Your job contains 1 sequence.
>021234
MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY
TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG
VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL
AGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLR
KEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKN
DPTEHASKKQKEESV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 021234
(315 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2088015 - symbol:AT3G23620 "AT3G23620" species... 1190 5.8e-121 1
UNIPROTKB|F1MMB9 - symbol:RPF2 "Ribosome production facto... 606 4.5e-59 1
UNIPROTKB|Q2YDN6 - symbol:RPF2 "Ribosome production facto... 606 4.5e-59 1
MGI|MGI:1914489 - symbol:Rpf2 "ribosome production factor... 600 1.9e-58 1
UNIPROTKB|E1BZU0 - symbol:RPF2 "Uncharacterized protein" ... 599 2.5e-58 1
UNIPROTKB|Q9H7B2 - symbol:RPF2 "Ribosome production facto... 597 4.0e-58 1
RGD|1306906 - symbol:Rpf2 "ribosome production factor 2 h... 597 4.0e-58 1
UNIPROTKB|E2RRK1 - symbol:RPF2 "Uncharacterized protein" ... 586 5.9e-57 1
ZFIN|ZDB-GENE-040426-2501 - symbol:rpf2 "ribosome product... 570 2.9e-55 1
UNIPROTKB|F1RT06 - symbol:RPF2 "Uncharacterized protein" ... 535 1.5e-51 1
POMBASE|SPAC926.08c - symbol:SPAC926.08c "Brix domain pro... 514 2.5e-49 1
DICTYBASE|DDB_G0292216 - symbol:bxdc1 "brix domain-contai... 484 3.8e-46 1
FB|FBgn0038585 - symbol:CG7993 species:7227 "Drosophila m... 468 1.9e-44 1
SGD|S000001789 - symbol:RPF2 "Essential protein involved ... 463 6.4e-44 1
CGD|CAL0005924 - symbol:RPF2 species:5476 "Candida albica... 437 3.6e-41 1
UNIPROTKB|Q59ZG6 - symbol:RPF2 "Likely nucleolar ribosoma... 437 3.6e-41 1
ASPGD|ASPL0000042180 - symbol:AN10200 species:162425 "Eme... 432 1.2e-40 1
WB|WBGene00021830 - symbol:Y54E10A.10 species:6239 "Caeno... 407 5.5e-38 1
GENEDB_PFALCIPARUM|PF10_0278 - symbol:PF10_0278 "BRIX dom... 150 5.2e-16 2
UNIPROTKB|Q8IJC0 - symbol:PF10_0278 "Nucleolar preribosom... 150 5.2e-16 2
>TAIR|locus:2088015 [details] [associations]
symbol:AT3G23620 "AT3G23620" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 EMBL:AB023036
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 PROSITE:PS50833
EMBL:AY070410 EMBL:AY122939 EMBL:AY086550 IPI:IPI00523872
RefSeq:NP_566734.1 UniGene:At.28364 ProteinModelPortal:Q9LUG5
STRING:Q9LUG5 PaxDb:Q9LUG5 PRIDE:Q9LUG5 EnsemblPlants:AT3G23620.1
GeneID:821942 KEGG:ath:AT3G23620 TAIR:At3g23620 eggNOG:COG5106
HOGENOM:HOG000157782 InParanoid:Q9LUG5 KO:K14847 OMA:LDMFELG
PhylomeDB:Q9LUG5 ProtClustDB:CLSN2688700 Genevestigator:Q9LUG5
GermOnline:AT3G23620 Uniprot:Q9LUG5
Length = 314
Score = 1190 (424.0 bits), Expect = 5.8e-121, P = 5.8e-121
Identities = 224/314 (71%), Positives = 266/314 (84%)
Query: 1 MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
M++++TPK + KR LE RAPKLVETGKKTLIL GTKTS TL+ V+TELY LKKG AIRY
Sbjct: 1 MMEIRTPKTGKAKRVLESRAPKLVETGKKTLILHGTKTSATLSSVMTELYRLKKGGAIRY 60
Query: 61 TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
+R+NENIRPFESGGETSLEFFS KTDCSIF+YGS +KKRPDNLV+GR YDH +YDL+EVG
Sbjct: 61 SRRNENIRPFESGGETSLEFFSQKTDCSIFVYGSHTKKRPDNLVLGRMYDHQVYDLIEVG 120
Query: 121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
+ENFK L +F YDKK AP G+KPFICF+GEGFE+V ELKHLKEVL DL RGEV++NLNL
Sbjct: 121 IENFKSLRAFSYDKKFAPHEGTKPFICFIGEGFENVSELKHLKEVLTDLFRGEVVDNLNL 180
