BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021229
(315 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 116/258 (44%), Gaps = 26/258 (10%)
Query: 52 LVLIHGLG--ANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTTRPER---SESFQAECV 106
++LIHG G +A W IP + ++ V PD++ FG FT RPE S+ + +
Sbjct: 28 VILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFG--FTDRPENYNYSKDSWVDHI 85
Query: 107 MRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVVICCSGVCLEEQDLRDRMFKVS 166
+ +M+A ++K +VG ++GG + + A ++ E+++++V+ + F V+
Sbjct: 86 IGIMDALEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGT---------RFDVT 136
Query: 167 DLEEASKILVPQSPGKLKELMRYTFFKRXXXXXXXXXXXXD------YIDAMCTEYLEEK 220
+ A P S ++ L+ + R + + ++ + + E +
Sbjct: 137 EGLNAVWGYTP-SIENMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPR 195
Query: 221 RELVRAIPKDRKISNIDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGH 280
+ + A+ + +I + TLI+ G DQ+ PL RL L D AQL V + GH
Sbjct: 196 QRWIDALASSDE--DIKTLPNETLIIHGREDQVVPLSSSLRL-GELIDRAQLHVFGRCGH 252
Query: 281 AFNYEKPKEFYKHLKSFL 298
E+ F + + F
Sbjct: 253 WTQIEQTDRFNRLVVEFF 270
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 116/258 (44%), Gaps = 26/258 (10%)
Query: 52 LVLIHGLG--ANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTTRPER---SESFQAECV 106
++LIHG G +A W IP + ++ V PD++ FG FT RPE S+ + +
Sbjct: 28 VILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFG--FTDRPENYNYSKDSWVDHI 85
Query: 107 MRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVVICCSGVCLEEQDLRDRMFKVS 166
+ +M+A ++K +VG S+GG + + A ++ E+++++V+ + F V+
Sbjct: 86 IGIMDALEIEKAHIVGNSFGGGLAIATALRYSERVDRMVLMGA---------VGTRFDVT 136
Query: 167 DLEEASKILVPQSPGKLKELMRYTFFKRXXXXXXXXXXXXD------YIDAMCTEYLEEK 220
+ A P S ++ L+ + R + + ++ + + E +
Sbjct: 137 EGLNAVWGYTP-SIENMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPR 195
Query: 221 RELVRAIPKDRKISNIDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGH 280
+ + A+ + +I + TLI+ G DQ+ PL RL L D AQL V + GH
Sbjct: 196 QRWIDALASSDE--DIKTLPNETLIIHGREDQVVPLSSSLRL-GELIDRAQLHVFGRCGH 252
Query: 281 AFNYEKPKEFYKHLKSFL 298
E+ F + + F
Sbjct: 253 WTQIEQTDRFNRLVVEFF 270
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 110/259 (42%), Gaps = 32/259 (12%)
Query: 46 NDSKPDLVLIHGLG--ANALWQWTNIIPHMIHYFNVYVPDLLFFGDS--FTTRPERSESF 101
+ P +VL+HG G A+A W IIP + F V PDL+ FG S T P S+
Sbjct: 26 DPQSPAVVLLHGAGPGAHAASNWRPIIPDLAENFFVVAPDLIGFGQSEYPETYPGHIMSW 85
Query: 102 ---QAECVMRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVVICCS-GVCLEEQD 157
+ E ++ +M ++K +VG S GG V + + E+ +KV + S G + +
Sbjct: 86 VGMRVEQILGLMNHFGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARP 145
Query: 158 LR----------DRMFKVSDLEEASKILVPQSPGKLKELMRYTFFKRXXXXXXXXXXXXD 207
R+ +L S + P++ ++E+++ F
Sbjct: 146 PELARLLAFYADPRLTPYRELIH-SFVYDPENFPGMEEIVKSRF-------EVANDPEVR 197
Query: 208 YIDAMCTEYLEEKRELVRAIPKDRKISNIDKITQPTLILWGEHDQIFPLELGRRLKSHLG 267
I + E ++ E + P + + ++ L+ G D+I PL+ L HL
Sbjct: 198 RIQEVMFESMKAGMESLVIPP-----ATLGRLPHDVLVFHGRQDRIVPLDTSLYLTKHL- 251
Query: 268 DNAQLIVIKKAGHAFNYEK 286
+A+L+V+ + GH E+
Sbjct: 252 KHAELVVLDRCGHWAQLER 270
>pdb|3OM8|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
pdb|3OM8|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
Length = 266
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 104/253 (41%), Gaps = 18/253 (7%)
Query: 49 KPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTTRPERSESFQAECVMR 108
KP L L + +G L W +P + +F V D G S + + E V+
Sbjct: 27 KPLLALSNSIGTT-LHXWDAQLPALTRHFRVLRYDARGHGASSVPPGPYTLARLGEDVLE 85
Query: 109 VMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVVICCSGVCLEEQDLRD-RMFKVSD 167
+++A V++ +GLS GG VG +A ++IE++V+ + L D R+ V
Sbjct: 86 LLDALEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPAAQWDERIAAVLQ 145
Query: 168 LEEASKILVPQSPGKLKELMRYTFFKRXXXXXXXXXXXXDYID--AMCTEYLEEKRELVR 225
E+ S+ + G L +R + + + + +R
Sbjct: 146 AEDXSET----AAGFLGNWFPPALLERAEPVVERFRAXLXATNRHGLAGSFAAVRDTDLR 201
Query: 226 AIPKDRKISNIDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYE 285
A + +I +PTL++ G +D + G + + + A+L+ + A H N E
Sbjct: 202 A--------QLARIERPTLVIAGAYDTVTAASHGELIAASIA-GARLVTL-PAVHLSNVE 251
Query: 286 KPKEFYKHLKSFL 298
P+ F + SFL
Sbjct: 252 FPQAFEGAVLSFL 264
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 100/251 (39%), Gaps = 42/251 (16%)
Query: 68 NIIPHMIHYFNVYVPDLLFFGDS-FTTRPERSESFQAECVMRVMEAHSVKKLSLVGLSYG 126
N+ P + + V + D F S E+ A V +M+A + + LVG S G
Sbjct: 55 NVGPFVDAGYRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDIDRAHLVGNSMG 114
Query: 127 GFVGYSMAAQFKEKIEKVVICCSGVCLEEQDLRDRMFKVSDLEEAS---KILVPQSPGKL 183
G + A ++ ++I K+++ G L MF +E K+ S L
Sbjct: 115 GATALNFALEYPDRIGKLILMGPG------GLGPSMFAPMPMEGIKLLFKLYAEPSYETL 168
Query: 184 KELMRYTFFKRXXXXXXXXXXXXDYIDAMCTEYLEEKRELVRAIPKDRK----------- 232
K++++ + + + E L+ + E ++ P+ K
Sbjct: 169 KQMLQVFLYDQSL---------------ITEELLQGRWEAIQRQPEHLKNFLISAQKAPL 213
Query: 233 -----ISNIDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKP 287
+ + +I T I WG D+ PL+ G +L ++ D+A+L V K GH +E
Sbjct: 214 STWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNI-DDARLHVFSKCGHWAQWEHA 272
Query: 288 KEFYKHLKSFL 298
EF + + FL
Sbjct: 273 DEFNRLVIDFL 283
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 107/243 (44%), Gaps = 26/243 (10%)
Query: 65 QWTNIIPHMIHYFNVYVPDLLFFGDSFTTRPERSESFQAECVMRVMEAHSVK-KLSLVGL 123
W N+IP + ++ V D+L FG + E ++ + + ++A + K+S+VG
Sbjct: 54 NWRNVIPILARHYRVIAMDMLGFGKTAKPDIEYTQDRRIRHLHDFIKAMNFDGKVSIVGN 113
Query: 124 SYGGFVGYSMAAQFKEKIEKVVICCS-GVCLE-EQDLRDRM---FKVSDLEEASKILVPQ 178
S GG G ++ E + +V+ S G+ +E +DLR + F + K L
Sbjct: 114 SMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINYDFTREGMVHLVKALT-N 172
Query: 179 SPGKLKELM---RYTFFKRXXXXXXXXXXXXDYIDAMCTEYLEEKRELVRAIPKDRKISN 235
K+ + M RYT+ Y+ M +++ E+ L D +
Sbjct: 173 DGFKIDDAMINSRYTY-------ATDEATRKAYVATM--QWIREQGGLFY----DPEF-- 217
Query: 236 IDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKPKEFYKHLK 295
I K+ PTL++ G+ D++ P+E + L D++ +I GH E P++F
Sbjct: 218 IRKVQVPTLVVQGKDDKVVPVETAYKFLD-LIDDSWGYIIPHCGHWAMIEHPEDFANATL 276
Query: 296 SFL 298
SFL
Sbjct: 277 SFL 279
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 100/251 (39%), Gaps = 42/251 (16%)
Query: 68 NIIPHMIHYFNVYVPDLLFFGDS-FTTRPERSESFQAECVMRVMEAHSVKKLSLVGLSYG 126
N+ P + + V + D F S E+ A V +M+A + + LVG + G
Sbjct: 55 NVGPFVDAGYRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDIDRAHLVGNAMG 114
Query: 127 GFVGYSMAAQFKEKIEKVVICCSGVCLEEQDLRDRMFKVSDLEEAS---KILVPQSPGKL 183
G + A ++ ++I K+++ G L MF +E K+ S L
Sbjct: 115 GATALNFALEYPDRIGKLILMGPG------GLGPSMFAPMPMEGIKLLFKLYAEPSYETL 168
Query: 184 KELMRYTFFKRXXXXXXXXXXXXDYIDAMCTEYLEEKRELVRAIPKDRK----------- 232
K++++ + + + E L+ + E ++ P+ K
Sbjct: 169 KQMLQVFLYDQSL---------------ITEELLQGRWEAIQRQPEHLKNFLISAQKAPL 213
Query: 233 -----ISNIDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKP 287
+ + +I T I WG D+ PL+ G +L ++ D+A+L V K GH +E
Sbjct: 214 STWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNI-DDARLHVFSKCGHWAQWEHA 272
Query: 288 KEFYKHLKSFL 298
EF + + FL
Sbjct: 273 DEFNRLVIDFL 283
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 100/251 (39%), Gaps = 42/251 (16%)
Query: 68 NIIPHMIHYFNVYVPDLLFFGDS-FTTRPERSESFQAECVMRVMEAHSVKKLSLVGLSYG 126
N+ P + + V + D F S E+ A V +M+A + + LVG + G
Sbjct: 52 NVGPFVDAGYRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDIDRAHLVGNAMG 111
Query: 127 GFVGYSMAAQFKEKIEKVVICCSGVCLEEQDLRDRMFKVSDLEEAS---KILVPQSPGKL 183
G + A ++ ++I K+++ G L MF +E K+ S L
Sbjct: 112 GATALNFALEYPDRIGKLILMGPG------GLGPSMFAPMPMEGIKLLFKLYAEPSYETL 165
Query: 184 KELMRYTFFKRXXXXXXXXXXXXDYIDAMCTEYLEEKRELVRAIPKDRK----------- 232
K++++ + + + E L+ + E ++ P+ K
Sbjct: 166 KQMLQVFLYDQSL---------------ITEELLQGRWEAIQRQPEHLKNFLISAQKAPL 210
Query: 233 -----ISNIDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKP 287
+ + +I T I WG D+ PL+ G +L ++ D+A+L V K GH +E
Sbjct: 211 STWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNI-DDARLHVFSKCGHWAQWEHA 269
Query: 288 KEFYKHLKSFL 298
EF + + FL
Sbjct: 270 DEFNRLVIDFL 280
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 109/255 (42%), Gaps = 15/255 (5%)
Query: 52 LVLIHGLGANALWQWTN----IIPHMIHYFNVYVPDLLFFG--DSFTTRPERSESFQAEC 105
+VL+HG G A W N I P + + V + D +G DS RS+ A
Sbjct: 39 VVLLHGSGPGAT-GWANFSRNIDPLVEAGYRVILLDCPGWGKSDSVVNSGSRSD-LNARI 96
Query: 106 VMRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVVICCSGVCLEEQDLRDRMFKV 165
