BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021228
         (315 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HX0|A Chain A, Three-Dimensional Structure Of The Hypothetical Protein
           From Salmonella Cholerae-Suis (Aka Salmonella Enterica)
           At The Resolution 1.55 A. Northeast Structural Genomics
           Target Scr59
          Length = 154

 Score = 34.3 bits (77), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 123 GEDVMMKVISFSQQGP-RAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFM 181
           G++V  ++ +F QQ   RA  I    G +++V LR       T +  G FE++SL+G+  
Sbjct: 28  GQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEATT-SLTGTFEVISLNGTLE 86

Query: 182 LT 183
           LT
Sbjct: 87  LT 88


>pdb|2NMU|A Chain A, Crystal Structure Of The Hypothetical Protein From
           Salmonella Typhimurium Lt2. Northeast Structural
           Genomics Consortium Target Str127
          Length = 156

 Score = 33.9 bits (76), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 123 GEDVMMKVISFSQQGP-RAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFM 181
           G++V  ++ +F QQ   RA  I    G +++V LR       T +  G FE++SL+G+  
Sbjct: 28  GQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEATT-SLTGTFEVISLNGTLE 86

Query: 182 LT 183
           LT
Sbjct: 87  LT 88


>pdb|2P6Y|A Chain A, X-Ray Structure Of The Protein Q9km02_vibch From Vibrio
           Cholerae At The Resolution 1.63 A. Northeast Structural
           Genomics Consortium Target Vcr80
          Length = 142

 Score = 31.6 bits (70), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 118 ITINAGEDVMMKVISFSQQGP-RAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSL 176
           + +  G D+  +++   QQ    A  I S  G +S + +R  DS   TL     FEILSL
Sbjct: 7   LRLTRGXDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSL 65

Query: 177 SGSF 180
           SG+ 
Sbjct: 66  SGTL 69


>pdb|2Z2P|A Chain A, Crystal Structure Of Catalytically Inactive H270a
           Virginiamycin B Lyase From Staphylococcus Aureus With
           Quinupristin
 pdb|2Z2P|B Chain B, Crystal Structure Of Catalytically Inactive H270a
           Virginiamycin B Lyase From Staphylococcus Aureus With
           Quinupristin
          Length = 299

 Score = 29.3 bits (64), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 15/105 (14%)

Query: 92  RGRGRVSGHESELHAC-SVGTNFTPHVITINAGEDVMMKVIS------FSQQGPRAICIL 144
           +G+  ++ H++ + +C ++    T + +  N G  VM   IS      F++     I  +
Sbjct: 25  KGKVWITQHKANMISCINLDGKITEYELP-NKGAKVMCLTISSDGEVWFTENAANKIGRI 83

Query: 145 SANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTR 189
           +  G+I   TL  PDS+   +T EG       +G    TE  G R
Sbjct: 84  TKKGIIKEYTLPNPDSAPYGIT-EGP------NGDIWFTEMNGNR 121


>pdb|4H2F|A Chain A, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form I (Open)
           In Complex With Adenosine
 pdb|4H2G|A Chain A, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form Ii (Open)
           In Complex With Adenosine
          Length = 546

 Score = 28.5 bits (62), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 140 AICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGT 188
           ++CIL+  G+ S +  R    + GT+T+E    +L   G+F L + +G+
Sbjct: 382 SMCILNGGGIRSPIDER----NDGTITWENLAAVLPFGGTFDLVQLKGS 426


>pdb|4H1Y|P Chain P, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form Ii (Open)
           In Complex With Psb11552
          Length = 546

 Score = 28.5 bits (62), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 140 AICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGT 188
           ++CIL+  G+ S +  R    + GT+T+E    +L   G+F L + +G+
Sbjct: 382 SMCILNGGGIRSPIDER----NDGTITWENLAAVLPFGGTFDLVQLKGS 426


>pdb|4H1S|A Chain A, Crystal Structure Of A Truncated Soluble Form Of Human
           Cd73 With Ecto- 5'-Nucleotidase Activity
 pdb|4H1S|B Chain B, Crystal Structure Of A Truncated Soluble Form Of Human
           Cd73 With Ecto- 5'-Nucleotidase Activity
          Length = 530

 Score = 28.1 bits (61), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 140 AICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGT 188
           ++CIL+  G+ S +  R    + GT+T+E    +L   G+F L + +G+
Sbjct: 360 SMCILNGGGIRSPIDER----NNGTITWENLAAVLPFGGTFDLVQLKGS 404


>pdb|4H2I|A Chain A, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form Iii
           (Closed) In Complex With Ampcp
          Length = 532

 Score = 28.1 bits (61), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 140 AICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGT 188
           ++CIL+  G+ S +  R    + GT+T+E    +L   G+F L + +G+
Sbjct: 360 SMCILNGGGIRSPIDER----NDGTITWENLAAVLPFGGTFDLVQLKGS 404


>pdb|4H2B|A Chain A, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form Ii (Open)
           In Complex With Baicalin
          Length = 547

 Score = 28.1 bits (61), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 140 AICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGT 188
           ++CIL+  G+ S +  R    + GT+T+E    +L   G+F L + +G+
Sbjct: 383 SMCILNGGGIRSPIDER----NDGTITWENLAAVLPFGGTFDLVQLKGS 427


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.127    0.362 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,855,750
Number of Sequences: 62578
Number of extensions: 271957
Number of successful extensions: 584
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 582
Number of HSP's gapped (non-prelim): 12
length of query: 315
length of database: 14,973,337
effective HSP length: 99
effective length of query: 216
effective length of database: 8,778,115
effective search space: 1896072840
effective search space used: 1896072840
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (24.3 bits)