Query 021228
Match_columns 315
No_of_seqs 226 out of 599
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 14:37:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021228.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021228hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dt4_A Hypothetical protein PH 99.9 3.8E-27 1.3E-31 200.1 11.4 111 114-230 10-123 (143)
2 3htn_A Putative DNA binding pr 99.9 5.7E-27 1.9E-31 201.1 12.4 112 114-230 16-130 (149)
3 2hx0_A Putative DNA-binding pr 99.9 2.8E-26 9.7E-31 197.7 16.2 114 107-229 12-126 (154)
4 2p6y_A Hypothetical protein VC 99.9 2.8E-26 9.6E-31 195.2 15.9 109 113-230 2-111 (142)
5 2h6l_A Hypothetical protein; N 99.9 2.4E-26 8.1E-31 195.8 10.9 111 113-230 9-122 (146)
6 3hwu_A Putative DNA-binding pr 99.9 1.8E-24 6E-29 185.1 13.1 111 114-229 13-126 (147)
7 2ezd_A High mobility group pro 85.6 0.45 1.5E-05 29.9 2.1 15 89-103 3-17 (26)
8 4dyq_A Gene 1 protein; GP1, oc 63.6 2.1 7.2E-05 35.3 0.9 14 54-67 3-16 (140)
9 1xv2_A ALDC, hypothetical prot 49.7 56 0.0019 29.7 8.0 84 137-223 108-202 (237)
10 2esy_A LUNG surfactant protein 33.8 18 0.0006 23.7 1.4 12 18-29 1-12 (32)
11 1t3g_A X-linked interleukin-1 24.9 45 0.0015 27.8 2.9 36 111-146 40-77 (159)
No 1
>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}
Probab=99.94 E-value=3.8e-27 Score=200.10 Aligned_cols=111 Identities=17% Similarity=0.285 Sum_probs=99.3
Q ss_pred eeEEEEecCCChHHHHHHHHHHhCCccEEEEEeeeeeeeEEEeCCCCCC---CceeeccceeEEEeeeeeeccCCCCCcC
Q 021228 114 TPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQGTRS 190 (315)
Q Consensus 114 ~phVIrL~pGEDIv~kI~~Faq~~~ra~cILSAiGAVSnVTLr~~~~s~---~~~tyeG~fEILSLsGsis~~e~gg~~~ 190 (315)
++|++||++||||+++|++||+++.+..|+++++|++++|+|++++.+. ..++|+|+|||+||+|||.+.++.
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g~---- 85 (143)
T 2dt4_A 10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDGE---- 85 (143)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETTE----
T ss_pred CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCCC----
Confidence 7999999999999999999998766655556999999999999998764 368899999999999999997653
Q ss_pred CCCceEEEEeCCCCcEEeeeccCccEEecceEEEEEEecC
Q 021228 191 RSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLP 230 (315)
Q Consensus 191 ~~~HLHVSLA~~DGrV~GGHL~g~lIAastVEVVVgsF~~ 230 (315)
++.|||++|+|.||+++||||..++ ++ ++||+|.+|..
T Consensus 86 p~~HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~~~ 123 (143)
T 2dt4_A 86 PFVHAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQELKG 123 (143)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEEEE
T ss_pred ceeeEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEcCC
Confidence 8999999999999999999999888 56 99999999844
No 2
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=99.94 E-value=5.7e-27 Score=201.09 Aligned_cols=112 Identities=16% Similarity=0.265 Sum_probs=101.2
Q ss_pred eeEEEEecCCChHHHHHHHHHHhCCccEEEEEeeeeeeeEEEeCCCCCC---CceeeccceeEEEeeeeeeccCCCCCcC
Q 021228 114 TPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQGTRS 190 (315)
Q Consensus 114 ~phVIrL~pGEDIv~kI~~Faq~~~ra~cILSAiGAVSnVTLr~~~~s~---~~~tyeG~fEILSLsGsis~~e~gg~~~ 190 (315)
+.|++||++||||+++|.+||+++.+..|+++++|++++|+|++++.+. ..++|+|+|||+||+|||++.++ +
T Consensus 16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG----~ 91 (149)
T 3htn_A 16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNE----Q 91 (149)
T ss_dssp TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETT----E
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCC----C
Confidence 8999999999999999999998877777777999999999999998764 36789999999999999999865 3
Q ss_pred CCCceEEEEeCCCCcEEeeeccCccEEecceEEEEEEecC
Q 021228 191 RSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLP 230 (315)
Q Consensus 191 ~~~HLHVSLA~~DGrV~GGHL~g~lIAastVEVVVgsF~~ 230 (315)
++.|||++|+|.||+++||||..+ ++..++||+|.++..