+ V++ + K+ L+G S GG + ++ E++ K+V+ G L M
Sbjct: 97 LKSVVDQLDIAKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGGTG--GMSLFTPM-PT 153
Query: 166 SDLEEASKILVPQSPGKLKELMRYTFFKRXXXXXXXXXXXXDYIDAMCTEYLEEKRELVR 225
++ +++ + LK +M F + + + ++LE + +
Sbjct: 154 EGIKRLNQLYRQPTIENLKLMMDIFVFDTSDLTDALFEARLNNMLSR-RDHLENFVKSLE 212
Query: 226 AIPKDRK--ISNIDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFN 283
A PK + +I TLI+WG +D+ P++ G RL S + ++L + + GH
Sbjct: 213 ANPKQFPDFGPRLAEIKAQTLIVWGRNDRFVPMDAGLRLLSGIA-GSELHIFRDCGHWAQ 271
Query: 284 YEKPKEFYKHLKSFL 298
+E F + + +FL
Sbjct: 272 WEHADAFNQLVLNFL 286
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 99/251 (39%), Gaps = 42/251 (16%)
Query: 68 NIIPHMIHYFNVYVPDLLFFGDS-FTTRPERSESFQAECVMRVMEAHSVKKLSLVGLSYG 126
N+ P + + V + D F S E+ A V +M+A + + LVG S G
Sbjct: 55 NVGPFVDAGYRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDIDRAHLVGNSMG 114
Query: 127 GFVGYSMAAQFKEKIEKVVICCSGVCLEEQDLRDRMFKVSDLEEAS---KILVPQSPGKL 183
G + A ++ ++I K+++ G L MF +E K+ S L
Sbjct: 115 GATALNFALEYPDRIGKLILMGPG------GLGPSMFAPMPMEGIKLLFKLYAEPSYETL 168
Query: 184 KELMRYTFFKRXXXXXXXXXXXXDYIDAMCTEYLEEKRELVRAIPKDRK----------- 232
K++++ + + + E L+ + E ++ P+ K
Sbjct: 169 KQMLQVFLYDQSL---------------ITEELLQGRWEAIQRQPEHLKNFLISAQKAPL 213
Query: 233 -----ISNIDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKP 287
+ + +I T I WG D+ PL+ G +L ++ D+A+L V K G +E
Sbjct: 214 STWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNI-DDARLHVFSKCGQWAQWEHA 272
Query: 288 KEFYKHLKSFL 298
EF + + FL
Sbjct: 273 DEFNRLVIDFL 283
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 101/260 (38%), Gaps = 24/260 (9%)
Query: 52 LVLIHGLGANALWQWTNI---IPHMIHYFNVYVPDLLFFGDSFTTRPERSE--SFQAECV 106
+VL+HG G A WTN I + +F+V D +G S R E + + A +
Sbjct: 59 VVLLHGGGPGAA-SWTNFSRNIAVLARHFHVLAVDQPGYGHS-DKRAEHGQFNRYAAMAL 116
Query: 107 MRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVVICCSGVCLEEQDLRDRMFK-- 164
+ + + ++ LVG S GG A + + ++V+ G L +F
Sbjct: 117 KGLFDQLGLGRVPLVGNSLGGGTAVRFALDYPARAGRLVLMGPG------GLSINLFAPD 170
Query: 165 -VSDLEEASKILVPQSPGKLKELMRYTFFKRXXXXXXXXXXXXDYIDAMCTEYLEEKREL 223
++ SK V + L+ +R + + + A E L R +
Sbjct: 171 PTEGVKRLSKFSVAPTRENLEAFLRVMVYDKNLITPELVDQR--FALASTPESLTATRAM 228
Query: 224 VRAIP-----KDRKISNIDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKA 278
++ + ++ QP L++WG D++ PL+ G + AQL V +
Sbjct: 229 GKSFAGADFEAGMMWREVYRLRQPVLLIWGREDRVNPLD-GALVALKTIPRAQLHVFGQC 287
Query: 279 GHAFNYEKPKEFYKHLKSFL 298
GH EK EF K FL
Sbjct: 288 GHWVQVEKFDEFNKLTIEFL 307
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 99/251 (39%), Gaps = 42/251 (16%)
Query: 68 NIIPHMIHYFNVYVPDLLFFGDS-FTTRPERSESFQAECVMRVMEAHSVKKLSLVGLSYG 126
N+ P + + V + D F S E+ A V +M+A + + LVG + G
Sbjct: 55 NVGPFVDAGYRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDIDRAHLVGNAMG 114
Query: 127 GFVGYSMAAQFKEKIEKVVICCSGVCLEEQDLRDRMFKVSDLEEAS---KILVPQSPGKL 183
G + A ++ ++I K+++ G L MF +E K+ S L
Sbjct: 115 GATALNFALEYPDRIGKLILMGPG------GLGPSMFAPMPMEGIKLLFKLYAEPSYETL 168
Query: 184 KELMRYTFFKRXXXXXXXXXXXXDYIDAMCTEYLEEKRELVRAIPKDRK----------- 232
K++++ + + + E L+ + E ++ P+ K
Sbjct: 169 KQMLQVFLYDQSL---------------ITEELLQGRWEAIQRQPEHLKNFLISAQKAPL 213
Query: 233 -----ISNIDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKP 287
+ + +I T I WG D+ PL+ G +L ++ D+A+L V K G +E
Sbjct: 214 STWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNI-DDARLHVFSKCGQWAQWEHA 272
Query: 288 KEFYKHLKSFL 298
EF + + FL
Sbjct: 273 DEFNRLVIDFL 283
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 101/260 (38%), Gaps = 24/260 (9%)
Query: 52 LVLIHGLGANALWQWTNI---IPHMIHYFNVYVPDLLFFGDSFTTRPERSE--SFQAECV 106
+VL+HG G A WTN I + +F+V D +G S R E + + A +
Sbjct: 39 VVLLHGGGPGAA-SWTNFSRNIAVLARHFHVLAVDQPGYGHS-DKRAEHGQFNRYAAMAL 96
Query: 107 MRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVVICCSGVCLEEQDLRDRMFK-- 164
+ + + ++ LVG + GG A + + ++V+ G L +F
Sbjct: 97 KGLFDQLGLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGPG------GLSINLFAPD 150
Query: 165 -VSDLEEASKILVPQSPGKLKELMRYTFFKRXXXXXXXXXXXXDYIDAMCTEYLEEKREL 223
++ SK V + L+ +R + + + A E L R +
Sbjct: 151 PTEGVKRLSKFSVAPTRENLEAFLRVMVYDKNLITPELVDQR--FALASTPESLTATRAM 208
Query: 224 VRAIP-----KDRKISNIDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKA 278
++ + ++ QP L++WG D++ PL+ G + AQL V +
Sbjct: 209 GKSFAGADFEAGMMWREVYRLRQPVLLIWGREDRVNPLD-GALVALKTIPRAQLHVFGQC 267
Query: 279 GHAFNYEKPKEFYKHLKSFL 298
GH EK EF K FL
Sbjct: 268 GHWVQVEKFDEFNKLTIEFL 287
>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
Complex With Its Substrate Hopda
Length = 286
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 99/251 (39%), Gaps = 42/251 (16%)
Query: 68 NIIPHMIHYFNVYVPDLLFFGDS-FTTRPERSESFQAECVMRVMEAHSVKKLSLVGLSYG 126
N+ P + + V + D F S E+ A V +M+A + + LVG + G
Sbjct: 55 NVGPFVDAGYRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDIDRAHLVGNAMG 114
Query: 127 GFVGYSMAAQFKEKIEKVVICCSGVCLEEQDLRDRMFKVSDLEEAS---KILVPQSPGKL 183
G + A ++ ++I K+++ G L MF +E K+ S L
Sbjct: 115 GATALNFALEYPDRIGKLILMGPG------GLGPSMFAPMPMEGIKLLFKLYAEPSYETL 168
Query: 184 KELMRYTFFKRXXXXXXXXXXXXDYIDAMCTEYLEEKRELVRAIPKDRK----------- 232
K++++ + + + E L+ + E ++ P+ K
Sbjct: 169 KQMLQVFLYDQSL---------------ITEELLQGRWEAIQRQPEHLKNFLISAQKAPL 213
Query: 233 -----ISNIDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKP 287
+ + +I T I WG D+ PL+ G +L ++ D+A+L V K G +E
Sbjct: 214 STWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNI-DDARLHVFSKCGAWAQWEHA 272
Query: 288 KEFYKHLKSFL 298
EF + + FL
Sbjct: 273 DEFNRLVIDFL 283
>pdb|2XUA|A Chain A, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
pdb|2XUA|H Chain H, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
Length = 266
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Query: 33 DGSVMHCWVPKTRNDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFT 92
+G+ +H + R+ + P +VL + LG + L W + + +F V D G S
Sbjct: 10 NGTELHYRIDGERHGNAPWIVLSNSLGTD-LSXWAPQVAALSKHFRVLRYDTRGHGHSEA 68
Query: 93 TR-PERSESFQAECVMRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVVIC 147
+ P E + V+ + + + + + GLS GG G ++AA+ ++IE+V +C
Sbjct: 69 PKGPYTIEQLTGD-VLGLXDTLKIARANFCGLSXGGLTGVALAARHADRIERVALC 123
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 44 TRNDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDS----FTTRPERSE 99
R + P L+L+HG W+W+ +I + +++V VPDL FGDS + S
Sbjct: 24 VREGAGPTLLLLHGW-PGFWWEWSKVIGPLAEHYDVIVPDLRGFGDSEKPDLNDLSKYSL 82
Query: 100 SFQAECVMRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVVI 146
A+ +++A ++K +VG + V + ++ +++ K I
Sbjct: 83 DKAADDQAALLDALGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAI 129
>pdb|4ETW|A Chain A, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|C Chain C, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 264
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 12/118 (10%)
Query: 43 KTRNDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTTRPERSESFQ 102
+T+ LVL+HG G NA W I + +F +++ DL FG RS F
Sbjct: 7 QTKGQGNVHLVLLHGWGLNAE-VWRCIDEELSSHFTLHLVDLPGFG--------RSRGFG 57
Query: 103 AECVMRVMEA---HSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVVICCSGVCLEEQD 157
A + + EA + K +G + GG V +A E+++ +V S C +D
Sbjct: 58 ALSLADMAEAVLQQAPDKAIWLGWALGGLVASQIALTHPERVQALVTVASSPCFSARD 115
>pdb|1M33|A Chain A, Crystal Structure Of Bioh At 1.7 A
Length = 258
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 12/118 (10%)
Query: 43 KTRNDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTTRPERSESFQ 102
+T+ LVL+HG G NA W I + +F +++ DL FG RS F
Sbjct: 7 QTKGQGNVHLVLLHGWGLNAE-VWRCIDEELSSHFTLHLVDLPGFG--------RSRGFG 57
Query: 103 AECVMRVMEA---HSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVVICCSGVCLEEQD 157
A + EA + K +G S GG V +A E++ +V S C +D
Sbjct: 58 ALSLADXAEAVLQQAPDKAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARD 115
>pdb|3BDI|A Chain A, Crystal Structure Of Predicted Cib-Like Hydrolase
(Np_393672.1) From Thermoplasma Acidophilum At 1.45 A
Resolution
Length = 207
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 238 KITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKPKEFYKHLKSF 297
KI Q TL++WG D + P+ L + S + ++L +++ +GH EKP+EF + F
Sbjct: 145 KIRQKTLLVWGSKDHVVPIALSKEYASII-SGSRLEIVEGSGHPVYIEKPEEFVRITVDF 203
Query: 298 L 298
L
Sbjct: 204 L 204
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 77 FNVYVPDLLFFGDSFTTRP---ERSE-SFQAECVMRVMEAHSVKKLSLVGLSYGGFVGYS 132
+NVY PD FG S ++ +R + AE + ++A+ V + + G S GG