Query: 181 AGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLR 240
GLD AYVC+A+S +VF THCAL+LKKSG+IVPRMELVEVGP MD V+RR+RLPN+SL
Sbjct: 181 TGLDRAYVCSAISPTKVFLTHCALKLKKSGSIVPRMELVEVGPSMDLVIRRNRLPNDSLM 240
Query: 241 KEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKN 300
KEAM+T+KD+ KKK KNV QDA+ GK GKIY+PDQKL +M L +K+KG KRER++AK+K+
Sbjct: 241 KEAMRTSKDKPKKKEKNVDQDAVLGKTGKIYMPDQKLKEMKLFDKSKGSKRERKDAKLKH 300
Query: 301 DPTEHASKKQKEES 314
E +KK K S
Sbjct: 301 KE-ETVAKKMKVSS 313
>UNIPROTKB|F1MMB9 [details] [associations]
symbol:RPF2 "Ribosome production factor 2 homolog"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
GO:GO:0005730 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
PROSITE:PS50833 OMA:LDMFELG IPI:IPI00686330 UniGene:Bt.47903
GeneTree:ENSGT00390000007279 EMBL:DAAA02025897
Ensembl:ENSBTAT00000022060 Uniprot:F1MMB9
Length = 306
Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
Identities = 131/310 (42%), Positives = 192/310 (61%)
Query: 3 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
+V PK R KR LEKR PKL E K ++++G ++T+ VL ++Y LKK I Y +
Sbjct: 6 RVVKPKTKRAKRFLEKREPKLSENIKNAMLIKGGNANSTVTQVLRDVYALKKPYGILYKK 65
Query: 63 KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
KN RPFE +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+G+E
Sbjct: 66 KNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIE 122
Query: 123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
F L I + K P G+KP + F G+ F+ E+ + LK +L+D RG + N+ LAG
Sbjct: 123 KFVSLKD-IKNSK-CPE-GTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAG 179
Query: 183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
L++ TA++ +++F L LKKSG PR+EL E+GP +D V+RR L ++ L K
Sbjct: 180 LEYVLHFTALNG-KIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLASDDLYKL 238
Query: 243 AMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKNDP 302
+MK K KK KN+ D G+I++ Q L + K KG+K+ R A+ K +
Sbjct: 239 SMKMPKALKPKKKKNISHDTFGTTYGRIHMQKQDLSKLQT-RKMKGLKK--RPAERKAED 295
Query: 303 TEHASKKQKE 312
E+ SK+ K+
Sbjct: 296 EENKSKRIKK 305
>UNIPROTKB|Q2YDN6 [details] [associations]
symbol:RPF2 "Ribosome production factor 2 homolog"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
GO:GO:0005730 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
PROSITE:PS50833 eggNOG:COG5106 HOGENOM:HOG000157782 KO:K14847
EMBL:BC110138 IPI:IPI00686330 RefSeq:NP_001039548.1
UniGene:Bt.47903 STRING:Q2YDN6 GeneID:511294 KEGG:bta:511294
CTD:84154 HOVERGEN:HBG050749 InParanoid:Q2YDN6 OrthoDB:EOG4VHK77
NextBio:20869869 Uniprot:Q2YDN6
Length = 306
Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
Identities = 131/310 (42%), Positives = 192/310 (61%)
Query: 3 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
+V PK R KR LEKR PKL E K ++++G ++T+ VL ++Y LKK I Y +
Sbjct: 6 RVVKPKTKRAKRFLEKREPKLSENIKNAMLIKGGNANSTVTQVLRDVYALKKPYGILYKK 65
Query: 63 KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
KN RPFE +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+G+E
Sbjct: 66 KNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDIIELGIE 122
Query: 123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
F L I + K P G+KP + F G+ F+ E+ + LK +L+D RG + N+ LAG
Sbjct: 123 KFVSLKD-IKNSK-CPE-GTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAG 179
