BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021226
(315 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8R1T1|CHMP7_MOUSE Charged multivesicular body protein 7 OS=Mus musculus GN=Chmp7 PE=1
SV=1
Length = 451
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 127/258 (49%), Gaps = 16/258 (6%)
Query: 11 LLKDH-------VILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQ--DEASA 61
+L DH ++ +E+LK+KA+EV +L S +S ++ + + C DE +
Sbjct: 138 MLGDHKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSALCANSCPDERTF 197
Query: 62 VLSFLTGRGKALYLSISKNEFTEGVKVSLSP-AAVSSISSLDYDVLHLIWTVEKLQLQLD 120
L L + K +++ + + VK + P A VS ++ +D V L+ + + L +++
Sbjct: 198 YLVLLQLQ-KEKRVTVLEQNGEKIVKFARGPHAKVSPVNDVDVGVYQLMQSEQLLSRKVE 256
Query: 121 IIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAE 180
+ + E ++ A + +G K +ALR K + T++ E + L+ V+ +L I ++
Sbjct: 257 SLSQESERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQ 316
Query: 181 STKKVSEAIQIGAQAIK--KNKISVEELQLCLEELEESIDLQKQAEKVIVPSYTG---ID 235
+ + V A Q G A+K ++VE+ + +++++E D Q + + + T D
Sbjct: 317 TDQMVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFD 376
Query: 236 DEDIEEEFKKLEQEVECE 253
E++E+E L Q+ E
Sbjct: 377 SEELEKELDILLQDTTTE 394
>sp|Q8WUX9|CHMP7_HUMAN Charged multivesicular body protein 7 OS=Homo sapiens GN=CHMP7 PE=1
SV=1
Length = 453
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 122/242 (50%), Gaps = 9/242 (3%)
Query: 16 VILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQ--DEASAVLSFLTGRGKAL 73
++ +E+LK+KA+EV +L S +S ++ + + C DE + L L + K
Sbjct: 150 LVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSTLCANSCPDERTFYLVLLQLQ-KEK 208
Query: 74 YLSISKNEFTEGVKVSLSP-AAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKS 132
+++ + + VK + P A VS ++ +D V L+ + + L +++ + + E ++
Sbjct: 209 RVTVLEQNGEKIVKFARGPRAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQEAERCKEE 268
Query: 133 ALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIG 192
A + +G K +ALR K + T++ E + L+ V+ +L I +++ + V A Q G
Sbjct: 269 ARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQMVFNAYQAG 328
Query: 193 AQAIK--KNKISVEELQLCLEELEESIDLQKQAEKVIVPSYTG---IDDEDIEEEFKKLE 247
A+K ++VE+ + +++++E D Q + + + T D E++E+E L
Sbjct: 329 VGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEELEKELDILL 388
Query: 248 QE 249
Q+
Sbjct: 389 QD 390
>sp|Q5R812|CHMP7_PONAB Charged multivesicular body protein 7 OS=Pongo abelii GN=CHMP7 PE=2
SV=1
Length = 453
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 122/242 (50%), Gaps = 9/242 (3%)
Query: 16 VILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQ--DEASAVLSFLTGRGKAL 73
++ +E+LK+KA+EV +L S +S ++ + + C DE + L L + K
Sbjct: 150 LVAVELLKEKAEEVYRLYQSSPLSSHPVVALSELSTLCANSCPDERTFYLVLLQLQ-KEK 208
Query: 74 YLSISKNEFTEGVKVSLSP-AAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKS 132
+++ + + VK + P A VS ++ +D V L+ + + L +++ + + E ++
Sbjct: 209 RVTVLEQNGEKIVKFARGPHAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQEAERCKEE 268
Query: 133 ALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIG 192
A + +G K +ALR K + T++ E + L+ V+ +L I +++ + V A Q G
Sbjct: 269 ARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQMVFNAYQAG 328
Query: 193 AQAIK--KNKISVEELQLCLEELEESIDLQKQAEKVIVPSYTG---IDDEDIEEEFKKLE 247
A+K ++VE+ + +++++E D Q + + + T D E++E+E L
Sbjct: 329 VGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEELEKELDILL 388
Query: 248 QE 249
Q+
