BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021228
(315 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana
GN=ESC PE=2 SV=1
Length = 311
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 84/153 (54%), Gaps = 17/153 (11%)
Query: 90 GKRGRGRVSGHESELHACSVGTNFTP-----HVITINAGEDVMMKVISFSQQGPRAICIL 144
GKR RGR G +++ + T +P HV+ ++ G D++ V +++++ R + +L
Sbjct: 85 GKRPRGRPPGSKNKAKPPIIVTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVL 144
Query: 145 SANGVISNVTLRQP---------DSSGGTLTYEGRFEILSLSGSFMLTESQGTRSRSGGM 195
NG +SNVTLRQP GG +T GRFEILSL+G+ + + +
Sbjct: 145 GGNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPPPAPPGAGG---L 201
Query: 196 SVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSF 228
S+ LA G+VVGG+V L+A+ PV ++ SF
Sbjct: 202 SIFLAGGQGQVVGGSVVAPLIASAPVILMAASF 234
>sp|Q2JVA4|GLMU_SYNJA Bifunctional protein GlmU OS=Synechococcus sp. (strain JA-3-3Ab)
GN=glmU PE=3 SV=1
Length = 621
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 14/92 (15%)
Query: 123 GEDVMMKVISFSQQGP-RAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFM 181
G+D+ ++ F++Q P +A +LSA G +S TLR D + L E R EIL+LSGS
Sbjct: 478 GQDLKQELERFARQQPLQAGFVLSAVGSLSQATLRLADQTEDYLLSE-RLEILALSGSLC 536
Query: 182 LTESQGTRSRSGGMSVSLASPD--GRVVGGAV 211
G+ + LA D GR GG +
Sbjct: 537 ----------PDGVHLHLAVADAQGRTWGGHL 558
>sp|Q2JII9|GLMU_SYNJB Bifunctional protein GlmU OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=glmU PE=3 SV=1
Length = 632
Score = 40.0 bits (92), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 123 GEDVMMKVISFSQQGP-RAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSF 180
G+D+ ++ ++Q P +A +LSA G +S TLR D +G L E R EIL+LSGS
Sbjct: 480 GQDLKQELERLARQQPLQAGFVLSAVGSLSQATLRLADQTGDHLLSE-RLEILALSGSL 537
>sp|P30002|TEGU_HHV6G Large tegument protein OS=Human herpesvirus 6A (strain GS) GN=U31
PE=3 SV=1
Length = 2077
Score = 36.2 bits (82), Expect = 0.33, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 224 VVGSFLPGNQQEQKPKKQKAESIPA--IVTPA---PSIVGVIPVNNAEKEGTDGHRQQNS 278
++ P N + +P KQ +E++ + P P++ G++P + + TD + + S
Sbjct: 1977 ILNQLPPNNTESTRPGKQTSETLTTKNLSEPKFKKPAVTGLMPKSQSIILSTDTNVPETS 2036
Query: 279 SPLKPNTASSPFR-----RDNWPTIQEPINST 305
+K NTAS+ + R+ E IN+T
Sbjct: 2037 PDVKANTASAAIKDVTLAREKINEFSESINTT 2068
>sp|P52340|DEN_HHV6U Deneddylase U31 OS=Human herpesvirus 6A (strain Uganda-1102) GN=U31
PE=3 SV=1
Length = 2077
Score = 35.4 bits (80), Expect = 0.49, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 224 VVGSFLPGNQQEQKPKKQKAESI--PAIVTPA---PSIVGVIPVNNAEKEGTDGHRQQNS 278
++ P N + +P KQ +E++ + P P++ G++P + + TD + + S
Sbjct: 1977 ILNQLPPNNTESTRPGKQTSETLTNKNLSEPKFKKPAVTGLMPKSQSIILSTDTNVPETS 2036
Query: 279 SPLKPNTASSPFR-----RDNWPTIQEPINST 305
+K NTAS+ + R+ E IN+T
Sbjct: 2037 PDVKANTASAAIKDVTLAREKINEFSESINTT 2068
>sp|P17971|KCNAL_DROME Potassium voltage-gated channel protein Shal OS=Drosophila
melanogaster GN=Shal PE=1 SV=2
Length = 571
Score = 35.0 bits (79), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 204 GRVVGG--AVAGLLVAAGPVQVVVGSFLPGNQQEQKPKKQKAE 244
G++VGG +++G+LV A PV V+V +F Q Q+ K+KA+
Sbjct: 383 GKIVGGVCSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRKAQ 425
>sp|Q8I4B0|KCNSK_CAEEL Potassium voltage-gated channel protein shk-1 OS=Caenorhabditis
elegans GN=shk-1 PE=2 SV=1
Length = 536
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 201 SPDGRVVGG--AVAGLLVAAGPVQVVVGSFLPGNQQEQKPKKQKAE 244
SP G+VVGG A+ G+L A PV ++V +F +QE + K++
Sbjct: 482 SPFGKVVGGMCAMIGVLTLALPVPIIVANFKHFYRQENRLASMKSK 527
>sp|Q5RAJ5|STK36_PONAB Serine/threonine-protein kinase 36 OS=Pongo abelii GN=STK36 PE=2
SV=1
Length = 1315
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 21/141 (14%)
Query: 157 QPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSR--SGGMSVSLASPDGRVVGGAVAGL 214
QPD S TL + +L +L E+ SR S SL + V+ G + GL
Sbjct: 574 QPDDSERTLRRD------NLMCFTVLCEAMDGNSRAISKAFYSSLLTTKQVVLDGLLRGL 627
Query: 215 LVAAGPVQVVVGSFLPGNQQEQKPKKQKAESIPAIVTPAPSIVGVIPVNNAE----KEGT 270
V PV PG Q +P ++++E IP ++ A + + PV + KE
Sbjct: 628 TVPQLPVHTP-----PGAPQVSQPLREQSEDIPGAISSALAAICTAPVGLPDCWDGKEQV 682
Query: 271 DGHRQ----QNSSPLKPNTAS 287
H ++SS L+P+ S
Sbjct: 683 CWHLANQLTEDSSQLRPSLVS 703
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.128 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,335,135
Number of Sequences: 539616
Number of extensions: 5753192
Number of successful extensions: 12541
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 12495
Number of HSP's gapped (non-prelim): 97
length of query: 315
length of database: 191,569,459
effective HSP length: 117
effective length of query: 198
effective length of database: 128,434,387
effective search space: 25430008626
effective search space used: 25430008626
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)