Query 021226
Match_columns 315
No_of_seqs 198 out of 757
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 08:35:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021226.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021226hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2911 Uncharacterized conser 100.0 1.5E-41 3.3E-46 324.3 25.3 272 13-290 137-426 (439)
2 KOG2910 Uncharacterized conser 100.0 8.1E-33 1.8E-37 238.3 24.1 170 95-264 8-179 (209)
3 PTZ00446 vacuolar sorting prot 100.0 8.3E-32 1.8E-36 237.1 23.7 154 99-252 23-179 (191)
4 PTZ00464 SNF-7-like protein; P 100.0 4.9E-28 1.1E-32 217.2 24.6 158 95-253 11-176 (211)
5 KOG1656 Protein involved in gl 100.0 5.5E-28 1.2E-32 210.4 21.6 156 97-254 16-177 (221)
6 PF03357 Snf7: Snf7; InterPro 99.9 3.9E-25 8.5E-30 191.5 10.5 151 104-254 2-157 (171)
7 KOG1655 Protein involved in va 99.8 4.3E-19 9.2E-24 154.1 21.4 149 102-251 18-175 (218)
8 KOG3230 Vacuolar assembly/sort 98.3 0.00016 3.4E-09 63.7 20.3 136 114-253 27-169 (224)
9 KOG3232 Vacuolar assembly/sort 98.3 0.0014 3.1E-08 56.8 23.5 181 100-284 6-201 (203)
10 KOG3229 Vacuolar sorting prote 98.2 0.00045 9.8E-09 61.4 19.4 151 104-254 19-176 (227)
11 PF04012 PspA_IM30: PspA/IM30 98.0 0.001 2.2E-08 60.2 18.4 150 97-248 38-203 (221)
12 PRK10698 phage shock protein P 97.8 0.0097 2.1E-07 54.3 21.0 130 98-227 40-185 (222)
13 KOG3231 Predicted assembly/vac 97.7 0.011 2.5E-07 51.0 18.7 177 108-284 20-207 (208)
14 TIGR02977 phageshock_pspA phag 97.5 0.041 8.9E-07 50.0 21.0 147 97-247 39-201 (219)
15 COG1842 PspA Phage shock prote 97.5 0.025 5.4E-07 51.7 19.4 148 100-248 42-205 (225)
16 PTZ00464 SNF-7-like protein; P 95.2 2 4.2E-05 39.0 16.5 92 106-198 14-109 (211)
17 PF03357 Snf7: Snf7; InterPro 90.7 0.85 1.8E-05 38.9 6.7 81 111-196 2-87 (171)
18 PTZ00446 vacuolar sorting prot 89.3 16 0.00034 32.7 14.0 74 107-185 24-102 (191)
19 smart00685 DM14 Repeats in fly 88.5 2.2 4.7E-05 30.9 6.2 44 120-163 2-45 (59)
20 KOG1655 Protein involved in va 87.3 20 0.00043 32.2 12.7 92 107-198 16-111 (218)
21 KOG3230 Vacuolar assembly/sort 86.9 23 0.00049 31.8 15.8 170 101-284 21-222 (224)
22 COG5491 VPS24 Conserved protei 85.5 28 0.0006 31.5 15.1 40 158-197 50-89 (204)
23 KOG2911 Uncharacterized conser 83.6 51 0.0011 33.0 15.9 83 96-183 218-306 (439)
24 PF10506 MCC-bdg_PDZ: PDZ doma 80.5 18 0.00039 26.8 8.1 64 107-170 2-66 (67)
25 PF04065 Not3: Not1 N-terminal 75.7 15 0.00032 33.9 8.0 93 101-219 120-212 (233)
26 KOG3229 Vacuolar sorting prote 72.1 77 0.0017 28.7 14.8 41 99-139 28-70 (227)
27 PRK14127 cell division protein 71.4 25 0.00054 28.6 7.4 77 200-284 22-98 (109)
28 PRK04863 mukB cell division pr 71.1 2.2E+02 0.0047 33.4 18.6 17 232-248 433-449 (1486)
29 KOG0994 Extracellular matrix g 70.3 1.3E+02 0.0029 34.1 14.5 134 97-234 1406-1541(1758)
30 PRK04778 septation ring format 70.2 1.1E+02 0.0023 31.9 13.7 147 104-251 106-266 (569)
31 PF06717 DUF1202: Protein of u 67.9 13 0.00028 35.1 5.7 50 91-140 133-182 (308)
32 PF03962 Mnd1: Mnd1 family; I 62.4 1.1E+02 0.0024 27.0 12.1 78 41-133 9-92 (188)
33 PF06160 EzrA: Septation ring 60.3 2.2E+02 0.0047 29.6 17.1 88 101-188 99-192 (560)
34 PF11068 YlqD: YlqD protein; 58.4 61 0.0013 27.2 7.6 64 114-177 24-87 (131)
35 PRK11637 AmiB activator; Provi 58.1 2E+02 0.0043 28.5 15.7 16 182-197 168-183 (428)
36 PRK14162 heat shock protein Gr 58.1 90 0.0019 28.0 9.1 71 101-175 37-108 (194)
37 PF07743 HSCB_C: HSCB C-termin 57.4 76 0.0016 23.4 8.0 44 119-162 33-76 (78)
38 PRK11020 hypothetical protein; 54.8 1.1E+02 0.0024 25.1 8.2 84 115-198 3-87 (118)
39 PF08651 DASH_Duo1: DASH compl 53.9 61 0.0013 24.7 6.3 62 155-229 3-64 (78)
40 COG3883 Uncharacterized protei 53.6 2E+02 0.0043 27.1 17.0 62 181-247 145-217 (265)
41 COG5185 HEC1 Protein involved 52.0 2.8E+02 0.0061 28.4 15.5 50 164-216 327-380 (622)
42 PRK03947 prefoldin subunit alp 50.3 1.5E+02 0.0031 24.6 11.2 38 141-178 91-129 (140)
43 TIGR03687 pupylate_cterm ubiqu 49.5 23 0.0005 22.4 2.7 19 204-222 3-21 (33)
44 PRK14143 heat shock protein Gr 48.4 2E+02 0.0043 26.6 10.0 72 101-175 65-136 (238)
45 PF05377 FlaC_arch: Flagella a 46.6 94 0.002 22.2 5.9 38 98-135 2-39 (55)
46 PF02403 Seryl_tRNA_N: Seryl-t 46.5 1.4E+02 0.0031 23.4 9.3 37 104-140 30-66 (108)
47 PF03961 DUF342: Protein of un 46.5 1.1E+02 0.0023 30.7 8.7 71 106-176 330-408 (451)
48 PRK14160 heat shock protein Gr 46.2 2.3E+02 0.005 25.7 10.3 30 102-131 53-82 (211)
49 PF11285 DUF3086: Protein of u 45.5 1.8E+02 0.0038 27.4 9.0 69 102-170 3-71 (283)
50 KOG3231 Predicted assembly/vac 45.1 2.2E+02 0.0047 25.1 12.6 23 200-222 135-157 (208)
51 KOG3584 cAMP response element 45.1 55 0.0012 31.2 5.8 33 138-170 296-328 (348)
52 TIGR00634 recN DNA repair prot 44.5 3.5E+02 0.0076 27.9 12.3 17 274-290 382-398 (563)
53 COG5570 Uncharacterized small 44.3 81 0.0018 22.3 5.1 44 108-157 3-46 (57)
54 PRK14159 heat shock protein Gr 43.6 2.1E+02 0.0045 25.2 9.0 65 102-176 29-93 (176)
55 COG5124 Protein predicted to b 43.4 2.4E+02 0.0052 25.1 10.8 111 107-229 86-199 (209)
56 PRK14146 heat shock protein Gr 43.4 1.9E+02 0.0041 26.3 8.9 67 105-175 56-123 (215)
57 TIGR00714 hscB Fe-S protein as 40.9 2.1E+02 0.0045 24.5 8.4 49 120-168 107-155 (157)
58 PRK10869 recombination and rep 38.7 4.7E+02 0.01 27.1 14.2 15 274-288 377-391 (553)
59 PF09006 Surfac_D-trimer: Lung 38.6 95 0.0021 21.3 4.7 27 105-131 1-27 (46)
60 KOG0994 Extracellular matrix g 35.8 7.4E+02 0.016 28.6 13.6 77 138-223 1537-1613(1758)
61 cd07637 BAR_ACAP3 The Bin/Amph 35.6 2.5E+02 0.0053 25.2 8.4 71 110-198 2-72 (200)
62 PF10458 Val_tRNA-synt_C: Valy 35.4 1.4E+02 0.0031 21.5 5.7 21 110-130 4-24 (66)
63 PRK05431 seryl-tRNA synthetase 34.5 3.8E+02 0.0083 26.8 10.4 32 104-135 29-60 (425)
64 KOG0995 Centromere-associated 34.2 5.7E+02 0.012 26.8 17.0 84 145-228 260-356 (581)
65 PRK03578 hscB co-chaperone Hsc 34.0 3.2E+02 0.007 23.9 10.0 50 120-169 124-174 (176)
66 PF09340 NuA4: Histone acetylt 33.6 1.1E+02 0.0023 23.4 4.9 31 145-175 4-34 (80)
67 KOG1656 Protein involved in gl 33.4 3.7E+02 0.0081 24.4 15.2 64 130-198 60-123 (221)
68 PF14817 HAUS5: HAUS augmin-li 32.1 6.5E+02 0.014 26.8 13.9 41 26-66 3-46 (632)
69 PF06148 COG2: COG (conserved 31.9 31 0.00067 28.5 1.9 35 97-131 63-97 (133)
70 PLN02943 aminoacyl-tRNA ligase 31.8 1.7E+02 0.0037 32.6 8.0 66 104-169 883-950 (958)
71 PF04012 PspA_IM30: PspA/IM30 31.7 3.7E+02 0.008 23.9 10.0 82 166-249 132-218 (221)
72 COG0172 SerS Seryl-tRNA synthe 31.4 4.5E+02 0.0098 26.5 10.2 70 104-174 30-99 (429)
73 COG5509 Uncharacterized small 30.8 1.7E+02 0.0036 21.3 5.1 48 96-150 15-63 (65)
74 PTZ00419 valyl-tRNA synthetase 30.7 1.6E+02 0.0036 32.7 7.7 66 105-170 924-991 (995)
75 PF04508 Pox_A_type_inc: Viral 30.5 88 0.0019 18.3 3.0 19 112-130 3-21 (23)
76 PRK11637 AmiB activator; Provi 30.3 5.5E+02 0.012 25.4 17.4 32 98-129 91-122 (428)
77 PRK01773 hscB co-chaperone Hsc 30.2 3.7E+02 0.0081 23.4 10.2 50 121-170 122-171 (173)
78 PRK14155 heat shock protein Gr 30.1 4.2E+02 0.009 24.0 9.8 26 152-177 59-84 (208)
79 PF10458 Val_tRNA-synt_C: Valy 30.0 1.5E+02 0.0033 21.4 5.0 27 101-127 2-28 (66)
80 PRK05560 DNA gyrase subunit A; 29.4 7.8E+02 0.017 26.9 12.9 85 165-251 381-475 (805)
81 COG5491 VPS24 Conserved protei 27.9 4.6E+02 0.0099 23.7 14.6 50 101-150 40-89 (204)
82 TIGR02302 aProt_lowcomp conser 27.9 8.6E+02 0.019 26.9 12.9 113 159-286 479-606 (851)
83 PF05816 TelA: Toxic anion res 27.9 5.5E+02 0.012 24.6 20.4 144 103-251 169-326 (333)
84 PRK14158 heat shock protein Gr 27.8 4.4E+02 0.0096 23.5 10.8 33 98-130 35-67 (194)
85 PF12761 End3: Actin cytoskele 27.5 4.6E+02 0.0099 23.6 10.9 84 98-192 91-185 (195)
86 TIGR00414 serS seryl-tRNA synt 27.2 6.3E+02 0.014 25.1 10.6 38 103-140 30-67 (418)
87 PF02388 FemAB: FemAB family; 27.2 2.4E+02 0.0051 28.0 7.5 24 150-173 273-296 (406)
88 PF08946 Osmo_CC: Osmosensory 27.2 1.2E+02 0.0027 20.7 3.7 25 108-132 10-34 (46)
89 PF05659 RPW8: Arabidopsis bro 27.1 3.9E+02 0.0085 22.6 10.2 75 119-198 68-142 (147)
90 PF14712 Snapin_Pallidin: Snap 27.0 2.8E+02 0.0061 21.0 9.0 37 95-131 13-49 (92)
91 PF05667 DUF812: Protein of un 26.5 7.8E+02 0.017 25.9 11.8 137 100-236 391-537 (594)
92 PRK05014 hscB co-chaperone Hsc 26.3 4.3E+02 0.0093 22.9 10.1 47 123-169 123-169 (171)
93 PF06698 DUF1192: Protein of u 25.4 1.6E+02 0.0034 21.3 4.3 19 113-131 24-42 (59)
94 smart00502 BBC B-Box C-termina 25.3 3.2E+02 0.007 21.1 11.8 28 100-127 18-45 (127)
95 PF09440 eIF3_N: eIF3 subunit 24.9 4.1E+02 0.0089 22.2 7.8 49 163-211 75-128 (133)
96 PF12718 Tropomyosin_1: Tropom 24.6 4.3E+02 0.0092 22.3 11.2 28 146-173 76-103 (143)
97 KOG1937 Uncharacterized conser 24.6 7.7E+02 0.017 25.2 13.0 34 202-235 401-434 (521)
98 TIGR01063 gyrA DNA gyrase, A s 24.5 9.5E+02 0.021 26.2 12.7 85 165-251 378-472 (800)
99 KOG2910 Uncharacterized conser 23.9 5.4E+02 0.012 23.2 16.8 81 110-198 16-104 (209)
100 PF13763 DUF4167: Domain of un 23.8 1.6E+02 0.0034 22.7 4.2 38 123-160 36-73 (80)
101 PF10168 Nup88: Nuclear pore c 22.8 8E+02 0.017 26.5 10.8 15 170-184 596-610 (717)
102 PRK09343 prefoldin subunit bet 22.7 1.4E+02 0.0031 24.4 4.2 41 101-141 76-116 (121)
103 COG0576 GrpE Molecular chapero 22.5 5.5E+02 0.012 22.8 10.8 29 152-180 82-110 (193)
104 COG3078 Uncharacterized protei 22.3 1.8E+02 0.0039 25.1 4.7 34 205-246 130-163 (169)
105 PRK14145 heat shock protein Gr 22.0 5.8E+02 0.013 22.9 10.0 70 101-174 43-113 (196)
106 PRK05729 valS valyl-tRNA synth 21.9 3.2E+02 0.0069 30.0 7.8 27 105-131 806-832 (874)
107 PF10158 LOH1CR12: Tumour supp 21.9 4.7E+02 0.01 21.8 9.8 32 147-178 84-115 (131)
108 COG1579 Zn-ribbon protein, pos 21.8 6.5E+02 0.014 23.3 14.6 17 181-197 86-102 (239)
109 PF03961 DUF342: Protein of un 21.8 7.1E+02 0.015 24.9 9.8 29 102-130 333-361 (451)
110 PLN02678 seryl-tRNA synthetase 21.7 8.5E+02 0.018 24.7 10.4 32 104-135 34-65 (448)
111 PF10602 RPN7: 26S proteasome 21.5 5.3E+02 0.012 22.3 9.4 63 111-179 8-83 (177)
112 PRK10636 putative ABC transpor 21.4 7.5E+02 0.016 26.0 10.3 67 111-177 564-632 (638)
113 PRK00464 nrdR transcriptional 21.0 5.4E+02 0.012 22.1 7.8 18 230-247 130-148 (154)
114 PF12128 DUF3584: Protein of u 20.8 1.3E+03 0.028 26.4 17.5 27 199-225 766-792 (1201)
115 TIGR01061 parC_Gpos DNA topois 20.8 1.1E+03 0.023 25.6 12.8 87 163-251 376-472 (738)
116 PHA02562 46 endonuclease subun 20.6 8.9E+02 0.019 24.5 15.7 26 203-228 298-323 (562)
117 PF07195 FliD_C: Flagellar hoo 20.5 3.7E+02 0.0079 24.4 6.9 15 161-175 222-236 (239)
118 PRK14149 heat shock protein Gr 20.4 6.2E+02 0.013 22.6 8.8 23 154-176 84-106 (191)
119 PF06305 DUF1049: Protein of u 20.3 1.4E+02 0.0031 21.1 3.4 24 105-128 43-66 (68)
120 KOG0946 ER-Golgi vesicle-tethe 20.2 1.2E+03 0.026 25.8 11.3 76 172-250 877-955 (970)
121 PF12443 AKNA: AT-hook-contain 20.2 1.1E+02 0.0024 24.7 2.9 36 95-130 44-79 (106)
122 COG1577 ERG12 Mevalonate kinas 20.1 6.6E+02 0.014 24.1 8.7 61 156-216 196-259 (307)
No 1
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.5e-41 Score=324.27 Aligned_cols=272 Identities=26% Similarity=0.364 Sum_probs=230.7
Q ss_pred CCcEeehHhHHHHHHHHH-HHHhhccccc--cccccHhhHHHhhCC-----CchhHHHHHHhhhcCccceeeeecCCcee
Q 021226 13 KDHVILMEVLKDKADEVI-KLLSESHWTS--SCIITMKKFQDKCGG-----QDEASAVLSFLTGRGKALYLSISKNEFTE 84 (315)
Q Consensus 13 ~~~~V~~~~l~e~a~~i~-~~~~~~~~~s--~~v~s~~~F~~~~~~-----~~d~~ilL~yL~~~~~~~~v~v~~~~~~~ 84 (315)
....+.++.+.++|..++ ..++++++++ ++|||+.+|+.+|++ .++++++|+|| ...++|++.+.++++
T Consensus 137 ~e~l~~i~~l~eka~~~~~~ll~~~~~~~~t~~Vvt~nef~tlc~~~~~~~~~t~~l~l~~l---~~~k~i~vg~~~g~k 213 (439)
T KOG2911|consen 137 EERLPLIKLLKEKALDVYAELLHEEVLSECTGAVVTLNEFQTLCSNLGKPDEETKDLVLCWL---AYQKHIIVGESIGIK 213 (439)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHhhhhhhccCceeeeHHHHHHHhccCCCCcHHHHHHHHHHH---HhhhheeeehhcceE
Confidence 345777788888888887 7788888888 999999999999997 24688999999 677888988888889
Q ss_pred eEEeeCC-CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 021226 85 GVKVSLS-PAAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCT 163 (315)
Q Consensus 85 ~IKf~~~-~~~~~~ITe~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~ 163 (315)
.++|+.. ...+.+||+.|.+|++|+.++.+|.+|++.|+++|++++..++++++.|.|+.|++|||+||++||.++++.
