Query 021226
Match_columns 315
No_of_seqs 198 out of 757
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 14:35:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021226.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021226hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4abm_A Charged multivesicular 99.5 5.4E-13 1.8E-17 101.0 11.5 76 101-177 4-79 (79)
2 2gd5_A Charged multivesicular 99.4 3.4E-13 1.2E-17 117.5 6.3 148 100-251 11-165 (179)
3 3um3_B Charged multivesicular 99.3 2E-11 6.7E-16 96.9 9.9 54 200-253 2-58 (104)
4 3frt_A Charged multivesicular 98.8 1.6E-08 5.3E-13 90.5 9.5 148 106-253 17-171 (218)
5 2luh_B Vacuolar protein-sortin 98.7 3.4E-09 1.2E-13 74.6 0.4 50 201-250 1-55 (59)
6 3htu_B Vacuolar protein-sortin 97.5 0.00017 5.8E-09 46.8 4.8 36 96-131 2-37 (39)
7 2lxm_B Charged multivesicular 97.4 7.9E-05 2.7E-09 52.2 3.1 37 217-253 1-39 (57)
8 2gd5_A Charged multivesicular 87.4 0.65 2.2E-05 39.5 4.9 139 101-251 19-169 (179)
9 3uly_B Charged multivesicular 82.8 0.78 2.7E-05 33.1 2.6 21 233-253 7-27 (69)
10 2lw1_A ABC transporter ATP-bin 77.7 19 0.00065 26.7 9.7 67 106-172 18-85 (89)
11 3na7_A HP0958; flagellar bioge 76.9 17 0.00057 32.3 10.2 32 100-131 15-46 (256)
12 2pjp_A Selenocysteine-specific 62.5 9.7 0.00033 29.7 4.7 52 11-67 53-105 (121)
13 3frt_A Charged multivesicular 56.1 33 0.0011 30.0 7.4 89 105-196 23-114 (218)
14 1lva_A Selenocysteine-specific 48.3 32 0.0011 30.3 6.2 51 11-67 190-241 (258)
15 2dfs_A Myosin-5A; myosin-V, in 42.5 3.1E+02 0.01 29.5 13.7 16 112-127 923-938 (1080)
16 4abm_A Charged multivesicular 38.2 1.1E+02 0.0039 22.1 7.9 70 107-181 3-76 (79)
17 3kyj_A CHEA3, putative histidi 37.8 1.6E+02 0.0053 23.6 8.5 68 153-220 11-80 (144)
18 2pnv_A Small conductance calci 37.7 64 0.0022 20.9 4.7 27 105-131 11-37 (43)
19 2dq0_A Seryl-tRNA synthetase; 35.8 1.7E+02 0.0059 28.1 9.7 67 103-171 31-97 (455)
20 3cuq_C Vacuolar protein-sortin 35.6 64 0.0022 27.2 5.8 71 14-88 96-175 (176)
21 1xb4_A VPS25, hypothetical 23. 35.2 61 0.0021 28.0 5.6 72 14-89 120-200 (202)
22 3ghg_A Fibrinogen alpha chain; 35.0 3.3E+02 0.011 26.9 11.2 24 101-124 55-78 (562)
23 3m91_B Prokaryotic ubiquitin-l 35.0 19 0.00066 23.4 1.8 19 202-220 12-30 (44)
24 2lf0_A Uncharacterized protein 34.9 1.2E+02 0.004 24.0 6.6 52 115-166 8-59 (123)
25 3lss_A Seryl-tRNA synthetase; 34.2 2.7E+02 0.0091 27.1 10.7 35 104-138 38-72 (484)
26 1wle_A Seryl-tRNA synthetase; 33.1 2.6E+02 0.0091 27.2 10.6 38 101-139 69-106 (501)
27 2lch_A Protein OR38; structura 31.6 1.6E+02 0.0056 22.0 7.4 65 153-217 6-72 (113)
28 3qne_A Seryl-tRNA synthetase, 30.7 2.8E+02 0.0095 27.0 10.2 67 104-172 34-100 (485)
29 2l5g_B Putative uncharacterize 30.7 49 0.0017 21.3 3.1 24 100-123 13-36 (42)
30 1tqg_A Chemotaxis protein CHEA 29.3 1.7E+02 0.0058 21.5 7.6 65 153-217 5-71 (105)
31 3hho_A CO-chaperone protein HS 29.1 2.4E+02 0.0082 23.2 9.7 49 121-169 124-172 (174)
32 1ses_A Seryl-tRNA synthetase; 28.8 2.6E+02 0.009 26.4 9.6 64 104-171 29-92 (421)
33 2ld6_A Chemotaxis protein CHEA 28.2 2.2E+02 0.0074 22.3 7.7 67 153-219 4-72 (139)
34 2inr_A DNA topoisomerase 4 sub 28.0 4.4E+02 0.015 25.9 11.6 88 162-251 402-499 (514)
35 3mq9_A Bone marrow stromal ant 27.8 2.9E+02 0.0098 25.9 9.7 9 23-31 287-295 (471)
36 2eqb_B RAB guanine nucleotide 26.5 2.1E+02 0.0072 21.7 6.6 66 107-188 9-74 (97)
37 3qne_A Seryl-tRNA synthetase, 26.0 3.7E+02 0.013 26.1 10.2 45 140-184 13-57 (485)
38 1fpo_A HSC20, chaperone protei 24.3 2.9E+02 0.0098 22.6 7.9 61 105-165 95-164 (171)
39 3uo3_A J-type CO-chaperone JAC 24.3 2.6E+02 0.0089 23.2 7.7 44 121-164 129-172 (181)
40 2ke4_A CDC42-interacting prote 23.7 2.4E+02 0.0081 21.3 7.1 24 156-179 68-91 (98)
41 2lp4_A Chemotaxis protein CHEA 22.8 1.2E+02 0.0041 26.0 5.4 45 154-198 8-52 (225)
42 4dzn_A Coiled-coil peptide CC- 22.2 1.3E+02 0.0044 17.7 4.7 26 105-130 4-29 (33)
43 1i84_S Smooth muscle myosin he 21.9 6.7E+02 0.023 26.9 12.2 34 98-131 859-892 (1184)
44 1i5n_A Chemotaxis protein CHEA 21.9 1.8E+02 0.006 23.1 5.9 66 153-218 7-74 (146)
45 3htu_A Vacuolar protein-sortin 20.5 2.5E+02 0.0086 20.4 6.3 65 20-88 5-78 (79)
No 1
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=99.46 E-value=5.4e-13 Score=101.00 Aligned_cols=76 Identities=20% Similarity=0.139 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 021226 101 LDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIE 177 (315)
Q Consensus 101 ~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~Ie 177 (315)
...+|++|+.++++|.++...|+.+|+.....||.++ .++|.+|+.+||+||++|++|+++.++++|||+++..||
T Consensus 4 ~~~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~-~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~iE 79 (79)
