Query 021226
Match_columns 315
No_of_seqs 198 out of 757
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 14:35:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021226.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021226hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fpoa2 a.23.1.1 (A:77-171) HS 73.2 13 0.00091 26.2 9.1 50 119-168 42-91 (95)
2 d1tqga_ a.24.10.3 (A:) Chemota 54.1 22 0.0016 24.8 7.3 66 154-219 6-73 (105)
3 d1i5na_ a.24.10.3 (A:) Chemota 40.4 20 0.0015 25.9 5.2 68 154-221 5-74 (128)
4 d1ivsa1 a.2.7.3 (A:797-862) Va 36.9 47 0.0035 21.2 6.6 21 110-130 4-24 (66)
5 d1gqea_ e.38.1.1 (A:) Polypept 30.4 1.6E+02 0.011 25.2 14.3 73 99-172 2-77 (362)
6 d1seta1 a.2.7.1 (A:1-110) Sery 30.0 83 0.006 21.9 11.1 68 104-175 29-96 (110)
7 d1b3qa1 a.30.2.1 (A:293-354) H 28.4 58 0.0042 20.7 5.3 44 200-247 5-48 (62)
8 d1ab4a_ e.11.1.1 (A:) DNA Gyra 25.3 1.5E+02 0.011 26.3 9.7 49 200-250 436-484 (493)
9 d1ivsa1 a.2.7.3 (A:797-862) Va 24.8 43 0.0031 21.4 4.1 27 101-127 2-28 (66)
10 d1lvaa4 a.4.5.35 (A:575-634) C 21.2 69 0.005 20.5 4.5 25 43-67 18-43 (60)
No 1
>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal oligomerisation domain {Escherichia coli [TaxId: 562]}
Probab=73.18 E-value=13 Score=26.17 Aligned_cols=50 Identities=10% Similarity=0.258 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 021226 119 LDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNR 168 (315)
Q Consensus 119 i~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~n 168 (315)
...+..++..+......++..++-..|..++++-|.+.+.+..+......
T Consensus 42 ~~ei~~~~~~~~~~l~~~~~~~d~~~A~~~~~kLkF~~kl~~ei~~~e~~ 91 (95)
T d1fpoa2 42 IKRVKKMFDTRHQLMVEQLDNETWDAAADTCRKLRFLDKLRSSAEQLEEK 91 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34456666777777788889999999999999999999888877655443
No 2
>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Thermotoga maritima [TaxId: 2336]}
Probab=54.12 E-value=22 Score=24.77 Aligned_cols=66 Identities=11% Similarity=0.096 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-ChHHHHHHHHHHHHHHHH
Q 021226 154 LTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKN-KI-SVEELQLCLEELEESIDL 219 (315)
Q Consensus 154 ~~ek~L~~~~~~l~nLe~~l~~Ie~a~~n~~v~~al~~g~~aLK~~-~i-~~e~Ve~~mddi~E~~~~ 219 (315)
+++--++.....+..++..+..++..-.+...++++....-+||.. ++ +++.+..+.-.+++..+.
T Consensus 6 ~l~~Fl~Ea~e~l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~a~~~gl~~i~~lah~lE~~l~~ 73 (105)
T d1tqga_ 6 YLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDK 73 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCchhhcCHHHHHHHHHHHHHHHHH
Confidence 4566778888899999999999998888899999999999999984 33 777777777766665443
No 3
>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}
Probab=40.36 E-value=20 Score=25.88 Aligned_cols=68 Identities=19% Similarity=0.164 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHH
Q 021226 154 LTKESREKCTSLLNRVEEVLSLIENAESTKKVSEAIQIGAQAIKKN--KISVEELQLCLEELEESIDLQK 221 (315)
Q Consensus 154 ~~ek~L~~~~~~l~nLe~~l~~Ie~a~~n~~v~~al~~g~~aLK~~--~i~~e~Ve~~mddi~E~~~~~~ 221 (315)
+++--++.....+.+++..+..++....+...++.+-.+..+||.. -+++..|.++--.+++.++...
T Consensus 5 ~~~~F~~Ea~e~l~~l~~~l~~le~~~~~~~~~~~l~R~~HTLKG~a~~~gl~~i~~lah~lE~~l~~lr 74 (128)
T d1i5na_ 5 FYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEAR 74 (128)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhHHhhcChHHHHHHHHHHHHHHHHHH
Confidence 5677888889999999999999988888899999999999999984 4477777777777766665543
No 4
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=36.92 E-value=47 Score=21.21 Aligned_cols=21 Identities=14% Similarity=-0.087 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021226 110 WTVEKLQLQLDIIDRHYEMSR 130 (315)
Q Consensus 110 ~~~~~L~~qi~~Le~~i~~~~ 130 (315)
..+.+|++.+..++..+..+.