Sbjct: 389 QD 390
>sp|Q5ZJB7|CHMP7_CHICK Charged multivesicular body protein 7 OS=Gallus gallus GN=CHMP7
PE=2 SV=1
Length = 448
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 123/246 (50%), Gaps = 17/246 (6%)
Query: 16 VILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGG--QDEASAVLSFLTGRGKAL 73
+I +E+L++KA+EV +L S +S ++ + + + C G DE + L L + +
Sbjct: 148 LIYVELLQEKAEEVYRLYQNSVLSSHPVVALSELRSLCAGVCPDERTFYLLLLQLQKEKK 207
Query: 74 YLSISKN-----EFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEM 128
+ +N +F G+ +SP ++ +D V L+ + + L +++ + + E
Sbjct: 208 VTILEQNGEKIVKFARGLHAKVSP-----MNDVDIGVYQLMQSEQLLSQKVESLSQEAEK 262
Query: 129 SRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEA 188
+ A ++ +G K +ALR K + T+ E+ S L+ V+ +L I +++ + V A
Sbjct: 263 CKDDARSACRAGKKQLALRCLKSKRRTERRIEELHSKLDAVQGILDRIYASQTDQMVFNA 322
Query: 189 IQIGAQAIK--KNKISVEELQLCLEELEESIDLQKQAEKVIVPSYTG---IDDEDIEEEF 243
Q G A+K ++VE+ + +++++E D Q + + + + +D E++E+E
Sbjct: 323 YQAGVGALKLSMKDVTVEKAENLVDQIQELCDTQDEVAQTLAGAGVNGLEMDSEELEKEL 382
Query: 244 KKLEQE 249
L Q+
Sbjct: 383 DSLLQD 388
>sp|Q5FW14|CHMP7_XENTR Charged multivesicular body protein 7 OS=Xenopus tropicalis
GN=chmp7 PE=2 SV=1
Length = 468
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 115/254 (45%), Gaps = 26/254 (10%)
Query: 8 PEILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVLSFLT 67
PEI+ + ++++ + + LLSE + C + C + VL L
Sbjct: 138 PEIIKERAALVLQRYQSSPLRALPLLSEEEVRTLCA-------EICPNPSALNLVLLQLQ 190
Query: 68 GRGKALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWT----VEKLQLQLDIID 123
G K L + + + V+VS+ V IS D + L + E+LQ + D
Sbjct: 191 GDKKICVLERAGKKLVKFVRVSV--GQVDPISESDLGIYELQQSEKLLSERLQSAGEESD 248
Query: 124 RHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNR---VEEVLSLIENAE 180
R E +R A GNK ALR ++ KL + + T L N+ V+ +L I AE
Sbjct: 249 RLTEEARTYNRA----GNKHQALRCLRKRKLLER---RITELQNKQDTVQGILERIAAAE 301
Query: 181 STKKVSEAIQIGAQAIK--KNKISVEELQLCLEELEESIDLQKQAEKVIVP-SYTGIDDE 237
+ +KV A Q+G A+K +++E+ + +++++E DLQ + + S ID E
Sbjct: 302 TDRKVVSAYQMGVSALKLALKDVTMEKAESIVDQIQEYCDLQDDLSQTLASVSDADIDSE 361
Query: 238 DIEEEFKKLEQEVE 251
D+E+E + Q E
Sbjct: 362 DLEKELNDILQNKE 375
>sp|P0C0A3|CHMP6_MOUSE Charged multivesicular body protein 6 OS=Mus musculus GN=Chmp6 PE=2
SV=2
Length = 200
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 98/197 (49%), Gaps = 18/197 (9%)
Query: 96 SSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLT 155
S ++ D +L L +KL+ + + E R A L G K AK L
Sbjct: 11 SRVTEQDRAILQLKQQRDKLRQYQKRVTQQLERERALARQLLRDGRKE----RAKLLLKK 66
Query: 156 KESREKCTSLLNRVEEVLS----LIENAESTK---KVSEAIQIGAQAIKK--NKISVEEL 206
K RE+ LL+R E +S ++++ E T+ KV E +Q+G + + K +S+EE+
Sbjct: 67 KRYREQ---LLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQVGNECLNKMHQVMSIEEV 123
Query: 207 QLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEQE-VEC-ERPKPTVSKTGV 264
+ L+E +E+++ Q+Q ++++ ++T D++ I EE + QE +E E P +
Sbjct: 124 ERILDETQEAVEYQRQIDELLAGNFTQEDEDAILEELNAITQEQMELPEVPSEPLPDRNP 183
Query: 265 NEPAASESAESLRVAFS 281
PA + S ++ VA S
Sbjct: 184 EAPAKARSRQAELVAAS 200
>sp|Q96FZ7|CHMP6_HUMAN Charged multivesicular body protein 6 OS=Homo sapiens GN=CHMP6 PE=1
SV=3
Length = 201
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 95/199 (47%), Gaps = 21/199 (10%)
Query: 96 SSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLT 155
S ++ D +L L +KL+ I + E R A L G K A KL