T Consensus 214 ~~~f~~i~~~~~~~it~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~ 293 (439)
T KOG2911|consen 214 FLKFSQIPSQDASIITEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKV 293 (439)
T ss_pred EEeeccCCcccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHH
Confidence 9999744 445778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHHHHhCCC-CC--CCCHH
Q 021226 164 SLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKN---KISVEELQLCLEELEESIDLQKQAEKVIVPS-YT--GIDDE 237 (315)
Q Consensus 164 ~~l~nLe~~l~~Ie~a~~n~~v~~al~~g~~aLK~~---~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~-~~--~~De~ 237 (315)
.+++||++++++|++|++|+.|++||++|+.|||.+ +.+.|+|+++||+++|.++.++||+++|+++ .+ +++|+
T Consensus 294 ~~l~~l~~vl~~Id~s~~nkvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~d~~de 373 (439)
T KOG2911|consen 294 SSLNNLETVLSQIDNSQTNKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNIDFEDE 373 (439)
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCccchH
Confidence 999999999999999999999999999999999993 5799999999999999999999999999763 33 67899
Q ss_pred HHHHHHHHHHHHHhhcCC--CCCCCCCCCCCCCC-cccHHHHHHHhhcCccCCCCC
Q 021226 238 DIEEEFKKLEQEVECERP--KPTVSKTGVNEPAA-SESAESLRVAFSTIGLNDGQA 290 (315)
Q Consensus 238 ELe~EL~~Le~E~~~e~~--~p~~~~~~~~~~~~-~~~~~~l~~~L~~L~l~d~~~ 290 (315)
+||+||+.|+.+....+. +|..|.. ...+ -.++.++...+..|+..+++.
T Consensus 374 ~lEkEL~~L~~D~~k~e~~~lp~~~~s---r~~~~r~sd~el~~~~~~le~~~~~~ 426 (439)
T KOG2911|consen 374 DLEKELEDLEADEKKNEDLVLPLNSVS---RDFLKRLSDLELLTNEDSLEKTEGPL 426 (439)
T ss_pred HHHHHHHHHHhccccCCccCCCCCCch---HHHhhhcchhhhccccchhhhhcCcc
Confidence 999999999998876433 1222211 1111 134555566666666655554
No 2
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=100.00 E-value=8.1e-33 Score=238.26 Aligned_cols=170 Identities=27% Similarity=0.369 Sum_probs=162.2
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 021226 95 VSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLS 174 (315)
Q Consensus 95 ~~~ITe~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~ 174 (315)
.++||+.|++|++||.++++|.++...+++.++..+..||.+++.|+|.+|+.+||+|+++|..|.+.++||.||+++++
T Consensus 8 ~~~Itd~DrAIL~lK~QRdkl~qyqkR~e~~le~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqmvs 87 (209)
T KOG2910|consen 8 KSRITDQDRAILSLKTQRDKLKQYQKRLEKQLEAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQMVS 87 (209)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhh
Q 021226 175 LIENAESTKKVSEAIQIGAQAIKKN--KISVEELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEQEVEC 252 (315)
Q Consensus 175 ~Ie~a~~n~~v~~al~~g~~aLK~~--~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~~~De~ELe~EL~~Le~E~~~ 252 (315)
.||.+..++.|++.|+.||.+||+. .+++|+|+++|||.+|++++++||+++|++.++..|+++|.+||++|+.+...
T Consensus 88 diEft~vqk~V~~gLk~GN~~lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls~~dEddi~~EldaLese~~~ 167 (209)
T KOG2910|consen 88 DIEFTQVQKKVMEGLKQGNEALKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLSAEDEDDILAELDALESELEV 167 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999994 77999999999999999999999999999988889999999999999998877
Q ss_pred cCCCCCCCCCCC
Q 021226 253 ERPKPTVSKTGV 264 (315)
Q Consensus 253 e~~~p~~~~~~~ 264 (315)
+...|.+|.+.+
T Consensus 168 e~e~PevPs~ep 179 (209)
T KOG2910|consen 168 EAELPEVPSTEP 179 (209)
T ss_pred hhhcCCCCCCCC
Confidence 654588887753
No 3
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=100.00 E-value=8.3e-32 Score=237.10 Aligned_cols=154 Identities=16% Similarity=0.213 Sum_probs=147.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 021226 99 SSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIEN 178 (315)
Q Consensus 99 Te~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~Ie~ 178 (315)
|....+|++|+.++++|+++...|+.+|+.+...|+.+++.|+|.+|+.|||+||++|++|++..++++||++++..|++
T Consensus 23 ~~~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~ 102 (191)
T PTZ00446 23 DEIYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLEN 102 (191)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHHHHHHhh
Q 021226 179 AESTKKVSEAIQIGAQAIKKN--KISVEELQLCLEELEESIDLQKQAEKVIVPS-YTGIDDEDIEEEFKKLEQEVEC 252 (315)
Q Consensus 179 a~~n~~v~~al~~g~~aLK~~--~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~-~~~~De~ELe~EL~~Le~E~~~ 252 (315)
|..|..||.||+.|+++||.. +|++|+||++||+|+|+++.++||+++|+.+ .+++||+||++||++|+.+...
T Consensus 103 a~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~DEdELe~ELe~Le~e~l~ 179 (191)
T PTZ00446 103 MHLHKIAVNALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLKEQTME 179 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999993 9999999999999999999999999999875 4679999999999999986543
No 4
>PTZ00464 SNF-7-like protein; Provisional
Probab=99.96 E-value=4.9e-28 Score=217.22 Aligned_cols=158 Identities=16% Similarity=0.242 Sum_probs=138.4
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 021226 95 VSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASL---HSGNKTVALRHAKQLKLTKESREKCTSLLNRVEE 171 (315)
Q Consensus 95 ~~~ITe~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~---~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~ 171 (315)
.+++|..| +|-.|+.....|+++|..|+.++..++..++..- +.+.|++|+.|||+||++|++++++.++++||++
T Consensus 11 ~p~~t~~d-~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq 89 (211)
T PTZ00464 11 TPKPTLED-ASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQ 89 (211)
T ss_pred CCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778555 5589999999999999888888777776554221 1225999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHHHHhCCCC---CCCCHHHHHHHHHHH
Q 021226 172 VLSLIENAESTKKVSEAIQIGAQAIKKN--KISVEELQLCLEELEESIDLQKQAEKVIVPSY---TGIDDEDIEEEFKKL 246 (315)
Q Consensus 172 ~l~~Ie~a~~n~~v~~al~~g~~aLK~~--~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~---~~~De~ELe~EL~~L 246 (315)
+...|+++++|..||+||+.|+++||.. +|++|+||++||+|+|+++.++||+++|++++ .++||+||++||++|
T Consensus 90 ~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~L 169 (211)
T PTZ00464 90 LQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGELDAL 169 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999993 99999999999999999999999999998865 478999999999999
Q ss_pred HHHHhhc
Q 021226 247 EQEVECE 253 (315)
Q Consensus 247 e~E~~~e 253 (315)
+.|+..+
T Consensus 170 e~e~~~e 176 (211)
T PTZ00464 170 DFDMEKE 176 (211)
T ss_pred HHHHhcc
Confidence 9987543
No 5
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.5e-28 Score=210.37 Aligned_cols=156 Identities=20% Similarity=0.267 Sum_probs=142.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021226 97 SISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKS-ALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSL 175 (315)
Q Consensus 97 ~ITe~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~-ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~ 175 (315)
+.| -+.+|-.|+.+.+.|.++.+.|+.+|...... |+.|.. ++|..|+.||||||.+|++|.++.+.+.+|+..+..
T Consensus 16 ~~t-~~eaI~kLrEteemL~KKqe~Le~ki~~e~e~~A~k~~t-kNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~a 93 (221)
T KOG1656|consen 16 KPT-PQEAIQKLRETEEMLEKKQEFLEKKIEQEVENNARKYGT-KNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREA 93 (221)
T ss_pred CCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345 56699999999999999999999999888655 665555 489999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCC---CCCCHHHHHHHHHHHHHHH
Q 021226 176 IENAESTKKVSEAIQIGAQAIKK--NKISVEELQLCLEELEESIDLQKQAEKVIVPSY---TGIDDEDIEEEFKKLEQEV 250 (315)
Q Consensus 176 Ie~a~~n~~v~~al~~g~~aLK~--~~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~---~~~De~ELe~EL~~Le~E~ 250 (315)
|++|..|.+|+++|..|+++||. .++++|+|+++||+|.|+.+..+||+++|+.+. .++|||||.+||++|+++.
T Consensus 94 lEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqee 173 (221)
T KOG1656|consen 94 LENANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEE 173 (221)
T ss_pred HHcccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 399999999999999999999999999998754 3799999999999999877
Q ss_pred hhcC
Q 021226 251 ECER 254 (315)
Q Consensus 251 ~~e~ 254 (315)
...+
T Consensus 174 ld~~ 177 (221)
T KOG1656|consen 174 LDKE 177 (221)
T ss_pred HHHH
Confidence 6553
No 6
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=99.92 E-value=3.9e-25 Score=191.48 Aligned_cols=151 Identities=28% Similarity=0.431 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 021226 104 DVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTK 183 (315)
Q Consensus 104 ~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~Ie~a~~n~ 183 (315)
+|++|+.++..|++++..|+.+++.+...|+.+++.|+|..|+.|||++|.+++.++++..++.+|+.++.+|+.+..+.
T Consensus 2 ai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~~ 81 (171)
T PF03357_consen 2 AILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSNQ 81 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHHHHhCCCC---CCCCHHHHHHHHHHHHHHHhhcC
Q 021226 184 KVSEAIQIGAQAIKKN--KISVEELQLCLEELEESIDLQKQAEKVIVPSY---TGIDDEDIEEEFKKLEQEVECER 254 (315)
Q Consensus 184 ~v~~al~~g~~aLK~~--~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~---~~~De~ELe~EL~~Le~E~~~e~ 254 (315)
.|+.+|+.|+++|+.. ++++++|+++|+++++.++.+++|+++|++.+ .++||+||++||++|+.|...+.
T Consensus 82 ~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~~~~dd~ele~eL~~l~~e~~~~~ 157 (171)
T PF03357_consen 82 QVVKALKQSSKALKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQVDDVDDEELEEELEQLEDEIEEEE 157 (171)
T ss_dssp HHSSS----SHHHHHHHHSTTSCCHHHHHHHHHHHHHHHTS----------------TTSTTCHHHHHHHCCCTTS
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999994 89999999999999999999999999998865 57889999999999999877654
No 7
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=4.3e-19 Score=154.07 Aligned_cols=149 Identities=19% Similarity=0.288 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 021226 102 DYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGN-----KTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLI 176 (315)
Q Consensus 102 D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~-----K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~I 176 (315)
--+|-.+...-+.++.+|..|+.++.+++...+ -.|.|. |++|++.||+||+||.+.+.+.++-+|+++.-..+
T Consensus 18 ~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~-k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~ 96 (218)
T KOG1655|consen 18 QDAIDSVNKRSDSVEKKISKLDAELCKYKDQIK-KTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTA 96 (218)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-hcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 347788888888888888888888888886554 235553 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CCCHHHHHHHHHHHHHHHh
Q 021226 177 ENAESTKKVSEAIQIGAQAIKK--NKISVEELQLCLEELEESIDLQKQAEKVIVPSYT--GIDDEDIEEEFKKLEQEVE 251 (315)
Q Consensus 177 e~a~~n~~v~~al~~g~~aLK~--~~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~--~~De~ELe~EL~~Le~E~~ 251 (315)
+.-+++...|.||+.|++.||. ..|++|+|+++-|+|.+.|+..+||+++|+.+++ ++|+++|++||++|..|..
T Consensus 97 e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~peide~dL~aELdaL~~E~d 175 (218)
T KOG1655|consen 97 ESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTPDIDEADLDAELDALGQELD 175 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHHHHhHhh
Confidence 9999999999999999999999 4999999999999999999999999999998765 6899999999999966543
No 8
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.00016 Score=63.74 Aligned_cols=136 Identities=15% Similarity=0.228 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021226 114 KLQLQLDIIDRHYEMSRKSALASLHSGNKT----VALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAI 189 (315)
Q Consensus 114 ~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~----~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~Ie~a~~n~~v~~al 189 (315)
.|......|+.+-.++-..+|..-++|+-. .|+.+.|.| .++.+......||+.+-.+|..-.++-.+..+|
T Consensus 27 eleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR----~~i~kf~~~kaqiqaVSl~iQtlkss~sma~aM 102 (224)
T KOG3230|consen 27 ELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTR----RYIKKFQNMKAQIQAVSLRIQTLKSSTSMAQAM 102 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344444444443333344444455777755 455555555 456677888889999999999999999999999
Q ss_pred HHHHHHHHh-c-CCChHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-CCCHHHHHHHHHHHHHHHhhc
Q 021226 190 QIGAQAIKK-N-KISVEELQLCLEELEESIDLQKQAEKVIVPSYT-GIDDEDIEEEFKKLEQEVECE 253 (315)
Q Consensus 190 ~~g~~aLK~-~-~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~-~~De~ELe~EL~~Le~E~~~e 253 (315)
+-.+++|-. + .+++-.+.++|-+++-+-+..+--.++++...+ ..+++|=|+|-+.|...+.+|
T Consensus 103 kGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd~lvnqVLDE 169 (224)
T KOG3230|consen 103 KGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETDDLVNQVLDE 169 (224)
T ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Confidence 999999999 4 999999999999998888777766666655333 223444456666666555544
No 9
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.0014 Score=56.84 Aligned_cols=181 Identities=17% Similarity=0.274 Sum_probs=120.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021226 100 SLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRH----AKQLKLTKESREKCTSLLNRVEEVLSL 175 (315)
Q Consensus 100 e~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~----Lr~KK~~ek~L~~~~~~l~nLe~~l~~ 175 (315)
.....+++||.+-..|+++-...+++-...+.+.+.++.+|+.+.|+.| +|+|...-..| ..-.++..+..+
T Consensus 6 ~le~~lf~LkF~sk~L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~n~L----rlssRvDAVaaR 81 (203)
T KOG3232|consen 6 KLENHLFDLKFTSKQLQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNEAVNYL----RLSSRVDAVAAR 81 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 3567889999999999988888777766667788999999998887755 55554433332 234567788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHH----HHHhCCCCC-CCCHHHHHHHHHHHHH
Q 021226 176 IENAESTKKVSEAIQIGAQAIKK--NKISVEELQLCLEELEESIDLQKQA----EKVIVPSYT-GIDDEDIEEEFKKLEQ 248 (315)
Q Consensus 176 Ie~a~~n~~v~~al~~g~~aLK~--~~i~~e~Ve~~mddi~E~~~~~~EI----~~~L~~~~~-~~De~ELe~EL~~Le~ 248 (315)
++.|.+-..|-..|..-.+.|-+ ..+++++|-.+||.++-+-++.+== .++++++.. ..+.++++.=+.+.-.
T Consensus 82 vqTavtmr~Vt~sM~gVvK~md~alktmNLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~Vd~Lmq~vAD 161 (203)
T KOG3232|consen 82 VQTAVTMRKVTKSMAGVVKSMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGDVDSLMQQVAD 161 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhHHHHHHHHHHH
Confidence 99999999999999888888887 3899999999999998887766543 444444221 3445555433333322
Q ss_pred ----HHhhcCCCCCCCCCCCCCCCCcccHHHHHHHhhcCc
Q 021226 249 ----EVECERPKPTVSKTGVNEPAASESAESLRVAFSTIG 284 (315)
Q Consensus 249 ----E~~~e~~~p~~~~~~~~~~~~~~~~~~l~~~L~~L~ 284 (315)
|...+-+++-+|..+.+.+..+...++|..+|..|+
T Consensus 162 eaGlElnq~lp~~~~~a~~~~t~~~~~e~d~L~qRLaaLR 201 (203)
T KOG3232|consen 162 EAGLELNQELPQNVVPAISVKTSAVVDEEDDLTQRLAALR 201 (203)
T ss_pred HhchhhhhcCCCCCCCCcCCCCccccchhhHHHHHHHHHh
Confidence 222222222223323222222333388999988774
No 10
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.00045 Score=61.40 Aligned_cols=151 Identities=18% Similarity=0.200 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 021226 104 DVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTK 183 (315)
Q Consensus 104 ~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~Ie~a~~n~ 183 (315)
=-..|++....|.+|+-.|+..-.+.....|++.++|++..++.+-|.--..-+...+++..--.|..+..++..+-...