T 4abm_A 4 EQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALE 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4679999999999999999999999999999999999 677999999999999999999999999999999999885
No 2
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=99.38 E-value=3.4e-13 Score=117.54 Aligned_cols=148 Identities=18% Similarity=0.225 Sum_probs=113.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021226 100 SLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKT----VALRHAKQLKLTKESREKCTSLLNRVEEVLSL 175 (315)
Q Consensus 100 e~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~----~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~ 175 (315)
........|+.+...|.+++..|+.+-.++....+.+.+.|++. .|+.++|.||. ..++.....+|+.+-.+
T Consensus 11 ~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~----~~~l~~~~a~l~~v~~~ 86 (179)
T 2gd5_A 11 LVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKA----VSKLYASKAHMNSVLMG 86 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999999999998899999999877 68888888875 56666788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-c-CCChHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHHHHHh
Q 021226 176 IENAESTKKVSEAIQIGAQAIKK-N-KISVEELQLCLEELEESIDLQKQAEKVIVPSYTGI-DDEDIEEEFKKLEQEVE 251 (315)
Q Consensus 176 Ie~a~~n~~v~~al~~g~~aLK~-~-~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~~~-De~ELe~EL~~Le~E~~ 251 (315)
++.+.++..|..+|+.|+++|+. + .+++++|..+|+++.++++..++|+++|+..+++. |+++.++|.+++...+.
T Consensus 87 lqt~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~kVl 165 (179)
T 2gd5_A 87 MKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRIL 165 (179)
T ss_dssp HHHHHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHH
Confidence 99999999999999999999999 4 77999999999999999999999999998766532 33344444444444433
No 3
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=99.27 E-value=2e-11 Score=96.87 Aligned_cols=54 Identities=15% Similarity=0.371 Sum_probs=49.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhCCCC---CCCCHHHHHHHHHHHHHHHhhc
Q 021226 200 KISVEELQLCLEELEESIDLQKQAEKVIVPSY---TGIDDEDIEEEFKKLEQEVECE 253 (315)
Q Consensus 200 ~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~---~~~De~ELe~EL~~Le~E~~~e 253 (315)
+|++|+|+++||+++|++++++||+++|++++ .++|++||++||++|+.+...+
T Consensus 2 ~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~l~~ 58 (104)
T 3um3_B 2 NMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDK 58 (104)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999865 5789999999999999886544
No 4
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=98.80 E-value=1.6e-08 Score=90.47 Aligned_cols=148 Identities=18% Similarity=0.255 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 021226 106 LHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKV 185 (315)
Q Consensus 106 ~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~Ie~a~~n~~v 185 (315)
-.|+.+...|.+++..|+.+=.+....+|.+.+.|++..|+.|-|.=-..-+...+.+..-.+|..|-.++..+.++..|
T Consensus 17 r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~~v 96 (218)
T 3frt_A 17 LKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRV 96 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888888899999999988776666665556666777788888899999999999999999
Q ss_pred HHHHHHHHHHHHh-c-CCChHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-----CCHHHHHHHHHHHHHHHhhc
Q 021226 186 SEAIQIGAQAIKK-N-KISVEELQLCLEELEESIDLQKQAEKVIVPSYTG-----IDDEDIEEEFKKLEQEVECE 253 (315)
Q Consensus 186 ~~al~~g~~aLK~-~-~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~~-----~De~ELe~EL~~Le~E~~~e 253 (315)
..+|..++++|+. + .+++..|..+|+++..++...+=+++++...+++ .+++|.++|.++...|....
T Consensus 97 ~~sM~~st~~M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~kVldEi~~~ 171 (218)
T 3frt_A 97 AGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAG 171 (218)
T ss_dssp --CCCCCHHHHHHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------CTTSTTTHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHhHh
Confidence 9999999999999 4 7899999999999999999877777777543331 23556666667666665543
No 5
>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}
Probab=98.65 E-value=3.4e-09 Score=74.60 Aligned_cols=50 Identities=24% Similarity=0.411 Sum_probs=44.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-----CCCHHHHHHHHHHHHHHH
Q 021226 201 ISVEELQLCLEELEESIDLQKQAEKVIVPSYT-----GIDDEDIEEEFKKLEQEV 250 (315)
Q Consensus 201 i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~-----~~De~ELe~EL~~Le~E~ 250 (315)
|++++|++++|+|.+.++..+||+++|+++|. ++|++||++||++|..|.