Sbjct: 11 SRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGRKERA-------KLL 63
Query: 156 KESREKCTSLLNRVEEVLS----LIENAESTK---KVSEAIQIGAQAIKK--NKISVEEL 206
+ + LL+R E +S ++++ E T+ KV E +Q G + + K +S+EE+
Sbjct: 64 LKKKRYQEQLLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQFGNECLNKMHQVMSIEEV 123
Query: 207 QLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEQEVECERP----KPTVSKT 262
+ L+E +E+++ Q+Q ++++ S+T D++ I EE + QE + E P +P K
Sbjct: 124 ERILDETQEAVEYQRQIDELLAGSFTQEDEDAILEELSAITQE-QIELPEVPSEPLPEKI 182
Query: 263 GVNEPAASESAESLRVAFS 281
N P + ++ VA S
Sbjct: 183 PENVPVKARPRQAELVAAS 201
>sp|Q7T0X5|CHMP7_XENLA Charged multivesicular body protein 7 OS=Xenopus laevis GN=chmp7
PE=2 SV=1
Length = 422
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 116/247 (46%), Gaps = 17/247 (6%)
Query: 16 VILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQ----DKCGGQDEASAVLSFLTGRGK 71
+++ EV+K++A V++ S + S ++ ++ + C + VL L G K
Sbjct: 135 LVIPEVIKERAALVLQRYQSSTFRSFPLLCEEEVHTLCAEICPNPSALNLVLLQLQGDKK 194
Query: 72 ALYLSISKNEFTEGVKVSLSPAAVSSISSLDYDVLHLI----WTVEKLQLQLDIIDRHYE 127
L + + + V+VS+ V IS D + L E+LQ + +R E
Sbjct: 195 ICVLERAGQKLVKFVRVSV--GQVEPISESDLGIYQLQQGEKLLSERLQSAGEESNRLTE 252
Query: 128 MSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSE 187
+R A GNK ALR ++ KL + + + + ++ +L I AE+ +KV
Sbjct: 253 EARTYNRA----GNKNQALRCLRKRKLVERRITELQNKQDNIQGILERISAAETDRKVVS 308
Query: 188 AIQIGAQAIKK--NKISVEELQLCLEELEESIDLQKQAEKVIVP-SYTGIDDEDIEEEFK 244
A Q+G A+K+ +++E+ + +++++E DLQ + + + +D +D+E E
Sbjct: 309 AYQMGVSALKQALKDVTLEKAESIVDQIQEYCDLQDDLSQTLSSVTDADVDSDDLERELN 368
Query: 245 KLEQEVE 251
++ Q E
Sbjct: 369 EILQNEE 375
>sp|Q5R861|CHMP6_PONAB Charged multivesicular body protein 6 OS=Pongo abelii GN=CHMP6 PE=2
SV=3
Length = 201
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 16/163 (9%)
Query: 96 SSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLT 155
S ++ D +L L +KL+ I + E R A L G K A KL
Sbjct: 11 SRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGRKERA-------KLL 63
Query: 156 KESREKCTSLLNRVEEVLS----LIENAESTK---KVSEAIQIGAQAIKK--NKISVEEL 206
+ + LL+R E +S ++++ E T+ KV E +Q G + + K +S+EE+
Sbjct: 64 LKKKRYQEQLLDRTENQISSLEAMVQSIEFTQIEMKVMEGLQFGNECLNKMHQVMSIEEV 123
Query: 207 QLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEQE 249
+ L+E +E+++ Q+Q ++++ S+T D++ I EE + QE
Sbjct: 124 ERILDETQEAVEYQRQIDELLAGSFTQEDEDAILEELSAITQE 166
>sp|Q6PBQ2|CHMP7_DANRE Charged multivesicular body protein 7 OS=Danio rerio GN=chmp7 PE=2
SV=1
Length = 457
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/223 (20%), Positives = 118/223 (52%), Gaps = 6/223 (2%)
Query: 10 ILLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCG--GQDEASAVLSFLT 67
+ L++ +++E++K+KA E++ S ++ +++ ++ + DE++ ++ L
Sbjct: 135 VPLEESFVVIELVKEKAAELLAAYRGSALSARSLLSFQELRSLSSHICPDESTLCMALLQ 194
Query: 68 GRGKALYLSISKNEFTEGVKVSLSPAA-VSSISSLDYDVLHLIWTVEKLQLQLDIIDRHY 126
+ + ++++S +E + VK S + VS +S +D + L + + L+ +++ +
Sbjct: 195 LQ-REKHVTVSLHEGEKLVKFSQAGQGRVSPVSEVDLGIYQLQCSEKLLEERVEALGHEA 253
Query: 127 EMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVS 186
E ++ A + L G K+ ALR + K ++ ++ + L V+ +L I N+++ + V
Sbjct: 254 EKCKQQAKSLLKEGKKSQALRCLRGSKRVEKKADRLFAQLETVKGILDRIANSQTDRLVM 313
Query: 187 EAIQIGAQAIKKN--KISVEELQLCLEELEESIDLQKQAEKVI 227
+A Q G A++ + ++VE + +++++E D Q + + +
Sbjct: 314 QAYQAGVAALRISLKGVTVERAENLVDQIQELCDTQDEVNQTL 356
>sp|Q6NU11|CHM6B_XENLA Charged multivesicular body protein 6-B OS=Xenopus laevis