T Consensus 19 wq~kiRke~r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKAqlnSv~M~l~eqla~~ 98 (227)
T KOG3229|consen 19 WQSKIRKEGRQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKAQLNSVSMQLKEQLATL 98 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHH
Confidence 34567788888888988888888888888888999999998888887777777888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-cCC-ChHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-----CCCHHHHHHHHHHHHHHHhhcC
Q 021226 184 KVSEAIQIGAQAIKK-NKI-SVEELQLCLEELEESIDLQKQAEKVIVPSYT-----GIDDEDIEEEFKKLEQEVECER 254 (315)
Q Consensus 184 ~v~~al~~g~~aLK~-~~i-~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~-----~~De~ELe~EL~~Le~E~~~e~ 254 (315)
-+...|+.|+.+||. +.+ -+=.+-.+|-++.-.|-+.-=|.+++...+. ...+++.++|.+....+...+.
T Consensus 99 r~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeEe~deEVdkIL~~it~~~ 176 (227)
T KOG3229|consen 99 RVAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEEEADEEVDKILTEITGEK 176 (227)
T ss_pred HHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999 444 7888999999999999999888888854222 1246677777777777776654
No 11
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=97.96 E-value=0.001 Score=60.19 Aligned_cols=150 Identities=21% Similarity=0.255 Sum_probs=114.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----
Q 021226 97 SISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEE----- 171 (315)
Q Consensus 97 ~ITe~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~----- 171 (315)
.+.....++..+......|+++++.++..+......|..++..|+-+.|+.+|.+|+.++..+.....++..+..
T Consensus 38 ~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l 117 (221)
T PF04012_consen 38 QLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKL 117 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788889999999999999999999999999999999999999999999999999999998888777665544
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHH
Q 021226 172 ------VLSLIENAESTKKVSEAIQIGAQAIKK-----NKISVEELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIE 240 (315)
Q Consensus 172 ------~l~~Ie~a~~n~~v~~al~~g~~aLK~-----~~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~~~De~ELe 240 (315)
+-.+|...+.....+.+-....++-+. .+++++.....++.|++.++..+--.++..... + +...++
T Consensus 118 ~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea~a~a~~el~-~-~~~~~e 195 (221)
T PF04012_consen 118 KEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEMEARAEASAELA-D-SDQDLE 195 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHHHHHHHhc-c-CcccHH
Confidence 445666667777777776666666665 166777777777777777666665555554411 1 222378
Q ss_pred HHHHHHHH
Q 021226 241 EEFKKLEQ 248 (315)
Q Consensus 241 ~EL~~Le~ 248 (315)
.+|+++..
T Consensus 196 ~~l~~~~~ 203 (221)
T PF04012_consen 196 AELEELER 203 (221)
T ss_pred HHHHHhcC
Confidence 88877754
No 12
>PRK10698 phage shock protein PspA; Provisional
Probab=97.75 E-value=0.0097 Score=54.30 Aligned_cols=130 Identities=9% Similarity=0.061 Sum_probs=96.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH------
Q 021226 98 ISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEE------ 171 (315)
Q Consensus 98 ITe~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~------ 171 (315)
+.+.-.++..+......+++++..++..+......|..++..|+-+.|+.+|.+|+.++..+..+..++.....
T Consensus 40 l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~ 119 (222)
T PRK10698 40 LVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMK 119 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888889999999999999999999999999999999999999999999999987777766555444
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 021226 172 -----VLSLIENAESTKKVSEAIQIGAQAIKKN-----KISVEELQLCLEELEESIDLQKQAEKVI 227 (315)
Q Consensus 172 -----~l~~Ie~a~~n~~v~~al~~g~~aLK~~-----~i~~e~Ve~~mddi~E~~~~~~EI~~~L 227 (315)
+-.+|..++.-..++-+=..+..+-+.. +++.+.-=.-++.+.+-++..+-=.+++
T Consensus 120 ~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~aea~ 185 (222)
T PRK10698 120 KEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESH 185 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhHh
Confidence 5567788888888888777777777762 5554433334444444444444333333
No 13
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.011 Score=50.95 Aligned_cols=177 Identities=11% Similarity=0.149 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 021226 108 LIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSE 187 (315)
Q Consensus 108 Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~Ie~a~~n~~v~~ 187 (315)
|+.+...|+.....++++-.++....+.....|+++.++.+-|+--.+-++-.+.++.-..+..+-.+-..-.++..+-.
T Consensus 20 LRkt~RdierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~ki~s~~~QnK~M~s~~km~~ 99 (208)
T KOG3231|consen 20 LRKTQRDIERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAVSSKITSMSTQNKVMNSQMKMAG 99 (208)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 44444444444444444444444445555578898888887777777777888888888888888777777888889999
Q ss_pred HHHHHHHHHHh-c-CCChHHHHHHHHHHHHHHHHHH---H-HHHHhCCCCCC-CCHHHHHHHHHHHHHHHhhcCC--CCC
Q 021226 188 AIQIGAQAIKK-N-KISVEELQLCLEELEESIDLQK---Q-AEKVIVPSYTG-IDDEDIEEEFKKLEQEVECERP--KPT 258 (315)
Q Consensus 188 al~~g~~aLK~-~-~i~~e~Ve~~mddi~E~~~~~~---E-I~~~L~~~~~~-~De~ELe~EL~~Le~E~~~e~~--~p~ 258 (315)
||-+..++|+. + .+.++++-.+|.+++-...+.+ | |++.|-.-++. -|++|-.+=.++...|...+.. ...
T Consensus 100 AMgTTaKTM~amNk~M~pek~~~tmr~FQ~anmKMemTeEMiNDTLDdild~sgDeeEs~aiVNqVLDEIGIEisgKma~ 179 (208)
T KOG3231|consen 100 AMGTTAKTMQAMNKKMDPEKTLQTMRNFQKANMKMEMTEEMINDTLDDILDGSGDEEESQAIVNQVLDEIGIEISGKMAK 179 (208)
T ss_pred HhchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHhcCCCcHHHHHHHHHHHHHHhhhhhcchhcc
Confidence 99999999998 4 8899999999999886654443 3 33333221221 2444444444444455444432 133
Q ss_pred CCCC-CCCCCC-CcccHHHHHHHhhcCc
Q 021226 259 VSKT-GVNEPA-ASESAESLRVAFSTIG 284 (315)
Q Consensus 259 ~~~~-~~~~~~-~~~~~~~l~~~L~~L~ 284 (315)
+|.. +.+..+ ..-+..++...|..|.
T Consensus 180 ~P~a~s~~~~st~kat~~Die~QLa~Lr 207 (208)
T KOG3231|consen 180 APSARSLPSASTSKATISDIERQLAALR 207 (208)
T ss_pred CCccCCCCccccCCCcHHHHHHHHHHhc
Confidence 4432 112221 1445566888777764
No 14
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=97.48 E-value=0.041 Score=49.97 Aligned_cols=147 Identities=16% Similarity=0.155 Sum_probs=99.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----
Q 021226 97 SISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEE----- 171 (315)
Q Consensus 97 ~ITe~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~----- 171 (315)
.|.+.-.++..+......+++++..+...+......|+.++..|+-+.|+.+|.+|+.++..+..+..++..+..
T Consensus 39 ~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l 118 (219)
T TIGR02977 39 TLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKL 118 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888899999999999999999999999999999999999999999999998777776665554
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHH
Q 021226 172 ------VLSLIENAESTKKVSEAIQIGAQAIKK-----NKISVEELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIE 240 (315)
Q Consensus 172 ------~l~~Ie~a~~n~~v~~al~~g~~aLK~-----~~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~~~De~ELe 240 (315)
+-.+|+.++.....+-+=..+..+-+. .+++.+.--..++.|.+-.+..+--.++.+. . +.+.|+
T Consensus 119 ~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ea~aea~~~-~---~~~~l~ 194 (219)
T TIGR02977 119 QEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDELEAQAESYDL-G---RKPSLE 194 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHhhc-c---CCCCHH
Confidence 444555666666655444444444433 1445554444444454443333322222221 1 123467
Q ss_pred HHHHHHH
Q 021226 241 EEFKKLE 247 (315)
Q Consensus 241 ~EL~~Le 247 (315)
.+|..|+
T Consensus 195 ~~l~~l~ 201 (219)
T TIGR02977 195 DEFAELE 201 (219)
T ss_pred HHHHHhc
Confidence 7776664
No 15
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=97.47 E-value=0.025 Score=51.73 Aligned_cols=148 Identities=18% Similarity=0.194 Sum_probs=108.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH------
Q 021226 100 SLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVL------ 173 (315)
Q Consensus 100 e~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l------ 173 (315)
+.-.++.++......++.++..+..+.++....|+.++..|+-..|...|-++..+++.+.....++.++.+..
T Consensus 42 ~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~ 121 (225)
T COG1842 42 KARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQ 121 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777778888888999999999999999999999999999999999999999988887776655543
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHh----c-CCChHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Q 021226 174 -----SLIENAESTKKVSEAIQIGAQAIKK----N-KISVEELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEF 243 (315)
Q Consensus 174 -----~~Ie~a~~n~~v~~al~~g~~aLK~----~-~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~~~De~ELe~EL 243 (315)
.+|......+..+.+=....++-.. . +++.+..-..++.|++-++..+.=.++.+. +.....+++++||
T Consensus 122 ~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fer~e~kiee~ea~a~~~~e-l~~~~~~dl~~e~ 200 (225)
T COG1842 122 LAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEKIEEREARAEAAAE-LAEGSGDDLDKEF 200 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhHH-hhccCcccHHHHH
Confidence 4566667777777776666666665 2 555556666666666666666555555543 1123455677787
Q ss_pred HHHHH
Q 021226 244 KKLEQ 248 (315)
Q Consensus 244 ~~Le~ 248 (315)
+++..
T Consensus 201 a~~~~ 205 (225)
T COG1842 201 AQAGA 205 (225)
T ss_pred HHhcc
Confidence 77654
No 16
>PTZ00464 SNF-7-like protein; Provisional
Probab=95.16 E-value=2 Score=39.02 Aligned_cols=92 Identities=8% Similarity=0.052 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 021226 106 LHLIWTVEKLQLQLDIIDRHYEMSRK---SALASLHSGNKTVALRHAKQL-KLTKESREKCTSLLNRVEEVLSLIENAES 181 (315)
Q Consensus 106 ~~Lk~~~~~L~~qi~~Le~~i~~~~~---~ak~~~~~~~K~~Al~~Lr~K-K~~ek~L~~~~~~l~nLe~~l~~Ie~a~~ 181 (315)
..++.++..|..++..|+.+|..+.. .|+.+++.++. .+..-.|+| +.+-+.-.....++.++...+.+++...+
T Consensus 14 ~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~-~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~ 92 (211)
T PTZ00464 14 PTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRG-MTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQF 92 (211)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999988774 57777776654 444444443 22334444456677888888888888777
Q ss_pred HHHHHHHHHHHHHHHHh
Q 021226 182 TKKVSEAIQIGAQAIKK 198 (315)
Q Consensus 182 n~~v~~al~~g~~aLK~ 198 (315)
..+-...=..-..+|+.
T Consensus 93 ~ie~a~~~~~vv~amk~ 109 (211)
T PTZ00464 93 TTESVKDTKVQVDAMKQ 109 (211)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 76655544444444443
No 17
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=90.74 E-value=0.85 Score=38.90 Aligned_cols=81 Identities=14% Similarity=0.137 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 021226 111 TVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLK-----LTKESREKCTSLLNRVEEVLSLIENAESTKKV 185 (315)
Q Consensus 111 ~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK-----~~ek~L~~~~~~l~nLe~~l~~Ie~a~~n~~v 185 (315)
++..|...+..|++++..+....+. -+..|+.++++.+ .+-+.+-+...++.++...+.+++......+.
T Consensus 2 ai~~Lk~~~~~L~~~~~~le~~i~~-----~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~ 76 (171)
T PF03357_consen 2 AILKLKKTIRRLEKQIKRLEKKIKK-----LEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIET 76 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----CHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666777776666665442 2445555554432 23333344444445555555555554444444
Q ss_pred HHHHHHHHHHH
Q 021226 186 SEAIQIGAQAI 196 (315)
Q Consensus 186 ~~al~~g~~aL 196 (315)
......-..+|
T Consensus 77 a~~~~~v~~al 87 (171)
T PF03357_consen 77 AQSNQQVVKAL 87 (171)
T ss_dssp HHHHHHHSSS-
T ss_pred HHHHHHHHHHH
Confidence 44333333333
No 18
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=89.33 E-value=16 Score=32.74 Aligned_cols=74 Identities=9% Similarity=0.034 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HHHHHHHH---HhHHHHHHHHHHHHHHHHH
Q 021226 107 HLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKL--TKESREKC---TSLLNRVEEVLSLIENAES 181 (315)
Q Consensus 107 ~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~--~ek~L~~~---~~~l~nLe~~l~~Ie~a~~ 181 (315)
..+.++.+|..+++.|+++...+...+.. ....|+.++++.+. +-..|.+. ..++.++...+..+++...
T Consensus 24 ~~~~AIl~Lk~~~~~L~krq~~Le~kIe~-----e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~ 98 (191)
T PTZ00446 24 EIYKAILKNREAIDALEKKQVQVEKKIKQ-----LEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMI 98 (191)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999888876542 23457777766553 33334333 4455555555555555554
Q ss_pred HHHH
Q 021226 182 TKKV 185 (315)
Q Consensus 182 n~~v 185 (315)
+.+-
T Consensus 99 ~iE~ 102 (191)
T PTZ00446 99 NLEN 102 (191)
T ss_pred HHHH
Confidence 4443
No 19
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=88.50 E-value=2.2 Score=30.91 Aligned_cols=44 Identities=18% Similarity=0.300 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 021226 120 DIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCT 163 (315)
Q Consensus 120 ~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~ 163 (315)
+.|+.+...++..|.++-++|+-..|+.|+|.=|.++..+....
T Consensus 2 ~~L~~R~~~yk~Aa~~AK~~gd~~kAr~~~R~~K~~~~~I~~~~ 45 (59)
T smart00685 2 ALLQQRQEQYKQAALQAKRAGDEEKARRHLRIAKQFDDAIKAAR 45 (59)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhHHHHHHHHH
Confidence 56888888999888888899999999999999999998887653
No 20
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.28 E-value=20 Score=32.17 Aligned_cols=92 Identities=13% Similarity=0.076 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 021226 107 HLIWTVEKLQLQLDIIDRHYEMSRKSALASL---HSGNKTVALRHAKQLKLT-KESREKCTSLLNRVEEVLSLIENAEST 182 (315)
Q Consensus 107 ~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~---~~~~K~~Al~~Lr~KK~~-ek~L~~~~~~l~nLe~~l~~Ie~a~~n 182 (315)
.|..++..+.++-+.++.+|.++......|- ++-+-.-|+..||+|-+- -++-.-..++..+|.+.-...++|...
T Consensus 16 sL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t 95 (218)
T KOG1655|consen 16 SLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFT 95 (218)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 8899999999999999999999997554443 333333489999988763 344444566788888888888888877
Q ss_pred HHHHHHHHHHHHHHHh
Q 021226 183 KKVSEAIQIGAQAIKK 198 (315)
Q Consensus 183 ~~v~~al~~g~~aLK~ 198 (315)
.+-++--.+...|||.
T Consensus 96 ~e~LKdtq~Tv~AmK~ 111 (218)
T KOG1655|consen 96 AESLKDTQATVAAMKD 111 (218)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777666666677775
No 21
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.86 E-value=23 Score=31.81 Aligned_cols=170 Identities=16% Similarity=0.192 Sum_probs=105.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 021226 101 LDYDVLHLIWTVEKLQLQLDIIDRHYEM---------SRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEE 171 (315)
Q Consensus 101 ~D~~I~~Lk~~~~~L~~qi~~Le~~i~~---------~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~ 171 (315)
.++++-.|...+..|+.|-+.|=.+|.+ .+-.||.+++- ++|. +-+.....++.+--..+++
T Consensus 21 l~~a~ReleRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRt------R~~i---~kf~~~kaqiqaVSl~iQt 91 (224)
T KOG3230|consen 21 LNKATRELERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRT------RRYI---KKFQNMKAQIQAVSLRIQT 91 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH------HHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666655555533 23345555442 3333 2334555666777788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--c-CC--ChHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Q 021226 172 VLSLIENAESTKKVSEAIQIGAQAIKK--N-KI--SVEELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKL 246 (315)
Q Consensus 172 ~l~~Ie~a~~n~~v~~al~~g~~aLK~--~-~i--~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~~~De~ELe~EL~~L 246 (315)
+.+.-..++.=+-+-.||..=|+-|.- + .| ..++--++||--.|.|. +-|+++|+. +.||+|-++=-.+-
T Consensus 92 lkss~sma~aMkGaTkam~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~--daIDdal~~---~edEEEtd~lvnqV 166 (224)
T KOG3230|consen 92 LKSSTSMAQAMKGATKAMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMD--DAIDDALGD---DEDEEETDDLVNQV 166 (224)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhcc---cchhHHHHHHHHHH
Confidence 999999999999999999999998875 2 33 78888999999988886 458999964 34555544444555
Q ss_pred HHHHhhcC-----CCCC----CCCC---CCC-----CCCC-cccHHHHHHHhhcCc
Q 021226 247 EQEVECER-----PKPT----VSKT---GVN-----EPAA-SESAESLRVAFSTIG 284 (315)
Q Consensus 247 e~E~~~e~-----~~p~----~~~~---~~~-----~~~~-~~~~~~l~~~L~~L~ 284 (315)
..|....- ..|+ +|.. ... ...+ ...+++|.++|.+|.