Query: 183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
L++ TA++ +++F L LKKSG PR+EL E+GP +D V+RR L ++ L K
Sbjct: 180 LEYVLHFTALNG-KIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLASDDLYKL 238
Query: 243 AMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKNDP 302
+MK K KK KN+ D G+I++ Q L + K KG+K+ R A+ K +
Sbjct: 239 SMKMPKALKPKKKKNISHDTFGTTYGRIHMQKQDLSKLQT-RKMKGLKK--RPAERKAED 295
Query: 303 TEHASKKQKE 312
E+ SK+ K+
Sbjct: 296 EENKSKRIKK 305
>MGI|MGI:1914489 [details] [associations]
symbol:Rpf2 "ribosome production factor 2 homolog (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
MGI:MGI:1914489 GO:GO:0005730 InterPro:IPR007109 Pfam:PF04427
SMART:SM00879 PROSITE:PS50833 eggNOG:COG5106 HOGENOM:HOG000157782
KO:K14847 CTD:84154 HOVERGEN:HBG050749 OrthoDB:EOG4VHK77
EMBL:AB041810 EMBL:AK010776 EMBL:AK011644 EMBL:AK012188
EMBL:AK012641 EMBL:AK013395 EMBL:AK017678 EMBL:AK020030
IPI:IPI00121159 RefSeq:NP_001036021.1 RefSeq:NP_075812.3
UniGene:Mm.11480 ProteinModelPortal:Q9JJ80 STRING:Q9JJ80
PhosphoSite:Q9JJ80 PaxDb:Q9JJ80 PRIDE:Q9JJ80 GeneID:67239
KEGG:mmu:67239 UCSC:uc007ewo.1 InParanoid:Q9JJ80 NextBio:323978
Bgee:Q9JJ80 CleanEx:MM_BXDC1 Genevestigator:Q9JJ80
GermOnline:ENSMUSG00000038510 Uniprot:Q9JJ80
Length = 306
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 131/310 (42%), Positives = 187/310 (60%)
Query: 3 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
KV PK R KR LEKR PKL E K ++++G + T+ VL ++Y LKK + Y +
Sbjct: 6 KVLKPKTKRAKRFLEKREPKLTENIKNAMLIKGGNANATVTQVLRDMYALKKPYGVLYKK 65
Query: 63 KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
KN RPFE +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+G+E
Sbjct: 66 KNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIE 122
Query: 123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
F L K P G+KP + F G+ F+ E+ + LK +L+D RG + N+ LAG
Sbjct: 123 KFVSLKDIKTSK--CPE-GTKPMLIFAGDDFDVTEDFRRLKNLLIDFFRGPTVSNVRLAG 179
Query: 183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
L++ TA++ +V+F L LKKSG PR+EL E+GP +D V+RR L ++ L K
Sbjct: 180 LEYVLHFTALNG-KVYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVMRRTHLASDDLYKL 238
Query: 243 AMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKNDP 302
+MK K KK KN+ QD G+I++ Q L + K KG+K+ R A+ D
Sbjct: 239 SMKVPKALKPKKRKNISQDTFGTTFGRIHMQKQDLSKLQT-RKMKGLKK--RPAENGVDD 295
Query: 303 TEHASKKQKE 312
SK+ K+
Sbjct: 296 QGKKSKRIKK 305
>UNIPROTKB|E1BZU0 [details] [associations]
symbol:RPF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005730 "nucleolus" evidence=IEA] GO:GO:0005730
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 PROSITE:PS50833
KO:K14847 OMA:LDMFELG CTD:84154 GeneTree:ENSGT00390000007279
EMBL:AADN02002057 EMBL:AADN02002058 IPI:IPI00578341
RefSeq:XP_426181.2 UniGene:Gga.11684 Ensembl:ENSGALT00000024259
GeneID:428624 KEGG:gga:428624 NextBio:20829564 Uniprot:E1BZU0
Length = 306
Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
Identities = 125/309 (40%), Positives = 189/309 (61%)
Query: 3 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
+V PK R KR LEKR PKL E K ++++G ++T+ +VL ++Y LKK A+ Y +
Sbjct: 6 RVVKPKTKRAKRFLEKREPKLTENTKNAMLIKGGNANSTVTEVLKDIYALKKPFAVMYKK 65
Query: 63 KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
KN RPFE +TSLEFFS K+DCS+F++GS +KKRP+NL++GR +D+H+ D++E+G+E