GN=chmp6-b PE=2 SV=3
Length = 200
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 74/139 (53%), Gaps = 2/139 (1%)
Query: 96 SSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLT 155
S ++ D VL L +KL+ I + R+ A LH G K A K+ +
Sbjct: 11 SRVTEQDKAVLQLKQQRDKLKQYQKKITLQLQRERELAKQLLHDGKKEKAKLLLKKKRYQ 70
Query: 156 KESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKNK--ISVEELQLCLEEL 213
++ EK + ++ +E+++ IE A+ KV E +++G + +KK +S+EE++ +EE
Sbjct: 71 EQLLEKTDNQISNLEKMVDDIEFAQIEMKVIEGLKVGNEWLKKMHEVMSIEEVEKIMEET 130
Query: 214 EESIDLQKQAEKVIVPSYT 232
+E I+ Q+Q ++++ S T
Sbjct: 131 QEGIEYQRQIDEMLSGSLT 149
>sp|Q5ZL55|CHMP6_CHICK Charged multivesicular body protein 6 OS=Gallus gallus GN=CHMP6
PE=2 SV=3
Length = 200
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 96 SSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLT 155
S ++ D VL L +KL+ I E R+ A L G K A+ K+ +
Sbjct: 11 SRVTEQDKAVLQLKQQRDKLRQYQKRISLGLERERELARQLLKEGKKEKAMLLLKKKRYQ 70
Query: 156 KESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKK--NKISVEELQLCLEEL 213
++ +K + ++ +E ++ IE + KV E ++IG + + K +S+EE++ + E
Sbjct: 71 EQLLDKTDNQISNLERMVQDIEFTQIEMKVIEGLKIGNECLNKMHQVMSIEEVERIIGET 130
Query: 214 EESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEQE 249
+++++ Q+Q ++++ S T D++ I EE + QE
Sbjct: 131 QDAVEYQRQIDEILAGSLTEEDEDAILEELNAITQE 166
>sp|Q6GMA4|CHM6A_XENLA Charged multivesicular body protein 6-A OS=Xenopus laevis
GN=chmp6-a PE=2 SV=3
Length = 200
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 74/139 (53%), Gaps = 2/139 (1%)
Query: 96 SSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLT 155
S ++ D VL L +KL+ I + R+ A LH G K A K+ +
Sbjct: 11 SRVTEQDKAVLQLKQQRDKLKQYQKKITLQLQRERELAKQLLHDGKKEKAKLLLKKKRYQ 70
Query: 156 KESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKNK--ISVEELQLCLEEL 213
++ EK + ++ +E+++ IE A+ KV E +++G + +KK +S+EE++ ++E
Sbjct: 71 EQLLEKTDNQISNLEKMVEDIEFAQIEMKVIEGLKVGNECLKKMHEVMSIEEVERIMDET 130
Query: 214 EESIDLQKQAEKVIVPSYT 232
+E I+ Q+Q ++++ S T
Sbjct: 131 QEGIEYQRQIDEMLSGSLT 149
>sp|Q7T339|CHMP5_DANRE Charged multivesicular body protein 5 OS=Danio rerio GN=chmp5 PE=2
SV=1
Length = 220
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 76/170 (44%), Gaps = 17/170 (10%)
Query: 82 FTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGN 141
F G P IS +D + + +L +L M K + + G
Sbjct: 5 FGRGKPKGPPPNLTDCISGVDSRAESVDKKIARLDAEL--------MKYKDQMKKMRDGP 56
Query: 142 -----KTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAI 196
K A+R KQ ++ + R++ +E+ I+ + TK EA++IGA+ +
Sbjct: 57 SKNMVKQKAMRVLKQKRMYEGQRDQLMQQSFNMEQANYTIQTLKDTKTTVEAMKIGAKEM 116
Query: 197 KK--NKISVEELQLCLEELEESIDLQKQAEKVIVPSYTG--IDDEDIEEE 242
KK + +++++ ++LE+ ++ + ++ + SY ID++D+E E
Sbjct: 117 KKAYKNVKIDQIEDLQDQLEDMMEDANEVQEALSRSYGTPEIDEDDLEAE 166
>sp|Q503V0|CHMP6_DANRE Charged multivesicular body protein 6 OS=Danio rerio GN=chmp6 PE=2
SV=3
Length = 206
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 74/144 (51%), Gaps = 2/144 (1%)
Query: 96 SSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLT 155
+ ++ D VL L +KL+ I + R+ A L G K AL K+ +
Sbjct: 11 TRVTEQDRAVLQLKQQRDKLKQYQKRITLQMDKERQLAKQLLKDGKKDKALLLLKKKRYQ 70
Query: 156 KESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKNK--ISVEELQLCLEEL 213
+ EK + ++ +E ++ IE A+ KV E +++G +KK +S+EE++ ++E
Sbjct: 71 DQLLEKTENQISNLERMVQDIEFAQIEMKVIEGLKVGNDCLKKMHEVLSIEEVEKIMDET 130
Query: 214 EESIDLQKQAEKVIVPSYTGIDDE 237