T Consensus 92 p~~HlH~sl~~~~G~v~gGHl~~g-~V~~t~Ei~i~~~~~ 130 (149)
T 3htn_A 92 VYLHLHITVGRSDYSALAGHLLSA-IQNGAGEFVVEDYSE 130 (149)
T ss_dssp EEEEEEEEEECTTSBEEEEEEEEE-EEEEEEEEEEEECCS
T ss_pred ceEEEEEEEECCCCCEEeEEeCCC-EEEEEEEEEEEEcCC
Confidence 899999999999999999999987 567899999998843
No 3
>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A
Probab=99.94 E-value=2.8e-26 Score=197.68 Aligned_cols=114 Identities=23% Similarity=0.409 Sum_probs=103.8
Q ss_pred cccCCCceeEEEEecCCChHHHHHHHHHH-hCCccEEEEEeeeeeeeEEEeCCCCCCCceeeccceeEEEeeeeeeccCC
Q 021228 107 CSVGTNFTPHVITINAGEDVMMKVISFSQ-QGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTES 185 (315)
Q Consensus 107 ~s~g~~f~phVIrL~pGEDIv~kI~~Faq-~~~ra~cILSAiGAVSnVTLr~~~~s~~~~tyeG~fEILSLsGsis~~e~ 185 (315)
-+.+..+++|++||++||||+++|.+||+ ++.+++||++++|++++++|++++... +++|+|+|||+||+|+|+++
T Consensus 12 ~~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~-- 88 (154)
T 2hx0_A 12 HHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT-- 88 (154)
T ss_dssp CCSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT--
T ss_pred cCCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC--
Confidence 34567899999999999999999999996 577789999999999999999999875 78899999999999999985
Q ss_pred CCCcCCCCceEEEEeCCCCcEEeeeccCccEEecceEEEEEEec
Q 021228 186 QGTRSRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFL 229 (315)
Q Consensus 186 gg~~~~~~HLHVSLA~~DGrV~GGHL~g~lIAastVEVVVgsF~ 229 (315)
..|||++|+|.||+++||||.+++++..++||+|.+|.
T Consensus 89 ------~~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~~ 126 (154)
T 2hx0_A 89 ------GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELP 126 (154)
T ss_dssp ------EEEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECT
T ss_pred ------CCEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEcc
Confidence 26999999999999999999987777789999999883
No 4
>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}
Probab=99.94 E-value=2.8e-26 Score=195.19 Aligned_cols=109 Identities=26% Similarity=0.386 Sum_probs=98.7
Q ss_pred ceeEEEEecCCChHHHHHHHHHHh-CCccEEEEEeeeeeeeEEEeCCCCCCCceeeccceeEEEeeeeeeccCCCCCcCC
Q 021228 113 FTPHVITINAGEDVMMKVISFSQQ-GPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMLTESQGTRSR 191 (315)
Q Consensus 113 f~phVIrL~pGEDIv~kI~~Faq~-~~ra~cILSAiGAVSnVTLr~~~~s~~~~tyeG~fEILSLsGsis~~e~gg~~~~ 191 (315)
|++|++||++||||+++|.+||++ +.+++||++++|++++++|++++... +++|+|+|||+||+|||.++
T Consensus 2 ~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~-------- 72 (142)
T 2p6y_A 2 IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSLSGTLTYQ-------- 72 (142)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEECSCEEEEEEEEEECSS--------
T ss_pred CcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecCCcEEEEEeEEEEeCC--------
Confidence 799999999999999999999975 66689999999999999999999864 78899999999999999985
Q ss_pred CCceEEEEeCCCCcEEeeeccCccEEecceEEEEEEecC
Q 021228 192 SGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLP 230 (315)
Q Consensus 192 ~~HLHVSLA~~DGrV~GGHL~g~lIAastVEVVVgsF~~ 230 (315)
..|||++|+|.||+++||||.++++++.++||+|.+|..