Sbjct: 66 KNIT-RPFED--QTSLEFFSKKSDCSLFLFGSHNKKRPNNLIVGRMFDYHVLDMIELGIE 122
Query: 123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
NF L +K P G+KP + F G+ F+ EE + LK +L+D RG + N+ LAG
Sbjct: 123 NFVSLKDIKNNK--CPE-GTKPMLIFAGDTFDLSEEYRRLKSLLIDFFRGPTVPNIRLAG 179
Query: 183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
L+H TAV +++ + LKKSG +PR+EL ++GP +D V+RR L ++ L K
Sbjct: 180 LEHVLHFTAVDG-KIYMRSYKVLLKKSGCKIPRIELEDIGPSLDLVMRRTHLASDDLYKL 238
Query: 243 AMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKNDP 302
++K K KK KN+ D G+I++ Q L + K KG+K+ R A+ +
Sbjct: 239 SLKQPKALKPKKKKNISHDVFGTTYGRIHMQKQDLSKLQT-RKMKGLKK--RPAEKSAED 295
Query: 303 TEHASKKQK 311
+ KK K
Sbjct: 296 GGISPKKTK 304
>UNIPROTKB|Q9H7B2 [details] [associations]
symbol:RPF2 "Ribosome production factor 2 homolog"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] GO:GO:0005730 EMBL:CH471051
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 PROSITE:PS50833
EMBL:AL357515 eggNOG:COG5106 HOGENOM:HOG000157782 KO:K14847
OMA:LDMFELG CTD:84154 HOVERGEN:HBG050749 OrthoDB:EOG4VHK77
EMBL:BC035314 EMBL:AK024740 IPI:IPI00396329 RefSeq:NP_115570.1
UniGene:Hs.372265 ProteinModelPortal:Q9H7B2 IntAct:Q9H7B2
STRING:Q9H7B2 PhosphoSite:Q9H7B2 DMDM:30581070 SWISS-2DPAGE:Q9H7B2
PaxDb:Q9H7B2 PRIDE:Q9H7B2 DNASU:84154 Ensembl:ENST00000441448
GeneID:84154 KEGG:hsa:84154 UCSC:uc003pun.3 GeneCards:GC06P111306
HGNC:HGNC:20870 HPA:HPA035475 neXtProt:NX_Q9H7B2
PharmGKB:PA165618192 InParanoid:Q9H7B2 PhylomeDB:Q9H7B2
GenomeRNAi:84154 NextBio:73492 ArrayExpress:Q9H7B2 Bgee:Q9H7B2
CleanEx:HS_BXDC1 Genevestigator:Q9H7B2 GermOnline:ENSG00000197498
Uniprot:Q9H7B2
Length = 306
Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
Identities = 130/310 (41%), Positives = 190/310 (61%)
Query: 3 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
+V PK R KR LEKR PKL E K ++++G + T+ VL ++Y LKK + Y +
Sbjct: 6 RVVKPKTKRAKRFLEKREPKLNENIKNAMLIKGGNANATVTKVLKDVYALKKPYGVLYKK 65
Query: 63 KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
KN RPFE +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+G+E
Sbjct: 66 KNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIE 122
Query: 123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
NF L I + K P G+KP + F G+ F+ E+ + LK +L+D RG + N+ LAG
Sbjct: 123 NFVSLKD-IKNSK-CPE-GTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAG 179
Query: 183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
L++ TA++ +++F L LKKSG PR+EL E+GP +D V+RR L ++ L K
Sbjct: 180 LEYVLHFTALNG-KIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLASDDLYKL 238
Query: 243 AMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKNDP 302
+MK K KK KN+ D G+I++ Q L + K KG+K+ R A+ +
Sbjct: 239 SMKMPKALKPKKKKNISHDTFGTTYGRIHMQKQDLSKLQT-RKMKGLKK--RPAERITED 295
Query: 303 TEHASKKQKE 312
E SK+ K+
Sbjct: 296 HEKKSKRIKK 305
>RGD|1306906 [details] [associations]
symbol:Rpf2 "ribosome production factor 2 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
RGD:1306906 GO:GO:0005730 InterPro:IPR007109 Pfam:PF04427
SMART:SM00879 PROSITE:PS50833 eggNOG:COG5106 HOGENOM:HOG000157782
KO:K14847 OMA:LDMFELG CTD:84154 HOVERGEN:HBG050749
OrthoDB:EOG4VHK77 GeneTree:ENSGT00390000007279 EMBL:BC158719
EMBL:CH474051 IPI:IPI00371948 RefSeq:NP_001099861.1
UniGene:Rn.25279 STRING:B0BN82 Ensembl:ENSRNOT00000000717