++I+ QKQ ++++ S T D+E
Sbjct: 131 HDAIEYQKQIDEMLAGSLTQEDEE 154
>sp|Q54KZ4|CHMP6_DICDI Charged multivesicular body protein 6 OS=Dictyostelium discoideum
GN=chmp6 PE=3 SV=2
Length = 218
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
Query: 139 SGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIK- 197
+G K AL K+ K ++ ++ + L +EE+++ +E AE ++ E+++ G +++K
Sbjct: 54 AGKKNQALLALKKKKYQEKMLDESFANLQNIEELIANVEQAEIQVRIFESLKQGNESLKE 113
Query: 198 -KNKISVEELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEQEVECER-P 255
+ ++S+E+++ +EE E+I Q + + ++ +++D+ E ++E+++ ++ P
Sbjct: 114 IQKEMSLEDVENLMEETAEAIQYQNDISEALSGKFSKEEEDDLLNELDEMEKQLNAQQYP 173
Query: 256 K-PTVSKTGVNEPAASESAESLRVAFSTIGLN 286
K P + P E + +T GLN
Sbjct: 174 KVPETQLPKIELPIEDAIEEGKQRKSTTNGLN 205
>sp|Q753W3|SNF7_ASHGO Vacuolar-sorting protein SNF7 OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SNF7 PE=3
SV=1
Length = 237
Score = 37.0 bits (84), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 132 SALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQI 191
SA L GNK +A K+ K+ + K ++ +E+ L IENA + +A++
Sbjct: 49 SARHFLSKGNKNMAKAALKRKKVFESQLLKIDKQVDSLEQQLYSIENANLNLETMKAMKQ 108
Query: 192 GAQAIK--KNKISVEELQLCLEELEESIDLQKQ-AEKVIVPSYTGIDD 236
GA A+K + VE + ++E+ E ++L ++ +E + P YTG+++
Sbjct: 109 GASAMKHIHEGLDVERVDETMDEIREQVELGEEISEAISRPLYTGVNE 156
>sp|Q86K93|CHMP7_DICDI Charged multivesicular body protein 7 OS=Dictyostelium discoideum
GN=chmp7 PE=3 SV=1
Length = 477
Score = 35.8 bits (81), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 84/175 (48%), Gaps = 10/175 (5%)
Query: 85 GVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTV 144
G+K + V I D+ +L L T E L+ Q + E + S+ K
Sbjct: 230 GIKFAFDGEKVQPIQETDFGILKLQTTYETLKQQESKLLTDIEEISNTIKESIRIKQKNH 289
Query: 145 ALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKK--NKIS 202
AL K+ KL + EK + + E+L IE+A+S +++ E++ G +KK +IS
Sbjct: 290 ALLQLKKKKLLESILEKRATASTNIHEILFSIESAKSNQQIIESLCTGVSTLKKVNQEIS 349
Query: 203 VEELQLCLEELEESIDLQKQAEKVIVPSYTG--------IDDEDIEEEFKKLEQE 249
V+++ L++ +++I Q++ + + + ID++ +E+E ++ Q+
Sbjct: 350 VDQVDSILDDYQDAITNQREIDDAMKSGFNSVESLSSADIDEDQLEKELDQMLQD 404
>sp|Q5FW29|CHMP5_XENTR Charged multivesicular body protein 5 OS=Xenopus tropicalis
GN=chmp5 PE=2 SV=1
Length = 219
Score = 35.4 bits (80), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 60/105 (57%), Gaps = 4/105 (3%)
Query: 142 KTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKK--N 199
K ALR KQ ++ ++ R+ +E+ I++ + TK +A+++GA+ +KK
Sbjct: 62 KQKALRVLKQKRMYEQQRDNLNQQSFNMEQTNYAIQSLKDTKTTVDAMKVGAKEMKKAYK 121
Query: 200 KISVEELQLCLEELEESIDLQKQAEKVIVPSYTG--IDDEDIEEE 242
++ +++++ ++LE+ ++ + ++ + SY ID++D+E E
Sbjct: 122 QVKIDQIEDLQDQLEDMMENANEIQEALSRSYGTPEIDEDDLEAE 166
>sp|O94730|YG0I_SCHPO Uncharacterized protein C1604.18c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC1604.18c PE=3 SV=1
Length = 449
Score = 35.4 bits (80), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 108/231 (46%), Gaps = 22/231 (9%)
Query: 40 SSCIITMKKFQDKCG---------GQDEASAVLSFLTGRGKALYLSISKNEFTEGVKVSL 90
+S I T FQD G +DE +L+++ + L +F ++
Sbjct: 180 TSAIYTWDFFQDTFGSLYWEEGKLNKDEMECLLNWMCYQKHVLIFDSKIIKFLPNSQIDA 239
Query: 91 SPAAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAK 150
A++ S+D V LI + + + ++ E + ++ G KT+A+ + +
Sbjct: 240 QLASIDK--SIDGSVADLIQARASIAQRSEFLNEELEQLSQVLNQAVKKGEKTIAITYLR 297
Query: 151 QLK-LTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQ---AIKKNKISVEEL 206