T Consensus 167 LDEiGvdl~~qL~~~P~~~~~~~~a~~ig~~~a~~~gs~~~~~~dddLqaRL~~Lr 222 (224)
T KOG3230|consen 167 LDEIGVDLASQLSSLPSAAGSLPIAKTIGGKKAEAAGSEFHSDADDDLQARLDNLR 222 (224)
T ss_pred HHHHcccHHHHhccCcccccccchhhccCCccccccccccCCCchhHHHHHHHHHh
Confidence 44443221 1243 1111 111 1112 455788999998875
No 22
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=85.45 E-value=28 Score=31.47 Aligned_cols=40 Identities=13% Similarity=0.237 Sum_probs=20.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021226 158 SREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIK 197 (315)
Q Consensus 158 ~L~~~~~~l~nLe~~l~~Ie~a~~n~~v~~al~~g~~aLK 197 (315)
...++......|+++-..+........|..-|..++..+.
T Consensus 50 ~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mn 89 (204)
T COG5491 50 ARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMN 89 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3444445555555555555555555555555555555555
No 23
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.57 E-value=51 Score=33.01 Aligned_cols=83 Identities=17% Similarity=0.082 Sum_probs=53.2
Q ss_pred CCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH--HHHHHHHHHHH---HhHHHHH
Q 021226 96 SSISSLDYD-VLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQ--LKLTKESREKC---TSLLNRV 169 (315)
Q Consensus 96 ~~ITe~D~~-I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~--KK~~ek~L~~~---~~~l~nL 169 (315)
..|+..|.+ |-.+-..+..|.+-+..|.++|+.+.+.+. ..++.|+.++|. |+++-..|-++ ...+...
T Consensus 218 ~~i~~~~~~~it~~D~~V~~L~~~~~~L~kqie~L~qeie-----~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~ 292 (439)
T KOG2911|consen 218 SQIPSQDASIITEIDGSVADLIQARAKLAKQIEFLEQEIE-----KSKEKLRQALKEGKKQIAITYLRARKLLEKDLERK 292 (439)
T ss_pred ccCCcccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHH
Confidence 345554544 778899999999999999999999999876 345666677764 34444444333 3344444
Q ss_pred HHHHHHHHHHHHHH
Q 021226 170 EEVLSLIENAESTK 183 (315)
Q Consensus 170 e~~l~~Ie~a~~n~ 183 (315)
...+.+++.--++.
T Consensus 293 ~~~l~~l~~vl~~I 306 (439)
T KOG2911|consen 293 VSSLNNLETVLSQI 306 (439)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555444443
No 24
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=80.47 E-value=18 Score=26.81 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 021226 107 HLIWTVEKLQLQLDIIDRHYEMSRK-SALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVE 170 (315)
Q Consensus 107 ~Lk~~~~~L~~qi~~Le~~i~~~~~-~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe 170 (315)
.|+..++.|..+.+.|..-.+.++. .+.-.+.-|+.+.+...||.++.+.....+.++++..|.
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~alrlal~ys~r~~e~~~~llal~ 66 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATALRLALKYSERCKEAYEVLLALV 66 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3677788888888888888877775 444556788899999999999999999999888887653
No 25
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=75.67 E-value=15 Score=33.89 Aligned_cols=93 Identities=12% Similarity=0.170 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 021226 101 LDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAE 180 (315)
Q Consensus 101 ~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~Ie~a~ 180 (315)
-..++-=|+.+++.|..|++.++.+++.+...-+ .++... .--.+.-.++..+++..-.+.+|+.++.
T Consensus 120 k~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~k----Kkk~~~--~~~~r~~~l~~~ierhk~Hi~kLE~lLR------ 187 (233)
T PF04065_consen 120 KEEARDWLKDSIDELNRQIEQLEAEIESLSSQKK----KKKKDS--TKQERIEELESRIERHKFHIEKLELLLR------ 187 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cCccCc--cchhHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 4556667888899999999999998888775322 110000 0111222334444444444444444443
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 021226 181 STKKVSEAIQIGAQAIKKNKISVEELQLCLEELEESIDL 219 (315)
Q Consensus 181 ~n~~v~~al~~g~~aLK~~~i~~e~Ve~~mddi~E~~~~ 219 (315)
.|..-.|+++.|+++-++|.--++.
T Consensus 188 --------------~L~N~~l~~e~V~~ikedieyYve~ 212 (233)
T PF04065_consen 188 --------------LLDNDELDPEQVEDIKEDIEYYVES 212 (233)
T ss_pred --------------HHHcCCCCHHHHHHHHHHHHHHHHc
Confidence 3333477889999888888776664
No 26
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.05 E-value=77 Score=28.73 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=31.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhc
Q 021226 99 SSLDYDVLHLIWTVEKLQLQLDIIDRH--YEMSRKSALASLHS 139 (315)
Q Consensus 99 Te~D~~I~~Lk~~~~~L~~qi~~Le~~--i~~~~~~ak~~~~~ 139 (315)
-..|+.|.+|+....+.++.|+..-++ +..|.-.||+.++.
T Consensus 28 r~ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~s 70 (227)
T KOG3229|consen 28 RQLDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQS 70 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 348999999999999999999877765 45666666665554
No 27
>PRK14127 cell division protein GpsB; Provisional
Probab=71.37 E-value=25 Score=28.58 Aligned_cols=77 Identities=10% Similarity=0.236 Sum_probs=39.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCcccHHHHHHH
Q 021226 200 KISVEELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEQEVECERPKPTVSKTGVNEPAASESAESLRVA 279 (315)
Q Consensus 200 ~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~~~De~ELe~EL~~Le~E~~~e~~~p~~~~~~~~~~~~~~~~~~l~~~ 279 (315)
|.+.+.||..+|++.+..+....-...|.. .-..|+++|+++......-.. .+......+...-+.=+++.+
T Consensus 22 GYd~~EVD~FLd~V~~dye~l~~e~~~Lk~-----e~~~l~~~l~e~~~~~~~~~~---~~~~~~~~~~~~~tn~DiLKR 93 (109)
T PRK14127 22 GYDQDEVDKFLDDVIKDYEAFQKEIEELQQ-----ENARLKAQVDELTKQVSVGAS---SSSVATTQPSSSATNYDILKR 93 (109)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhccccc---cccccccCCCCCcchHHHHHH
Confidence 889999999999998776655433333321 122445555555443331111 100000000112355677888
Q ss_pred hhcCc
Q 021226 280 FSTIG 284 (315)
Q Consensus 280 L~~L~ 284 (315)
|++|.
T Consensus 94 ls~LE 98 (109)
T PRK14127 94 LSNLE 98 (109)
T ss_pred HHHHH
Confidence 88874
No 28
>PRK04863 mukB cell division protein MukB; Provisional
Probab=71.10 E-value=2.2e+02 Score=33.45 Aligned_cols=17 Identities=6% Similarity=0.329 Sum_probs=11.7
Q ss_pred CCCCHHHHHHHHHHHHH
Q 021226 232 TGIDDEDIEEEFKKLEQ 248 (315)
Q Consensus 232 ~~~De~ELe~EL~~Le~ 248 (315)
.+.++++|+..++....
T Consensus 433 ~~~SdEeLe~~LenF~a 449 (1486)
T PRK04863 433 PDLTADNAEDWLEEFQA 449 (1486)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 46677778877776654
No 29
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=70.34 E-value=1.3e+02 Score=34.06 Aligned_cols=134 Identities=13% Similarity=0.165 Sum_probs=76.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-H
Q 021226 97 SISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLS-L 175 (315)
Q Consensus 97 ~ITe~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~-~ 175 (315)
.+|-.+.+...-+.+-..|.......++-+...++ |+. -...-++.|.+.|-+-+..-.+.++...-+.||-+.+. -
T Consensus 1406 a~t~A~~A~~~A~~~~~~l~~~~ae~eq~~~~v~e-a~~-~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~F 1483 (1758)
T KOG0994|consen 1406 AVTRAGGALLMAGDADTQLRSKLAEAEQTLSMVRE-AKL-SASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDF 1483 (1758)
T ss_pred hhcccchHHHHhhhHHHHHHHHHHHHHHHHHHHHH-HHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555544444433332 110 01223555666655554444444444444444433222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 021226 176 IENAESTKKVSEAIQIGAQAIKK-NKISVEELQLCLEELEESIDLQKQAEKVIVPSYTGI 234 (315)
Q Consensus 176 Ie~a~~n~~v~~al~~g~~aLK~-~~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~~~ 234 (315)
+.+-..+..-++. .+.++|.. +.++.+.|..++++|+|..+...-|+.+|..+..++
T Consensus 1484 lt~~~adp~si~~--vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di 1541 (1758)
T KOG0994|consen 1484 LTQPDADPDSIEE--VAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDI 1541 (1758)
T ss_pred hcCCCCCHHHHHH--HHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhH
Confidence 2333344444443 46677876 588999999999999999999999999997754444
No 30
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=70.21 E-value=1.1e+02 Score=31.85 Aligned_cols=147 Identities=16% Similarity=0.175 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 021226 104 DVLHLIWTVEKLQLQLDIIDRHYEMSR------KSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIE 177 (315)
Q Consensus 104 ~I~~Lk~~~~~L~~qi~~Le~~i~~~~------~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~Ie 177 (315)
.+-.+...++..+.++..+...++.+. ..+-..++..-+..-+.+|-.+..+-..+..+..+|.+++....+.+
T Consensus 106 ~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~ 185 (569)
T PRK04778 106 EINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFV 185 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443322 12233445555666777788888888888888899999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHH-HHHHHHHHHh----CCCCCCCCHHHHHHHHHHHHHH
Q 021226 178 NAESTKKVSEAIQIGAQAIKKN---KISVEELQLCLEELEESI-DLQKQAEKVI----VPSYTGIDDEDIEEEFKKLEQE 249 (315)
Q Consensus 178 ~a~~n~~v~~al~~g~~aLK~~---~i~~e~Ve~~mddi~E~~-~~~~EI~~~L----~~~~~~~De~ELe~EL~~Le~E 249 (315)
....+.+.+.|-..-.++=... +--+++|=.+..+++... +.-+|+.+-. ..++ .++..+++.++..|...
T Consensus 186 ~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy-~~~~~~i~~~i~~l~~~ 264 (569)
T PRK04778 186 ELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGY-HLDHLDIEKEIQDLKEQ 264 (569)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC-CCCCCChHHHHHHHHHH
Confidence 8887777666544433322221 113334433344444433 3444444333 2222 34445566666666554
Q ss_pred Hh
Q 021226 250 VE 251 (315)
Q Consensus 250 ~~ 251 (315)
..
T Consensus 265 i~ 266 (569)
T PRK04778 265 ID 266 (569)
T ss_pred HH
Confidence 43
No 31
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=67.86 E-value=13 Score=35.12 Aligned_cols=50 Identities=8% Similarity=0.001 Sum_probs=44.6
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021226 91 SPAAVSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSG 140 (315)
Q Consensus 91 ~~~~~~~ITe~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~ 140 (315)
++++-..|...+.++..-|.++..|++|+..|+.++....+.+..|...+
T Consensus 133 ~~~F~~rf~~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kkid~yWgkd 182 (308)
T PF06717_consen 133 DQDFNYRFNQIEDEYNRKKNKIPGLNKQISALDKQIVAINKKIDRYWGKD 182 (308)
T ss_pred chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 45666788899999999999999999999999999999999999998654
No 32
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=62.43 E-value=1.1e+02 Score=27.03 Aligned_cols=78 Identities=17% Similarity=0.127 Sum_probs=39.6
Q ss_pred cccccHhhHHHhhCC-----CchhHHHHHHhhhcCccceeeeec-CCceeeEEeeCCCCCCCCCChhHHHHHHHHHHHHH
Q 021226 41 SCIITMKKFQDKCGG-----QDEASAVLSFLTGRGKALYLSISK-NEFTEGVKVSLSPAAVSSISSLDYDVLHLIWTVEK 114 (315)
Q Consensus 41 ~~v~s~~~F~~~~~~-----~~d~~ilL~yL~~~~~~~~v~v~~-~~~~~~IKf~~~~~~~~~ITe~D~~I~~Lk~~~~~ 114 (315)
..+|++.++-+++.- +--+.-+|.-|..++.. .+-+ |++--+=.|. + .+...++.....
T Consensus 9 ~~~y~lKELEK~~pK~~gI~~~~VKdvlq~LvDDglV---~~EKiGssn~YWsFp------s------~~~~~~~~~~~~ 73 (188)
T PF03962_consen 9 KDFYTLKELEKLAPKEKGIVSMSVKDVLQSLVDDGLV---HVEKIGSSNYYWSFP------S------QAKQKRQNKLEK 73 (188)
T ss_pred CCcccHHHHHHHcccccCCchhhHHHHHHHHhccccc---hhhhccCeeEEEecC------h------HHHHHHHHHHHH
Confidence 457999998877542 22333366666543322 2111 2211122222 1 133456666666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021226 115 LQLQLDIIDRHYEMSRKSA 133 (315)
Q Consensus 115 L~~qi~~Le~~i~~~~~~a 133 (315)
|++++..+..++..+....
T Consensus 74 l~~~~~~~~~~i~~l~~~i 92 (188)
T PF03962_consen 74 LQKEIEELEKKIEELEEKI 92 (188)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666665533
No 33
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=60.28 E-value=2.2e+02 Score=29.60 Aligned_cols=88 Identities=11% Similarity=0.070 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 021226 101 LDYDVLHLIWTVEKLQLQLDIIDRHYEMSRK------SALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLS 174 (315)
Q Consensus 101 ~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~------~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~ 174 (315)
....+-.+...+..++.++..+...++.+.. .+-..++..-+..-+.+|..+..+-..+..+...|.+++....
T Consensus 99 a~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~ 178 (560)
T PF06160_consen 99 AKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFS 178 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555544433321 2223445555666677888888888888888999999999888
Q ss_pred HHHHHHHHHHHHHH
Q 021226 175 LIENAESTKKVSEA 188 (315)
Q Consensus 175 ~Ie~a~~n~~v~~a 188 (315)
..+....+.+-++|
T Consensus 179 ~f~~lt~~GD~~~A 192 (560)
T PF06160_consen 179 EFEELTENGDYLEA 192 (560)
T ss_pred HHHHHHHCCCHHHH
Confidence 88888877554444
No 34
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=58.44 E-value=61 Score=27.18 Aligned_cols=64 Identities=13% Similarity=0.106 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 021226 114 KLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIE 177 (315)
Q Consensus 114 ~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~Ie 177 (315)
.|..++..++.++..+.-.++..+....++.+-..=.-+..+++...++..+..+|..-+.+++
T Consensus 24 ~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~ 87 (131)
T PF11068_consen 24 ELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQVQ 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555544444444433332223333344555556666666555555554443
No 35
>PRK11637 AmiB activator; Provisional
Probab=58.14 E-value=2e+02 Score=28.53 Aligned_cols=16 Identities=0% Similarity=0.117 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 021226 182 TKKVSEAIQIGAQAIK 197 (315)
Q Consensus 182 n~~v~~al~~g~~aLK 197 (315)
+..+++.|...-..|.
T Consensus 168 d~~~l~~l~~~~~~L~ 183 (428)
T PRK11637 168 RQETIAELKQTREELA 183 (428)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555554444444
No 36
>PRK14162 heat shock protein GrpE; Provisional
Probab=58.14 E-value=90 Score=27.97 Aligned_cols=71 Identities=13% Similarity=0.100 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHH
Q 021226 101 LDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAK-QLKLTKESREKCTSLLNRVEEVLSL 175 (315)
Q Consensus 101 ~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr-~KK~~ek~L~~~~~~l~nLe~~l~~ 175 (315)
.+..+-.|+..+..|+.++..+..++-.+..... +=+|..++..-. ++-..++.+..+...++||+-.+..