GeneID:294436 KEGG:rno:294436 UCSC:RGD:1306906 NextBio:638180
Genevestigator:B0BN82 Uniprot:B0BN82
Length = 306
Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
Identities = 127/293 (43%), Positives = 179/293 (61%)
Query: 3 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
KV PK R KR LEKR PKL E K ++++G + T+ VL ++Y LKK + Y +
Sbjct: 6 KVLKPKTKRAKRFLEKREPKLSENIKNAMLIKGGNANATVTQVLRDVYALKKPYGVLYKK 65
Query: 63 KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
KN RPFE +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+G+E
Sbjct: 66 KNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIE 122
Query: 123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
F L K P G+KP + F G+ F+ E+ + LK +L+D RG + N+ LAG
Sbjct: 123 KFVSLKDIKTSK--CPE-GTKPMLIFAGDDFDVTEDYRRLKNLLIDFFRGPTVSNVRLAG 179
Query: 183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
L++ TA++ +V+F L LKKSG PR+EL E+GP +D VVRR L ++ L K
Sbjct: 180 LEYVLHFTALNG-KVYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVVRRTHLASDDLYKL 238
Query: 243 AMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERRE 295
+MK K KK KN+ QD G+I++ Q L + K KG+K+ E
Sbjct: 239 SMKVPKALKPKKRKNISQDTFGTTFGRIHMQKQDLSKLQT-RKVKGLKKRPAE 290
>UNIPROTKB|E2RRK1 [details] [associations]
symbol:RPF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005730 "nucleolus" evidence=IEA]
GO:GO:0005730 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
PROSITE:PS50833 KO:K14847 OMA:LDMFELG CTD:84154
GeneTree:ENSGT00390000007279 EMBL:AAEX03008605 RefSeq:XP_854452.1
Ensembl:ENSCAFT00000006295 GeneID:475029 KEGG:cfa:475029
NextBio:20850944 Uniprot:E2RRK1
Length = 306
Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
Identities = 128/310 (41%), Positives = 189/310 (60%)
Query: 3 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
+V PK R KR LEKR PKL E K ++++G ++ + VL ++Y LKK + Y +
Sbjct: 6 RVVKPKTKRAKRFLEKREPKLSENIKNAMLIKGGNANSMVTQVLRDVYALKKPYGVLYKK 65
Query: 63 KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
KN RPFE +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+G+E
Sbjct: 66 KNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIE 122
Query: 123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
F L + + K P G+KP + F G+ F+ E+ + LK +L+D RG + N+ LAG
Sbjct: 123 KFVSLKD-VKNSK-CPE-GTKPMLIFAGDDFDVTEDYRRLKNLLIDFFRGPTVSNIRLAG 179
Query: 183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
L++ TA++ +++F L LKKSG PR+EL E+G +D V+RR RL ++ L K
Sbjct: 180 LEYVLHFTALNG-KIYFRSYKLLLKKSGCRTPRIELEEMGLSLDLVLRRTRLASDDLYKL 238
Query: 243 AMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKNDP 302
+MK K KK KNV D G+I++ Q L + K KG+K+ R A+ +
Sbjct: 239 SMKMPKALKPKKKKNVSHDTFGTTYGRIHMQKQDLSKLQT-RKMKGLKK--RPAERITED 295
Query: 303 TEHASKKQKE 312
E SK+ K+
Sbjct: 296 QEKKSKRIKK 305
>ZFIN|ZDB-GENE-040426-2501 [details] [associations]
symbol:rpf2 "ribosome production factor 2 homolog
(S. cerevisiae)" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
ZFIN:ZDB-GENE-040426-2501 InterPro:IPR007109 Pfam:PF04427
SMART:SM00879 PROSITE:PS50833 EMBL:BX511077 eggNOG:COG5106
HOGENOM:HOG000157782 KO:K14847 OMA:LDMFELG CTD:84154
HOVERGEN:HBG050749 OrthoDB:EOG4VHK77 GeneTree:ENSGT00390000007279
EMBL:BC065672 IPI:IPI00505728 RefSeq:NP_999913.1 UniGene:Dr.75745
STRING:Q6P0C5 Ensembl:ENSDART00000064542 GeneID:406587