T Consensus 1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~pe~DdiDE~eL~aELdaL~de~ 55 (59)
T 2luh_B 1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDALAQED 55 (59)
T ss_dssp CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTTCCGGGTTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCCHHHHHHHHHHhhccc
Confidence 57899999999999999999999999987533 589999999999998874
No 6
>3htu_B Vacuolar protein-sorting-associated protein 20; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=97.48 E-value=0.00017 Score=46.77 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=31.3
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021226 96 SSISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRK 131 (315)
Q Consensus 96 ~~ITe~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~ 131 (315)
+.||+.|++|++||.++++|.++...++..++...+
T Consensus 2 skiT~qDrAIL~LK~QRDkL~qyqkri~~~~~rE~e 37 (39)
T 3htu_B 2 SRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERA 37 (39)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 589999999999999999999999999988876543
No 7
>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}
Probab=97.44 E-value=7.9e-05 Score=52.18 Aligned_cols=37 Identities=22% Similarity=0.483 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhCCCCC--CCCHHHHHHHHHHHHHHHhhc
Q 021226 217 IDLQKQAEKVIVPSYT--GIDDEDIEEEFKKLEQEVECE 253 (315)
Q Consensus 217 ~~~~~EI~~~L~~~~~--~~De~ELe~EL~~Le~E~~~e 253 (315)
|+..+||+++|++++. ++||+||++||++|++|...+
T Consensus 1 ~e~a~EIqealsr~~g~~diDEdEL~aELe~LeqE~~~~ 39 (57)
T 2lxm_B 1 MEDANEINEALSRSYGTPELDEDDLEAELDALGDELLAD 39 (57)
T ss_dssp ---------------CCCCCCHHHHHHHHHHHHHHHHHC
T ss_pred CchHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHhhc
Confidence 5678999999988543 799999999999999887543
No 8
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=87.43 E-value=0.65 Score=39.53 Aligned_cols=139 Identities=15% Similarity=0.145 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 021226 101 LDYDVLHLIWTVEKLQLQLDIIDRHYEMS---------RKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEE 171 (315)
Q Consensus 101 ~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~---------~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~ 171 (315)
...++-+|...+.+|+++...+..+|..+ +-.|+.+++..+ . ...+-..-.++.+.-..|++
T Consensus 19 L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk--~-------~~~l~~~~a~l~~v~~~lqt 89 (179)
T 2gd5_A 19 IRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRK--A-------VSKLYASKAHMNSVLMGMKN 89 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555554322 224444444331 1 22222244444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHHHH
Q 021226 172 VLSLIENAESTKKVSEAIQIGAQAIKKNKI--SVEELQLCLEELEESIDLQKQAEKVIVPS-YTGIDDEDIEEEFKKLEQ 248 (315)
Q Consensus 172 ~l~~Ie~a~~n~~v~~al~~g~~aLK~~~i--~~e~Ve~~mddi~E~~~~~~EI~~~L~~~-~~~~De~ELe~EL~~Le~ 248 (315)
+......+..=..+..+|+..++.++--+| ..+++++-++.+ -..++-+++++... ..+.+++|.++|+++...
T Consensus 90 ~~~~~~v~~am~~~~~~M~~~n~~m~l~~i~~~M~e~~~e~~~~---~~~~E~m~d~~~~~~~~~~~eee~d~~v~kVl~ 166 (179)
T 2gd5_A 90 QLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKA---GIIEEMLEDTFESMDDQEEMEEEAEMEIDRILF 166 (179)
T ss_dssp HHHHHHHTSSCCCCSHHHHTTTSSTTSSSCCHHHHHHHHHHHHH---TSCC-------------------CTTHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHH
Confidence 555555555555556666666666654333 344444444443 11122223333321 113345556666666555
Q ss_pred HHh
Q 021226 249 EVE 251 (315)
Q Consensus 249 E~~ 251 (315)
|..
T Consensus 167 E~~ 169 (179)
T 2gd5_A 167 EIT 169 (179)
T ss_dssp CC-
T ss_pred Hhh
Confidence 544
No 9
>3uly_B Charged multivesicular BODY protein 5; beta-hairpin, ESCRT-III, CHMPS, membrane protein-transport P complex, BROX; 2.60A {Homo sapiens} PDB: 3um1_B
Probab=82.77 E-value=0.78 Score=33.08 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHHHHHHHHhhc
Q 021226 233 GIDDEDIEEEFKKLEQEVECE 253 (315)
Q Consensus 233 ~~De~ELe~EL~~Le~E~~~e 253 (315)
++||+||++||++|..|+..+
T Consensus 7 diDE~eL~aELdaL~~e~~~~ 27 (69)
T 3uly_B 7 ELDEDDLEAELDALGDELLAD 27 (69)
T ss_pred CCCHHHHHHHHHHHHHHHhcc
Confidence 699999999999999887543
No 10
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=77.75 E-value=19 Score=26.69 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 021226 106 LHLIWTVEKLQLQLDIIDRHYEMSRKS-ALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEV 172 (315)
Q Consensus 106 ~~Lk~~~~~L~~qi~~Le~~i~~~~~~-ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~ 172 (315)
++.+..++.|..+|..|+.+|..+... +...+-..+......++.+...++..|+.++.....|+.+
T Consensus 18 ykeqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~~ 85 (89)
T 2lw1_A 18 YKLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEAL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567778888999999999999888753 3222323566777788888899999999998888777655
No 11
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=76.86 E-value=17 Score=32.28 Aligned_cols=32 Identities=22% Similarity=0.135 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021226 100 SLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRK 131 (315)
Q Consensus 100 e~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~ 131 (315)
..|..|..|...+..|...+..|+.++..+..
