160 KQYHCDGC---GICRIGG-CDNFFHCNKCRCCYSML 191 (316)
Q Consensus 160 ~~yHC~~C---giCR~G~-~~~ffHC~~C~~C~s~~ 191 (316)
..+.|+.| .+|+.++ .+....|+.|..-|-+.
T Consensus 47 ~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~ 82 (111)
T 2ysm_A 47 AGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHTF 82 (111)
T ss_dssp TTCCCTTTCCCTTTCCCSCCTTEEECSSSCCEEEGG
T ss_pred cCccCCcCCcccccCccCCCCCeeECCCCCcHHhHH
Confidence 45666654 4666554 34688999988766543
No 86
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=74.09 E-value=5 Score=31.81 Aligned_cols=56 Identities=18% Similarity=0.419 Sum_probs=41.6
Q ss_pred cCCCCCCCCcccccccccCCceeEEc---CCCCccchhHHHHHHhcCCCCCCCCCcccc
Q 021224 199 VEGAMHHDCPVCCEYLFETRQDVIVL---PCGHTIHKNCLKEMREHHQYACPICSKSVC 254 (316)
Q Consensus 199 ~E~~~~~~CPIClE~lf~s~~~~v~L---pCGH~fH~~Ci~~wl~~~~~~CPiCrks~~ 254 (316)
+.......|.||.+++-...+.-+.. -|+-.+++.|++.-.+..+..||.|+..+.
T Consensus 11 ~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 11 LKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred ccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 44445678999999864443333333 578899999999988777888999997765
No 87
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=73.08 E-value=2.1 Score=34.47 Aligned_cols=30 Identities=20% Similarity=0.501 Sum_probs=14.1
Q ss_pred CeeecCCCC----cceecCCCCeeeccCcccceec
Q 021224 160 KQYHCDGCG----ICRIGGCDNFFHCNKCRCCYSM 190 (316)
Q Consensus 160 ~~yHC~~Cg----iCR~G~~~~ffHC~~C~~C~s~ 190 (316)
.+-.|++|| +...=|..||| |..|+-=+|+
T Consensus 60 ~~a~CPdC~q~LevLkACGAvdYF-C~~chgLiSK 93 (101)
T 2jne_A 60 MKALCPDCHQPLQVLKACGAVDYF-CQHGHGLISK 93 (101)
T ss_dssp EEEECTTTCSBCEEEEETTEEEEE-ETTTTEEECT
T ss_pred ccccCcchhhHHHHHHHhcCcchh-hccCCceeec
Confidence 344555555 22222334444 5555555554
No 88
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=69.16 E-value=2.2 Score=34.36 Aligned_cols=33 Identities=27% Similarity=0.694 Sum_probs=22.0
Q ss_pred eeecCCcCccc--cCCCCCCCCcc--------ceeecCccccc
Q 021224 121 QVICSLCGTEQ--KQVCVNCGVCM--------GEYFCESCKLF 153 (316)
Q Consensus 121 ~v~C~~C~~~Q--~~~C~~Cg~~f--------~~YfC~~C~l~ 153 (316)
...|..|+..- ...||-|+.++ +.|||..|+=.
T Consensus 48 ~~hC~~C~~~f~~~a~CPdC~q~LevLkACGAvdYFC~~chgL 90 (101)
T 2jne_A 48 HARCRSCGEFIEMKALCPDCHQPLQVLKACGAVDYFCQHGHGL 90 (101)
T ss_dssp EEEETTTCCEEEEEEECTTTCSBCEEEEETTEEEEEETTTTEE
T ss_pred EEECccccchhhccccCcchhhHHHHHHHhcCcchhhccCCce
Confidence 34466666552 56677666665 68999999743
No 89
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=65.71 E-value=4.3 Score=29.82 Aligned_cols=44 Identities=23% Similarity=0.462 Sum_probs=30.4
Q ss_pred CCCCcccccccccCCceeEE-cCCCCccchhHHHHHHhc---CCCCCCCCCcc
Q 021224 204 HHDCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEMREH---HQYACPICSKS 252 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~~v~-LpCGH~fH~~Ci~~wl~~---~~~~CPiCrks 252 (316)
...|.||.+. .+ ++. -.|...||..|+...|.. +...||.|+..
T Consensus 12 ~~~C~vC~~~----~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDG----TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCC----TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCC----Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 4569999852 22 221 268899999999887653 34679999854
No 90
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=65.49 E-value=1.2 Score=35.43 Aligned_cols=29 Identities=28% Similarity=0.698 Sum_probs=20.3
Q ss_pred EcCCCCccchhHHHHHHhc-------CCCCCCCCCc
Q 021224 223 VLPCGHTIHKNCLKEMREH-------HQYACPICSK 251 (316)
Q Consensus 223 ~LpCGH~fH~~Ci~~wl~~-------~~~~CPiCrk 251 (316)
---|...+|..|+...... ..+.||.|+.
T Consensus 78 C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 78 CCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp ETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred eeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 3579999999998754321 1377999984
No 91
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=65.48 E-value=6.9 Score=32.62 Aligned_cols=52 Identities=23% Similarity=0.436 Sum_probs=34.4
Q ss_pred cCCCCCCCCcccccccccCCceeEEcCCCCccchhHHHHHH----------hcCCCCCCCCCcccc
Q 021224 199 VEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMR----------EHHQYACPICSKSVC 254 (316)
Q Consensus 199 ~E~~~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl----------~~~~~~CPiCrks~~ 254 (316)
.+...+..|.||.+- ++-+-==.|-..||..|+..-+ ..+.-.|++|+.+-.
T Consensus 52 d~Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~pl 113 (129)
T 3ql9_A 52 DSDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEPL 113 (129)
T ss_dssp CTTSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGGG
T ss_pred CCCCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHHH
Confidence 456778889999962 2111111578999999999642 124467999985433
No 92
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=63.64 E-value=4.1 Score=34.67 Aligned_cols=13 Identities=31% Similarity=1.099 Sum_probs=6.6
Q ss_pred CCCeeecCCCCcc
Q 021224 158 SKKQYHCDGCGIC 170 (316)
Q Consensus 158 ~k~~yHC~~CgiC 170 (316)
.++-|||+.||+|
T Consensus 112 ~~~ffHC~~C~~C 124 (143)
T 2dkt_A 112 KEDFFHCLKCNLC 124 (143)
T ss_dssp GGGEEEETTTTEE
T ss_pred CcCcEECCcCCee
Confidence 3445555555555
No 93
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=61.73 E-value=1.4 Score=31.59 Aligned_cols=50 Identities=26% Similarity=0.470 Sum_probs=31.3
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchhHHHHHHh----cCCCCCCCCCcc
Q 021224 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMRE----HHQYACPICSKS 252 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~----~~~~~CPiCrks 252 (316)
....||||.....+...-+.--.|...||..|+.--.. ...|.||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 35679999875322221122226789999999875321 246889999753
No 94
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=48.90 E-value=5.3 Score=32.88 Aligned_cols=16 Identities=38% Similarity=0.816 Sum_probs=11.6
Q ss_pred CCCCCCCCccccchhH
Q 021224 243 QYACPICSKSVCDMSK 258 (316)
Q Consensus 243 ~~~CPiCrks~~d~~~ 258 (316)
.|.||+|.+.+.....