KEGG:dre:406587 InParanoid:Q6P0C5 NextBio:20818140 Uniprot:Q6P0C5
Length = 308
Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
Identities = 121/306 (39%), Positives = 183/306 (59%)
Query: 8 KNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENI 67
K R KR LE R KL E K ++I++G TS+T++ L ++Y LKK +A+ Y +KN +
Sbjct: 11 KTRRSKRFLESRESKLKENPKNSMIIKGGNTSSTVSQALKDVYALKKPNAVLYKKKNM-V 69
Query: 68 RPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPL 127
RPFE T+LEFFS K+DCS+F++GS +KKRP+NL+ GR +D H+ D+ E+G+ENF+ L
Sbjct: 70 RPFEDS--TALEFFSKKSDCSLFLFGSHNKKRPNNLIFGRMFDFHVLDMFELGIENFRSL 127
Query: 128 NSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAY 187
DK P G+KP + F G+ FE+ E + LK VL D G + + LAGL+H
Sbjct: 128 TDIKMDK--CPE-GTKPMLVFAGDLFETDREYQRLKSVLTDFFCGPRVSAVRLAGLEHVL 184
Query: 188 VCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKEAMKTA 247
TA+ +++ + LKKSG PR+EL E+GP DF +RR+ ++ L K A +
Sbjct: 185 HFTALEG-KIYMRSYKVLLKKSGCRTPRIELEEIGPSFDFTMRRNHTASDDLYKTAHRQP 243
Query: 248 KDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKNDPTEHAS 307
K KK KN+ DA ++G++++ Q L + K KG+++ R E + P HA+
Sbjct: 244 KGAKPKKKKNISHDAFGTRLGRLHMQKQDLNKLQT-RKMKGLRKRRAE----HTPDTHAA 298
Query: 308 KKQKEE 313
K + +
Sbjct: 299 KTPRTQ 304
>UNIPROTKB|F1RT06 [details] [associations]
symbol:RPF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] GO:GO:0005730
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 PROSITE:PS50833
OMA:LDMFELG GeneTree:ENSGT00390000007279 EMBL:CU972415
EMBL:FP102931 Ensembl:ENSSSCT00000004857 Uniprot:F1RT06
Length = 263
Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
Identities = 111/246 (45%), Positives = 160/246 (65%)
Query: 3 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
+V P+ R KR LEKR PKL E K ++++G ++T+ VL ++Y LKK + Y +
Sbjct: 6 RVVKPQTKRAKRFLEKREPKLSENIKNAMLIKGGNANSTVTQVLRDVYALKKPYGVLYKK 65
Query: 63 KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
KN RPFE +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+GVE
Sbjct: 66 KNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGVE 122
Query: 123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
F L I + K P G+KP + F G+ F+ E+ + LK +L+D RG + N+ LAG
Sbjct: 123 KFVSLKD-IKNSK-CPE-GTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVPNIRLAG 179
Query: 183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
LD+ TA++ +++F L LKKSG PR+EL E+GP +D V+RR L ++ L K
Sbjct: 180 LDYVLHFTALNG-KIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLASDDLYKL 238
Query: 243 AMKTAK 248
+MK K
Sbjct: 239 SMKMPK 244
>POMBASE|SPAC926.08c [details] [associations]
symbol:SPAC926.08c "Brix domain protein Rpf2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0005732 "small
nucleolar ribonucleoprotein complex" evidence=ISS] [GO:0005829
"cytosol" evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] PomBase:SPAC926.08c
GO:GO:0005829 EMBL:CU329670 GO:GO:0005730 GO:GO:0003723
GO:GO:0006364 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
PROSITE:PS50833 GO:GO:0005732 eggNOG:COG5106 HOGENOM:HOG000157782
KO:K14847 OMA:LDMFELG EMBL:AB027884 PIR:T39206 RefSeq:NP_594369.1
STRING:Q9UUG1 EnsemblFungi:SPAC926.08c.1 GeneID:2543500
KEGG:spo:SPAC926.08c OrthoDB:EOG45QMP4 NextBio:20804510
Uniprot:Q9UUG1
Length = 317