T Consensus 37 ~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfe----N~rkR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~ 108 (194)
T PRK14162 37 KQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQ----NMQNRYAKERAQLIKYESQSLAKDVLPAMDNLERALAV 108 (194)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhc
Confidence 4445555666666666666666555544333222 112222222222 2233455566666666666666544
No 37
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=57.44 E-value=76 Score=23.45 Aligned_cols=44 Identities=14% Similarity=0.074 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Q 021226 119 LDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKC 162 (315)
Q Consensus 119 i~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~ 162 (315)
...++.++..+......++..++-..|...+++-+.+.+.++.+
T Consensus 33 ~~~~~~~~~~~~~~l~~~f~~~d~~~A~~~~~kLky~~kl~~~i 76 (78)
T PF07743_consen 33 KKEIEERIKELIKELAEAFDAKDWEEAKEALRKLKYLQKLLEEI 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666667777777889999999999999999998887754
No 38
>PRK11020 hypothetical protein; Provisional
Probab=54.84 E-value=1.1e+02 Score=25.08 Aligned_cols=84 Identities=8% Similarity=0.097 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021226 115 LQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLN-RVEEVLSLIENAESTKKVSEAIQIGA 193 (315)
Q Consensus 115 L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~-nLe~~l~~Ie~a~~n~~v~~al~~g~ 193 (315)
+...|+.|..+++.|+.+--.+...|+...-..+.+.+--+++.++++-.... .|..--..+-.--.+..+-.+=++--
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l~~lpF~R~iTK~EQADM 82 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKLMKLPFSRAITKKEQADM 82 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhccHHHHHhH
Confidence 45567777777777776555667889999999998888888888887765432 23333333433334444444444444
Q ss_pred HHHHh
Q 021226 194 QAIKK 198 (315)
Q Consensus 194 ~aLK~ 198 (315)
..||+
T Consensus 83 GkLKK 87 (118)
T PRK11020 83 GKLKK 87 (118)
T ss_pred HHHhh
Confidence 44444
No 39
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=53.88 E-value=61 Score=24.65 Aligned_cols=62 Identities=11% Similarity=0.220 Sum_probs=39.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 021226 155 TKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVIVP 229 (315)
Q Consensus 155 ~ek~L~~~~~~l~nLe~~l~~Ie~a~~n~~v~~al~~g~~aLK~~~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~ 229 (315)
+++.|+.+..--.-++.+...|+.|..|...|.. .++.-+.+||.--.-+.+++-..++|..
T Consensus 3 L~kEL~~Lr~IN~~ie~~~~~L~~a~~~~~~v~~-------------~~~~t~~LLd~w~~IlSQte~~~~Ll~d 64 (78)
T PF08651_consen 3 LEKELEQLRKINPVIEGLIETLRSAKSNMNRVQE-------------TVESTNTLLDKWIRILSQTEHTQRLLLD 64 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566666666666666666777777666655542 3444555666666667777777777743
No 40
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.58 E-value=2e+02 Score=27.11 Aligned_cols=62 Identities=16% Similarity=0.164 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHhc-----------CCChHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH
Q 021226 181 STKKVSEAIQIGAQAIKKN-----------KISVEELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLE 247 (315)
Q Consensus 181 ~n~~v~~al~~g~~aLK~~-----------~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~~~De~ELe~EL~~Le 247 (315)
.|+.+++..+.--..|+.. .-..-+.+..+++|..+....+-+-..+.. ++.....|...|+
T Consensus 145 aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa-----~~a~~~~e~a~l~ 217 (265)
T COG3883 145 ADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAA-----KEASALGEKAALE 217 (265)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhHHHHHHHH
Confidence 4566666666666666542 112333455555555555544444443333 5555666666655
No 41
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=52.01 E-value=2.8e+02 Score=28.42 Aligned_cols=50 Identities=28% Similarity=0.314 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCChHHHHHHHHHHHHH
Q 021226 164 SLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKK----NKISVEELQLCLEELEES 216 (315)
Q Consensus 164 ~~l~nLe~~l~~Ie~a~~n~~v~~al~~g~~aLK~----~~i~~e~Ve~~mddi~E~ 216 (315)
.+..-++.+...|+.-.... ++|+.--+-|+. .+|++++++.+..+-.+.
T Consensus 327 ~~~g~l~kl~~eie~kEeei---~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L 380 (622)
T COG5185 327 EWPGKLEKLKSEIELKEEEI---KALQSNIDELHKQLRKQGISTEQFELMNQEREKL 380 (622)
T ss_pred hcchHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 34445555556666555544 345555555554 399999998876654433
No 42
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=50.28 E-value=1.5e+02 Score=24.57 Aligned_cols=38 Identities=11% Similarity=0.143 Sum_probs=26.2
Q ss_pred CHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 021226 141 NKTVALRHAK-QLKLTKESREKCTSLLNRVEEVLSLIEN 178 (315)
Q Consensus 141 ~K~~Al~~Lr-~KK~~ek~L~~~~~~l~nLe~~l~~Ie~ 178 (315)
....|+.+|. +.+.+++.++++...+..+...+..|..
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~ 129 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQ 129 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677887776 5567777777777777776666665544
No 43
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=49.46 E-value=23 Score=22.43 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021226 204 EELQLCLEELEESIDLQKQ 222 (315)
Q Consensus 204 e~Ve~~mddi~E~~~~~~E 222 (315)
+.+|+++|+|.+.++..-|
T Consensus 3 ~~~D~lLDeId~vLe~NAe 21 (33)
T TIGR03687 3 EGVDDLLDEIDGVLESNAE 21 (33)
T ss_pred chHHHHHHHHHHHHHHhHH
Confidence 5788999999888876543
No 44
>PRK14143 heat shock protein GrpE; Provisional
Probab=48.44 E-value=2e+02 Score=26.61 Aligned_cols=72 Identities=11% Similarity=0.093 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021226 101 LDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSL 175 (315)
Q Consensus 101 ~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~ 175 (315)
.+..+-.|+..+..|++++..+..++-++.....-|-+.-.|+. ---++...++.+..+...++||+-.+..
T Consensus 65 ~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~---e~~~~~a~~~~~~~lLpV~DnLerAl~~ 136 (238)
T PRK14143 65 NAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQ---EDLRLQLKCNTLSEILPVVDNFERARQQ 136 (238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHhc
Confidence 44456677777777777776666555443332222211111111 1123344556666666666666665543
No 45
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=46.61 E-value=94 Score=22.15 Aligned_cols=38 Identities=11% Similarity=0.171 Sum_probs=25.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021226 98 ISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALA 135 (315)
Q Consensus 98 ITe~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~ 135 (315)
|++..-.+=.+...+..++++++.|...++.+.+..+.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566667777777777777777777777665543
No 46
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=46.51 E-value=1.4e+02 Score=23.38 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021226 104 DVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSG 140 (315)
Q Consensus 104 ~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~ 140 (315)
.|+.|-.....+..+++.|..+-..+.+......+.|
T Consensus 30 ~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~ 66 (108)
T PF02403_consen 30 EIIELDQERRELQQELEELRAERNELSKEIGKLKKAG 66 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc
Confidence 5667777777777777777777777776666666665
No 47
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=46.45 E-value=1.1e+02 Score=30.74 Aligned_cols=71 Identities=18% Similarity=0.120 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 021226 106 LHLIWTVEKLQLQLDIIDRHYEMSRKSALASL--------HSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLI 176 (315)
Q Consensus 106 ~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~--------~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~I 176 (315)
..++..+..|..++..+..++++++......- ....+.....+.+.++.+...+.++...+..|+..+...
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444445555555555555544444322211 122345556666666677777777776666666555443
No 48
>PRK14160 heat shock protein GrpE; Provisional
Probab=46.23 E-value=2.3e+02 Score=25.73 Aligned_cols=30 Identities=13% Similarity=0.128 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021226 102 DYDVLHLIWTVEKLQLQLDIIDRHYEMSRK 131 (315)
Q Consensus 102 D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~ 131 (315)
+..+..++..+..|..++..|+.++..++.
T Consensus 53 ~~~~~~l~~e~~~l~~~l~~l~~e~~elkd 82 (211)
T PRK14160 53 EVKIEELKDENNKLKEENKKLENELEALKD 82 (211)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777777777666654
No 49
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=45.50 E-value=1.8e+02 Score=27.40 Aligned_cols=69 Identities=16% Similarity=0.161 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 021226 102 DYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVE 170 (315)
Q Consensus 102 D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe 170 (315)
..+...|.+....|+..|+.|+++-+++++..+..+....-..|.+.--=|..+--.|..+...-.+|+
T Consensus 3 ~~~L~eL~qrk~~Lq~eIe~LerR~~ri~~EmrtsFaG~Sq~lA~RVqGFkdYLvGsLQDLa~saEqLe 71 (283)
T PF11285_consen 3 QEALKELEQRKQALQIEIEQLERRRERIEKEMRTSFAGQSQDLAIRVQGFKDYLVGSLQDLAQSAEQLE 71 (283)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHhhhHHHHHHHHHHHHHHHHhhc
Confidence 456778999999999999999999999999999888888888888776666666666666555555544
No 50
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.14 E-value=2.2e+02 Score=25.08 Aligned_cols=23 Identities=9% Similarity=0.224 Sum_probs=16.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHH
Q 021226 200 KISVEELQLCLEELEESIDLQKQ 222 (315)
Q Consensus 200 ~i~~e~Ve~~mddi~E~~~~~~E 222 (315)
+++-|-+.+++|+|-+.-.+.+|
T Consensus 135 emTeEMiNDTLDdild~sgDeeE 157 (208)
T KOG3231|consen 135 EMTEEMINDTLDDILDGSGDEEE 157 (208)
T ss_pred hhHHHHHHhhHHHHhcCCCcHHH
Confidence 77888888888888655444444
No 51
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=45.13 E-value=55 Score=31.17 Aligned_cols=33 Identities=15% Similarity=0.088 Sum_probs=29.3
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 021226 138 HSGNKTVALRHAKQLKLTKESREKCTSLLNRVE 170 (315)
Q Consensus 138 ~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe 170 (315)
--++|+.|+.|=|+||-|-|=|+++...|.|=.
T Consensus 296 LmKNREAARECRRKKKEYVKCLENRVAVLENQN 328 (348)
T KOG3584|consen 296 LMKNREAARECRRKKKEYVKCLENRVAVLENQN 328 (348)
T ss_pred HHhhHHHHHHHHHhHhHHHHHHHhHHHHHhccc
Confidence 456899999999999999999999999988743
No 52
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=44.51 E-value=3.5e+02 Score=27.94 Aligned_cols=17 Identities=0% Similarity=0.233 Sum_probs=10.1
Q ss_pred HHHHHHhhcCccCCCCC
Q 021226 274 ESLRVAFSTIGLNDGQA 290 (315)
Q Consensus 274 ~~l~~~L~~L~l~d~~~ 290 (315)
..+...|..|.+++..+
T Consensus 382 ~~v~~~l~~L~m~~~~f 398 (563)
T TIGR00634 382 KRVEQELKALAMEKAEF 398 (563)
T ss_pred HHHHHHHHhCCCCCcEE
Confidence 34456677777766443
No 53
>COG5570 Uncharacterized small protein [Function unknown]
Probab=44.27 E-value=81 Score=22.27 Aligned_cols=44 Identities=16% Similarity=0.239 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 021226 108 LIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKE 157 (315)
Q Consensus 108 Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek 157 (315)
|...+..|+++-..|+++|..... .-+--+.+..-||+||+.-|
T Consensus 3 ieshl~eL~kkHg~le~ei~ea~n------~Ps~dd~~i~eLKRrKL~lK 46 (57)
T COG5570 3 IESHLAELEKKHGNLEREIQEAMN------SPSSDDLAIRELKRRKLRLK 46 (57)
T ss_pred HHHHHHHHHHhhchHHHHHHHHhc------CCCcchHHHHHHHHHHHHHH
Confidence 455667788888888888876543 44567788999999887644
No 54
>PRK14159 heat shock protein GrpE; Provisional
Probab=43.62 E-value=2.1e+02 Score=25.22 Aligned_cols=65 Identities=12% Similarity=0.093 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 021226 102 DYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLI 176 (315)
Q Consensus 102 D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~I 176 (315)
|..|-.++..+..+..+.-.+...++-++..+.. .+.. -++-..++.+..+...++||+-.+...
T Consensus 29 ~~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~r-----E~e~-----~~~~a~~~~~~~LLpV~DnlerAl~~~ 93 (176)
T PRK14159 29 DVEQNKLQKDYDELKDKYMRANAEFENIKKRMEK-----EKLS-----AMAYANESFAKDLLDVLDALEAAVNVE 93 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH-----HHHHHHHHHHHHHhhHHhHHHHHHhcc
Confidence 4455555655555555544444444444432210 1111 123345666667777777777766543
No 55
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=43.43 E-value=2.4e+02 Score=25.11 Aligned_cols=111 Identities=10% Similarity=0.108 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 021226 107 HLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVAL-RHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKV 185 (315)
Q Consensus 107 ~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al-~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~Ie~a~~n~~v 185 (315)
.|+..++.+.+.+..+...|+.....-+.....|++..-. .+|-.||.-...+.+-.+.++.. +...
T Consensus 86 ~l~~~~~~~kqdi~t~~e~i~~ek~~r~k~~Te~~~n~~~~~Ll~~~k~eqd~~k~~l~~l~~~------------~pi~ 153 (209)
T COG5124 86 LLKKKIQEVKQDIATYKEEIDKEKATRRKKFTEGQKNYNREALLEKRKKEQDEIKKKLNSLQKI------------EPIR 153 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHhcccccc------------Cchh
Confidence 4444445555555555555544443333344455544322 23333344444444444444333 3344
Q ss_pred HHHHHHHHHHHHhc-CCChHHHHHHHH-HHHHHHHHHHHHHHHhCC
Q 021226 186 SEAIQIGAQAIKKN-KISVEELQLCLE-ELEESIDLQKQAEKVIVP 229 (315)
Q Consensus 186 ~~al~~g~~aLK~~-~i~~e~Ve~~md-di~E~~~~~~EI~~~L~~ 229 (315)
+++...-.+-++.. ....|+|+-+.| =...--...++|..-.|-
T Consensus 154 ~d~~~~~~kk~~~~~n~~tDnI~ilidy~c~kf~~~~~qir~~fgI 199 (209)
T COG5124 154 WDAAKIQEKKKKVHLNKTTDNIEILIDYLCKKFFLKPEQIRKEFGI 199 (209)
T ss_pred HHHHhhhHHHHHHHHHhhhhhHHHHHHHHHHHcCCCHHHHHHhcCC
Confidence 44444444434432 556677777766 333334456666665544
No 56
>PRK14146 heat shock protein GrpE; Provisional
Probab=43.38 E-value=1.9e+02 Score=26.33 Aligned_cols=67 Identities=9% Similarity=0.083 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHH
Q 021226 105 VLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAK-QLKLTKESREKCTSLLNRVEEVLSL 175 (315)
Q Consensus 105 I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr-~KK~~ek~L~~~~~~l~nLe~~l~~ 175 (315)
+..|+..+..|..++..|..++-.+.... .+=+|..++..-+ ++-..++.+..+...++||+-.+..
T Consensus 56 ~~~l~~~l~~l~~e~~el~d~~lR~~Adf----eN~rkR~~kE~e~~~~~a~e~~~~~lLpv~DnlerAl~~ 123 (215)
T PRK14146 56 ETSLQKELDNAKKEIESLKDSWARERAEF----QNFKRRSAQEFVSIRKEAVKSLVSGFLNPIDNLERVGAT 123 (215)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhc
Confidence 44555555555555555544443322221 2222222222222 2334455666666677777665543
No 57
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=40.90 E-value=2.1e+02 Score=24.52 Aligned_cols=49 Identities=10% Similarity=0.225 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 021226 120 DIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNR 168 (315)
Q Consensus 120 ~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~n 168 (315)
..++.++..+......++..++-..|..++++-+.+.+..+.+..+...
T Consensus 107 ~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kLky~~kl~~~i~~~~~~ 155 (157)
T TIGR00714 107 KRVKKMFQTRHQLLVEQLDNQTWAAAADYTRKLRFLDKLRSSAEQLEEK 155 (157)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555556666666667888899999999999999999888877665543
No 58
>PRK10869 recombination and repair protein; Provisional
Probab=38.68 E-value=4.7e+02 Score=27.11 Aligned_cols=15 Identities=7% Similarity=0.330 Sum_probs=10.2
Q ss_pred HHHHHHhhcCccCCC
Q 021226 274 ESLRVAFSTIGLNDG 288 (315)
Q Consensus 274 ~~l~~~L~~L~l~d~ 288 (315)
..+...|..|.++..