Sbjct: 57 YNVYAPDYPGFGRSASSEKYGIDRGDLKHAAEFIRDYLKANGVARSVIXGASXGGGXVIX 116
Query: 133 MAAQFKEKIEKVVICC 148
Q+ + ++ ++
Sbjct: 117 TTLQYPDIVDGIIAVA 132
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 235 NIDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKPKEFYKHL 294
++ KI PTL++ G+ DQI P E ++ + L A+L V K A H F ++ + L
Sbjct: 206 DMAKIDVPTLVIHGDGDQIVPFETTGKVAAELIKGAELKVYKDAPHGFAVTHAQQLNEDL 265
Query: 295 KSFL 298
+FL
Sbjct: 266 LAFL 269
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 235 NIDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKPKEFYKHL 294
++ KI PTL++ G+ DQI P E ++ + L A+L V K A H F ++ + L
Sbjct: 206 DMAKIDVPTLVIHGDGDQIVPFETTGKVAAELIKGAELKVYKDAPHGFAVTHAQQLNEDL 265
Query: 295 KSFL 298
+FL
Sbjct: 266 LAFL 269
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 235 NIDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKPKEFYKHL 294
++ KI PTL++ G+ DQI P E ++ + L A+L V K A H F ++ + L
Sbjct: 206 DMAKIDVPTLVIHGDGDQIVPFETTGKVAAELIKGAELKVYKDAPHGFAVTHAQQLNEDL 265
Query: 295 KSFL 298
+FL
Sbjct: 266 LAFL 269
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 235 NIDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKPKEFYKHL 294
++ KI PTL++ G+ DQI P E ++ + L A+L V K A H F ++ + L
Sbjct: 206 DMAKIDVPTLVIHGDGDQIVPFETTGKVAAELIKGAELKVYKDAPHGFAVTHAQQLNEDL 265
Query: 295 KSFL 298
+FL
Sbjct: 266 LAFL 269
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 235 NIDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKPKEFYKHL 294
++ KI PTL++ G+ DQI P E ++ + L A+L V K A H F ++ + L
Sbjct: 206 DMAKIDVPTLVIHGDGDQIVPFETTGKVAAELIKGAELKVYKDAPHGFAVTHAQQLNEDL 265
Query: 295 KSFL 298
+FL
Sbjct: 266 LAFL 269
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 103/260 (39%), Gaps = 12/260 (4%)
Query: 48 SKPDLVLIHGLGANALWQWTNIIPHMIHY-FNVYVPDLLFFGDSFTTRPERS---ESFQA 103
KP +VLIHG + W +P ++ + V D FG S ++P ++F +
Sbjct: 27 GKP-VVLIHGWPLSGR-SWEYQVPALVEAGYRVITYDRRGFGKS--SQPWEGYEYDTFTS 82
Query: 104 ECVMRVMEAHSVKKLSLVGLSYGGF-VGYSMAAQFKEKIEKVVICCS--GVCLEEQDLRD 160
+ + + ++ ++LVG S GG V ++ ++IEKVV + + +D +
Sbjct: 83 DLHQLLEQL-ELQNVTLVGFSXGGGEVARYISTYGTDRIEKVVFAGAVPPYLYKSEDHPE 141
Query: 161 RMFKVSDLEEASKILVPQSPGKLKELMRYTFFKRXXXXXXXXXXXXDYIDAMCTEYLEEK 220
+ +E ++ L E + F D +
Sbjct: 142 GALDDATIETFKSGVINDRLAFLDEFTKGFFAAGDRTDLVSESFRLYNWDIAAGASPKGT 201
Query: 221 RELVRAIPKDRKISNIDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGH 280
+ + A K +++K PTLI+ G+ D P E +L N+++ +IK H
Sbjct: 202 LDCITAFSKTDFRKDLEKFNIPTLIIHGDSDATVPFEYSGKLTHEAIPNSKVALIKGGPH 261
Query: 281 AFNYEKPKEFYKHLKSFLLD 300
N KEF + L FL D
Sbjct: 262 GLNATHAKEFNEALLLFLKD 281
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 96/227 (42%), Gaps = 39/227 (17%)
Query: 76 YFNVYVPDLLFFGDSFTTRPERSESFQAECVMRVMEAHSVKKLSLVGLSYGGFVGYSMAA 135
Y + PD F D F ER A+ + +M+A KK+SL+G S GG AA
Sbjct: 62 YGHSRPPDRDFPADFF----ERD----AKDAVDLMKALKFKKVSLLGWSNGGITALIAAA 113
Query: 136 QFKEKIEKVVICCSGVCLEEQD--LRDRMFKVSDLEEASKILVPQSPGKLKELMRYTFFK 193
++ I K+VI + + ++D + + + VS E ++ L+ L Y +F
Sbjct: 114 KYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSKWSERTR-------KPLEALYGYDYFA 166
Query: 194 RXXXXXXXXXXXXDYIDAMCTEYLEEKRELVRAIPKDRKISN--IDKITQPTLILWGEHD 251
R C ++++ R+ + +P D I + ++ P LI+ GE D
Sbjct: 167 R-----------------TCEKWVDGIRQF-KHLP-DGNICRHLLPRVQCPALIVHGEKD 207
Query: 252 QIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKPKEFYKHLKSFL 298
+ P + H+ ++L ++ + H + EF K + FL
Sbjct: 208 PLVPRFHADFIHKHV-KGSRLHLMPEGKHNLHLRFADEFNKLAEDFL 253
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 96/227 (42%), Gaps = 39/227 (17%)
Query: 76 YFNVYVPDLLFFGDSFTTRPERSESFQAECVMRVMEAHSVKKLSLVGLSYGGFVGYSMAA 135
Y + PD F D F ER A+ + +M+A KK+SL+G S GG AA
Sbjct: 62 YGHSRPPDRDFPADFF----ERD----AKDAVDLMKALKFKKVSLLGWSDGGITALIAAA 113
Query: 136 QFKEKIEKVVICCSGVCLEEQD--LRDRMFKVSDLEEASKILVPQSPGKLKELMRYTFFK 193
++ I K+VI + + ++D + + + VS E ++ L+ L Y +F
Sbjct: 114 KYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSKWSERTR-------KPLEALYGYDYFA 166
Query: 194 RXXXXXXXXXXXXDYIDAMCTEYLEEKRELVRAIPKDRKISN--IDKITQPTLILWGEHD 251
R C ++++ R+ + +P D I + ++ P LI+ GE D
Sbjct: 167 R-----------------TCEKWVDGIRQF-KHLP-DGNICRHLLPRVQCPALIVHGEKD 207
Query: 252 QIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKPKEFYKHLKSFL 298
+ P + H+ ++L ++ + H + EF K + FL
Sbjct: 208 PLVPRFHADFIHKHV-KGSRLHLMPEGKHNLHLRFADEFNKLAEDFL 253
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 87/219 (39%), Gaps = 32/219 (14%)
Query: 99 ESFQAECVMRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVVICCSGVCLE---- 154
+ F A C A +++ ++G S+GG +G +A + + + IC S +
Sbjct: 114 DEFHAVCT-----ALGIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICNSPASMRLWSE 168
Query: 155 -EQDLRDRMFKVS----DLEEASKILVPQSPGKLKELMRYTFFKRXXXXXXXXXXXXDYI 209
DLR ++ + D EA+ + P L+ F++R D+
Sbjct: 169 AAGDLRAQLPAETRAALDRHEAAGTIT--HPDYLQAAAE--FYRRHVCRVVPTPQ--DFA 222
Query: 210 DAMCTEYLEEKRELVRAIPKDRKI-------SNIDK---ITQPTLILWGEHDQIFPLELG 259
D++ E P + + S ID+ +T P L++ GEHD+ P +
Sbjct: 223 DSVAQMEAEPTVYHTMNGPNEFHVVGTLGDWSVIDRLPDVTAPVLVIAGEHDEATP-KTW 281
Query: 260 RRLKSHLGDNAQLIVIKKAGHAFNYEKPKEFYKHLKSFL 298
+ H+ D + V H + EKP+EF + FL
Sbjct: 282 QPFVDHIPD-VRSHVFPGTSHCTHLEKPEEFRAVVAQFL 319
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 96/227 (42%), Gaps = 39/227 (17%)
Query: 76 YFNVYVPDLLFFGDSFTTRPERSESFQAECVMRVMEAHSVKKLSLVGLSYGGFVGYSMAA 135
Y + PD F D F ER A+ + +M+A KK+SL+G + GG AA
Sbjct: 62 YGHSRPPDRDFPADFF----ERD----AKDAVDLMKALKFKKVSLLGWADGGITALIAAA 113
Query: 136 QFKEKIEKVVICCSGVCLEEQD--LRDRMFKVSDLEEASKILVPQSPGKLKELMRYTFFK 193
++ I K+VI + + ++D + + + VS E ++ L+ L Y +F
Sbjct: 114 KYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSKWSERTR-------KPLEALYGYDYFA 166
Query: 194 RXXXXXXXXXXXXDYIDAMCTEYLEEKRELVRAIPKDRKISN--IDKITQPTLILWGEHD 251
R C ++++ R+ + +P D I + ++ P LI+ GE D
Sbjct: 167 R-----------------TCEKWVDGIRQF-KHLP-DGNICRHLLPRVQCPALIVHGEKD 207
Query: 252 QIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKPKEFYKHLKSFL 298
+ P + H+ ++L ++ + H + EF K + FL
Sbjct: 208 PLVPRFHADFIHKHV-KGSRLHLMPEGKHNLHLRFADEFNKLAEDFL 253
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 53/265 (20%), Positives = 99/265 (37%), Gaps = 28/265 (10%)
Query: 46 NDSKPDLVLIHGLG-ANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTTRPERSESFQAE 104
N + +V I G G A W PH + F + F + E +E F +
Sbjct: 40 NGTGDPVVFIAGRGGAGRTWH-----PHQVPAFLAAGYRCITFDNRGIGATENAEGFTTQ 94
Query: 105 CVMR----VMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVVICCSGVCLEEQDLRD 160
++ ++E + +VG+S G F+ + E + V+ + L+ R
Sbjct: 95 TMVADTAALIETLDIAPARVVGVSMGAFIAQELMVVAPELVSSAVLMATRGRLD----RA 150
Query: 161 RMF---KVSDLEEASKILVPQSPGKLKELMRYTFFKRXXXXXXXXXXXXDYIDAMCTEYL 217
R F ++L ++ L P + + L ++ D+I AM + +
Sbjct: 151 RQFFNKAEAELYDSGVQLPPTYDARARLLENFS-----RKTLNDDVAVGDWI-AMFSMWP 204
Query: 218 EEKRELVRA----IPKDRKISNIDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLI 273
+ +R P+ ++ I P L++ D + P LGR + L N + +
Sbjct: 205 IKSTPGLRCQLDCAPQTNRLPAYRNIAAPVLVIGFADDVVTPPYLGREVADAL-PNGRYL 263
Query: 274 VIKKAGHAFNYEKPKEFYKHLKSFL 298
I AGH +E+P+ + F
Sbjct: 264 QIPDAGHLGFFERPEAVNTAMLKFF 288
>pdb|1Q0R|A Chain A, Crystal Structure Of Aclacinomycin Methylesterase (Rdmc)
With Bound Product Analogue, 10-
Decarboxymethylaclacinomycin T (Dcmat)
pdb|1Q0Z|A Chain A, Crystal Structure Of Aclacinomycin Methylesterase (rdmc)
With Bound Product Analogue, 10-
Decarboxymethylaclacinomycin A (dcma)
Length = 298
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 80/230 (34%), Gaps = 29/230 (12%)
Query: 91 FTTRPERSESFQAECVMRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVVICCSG 150
F P A+ V V++ V + +VGLS G + +A +++ + + G
Sbjct: 70 FAAHPYGFGELAADAVA-VLDGWGVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGG 128
Query: 151 VCLEEQDLRDRMFKVSDLEEA-SKILVPQSP-------------GKLKELMRYTFFKRXX 196
+ D + +V E + PQ P G+ E+ + R
Sbjct: 129 GL--DIDFDANIERVMRGEPTLDGLPGPQQPFLDALALMNQPAEGRAAEVAKRVSKWRIL 186
Query: 197 XXXXXXXXXXDY-------IDAMCTEYLEEKRELVRAIPKDRKISNIDKITQPTLILWGE 249
+Y ID E +P + + + ++T PTL++ E
Sbjct: 187 SGTGVPFDDAEYARWEERAIDHAGGVLAEPYAHYSLTLPPPSRAAELREVTVPTLVIQAE 246
Query: 250 HDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKPKEFYKHLKSFLL 299
HD I P G+ L L A+L I GHA P + L +L
Sbjct: 247 HDPIAPAPHGKHLAG-LIPTARLAEIPGMGHAL----PSSVHGPLAEVIL 291
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 41 VPKTRNDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSF-TTRPERSE 99