T Consensus 161 ~~~C~~C~~~f~~~~~ 176 (190)
T 2i13_A 161 PYKCPECGKSFSRRDA 176 (190)
T ss_dssp CEECTTTCCEESSHHH
T ss_pred CeECCCCCCccCCHHH
Confidence 4778888888876543
No 95
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.83 E-value=11 Score=28.36 Aligned_cols=64 Identities=23% Similarity=0.553 Sum_probs=38.5
Q ss_pred CCCeeeccCcccceeccccccccccCCCCCCCCcccccccccCCceeEEc--CCCCccchhHHHHHHhc---C-CCCCCC
Q 021224 175 CDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMREH---H-QYACPI 248 (316)
Q Consensus 175 ~~~ffHC~~C~~C~s~~l~~~H~C~E~~~~~~CPIClE~lf~s~~~~v~L--pCGH~fH~~Ci~~wl~~---~-~~~CPi 248 (316)
+.++..|..|.. ...=.|.+ ..|.||... ++.. .+++ .|.-.||..|+..=|.. + .-.||.
T Consensus 7 ~~~~~~c~~C~~------~~~w~C~~----c~C~vC~~~--~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~ 73 (77)
T 2e6s_A 7 GRNDTECDLCGG------DPEKKCHS----CSCRVCGGK--HEPN-MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPS 73 (77)
T ss_dssp CCCCCCCTTTCS------CSSSCCSS----SSCSSSCCC--CCST-TEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTT
T ss_pred ccCCccChhhcC------CCCeECCC----CCCcCcCCc--CCCC-CEEEcCCCCccccccccCCCccCCCCCCCcCCcC
Confidence 356666766654 12234543 368999852 1222 2233 67899999999864432 2 457999
Q ss_pred CCc
Q 021224 249 CSK 251 (316)
Q Consensus 249 Crk 251 (316)
|..
T Consensus 74 C~~ 76 (77)
T 2e6s_A 74 CKT 76 (77)
T ss_dssp TCC
T ss_pred ccC
Confidence 874
No 96
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=46.22 E-value=12 Score=26.70 Aligned_cols=45 Identities=29% Similarity=0.667 Sum_probs=30.5
Q ss_pred CCCCCCcccccccccCCceeEE-cCCCCccchhHHHHHHhc---CCCCCCCCCc
Q 021224 202 AMHHDCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEMREH---HQYACPICSK 251 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~~v~-LpCGH~fH~~Ci~~wl~~---~~~~CPiCrk 251 (316)
..+..|.||.+. . .++. -.|.-.||..|+..-+.. ....||.|++
T Consensus 9 ~~~~~C~vC~~~----g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG----G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC----S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC----C-cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 456789999862 1 2211 167789999999975432 3467999975
No 97
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=45.98 E-value=4.7 Score=29.63 Aligned_cols=47 Identities=23% Similarity=0.508 Sum_probs=31.3
Q ss_pred CCCCcccccccccCCceeEEc--CCCCccchhHHHHHHhc---CCCCCCCCCccc
Q 021224 204 HHDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMREH---HQYACPICSKSV 253 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~~v~L--pCGH~fH~~Ci~~wl~~---~~~~CPiCrks~ 253 (316)
...|+||... .+ . ..+++ .|.-.||..|+..-+.. ..+.||.|+..+
T Consensus 18 ~~~C~~C~~~-~~-~-~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 18 IWICPGCNKP-DD-G-SPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp EECBTTTTBC-CS-S-CCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CcCCCCCCCC-CC-C-CCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 3469999864 22 2 22333 67899999999864432 358899998654
No 98
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=43.48 E-value=17 Score=35.42 Aligned_cols=68 Identities=16% Similarity=0.463 Sum_probs=44.5
Q ss_pred ccCcccceeccccccccccCCCCCCCCcccccccccCCceeEE-c--CCCCccchhHHHHHHhc---------CCCCCCC
Q 021224 181 CNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIV-L--PCGHTIHKNCLKEMREH---------HQYACPI 248 (316)
Q Consensus 181 C~~C~~C~s~~l~~~H~C~E~~~~~~CPIClE~lf~s~~~~v~-L--pCGH~fH~~Ci~~wl~~---------~~~~CPi 248 (316)
--.|..|...-+.....-.+...+..|.+|.+. + .++. = .|...|+..||+.++.. ..-.|=+
T Consensus 70 v~lC~~Ck~~y~~~~f~~D~DG~~~yCr~C~~G----g-~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~ 144 (386)
T 2pv0_B 70 GGICAPCKDKFLDALFLYDDDGYQSYCSICCSG----E-TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYL 144 (386)
T ss_dssp SBCCHHHHHHHHTTTTCBCSSSSBCSCTTTCCC----S-SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTT
T ss_pred cchhhHHHHHHhccCcccCCCCCcccceEcCCC----C-eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEE
Confidence 444555555444445556677889999999962 2 2222 2 68899999999998732 2356888
Q ss_pred CCccc
Q 021224 249 CSKSV 253 (316)
Q Consensus 249 Crks~ 253 (316)
|...-
T Consensus 145 C~p~p 149 (386)
T 2pv0_B 145 CLPSS 149 (386)
T ss_dssp TSSCC
T ss_pred cCCcc
Confidence 88543
No 99
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=43.03 E-value=10 Score=26.45 Aligned_cols=9 Identities=33% Similarity=1.062 Sum_probs=6.6
Q ss_pred cCCCCCCCC
Q 021224 132 KQVCVNCGV 140 (316)
Q Consensus 132 ~~~C~~Cg~ 140 (316)
-..||.||.
T Consensus 19 ~k~CP~CG~ 27 (50)
T 3j20_Y 19 NKFCPRCGP 27 (50)
T ss_dssp SEECSSSCS
T ss_pred cccCCCCCC
Confidence 466888877
No 100
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=41.00 E-value=12 Score=32.75 Aligned_cols=50 Identities=18% Similarity=0.547 Sum_probs=31.9
Q ss_pred CCCcccccccccCCc-eeEEc---CCCCccchhHHHHH------Hh----cCCCCCCCCCccccc
Q 021224 205 HDCPVCCEYLFETRQ-DVIVL---PCGHTIHKNCLKEM------RE----HHQYACPICSKSVCD 255 (316)
Q Consensus 205 ~~CPIClE~lf~s~~-~~v~L---pCGH~fH~~Ci~~w------l~----~~~~~CPiCrks~~d 255 (316)
..||||... +...+ ...++ .|...||..|..-- ++ ...|.||.|+..-..
T Consensus 3 ~~CpiC~k~-Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 3 NFCPLCDKC-YDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CBCTTTCCB-CTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred CcCCCCcCc-cCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 469999874 33222 12233 57899999998531 11 025999999987664
No 101
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=40.95 E-value=17 Score=24.62 Aligned_cols=45 Identities=24% Similarity=0.651 Sum_probs=27.7
Q ss_pred CCcccccccccCCceeEE-cCCCCccchhHHHHHHhc---CCCCCCCCCcc
Q 021224 206 DCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEMREH---HQYACPICSKS 252 (316)
Q Consensus 206 ~CPIClE~lf~s~~~~v~-LpCGH~fH~~Ci~~wl~~---~~~~CPiCrks 252 (316)
.|.||... ......+. -.|.-.||..|+..=+.. +...||.|+..
T Consensus 2 ~C~vC~~~--~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKK--GEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCS--SCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCC--CCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 47788753 11112222 268899999999763332 34679999753
No 102
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=37.74 E-value=9.2 Score=27.29 Aligned_cols=48 Identities=21% Similarity=0.452 Sum_probs=30.5
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhc---CCCCCCCCCccc
Q 021224 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSKSV 253 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~---~~~~CPiCrks~ 253 (316)
..+..|.||.+. . +-+.=-.|.-.||..|+..-+.. ....||.|+...