T Consensus 377 ~~v~~~L~~L~m~~a 391 (553)
T PRK10869 377 QLITESMHELSMPHG 391 (553)
T ss_pred HHHHHHHHHcCCCCc
Confidence 445667777888765
No 59
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=38.60 E-value=95 Score=21.30 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021226 105 VLHLIWTVEKLQLQLDIIDRHYEMSRK 131 (315)
Q Consensus 105 I~~Lk~~~~~L~~qi~~Le~~i~~~~~ 131 (315)
|..|+++...|+.|+..|+...+.+++
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKK 27 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKK 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888999999999999988888775
No 60
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=35.85 E-value=7.4e+02 Score=28.61 Aligned_cols=77 Identities=16% Similarity=0.138 Sum_probs=38.5
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 021226 138 HSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKNKISVEELQLCLEELEESI 217 (315)
Q Consensus 138 ~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~Ie~a~~n~~v~~al~~g~~aLK~~~i~~e~Ve~~mddi~E~~ 217 (315)
..++..+|-+++-.-+..-+.-+....+.+.+.+.|..-+.|+ -.+.+||+...-++....++++.+++.+
T Consensus 1537 T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq---------~~a~~ai~~a~~~~~~a~~~l~kv~~~t 1607 (1758)
T KOG0994|consen 1537 TKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQ---------GEAQDAIQGADRDIRLAQQLLAKVQEET 1607 (1758)
T ss_pred hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5677778877776555555444444444443333333333332 2233334433334445555666666655
Q ss_pred HHHHHH
Q 021226 218 DLQKQA 223 (315)
Q Consensus 218 ~~~~EI 223 (315)
+-.+.-
T Consensus 1608 ~~aE~~ 1613 (1758)
T KOG0994|consen 1608 AAAEKL 1613 (1758)
T ss_pred HHHHHH
Confidence 555543
No 61
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=35.64 E-value=2.5e+02 Score=25.19 Aligned_cols=71 Identities=14% Similarity=0.197 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021226 110 WTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAI 189 (315)
Q Consensus 110 ~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~Ie~a~~n~~v~~al 189 (315)
..+..++.-+..|+.+++++.+.++.++..|+ .|...-+.+ .+.++.+.. .+..+..|-++|
T Consensus 2 ~~~~~~E~~~~~le~~l~kl~K~~~~~~d~g~-----~~~~a~~~F-------~~~l~d~~~------~~~gd~~i~~~L 63 (200)
T cd07637 2 ATIDEVETDVVEIEAKLDKLVKLCSGMIEAGK-----AYATTNKLF-------VSGIRDLSQ------QCKKDEMISECL 63 (200)
T ss_pred chHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH-------HHHHHHHHH------HcCCchHHHHHH
Confidence 35677788888899999888888888887763 222222222 222222222 245556666777
Q ss_pred HHHHHHHHh
Q 021226 190 QIGAQAIKK 198 (315)
Q Consensus 190 ~~g~~aLK~ 198 (315)
+.=+.+|+.
T Consensus 64 ~kF~~~l~e 72 (200)
T cd07637 64 DKFGDSLQE 72 (200)
T ss_pred HHHHHHHHH
Confidence 777777776
No 62
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=35.39 E-value=1.4e+02 Score=21.51 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021226 110 WTVEKLQLQLDIIDRHYEMSR 130 (315)
Q Consensus 110 ~~~~~L~~qi~~Le~~i~~~~ 130 (315)
..+.+|++++..++..|+...
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~ 24 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLE 24 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554444
No 63
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=34.52 E-value=3.8e+02 Score=26.77 Aligned_cols=32 Identities=19% Similarity=0.138 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021226 104 DVLHLIWTVEKLQLQLDIIDRHYEMSRKSALA 135 (315)
Q Consensus 104 ~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~ 135 (315)
.|+.|-.....+..+++.|..+...+.+..+.
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777777666665544
No 64
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=34.24 E-value=5.7e+02 Score=26.79 Aligned_cols=84 Identities=14% Similarity=0.112 Sum_probs=53.4
Q ss_pred HHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHH----HHHHH----HHHHHHHHHHHHHh----cCCChHHHHHHHH
Q 021226 145 ALRHAKQLKL-TKESREKCTSLLNRVEEVLSLIENA----ESTKK----VSEAIQIGAQAIKK----NKISVEELQLCLE 211 (315)
Q Consensus 145 Al~~Lr~KK~-~ek~L~~~~~~l~nLe~~l~~Ie~a----~~n~~----v~~al~~g~~aLK~----~~i~~e~Ve~~md 211 (315)
+...||.++. ++.-+.+..+++.++.......+.. +.+.+ =.++++.-++-||. .++++++|+.+--
T Consensus 260 ~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~ 339 (581)
T KOG0995|consen 260 KEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNL 339 (581)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 4556666665 6666666666655555433322221 11111 13567777777887 2999999999999
Q ss_pred HHHHHHHHHHHHHHHhC
Q 021226 212 ELEESIDLQKQAEKVIV 228 (315)
Q Consensus 212 di~E~~~~~~EI~~~L~ 228 (315)
+-.+.....+.|+-.+.
T Consensus 340 Er~~l~r~l~~i~~~~d 356 (581)
T KOG0995|consen 340 ERNKLKRELNKIQSELD 356 (581)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 98888888888877663
No 65
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=33.98 E-value=3.2e+02 Score=23.86 Aligned_cols=50 Identities=16% Similarity=0.172 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 021226 120 DIIDRHYEMSRKSALASLHS-GNKTVALRHAKQLKLTKESREKCTSLLNRV 169 (315)
Q Consensus 120 ~~Le~~i~~~~~~ak~~~~~-~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nL 169 (315)
..++.++..+.....+++.. ++-..|...+++-+.+.+....+......|
T Consensus 124 ~e~~~~~~~~~~~l~~~~~~~~d~~~A~~~~~kL~y~~kl~~ei~~~~~~l 174 (176)
T PRK03578 124 AELRDERRERYAELGALLDSRGDDQAAAEAVRQLMFIEKLAQEIGAAIERL 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566666666677766 788999999999999988888776665544
No 66
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=33.57 E-value=1.1e+02 Score=23.40 Aligned_cols=31 Identities=6% Similarity=-0.116 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021226 145 ALRHAKQLKLTKESREKCTSLLNRVEEVLSL 175 (315)
Q Consensus 145 Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~ 175 (315)
-..++.+|+.+++.|..+..+...+|+....
T Consensus 4 L~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~ 34 (80)
T PF09340_consen 4 LKELLQKKKKLEKDLAALEKQIYDKETSYLE 34 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468889999999999999999999998877
No 67
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.42 E-value=3.7e+02 Score=24.41 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021226 130 RKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKK 198 (315)
Q Consensus 130 ~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~Ie~a~~n~~v~~al~~g~~aLK~ 198 (315)
+..|.+|++.+ +.|=+.=-.+.-.|.++..|+..|+..-...+.-..=..--+||++..+.|--
T Consensus 60 KR~AlqaLkrK-----K~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~mDi 123 (221)
T KOG1656|consen 60 KRMALQALKRK-----KRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNMDI 123 (221)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhccCh
Confidence 34566666544 23333334456666666667666666555555555445555666666666654
No 68
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=32.11 E-value=6.5e+02 Score=26.79 Aligned_cols=41 Identities=12% Similarity=0.240 Sum_probs=25.3
Q ss_pred HHHHHHHHhh-ccccccccccHhhHHHhhCCC--chhHHHHHHh
Q 021226 26 ADEVIKLLSE-SHWTSSCIITMKKFQDKCGGQ--DEASAVLSFL 66 (315)
Q Consensus 26 a~~i~~~~~~-~~~~s~~v~s~~~F~~~~~~~--~d~~ilL~yL 66 (315)
|.+|.....+ ..+....+=+-+.|.++|.|. +=+.+++.+-
T Consensus 3 a~el~~Wa~eEmg~p~~~~P~~~~lrrlC~G~~~~IWkfli~~V 46 (632)
T PF14817_consen 3 AEELKRWAQEEMGYPPASLPSDDYLRRLCRGNMAPIWKFLIQHV 46 (632)
T ss_pred hHHHHHHHHHHhCCCCCCCCCHHHHHHHhccCChHHHHHHHHHc
Confidence 5566666554 455555566778899999873 2244455444
No 69
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=31.90 E-value=31 Score=28.47 Aligned_cols=35 Identities=6% Similarity=0.226 Sum_probs=14.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021226 97 SISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRK 131 (315)
Q Consensus 97 ~ITe~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~ 131 (315)
.+...|..|-.|+.-+..+..++......+.....
T Consensus 63 ~L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~ 97 (133)
T PF06148_consen 63 NLVGMDEKIEELRKPLSQFREEVESVRDELDNTQE 97 (133)
T ss_dssp -----------HHHHHHHHHHHHHHHHHS-STTHH
T ss_pred HHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666777777766666666665555544443
No 70
>PLN02943 aminoacyl-tRNA ligase
Probab=31.80 E-value=1.7e+02 Score=32.55 Aligned_cols=66 Identities=14% Similarity=0.138 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 021226 104 DVLHLIWTVEKLQLQLDIIDRHYEMSRKSAL--ASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRV 169 (315)
Q Consensus 104 ~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak--~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nL 169 (315)
+++++...+.+|+++++.++.+++.+..... .++.+.....-..--++...++..+.+....+.+|
T Consensus 883 ~~iD~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~l 950 (958)
T PLN02943 883 DMVDISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFL 950 (958)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667777777777777766664221 22333333333333333334444444444444443
No 71
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=31.75 E-value=3.7e+02 Score=23.85 Aligned_cols=82 Identities=21% Similarity=0.285 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH---hCCCCCCC-CHHHH-H
Q 021226 166 LNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKV---IVPSYTGI-DDEDI-E 240 (315)
Q Consensus 166 l~nLe~~l~~Ie~a~~n~~v~~al~~g~~aLK~~~i~~e~Ve~~mddi~E~~~~~~EI~~~---L~~~~~~~-De~EL-e 240 (315)
......+..+-..|.....|-.++...+ +....-+++++++=.+.+.-..+-..++.+. +-..+... -+..+ +
T Consensus 132 k~k~~~l~ar~~~a~a~~~~~~~~~~~~--~~~a~~~~er~e~ki~~~ea~a~a~~el~~~~~~~e~~l~~~~~~~~~~~ 209 (221)
T PF04012_consen 132 KSKREELKARENAAKAQKKVNEALASFS--VSSAMDSFERMEEKIEEMEARAEASAELADSDQDLEAELEELERDSSVSE 209 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCC--ccchHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHhcCCCcchH
Confidence 3334445556666666666666665554 2222336677777776666666666666630 10001111 12233 7
Q ss_pred HHHHHHHHH
Q 021226 241 EEFKKLEQE 249 (315)
Q Consensus 241 ~EL~~Le~E 249 (315)
+||+.|-.+
T Consensus 210 ~~La~LK~~ 218 (221)
T PF04012_consen 210 DELAALKAK 218 (221)
T ss_pred HHHHHHHhH
Confidence 888887654
No 72
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.36 E-value=4.5e+02 Score=26.54 Aligned_cols=70 Identities=21% Similarity=0.173 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 021226 104 DVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLS 174 (315)
Q Consensus 104 ~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~ 174 (315)
.++.|......+..+.+.|..+.....+........+.+ .|-.++...+-+-..++.+...+..++.-+.
T Consensus 30 ~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~-~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~ 99 (429)
T COG0172 30 KLLELDEERRKLLRELEELQAERNELSKEIGRALKRGED-DAEELIAEVKELKEKLKELEAALDELEAELD 99 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 566777777777777777777666666555444444444 4555555555555555555555554444433
No 73
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=30.75 E-value=1.7e+02 Score=21.31 Aligned_cols=48 Identities=13% Similarity=0.188 Sum_probs=28.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCHHHHHHHHH
Q 021226 96 SSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRK-SALASLHSGNKTVALRHAK 150 (315)
Q Consensus 96 ~~ITe~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~-~ak~~~~~~~K~~Al~~Lr 150 (315)
..|.+...+++.+ ..|+.+|..|+.+|+.++. .++ +...|..|-.+.|
T Consensus 15 ~~i~~d~LsllsV----~El~eRIalLq~EIeRlkAe~~k---K~~srsAAeaLFr 63 (65)
T COG5509 15 HEIGNDALSLLSV----AELEERIALLQAEIERLKAELAK---KKASRSAAEALFR 63 (65)
T ss_pred cccchhHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHh---hhccHHHHHHHHh
Confidence 3566444666554 5577778888888887774 222 4444555554444
No 74
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=30.72 E-value=1.6e+02 Score=32.74 Aligned_cols=66 Identities=12% Similarity=0.108 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 021226 105 VLHLIWTVEKLQLQLDIIDRHYEMSRKSA--LASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVE 170 (315)
Q Consensus 105 I~~Lk~~~~~L~~qi~~Le~~i~~~~~~a--k~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe 170 (315)
++++...+.+|+++++.++.+++.+...- ..++.+.....-...-++..-++..++++...+.+|.
T Consensus 924 ~id~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l~~l~ 991 (995)
T PTZ00419 924 FIDLKKELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAIEELK 991 (995)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666555421 1122222222222222233334445555555544444
No 75
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=30.46 E-value=88 Score=18.30 Aligned_cols=19 Identities=16% Similarity=0.406 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021226 112 VEKLQLQLDIIDRHYEMSR 130 (315)
Q Consensus 112 ~~~L~~qi~~Le~~i~~~~ 130 (315)
++.|..+|..|+++++.|.
T Consensus 3 ~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4667788888888888775
No 76
>PRK11637 AmiB activator; Provisional
Probab=30.32 E-value=5.5e+02 Score=25.41 Aligned_cols=32 Identities=6% Similarity=0.167 Sum_probs=15.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021226 98 ISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMS 129 (315)
Q Consensus 98 ITe~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~ 129 (315)
|......|-.+...+..++.+|..++.+++..
T Consensus 91 i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 91 LRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555554433
No 77
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=30.24 E-value=3.7e+02 Score=23.44 Aligned_cols=50 Identities=12% Similarity=0.047 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 021226 121 IIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVE 170 (315)
Q Consensus 121 ~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe 170 (315)
.+..++..+.....+++..++-..|...+++-+.+.+..+.+......|.
T Consensus 122 ~v~~~~~~~~~~l~~~~~~~d~~~A~~~~~rL~y~~kl~~ei~~~~~~l~ 171 (173)
T PRK01773 122 EIKQEQQAILTELSTALNSQQWQQASQINDRLRFIKKLIIEIERVEEKLF 171 (173)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555666778889999999999999999999888777666554
No 78
>PRK14155 heat shock protein GrpE; Provisional
Probab=30.14 E-value=4.2e+02 Score=23.97 Aligned_cols=26 Identities=0% Similarity=-0.118 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Q 021226 152 LKLTKESREKCTSLLNRVEEVLSLIE 177 (315)
Q Consensus 152 KK~~ek~L~~~~~~l~nLe~~l~~Ie 177 (315)
+-..++.+..+...++||+-.+..+.
T Consensus 59 ~~a~~~~~~~LLpV~DnLerAl~~~~ 84 (208)
T PRK14155 59 AYAIQKFARDLLGAADNLGRATAASP 84 (208)
T ss_pred HHHHHHHHHHHhhHHhhHHHHHhccc
Confidence 33445566666666666666665543
No 79
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=29.96 E-value=1.5e+02 Score=21.37 Aligned_cols=27 Identities=15% Similarity=0.367 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021226 101 LDYDVLHLIWTVEKLQLQLDIIDRHYE 127 (315)
Q Consensus 101 ~D~~I~~Lk~~~~~L~~qi~~Le~~i~ 127 (315)
.+.-+..|...+..+++++..++.+++
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 466778888888899999988888885
No 80
>PRK05560 DNA gyrase subunit A; Validated
Probab=29.41 E-value=7.8e+02 Score=26.88 Aligned_cols=85 Identities=21% Similarity=0.288 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHh---cCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 021226 165 LLNRVEEVLSLIENAESTKKVSEAIQI-------GAQAIKK---NKISVEELQLCLEELEESIDLQKQAEKVIVPSYTGI 234 (315)
Q Consensus 165 ~l~nLe~~l~~Ie~a~~n~~v~~al~~-------g~~aLK~---~~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~~~ 234 (315)
.+.++..++.-|..+.+..++...|.. ..+++=. ..++-.+++++..++.+.....++...+|+.. ..
T Consensus 381 ~~~~~d~vI~iir~s~~~~~~~~~L~~~f~~~~~qa~~IL~m~L~~LT~~e~~kL~~E~~~l~~ei~~l~~iL~~~--~~ 458 (805)
T PRK05560 381 ALDNIDEVIALIRASPTPAEAKEGLMERFGLSEIQAQAILDMRLQRLTGLERDKIEDEYKELLALIADLKDILASP--ER 458 (805)
T ss_pred HHHhhHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HH
Confidence 356666777777777777666666655 2333333 27788889999999999999999999999651 00
Q ss_pred CHHHHHHHHHHHHHHHh
Q 021226 235 DDEDIEEEFKKLEQEVE 251 (315)
Q Consensus 235 De~ELe~EL~~Le~E~~ 251 (315)
=..-+-+||.++...-.
T Consensus 459 l~~~i~~EL~~ikkkfg 475 (805)
T PRK05560 459 LLEIIKEELLEIKEKFG 475 (805)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 12345666666655443
No 81
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=27.88 E-value=4.6e+02 Score=23.72 Aligned_cols=50 Identities=14% Similarity=0.088 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 021226 101 LDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAK 150 (315)
Q Consensus 101 ~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr 150 (315)
.=..++++.....+|...+..|+..-...........-.|....|..+++
T Consensus 40 l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~~m~~v~~~~~~a~~~mn 89 (204)
T COG5491 40 LAEELYKLRKARSRLDASISRLQSLDTMLFEKVVMRQVSGDMAKAAMYMN 89 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 33455666666666666666666643333333333444566666665554
No 82
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=27.86 E-value=8.6e+02 Score=26.89 Aligned_cols=113 Identities=12% Similarity=0.193 Sum_probs=68.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCChHHHHHHHHHHHHHHHHH-HHHHHHhCCC----
Q 021226 159 REKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKK---NKISVEELQLCLEELEESIDLQ-KQAEKVIVPS---- 230 (315)
Q Consensus 159 L~~~~~~l~nLe~~l~~Ie~a~~n~~v~~al~~g~~aLK~---~~i~~e~Ve~~mddi~E~~~~~-~EI~~~L~~~---- 230 (315)
+......|+ .+...||.- +=...-+.|+.+-++|+. .|-+-+.|+++|+++++.|++. ++..+-....