V ++ + P L++IHG ++ + + + V PDL G S P+RS
Sbjct: 17 VRESEGEGAP-LLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSY 75
Query: 100 SFQ--AECVMRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVVICCSGVCLEE 155
S + A+ + VM+ + + G S GG +G M A++ E ++ V EE
Sbjct: 76 SMEGYADAMTEVMQQLGIADAVVFGWSLGGHIGIEMIARYPEMRGLMITGTPPVAREE 133
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 41 VPKTRNDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSF-TTRPERSE 99
V ++ + P L++IHG ++ + + + V PDL G S P+RS
Sbjct: 17 VRESEGEGAP-LLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSY 75
Query: 100 SFQ--AECVMRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVVICCSGVCLEE 155
S + A+ + VM+ + + G S GG +G M A++ E ++ V EE
Sbjct: 76 SMEGYADAMTEVMQQLGIADAVVFGWSLGGHIGIEMIARYPEMRGLMITGTPPVAREE 133
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 7/124 (5%)
Query: 23 GFRSSVTDLQDGSVMHCWVPKTRNDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVP 82
GF S+ ++ DG +H + P ++L+HG G ++W ++P + F V P
Sbjct: 9 GFESAYREV-DGVKLHY----VKGGQGPLVMLVHGFG-QTWYEWHQLMPELAKRFTVIAP 62
Query: 83 DLLFFGDSFTTRPERSESFQAECVMRVMEAHSV-KKLSLVGLSYGGFVGYSMAAQFKEKI 141
DL G S + S A + ++ S + LV G + Y M + + I
Sbjct: 63 DLPGLGQSEPPKTGYSGEQVAVYLHKLARQFSPDRPFDLVAHDIGIWNTYPMVVKNQADI 122
Query: 142 EKVV 145
++V
Sbjct: 123 ARLV 126
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 7/124 (5%)
Query: 23 GFRSSVTDLQDGSVMHCWVPKTRNDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVP 82
GF S+ ++ DG +H + P ++L+HG G ++W ++P + F V P
Sbjct: 9 GFESAYREV-DGVKLHY----VKGGQGPLVMLVHGFG-QTWYEWHQLMPELAKRFTVIAP 62
Query: 83 DLLFFGDSFTTRPERSESFQAECVMRVMEAHSV-KKLSLVGLSYGGFVGYSMAAQFKEKI 141
DL G S + S A + ++ S + LV G + Y M + + I
Sbjct: 63 DLPGLGQSEPPKTGYSGEQVAVYLHKLARQFSPDRPFDLVAHDIGIWNTYPMVVKNQADI 122
Query: 142 EKVV 145
++V
Sbjct: 123 ARLV 126
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 7/124 (5%)
Query: 23 GFRSSVTDLQDGSVMHCWVPKTRNDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVP 82
GF S+ ++ DG +H + P ++L+HG G ++W ++P + F V P
Sbjct: 9 GFESAYREV-DGVKLHY----VKGGQGPLVMLVHGFG-QTWYEWHQLMPELAKRFTVIAP 62
Query: 83 DLLFFGDSFTTRPERSESFQAECVMRVMEAHSV-KKLSLVGLSYGGFVGYSMAAQFKEKI 141
DL G S + S A + ++ S + LV G + Y M + + I
Sbjct: 63 DLPGLGQSEPPKTGYSGEQVAVYLHKLARQFSPDRPFDLVAHDIGIWNTYPMVVKNQADI 122
Query: 142 EKVV 145
++V
Sbjct: 123 ARLV 126
>pdb|3FSG|A Chain A, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|B Chain B, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|C Chain C, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 54/263 (20%), Positives = 108/263 (41%), Gaps = 29/263 (11%)
Query: 48 SKPDLVLIHGLGANALWQWTNI----IPHMIHYFNVYVPDLLFFGDSFTTRPERSESFQA 103
S ++ +HGL + Q T + + ++ Y +Y+ DL G+S P S++
Sbjct: 20 SGTPIIFLHGLSLDK--QSTXLFFEPLSNVGQYQRIYL-DLPGXGNSDPISPSTSDNVLE 76
Query: 104 ECVMRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVVICCSGVCLEEQDLRDRMF 163
+ + E ++ L G SYGG++ ++A K++ V + C V + R
Sbjct: 77 TLIEAIEEIIGARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCP-VITADHSKRLTGK 135
Query: 164 KVSDLEEASKILVPQSPGKLKELMRYTFFKRXXXXXXXXXXXX--DYIDAMCTEYLEEKR 221
++ LEE +P + KE +F DY + + +E +
Sbjct: 136 HINILEEDI------NPVENKE-----YFADFLSXNVIINNQAWHDYQNLIIPGLQKEDK 184
Query: 222 ELVRAIPKD------RKISNIDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVI 275
+ + + K+ NI+ P I G +DQ+ + +L +H +N +++++
Sbjct: 185 TFIDQLQNNYSFTFEEKLKNIN-YQFPFKIXVGRNDQVVGYQEQLKLINH-NENGEIVLL 242
Query: 276 KKAGHAFNYEKPKEFYKHLKSFL 298
+ GH ++ + H FL
Sbjct: 243 NRTGHNLXIDQREAVGFHFDLFL 265
>pdb|3FSG|D Chain D, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 50/260 (19%), Positives = 106/260 (40%), Gaps = 23/260 (8%)
Query: 48 SKPDLVLIHGLGAN--ALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTTRPERSESFQAEC 105
S ++ +HGL + + + + ++ Y +Y+ DL G+S P S++
Sbjct: 20 SGTPIIFLHGLSLDKQSTCLFFEPLSNVGQYQRIYL-DLPGXGNSDPISPSTSDNVLETL 78
Query: 106 VMRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVVICCSGVCLEEQDLRDRMFKV 165
+ + E ++ L G SYGG++ ++A K++ V + C V + R +
Sbjct: 79 IEAIEEIIGARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCP-VITADHSKRLTGKHI 137
Query: 166 SDLEEASKILVPQSPGKLKELMRYTFFKRXXXXXXXXXXXX--DYIDAMCTEYLEEKREL 223
+ LEE +P + KE +F DY + + +E +
Sbjct: 138 NILEEDI------NPVENKE-----YFADFLSXNVIINNQAWHDYQNLIIPGLQKEDKTF 186
Query: 224 VRAIPKDRKISNIDKITQ-----PTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKA 278
+ + + + +K+ P I G +DQ+ + +L +H +N +++++ +
Sbjct: 187 IDQLQNNYSFTFEEKLKNINYQFPFKIXVGRNDQVVGYQEQLKLINH-NENGEIVLLNRT 245
Query: 279 GHAFNYEKPKEFYKHLKSFL 298
GH ++ + H FL
Sbjct: 246 GHNLXIDQREAVGFHFDLFL 265
>pdb|1IMJ|A Chain A, Crystal Structure Of The Human Ccg1/tafii250-interacting
Factor B (cib)
Length = 210
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 234 SNIDKITQPTLILWGEHDQIFPLELGRRLKSHLGD--NAQLIVIKKAGHAFNYEKPKEFY 291
+N + P LI++G+ D +G+ HL N +++++K AGH +KP+E++
Sbjct: 145 ANYASVKTPALIVYGDQD-----PMGQTSFEHLKQLPNHRVLIMKGAGHPCYLDKPEEWH 199
Query: 292 KHLKSFL 298
L FL
Sbjct: 200 TGLLDFL 206
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query: 41 VPKTRNDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSF-TTRPERSE 99
V ++ + P L++IHG ++ + + + V PDL G S P+RS
Sbjct: 17 VRESEGEGAP-LLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSY 75
Query: 100 SFQ--AECVMRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVVICCSGVCLEE 155
S + A+ + VM+ + + G GG +G M A++ E ++ V EE
Sbjct: 76 SMEGYADAMTEVMQQLGIADAVVFGWGLGGHIGIEMIARYPEMRGLMITGTPPVAREE 133
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 34 GSVMHCWVPKTRNDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTT 93
G MH +V D P L L HG + + W NIIPH+ PDL+ G S
Sbjct: 19 GERMH-YVDVGPRDGTPVLFL-HG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS--D 73
Query: 94 RPERSESF--QAECVMRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVV 145
+P+ F + +EA ++++ LV +G +G+ A + E+++ +
Sbjct: 74 KPDLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIA 127
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 34 GSVMHCWVPKTRNDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTT 93
G MH +V D P ++ +HG + + W NIIPH+ PDL+ G S
Sbjct: 19 GERMH-YVDVGPRDGTP-VLFLHG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS--D 73
Query: 94 RPERSESF--QAECVMRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVV 145
+P+ F + +EA ++++ LV +G +G+ A + E+++ +
Sbjct: 74 KPDLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIA 127
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 34 GSVMHCWVPKTRNDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTT 93
G MH +V D P ++ +HG + + W NIIPH+ PDL+ G S
Sbjct: 19 GERMH-YVDVGPRDGTP-VLFLHG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS--D 73
Query: 94 RPERSESF--QAECVMRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVV 145
+P+ F + +EA ++++ LV +G +G+ A + E+++ +
Sbjct: 74 KPDLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIA 127
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 34.3 bits (77), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 34 GSVMHCWVPKTRNDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTT 93
G MH +V D P ++ +HG + + W NIIPH+ PDL+ G S
Sbjct: 19 GERMH-YVDVGPRDGTP-VLFLHG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS--D 73
Query: 94 RPERSESF--QAECVMRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVV 145
+P+ F + +EA ++++ LV +G +G+ A + E+++ +
Sbjct: 74 KPDLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIA 127
>pdb|3QVM|A Chain A, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
pdb|3QVM|B Chain B, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
Length = 282
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 88/235 (37%), Gaps = 14/235 (5%)
Query: 52 LVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFG----DSFTTRPERSESFQAECVM 107
++L HG G + W +P + F V V D + G +SF+T+ S A+ V
Sbjct: 31 VLLAHGFGCDQ-NXWRFXLPELEKQFTVIVFDYVGSGQSDLESFSTKRYSSLEGYAKDVE 89
Query: 108 RVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVVICCSGVCLEE--QDLRDRMFKV 165
++ A + +S++G S + + ++I + C C D F+
Sbjct: 90 EILVALDLVNVSIIGHSVSSIIAGIASTHVGDRISDITXICPSPCFXNFPPDYVGG-FER 148
Query: 166 SDLEEASKILVPQSPGKLKELMRYTFFKRXXXXXXXXXXXXDYIDAMCTEYLEEKRELVR 225
DLEE + G L + + CT + +
Sbjct: 149 DDLEELINLXDKNYIGWANYLAPLV-----XGASHSSELIGELSGSFCTTDPIVAKTFAK 203
Query: 226 AIPKDRKISNIDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGH 280
A S ++ I+ P LI D + E+G+ ++ N+QL +I+ GH