+ K L+K+ K +S L +++ ++S I+NA K + A+ G++ AI E++
Sbjct: 298 RKKILSKDLERKVSSRL-QLDTIISNIDNAVDNKILLIAMSSGSEALDAILAQMGGTEKV 356
Query: 207 QLCLEELEESIDLQKQAEKVIV---PSYTGIDDEDIEEEFKKL---EQEVE 251
+ LE + +++ ++ + I P ++DE +E+E++ L EQ+VE
Sbjct: 357 EDVLENVNDTLARSEEIDATIQTYNPQNIDLEDEAVEKEWQDLVAEEQKVE 407
>sp|Q6DD52|CHMP5_XENLA Charged multivesicular body protein 5 OS=Xenopus laevis GN=chmp5
PE=2 SV=1
Length = 219
Score = 35.0 bits (79), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 59/105 (56%), Gaps = 4/105 (3%)
Query: 142 KTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKK--N 199
K ALR KQ ++ ++ R+ +E+ I+ + TK +A+++GA+ +KK
Sbjct: 62 KQKALRVLKQKRMYEQQRDNLNQQSFNMEQANYTIQTLKDTKTTVDAMKVGAKEMKKAYK 121
Query: 200 KISVEELQLCLEELEESIDLQKQAEKVIVPSYTG--IDDEDIEEE 242
++ +++++ ++LE+ ++ + ++ + SY ID++D+E E
Sbjct: 122 QVKIDQIEDLQDQLEDMMENANEIQEALSRSYGTPEIDEDDLEAE 166
>sp|Q6BSH2|SNF7_DEBHA Vacuolar-sorting protein SNF7 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=SNF7 PE=3 SV=2
Length = 226
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 95/189 (50%), Gaps = 33/189 (17%)
Query: 127 EMSRKSALASLH-SGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKV 185
+++ + ALA + + NK +A K+ K + + K + ++ +E L+ IE A +
Sbjct: 41 QIADQDALARKYITTNKALAKNALKRKKGYEANLMKIENQIDSLETQLTSIEGANLNLET 100
Query: 186 SEAIQIGAQAIKK--NKISVEELQLCLEELEESIDLQKQ-AEKVIVPSYTGIDDED-IEE 241
+A++ GAQA+K+ + V++++ ++++ E ++L + +E + P T DED ++E
Sbjct: 101 MKAMKQGAQAMKQIHGEYDVDKVENTMDDIREQVELADEISEAISRPVGTEFVDEDELDE 160
Query: 242 EFKKLEQE--------------------VECERPK-PTVSKTGVNEPAAS----ESAESL 276
E L++E E E P PTV+K N+PAAS E E+L
Sbjct: 161 ELAMLQEEEKEHKQQTPAQKAPVAKVSAPEEEMPDFPTVNK---NKPAASTEDDEDEEAL 217
Query: 277 RVAFSTIGL 285
+ + +GL
Sbjct: 218 KALQAEMGL 226
>sp|Q2NIH4|RSMH_AYWBP Ribosomal RNA small subunit methyltransferase H OS=Aster yellows
witches'-broom phytoplasma (strain AYWB) GN=rsmH PE=3
SV=2
Length = 303
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 9/70 (12%)
Query: 176 IENAESTKKVSEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVIVPSYTGID 235
++ S KK+ +A++I +EL+ + LE+S+DL K +++V S+ ++
Sbjct: 190 LQKGHSAKKIFQALRIEVN---------QELESLKQALEQSLDLLKPNARIVVISFHSLE 240
Query: 236 DEDIEEEFKK 245
D I+ FKK
Sbjct: 241 DRIIKHFFKK 250
>sp|Q6FW96|SNF7_CANGA Vacuolar-sorting protein SNF7 OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SNF7
PE=3 SV=1
Length = 228
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 137 LHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAI 196
L GNKT+A K+ K+ + K S ++ +E+ L IE+A + A++ GA+A+
Sbjct: 53 LTRGNKTMAKNALKKKKVYEGQLVKLESQMDSLEQQLFSIESANLNLETMRAMKQGAKAM 112
Query: 197 KK--NKISVEELQLCLEELEESIDLQKQ-AEKVIVPSYTGIDD 236
K + + ++ + ++E+ E ++L ++ ++ + P YTG ++
Sbjct: 113 KSIHSGLDIDRVDETMDEIREQVELGEEISDAISRPLYTGANE 155
>sp|Q6NRM7|CHMP3_XENLA Charged multivesicular body protein 3 OS=Xenopus laevis GN=chmp3
PE=2 SV=3
Length = 220
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 76/147 (51%), Gaps = 10/147 (6%)
Query: 110 WTVEKLQLQLDIIDRHY-------EMSRKSALASLHSGNKTVALRHAKQLKLTKESREKC 162
W++ K++ ++ +IDR E ++S S GN+ + AK++ +K++ K
Sbjct: 19 WSL-KIRKEMRVIDRQIRDIQREQEKVKRSIKESAKKGNREACVILAKEVVQSKKAVNKL 77
Query: 163 TSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIK--KNKISVEELQLCLEELEESIDLQ 220
+ + VL ++N + +VS ++Q + +K +N + + E+Q + EL + +
Sbjct: 78 YASKAHMNSVLMSMKNQLAVLRVSGSLQKSTEVMKAMQNLVKLPEIQATMRELSKEMMKA 137