T Consensus 479 l~~v~~~LW---~lAl~iEdG-~ls~A~~~Lr~AQ~aL~eAL~~gAsdeEI~~Lm~eLR~Am~~ym~~LAeq~~~~~~~~ 554 (851)
T TIGR02302 479 LRDVADNLW---SLALGIEDG-DLSDAERRLRAAQDALKDALERGASDEEIKQLTDKLRAAMQTYMRQLAQQLRNNPQQL 554 (851)
T ss_pred HHHHHHHHH---HHHHHhhcC-CHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccc
Confidence 444444444 344555552 223445688888889988 4889999999999999998754 3333322111
Q ss_pred -------CCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCcccHHHHHHHhhcCccC
Q 021226 231 -------YTGIDDEDIEEEFKKLEQEVECERPKPTVSKTGVNEPAASESAESLRVAFSTIGLN 286 (315)
Q Consensus 231 -------~~~~De~ELe~EL~~Le~E~~~e~~~p~~~~~~~~~~~~~~~~~~l~~~L~~L~l~ 286 (315)
...+..++|++-++.|+.-...-.. . ....--++|..+|+||.+.
T Consensus 555 ~~~~~~~~~~l~~~dLq~Mmd~ieela~~G~~----------~-~A~qlL~qlq~mmenlq~~ 606 (851)
T TIGR02302 555 ARPLDPNTKVLRQQDLQNMMDQIENLARSGDR----------D-QAKQLLSQLQQMMNNLQMG 606 (851)
T ss_pred cccCCccccccCHHHHHHHHHHHHHHHHcCCH----------H-HHHHHHHHHHHHHHHHhcc
Confidence 1135678888888888754432110 0 0022345677788888873
No 83
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=27.86 E-value=5.5e+02 Score=24.63 Aligned_cols=144 Identities=13% Similarity=0.228 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 021226 103 YDVLHLIWTVEKLQLQLDIIDRHYEMSRK--SALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAE 180 (315)
Q Consensus 103 ~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~--~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~Ie~a~ 180 (315)
..+..+...+..|.+++..|......+-. -.-..++.+++..+..+=+..-..--.+.........|......++...
T Consensus 169 q~~~~~~~~l~~leqRi~DL~~~~~va~Q~~pqir~iq~nN~~Li~ki~~a~~~TIP~~k~~~~ial~l~~Qk~a~~~~~ 248 (333)
T PF05816_consen 169 QELADLEQALFRLEQRIQDLQLSRQVAIQTAPQIRMIQNNNRELIEKIQSAITTTIPAWKNQLAIALALQRQKKALDAQQ 248 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788899999999999988887655544 3445677888777666555554444444444333333333333222221
Q ss_pred H-HHHHHHHHHHHHHHHHh--------c---CCChHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Q 021226 181 S-TKKVSEAIQIGAQAIKK--------N---KISVEELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEQ 248 (315)
Q Consensus 181 ~-n~~v~~al~~g~~aLK~--------~---~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~~~De~ELe~EL~~Le~ 248 (315)
. +...=+-|...++.|+. . -+++|.++.+-+++-+.++....|..--.. .-.+.+.+|..|+.
T Consensus 249 av~~tTnell~~nAe~lk~~~~~iak~~~~~~vdiEtL~~~~~~li~ti~e~~~i~~e~~~-----~r~~~~~~l~~l~~ 323 (333)
T PF05816_consen 249 AVNDTTNELLRRNAEMLKQNSVEIAKEAERPVVDIETLKKAFQNLIETIEETDQIQEEGRE-----KRAQAEQELEQLEE 323 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 1 11111123333444443 1 459999999999998888888877764422 23456677777776
Q ss_pred HHh
Q 021226 249 EVE 251 (315)
Q Consensus 249 E~~ 251 (315)
+..
T Consensus 324 ~lk 326 (333)
T PF05816_consen 324 ELK 326 (333)
T ss_pred HHH
Confidence 654
No 84
>PRK14158 heat shock protein GrpE; Provisional
Probab=27.76 E-value=4.4e+02 Score=23.53 Aligned_cols=33 Identities=9% Similarity=-0.082 Sum_probs=21.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021226 98 ISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSR 130 (315)
Q Consensus 98 ITe~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~ 130 (315)
-+..+..+-.++..+..|+.++..+..++-.+.
T Consensus 35 ~~~~~~~~~~le~~l~~le~e~~el~d~~lR~~ 67 (194)
T PRK14158 35 PVAAADRIKELEEALAAKEAEAAANWDKYLRER 67 (194)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777777777666654443
No 85
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=27.46 E-value=4.6e+02 Score=23.57 Aligned_cols=84 Identities=11% Similarity=0.080 Sum_probs=46.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHH-----------
Q 021226 98 ISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLL----------- 166 (315)
Q Consensus 98 ITe~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l----------- 166 (315)
....|--+..|+..+..|+.++...+...+.. .+........ -|+.+|+.|+=...+|
T Consensus 91 ~~~~dwEevrLkrELa~Le~~l~~~~~~~~~~---------~~~~~~~~~l--vk~e~EqLL~YK~~ql~~~~~~~~~~~ 159 (195)
T PF12761_consen 91 TEGTDWEEVRLKRELAELEEKLSKVEQAAESR---------RSDTDSKPAL--VKREFEQLLDYKERQLRELEEGRSKSG 159 (195)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc---------ccCCcchHHH--HHHHHHHHHHHHHHHHHhhhccCCCCC
Confidence 45678777777777666666666655554432 1111111111 1334555555333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021226 167 NRVEEVLSLIENAESTKKVSEAIQIG 192 (315)
Q Consensus 167 ~nLe~~l~~Ie~a~~n~~v~~al~~g 192 (315)
.+|..+-..|+....++.+++.|-.+
T Consensus 160 ~~l~~v~~Dl~~ie~QV~~Le~~L~~ 185 (195)
T PF12761_consen 160 KNLKSVREDLDTIEEQVDGLESHLSS 185 (195)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777766543
No 86
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=27.25 E-value=6.3e+02 Score=25.14 Aligned_cols=38 Identities=11% Similarity=-0.026 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021226 103 YDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSG 140 (315)
Q Consensus 103 ~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~ 140 (315)
-.|+.+-.....+..+++.|..+...+.+..+...+.+
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~ 67 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQK 67 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 35777778888888888888887777776665433333
No 87
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=27.24 E-value=2.4e+02 Score=27.95 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q 021226 150 KQLKLTKESREKCTSLLNRVEEVL 173 (315)
Q Consensus 150 r~KK~~ek~L~~~~~~l~nLe~~l 173 (315)
++++.++++++.....+..+++++
T Consensus 273 ~k~~~~~~q~~~~~k~~~~~~~~~ 296 (406)
T PF02388_consen 273 NKLKELEEQLASLEKRIEEAEELI 296 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566665555555555543
No 88
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=27.16 E-value=1.2e+02 Score=20.69 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021226 108 LIWTVEKLQLQLDIIDRHYEMSRKS 132 (315)
Q Consensus 108 Lk~~~~~L~~qi~~Le~~i~~~~~~ 132 (315)
|+...++++++|+.++.+|..+..+
T Consensus 10 Lqe~~d~IEqkiedid~qIaeLe~K 34 (46)
T PF08946_consen 10 LQEHYDNIEQKIEDIDEQIAELEAK 34 (46)
T ss_dssp -----THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHhHHHHHHHHHHHHHH
Confidence 5667778888888888888776643
No 89
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=27.06 E-value=3.9e+02 Score=22.65 Aligned_cols=75 Identities=11% Similarity=0.051 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021226 119 LDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKK 198 (315)
Q Consensus 119 i~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~Ie~a~~n~~v~~al~~g~~aLK~ 198 (315)
++.|...++... ..+.+-.+-.-.+++| |-.|.+.++++...+...-++-.+..+..+.+.+..-+..-+.-|+.
T Consensus 68 ~e~L~~~L~~g~----~LV~k~sk~~r~n~~k-k~~y~~Ki~~le~~l~~f~~v~~q~~~~~D~~~l~~~~~e~~~kl~~ 142 (147)
T PF05659_consen 68 IERLKELLEKGK----ELVEKCSKVRRWNLYK-KPRYARKIEELEESLRRFIQVDLQLHQLRDIKELLAKMSEMNTKLDD 142 (147)
T ss_pred HHHHHHHHHHHH----HHHHHhccccHHHHHh-hHhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444 3444444444344553 44477888888888888888888888888888877766665555543
No 90
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=27.03 E-value=2.8e+02 Score=20.98 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=32.3
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021226 95 VSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRK 131 (315)
Q Consensus 95 ~~~ITe~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~ 131 (315)
.|+|...|..+..+......|..+++.+..++..+..
T Consensus 13 ~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~ 49 (92)
T PF14712_consen 13 EPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNE 49 (92)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999988877775
No 91
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=26.54 E-value=7.8e+02 Score=25.94 Aligned_cols=137 Identities=15% Similarity=0.121 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCHHH-----HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 021226 100 SLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRK-SALASLHSGNKTV-----ALRHAKQLKLTKESREKCTSLLNRVEEVL 173 (315)
Q Consensus 100 e~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~-~ak~~~~~~~K~~-----Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l 173 (315)
+-|..|.+|+..++.-..++..|..+|+..+. ...++-.-..+.. +...+..-|.+...+.....-+..-++.+
T Consensus 391 d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~ 470 (594)
T PF05667_consen 391 DAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELY 470 (594)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCH
Q 021226 174 SL----IENAESTKKVSEAIQIGAQAIKKNKISVEELQLCLEELEESIDLQKQAEKVIVPSYTGIDD 236 (315)
Q Consensus 174 ~~----Ie~a~~n~~v~~al~~g~~aLK~~~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~~~De 236 (315)
.+ ++....++.=-.=.+--.++.+++.=.-++|++++.|.+...-..+-+..-|..++...||
T Consensus 471 ~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dE 537 (594)
T PF05667_consen 471 KQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDE 537 (594)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
No 92
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=26.32 E-value=4.3e+02 Score=22.88 Aligned_cols=47 Identities=13% Similarity=0.244 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 021226 123 DRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRV 169 (315)
Q Consensus 123 e~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nL 169 (315)
..++..+......++..++-..|..++++-+.+.+....+......|
T Consensus 123 ~~~~~~~~~~l~~~~~~~d~~~A~~~~~~Lky~~kl~~ei~~~~~~l 169 (171)
T PRK05014 123 KKMFKTRLQQMVEQLDNEAWDAAADTVRKLKFLDKLRSEVEQLEEKL 169 (171)
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444555667788899999999999999999888777666554
No 93
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=25.39 E-value=1.6e+02 Score=21.30 Aligned_cols=19 Identities=11% Similarity=0.270 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021226 113 EKLQLQLDIIDRHYEMSRK 131 (315)
Q Consensus 113 ~~L~~qi~~Le~~i~~~~~ 131 (315)
+.|+.+|..|+.+|..++.
T Consensus 24 ~EL~~RIa~L~aEI~R~~~ 42 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEA 42 (59)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566667777777776664
No 94
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=25.29 E-value=3.2e+02 Score=21.12 Aligned_cols=28 Identities=11% Similarity=0.214 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021226 100 SLDYDVLHLIWTVEKLQLQLDIIDRHYE 127 (315)
Q Consensus 100 e~D~~I~~Lk~~~~~L~~qi~~Le~~i~ 127 (315)
.....+-.|......++.+......+|.
T Consensus 18 ~~~~~~~~l~~~~~~l~~~~~~~~~~I~ 45 (127)
T smart00502 18 ELEDALKQLISIIQEVEENAADVEAQIK 45 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555554444444443
No 95
>PF09440 eIF3_N: eIF3 subunit 6 N terminal domain; InterPro: IPR019010 This entry represents the N-terminal domain of subunit 6 (or e) (eIF3e) of the translation initiation factor eIF3. EIF3 is required in protein synthesis in mammalian cells and, together with other initiation factors, stimulates binding of initiator methionyl-tRNAi and mRNA to the 40S ribosomal subunit to form the 48 S initiation complex []. The eIF3 complex also prevents premature association of the 40 and 60 S ribosomal subunits and interacts with other initiation factors involved in start codon selection. EIF3 has at least 13 protein components (eIF3a-m or 1-13), where subunits h, i, k, and m are likely to be on the periphery of the complex []. Subunit 6 is produced by the int6 gene, one of the frequent integration sites for mouse mammary tumor viruses [].
Probab=24.88 E-value=4.1e+02 Score=22.18 Aligned_cols=49 Identities=12% Similarity=0.162 Sum_probs=29.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHh-cCCChHHHHHHHH
Q 021226 163 TSLLNRVEEVLSLIENAESTKKVSEAIQIGAQA----IKK-NKISVEELQLCLE 211 (315)
Q Consensus 163 ~~~l~nLe~~l~~Ie~a~~n~~v~~al~~g~~a----LK~-~~i~~e~Ve~~md 211 (315)
...+..+++-...|-..-.|.+|+..+++-... |++ .|+++|.|+.+.+
T Consensus 75 l~~l~~l~~~~~~v~~~~~~~ev~~~l~~dk~~nl~~L~~~h~it~e~id~LY~ 128 (133)
T PF09440_consen 75 LAELKELEEETEPVLELLEDPEVVKNLRSDKKQNLEYLEENHGITPEMIDALYK 128 (133)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHccHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 334444445555555555667777777664333 333 4999999988764
No 96
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=24.62 E-value=4.3e+02 Score=22.25 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 021226 146 LRHAKQLKLTKESREKCTSLLNRVEEVL 173 (315)
Q Consensus 146 l~~Lr~KK~~ek~L~~~~~~l~nLe~~l 173 (315)
-.+=|+-.++|..|++....|.....-+
T Consensus 76 E~l~rriq~LEeele~ae~~L~e~~ekl 103 (143)
T PF12718_consen 76 EQLNRRIQLLEEELEEAEKKLKETTEKL 103 (143)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777776666554443333
No 97
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.60 E-value=7.7e+02 Score=25.21 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=25.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 021226 202 SVEELQLCLEELEESIDLQKQAEKVIVPSYTGID 235 (315)
Q Consensus 202 ~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~~~D 235 (315)
.-.+|-+++++.++..-.-+-+++.|..+++.+|
T Consensus 401 q~~DI~Kil~etreLqkq~ns~se~L~Rsfavtd 434 (521)
T KOG1937|consen 401 QEQDIVKILEETRELQKQENSESEALNRSFAVTD 434 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3467888888888888888888888877655433
No 98
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=24.46 E-value=9.5e+02 Score=26.23 Aligned_cols=85 Identities=24% Similarity=0.335 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHh---cCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 021226 165 LLNRVEEVLSLIENAESTKKVSEAIQI-------GAQAIKK---NKISVEELQLCLEELEESIDLQKQAEKVIVPSYTGI 234 (315)
Q Consensus 165 ~l~nLe~~l~~Ie~a~~n~~v~~al~~-------g~~aLK~---~~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~~~ 234 (315)
.+.++..++.-|..+.+..++...|.. ..+++=. ..++-.+++.+..++.+.....+++..+|+.. ..
T Consensus 378 ~~~~~d~vi~~ir~~~~~~~~~~~L~~~~~~~~~qa~~il~m~L~~Lt~~e~~kl~~e~~~l~~ei~~l~~iL~~~--~~ 455 (800)
T TIGR01063 378 ALDNIDEVIALIRASQNTEEAKTRLVERFSLSEIQAQAILDMRLQRLTGLEREKLQEEYKELLELIADLEDILASE--ER 455 (800)
T ss_pred HHHhhhHHHHHHHhCCCHHHHHHHHHHhcCCCHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCH--HH
Confidence 455666666666666666666666554 2333333 27788889999999999999999999999651 00
Q ss_pred CHHHHHHHHHHHHHHHh
Q 021226 235 DDEDIEEEFKKLEQEVE 251 (315)
Q Consensus 235 De~ELe~EL~~Le~E~~ 251 (315)
=..-|-+||.++-..-.
T Consensus 456 l~~vi~~EL~eikkkfg 472 (800)
T TIGR01063 456 VLEIIREELEEIKEQFG 472 (800)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 12346667766655443
No 99
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=23.88 E-value=5.4e+02 Score=23.17 Aligned_cols=81 Identities=15% Similarity=0.171 Sum_probs=45.3
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 021226 110 WTVEKLQLQLD---IIDRHYEMSRKSALASLHSGNKTVALRHAKQLK-----LTKESREKCTSLLNRVEEVLSLIENAES 181 (315)
Q Consensus 110 ~~~~~L~~qi~---~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK-----~~ek~L~~~~~~l~nLe~~l~~Ie~a~~ 181 (315)
.++-.|..|-+ .+.++++.+-. ..|+.|+.|||... ++-+..---...+.+....+..||+-.+
T Consensus 16 rAIL~lK~QRdkl~qyqkR~e~~le--------~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqmvs 87 (209)
T KOG2910|consen 16 RAILSLKTQRDKLKQYQKRLEKQLE--------AERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQMVS 87 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555444 34444444433 35788888887532 2222222223456677777888888777
Q ss_pred HHHHHHHHHHHHHHHHh
Q 021226 182 TKKVSEAIQIGAQAIKK 198 (315)
Q Consensus 182 n~~v~~al~~g~~aLK~ 198 (315)
+.+.-..-+.--.-||.