T Consensus 7 ~~~~~C~vC~~~--g--~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG--G--ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC--S--SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC--C--CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 446779999852 1 10111157789999999864432 346799998654
No 103
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=37.54 E-value=10 Score=26.17 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=26.8
Q ss_pred CCCcccccccccCCceeEEc-CCCCccchhHHHHHH---hcCCCCCCCCC
Q 021224 205 HDCPVCCEYLFETRQDVIVL-PCGHTIHKNCLKEMR---EHHQYACPICS 250 (316)
Q Consensus 205 ~~CPIClE~lf~s~~~~v~L-pCGH~fH~~Ci~~wl---~~~~~~CPiCr 250 (316)
-.|.||..+..+...-+.-- .|.--||..|+.--. ....|.||.|+
T Consensus 3 c~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 3 CAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CSCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred ccCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 35788887532221111112 578899999976421 12569999985
No 104
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=37.49 E-value=26 Score=24.97 Aligned_cols=15 Identities=20% Similarity=0.516 Sum_probs=9.0
Q ss_pred CCeeeccCcccceec
Q 021224 176 DNFFHCNKCRCCYSM 190 (316)
Q Consensus 176 ~~ffHC~~C~~C~s~ 190 (316)
+..|.|..|+.-+..
T Consensus 62 ~~~~~C~~C~~~f~~ 76 (96)
T 2dmd_A 62 ERPFKCQICPYASRN 76 (96)
T ss_dssp CCCEECSSSSCEESS
T ss_pred CCCccCCCCCCccCC
Confidence 455667777665543
No 105
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=37.14 E-value=30 Score=33.58 Aligned_cols=48 Identities=15% Similarity=0.416 Sum_probs=34.4
Q ss_pred CCCCcccccccccCCceeEEcCCCCc--cchhHHHHHHh-cCCCCCCCCCcccc
Q 021224 204 HHDCPVCCEYLFETRQDVIVLPCGHT--IHKNCLKEMRE-HHQYACPICSKSVC 254 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~~v~LpCGH~--fH~~Ci~~wl~-~~~~~CPiCrks~~ 254 (316)
...|||=+..|. .|+....|.|. |=..=+.++.. .....||+|.+.+.
T Consensus 249 SL~CPlS~~ri~---~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMK---YPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCS---SEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCcccccc---ccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 357998887543 38888999987 65555555432 34578999999885
No 106
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=36.56 E-value=10 Score=33.10 Aligned_cols=46 Identities=20% Similarity=0.465 Sum_probs=31.7
Q ss_pred CCCCCCCcccccccccCCceeEEc--CCCCccchhHHHHHHhc---CCCCCCCCCcc
Q 021224 201 GAMHHDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMREH---HQYACPICSKS 252 (316)
Q Consensus 201 ~~~~~~CPIClE~lf~s~~~~v~L--pCGH~fH~~Ci~~wl~~---~~~~CPiCrks 252 (316)
...+..|.||.+. + . +++ .|.-.||..|+..-+.. +...||.|+..
T Consensus 4 d~~~~~C~~C~~~----g-~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 4 DPNEDWCAVCQNG----G-D-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp CSSCSSBTTTCCC----E-E-EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCCC----C-c-eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 3456789999852 1 2 222 57899999999876542 34679999864
No 107
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=35.81 E-value=15 Score=26.60 Aligned_cols=18 Identities=22% Similarity=0.621 Sum_probs=14.6
Q ss_pred ecCCcCccc-cCCCCCCCC
Q 021224 123 ICSLCGTEQ-KQVCVNCGV 140 (316)
Q Consensus 123 ~C~~C~~~Q-~~~C~~Cg~ 140 (316)
.|+.|+..+ .+.|||||.
T Consensus 3 AC~~C~~v~~~~~CpnC~~ 21 (59)
T 3lpe_B 3 ACLKCKYLTNDEICPICHS 21 (59)
T ss_dssp EETTTCBEESSSBCTTTCC
T ss_pred ccccCCcccCCCCCCCCCC
Confidence 488888887 667999986
No 108
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=35.60 E-value=33 Score=33.16 Aligned_cols=48 Identities=23% Similarity=0.480 Sum_probs=34.7
Q ss_pred CCCCcccccccccCCceeEEcCCCCc--cchhHHHHHHh-cCCCCCCCCCcccc
Q 021224 204 HHDCPVCCEYLFETRQDVIVLPCGHT--IHKNCLKEMRE-HHQYACPICSKSVC 254 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~~v~LpCGH~--fH~~Ci~~wl~-~~~~~CPiCrks~~ 254 (316)
...|||=+..|. .|++...|.|. |=..=+.++.. .....||+|.+.+.
T Consensus 215 SL~CPlS~~ri~---~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLT---IPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCS---SEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceec---cCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 346998887543 38888999987 66665555543 34578999999886
No 109
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=35.02 E-value=44 Score=21.30 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=9.4
Q ss_pred CCCCCCCCccccchh
Q 021224 243 QYACPICSKSVCDMS 257 (316)
Q Consensus 243 ~~~CPiCrks~~d~~ 257 (316)
.|.|++|.+.+....
T Consensus 4 ~~~C~~C~~~f~~~~ 18 (57)
T 3uk3_C 4 SRECSYCGKFFRSNY 18 (57)
T ss_dssp -CBCTTTCCBCSCHH
T ss_pred CccCCCCcchhCChH
Confidence 366777777776543
No 110
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=34.19 E-value=26 Score=24.84 Aligned_cols=9 Identities=33% Similarity=1.054 Sum_probs=4.7
Q ss_pred cCCCCCCCC
Q 021224 132 KQVCVNCGV 140 (316)
Q Consensus 132 ~~~C~~Cg~ 140 (316)
...||.||.
T Consensus 18 ~~fCPkCG~ 26 (55)
T 2k4x_A 18 HRFCPRCGP 26 (55)
T ss_dssp SCCCTTTTT
T ss_pred cccCcCCCC
Confidence 345555554
No 111
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=34.09 E-value=69 Score=33.44 Aligned_cols=81 Identities=27% Similarity=0.629 Sum_probs=50.9
Q ss_pred cccccCCCCCCCCccccccccc----CC--ceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccchhHHHHHh-----
Q 021224 195 SHPCVEGAMHHDCPVCCEYLFE----TR--QDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKY----- 263 (316)
Q Consensus 195 ~H~C~E~~~~~~CPIClE~lf~----s~--~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d~~~~~~~l----- 263 (316)
+-+|....-...||+|.-.+.+ ++ ...--|.||-.||.+|++.+.... |+-.+.-..|++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~c~~c~~~~~~~~--------~~~~~~~~~w~~~~~~~~ 75 (776)
T 4gut_A 4 SRKCEKAGCTATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRSH--------KDGYDKYTTWKKIWTSNG 75 (776)
T ss_dssp BSSBSSTTCCCSSCCBSCCCSTTCCTTSCBSCEEEEETTEEEEHHHHHHHHSTT--------STTHHHHHHHHHHHHHTC
T ss_pred ccccccCCCcccccHHHHHHHHHHHhCCCCcceeEeccccchhHHHHHHHhccC--------cchhHHHHHHHHHHHhCC
Confidence 4567766667889999754421 11 234568999999999999987642 2222333345542
Q ss_pred ------HHHHHcCCCChhhhcCcceEEcC--CCCC
Q 021224 264 ------DREIAATPMPEAYLNKKVWILCN--DCGK 290 (316)
Q Consensus 264 ------D~~ia~~pmP~ey~~~~~~IlCn--DC~~ 290 (316)
...++++.+| -++.|. +|++
T Consensus 76 ~~~~~~~~~~~~~~l~-------~~~~c~~~~c~~ 103 (776)
T 4gut_A 76 KTEPSPKAFMADQQLP-------YWVQCTKPECRK 103 (776)
T ss_dssp CSCCCHHHHHHHHTSC-------CEEECCCTTTCC
T ss_pred ccchhHHHHHHhccCc-------HhhhcCcccccc
Confidence 2334444444 478899 9987
No 112
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=33.70 E-value=20 Score=23.26 Aligned_cols=14 Identities=36% Similarity=0.883 Sum_probs=11.5
Q ss_pred CCCCCCCccccchh
Q 021224 244 YACPICSKSVCDMS 257 (316)
Q Consensus 244 ~~CPiCrks~~d~~ 257 (316)
+.||+|.+.+....