Sbjct: 204 ATFFSDYRSLLEDISTPALIFQSAKDSLASPEVGQYXAENI-PNSQLELIQAEGH 257
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 34 GSVMHCWVPKTRNDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTT 93
G MH +V D P L L HG + + W NIIPH+ PDL+ G S
Sbjct: 19 GERMH-YVDVGPRDGTPVLFL-HG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS--D 73
Query: 94 RPERSESF--QAECVMRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVV 145
+P+ F + +EA ++++ LV +G +G+ A + E+++ +
Sbjct: 74 KPDLDYFFDDHVRYLDAFIEAVGLEEVVLVIHDWGSALGFHWAKRNPERVKGIA 127
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 34 GSVMHCWVPKTRNDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTT 93
G MH +V D P ++ +HG + + W NIIPH+ PDL+ G S
Sbjct: 16 GERMH-YVDVGPRDGTP-VLFLHG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS--D 70
Query: 94 RPERSESF--QAECVMRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVV 145
+P+ F + +EA ++++ LV +G +G+ A + E+++ +
Sbjct: 71 KPDLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIA 124
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 34 GSVMHCWVPKTRNDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTT 93
G MH +V D P ++ +HG + + W NIIPH+ PDL+ G S
Sbjct: 19 GERMH-YVDVGPRDGTP-VLFLHG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS--D 73
Query: 94 RPERSESF--QAECVMRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVV 145
+P+ F + +EA ++++ LV +G +G+ A + E+++ +
Sbjct: 74 KPDLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIA 127
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 34 GSVMHCWVPKTRNDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTT 93
G MH +V D P ++ +HG + + W NIIPH+ PDL+ G S
Sbjct: 19 GERMH-YVDVGPRDGTP-VLFLHG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS--D 73
Query: 94 RPERSESF--QAECVMRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVV 145
+P+ F + +EA ++++ LV +G +G+ A + E+++ +
Sbjct: 74 KPDLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIA 127
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 34 GSVMHCWVPKTRNDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTT 93
G MH +V D P L L HG + + W NIIPH+ PDL+ G S
Sbjct: 16 GERMH-YVDVGPRDGTPVLFL-HG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS--D 70
Query: 94 RPERSESF--QAECVMRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVV 145
+P+ F + +EA ++++ LV +G +G+ A + E+++ +
Sbjct: 71 KPDLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIA 124
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 34 GSVMHCWVPKTRNDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTT 93
G MH +V D P ++ +HG + + W NIIPH+ PDL+ G S
Sbjct: 19 GERMH-YVDVGPRDGTP-VLFLHG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS--D 73
Query: 94 RPERSESF--QAECVMRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVV 145
+P+ F + +EA ++++ LV +G +G+ A + E+++ +
Sbjct: 74 KPDLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIA 127
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 34 GSVMHCWVPKTRNDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTT 93
G MH +V D P ++ +HG + + W NIIPH+ PDL+ G S
Sbjct: 19 GERMH-YVDVGPRDGTP-VLFLHG-NPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS--D 73
Query: 94 RPERSESF--QAECVMRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVV 145
+P+ F + +EA ++++ LV +G +G+ A + E+++ +
Sbjct: 74 KPDLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIA 127
>pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
pdb|2QZP|B Chain B, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
Length = 562
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 210 DAMCTEYLEEKRELVRAIPKDRK-ISNIDKITQPTLILWGEHDQIFPLELGRRLKSHL-- 266
DA ++E+ R I + R I+++D+I +P ++ ++D PL+ RL L
Sbjct: 462 DAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSRTPLKPLLRLMGELLA 521
Query: 267 -GDNAQLIVIKKAGHAFN 283
G + +I AGHA N
Sbjct: 522 RGKTFEAHIIPDAGHAIN 539
>pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU8|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
Length = 582
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 210 DAMCTEYLEEKRELVRAIPKDRK-ISNIDKITQPTLILWGEHDQIFPLELGRRLKSHL-- 266
DA ++E+ R I + R I+++D+I +P ++ ++D PL+ RL L
Sbjct: 482 DAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSRTPLKPLLRLMGELLA 541
Query: 267 -GDNAQLIVIKKAGHAFN 283
G + +I AGHA N
Sbjct: 542 RGKTFEAHIIPDAGHAIN 559
>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE6|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE7|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|1VE7|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|2HU5|A Chain A, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU5|B Chain B, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU7|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU7|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|3O4G|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 210 DAMCTEYLEEKRELVRAIPKDRK-ISNIDKITQPTLILWGEHDQIFPLELGRRLKSHL-- 266
DA ++E+ R I + R I+++D+I +P ++ ++D PL+ RL L
Sbjct: 482 DAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSRTPLKPLLRLMGELLA 541
Query: 267 -GDNAQLIVIKKAGHAFN 283
G + +I AGHA N
Sbjct: 542 RGKTFEAHIIPDAGHAIN 559
>pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
pdb|2QR5|B Chain B, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
Length = 582
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 210 DAMCTEYLEEKRELVRAIPKDRK-ISNIDKITQPTLILWGEHDQIFPLELGRRLKSHL-- 266
DA ++E+ R I + R I+++D+I +P ++ ++D PL+ RL L
Sbjct: 482 DAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSRTPLKPLLRLMGELLA 541
Query: 267 -GDNAQLIVIKKAGHAFN 283
G + +I AGHA N
Sbjct: 542 RGKTFEAHIIPDAGHAIN 559
>pdb|2XMZ|A Chain A, Structure Of Menh From S. Aureus
Length = 269
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 238 KITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKPKEFYKHLKSF 297
+I PTLIL GE+D+ F +++ +++ ++L N++ +I GH + E EF + F
Sbjct: 205 EIKVPTLILAGEYDEKF-VQIAKKM-ANLIPNSKCKLISATGHTIHVEDSDEFDTMILGF 262
Query: 298 L 298
L
Sbjct: 263 L 263
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 211 AMCTEYLEEKRELVRAIPKDRKISNIDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNA 270
A+ ++E+ R V A+ K PTLIL G D I P++ R A
Sbjct: 199 AVVPAWIEDFRSDVEAVRAAGK---------PTLILHGTKDNILPIDATARRFHQAVPEA 249
Query: 271 QLIVIKKAGHAFNYEKPKEFYKHLKSFL 298
+ ++ A H + E LK+FL
Sbjct: 250 DYVEVEGAPHGLLWTHADEVNAALKTFL 277
>pdb|4DGQ|A Chain A, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|B Chain B, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|C Chain C, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
Length = 280
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%)
Query: 234 SNIDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKPKEFYKH 293
+++ IT P L++ G+ DQ+ P L + L N +LI K A H +
Sbjct: 214 NDLKGITIPVLVIHGDDDQVVPYADSGVLSAKLVKNGKLITYKGAPHGIPTTHADKVNAD 273
Query: 294 LKSFL 298
L FL
Sbjct: 274 LLEFL 278
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 50 PDLVLIHGLGANAL-WQWTNIIPHMIHYFNVYVPDLLFFGDSFTTRPERSESFQAECVM- 107
P ++ IHG+ L WQ +P + V PDL FG ++ E S+ + +
Sbjct: 27 PVVLCIHGILEQGLAWQEV-ALPLAAQGYRVVAPDL--FGHGRSSHLEMVTSYSSLTFLA 83
Query: 108 ---RVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVVIC 147
RV++ + L LVG S G + ++A+ +KI+++++
Sbjct: 84 QIDRVIQELPDQPLLLVGHSMGAMLATAIASVRPKKIKELILV 126
>pdb|1A8Q|A Chain A, Bromoperoxidase A1
Length = 274
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 235 NIDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHA 281
++ K PTL++ G+ DQ+ P++ R + + NA+L V + + H
Sbjct: 207 DLKKFDIPTLVVHGDDDQVVPIDATGRKSAQIIPNAELKVYEGSSHG 253
>pdb|2R11|A Chain A, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|B Chain B, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|C Chain C, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|D Chain D, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
Length = 306
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 47 DSKPDLVLIHGLGANALWQWTNIIPHMIHY---FNVYVPDLLFFGDSFTTRPER---SES 100
+ P LVL+HG AL+ T P++ + + Y D++ GD + PE + +
Sbjct: 65 EDAPPLVLLHG----ALFSSTXWYPNIADWSSKYRTYAVDII--GDKNKSIPENVSGTRT 118
Query: 101 FQAECVMRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVVICC 148
A ++ V + ++K +GLS GG + + E+++ I
Sbjct: 119 DYANWLLDVFDNLGIEKSHXIGLSLGGLHTXNFLLRXPERVKSAAILS 166
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 242 PTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKPKEFYKHLKSFL 298
P L+L GEH+ I+ S + + VIK AGH + E+P + + F