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 122/314 (38%), Positives = 181/314 (57%)
Query: 1 MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
ML+ PKN R KRALEKR PKLVE K + L+G TS DVL +++ LKK ++ +
Sbjct: 1 MLRQVKPKNARTKRALEKREPKLVEGAKTAIFLRGNATSQISLDVLGDIHALKKPFSVNF 60
Query: 61 TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
+KN NI PFE +SLEFFS K D ++ + + +KKRP NL R +++ + D++E+G
Sbjct: 61 QKKN-NILPFEDA--SSLEFFSEKNDAALAVMATHNKKRPHNLTWVRFFNYRVLDMIELG 117
Query: 121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
+ N+K + SF + P G+KP I F G F++ +H+K + +D RGE I+ L+
Sbjct: 118 IVNYKSIQSFSATP-IVP--GTKPMILFQGPVFDAHPTYRHIKSLFLDFFRGEPIQKLDS 174
Query: 181 AGLDHAYVCTAVSSNR--------VFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRH 232
AGL + V +A + V F +L K+ T +PR+EL E+GP +DF +RR
Sbjct: 175 AGLSYVIVVSAAEAQEDETKPLPLVHFRVYGTKLLKTKTNLPRVELEEMGPRIDFNIRRV 234
Query: 233 RLPNESLRKEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKR- 291
+ + +EA+K K Q K KNV D I K+G+I++ Q LG++ K KG+KR
Sbjct: 235 QPAESDVLEEALKKPKTQEPKPKKNVDVDIIGNKVGRIHVDQQDLGNLQT-RKMKGLKRS 293
Query: 292 -ERREAKMKNDPTE 304
E RE +N+ E
Sbjct: 294 VEEREDS-ENEEVE 306
>DICTYBASE|DDB_G0292216 [details] [associations]
symbol:bxdc1 "brix domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0019843 "rRNA binding"
evidence=ISS] [GO:0005730 "nucleolus" evidence=IEA;ISS] [GO:0000027
"ribosomal large subunit assembly" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] dictyBase:DDB_G0292216 GenomeReviews:CM000155_GR
GO:GO:0005730 GO:GO:0019843 InterPro:IPR007109 Pfam:PF04427
SMART:SM00879 PROSITE:PS50833 GO:GO:0000027 EMBL:AAFI02000188
eggNOG:COG5106 KO:K14847 OMA:LDMFELG RefSeq:XP_629737.1
STRING:Q54DJ0 EnsemblProtists:DDB0238377 GeneID:8628566
KEGG:ddi:DDB_G0292216 Uniprot:Q54DJ0
Length = 307
Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
Identities = 104/286 (36%), Positives = 164/286 (57%)
Query: 2 LKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYT 61
LK + K+ K+ L + K VE K+ + ++G ++S+ + + +L++LKK AI+Y
Sbjct: 10 LKREPSKSHAAKKFLRNKEAKEVEIVKQAMFIRGQQSSDIIQKLQKDLFMLKKPEAIQYN 69
Query: 62 RKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGV 121
+KN RP ES S+EF K++ S+F +GS SKKR NL++GR +D+ ++D++E+G+
Sbjct: 70 KKNA-FRPMESA--ESIEFLGEKSNSSLFTFGSHSKKREHNLIMGRLFDNAVFDMIEMGI 126
Query: 122 ENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLA 181
NFK + F D VG+KP F G FE+ E +K + + +D+ RG ++E +NL
Sbjct: 127 SNFKSIKEFGAD---GSAVGNKPMFIFQGNEFENNETVKKVGNLFLDMFRGRLVEYINLV 183
Query: 182 GLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRK 241
GLDH + TAV +++ F H SG+ +P+++L EVGP D +RR +L + L K
Sbjct: 184 GLDHVVIMTAVD-DKILFRHYTTIFSPSGSKIPKVDLKEVGPSFDITIRRTKLASADLEK 242
Query: 242 EAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMAL-PNKA 286
EA K K K KNV DA+ G +Y Q +A N+A
Sbjct: 243 EAYKVHKSVVPKAKKNVETDALGQTFGTVYKNHQDFNKIAFRKNRA 288
>FB|FBgn0038585 [details] [associations]
symbol:CG7993 species:7227 "Drosophila melanogaster"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0022008 "neurogenesis"
evidence=IMP] EMBL:AE014297 GO:GO:0005730 GO:GO:0022008
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 PROSITE:PS50833
eggNOG:COG5106 KO:K14847 OMA:LDMFELG GeneTree:ENSGT00390000007279
EMBL:AY058248 RefSeq:NP_650694.2 UniGene:Dm.4339