T Consensus 15 ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~ 46 (256)
T 3na7_A 15 HLDKEIDSLEPLIREKRKDLDKALNDKEAKNK 46 (256)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666665554
No 12
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=62.55 E-value=9.7 Score=29.68 Aligned_cols=52 Identities=17% Similarity=0.271 Sum_probs=42.0
Q ss_pred ccCCcEeehHhHHHHHHHHHHHHhhccccccccccHhhHHHhhCCCchhH-HHHHHhh
Q 021226 11 LLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEAS-AVLSFLT 67 (315)
Q Consensus 11 l~~~~~V~~~~l~e~a~~i~~~~~~~~~~s~~v~s~~~F~~~~~~~~d~~-ilL~yL~ 67 (315)
+.++-|++...+.+.+..+...+... .-+|..+|.+.+|.+.-+- .+|.||-
T Consensus 53 i~~~~~~~~~~~~~~~~~l~~~~~~~-----~~it~ae~Rd~lg~sRK~ai~lLE~~D 105 (121)
T 2pjp_A 53 IVKDRYYRNDRIVEFANMIRDLDQEC-----GSTCAADFRDRLGVGRKLAIQILEYFD 105 (121)
T ss_dssp EETTEEEEHHHHHHHHHHHHHHHHHH-----SSEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred ecCCceECHHHHHHHHHHHHHHHHHC-----CCccHHHHHHHHCCcHHHHHHHHHHHh
Confidence 45777999999999999998887652 4599999999998766654 4888883
No 13
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=56.12 E-value=33 Score=29.99 Aligned_cols=89 Identities=12% Similarity=0.096 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHH
Q 021226 105 VLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESRE---KCTSLLNRVEEVLSLIENAES 181 (315)
Q Consensus 105 I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~---~~~~~l~nLe~~l~~Ie~a~~ 181 (315)
+-+|-..+..|+++...+..+|.++- +.--..+-|..|+.+.|.||...+.+. ++.+--.+|.++.....-+.+
T Consensus 23 ~R~LdR~~~kle~eEkk~~~~IKkaa---kkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~~v~~s 99 (218)
T 3frt_A 23 MRVVDRQIRDIQREEEKVKRSVKDAA---KKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGS 99 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443322 222223345666666666666554432 344444455555554444444
Q ss_pred HHHHHHHHHHHHHHH
Q 021226 182 TKKVSEAIQIGAQAI 196 (315)
Q Consensus 182 n~~v~~al~~g~~aL 196 (315)
=..+..+|+..++.+
T Consensus 100 M~~st~~M~~~n~~m 114 (218)
T 3frt_A 100 LQKSTEVMKAMQSLV 114 (218)
T ss_dssp CCCCHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcC
Confidence 455556666655555
No 14
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=48.31 E-value=32 Score=30.35 Aligned_cols=51 Identities=12% Similarity=0.195 Sum_probs=41.9
Q ss_pred ccCCcEeehHhHHHHHHHHHHHHhhccccccccccHhhHHHhhCCCchhHH-HHHHhh
Q 021226 11 LLKDHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGGQDEASA-VLSFLT 67 (315)
Q Consensus 11 l~~~~~V~~~~l~e~a~~i~~~~~~~~~~s~~v~s~~~F~~~~~~~~d~~i-lL~yL~ 67 (315)
+.++-|++...+.+....+...+ .. .-+|..+|++.+|.+.-+-+ +|-||-
T Consensus 190 l~~~~~~~~~~~~~~~~~l~~~~-~~-----~~it~a~~Rd~lg~SRK~aIplLE~~D 241 (258)
T 1lva_A 190 INDEFYWHRQALGEAREVIKNLA-ST-----GPFGLAEARDALGSSRKYVLPLLEYLD 241 (258)
T ss_dssp SSSSBEEEHHHHHHHHHHHHHHH-TT-----SCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ecCCeEEcHHHHHHHHHHHHHHH-hc-----CCcCHHHHHHHhCCcHHHHHHHHHHHh
Confidence 45778999999999999998877 53 45999999999998776654 888983
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=42.49 E-value=3.1e+02 Score=29.48 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 021226 112 VEKLQLQLDIIDRHYE 127 (315)
Q Consensus 112 ~~~L~~qi~~Le~~i~ 127 (315)
...|+.++..|+.+++
T Consensus 923 ~~~LE~kl~eLq~rL~ 938 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKID 938 (1080)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 16
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=38.20 E-value=1.1e+02 Score=22.13 Aligned_cols=70 Identities=16% Similarity=0.196 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHHHHHHHH---HHhHHHHHHHHHHHHHHHHH
Q 021226 107 HLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQL-KLTKESREK---CTSLLNRVEEVLSLIENAES 181 (315)
Q Consensus 107 ~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~K-K~~ek~L~~---~~~~l~nLe~~l~~Ie~a~~ 181 (315)
..+.++..|..+++.|+.+...+....- .....|+.++.+. +.+-..|-+ ..+++.++...+.+||+-..