T Consensus 6 FiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 6 FICPQCMKSLGSAD 19 (34)
T ss_dssp EECTTTCCEESSHH
T ss_pred cCCcHHHHHcCCHH
Confidence 78999999998643
No 113
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=33.37 E-value=29 Score=25.68 Aligned_cols=50 Identities=18% Similarity=0.343 Sum_probs=29.8
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchhHHHHHH----hcCCCCCCCCCcccc
Q 021224 204 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMR----EHHQYACPICSKSVC 254 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl----~~~~~~CPiCrks~~ 254 (316)
...| ||.........-+.--.|.-.||..|+.--. ....|.||.|+....
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 4456 8876421122112223688999999996421 124688999997653
No 114
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=31.97 E-value=27 Score=23.58 Aligned_cols=10 Identities=30% Similarity=0.869 Sum_probs=4.2
Q ss_pred CeeeccCccc
Q 021224 177 NFFHCNKCRC 186 (316)
Q Consensus 177 ~ffHC~~C~~ 186 (316)
..|.|..||.
T Consensus 38 k~~~C~~C~k 47 (62)
T 1vd4_A 38 GTFRCTFCHT 47 (62)
T ss_dssp TEEBCSSSCC
T ss_pred CCEECCCCCC
Confidence 3344444443
No 115
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=31.95 E-value=25 Score=26.38 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=18.6
Q ss_pred cceeecCCcCccc-cCCCCCCCCc
Q 021224 119 VNQVICSLCGTEQ-KQVCVNCGVC 141 (316)
Q Consensus 119 v~~v~C~~C~~~Q-~~~C~~Cg~~ 141 (316)
..+..|..|...+ .+.|||||..
T Consensus 9 ~~~~AC~~C~~~~~~~~CPnC~s~ 32 (69)
T 1ryq_A 9 SSEKACRHCHYITSEDRCPVCGSR 32 (69)
T ss_dssp --CEEETTTCBEESSSSCTTTCCC
T ss_pred chhhhHHhCCccccCCcCCCccCC
Confidence 4578999999998 8999999843
No 116
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=31.70 E-value=24 Score=30.41 Aligned_cols=54 Identities=19% Similarity=0.527 Sum_probs=35.7
Q ss_pred CcccceeccccccccccCCCCCCCCcccccccccCCceeEEc---CCCCccchhHHHHHHhc
Q 021224 183 KCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVL---PCGHTIHKNCLKEMREH 241 (316)
Q Consensus 183 ~C~~C~s~~l~~~H~C~E~~~~~~CPIClE~lf~s~~~~v~L---pCGH~fH~~Ci~~wl~~ 241 (316)
.|..|...-+.....-.+.+.+..|.||.+- + .++.- .|...|+..||+.++..
T Consensus 58 lC~~Ck~~y~e~~f~~DeDG~~~yC~wC~~G----g-~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 58 MCQNCKNCFLECAYQYDDDGYQSYCTICCGG----R-EVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp ECHHHHHHHHHHTTCBCTTSSBSSCTTTSCC----S-EEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred hhHHHHHHHhhcccccCCCCCcceeeEecCC----C-eEEeeCCCCCCCchhHHHHHHhcCH
Confidence 3444444334444555778889999999962 2 23332 47789999999998753
No 117
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=31.52 E-value=14 Score=27.38 Aligned_cols=52 Identities=19% Similarity=0.430 Sum_probs=32.5
Q ss_pred cCCCCCCCCcccccccccCCceeEEc--CCCCccchhHHHHH-HhcCCCCCCCCCc
Q 021224 199 VEGAMHHDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEM-REHHQYACPICSK 251 (316)
Q Consensus 199 ~E~~~~~~CPIClE~lf~s~~~~v~L--pCGH~fH~~Ci~~w-l~~~~~~CPiCrk 251 (316)
.+...+..|.||.+.-.+.. ..+++ .|.-.||..|+..- +-.+.-.||.|+.
T Consensus 11 ~~~~~~~~C~vC~~~~s~~~-~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 11 SLIDEDAVCSICMDGESQNS-NVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCCSSCSCSSSCCCCCCSS-SCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred cCCCCCCCCCCCCCCCCCCC-CCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 34456788999986321122 22333 68899999999853 2223466888863
No 118
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=30.96 E-value=14 Score=22.86 Aligned_cols=30 Identities=27% Similarity=0.585 Sum_probs=18.4
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchhHH
Q 021224 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCL 235 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci 235 (316)
+...||.|...++.. +.+. .=|..+|..|+
T Consensus 2 m~~~C~~C~k~Vy~~-Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 2 MNPNCARCGKIVYPT-EKVN--CLDKFWHKACF 31 (31)
T ss_dssp CCCBCSSSCSBCCGG-GCCC--SSSSCCCGGGC
T ss_pred CCCcCCccCCEEecc-eeEE--ECCeEecccCC
Confidence 345788888765543 2222 33788888874
No 119
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=30.29 E-value=16 Score=22.75 Aligned_cols=16 Identities=31% Similarity=0.831 Sum_probs=13.0
Q ss_pred CCCCCCCCccccchhH
Q 021224 243 QYACPICSKSVCDMSK 258 (316)
Q Consensus 243 ~~~CPiCrks~~d~~~ 258 (316)
.++||+|+..+.|+..
T Consensus 3 k~~CpvCk~q~Pd~kt 18 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMDT 18 (28)
T ss_dssp CEECTTSSCEESSHHH
T ss_pred cccCccccccCcChHH
Confidence 4789999999988654
No 120
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=30.21 E-value=37 Score=26.63 Aligned_cols=32 Identities=28% Similarity=0.754 Sum_probs=24.3
Q ss_pred CCCCCCcccccccccCCceeEEcC---CCCccchhHHHHH
Q 021224 202 AMHHDCPVCCEYLFETRQDVIVLP---CGHTIHKNCLKEM 238 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~~v~Lp---CGH~fH~~Ci~~w 238 (316)
..+..|+||-. +++. ..+| ||-.||..|+.+.
T Consensus 13 ~~D~~C~VC~~--~t~~---~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV--WTAE---SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC--CCSS---CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccc--cccc---ceeccccccccccHhhcccc
Confidence 45788999984 5532 3555 5899999999996
No 121
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=29.69 E-value=50 Score=23.38 Aligned_cols=41 Identities=22% Similarity=0.524 Sum_probs=27.7
Q ss_pred CCCCccccccccc---CCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 204 HHDCPVCCEYLFE---TRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 204 ~~~CPIClE~lf~---s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
...|+.|.+.+.. ....+..+ |..+|.+| ++|-.|++++..
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~--~~~~H~~C---------F~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYE--GQSWHDYC---------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEET--TEEEETTT---------CBCSSSCCBCTT
T ss_pred CccCcccCCcccCCCCCceeEEEC--cceeCccc---------CEehhcCCCCCC
Confidence 4579999987664 22333333 78888765 568889988763
No 122
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=28.49 E-value=18 Score=30.78 Aligned_cols=45 Identities=18% Similarity=0.487 Sum_probs=30.3
Q ss_pred CCCCcccccccccCCceeEE-cCCCCccchhHHHHHHhc---CCCCCCCCCccc
Q 021224 204 HHDCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEMREH---HQYACPICSKSV 253 (316)
Q Consensus 204 ~~~CPIClE~lf~s~~~~v~-LpCGH~fH~~Ci~~wl~~---~~~~CPiCrks~ 253 (316)
+..|.||.+. ++ ++. =.|.-.||..|+..-+.. +...||.|+...