Sbjct: 248 PILLLLGEHEVIYDPHSALHRASSFVPDIEAEVIKNAGHVLSXEQPTYVNERVXRFF 304
>pdb|4IH4|A Chain A, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|B Chain B, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|C Chain C, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|D Chain D, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
Length = 267
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 242 PTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKPKEFYKHLKSFL 298
PT ++ D P + L+SHLG + + +K GH P + + L+ L
Sbjct: 209 PTCVIQTAKDVSVPASVAEYLRSHLGGDTTVETLKTEGHLPQLSAPAQLAQFLRRAL 265
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 234 SNIDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKPKEFYKH 293
++I +I P LIL G D+ P+E R+ +A+ + ++ A H + +E
Sbjct: 211 ADIPRIDVPALILHGTGDRTLPIENTARVFHKALPSAEYVEVEGAPHGLLWTHAEEVNTA 270
Query: 294 LKSFL 298
L +FL
Sbjct: 271 LLAFL 275
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 234 SNIDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKPKEFYKH 293
++I +I P LIL G D+ P+E R+ +A+ + ++ A H + +E
Sbjct: 211 ADIPRIDVPALILHGTGDRTLPIENTARVFHKALPSAEYVEVEGAPHGLLWTHAEEVNTA 270
Query: 294 LKSFL 298
L +FL
Sbjct: 271 LLAFL 275
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 234 SNIDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKPKEFYKH 293
++I +I P LIL G D+ P+E R+ +A+ + ++ A H + +E
Sbjct: 211 ADIPRIDVPALILHGTGDRTLPIENTARVFHKALPSAEYVEVEGAPHGLLWTHAEEVNTA 270
Query: 294 LKSFL 298
L +FL
Sbjct: 271 LLAFL 275
>pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 210 DAMCTEYLEEKRELVRAIPKDRK-ISNIDKITQPTLILWGEHDQIFPLELGRRLKSHL-- 266
DA ++E+ R I + R I+++D+I +P ++ +++ PL+ RL L
Sbjct: 482 DAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNNSRTPLKPLLRLMGELLA 541
Query: 267 -GDNAQLIVIKKAGHAFN 283
G + +I AGHA N
Sbjct: 542 RGKTFEAHIIPDAGHAIN 559
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 66 WTNIIPHMIHYF-----NVYVPDLLFFGDSFTTRPERSESFQ--AECVMRVMEAHSVKKL 118
W+ + MI F V PD FG S E +F+ ++ ++E ++ +
Sbjct: 59 WSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNI 118
Query: 119 SLVGLSYGGFVGYSMAAQFKEKIEKVVICCSGVCL 153
+LV +GGF+G ++ + ++++I CL
Sbjct: 119 TLVVQDWGGFLGLTLPMADPSRFKRLIIM--NACL 151
>pdb|2ES4|A Chain A, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|2ES4|B Chain B, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|1CVL|A Chain A, Crystal Structure Of Bacterial Lipase From Chromobacterium
Viscosum Atcc 6918
Length = 319
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 12/102 (11%)
Query: 52 LVLIHGLG-----ANALWQWTNIIPHM-IHYFNVYVPDLLFF--GDSFTTRPERSESFQA 103
++L+HGL AN + W I + H VYV +L F D R E+ ++
Sbjct: 11 VILVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYVANLSGFQSDDGPNGRGEQLLAY-- 68
Query: 104 ECVMRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVV 145
V +V+ A K++L+G S GG +AA + + V
Sbjct: 69 --VKQVLAATGATKVNLIGHSQGGLTSRYVAAVAPQLVASVT 108
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 66 WTNIIPHMIHYF-----NVYVPDLLFFGDSFTTRPERSESFQ--AECVMRVMEAHSVKKL 118
W+ + MI F V PD FG S E +F+ ++ ++E ++ +
Sbjct: 59 WSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNI 118
Query: 119 SLVGLSYGGFVGYSMAAQFKEKIEKVVICCSGVCL 153
+LV +GGF+G ++ + ++++I CL
Sbjct: 119 TLVVQDWGGFLGLTLPMADPSRFKRLIIM--NACL 151
>pdb|1TAH|B Chain B, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|A Chain A, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|C Chain C, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|D Chain D, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
Length = 318
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 12/102 (11%)
Query: 52 LVLIHGLG-----ANALWQWTNIIPHM-IHYFNVYVPDLLFF--GDSFTTRPERSESFQA 103
++L+HGL AN + W I + H VYV +L F D R E+ ++
Sbjct: 10 VILVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYVANLSGFQSDDGPNGRGEQLLAY-- 67
Query: 104 ECVMRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVV 145
V +V+ A K++L+G S GG +AA + + V
Sbjct: 68 --VKQVLAATGATKVNLIGHSQGGLTSRYVAAVAPQLVASVT 107
>pdb|3TRD|A Chain A, Structure Of An Alpha-Beta Serine Hydrolase Homologue From
Coxiella Burnetii
Length = 208
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 208 YIDAMCTEYLEEKRELVRAIPKD--RKISNIDKITQPTLILWGEHDQIFPLELGRRLKSH 265
YI A Y ++ +L+ P +++ ++ P LI+ G+ D++ P E + +
Sbjct: 117 YISAKVA-YDQKVAQLISVAPPVFYEGFASLTQMASPWLIVQGDQDEVVPFEQVKAFVNQ 175
Query: 266 LGDNAQLIVIKKAGHAFN 283
+ + +V+ A H F+
Sbjct: 176 ISSPVEFVVMSGASHFFH 193
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%)
Query: 224 VRAIPKDRKISNIDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFN 283
++A + ++ KI PTL++ G+ DQ+ P+E + L + L + A H
Sbjct: 197 IKAFSETDFTEDLKKIDVPTLVVHGDADQVVPIEASGIASAALVKGSTLKIYSGAPHGLT 256
Query: 284 YEKPKEFYKHLKSFL 298
+ L +F+
Sbjct: 257 DTHKDQLNADLLAFI 271
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 66 WTNIIPHMIHYF-----NVYVPDLLFFGDSFTTRPERSESFQ--AECVMRVMEAHSVKKL 118
W+ + MI F V PD FG S E +F+ ++ ++E ++ +
Sbjct: 59 WSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNI 118
Query: 119 SLVGLSYGGFVGYSMAAQFKEKIEKVVICCSGVCL 153
+LV +GGF+G ++ + ++++I CL
Sbjct: 119 TLVVQDWGGFLGLTLPMADPSRFKRLIIM--NACL 151
>pdb|1WOM|A Chain A, Crystal Structure Of Rsbq
pdb|1WOM|B Chain B, Crystal Structure Of Rsbq
pdb|1WPR|A Chain A, Crystal Structure Of Rsbq Inhibited By Pmsf
pdb|1WPR|B Chain B, Crystal Structure Of Rsbq Inhibited By Pmsf
Length = 271
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 235 NIDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKPKEFYKHL 294
++ K+T P+LIL D I P +G+ + HL + L ++ GH + P E + +
Sbjct: 205 DLSKVTVPSLILQCADDIIAPATVGKYMHQHL-PYSSLKQMEARGHCPHMSHPDETIQLI 263
Query: 295 KSFL 298
+L
Sbjct: 264 GDYL 267
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 66 WTNIIPHMIHYF-----NVYVPDLLFFGDSFTTRPERSESFQ--AECVMRVMEAHSVKKL 118
W+ + MI F V PD FG S E +F+ ++ ++E ++ +
Sbjct: 59 WSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNI 118
Query: 119 SLVGLSYGGFVGYSMAAQFKEKIEKVVICCSGVCLE 154
+LV +GGF+G ++ + ++++I + + +
Sbjct: 119 TLVVQDWGGFLGLTLPMADPSRFKRLIIMNAXLMTD 154
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 66 WTNIIPHMIHYF-----NVYVPDLLFFGDSFTTRPERSESFQ--AECVMRVMEAHSVKKL 118
W+ + MI F V PD FG S E +F+ ++ ++E ++ +
Sbjct: 59 WSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNI 118
Query: 119 SLVGLSYGGFVGYSMAAQFKEKIEKVVICCSGVCL 153
+LV +GGF+G ++ + ++++I CL
Sbjct: 119 TLVVQXWGGFLGLTLPMADPSRFKRLIIM--NACL 151
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 66 WTNIIPHMIHYF-----NVYVPDLLFFGDSFTTRPERSESFQ--AECVMRVMEAHSVKKL 118
W+ + MI F V PD FG S E +F+ ++ ++E ++ +
Sbjct: 59 WSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNI 118
Query: 119 SLVGLSYGGFVGYSMAAQFKEKIEKVVICCSGVCL 153
+LV +GGF+G ++ + ++++I CL
Sbjct: 119 TLVVQDWGGFLGLTLPMADPSRFKRLIIM--NACL 151
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 318
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 52 LVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTTRPERSESFQAECVMRVME 111
++ +HG A + + W +++PH+ +PDL+ G S + + S++ + +
Sbjct: 46 VIFLHG-NATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKS---GNGSYRLLDHYKYLT 101
Query: 112 A-----HSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVV 145
A + KK+ VG +G + + A + +++I+ +V
Sbjct: 102 AWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIV 140
>pdb|1QGE|D Chain D, New Crystal Form Of Pseudomonas Glumae (Formerly
Chromobacterium Viscosum Atcc 6918) Lipase
Length = 222
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 12/106 (11%)
Query: 52 LVLIHGLG-----ANALWQWTNIIPHM-IHYFNVYVPDLLFF--GDSFTTRPERSESFQA 103
++L+HGL AN + W I + H VYV +L F D R E+ ++
Sbjct: 11 VILVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYVANLSGFQSDDGPNGRGEQLLAY-- 68
Query: 104 ECVMRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVVICCS 149
V +V+ A K++L+G S GG +AA + + V +
Sbjct: 69 --VKQVLAATGATKVNLIGHSQGGLTSRYVAAVAPQLVASVTTIGT 112
>pdb|1XRQ|A Chain A, Crystal Structure Of Active Site F1-Mutant E245q Soaked
With Peptide Phe-Leu
pdb|1XRR|A Chain A, Crystal Structure Of Active Site F1-mutant E245q Soaked
With Peptide Pro-pro
Length = 293
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 229 KDRKISN-IDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKP 287
KD I++ I I PTLI GE+DQ+ P + R + + ++L V + H +E
Sbjct: 221 KDWDITDKISAIKIPTLITVGEYDQVTP-NVARVIHEKIA-GSELHVFRDCSHLTMWEDR 278
Query: 288 KEFYKHLKSFLL 299
+ + K L F+L
Sbjct: 279 EGYNKLLSDFIL 290