T Consensus 3 ~~~~AI~~Lr~~~d~L~kkq~~L~~~i~-----~e~~~Ak~~~~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~ 76 (79)
T 4abm_A 3 MEQEAIQRLRDTEEMLSKKQEFLEKKIE-----QELTAAKKHGTKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3577899999999999999888876543 3455667666432 233333333 35566666777777665443
No 17
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=37.77 E-value=1.6e+02 Score=23.60 Aligned_cols=68 Identities=13% Similarity=0.124 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHH
Q 021226 153 KLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKN--KISVEELQLCLEELEESIDLQ 220 (315)
Q Consensus 153 K~~ek~L~~~~~~l~nLe~~l~~Ie~a~~n~~v~~al~~g~~aLK~~--~i~~e~Ve~~mddi~E~~~~~ 220 (315)
.+++--++.....+..++..+..++..-.+...++++--+.-.||-. -++...|.++--.+++.++..
T Consensus 11 ell~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~~l 80 (144)
T 3kyj_A 11 EIWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIGLV 80 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHHHH
Confidence 45677788889999999999999998888999999999999999973 336666666666665555443
No 18
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=37.70 E-value=64 Score=20.86 Aligned_cols=27 Identities=11% Similarity=0.088 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021226 105 VLHLIWTVEKLQLQLDIIDRHYEMSRK 131 (315)
Q Consensus 105 I~~Lk~~~~~L~~qi~~Le~~i~~~~~ 131 (315)
+..+....+.|++||..|+.+++.+..
T Consensus 11 vsel~~r~e~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 11 ISDLNERSEDFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 456777888899999999998887765
No 19
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=35.79 E-value=1.7e+02 Score=28.07 Aligned_cols=67 Identities=4% Similarity=-0.051 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 021226 103 YDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEE 171 (315)
Q Consensus 103 ~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~ 171 (315)
-.|+.|-.....+..+++.|..+...+.+......++|. .+..++.+-+.+-..+..+...+..++.
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 97 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGE--PVDELLAKSREIVKRIGELENEVEELKK 97 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC--CTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888888888888888877776665545442 2233333444444444444444444333
No 20
>3cuq_C Vacuolar protein-sorting-associated protein 25; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_C
Probab=35.61 E-value=64 Score=27.18 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=45.6
Q ss_pred CcEeehHhHHHHHHHHHHHHhhccccccccccHhhHHHhhCC------CchhH---HHHHHhhhcCccceeeeecCCcee
Q 021226 14 DHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGG------QDEAS---AVLSFLTGRGKALYLSISKNEFTE 84 (315)
Q Consensus 14 ~~~V~~~~l~e~a~~i~~~~~~~~~~s~~v~s~~~F~~~~~~------~~d~~---ilL~yL~~~~~~~~v~v~~~~~~~ 84 (315)
.-+|.+-.+++-|+.|++.+.++-. .+.|+|+-++..--.. .-|-+ -.|..|...||+ .++- ++.-.
T Consensus 96 ~~~I~Wrt~~eWa~~iy~wv~~~G~-~~sV~TlyEL~~Gd~t~~~ef~gld~~vL~kaL~~L~~~gKa-ql~~--~~~~~ 171 (176)
T 3cuq_C 96 SFLIMWRRPEEWGKLIYQWVSRSGQ-NNSVFTLYELTNGEDTEDEEFHGLDEATLLRALQALQQEHKA-EIIT--VSDGR 171 (176)
T ss_dssp EEEECSSCHHHHHHHHHHHHHTTTC-CSCEEEHHHHHHCTTTTTSTTTTCCHHHHHHHHHHHHHHTSE-EECC--TTTSC
T ss_pred EEEEEeCCHHHHHHHHHHHHHhcCC-cCcEEEEeeeccCCCCCCCcccCCCHHHHHHHHHHHHHcCCe-EEee--cCCCC
Confidence 4599999999999999999876432 3679998776643111 12323 355667766776 3332 22237
Q ss_pred eEEe
Q 021226 85 GVKV 88 (315)
Q Consensus 85 ~IKf 88 (315)
+|||
T Consensus 172 GVKF 175 (176)
T 3cuq_C 172 GVKF 175 (176)
T ss_dssp EEEE
T ss_pred ceee
Confidence 8887
No 21
>1xb4_A VPS25, hypothetical 23.6 kDa protein in YUH1-URA8 intergenic region; winged helix, unknown function; 3.10A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_B 1u5t_C
Probab=35.23 E-value=61 Score=27.97 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=45.5
Q ss_pred CcEeehHhHHHHHHHHHHHHhhccccccccccHhhHHHhhCC------Cch---hHHHHHHhhhcCccceeeeecCCcee
Q 021226 14 DHVILMEVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGG------QDE---ASAVLSFLTGRGKALYLSISKNEFTE 84 (315)
Q Consensus 14 ~~~V~~~~l~e~a~~i~~~~~~~~~~s~~v~s~~~F~~~~~~------~~d---~~ilL~yL~~~~~~~~v~v~~~~~~~ 84 (315)
.-||.+-.+++-|+.|++.+.++- ....|+|+-++..--.. .-| +.-.|..|...||+ .++- ++.-.