T Consensus 4 ~~~C~~C~~~----g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG----GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC----SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC----Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 5679999852 22 111 157889999999876543 346799999643
No 123
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=28.45 E-value=54 Score=25.40 Aligned_cols=47 Identities=23% Similarity=0.574 Sum_probs=29.5
Q ss_pred CCCcccccccccCCceeEEc--CCCCccchhHHHHHHhc--CCCCCCCCCccccc
Q 021224 205 HDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMREH--HQYACPICSKSVCD 255 (316)
Q Consensus 205 ~~CPIClE~lf~s~~~~v~L--pCGH~fH~~Ci~~wl~~--~~~~CPiCrks~~d 255 (316)
..| ||... .+. ..++. .|.-.||..|+..-+.. ..+.||.|+..-.+
T Consensus 29 vrC-iC~~~-~~~--~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~~~~ 79 (98)
T 2lv9_A 29 TRC-ICGFT-HDD--GYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPRNLD 79 (98)
T ss_dssp CCC-TTSCC-SCS--SCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSSCCC
T ss_pred EEe-ECCCc-cCC--CcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCCCCC
Confidence 346 78653 221 23333 68899999999763221 35889999865544
No 124
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=27.96 E-value=29 Score=24.31 Aligned_cols=10 Identities=30% Similarity=0.737 Sum_probs=5.9
Q ss_pred CeeecCCCCc
Q 021224 160 KQYHCDGCGI 169 (316)
Q Consensus 160 ~~yHC~~Cgi 169 (316)
+--+|+.||.
T Consensus 22 P~IrCpyCGy 31 (48)
T 4ayb_P 22 PGVRCPYCGY 31 (48)
T ss_dssp SSSCCTTTCC
T ss_pred CCcccCccCc
Confidence 4456666664
No 125
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=27.79 E-value=40 Score=23.27 Aligned_cols=42 Identities=17% Similarity=0.479 Sum_probs=27.5
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccc
Q 021224 203 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 255 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d 255 (316)
....|+.|.+.+.... .++ ..=|..+|.+|+ +|-.|++++.+
T Consensus 10 ~~~~C~~C~~~i~~~e-~~~-~~~~~~~H~~CF---------~C~~C~~~L~~ 51 (72)
T 3f6q_B 10 ASATCERCKGGFAPAE-KIV-NSNGELYHEQCF---------VCAQCFQQFPE 51 (72)
T ss_dssp TTCBCTTTCCBCCTTC-EEE-EETTEEEETTTS---------SCTTTCCCCGG
T ss_pred CCccchhcCccccCCc-eEE-EeCcCeeCcCCC---------cccCCCCCCCC
Confidence 4567999988765432 222 234777887765 68888888764
No 126
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=27.62 E-value=26 Score=29.43 Aligned_cols=21 Identities=29% Similarity=1.002 Sum_probs=15.5
Q ss_pred cCCCCC--CCC--cc----ceeecCcccc
Q 021224 132 KQVCVN--CGV--CM----GEYFCESCKL 152 (316)
Q Consensus 132 ~~~C~~--Cg~--~f----~~YfC~~C~l 152 (316)
...||+ ||. -| .|+||++|.+
T Consensus 118 ~~~c~~~~cg~g~fma~h~~r~~cgkc~~ 146 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLANHKDRLYCGKCHS 146 (152)
T ss_dssp SCBCCSTTSCSSSBEEECSSCEEESSSSS
T ss_pred cCcCCCccCCCceEecccCCCcccCCCce
Confidence 577999 987 33 5788888854
No 127
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=27.54 E-value=28 Score=25.95 Aligned_cols=7 Identities=43% Similarity=1.360 Sum_probs=3.6
Q ss_pred ecCCCCc
Q 021224 163 HCDGCGI 169 (316)
Q Consensus 163 HC~~Cgi 169 (316)
+|..||-
T Consensus 47 rCp~CG~ 53 (70)
T 1twf_L 47 RCKDCGH 53 (70)
T ss_dssp CCSSSCC
T ss_pred cCCCCCc
Confidence 5555553
No 128
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=27.45 E-value=42 Score=21.40 Aligned_cols=13 Identities=23% Similarity=0.524 Sum_probs=7.4
Q ss_pred CCCCCCCccccch
Q 021224 244 YACPICSKSVCDM 256 (316)
Q Consensus 244 ~~CPiCrks~~d~ 256 (316)
|.|++|.+.+...
T Consensus 2 ~~C~~C~~~f~~~ 14 (57)
T 1bbo_A 2 YICEECGIRXKKP 14 (57)
T ss_dssp CBCTTTCCBCSSH
T ss_pred CcCCCCcCcCCCH
Confidence 4566666665543
No 129
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=27.39 E-value=27 Score=27.01 Aligned_cols=21 Identities=24% Similarity=0.581 Sum_probs=17.3
Q ss_pred eeecCCcCccc-cCCCCCCCCc
Q 021224 121 QVICSLCGTEQ-KQVCVNCGVC 141 (316)
Q Consensus 121 ~v~C~~C~~~Q-~~~C~~Cg~~ 141 (316)
.-.|..|...+ .+.|||||..
T Consensus 23 ~rAC~~C~~v~~~d~CPnCgs~ 44 (81)
T 3p8b_A 23 EKACRHCHYITSEDRCPVCGSR 44 (81)
T ss_dssp CEEETTTCBEESSSSCTTTCCC
T ss_pred HHHHhhCCCccCCCCCCCCCCC
Confidence 34699999998 7789999874
No 130
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.28 E-value=6.4 Score=27.51 Aligned_cols=45 Identities=22% Similarity=0.601 Sum_probs=29.0
Q ss_pred CCCCCCcccccccccCCceeEE-cCCCCccchhHHHHHHhc---CCCCCCCCCc
Q 021224 202 AMHHDCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEMREH---HQYACPICSK 251 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~~v~-LpCGH~fH~~Ci~~wl~~---~~~~CPiCrk 251 (316)
..+..|.||.+. . .++. -.|.-.||..|+..-+.. ....||.|.+
T Consensus 7 ~~~~~C~vC~~~----g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS----G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS----S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC----C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 346779999863 1 2222 267899999999864432 3456887754
No 131
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=26.89 E-value=23 Score=32.77 Aligned_cols=20 Identities=30% Similarity=1.094 Sum_probs=13.7
Q ss_pred cCCCCCCCC----------ccceeecCccc
Q 021224 132 KQVCVNCGV----------CMGEYFCESCK 151 (316)
Q Consensus 132 ~~~C~~Cg~----------~f~~YfC~~C~ 151 (316)
...||+||. +.+..||+.|+
T Consensus 34 n~yCPnCG~~~l~~f~nN~PVaDF~C~~C~ 63 (257)
T 4esj_A 34 QSYCPNCGNNPLNHFENNRPVADFYCNHCS 63 (257)
T ss_dssp HCCCTTTCCSSCEEC----CCCEEECTTTC
T ss_pred CCcCCCCCChhhhhccCCCcccccccCCcc
Confidence 578999998 34556666663
No 132
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=26.88 E-value=25 Score=26.23 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=25.0
Q ss_pred ceeecCCcCccc--------cCCCCCCCCccceeecCccccc
Q 021224 120 NQVICSLCGTEQ--------KQVCVNCGVCMGEYFCESCKLF 153 (316)
Q Consensus 120 ~~v~C~~C~~~Q--------~~~C~~Cg~~f~~YfC~~C~l~ 153 (316)
-.|.|.-|..+| ...|..||..+++-.=++-+|-
T Consensus 6 m~VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~PTGGKA~l~ 47 (66)
T 1qxf_A 6 VKVKCPDCEHEQVIFDHPSTIVKCIICGRTVAEPTGGKGNIK 47 (66)
T ss_dssp EEEECTTTCCEEEEESSCSSCEECSSSCCEEEECCSSSCEEC
T ss_pred EEEECCCCCCceEEEecCceEEEcccCCCEEeecCCcceeee
Confidence 368888898886 3568999988877665555554
No 133
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=26.88 E-value=39 Score=17.78 Aligned_cols=15 Identities=33% Similarity=0.886 Sum_probs=11.7
Q ss_pred CCCCCCCccccchhH
Q 021224 244 YACPICSKSVCDMSK 258 (316)
Q Consensus 244 ~~CPiCrks~~d~~~ 258 (316)
|.|++|.+.+.....