Query: 221 KQAEKVIVPSYTGIDDEDIEEEFKKLE 247
E+++ ++ G++D+D EE ++E
Sbjct: 138 GIIEEMLEDTFEGMEDQDEMEEQAEME 164
>sp|Q8R6F5|RSMH_FUSNN Ribosomal RNA small subunit methyltransferase H OS=Fusobacterium
nucleatum subsp. nucleatum (strain ATCC 25586 / CIP
101130 / JCM 8532 / LMG 13131) GN=rsmH PE=3 SV=1
Length = 314
Score = 32.3 bits (72), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
Query: 147 RHAKQL-KLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKNKISV-E 204
RHA+++ KL E R+ +S + + ++++LI+ A + + QAI+ I V
Sbjct: 163 RHARKIAKLIVEERK--SSPIEKTSDLITLIKRAYPERASKHPAKKTFQAIR---IEVNR 217
Query: 205 ELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEQEVECERPKPTVSKTGV 264
EL++ + ++++L K ++ + ++ ++D ++ +FK L +C + P GV
Sbjct: 218 ELEVLENAMSKAVELLKVGGRLAIITFHSLEDRIVKNKFKDLATACKCPKDIPICVCGGV 277
>sp|Q5BKM3|CHMP3_XENTR Charged multivesicular body protein 3 OS=Xenopus tropicalis
GN=chmp3 PE=2 SV=4
Length = 220
Score = 32.3 bits (72), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 76/147 (51%), Gaps = 10/147 (6%)
Query: 110 WTVEKLQLQLDIIDRHY-------EMSRKSALASLHSGNKTVALRHAKQLKLTKESREKC 162
W++ K++ ++ +IDR E ++S S GN+ + AK++ +K++ K
Sbjct: 19 WSL-KIRKEMRVIDRQIRDIQREQEKVKRSIKESAKKGNREACVILAKEVVHSKKAVNKL 77
Query: 163 TSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIK--KNKISVEELQLCLEELEESIDLQ 220
+ + VL ++N + +VS ++Q + +K +N + + E+Q + +L + +
Sbjct: 78 YASKAHMNSVLMSMKNQLAVLRVSGSLQKSTEVMKAMQNLVKIPEIQATMRDLSKEMMKA 137
Query: 221 KQAEKVIVPSYTGIDDEDIEEEFKKLE 247
E+++ ++ G++D+D EE ++E
Sbjct: 138 GIIEEMLEDTFEGMEDQDEMEEQAEME 164
>sp|P0C149|SNF7_MAGO7 Vacuolar-sorting protein SNF7 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=SNF7 PE=3 SV=1
Length = 226
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 158 SREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKK--NKISVEELQLCLEELEE 215
S ++ S + +E+ ++ IE+A + EA++ +A++ K++VE++ +++L E
Sbjct: 76 SLDQTLSQIGTLEQQINAIESANINMETLEAMKKAGKAMEDIHGKLTVEKVDETMDKLRE 135
Query: 216 SIDLQKQAEKVIVPSYTG---IDDEDIEEEFKKLEQE 249
L ++ I + G IDD D+E+E + +EQE
Sbjct: 136 QNALSEEIVNAITNNQLGNEAIDDADLEDELEAMEQE 172
>sp|P60397|RSMH_ONYPE Ribosomal RNA small subunit methyltransferase H OS=Onion yellows
phytoplasma (strain OY-M) GN=rsmH PE=3 SV=1
Length = 304
Score = 32.0 bits (71), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Query: 157 ESREKCTSL-LNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKNKISVEELQLCLEELEE 215
+ R CTS L + + + S KK+ +A++I +EL+ + LE+
Sbjct: 171 KQRPLCTSYDLVAITDRFCNRQKGHSAKKIFQALRIEVN---------QELESLKQALEQ 221
Query: 216 SIDLQKQAEKVIVPSYTGIDDEDIEEEFKK 245
S+DL K ++V S+ ++D ++ FKK
Sbjct: 222 SLDLLKPNAMIVVISFHSLEDRIVKHFFKK 251
>sp|Q04B77|RSMH_LACDB Ribosomal RNA small subunit methyltransferase H OS=Lactobacillus
delbrueckii subsp. bulgaricus (strain ATCC BAA-365)
GN=rsmH PE=3 SV=2
Length = 314
Score = 32.0 bits (71), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 26/163 (15%)
Query: 100 SLDYDVLHLIWTVEKLQLQLDIIDRHYE--MSRKSALASLHSGNKTVALRHAKQLKLTKE 157
S D+D L+ ++ QL D++ R+ + SR+ A K V R K ++ T E
Sbjct: 135 SQDFDAYQLVNQYDQKQLA-DVLYRYGDEKFSRQIA-------RKIVERRRGKPIETTFE 186
Query: 158 SREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKNKISV-EELQLCLEELEES 216
L+ ++E + A + ++ + QAI+ + V EL + LEE+
Sbjct: 187 -------LVEIIKEAIP----AAARRRGGHPAKKSFQAIR---VEVNHELDVLRASLEEA 232
Query: 217 IDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEQEVECERPKPTV 259
I L ++ V ++ ++D+ +++ FKK EVE R P V