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 52 LVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTTRPERSESFQAECVMRVME 111
++ +HG A + + W +++PH+ +PDL+ G S + + S++ + +
Sbjct: 47 VIFLHG-NATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKS---GNGSYRLLDHYKYLT 102
Query: 112 A-----HSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVV 145
A + KK+ VG +G + + A + +++I+ +V
Sbjct: 103 AWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIV 141
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 310
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 52 LVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTTRPERSESFQAECVMRVME 111
++ +HG A + + W +++PH+ +PDL+ G S + + S++ + +
Sbjct: 46 VIFLHG-NATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKS---GNGSYRLLDHYKYLT 101
Query: 112 A-----HSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVV 145
A + KK+ VG +G + + A + +++I+ +V
Sbjct: 102 AWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIV 140
>pdb|2PSH|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSH|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 52 LVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTTRPERSESFQAECVMRVME 111
++ +HG A + + W +++PH+ +PDL+ G S + + S++ + +
Sbjct: 47 VIFLHG-NATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKS---GNGSYRLLDHYKYLT 102
Query: 112 A-----HSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVV 145
A + KK+ VG +G + + A + +++I+ +V
Sbjct: 103 AWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIV 141
>pdb|1MJ5|A Chain A, Linb (Haloalkane Dehalogenase) From Sphingomonas
Paucimobilis Ut26 At Atomic Resolution
Length = 302
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 46 NDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTTRPERSESF---- 101
++ D +L + + W NI+PH + DL+ GDS P E +
Sbjct: 25 DEGTGDPILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPSGPERYAYAE 84
Query: 102 QAECVMRVMEAHSV-KKLSLVGLSYGGFVGYSMAAQFKEKIEKVV 145
+ + + EA + ++ LV +G +G+ A + +E+++ +
Sbjct: 85 HRDYLDALWEALDLGDRVVLVVHDWGSALGFDWARRHRERVQGIA 129
>pdb|1CV2|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.6 A Resolution
pdb|1D07|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 With 1,3-Propanediol, A Product Of
Debromidation Of Dibrompropane, At 2.0a Resolution
pdb|2BFN|A Chain A, The Crystal Structure Of The Complex Of The Haloalkane
Dehalogenase Linb With The Product Of Dehalogenation
Reaction 1,2-Dichloropropane
Length = 296
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 46 NDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTTRPERSESF---- 101
++ D +L + + W NI+PH + DL+ GDS P E +
Sbjct: 25 DEGTGDPILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPSGPERYAYAE 84
Query: 102 QAECVMRVMEAHSV-KKLSLVGLSYGGFVGYSMAAQFKEKIEKVV 145
+ + + EA + ++ LV +G +G+ A + +E+++ +
Sbjct: 85 HRDYLDALWEALDLGDRVVLVVHDWGSALGFDWARRHRERVQGIA 129
>pdb|3OOS|A Chain A, The Structure Of An AlphaBETA FOLD FAMILY HYDROLASE FROM
BACILLUS Anthracis Str. Sterne
Length = 278
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 71 PHMIHYFNVYVPDLLFFG--DSFTTRPERSESFQAECVMRVMEAHSVKKLSLVGLSYGGF 128
P HY +VY+ +L G DS E S + + + + EA + K G S GG
Sbjct: 45 PFTDHY-SVYLVNLKGCGNSDSAKNDSEYSXTETIKDLEAIREALYINKWGFAGHSAGGX 103
Query: 129 VGYSMAAQFKEKIEKVVICCSGVCLEEQDLRDRMF 163
+ A + +E + K+++ + E +D ++
Sbjct: 104 LALVYATEAQESLTKIIVGGAAASKEYASHKDSIY 138
>pdb|1IZ7|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26 At
1.6 A Resolution
pdb|1IZ8|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26
With 1,3-Propanediol, A Product Of Debromidation Of
Dibrompropane, At 2.0a Resolution
pdb|1K5P|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.8a Resolution
pdb|1K63|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis With Ut26
2-Bromo-2-Propene-1-Ol At 1.8a Resolution
pdb|1K6E|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis Ut26 With 1,2-Propanediol
(Product Of Dehalogenation Of 1,2-Dibromopropane) At
1.85a
Length = 295
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 46 NDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTTRPERSESF---- 101
++ D +L + + W NI+PH + DL+ GDS P E +
Sbjct: 24 DEGTGDPILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPSGPERYAYAE 83
Query: 102 QAECVMRVMEAHSV-KKLSLVGLSYGGFVGYSMAAQFKEKIEKVV 145
+ + + EA + ++ LV +G +G+ A + +E+++ +
Sbjct: 84 HRDYLDALWEALDLGDRVVLVVHDWGSALGFDWARRHRERVQGIA 128
>pdb|1G5F|A Chain A, Structure Of Linb Complexed With 1,2-Dichloroethane
pdb|1G4H|A Chain A, Linb Complexed With Butan-1-Ol
pdb|1G42|A Chain A, Structure Of 1,3,4,6-Tetrachloro-1,4-Cyclohexadiene
Hydrolase (Linb) From Sphingomonas Paucimobilis
Complexed With 1,2-Dichloropropane
Length = 296
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 46 NDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTTRPERSESF---- 101
++ D +L + + W NI+PH + DL+ GDS P E +
Sbjct: 25 DEGTGDPILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPSGPERYAYAE 84
Query: 102 QAECVMRVMEAHSV-KKLSLVGLSYGGFVGYSMAAQFKEKIEKVV 145
+ + + EA + ++ LV +G +G+ A + +E+++ +
Sbjct: 85 HRDYLDALWEALDLGDRVVLVVHDWGSALGFDWARRHRERVQGIA 129
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 220 KRELVRAIPKDRKISNIDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAG 279
K VR R +DK T+P LI+ G+ D+ P E N +L+ I
Sbjct: 169 KGNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQY-KNCKLVTIPGDT 227
Query: 280 HAFNY------EKPKEF 290
H +++ E KEF
Sbjct: 228 HCYDHHLELVTEAVKEF 244
>pdb|4HRX|A Chain A, Crystal Structure Of Kai2
pdb|4HRY|A Chain A, The Structure Of Arabidopsis Thaliana Kai2
pdb|4HTA|A Chain A, The Structure Of The Karrikin Insensitive (kai2) Protein
In Arabidopsis Thaliana
Length = 288
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 59/140 (42%), Gaps = 19/140 (13%)
Query: 17 SCFKRLGFRSSVTDLQDGSVMHCWVPKTRNDSKPDLVLIHGLGANALWQWTNIIPHMIHY 76
S +K+ GF V + + V+ + +VL HG G + W +++PH++
Sbjct: 11 SLYKKAGFMGVVEEAHNVKVI--------GSGEATIVLGHGFGTDQ-SVWKHLVPHLVDD 61
Query: 77 FNVYVPDLLFFGDSFTTRP-----ERSESFQAEC--VMRVMEAHSVKKLSLVGLSYGGFV 129
+ V + D + G TT P +R + + ++ ++E ++ VG S +
Sbjct: 62 YRVVLYDNMGAG---TTNPDYFDFDRYSNLEGYSFDLIAILEDLKIESCIFVGHSVSAMI 118
Query: 130 GYSMAAQFKEKIEKVVICCS 149
G + + K+V+ +
Sbjct: 119 GVLASLNRPDLFSKIVMISA 138
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 115 VKKLSLVGLSYGGFVGYSMAAQFKEKIEKVVICCSGVCLEEQDLRDRMFKVS 166
V+ + LVG S GG V +A + + I+KVV+ L+ L V+
Sbjct: 118 VRNIYLVGHSQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVT 169
>pdb|1MT3|A Chain A, Crystal Structure Of The Tricorn Interacting Factor
Selenomethionine-f1
Length = 293
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 229 KDRKISN-IDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKP 287
KD I++ I I PTLI GE+D++ P + R + + ++L V + H +E
Sbjct: 221 KDWDITDKISAIKIPTLITVGEYDEVTP-NVARVIHEKIA-GSELHVFRDCSHLTXWEDR 278
Query: 288 KEFYKHLKSFLL 299
+ + K L F+L
Sbjct: 279 EGYNKLLSDFIL 290
>pdb|1XQV|A Chain A, Crystal Structure Of Inactive F1-Mutant G37a
Length = 293
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 229 KDRKISN-IDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKP 287
KD I++ I I PTLI GE+D++ P + R + + ++L V + H +E
Sbjct: 221 KDWDITDKISAIKIPTLITVGEYDEVTP-NVARVIHEKIA-GSELHVFRDCSHLTMWEDR 278
Query: 288 KEFYKHLKSFLL 299
+ + K L F+L
Sbjct: 279 EGYNKLLSDFIL 290
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 235 NIDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAF 282
++ I QP L++ G+ DQI P E L + L N L K H
Sbjct: 211 DLKGIQQPVLVMHGDDDQIVPYENSGVLSAKLLPNGALKTYKGYPHGM 258
>pdb|1XRM|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Ala-Phe
pdb|1XRN|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Ala
pdb|1XRO|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Leu
pdb|1XRP|A Chain A, Crystal Structure Of Active Site F1-mutant E213q Soaked
With Peptide Pro-leu-gly-gly
Length = 293
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 229 KDRKISN-IDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKP 287
KD I++ I I PTLI GE+D++ P + R + + ++L V + H +E
Sbjct: 221 KDWDITDKISAIKIPTLITVGEYDEVTP-NVARVIHEKIA-GSELHVFRDCSHLTMWEDR 278
Query: 288 KEFYKHLKSFLL 299
+ + K L F+L
Sbjct: 279 EGYNKLLSDFIL 290
>pdb|1XRL|A Chain A, Crystal Structure Of Active Site F1-Mutant Y205f Complex
With Inhibitor Pck
Length = 293
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 229 KDRKISN-IDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKP 287
KD I++ I I PTLI GE+D++ P + R + + ++L V + H +E
Sbjct: 221 KDWDITDKISAIKIPTLITVGEYDEVTP-NVARVIHEKIA-GSELHVFRDCSHLTMWEDR 278