T Consensus 2 ~~C~~C~k~f~~~~~ 16 (27)
T 1znf_A 2 YKCGLCERSFVEKSA 16 (27)
T ss_dssp CBCSSSCCBCSSHHH
T ss_pred ccCCCCCCcCCCHHH
Confidence 679999999886543
No 134
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=25.93 E-value=53 Score=17.41 Aligned_cols=16 Identities=31% Similarity=0.671 Sum_probs=12.5
Q ss_pred CCCCCCCCccccchhH
Q 021224 243 QYACPICSKSVCDMSK 258 (316)
Q Consensus 243 ~~~CPiCrks~~d~~~ 258 (316)
.|.|++|.+.+.....
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (30)
T 1klr_A 2 TYQCQYCEFRSADSSN 17 (30)
T ss_dssp CCCCSSSSCCCSCSHH
T ss_pred CccCCCCCCccCCHHH
Confidence 3789999999986543
No 135
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=25.28 E-value=15 Score=24.61 Aligned_cols=9 Identities=44% Similarity=0.752 Sum_probs=3.9
Q ss_pred CeeecCCCC
Q 021224 160 KQYHCDGCG 168 (316)
Q Consensus 160 ~~yHC~~Cg 168 (316)
.+|-|+.||
T Consensus 39 ~~~~C~~C~ 47 (66)
T 2drp_A 39 KVYPCPFCF 47 (66)
T ss_dssp CCEECTTTC
T ss_pred cCeECCCCC
Confidence 344444443
No 136
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=24.84 E-value=33 Score=24.97 Aligned_cols=17 Identities=29% Similarity=0.724 Sum_probs=13.1
Q ss_pred CCCCCCCCCccccchhH
Q 021224 242 HQYACPICSKSVCDMSK 258 (316)
Q Consensus 242 ~~~~CPiCrks~~d~~~ 258 (316)
..|.|++|.+.+.....
T Consensus 44 ~~~~C~~C~~~f~~~~~ 60 (106)
T 2ee8_A 44 RPYTCDICHKAFRRQDH 60 (106)
T ss_dssp CCCBCSSSCCBCSCHHH
T ss_pred CCcCCCCccchhCCHHH
Confidence 35889999999886543
No 137
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=24.80 E-value=89 Score=23.36 Aligned_cols=21 Identities=19% Similarity=0.602 Sum_probs=10.8
Q ss_pred cceecC-CCCeeeccCccccee
Q 021224 169 ICRIGG-CDNFFHCNKCRCCYS 189 (316)
Q Consensus 169 iCR~G~-~~~ffHC~~C~~C~s 189 (316)
||+.++ .+....|+.|..-|-
T Consensus 31 vC~~~~d~~~ll~CD~C~~~yH 52 (77)
T 3shb_A 31 LCGGRQDPDKQLMCDECDMAFH 52 (77)
T ss_dssp TTCCCSCGGGEEECTTTCCEEE
T ss_pred ccCCCCCCcceeEeCCCCCccC
Confidence 444443 245666666665443
No 138
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=24.76 E-value=41 Score=23.38 Aligned_cols=35 Identities=26% Similarity=0.604 Sum_probs=17.6
Q ss_pred CCCCCCCCccceeecCccccccCCCCCCeeecCCCC
Q 021224 133 QVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCG 168 (316)
Q Consensus 133 ~~C~~Cg~~f~~YfC~~C~l~ddd~~k~~yHC~~Cg 168 (316)
..||.||..-+.|+=..=+ =.|++..-.|.|..||
T Consensus 16 ~~Cp~Cg~~~~~~~q~Q~r-sadep~T~fy~C~~Cg 50 (57)
T 1qyp_A 16 ITCPKCGNDTAYWWEMQTR-AGDEPSTIFYKCTKCG 50 (57)
T ss_dssp CCCTTTCCSEEEEEEECCS-SSSCSSEEEEEESSSC
T ss_pred eECCCCCCCEEEEEEeecc-cCCCCCcEEEEcCCCC
Confidence 4577788766555400000 0233445556666665
No 139
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=24.08 E-value=30 Score=24.07 Aligned_cols=13 Identities=31% Similarity=0.812 Sum_probs=8.0
Q ss_pred CCCCCCCccccch
Q 021224 244 YACPICSKSVCDM 256 (316)
Q Consensus 244 ~~CPiCrks~~d~ 256 (316)
|.|++|.+.+...
T Consensus 5 y~C~~C~k~F~~~ 17 (60)
T 4gzn_C 5 FFCNFCGKTYRDA 17 (60)
T ss_dssp EECTTTCCEESSH
T ss_pred ccCCCCCCEeCCH
Confidence 5566666666554
No 140
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=23.91 E-value=47 Score=17.63 Aligned_cols=16 Identities=13% Similarity=0.758 Sum_probs=12.4
Q ss_pred CCCCCCCCccccchhH
Q 021224 243 QYACPICSKSVCDMSK 258 (316)
Q Consensus 243 ~~~CPiCrks~~d~~~ 258 (316)
.|.|++|.+.+.....
T Consensus 2 ~~~C~~C~~~f~~~~~ 17 (29)
T 1ard_A 2 SFVCEVCTRAFARQEH 17 (29)
T ss_dssp CCBCTTTCCBCSSHHH
T ss_pred CeECCCCCcccCCHHH
Confidence 3789999999886543
No 141
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=23.29 E-value=57 Score=30.62 Aligned_cols=23 Identities=30% Similarity=0.728 Sum_probs=19.7
Q ss_pred cceeecCCcCccc---cCCCCCCCCc
Q 021224 119 VNQVICSLCGTEQ---KQVCVNCGVC 141 (316)
Q Consensus 119 v~~v~C~~C~~~Q---~~~C~~Cg~~ 141 (316)
.+-+.|+.|+++= -..|++||..
T Consensus 206 ~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 206 LRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp EEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 3479999999994 6899999987
No 142
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.24 E-value=48 Score=17.41 Aligned_cols=16 Identities=25% Similarity=0.694 Sum_probs=12.3
Q ss_pred CCCCCCCCccccchhH
Q 021224 243 QYACPICSKSVCDMSK 258 (316)
Q Consensus 243 ~~~CPiCrks~~d~~~ 258 (316)
.|.|+.|.+.+.....