T Consensus 120 ~~~I~Wrtp~EWa~~I~~Wv~~tG-~~~sV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~GKa-qi~~--~~~~~ 195 (202)
T 1xb4_A 120 RYFILWKSLDSWASLILQWFEDSG-KLNQVITLYELSEGDETVNWEFHRMPESLLYYCLKPLCDRNRA-TMLK--DENDK 195 (202)
T ss_dssp EEEECSSCHHHHHHHHHHHHHTTS-CTTSCEEHHHHC--CCSCCSTTTTCCHHHHHHHHHHHHGGGCC-EEEE--CTTSC
T ss_pred eEEEEeCCHHHHHHHHHHHHHhcC-CcCcEEEeehcccCCCCCCccccCCCHHHHHHHHHHHHHcCCE-EEee--cCCCC
Confidence 469999999999999999987643 23678888766542111 112 22366678777776 3332 22227
Q ss_pred eEEee
Q 021226 85 GVKVS 89 (315)
Q Consensus 85 ~IKf~ 89 (315)
+|||-
T Consensus 196 GVKF~ 200 (202)
T 1xb4_A 196 VIAIK 200 (202)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 88883
No 22
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=35.05 E-value=3.3e+02 Score=26.93 Aligned_cols=24 Identities=17% Similarity=0.081 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 021226 101 LDYDVLHLIWTVEKLQLQLDIIDR 124 (315)
Q Consensus 101 ~D~~I~~Lk~~~~~L~~qi~~Le~ 124 (315)
.|+.=..|+..++.|..+++.|++
T Consensus 55 LdkqErDltkrINELKnqLEdlsK 78 (562)
T 3ghg_A 55 IDEVNQDFTNRINKLKNSLFEYQK 78 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHhhcCcHHHHHHHHHHHHHHHHh
Confidence 444455566666666666655533
No 23
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=35.04 E-value=19 Score=23.37 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=14.2
Q ss_pred ChHHHHHHHHHHHHHHHHH
Q 021226 202 SVEELQLCLEELEESIDLQ 220 (315)
Q Consensus 202 ~~e~Ve~~mddi~E~~~~~ 220 (315)
..+.+|+++|+|.+.++..
T Consensus 12 ~~~~~D~lLDeId~vLE~N 30 (44)
T 3m91_B 12 LTEETDDLLDEIDDVLEEN 30 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 4567888888888777654
No 24
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=34.89 E-value=1.2e+02 Score=23.99 Aligned_cols=52 Identities=4% Similarity=-0.057 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHH
Q 021226 115 LQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLL 166 (315)
Q Consensus 115 L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l 166 (315)
+...|+.|..+++.|+..--.+...|+......+.+.+--+++.++++-...
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q 59 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVH 59 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888655566778888888888888777777777665543
No 25
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=34.19 E-value=2.7e+02 Score=27.12 Aligned_cols=35 Identities=9% Similarity=0.037 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021226 104 DVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLH 138 (315)
Q Consensus 104 ~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~ 138 (315)
.|+.|-.....+..+++.|..+...+.+....+.+
T Consensus 38 ~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 38 AIIEADKKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46677777777777777777777666655444333
No 26
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=33.12 E-value=2.6e+02 Score=27.21 Aligned_cols=38 Identities=13% Similarity=0.178 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021226 101 LDYDVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHS 139 (315)
Q Consensus 101 ~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~ 139 (315)
+| .|+.|-.....+..+++.|..+...+.+...+..++
T Consensus 69 ~~-~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~ 106 (501)
T 1wle_A 69 LP-GIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVN 106 (501)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44 677788888888888888887777777665544443
No 27
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=31.58 E-value=1.6e+02 Score=21.99 Aligned_cols=65 Identities=11% Similarity=0.170 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHH
Q 021226 153 KLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKN--KISVEELQLCLEELEESI 217 (315)
Q Consensus 153 K~~ek~L~~~~~~l~nLe~~l~~Ie~a~~n~~v~~al~~g~~aLK~~--~i~~e~Ve~~mddi~E~~ 217 (315)
.+++.-++.....+..++..+..++....+...++++-.+.-.||-. -++...+..+--.+++..
T Consensus 6 el~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l 72 (113)
T 2lch_A 6 EYIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLV 72 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHH
Confidence 45667778888899999999999998888889999999999999984 336666666655554443
No 28
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=30.71 E-value=2.8e+02 Score=27.00 Aligned_cols=67 Identities=9% Similarity=0.059 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 021226 104 DVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEV 172 (315)
Q Consensus 104 ~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~ 172 (315)
.|+.|-.....+..+++.|..+...+.+....+.++|. .|-.++.+-+.+-..+..+...+..++.-
T Consensus 34 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~--~~~~l~~~~~~l~~~i~~le~~~~~~~~~ 100 (485)
T 3qne_A 34 EIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKE--DAKDLIAEKEKLSNEKKEIIEKEAEADKN 100 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777888888888888887777766555444443 12233333444444444444444444433
No 29
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=30.71 E-value=49 Score=21.31 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 021226 100 SLDYDVLHLIWTVEKLQLQLDIID 123 (315)
Q Consensus 100 e~D~~I~~Lk~~~~~L~~qi~~Le 123 (315)
.+|+-|......+..|++++..|+
T Consensus 13 kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 13 RVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 30
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=29.35 E-value=1.7e+02 Score=21.46 Aligned_cols=65 Identities=9% Similarity=0.112 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHH
Q 021226 153 KLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKN--KISVEELQLCLEELEESI 217 (315)
Q Consensus 153 K~~ek~L~~~~~~l~nLe~~l~~Ie~a~~n~~v~~al~~g~~aLK~~--~i~~e~Ve~~mddi~E~~ 217 (315)
.+++..++.....+..|+..+..++....+...++++....-.||.. -++...+..+--.+++..