T Consensus 88 diEft~vqk~V~~gLk~ 104 (209)
T KOG2910|consen 88 DIEFTQVQKKVMEGLKQ 104 (209)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77766655555555554
No 100
>PF13763 DUF4167: Domain of unknown function (DUF4167)
Probab=23.83 E-value=1.6e+02 Score=22.68 Aligned_cols=38 Identities=13% Similarity=0.029 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 021226 123 DRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESRE 160 (315)
Q Consensus 123 e~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~ 160 (315)
++-++++...|+.+..+|+|..|-.||.-=-.+-..|.
T Consensus 36 ~ql~EKY~~LArDA~ssGDrV~aEny~QHAeHY~Ril~ 73 (80)
T PF13763_consen 36 QQLIEKYNQLARDAQSSGDRVLAENYLQHAEHYFRILA 73 (80)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 34467788899999999999999999876544444433
No 101
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=22.80 E-value=8e+02 Score=26.48 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHH
Q 021226 170 EEVLSLIENAESTKK 184 (315)
Q Consensus 170 e~~l~~Ie~a~~n~~ 184 (315)
+.+..+++.+....+
T Consensus 596 e~LaeR~e~a~d~Qe 610 (717)
T PF10168_consen 596 EKLAERYEEAKDKQE 610 (717)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344456666665544
No 102
>PRK09343 prefoldin subunit beta; Provisional
Probab=22.68 E-value=1.4e+02 Score=24.36 Aligned_cols=41 Identities=12% Similarity=-0.062 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 021226 101 LDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGN 141 (315)
Q Consensus 101 ~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~ 141 (315)
+...+=-+...+..|+++.+.|+.++..+....+.++..+.
T Consensus 76 l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~ 116 (121)
T PRK09343 76 LKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYY 116 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33334444444444444555555555555555555555443
No 103
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=22.45 E-value=5.5e+02 Score=22.77 Aligned_cols=29 Identities=10% Similarity=0.165 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 021226 152 LKLTKESREKCTSLLNRVEEVLSLIENAE 180 (315)
Q Consensus 152 KK~~ek~L~~~~~~l~nLe~~l~~Ie~a~ 180 (315)
|..+++.+..+...++||+-.+..+....
T Consensus 82 k~a~e~~~~dlLpviDnlerAl~~~~~~~ 110 (193)
T COG0576 82 KYAIEKFAKDLLPVIDNLERALEAAEDDK 110 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 66778888888889999988888776663
No 104
>COG3078 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.30 E-value=1.8e+02 Score=25.07 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Q 021226 205 ELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKL 246 (315)
Q Consensus 205 ~Ve~~mddi~E~~~~~~EI~~~L~~~~~~~De~ELe~EL~~L 246 (315)
-||..+|.|.+.|+. |+-.+ +.|+++|+.+++.+
T Consensus 130 ~VD~~LDRI~~LMe~-------LGl~~-dddEdDl~~~~~q~ 163 (169)
T COG3078 130 WVDAKLDRIDELMEK-------LGLSY-DDDEDDLERDEKQE 163 (169)
T ss_pred HHHHHHHHHHHHHHH-------hCCcc-CCchHHHHHHHHHH
Confidence 377777777666654 34323 34688888888765
No 105
>PRK14145 heat shock protein GrpE; Provisional
Probab=22.00 E-value=5.8e+02 Score=22.86 Aligned_cols=70 Identities=6% Similarity=-0.066 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 021226 101 LDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRH-AKQLKLTKESREKCTSLLNRVEEVLS 174 (315)
Q Consensus 101 ~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~-Lr~KK~~ek~L~~~~~~l~nLe~~l~ 174 (315)
....+-.|+..+..+..++..+..++-.+....- +-+|..++.. --++...++.+..+...++||+-.+.
T Consensus 43 ~~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfe----N~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnLerAl~ 113 (196)
T PRK14145 43 TVDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFE----NYRKRTEKEKSEMVEYGKEQVILELLPVMDNFERALA 113 (196)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHh
Confidence 4444556666666666666655555443333222 1122222211 12333445556666666666665553
No 106
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=21.91 E-value=3.2e+02 Score=30.01 Aligned_cols=27 Identities=15% Similarity=0.300 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021226 105 VLHLIWTVEKLQLQLDIIDRHYEMSRK 131 (315)
Q Consensus 105 I~~Lk~~~~~L~~qi~~Le~~i~~~~~ 131 (315)
++++...+.+|++++..++.+++.+..
T Consensus 806 ~id~~~e~~rL~K~l~kl~~ei~~~~~ 832 (874)
T PRK05729 806 LIDVEAELARLEKELAKLEKEIERVEK 832 (874)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555556666666666666655554
No 107
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=21.90 E-value=4.7e+02 Score=21.80 Aligned_cols=32 Identities=16% Similarity=0.358 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 021226 147 RHAKQLKLTKESREKCTSLLNRVEEVLSLIEN 178 (315)
Q Consensus 147 ~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~Ie~ 178 (315)
.+|.+=.-+...|.++...++.+-..+.+|.+
T Consensus 84 e~L~kv~els~~L~~~~~lL~~~v~~ie~LN~ 115 (131)
T PF10158_consen 84 EQLEKVNELSQQLSRCQSLLNQTVPSIETLNE 115 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555566665555555555555443
No 108
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=21.76 E-value=6.5e+02 Score=23.32 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021226 181 STKKVSEAIQIGAQAIK 197 (315)
Q Consensus 181 ~n~~v~~al~~g~~aLK 197 (315)
++..-+++|..--.+++
T Consensus 86 ~~~~e~~aL~~E~~~ak 102 (239)
T COG1579 86 KDERELRALNIEIQIAK 102 (239)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 109
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=21.76 E-value=7.1e+02 Score=24.86 Aligned_cols=29 Identities=14% Similarity=0.207 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021226 102 DYDVLHLIWTVEKLQLQLDIIDRHYEMSR 130 (315)
Q Consensus 102 D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~ 130 (315)
...+-.|+..+..+..++..|+..+..+.
T Consensus 333 ~~~~~~l~~~~~~~~~~l~~l~~~l~~l~ 361 (451)
T PF03961_consen 333 KEKLEELEEELEELKEELEKLKKNLKKLK 361 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444555555555555555555444433
No 110
>PLN02678 seryl-tRNA synthetase
Probab=21.68 E-value=8.5e+02 Score=24.66 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021226 104 DVLHLIWTVEKLQLQLDIIDRHYEMSRKSALA 135 (315)
Q Consensus 104 ~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~ 135 (315)
.|+.+-.....+..+++.|..+.....+..+.
T Consensus 34 ~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~ 65 (448)
T PLN02678 34 EVIALDKEWRQRQFELDSLRKEFNKLNKEVAK 65 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777778888888888777777765543
No 111
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=21.53 E-value=5.3e+02 Score=22.25 Aligned_cols=63 Identities=22% Similarity=0.262 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------------HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 021226 111 TVEKLQLQLDIIDRHYEMSR-------------KSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIE 177 (315)
Q Consensus 111 ~~~~L~~qi~~Le~~i~~~~-------------~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~Ie 177 (315)
+...-..+++.|+.++...+ ..+.=+.+-|+++.|+.+.. +.++.+.+.-+.+.-.+..|.
T Consensus 8 ~~~~~~~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~------~~~~~~~~~~~~id~~l~~ir 81 (177)
T PF10602_consen 8 TKAKNAEELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYS------RARDYCTSPGHKIDMCLNVIR 81 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHH------HHhhhcCCHHHHHHHHHHHHH
Confidence 33444445555555554432 23444556677777766554 344455555555554444444
Q ss_pred HH
Q 021226 178 NA 179 (315)
Q Consensus 178 ~a 179 (315)
-+
T Consensus 82 v~ 83 (177)
T PF10602_consen 82 VA 83 (177)
T ss_pred HH
Confidence 44
No 112
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=21.41 E-value=7.5e+02 Score=25.98 Aligned_cols=67 Identities=12% Similarity=0.161 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HH-HHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 021226 111 TVEKLQLQLDIIDRHYEMSRKSA-LA-SLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIE 177 (315)
Q Consensus 111 ~~~~L~~qi~~Le~~i~~~~~~a-k~-~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~Ie 177 (315)
.+..|+.+|..|+.++..+.... .. ....+....+..+.+....+++.++.++.....|+..+..++
T Consensus 564 ~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~ 632 (638)
T PRK10636 564 EIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQML 632 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666666666665555421 11 112222335666667777788888888888888887665554
No 113
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=21.00 E-value=5.4e+02 Score=22.10 Aligned_cols=18 Identities=39% Similarity=0.674 Sum_probs=12.3
Q ss_pred CCCCC-CHHHHHHHHHHHH
Q 021226 230 SYTGI-DDEDIEEEFKKLE 247 (315)
Q Consensus 230 ~~~~~-De~ELe~EL~~Le 247 (315)
.+.++ +-++++.+++++-
T Consensus 130 ~~~~f~~~~~~~~~~~~~~ 148 (154)
T PRK00464 130 VYRSFKDVDDFEEEIEELA 148 (154)
T ss_pred hcCCCCCHHHHHHHHHHHH
Confidence 35566 4677888887754
No 114
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=20.81 E-value=1.3e+03 Score=26.42 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=18.8
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHH
Q 021226 199 NKISVEELQLCLEELEESIDLQKQAEK 225 (315)
Q Consensus 199 ~~i~~e~Ve~~mddi~E~~~~~~EI~~ 225 (315)
.|++...|..+-..+.......+.|..
T Consensus 766 ~GvD~~~I~~l~~~i~~L~~~l~~ie~ 792 (1201)
T PF12128_consen 766 KGVDPERIQQLKQEIEQLEKELKRIEE 792 (1201)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888888777777666655555544
No 115
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=20.79 E-value=1.1e+03 Score=25.55 Aligned_cols=87 Identities=15% Similarity=0.240 Sum_probs=56.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHh---cCCChHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 021226 163 TSLLNRVEEVLSLIENAESTKKVSEAIQI-------GAQAIKK---NKISVEELQLCLEELEESIDLQKQAEKVIVPSYT 232 (315)
Q Consensus 163 ~~~l~nLe~~l~~Ie~a~~n~~v~~al~~-------g~~aLK~---~~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~ 232 (315)
...+.++..++.-|..+.+..++...|.. -..++=. ..++-.+++++..++.+.....+++..+|+...
T Consensus 376 ~~~~~~id~~i~iir~~~~~~~~~~~l~~~f~~~~~q~~~il~m~l~~lt~~e~~kl~~e~~~l~~~i~~l~~iL~~~~- 454 (738)
T TIGR01061 376 IKAISIIDEIIKLIRSSEDKSDAKENLIDNFKFTENQAEAIVSLRLYRLTNTDIFELKEEQNELEKKIISLEQIIASEK- 454 (738)
T ss_pred HHHHHhhhhHhHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHH-
Confidence 34455667777777666665555555544 2333333 277888899999999999999999999996610
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 021226 233 GIDDEDIEEEFKKLEQEVE 251 (315)
Q Consensus 233 ~~De~ELe~EL~~Le~E~~ 251 (315)
.=..-+-+||.++...-.
T Consensus 455 -~~~~~i~~el~~ik~kfg 472 (738)
T TIGR01061 455 -ARNKLLKKQLEEYKKQFA 472 (738)
T ss_pred -HHHHHHHHHHHHHHHHhC
Confidence 013456666766665444
No 116
>PHA02562 46 endonuclease subunit; Provisional
Probab=20.55 E-value=8.9e+02 Score=24.46 Aligned_cols=26 Identities=12% Similarity=0.127 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021226 203 VEELQLCLEELEESIDLQKQAEKVIV 228 (315)
Q Consensus 203 ~e~Ve~~mddi~E~~~~~~EI~~~L~ 228 (315)
.+.+..+.+.+.+.-...+++.+.+.
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666664
No 117
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=20.46 E-value=3.7e+02 Score=24.37 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=6.4
Q ss_pred HHHhHHHHHHHHHHH
Q 021226 161 KCTSLLNRVEEVLSL 175 (315)
Q Consensus 161 ~~~~~l~nLe~~l~~ 175 (315)
+...+...|+.++.+
T Consensus 222 ~l~~qf~~me~~i~~ 236 (239)
T PF07195_consen 222 RLRKQFSAMESLISQ 236 (239)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444443
No 118
>PRK14149 heat shock protein GrpE; Provisional
Probab=20.39 E-value=6.2e+02 Score=22.58 Aligned_cols=23 Identities=4% Similarity=-0.028 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 021226 154 LTKESREKCTSLLNRVEEVLSLI 176 (315)
Q Consensus 154 ~~ek~L~~~~~~l~nLe~~l~~I 176 (315)
..++.+..+...++||+-.+..+
T Consensus 84 a~~~~~~~LLpVlDnLerAl~~~ 106 (191)
T PRK14149 84 AYEKIALDLLPVIDALLGALKSA 106 (191)
T ss_pred HHHHHHHHHhhHHhHHHHHHhcc
Confidence 34555566666666666655543
No 119
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.33 E-value=1.4e+02 Score=21.14 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021226 105 VLHLIWTVEKLQLQLDIIDRHYEM 128 (315)
Q Consensus 105 I~~Lk~~~~~L~~qi~~Le~~i~~ 128 (315)
.+.++....+++++++.++++++.
T Consensus 43 ~~~~r~~~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 43 RLRLRRRIRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356677777777777777777654
No 120
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.23 E-value=1.2e+03 Score=25.80 Aligned_cols=76 Identities=20% Similarity=0.184 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCHHHHHHHHHHHHH
Q 021226 172 VLSLIENAESTKKVSEAIQIGAQAIKKN-KISVEELQLCLEELEESIDLQKQAEKVIVPSYTG--IDDEDIEEEFKKLEQ 248 (315)
Q Consensus 172 ~l~~Ie~a~~n~~v~~al~~g~~aLK~~-~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~~--~De~ELe~EL~~Le~ 248 (315)
=+..|+...++-....|++...+ .+ .+.+....+=-+++.=..+++++.-.+|.....+ .-.+|++.|+.....
T Consensus 877 k~~sl~~qadse~l~ka~~~~k~---~nl~lki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q~~eeie~e~~s~~~ 953 (970)
T KOG0946|consen 877 KISSLEAQADSETLSKALKTVKS---ENLSLKIVSNKQEQEELLVLLADQKEKIQALKEALEDLNQPVEEIEDEKVSIIG 953 (970)
T ss_pred hhhhHHHhhcchHHHHHHHHhhc---ccchhcccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhCCChhhHHhhhhcccc
Confidence 34445533444333334333322 12 3444444444555555566666666666442222 235577777766654
Q ss_pred HH
Q 021226 249 EV 250 (315)
Q Consensus 249 E~ 250 (315)
|.
T Consensus 954 e~ 955 (970)
T KOG0946|consen 954 EQ 955 (970)
T ss_pred hh
Confidence 43
No 121
>PF12443 AKNA: AT-hook-containing transcription factor; InterPro: IPR022150 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. This family contains a transcription factor which regulates the expression of the costimulatory molecules on lymphocytes.
Probab=20.18 E-value=1.1e+02 Score=24.71 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=31.5
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021226 95 VSSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSR 130 (315)
Q Consensus 95 ~~~ITe~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~ 130 (315)
-.+|++.+.-|.+|+...+.|..+++...++|+...
T Consensus 44 f~~~~ege~~~qkL~eqteeLK~kvqe~sk~i~~~~ 79 (106)
T PF12443_consen 44 FDKIREGEQMIQKLGEQTEELKDKVQEFSKRIEQDS 79 (106)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence 357899999999999999999999999999886544
No 122
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=20.14 E-value=6.6e+02 Score=24.10 Aligned_cols=61 Identities=23% Similarity=0.267 Sum_probs=40.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 021226 156 KESREKCTSLLNRVEEVLSLIENAESTK---KVSEAIQIGAQAIKKNKISVEELQLCLEELEES 216 (315)
Q Consensus 156 ek~L~~~~~~l~nLe~~l~~Ie~a~~n~---~v~~al~~g~~aLK~~~i~~e~Ve~~mddi~E~ 216 (315)
|..-+.....+..+-.+....+.+-.+. .+-+-|......|+.++++-..++.+++..+..
T Consensus 196 ~~~~~~~~~~~~~ig~~~~~a~~al~~~d~e~lgelm~~nq~LL~~LgVs~~~L~~lv~~a~~~ 259 (307)
T COG1577 196 EEEPEVIDPILDAIGELVQEAEAALQTGDFEELGELMNINQGLLKALGVSTPELDELVEAARSL 259 (307)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHhc
Confidence 3333444444444444445555554444 488889999999999999999999888776543
Done!