T Consensus 2 ~~~C~~C~~~f~~~~~ 17 (29)
T 2m0e_A 2 EHKCPHCDKKFNQVGN 17 (29)
T ss_dssp CCCCSSCCCCCCTTTH
T ss_pred CCcCCCCCcccCCHHH
Confidence 3789999999876543
No 143
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.16 E-value=46 Score=23.30 Aligned_cols=40 Identities=20% Similarity=0.478 Sum_probs=26.9
Q ss_pred CCCCccccccccc--CCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCcccc
Q 021224 204 HHDCPVCCEYLFE--TRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 254 (316)
Q Consensus 204 ~~~CPIClE~lf~--s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~ 254 (316)
...|+.|.+.+.. +.. + +..-|..+|.+| ++|-.|++++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~-~~a~~~~wH~~C---------F~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTK-Y-ISFEERQWHNDC---------FNCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCS-C-EECSSCEECTTT---------CBCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcc-e-EEECCcccCccc---------CEeccCCCcCC
Confidence 4578999887654 222 2 233588888766 56888998875
No 144
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=23.03 E-value=25 Score=26.35 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=18.8
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchhHH
Q 021224 202 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCL 235 (316)
Q Consensus 202 ~~~~~CPIClE~lf~s~~~~v~LpCGH~fH~~Ci 235 (316)
.....|..|.+.+.... .+ +..=|..||.+|+
T Consensus 64 ~~~~~C~~C~~~I~~~~-~~-~~a~~~~~H~~CF 95 (101)
T 2cup_A 64 EDSPKCKGCFKAIVAGD-QN-VEYKGTVWHKDCF 95 (101)
T ss_dssp CCCCBCSSSCCBCCSSS-CE-EESSSCEEETTTC
T ss_pred hcCCccccCCCccccCC-eE-EEeCCcchHHhCC
Confidence 34457888887654322 22 2234788887764
No 145
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=22.91 E-value=65 Score=35.02 Aligned_cols=49 Identities=14% Similarity=0.178 Sum_probs=40.1
Q ss_pred CCCCCCCcccccccccCCceeEEcCCC-CccchhHHHHHHhcCCCCCCCCCcccc
Q 021224 201 GAMHHDCPVCCEYLFETRQDVIVLPCG-HTIHKNCLKEMREHHQYACPICSKSVC 254 (316)
Q Consensus 201 ~~~~~~CPIClE~lf~s~~~~v~LpCG-H~fH~~Ci~~wl~~~~~~CPiCrks~~ 254 (316)
-..+-.|||=++- .. ++|++|=| ++|=+..|.+|+.. +.+||+=|.++.
T Consensus 888 iP~~F~cPIs~~l-M~---DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~ 937 (968)
T 3m62_A 888 VPDEFLDPLMYTI-MK---DPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLK 937 (968)
T ss_dssp SCGGGBCTTTCSB-CS---SEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCC
T ss_pred CcHHhCCcchhhH-Hh---CCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCC
Confidence 3456779999984 33 58899998 69999999999985 579999998776
No 146
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=22.66 E-value=32 Score=24.90 Aligned_cols=29 Identities=28% Similarity=0.677 Sum_probs=22.2
Q ss_pred ceEEcCCCCCCccccceeeeecCCCCCCcccccc
Q 021224 281 VWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLT 314 (316)
Q Consensus 281 ~~IlCnDC~~~s~~~fH~lg~kC~~C~SyNT~~~ 314 (316)
..+.|..|++. ...| +-|+.||.|+-+++
T Consensus 29 ~l~~c~~cGe~--~~~H---~vc~~CG~Y~gr~V 57 (60)
T 3v2d_5 29 TLVPCPECKAM--KPPH---TVCPECGYYAGRKV 57 (60)
T ss_dssp CCEECTTTCCE--ECTT---SCCTTTCEETTEEC
T ss_pred ceeECCCCCCe--ecce---EEcCCCCcCCCEEe
Confidence 46889999974 3344 45999999999875
No 147
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.11 E-value=37 Score=26.45 Aligned_cols=46 Identities=20% Similarity=0.528 Sum_probs=28.2
Q ss_pred CCCCCcccccccccCCceeEEcC-----CC-CccchhHHHHHH-hcCCCCCCCCCcccc
Q 021224 203 MHHDCPVCCEYLFETRQDVIVLP-----CG-HTIHKNCLKEMR-EHHQYACPICSKSVC 254 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~~v~Lp-----CG-H~fH~~Ci~~wl-~~~~~~CPiCrks~~ 254 (316)
....| ||....+ + . ++- |. ..||..|+.--. ....+.||.|++...
T Consensus 35 e~~yC-iC~~~~~--g--~-MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 35 EPTYC-LCHQVSY--G--E-MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCBCS-TTCCBCC--S--C-CCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCCS
T ss_pred CCcEE-ECCCCCC--C--C-EeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcCC
Confidence 34567 9987422 2 1 333 54 689999998211 114588999986543
No 148
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=21.93 E-value=47 Score=19.10 Aligned_cols=16 Identities=25% Similarity=0.760 Sum_probs=12.7
Q ss_pred CCCCCCCCccccchhH
Q 021224 243 QYACPICSKSVCDMSK 258 (316)
Q Consensus 243 ~~~CPiCrks~~d~~~ 258 (316)
.|.||+|.+.+.....
T Consensus 11 ~~~C~~C~k~f~~~~~ 26 (37)
T 1p7a_A 11 PFQCPDCDRSFSRSDH 26 (37)
T ss_dssp SBCCTTTCCCBSSHHH
T ss_pred CccCCCCCcccCcHHH
Confidence 4889999999986543
No 149
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=21.89 E-value=1.1e+02 Score=22.08 Aligned_cols=25 Identities=20% Similarity=0.545 Sum_probs=20.0
Q ss_pred cccceeecCCcCccc---cCCCCCCCCc
Q 021224 117 HEVNQVICSLCGTEQ---KQVCVNCGVC 141 (316)
Q Consensus 117 ~~v~~v~C~~C~~~Q---~~~C~~Cg~~ 141 (316)
+....+||+.|+... +..|-.||..
T Consensus 15 ~~~~k~ICrkC~ARnp~~A~~CRKCg~~ 42 (56)
T 2ayj_A 15 RVFLKKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp CSCCCEEETTTCCEECTTCSSCTTTCCC
T ss_pred HHhchhhhccccCcCCcccccccCCCCC
Confidence 345689999999886 8899988854
No 150
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=21.87 E-value=29 Score=26.55 Aligned_cols=50 Identities=22% Similarity=0.513 Sum_probs=31.4
Q ss_pred CCCCCcccccccccCCceeEEc--CCCCccchhHHHHHH-hcCCCCCCCCCccc
Q 021224 203 MHHDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMR-EHHQYACPICSKSV 253 (316)
Q Consensus 203 ~~~~CPIClE~lf~s~~~~v~L--pCGH~fH~~Ci~~wl-~~~~~~CPiCrks~ 253 (316)
.+..|.||.+.-.++ ...+++ .|.-.||..|+..-+ -.+...||.|....
T Consensus 24 ~~~~C~vC~~~~s~~-~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 24 EDAVCSICMDGESQN-SNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCSSCCSSSSCS-EEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCcCCcCCCCCCCC-CCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 467899999631111 122232 577899999998632 22456798887544
No 151
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.48 E-value=45 Score=23.89 Aligned_cols=17 Identities=41% Similarity=0.975 Sum_probs=8.8
Q ss_pred CCCCCCCccceeecCccc
Q 021224 134 VCVNCGVCMGEYFCESCK 151 (316)
Q Consensus 134 ~C~~Cg~~f~~YfC~~C~ 151 (316)
.|.-|+. .++|.|+.|.
T Consensus 14 ~C~vC~~-~~kY~CPrC~ 30 (56)
T 2yqq_A 14 VCVICLE-KPKYRCPACR 30 (56)
T ss_dssp CCTTTCS-CCSEECTTTC
T ss_pred ccCcCcC-CCeeeCCCCC
Confidence 3444555 5555555553
No 152
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.33 E-value=91 Score=22.04 Aligned_cols=68 Identities=19% Similarity=0.429 Sum_probs=42.0
Q ss_pred CCCCccccccccc--CCceeEEcCCCCccchhHHHHHHhcCCCCCCCCCccccchhHHHHHhHHHHHcCCCChhhhcCcc
Q 021224 204 HHDCPVCCEYLFE--TRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKV 281 (316)
Q Consensus 204 ~~~CPIClE~lf~--s~~~~v~LpCGH~fH~~Ci~~wl~~~~~~CPiCrks~~d~~~~~~~lD~~ia~~pmP~ey~~~~~ 281 (316)
...|+.|.+.+.. ..+.+. .=|..+|.+| ++|-.|++++.... |.....