T Consensus 5 ~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l 71 (105)
T 1tqg_A 5 EYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENIL 71 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHH
Confidence 45667778888888889999988888777888889999999999983 346666666665555443
No 31
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=29.11 E-value=2.4e+02 Score=23.16 Aligned_cols=49 Identities=8% Similarity=0.083 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 021226 121 IIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRV 169 (315)
Q Consensus 121 ~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nL 169 (315)
.+..++..+......++..++-..|...+++-+.+.+..+.+......|
T Consensus 124 ~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~f~~kl~~~i~~~~~~l 172 (174)
T 3hho_A 124 KVTAMQRHYLAQLQGQLAQSEWLAAADQIRKLKFIAKLKNEVERVEDQL 172 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555566677777788899999999999999999988877776655433
No 32
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=28.85 E-value=2.6e+02 Score=26.41 Aligned_cols=64 Identities=16% Similarity=0.084 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 021226 104 DVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEE 171 (315)
Q Consensus 104 ~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~ 171 (315)
.|+.|-.....+..+++.|..+...+.+.... +.+..+-.++.+-+.+-..+..+...+..++.
T Consensus 29 ~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (421)
T 1ses_A 29 ALLALDREVQELKKRLQEVQTERNQVAKRVPK----APPEEKEALIARGKALGEEAKRLEEALREKEA 92 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888888887777765432 44444444444444444445444444444443
No 33
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=28.21 E-value=2.2e+02 Score=22.34 Aligned_cols=67 Identities=10% Similarity=0.122 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHH
Q 021226 153 KLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKN--KISVEELQLCLEELEESIDL 219 (315)
Q Consensus 153 K~~ek~L~~~~~~l~nLe~~l~~Ie~a~~n~~v~~al~~g~~aLK~~--~i~~e~Ve~~mddi~E~~~~ 219 (315)
.+++..++.....+..|+..+..++....+...++++..+.-.||.. -++...+..+--.+++..+.
T Consensus 4 ell~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l~~ 72 (139)
T 2ld6_A 4 EYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDK 72 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 35566778888888999999999988877888899999999999984 55888887777777665543
No 34
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=28.03 E-value=4.4e+02 Score=25.85 Aligned_cols=88 Identities=18% Similarity=0.216 Sum_probs=57.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHh--c-CCChHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 021226 162 CTSLLNRVEEVLSLIENAESTKKVSEAIQI-------GAQAIKK--N-KISVEELQLCLEELEESIDLQKQAEKVIVPSY 231 (315)
Q Consensus 162 ~~~~l~nLe~~l~~Ie~a~~n~~v~~al~~-------g~~aLK~--~-~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~ 231 (315)
....+.++..++.-|..+.+..++...|.. -.++|=. + .++-.+++++..+.++.....+++..+|+...
T Consensus 402 l~~a~~~id~vI~iIr~s~~~~~a~~~L~~~f~lse~qa~~IL~m~L~rLT~~e~~kl~~E~~~l~~ei~~l~~iL~~~~ 481 (514)
T 2inr_A 402 LIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 481 (514)
T ss_dssp HHHHHHSHHHHHHHHHHCCSHHHHHHHHHTTSSCCHHHHHHHHTCCGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHhchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 333456677777777776665555555543 1233333 2 67888899999999999999999999996510
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q 021226 232 TGIDDEDIEEEFKKLEQEVE 251 (315)
Q Consensus 232 ~~~De~ELe~EL~~Le~E~~ 251 (315)
.=.+=+-+||.++.....
T Consensus 482 --~~~~~i~~el~~i~~~yg 499 (514)
T 2inr_A 482 --ALLNVIKEELNEIKKKFK 499 (514)
T ss_dssp --HHHHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHHHHHcC
Confidence 002446777777766544
No 35
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=27.84 E-value=2.9e+02 Score=25.92 Aligned_cols=9 Identities=33% Similarity=0.534 Sum_probs=6.2
Q ss_pred HHHHHHHHH
Q 021226 23 KDKADEVIK 31 (315)
Q Consensus 23 ~e~a~~i~~ 31 (315)
.+.|..|++
T Consensus 287 ~eaA~~Fi~ 295 (471)
T 3mq9_A 287 KELAKEFLE 295 (471)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 456777775
No 36
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=26.48 E-value=2.1e+02 Score=21.69 Aligned_cols=66 Identities=17% Similarity=0.159 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 021226 107 HLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKKVS 186 (315)
Q Consensus 107 ~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~Ie~a~~n~~v~ 186 (315)
.++..+..|+.+....+.++..+.... -.--.+|..+|+...++..-+..|...|+ -..|.+|.
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l------------~eE~~~R~~aE~~~~~ie~ElEeLTasLF----eEAN~MVa 72 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDI------------AKENELRTKAEEEADKLNKEVEDLTASLF----DEANNMVA 72 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 455555555555555555555444311 12223444555555555555555555554 25566776
Q ss_pred HH
Q 021226 187 EA 188 (315)
Q Consensus 187 ~a 188 (315)
.+
T Consensus 73 ~a 74 (97)
T 2eqb_B 73 DA 74 (97)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 37
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=26.02 E-value=3.7e+02 Score=26.08 Aligned_cols=45 Identities=7% Similarity=0.007 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 021226 140 GNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSLIENAESTKK 184 (315)
Q Consensus 140 ~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~Ie~a~~n~~ 184 (315)
|+.+.-+..|++|..-...+++....-..-..++..++..+....
T Consensus 13 ~n~~~v~~~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn 57 (485)
T 3qne_A 13 GDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLN 57 (485)
T ss_dssp CCHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777764333355555555555555555555554444
No 38
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=24.33 E-value=2.9e+02 Score=22.61 Aligned_cols=61 Identities=13% Similarity=0.273 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHH-----HH----HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhH
Q 021226 105 VLHLIWTVEKLQLQ-----LD----IIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSL 165 (315)
Q Consensus 105 I~~Lk~~~~~L~~q-----i~----~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~ 165 (315)
++.++..++..... +. .+..++..+......++..++-..|..++++-+.+.+..+.+...