Query: 288 KEFYKHLKSFLL 299
+ + K L F+L
Sbjct: 279 EGYNKLLSDFIL 290
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 229 KDRKISN-IDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKP 287
KD I++ I I PTLI GE+D++ P + R + + ++L V + H +E
Sbjct: 221 KDWDITDKISAIKIPTLITVGEYDEVTP-NVARVIHEKIA-GSELHVFRDCSHLTMWEDR 278
Query: 288 KEFYKHLKSFLL 299
+ + K L F+L
Sbjct: 279 EGYNKLLSDFIL 290
>pdb|1XQW|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Phe-Leu
pdb|1XQX|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pck
pdb|1XQY|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pro-Leu-
Gly-Gly
Length = 293
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 229 KDRKISN-IDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKP 287
KD I++ I I PTLI GE+D++ P + R + + ++L V + H +E
Sbjct: 221 KDWDITDKISAIKIPTLITVGEYDEVTP-NVARVIHEKIA-GSELHVFRDCSHLTMWEDR 278
Query: 288 KEFYKHLKSFLL 299
+ + K L F+L
Sbjct: 279 EGYNKLLSDFIL 290
>pdb|2XLB|A Chain A, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|B Chain B, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|C Chain C, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|D Chain D, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|E Chain E, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|F Chain F, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|G Chain G, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|H Chain H, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|I Chain I, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|J Chain J, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|K Chain K, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
pdb|2XLB|L Chain L, Acetyl Xylan Esterase From Bacillus Pumilus Without
Ligands
Length = 320
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 239 ITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGH----AFNYEKPKEFYKHL 294
+ QPTL+ G DQ+ P +HL + +L V + GH AF EK KHL
Sbjct: 257 VKQPTLMAIGLIDQVTPPSTVFAAYNHLETDKELKVYRYFGHEFIPAFQTEKLSFLQKHL 316
>pdb|3A2M|A Chain A, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2M|B Chain B, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2N|A Chain A, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|B Chain B, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|E Chain E, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|F Chain F, Crystal Structure Of Dbja (Wild Type Type Ii P21)
Length = 312
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 43 KTRNDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTTRPERSESF- 101
+T P ++ +HG + W NI+P + + PDL+ FG S +P+ + F
Sbjct: 23 ETGAQDAPVVLFLHG-NPTSSHIWRNILPLVSPVAHCIAPDLIGFGQS--GKPDIAYRFF 79
Query: 102 -QAECVMRVMEAHSVKKLSLVGLSYGGFVGYSMAAQ 136
+ +E V LV +G + + +AA+
Sbjct: 80 DHVRYLDAFIEQRGVTSAYLVAQDWGTALAFHLAAR 115
>pdb|3AFI|E Chain E, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|A Chain A, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|B Chain B, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|F Chain F, Crystal Structure Of Dbja (His-Dbja)
Length = 316
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 43 KTRNDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTTRPERSESF- 101
+T P ++ +HG + W NI+P + + PDL+ FG S +P+ + F
Sbjct: 23 ETGAQDAPVVLFLHG-NPTSSHIWRNILPLVSPVAHCIAPDLIGFGQS--GKPDIAYRFF 79
Query: 102 -QAECVMRVMEAHSVKKLSLVGLSYGGFVGYSMAAQ 136
+ +E V LV +G + + +AA+
Sbjct: 80 DHVRYLDAFIEQRGVTSAYLVAQDWGTALAFHLAAR 115
>pdb|3A2L|A Chain A, Crystal Structure Of Dbja (Mutant Dbja Delta)
pdb|3A2L|B Chain B, Crystal Structure Of Dbja (Mutant Dbja Delta)
Length = 309
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 43 KTRNDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTTRPERSESF- 101
+T P ++ +HG + W NI+P + + PDL+ FG S +P+ + F
Sbjct: 23 ETGAQDAPVVLFLHG-NPTSSHIWRNILPLVSPVAHCIAPDLIGFGQS--GKPDIAYRFF 79
Query: 102 -QAECVMRVMEAHSVKKLSLVGLSYGGFVGYSMAAQ 136
+ +E V LV +G + + +AA+
Sbjct: 80 DHVRYLDAFIEQRGVTSAYLVAQDWGTALAFHLAAR 115
>pdb|2QVB|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
pdb|2QVB|B Chain B, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
Length = 297
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/105 (19%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 46 NDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTTRPERSESF---- 101
++ K D ++ + + W NI+PH+ + DL+ G S P + +
Sbjct: 24 DEGKGDAIVFQHGNPTSSYLWRNIMPHLEGLGRLVACDLIGMGASDKLSPSGPDRYSYGE 83
Query: 102 QAECVMRVMEAHSVKK-LSLVGLSYGGFVGYSMAAQFKEKIEKVV 145
Q + + + +A + + LV +G +G+ A Q +++++ +
Sbjct: 84 QRDFLFALWDALDLGDHVVLVLHDWGSALGFDWANQHRDRVQGIA 128
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 234 SNIDKITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGHAFNYEKPKE 289
++I +I P LIL G D+ P+E R+ +A+ + ++ A H + +E
Sbjct: 212 ADIPRIDVPALILHGTGDRTLPIENTARVFHKALPSAEYVEVEGAPHGLLWTHAEE 267
>pdb|2O2H|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With
1,2-Dichloroethane
pdb|2O2I|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With 1,3-Propandiol
Length = 300
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/105 (19%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 46 NDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTTRPERSESF---- 101
++ K D ++ + + W NI+PH+ + DL+ G S P + +
Sbjct: 26 DEGKGDAIVFQHGNPTSSYLWRNIMPHLEGLGRLVACDLIGMGASDKLSPSGPDRYSYGE 85
Query: 102 QAECVMRVMEAHSVKK-LSLVGLSYGGFVGYSMAAQFKEKIEKVV 145
Q + + + +A + + LV +G +G+ A Q +++++ +
Sbjct: 86 QRDFLFALWDALDLGDHVVLVLHDWGSALGFDWANQHRDRVQGIA 130
>pdb|3BF8|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF8|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 43 KTRNDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTTRPERSESFQ 102
+ ++++ P +VL+HGL +L + +++ N+ D+ G S P +
Sbjct: 11 QNQHNNSP-IVLVHGLFG-SLDNLGVLARDLVNDHNIIQVDVRNHGLS-PREPVMNYPAM 67
Query: 103 AECVMRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVV 145
A+ ++ ++A + K + +G S GG ++ A ++I+K+V
Sbjct: 68 AQDLVDTLDAQQIDKATFIGHSMGGKAVMALTALAPDRIDKLV 110
>pdb|2XLC|A Chain A, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
To Paraoxon
pdb|2XLC|B Chain B, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
To Paraoxon
pdb|2XLC|C Chain C, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
To Paraoxon
pdb|2XLC|D Chain D, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
To Paraoxon
pdb|2XLC|E Chain E, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
To Paraoxon
pdb|2XLC|F Chain F, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
To Paraoxon
Length = 320
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 239 ITQPTLILWGEHDQIFPLELGRRLKSHLGDNAQLIVIKKAGH----AFNYEKPKEFYKHL 294
+ QPTL G DQ+ P +HL + +L V + GH AF EK KHL
Sbjct: 257 VKQPTLXAIGLIDQVTPPSTVFAAYNHLETDKELKVYRYFGHEFIPAFQTEKLSFLQKHL 316
>pdb|4IH1|A Chain A, Crystal Structure Of Karrikin Insensitive 2 (kai2) From
Arabidopsis Thaliana
Length = 270
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 43 KTRNDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTTRP-----ER 97
K + +VL HG G + W +++PH++ + V + D + G TT P +R
Sbjct: 11 KVIGSGEATIVLGHGFGTDQ-SVWKHLVPHLVDDYRVVLYDNMGAG---TTNPDYFDFDR 66
Query: 98 SESFQAEC--VMRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVVICCS 149
+ + ++ ++E ++ VG S +G + + K+V+ +
Sbjct: 67 YSNLEGYSFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISA 120
>pdb|3W06|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dwarf14 Like
(atd14l)
Length = 272
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 43 KTRNDSKPDLVLIHGLGANALWQWTNIIPHMIHYFNVYVPDLLFFGDSFTTRP-----ER 97
K + +VL HG G + W +++PH++ + V + D + G TT P +R
Sbjct: 13 KVIGSGEATIVLGHGFGTDQ-SVWKHLVPHLVDDYRVVLYDNMGAG---TTNPDYFDFDR 68
Query: 98 SESFQAEC--VMRVMEAHSVKKLSLVGLSYGGFVGYSMAAQFKEKIEKVVICCS 149
+ + ++ ++E ++ VG S +G + + K+V+ +
Sbjct: 69 YSNLEGYSFDLIAILEDLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISA 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,433,892
Number of Sequences: 62578
Number of extensions: 323139
Number of successful extensions: 1448
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 1366
Number of HSP's gapped (non-prelim): 146
length of query: 315
length of database: 14,973,337
effective HSP length: 99
effective length of query: 216
effective length of database: 8,778,115
effective search space: 1896072840
effective search space used: 1896072840
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)