T Consensus 73 ~~HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~~~ 111 (142)
T 2p6y_A 73 HCHLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYPQ 111 (142)
T ss_dssp CEEEEEEEECTTSCEEEEEECTTCEECC-EEEEEEECTT
T ss_pred CCEEEEEEECCCCCEEccccCCCCeEEEEEEEEEEEccC
Confidence 269999999999999999999877778999999998843
No 5
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=99.93 E-value=2.4e-26 Score=195.78 Aligned_cols=111 Identities=23% Similarity=0.258 Sum_probs=98.3
Q ss_pred ceeEEEEecCCChHHHHHHHHHHhCCccEEEEEeeeeeeeEEEeCCCCCC---CceeeccceeEEEeeeeeeccCCCCCc
Q 021228 113 FTPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQGTR 189 (315)
Q Consensus 113 f~phVIrL~pGEDIv~kI~~Faq~~~ra~cILSAiGAVSnVTLr~~~~s~---~~~tyeG~fEILSLsGsis~~e~gg~~ 189 (315)
-++|++||++||||+++|.+||++..+..|+++++|++++++|++++... ..++|+|+|||+||+|||++.++.
T Consensus 9 gr~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg~--- 85 (146)
T 2h6l_A 9 GKGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSK--- 85 (146)
T ss_dssp CEEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTE---
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCCC---
Confidence 36999999999999999999997655554445999999999999998875 378899999999999999997653
Q ss_pred CCCCceEEEEeCCCCcEEeeeccCccEEecceEEEEEEecC
Q 021228 190 SRSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFLP 230 (315)
Q Consensus 190 ~~~~HLHVSLA~~DGrV~GGHL~g~lIAastVEVVVgsF~~ 230 (315)
++.|||++|+ .||+++||||.+++| .++||+|.+|..
T Consensus 86 -p~~HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~~ 122 (146)
T 2h6l_A 86 -PFCHIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLSG 122 (146)
T ss_dssp -EEEEEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECBS
T ss_pred -ceeeEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcCC
Confidence 8999999999 999999999998885 699999999954
No 6
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=99.91 E-value=1.8e-24 Score=185.06 Aligned_cols=111 Identities=19% Similarity=0.279 Sum_probs=98.8
Q ss_pred eeEEEEecCCChHHHHHHHHHHhCCccEEEEEeeeeeeeEEEeCCCCCC---CceeeccceeEEEeeeeeeccCCCCCcC
Q 021228 114 TPHVITINAGEDVMMKVISFSQQGPRAICILSANGVISNVTLRQPDSSG---GTLTYEGRFEILSLSGSFMLTESQGTRS 190 (315)
Q Consensus 114 ~phVIrL~pGEDIv~kI~~Faq~~~ra~cILSAiGAVSnVTLr~~~~s~---~~~tyeG~fEILSLsGsis~~e~gg~~~ 190 (315)
+.+++||++||||+++|.+||+++.+..++++++|++++++|++++.+. ...+++ ++||+||+|||+..|+ +
T Consensus 13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG----~ 87 (147)
T 3hwu_A 13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEG----K 87 (147)
T ss_dssp TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETT----E
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCC----C
Confidence 5699999999999999999999888888888999999999999998764 256688 8999999999998765 4
Q ss_pred CCCceEEEEeCCCCcEEeeeccCccEEecceEEEEEEec
Q 021228 191 RSGGMSVSLASPDGRVVGGAVAGLLVAAGPVQVVVGSFL 229 (315)
Q Consensus 191 ~~~HLHVSLA~~DGrV~GGHL~g~lIAastVEVVVgsF~ 229 (315)
++.|||++|+|.||+++||||..+.|...|+||+|..+.
T Consensus 88 p~~HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~~ 126 (147)
T 3hwu_A 88 PSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYP 126 (147)
T ss_dssp EEEEEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEES
T ss_pred ceEEEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEcC
Confidence 899999999999999999999988554359999999863
No 7
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=85.65 E-value=0.45 Score=29.92 Aligned_cols=15 Identities=40% Similarity=0.671 Sum_probs=13.1
Q ss_pred CCCCCCCCCCCCCCC
Q 021228 89 SGKRGRGRVSGHESE 103 (315)
Q Consensus 89 ~~krgrgrp~gs~g~ 103 (315)
..||.||||.||+++
T Consensus 3 tpKrpRgRpkGSKNk 17 (26)
T 2ezd_A 3 TPKRPRGRPKGSKNK 17 (26)
T ss_dssp SCCCCSSCCTTCCCC
T ss_pred CCcCCCCCcCccccc
Confidence 359999999999886
No 8
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=63.55 E-value=2.1 Score=35.28 Aligned_cols=14 Identities=43% Similarity=0.878 Sum_probs=6.2
Q ss_pred ccccCCCCCCCCCC
Q 021228 54 EKKKRGRPRKYGPD 67 (315)
Q Consensus 54 ~kkkRGRPrky~~d 67 (315)
.|+|+|||.||-+.