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~--a~~~~wH~~C---------F~C~~C~~~L~~~~------------------f~~~~g 55 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFIC--FQDSQWHSEC---------FNCGKCSVSLVGKG------------------FLTQNK 55 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEE--ETTEEEEGGG---------CBCTTTCCBCSSSC------------------EEEETT
T ss_pred CCCCccCCCcccCCCCceeEE--ECCcccCccc---------CChhhCCCcCCCCc------------------eEeECC
Confidence 4579999987664 223333 3478888876 56889998876311 112224
Q ss_pred eEEcCCCCCCccccceeeeecCCCC
Q 021224 282 WILCNDCGKTSNVQFHVLAQKCPNC 306 (316)
Q Consensus 282 ~IlCnDC~~~s~~~fH~lg~kC~~C 306 (316)
.++|.+|-.+- .+.+|..+
T Consensus 56 ~~yC~~cy~~~------f~~~C~~~ 74 (76)
T 1x68_A 56 EIFCQKCGSGM------DTDISGPS 74 (76)
T ss_dssp EEEETTTTCCC------CCCSSSSS
T ss_pred EEECHHHhhhh------hCCcCCCC
Confidence 68999887542 34566544
No 153
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=20.89 E-value=43 Score=22.99 Aligned_cols=13 Identities=38% Similarity=1.127 Sum_probs=9.4
Q ss_pred cceeecCcccc-cc
Q 021224 142 MGEYFCESCKL-FD 154 (316)
Q Consensus 142 f~~YfC~~C~l-~d 154 (316)
|.+|-|.+|-+ ||
T Consensus 2 m~~y~C~vCGyvyd 15 (46)
T 6rxn_A 2 MQKYVCNVCGYEYD 15 (46)
T ss_dssp CCCEEETTTCCEEC
T ss_pred CCEEECCCCCeEEe
Confidence 67788888865 44
No 154
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=20.85 E-value=43 Score=30.67 Aligned_cols=20 Identities=30% Similarity=0.976 Sum_probs=15.5
Q ss_pred cCCCCCCCCcc--------ceeecCccc
Q 021224 132 KQVCVNCGVCM--------GEYFCESCK 151 (316)
Q Consensus 132 ~~~C~~Cg~~f--------~~YfC~~C~ 151 (316)
++.|+.||..+ +.|||+.|.
T Consensus 245 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 245 GNPCKRCGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred cCCCCCCCCeEEEEEECCCCeEECCCCC
Confidence 57899999888 467787773
No 155
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=20.74 E-value=33 Score=26.33 Aligned_cols=32 Identities=25% Similarity=0.541 Sum_probs=22.3
Q ss_pred cCCCCCCCCccceeecCccccccCCCCCCeeecCCCCcceecC
Q 021224 132 KQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGG 174 (316)
Q Consensus 132 ~~~C~~Cg~~f~~YfC~~C~l~ddd~~k~~yHC~~CgiCR~G~ 174 (316)
...||+||... +| ++...+++|+.||-=-.||
T Consensus 27 ~y~Cp~CG~~~---------v~--r~atGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 27 DHACPNCGEDR---------VD--RQGTGIWQCSYCDYKFTGG 58 (83)
T ss_dssp CEECSSSCCEE---------EE--EEETTEEEETTTCCEEECC
T ss_pred cCcCCCCCCcc---------ee--ccCCCeEECCCCCCEecCC
Confidence 34577777632 23 3456899999999888887
No 156
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=20.64 E-value=55 Score=17.55 Aligned_cols=16 Identities=25% Similarity=0.727 Sum_probs=12.2
Q ss_pred CCCCCCCCccccchhH
Q 021224 243 QYACPICSKSVCDMSK 258 (316)
Q Consensus 243 ~~~CPiCrks~~d~~~ 258 (316)
.|.|+.|.+.+.....
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (30)
T 1paa_A 2 AYACGLCNRAFTRRDL 17 (30)
T ss_dssp CSBCTTTCCBCSSSHH
T ss_pred CcCCcccCcccCChHH
Confidence 3789999999876543
No 157
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=20.49 E-value=58 Score=22.91 Aligned_cols=25 Identities=20% Similarity=0.511 Sum_probs=10.9
Q ss_pred ceeecCccccccCCCCCCeeecCCC
Q 021224 143 GEYFCESCKLFDDDTSKKQYHCDGC 167 (316)
Q Consensus 143 ~~YfC~~C~l~ddd~~k~~yHC~~C 167 (316)
+..+|.+|..-+++....+.-||.|
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C 29 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKC 29 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSS
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCC
Confidence 3445555554332223344444444
No 158
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=20.16 E-value=49 Score=23.86 Aligned_cols=29 Identities=31% Similarity=0.652 Sum_probs=22.5
Q ss_pred ceEEcCCCCCCccccceeeeecCCCCCCcccccc
Q 021224 281 VWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLT 314 (316)
Q Consensus 281 ~~IlCnDC~~~s~~~fH~lg~kC~~C~SyNT~~~ 314 (316)
..+.|..|++. ...| +-|+.||-|+-+++
T Consensus 29 ~l~~c~~cG~~--~~pH---~vc~~CG~Y~gr~v 57 (60)
T 2zjr_Z 29 NLTECPQCHGK--KLSH---HICPNCGYYDGRQV 57 (60)
T ss_dssp CCEECTTTCCE--ECTT---BCCTTTCBSSSBCS
T ss_pred CceECCCCCCE--eCCc---eEcCCCCcCCCEEe
Confidence 56789999977 2334 46999999999875
No 159
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=20.10 E-value=57 Score=23.03 Aligned_cols=12 Identities=25% Similarity=0.778 Sum_probs=8.2
Q ss_pred cceeecCccccc
Q 021224 142 MGEYFCESCKLF 153 (316)
Q Consensus 142 f~~YfC~~C~l~ 153 (316)
|.+|.|.+|-+.
T Consensus 1 m~~y~C~~CGyv 12 (55)
T 2v3b_B 1 MRKWQCVVCGFI 12 (55)
T ss_dssp CCEEEETTTCCE
T ss_pred CCcEEeCCCCeE
Confidence 467888888543
No 160
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=20.02 E-value=46 Score=30.36 Aligned_cols=20 Identities=35% Similarity=1.027 Sum_probs=16.0
Q ss_pred cCCCCCCCCcc--------ceeecCccc
Q 021224 132 KQVCVNCGVCM--------GEYFCESCK 151 (316)
Q Consensus 132 ~~~C~~Cg~~f--------~~YfC~~C~ 151 (316)
++.|+.||... +.|||+.|.
T Consensus 242 G~pC~~CG~~I~~~~~~gR~t~~CP~CQ 269 (271)
T 2xzf_A 242 GEKCSRCGAEIQKIKVAGRGTHFCPVCQ 269 (271)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTS
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCCC
Confidence 57799999988 667888873
No 161
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.00 E-value=60 Score=18.41 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=12.8
Q ss_pred CCCCCCCCccccchhH
Q 021224 243 QYACPICSKSVCDMSK 258 (316)
Q Consensus 243 ~~~CPiCrks~~d~~~ 258 (316)
.|.|++|.+.+.....
T Consensus 9 ~~~C~~C~k~f~~~~~ 24 (36)
T 2elr_A 9 THLCDMCGKKFKSKGT 24 (36)
T ss_dssp SCBCTTTCCBCSSHHH
T ss_pred CeecCcCCCCcCchHH
Confidence 4889999999986543
Done!