Sbjct: 233 ISLLNPGGRISVITFQSLEDKIVKQTFKKYS-EVEIPRGMPVV 274
>sp|Q1GAU0|RSMH_LACDA Ribosomal RNA small subunit methyltransferase H OS=Lactobacillus
delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM
20081) GN=rsmH PE=3 SV=1
Length = 314
Score = 32.0 bits (71), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 26/163 (15%)
Query: 100 SLDYDVLHLIWTVEKLQLQLDIIDRHYE--MSRKSALASLHSGNKTVALRHAKQLKLTKE 157
S D+D L+ ++ QL D++ R+ + SR+ A K V R K ++ T E
Sbjct: 135 SQDFDAYQLVNQYDQKQLA-DVLYRYGDEKFSRQIA-------RKIVERRRGKPIETTFE 186
Query: 158 SREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKNKISV-EELQLCLEELEES 216
L+ ++E + A + ++ + QAI+ + V EL + LEE+
Sbjct: 187 -------LVEIIKEAIP----AAARRRGGHPAKKSFQAIR---VEVNHELDVLRASLEEA 232
Query: 217 IDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEQEVECERPKPTV 259
I L ++ V ++ ++D+ +++ FKK EVE R P V
Sbjct: 233 ISLLNPGGRISVITFQSLEDKIVKQTFKKYS-EVEIPRGMPVV 274
>sp|Q21313|EPI1_CAEEL Laminin-like protein epi-1 OS=Caenorhabditis elegans GN=epi-1 PE=1
SV=1
Length = 3672
Score = 31.6 bits (70), Expect = 7.4, Method: Composition-based stats.
Identities = 61/283 (21%), Positives = 116/283 (40%), Gaps = 45/283 (15%)
Query: 18 LMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASAVLSFLTGRGKALYLSI 77
+ E LKDK +E+ ++ + T + + + K +DE S + + + L+L
Sbjct: 2402 ITENLKDKREEMTHAVTTLNETRNDVAEALEAAKKRVRRDEKSVDMQLVNAKAHELHLQA 2461
Query: 78 SKNEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYE-MSRKSALAS 136
+ T + AV + ++ +L T++ + Q ID YE +S + A A
Sbjct: 2462 TTLRQTFDNNKDNTDQAVEAANAFS----NLTDTLKNAKAQ---IDNAYEALSAEPAFAE 2514
Query: 137 LHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAI 196
++++A+ E++EK +L +K VS+ ++
Sbjct: 2515 --------SVQNARDKPFPDETKEKIDAL----------------SKTVSQDLK----ET 2546
Query: 197 KKNKISVEELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEE---EFKKLEQEVEC- 252
+K K +E+L EL E + +K+A K +P Y+ + I+E E +KL+ E++
Sbjct: 2547 EKLKKQLEQLT----ELSEKLRKRKEAVKAGIPKYSKNTLDSIDEKVQEVEKLKAEIDAN 2602
Query: 253 -ERPKPTVSKTGVNEPAASESAESLRVAFSTIGLNDGQATALA 294
E + +S+ +E A S N Q LA
Sbjct: 2603 IEETRAKISEIAGKAEEITEKANSAMEGIRLARRNSVQLNKLA 2645
>sp|A7HN59|SYA_FERNB Alanine--tRNA ligase OS=Fervidobacterium nodosum (strain ATCC 35602
/ DSM 5306 / Rt17-B1) GN=alaS PE=3 SV=1
Length = 867
Score = 31.2 bits (69), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 19/105 (18%)
Query: 113 EKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLK-----------------LT 155
EK+Q Q+D I R M +A LHS + V H +Q LT
Sbjct: 540 EKVQSQVDEIKRKSTMRNHTATHILHSALRKVLGSHVRQAGSLVEPTRLRFDFTHYQALT 599
Query: 156 KESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKNK 200
K+ K +++N V +L I K EA++ GA A+ + K
Sbjct: 600 KDEITKIENIVNEV--ILKAIPVVTEIKSYDEAVKEGAMALFEEK 642
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.126 0.333
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,959,131
Number of Sequences: 539616
Number of extensions: 4001577
Number of successful extensions: 17308
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 480
Number of HSP's that attempted gapping in prelim test: 16914
Number of HSP's gapped (non-prelim): 835
length of query: 315
length of database: 191,569,459
effective HSP length: 117
effective length of query: 198
effective length of database: 128,434,387
effective search space: 25430008626
effective search space used: 25430008626
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)