T Consensus 95 ~me~rE~lee~~~~~d~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~kl~y~~kl~~~i~~~ 164 (171)
T 1fpo_A 95 QLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNETWDAAADTCRKLRFLDKLRSSAEQL 164 (171)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544321 33 344445556666667888899999999999988887776655544
No 39
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=24.27 E-value=2.6e+02 Score=23.21 Aligned_cols=44 Identities=7% Similarity=-0.036 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Q 021226 121 IIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTS 164 (315)
Q Consensus 121 ~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~ 164 (315)
.+..++..+......++..++-..|...+++-+.+.+..+.+-.
T Consensus 129 ~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~y~~kl~~~ik~ 172 (181)
T 3uo3_A 129 QNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLAKAFKD 172 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777777777888999999999999999999888776543
No 40
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=23.71 E-value=2.4e+02 Score=21.26 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=13.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Q 021226 156 KESREKCTSLLNRVEEVLSLIENA 179 (315)
Q Consensus 156 ek~L~~~~~~l~nLe~~l~~Ie~a 179 (315)
.+.|+++...+..++..+..++.+
T Consensus 68 ~~kid~L~~el~K~q~~L~e~e~~ 91 (98)
T 2ke4_A 68 LSNIERLKLEVQKYEAWLAEAESR 91 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445555556666666666655543
No 41
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=22.81 E-value=1.2e+02 Score=26.00 Aligned_cols=45 Identities=20% Similarity=0.163 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021226 154 LTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKK 198 (315)
Q Consensus 154 ~~ek~L~~~~~~l~nLe~~l~~Ie~a~~n~~v~~al~~g~~aLK~ 198 (315)
+++--++.....|.++++.+..++..-.+...++++--+..+||.
T Consensus 8 ~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG 52 (225)
T 2lp4_A 8 FYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKG 52 (225)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh
Confidence 566778888888999999999998888888888888888888886
No 42
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=22.23 E-value=1.3e+02 Score=17.67 Aligned_cols=26 Identities=8% Similarity=0.123 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021226 105 VLHLIWTVEKLQLQLDIIDRHYEMSR 130 (315)
Q Consensus 105 I~~Lk~~~~~L~~qi~~Le~~i~~~~ 130 (315)
|..||+.+..|.+.|..|.-+|..++
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777666665443
No 43
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=21.92 E-value=6.7e+02 Score=26.92 Aligned_cols=34 Identities=9% Similarity=0.068 Sum_probs=17.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021226 98 ISSLDYDVLHLIWTVEKLQLQLDIIDRHYEMSRK 131 (315)
Q Consensus 98 ITe~D~~I~~Lk~~~~~L~~qi~~Le~~i~~~~~ 131 (315)
+.+....+-.++..+..++..+..++.++..+..
T Consensus 859 l~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~ 892 (1184)
T 1i84_S 859 MQAKDEELQRTKERQQKAEAELKELEQKHTQLCE 892 (1184)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555544443
No 44
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=21.86 E-value=1.8e+02 Score=23.14 Aligned_cols=66 Identities=20% Similarity=0.173 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHH
Q 021226 153 KLTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKN--KISVEELQLCLEELEESID 218 (315)
Q Consensus 153 K~~ek~L~~~~~~l~nLe~~l~~Ie~a~~n~~v~~al~~g~~aLK~~--~i~~e~Ve~~mddi~E~~~ 218 (315)
.+++..++.....+..|+..+..++....+...++++..+.-.||-. -++...+..+--.+++..+
T Consensus 7 ell~~Fl~Ea~e~L~~le~~L~~le~~~~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~ 74 (146)
T 1i5n_A 7 DFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLD 74 (146)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHH
Confidence 46677788888888889999888887777888889999999999973 4466777666665555443
No 45
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=20.48 E-value=2.5e+02 Score=20.35 Aligned_cols=65 Identities=15% Similarity=0.118 Sum_probs=38.3
Q ss_pred HhHHHHHHHHHHHHhhccccccccccHhhHHHhhCC------CchhH---HHHHHhhhcCccceeeeecCCceeeEEe
Q 021226 20 EVLKDKADEVIKLLSESHWTSSCIITMKKFQDKCGG------QDEAS---AVLSFLTGRGKALYLSISKNEFTEGVKV 88 (315)
Q Consensus 20 ~~l~e~a~~i~~~~~~~~~~s~~v~s~~~F~~~~~~------~~d~~---ilL~yL~~~~~~~~v~v~~~~~~~~IKf 88 (315)
..+++-|..|++...++-. .+.|+|+-++..--.+ .-|.. -.|..|...+|+ .++-.+ .-++|||
T Consensus 5 rspeeWa~~Iy~Wv~~~G~-~~sV~TlyEL~~Gd~t~~~ef~gmd~~~L~kaL~~L~k~gkA-~i~~~~--~~~GVKF 78 (79)
T 3htu_A 5 RRPEEWGKLIYQWVSRSGQ-NNSVFTLYELTNGEDTEDEEFHGLDEATLLRALQALQQEHKA-EIITVS--DGRGVKF 78 (79)
T ss_dssp CCHHHHHHHHHHHHHTTCC-SCSEECHHHHHHSSTTTTSTTTTCCHHHHHHHHHHHHHTTSE-EEECCT--TSCEEEE
T ss_pred CCHHHHHHHHHHHHHHcCC-CCceEEEeeeccCCCCCCCcccCCCHHHHHHHHHHHHHcCCE-EEEecC--CCceeee
Confidence 3467889999998875322 3668888777642111 11222 356678777777 433222 2258888
Done!