T Consensus 4 ~E~~RL~K~l~kl~~~i~~~~ 24 (66)
T d1ivsa1 4 EWRRRQEKRLKELLALAERSQ 24 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444
No 5
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=30.38 E-value=1.6e+02 Score=25.25 Aligned_cols=73 Identities=11% Similarity=0.055 Sum_probs=43.7
Q ss_pred ChhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 021226 99 SSLDYDVLHLIWTVEKLQLQ--LDIIDRHYEMSRKSAL-ASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEV 172 (315)
Q Consensus 99 Te~D~~I~~Lk~~~~~L~~q--i~~Le~~i~~~~~~ak-~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~ 172 (315)
++.-..|-.|+..+..|... ++.+..+++.+....- ..+ -++...|..++|.++.++..++........++.+
T Consensus 2 ~~l~~~i~eL~~rl~~Lr~~fDld~kk~Rl~ELE~~lsdP~f-W~D~~kAqkl~KE~s~L~~iVe~~~~l~~~leDl 77 (362)
T d1gqea_ 2 NPVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDV-WNEPERAQALGKERSSLEAVVDTLDQMKQGLEDV 77 (362)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGG-GGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCChh-hhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666554 2455555555554221 111 1378899999999999998887665554444443
No 6
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=30.00 E-value=83 Score=21.90 Aligned_cols=68 Identities=16% Similarity=0.092 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021226 104 DVLHLIWTVEKLQLQLDIIDRHYEMSRKSALASLHSGNKTVALRHAKQLKLTKESREKCTSLLNRVEEVLSL 175 (315)
Q Consensus 104 ~I~~Lk~~~~~L~~qi~~Le~~i~~~~~~ak~~~~~~~K~~Al~~Lr~KK~~ek~L~~~~~~l~nLe~~l~~ 175 (315)
.|+.|-..+..+..+++.|..+...+.+.. ..+.+..+-..+..-+.+-+.+..+...+..++.-+..
T Consensus 29 ~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i----~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~ 96 (110)
T d1seta1 29 ALLALDREVQELKKRLQEVQTERNQVAKRV----PKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEA 96 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHG----GGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888888888888888888876665543 34555555555555566666666666666555554443
No 7
>d1b3qa1 a.30.2.1 (A:293-354) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]}
Probab=28.43 E-value=58 Score=20.69 Aligned_cols=44 Identities=11% Similarity=0.289 Sum_probs=34.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH
Q 021226 200 KISVEELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLE 247 (315)
Q Consensus 200 ~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~~~De~ELe~EL~~Le 247 (315)
.++++++|.+|+=+.|..-....+...... .++.++.+.+..|.
T Consensus 5 RVd~~kLD~LmnlvGELvi~r~~L~~~~~~----~~~~~l~~~~~~l~ 48 (62)
T d1b3qa1 5 RVDIEKLDNLMDLMGELVIARSRILETLKK----YNIKELDESLSHLS 48 (62)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHTTSS----CCCHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCcHHHHHHHHHHH
Confidence 468999999999999999999999886544 34566777666654
No 8
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Probab=25.29 E-value=1.5e+02 Score=26.31 Aligned_cols=49 Identities=20% Similarity=0.220 Sum_probs=35.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHH
Q 021226 200 KISVEELQLCLEELEESIDLQKQAEKVIVPSYTGIDDEDIEEEFKKLEQEV 250 (315)
Q Consensus 200 ~i~~e~Ve~~mddi~E~~~~~~EI~~~L~~~~~~~De~ELe~EL~~Le~E~ 250 (315)
.++-++++++..+.++.....++...+|+.. ..--+-+-+||.++....
T Consensus 436 ~LT~le~~kL~~E~~~l~~ei~eL~~iL~s~--~~l~~~i~~EL~~lk~kf 484 (493)
T d1ab4a_ 436 KLTGLEHEKLLDEYKELLDQIAELLRILGSA--DRLMEVIREELELVREQF 484 (493)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHh
Confidence 6777889999999999999999999998541 001233456777776654
No 9
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=24.81 E-value=43 Score=21.44 Aligned_cols=27 Identities=7% Similarity=-0.092 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021226 101 LDYDVLHLIWTVEKLQLQLDIIDRHYE 127 (315)
Q Consensus 101 ~D~~I~~Lk~~~~~L~~qi~~Le~~i~ 127 (315)
.|.-+..|...+..+++.+..++.+++
T Consensus 2 ~~~E~~RL~K~l~kl~~~i~~~~~kL~ 28 (66)
T d1ivsa1 2 VEEWRRRQEKRLKELLALAERSQRKLA 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 456677888889999999999998885
No 10
>d1lvaa4 a.4.5.35 (A:575-634) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=21.17 E-value=69 Score=20.45 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=20.0
Q ss_pred cccHhhHHHhhCCCchhHH-HHHHhh
Q 021226 43 IITMKKFQDKCGGQDEASA-VLSFLT 67 (315)
Q Consensus 43 v~s~~~F~~~~~~~~d~~i-lL~yL~ 67 (315)
-|+..+|.+.++.+.-+-+ +|.||-
T Consensus 18 ~~~v~~frd~~g~sRK~ai~lLE~~D 43 (60)
T d1lvaa4 18 PFGLAEARDALGSSRKYVLPLLEYLD 43 (60)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHCccHHHHHHHHHHHh
Confidence 4899999999998766554 888883
Done!