T Consensus 3 ~~~k~GRPtk~t~e 16 (140)
T 4dyq_A 3 TEPKAGRPSDYMPE 16 (140)
T ss_dssp -------CCSCCTT
T ss_pred CCCCCCCCCCCCHH
Confidence 47999999999876
No 9
>1xv2_A ALDC, hypothetical protein, similar to alpha- acetolactate decarboxylase; structural genomics, MCSG; 2.00A {Staphylococcus aureus subsp} SCOP: d.290.1.1
Probab=49.68 E-value=56 Score=29.71 Aligned_cols=84 Identities=13% Similarity=0.144 Sum_probs=47.7
Q ss_pred CCccEEEEEeeeeeeeEEEeCCCCCCCc-------eeeccceeEEEeeeee----eccCCCCCcCCCCceEEEEeCCCCc
Q 021228 137 GPRAICILSANGVISNVTLRQPDSSGGT-------LTYEGRFEILSLSGSF----MLTESQGTRSRSGGMSVSLASPDGR 205 (315)
Q Consensus 137 ~~ra~cILSAiGAVSnVTLr~~~~s~~~-------~tyeG~fEILSLsGsi----s~~e~gg~~~~~~HLHVSLA~~DGr 205 (315)
.....|-+-.-|..+++++|-....... ..-+-.|++=...|++ ++.--.+..-+--|||.. +.| |
T Consensus 108 s~N~f~airi~G~F~~v~~R~vp~Q~~Py~~l~e~~~~Q~~f~~~~v~GTivGF~tP~~~~Gi~v~G~HlHFi--sdD-r 184 (237)
T 1xv2_A 108 SENLFSAVKIYGTFKHMHVRMMPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGVGSAGFHIHFA--DDE-R 184 (237)
T ss_dssp CTTSCEEEEEEEEEEEEEEECCCCCCSSCCCTHHHHTTCCEEEEEEEEEEEEEEEECGGGBTTBCSEEEEEEE--ETT-S
T ss_pred ccccEEEEEEEEEeCeEEEEecCCCCCCCCCHHHHhcCCceEEEeccEEEEEEEecchhhcccCCceeEEEEE--cCC-C
Confidence 5556788899999999999965422110 1111225555555555 454322222223355554 433 5
Q ss_pred EEeeeccCccEEecceEE
Q 021228 206 VVGGAVAGLLVAAGPVQV 223 (315)
Q Consensus 206 V~GGHL~g~lIAastVEV 223 (315)
-+||||.+-.+-..++++
T Consensus 185 ~~GGHVldf~~~~~~~~~ 202 (237)
T 1xv2_A 185 AYGGHVLDFEVDDVVVEI 202 (237)
T ss_dssp SCEEEEEEEEEEEEEEEE
T ss_pred CCCcceEEEEecceEEEE
Confidence 589999985555555555
No 10
>2esy_A LUNG surfactant protein C; lipid binding protein; NMR {Synthetic}
Probab=33.84 E-value=18 Score=23.68 Aligned_cols=12 Identities=42% Similarity=0.847 Sum_probs=10.6
Q ss_pred CCCCcccCcCCC
Q 021228 18 APSAYHVAPRTE 29 (315)
Q Consensus 18 ~p~~~~~a~r~~ 29 (315)
.|+||..+||.+
T Consensus 1 sPPdYSa~P~gr 12 (32)
T 2esy_A 1 SPPDYSAAPRGR 12 (32)
T ss_dssp CCCCCCSCCCSS
T ss_pred CCCccccCcCcc
Confidence 489999999987
No 11
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=24.91 E-value=45 Score=27.79 Aligned_cols=36 Identities=11% Similarity=0.170 Sum_probs=28.5
Q ss_pred CCceeEEE--EecCCChHHHHHHHHHHhCCccEEEEEe
Q 021228 111 TNFTPHVI--TINAGEDVMMKVISFSQQGPRAICILSA 146 (315)
Q Consensus 111 ~~f~phVI--rL~pGEDIv~kI~~Faq~~~ra~cILSA 146 (315)
.+++..+- .+.+|++|.+.|.+..++..+.++|||-
T Consensus 40 ~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~ 77 (159)
T 1t3g_A 40 YGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTP 77 (159)
T ss_dssp SCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECH
T ss_pred CCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEcc
Confidence 44554432 2679999999999999999999999985
Done!