ProteinModelPortal:Q9VEB3 IntAct:Q9VEB3 STRING:Q9VEB3 PaxDb:Q9VEB3
EnsemblMetazoa:FBtr0083562 GeneID:42183 KEGG:dme:Dmel_CG7993
UCSC:CG7993-RA FlyBase:FBgn0038585 InParanoid:Q9VEB3
OrthoDB:EOG4CZ8XM PhylomeDB:Q9VEB3 GenomeRNAi:42183 NextBio:827558
Bgee:Q9VEB3 GermOnline:CG7993 Uniprot:Q9VEB3
Length = 320
Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
Identities = 98/315 (31%), Positives = 174/315 (55%)
Query: 1 MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
+L+++ PK + K+ L R P+L+E+ + L L G K + + +L LKK
Sbjct: 3 LLRIRKPKTRKGKKVLLAREPQLIESARTMLFLDGRKCGGNVKLCMKDLQALKKPLVKVL 62
Query: 61 TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
RKN+ I PF+ +SLEF ++K D ++F +GSTSKKRPDN+++GR +++ + D+ E+G
Sbjct: 63 NRKND-ITPFDD--PSSLEFLTMKNDAALFTFGSTSKKRPDNIILGRIFENEVLDMFELG 119
Query: 121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
++ ++ ++ F ++K+ V KP + F G + EEL+ L+ + +D + E ++++ L
Sbjct: 120 IKRYQAISEF-KNEKIGACV--KPCLVFNGPKWAQTEELRRLRNLFIDTFQREKVDSIRL 176
Query: 181 AGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLR 240
G++H T + + LKKSG PR+EL E+GP DF +RR ++ +E L
Sbjct: 177 QGIEHVLSFTVTDDMNILMRSYRILLKKSGQRTPRIELEEIGPSADFSIRRTKIASEDLY 236
Query: 241 KEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKN 300
K+A K K K KN+ DA+ G++++ Q+ G + + K +++ E K
Sbjct: 237 KQARKQPKQLKVGKKKNISTDALGNTKGRVHLGKQQTGSIQT-RRVKALRKTPEEKKENR 295
Query: 301 DPTEHASKKQKEESV 315
+ A K E++
Sbjct: 296 QRKKVALKAAAAEAL 310
>SGD|S000001789 [details] [associations]
symbol:RPF2 "Essential protein involved in rRNA maturation
and ribosomal assembly" species:4932 "Saccharomyces cerevisiae"
[GO:0000466 "maturation of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0005730 "nucleolus" evidence=IEA;IDA;IPI] [GO:0030687
"preribosome, large subunit precursor" evidence=IDA] [GO:0019843
"rRNA binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IMP;IPI]
[GO:0008312 "7S RNA binding" evidence=IPI] [GO:0008097 "5S rRNA
binding" evidence=IPI] [GO:0000463 "maturation of LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] SGD:S000001789 GO:GO:0005730 EMBL:BK006944
GO:GO:0030687 GO:GO:0000463 InterPro:IPR007109 Pfam:PF04427
SMART:SM00879 PROSITE:PS50833 GO:GO:0000027 GO:GO:0008097
EMBL:Z27116 GO:GO:0000466 GO:GO:0008312 eggNOG:COG5106
HOGENOM:HOG000157782 KO:K14847 OMA:LDMFELG
GeneTree:ENSGT00390000007279 OrthoDB:EOG45QMP4 EMBL:Z28306
PIR:S38159 RefSeq:NP_013007.1 ProteinModelPortal:P36160
DIP:DIP-6602N IntAct:P36160 MINT:MINT-612772 STRING:P36160
PaxDb:P36160 PeptideAtlas:P36160 EnsemblFungi:YKR081C GeneID:853956
KEGG:sce:YKR081C CYGD:YKR081c NextBio:975371 Genevestigator:P36160
GermOnline:YKR081C Uniprot:P36160
Length = 344
Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
Identities = 117/312 (37%), Positives = 169/312 (54%)
Query: 1 MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
M++ PKN R KRAL KR KLVE K+ L + G + L+D++ +L LKK R+
Sbjct: 1 MIRTVKPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRF 60
Query: 61 TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
RKN+ I PFE + LEFFS K DCS+ + ++SKKR +N+ RT+ + IYD++E+
Sbjct: 61 NRKND-IHPFED--MSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELM 117
Query: 121 V-ENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLN 179
V +NFK L+ F KKL VG KP F G F++ K +K + +D RGE + +
Sbjct: 118 VADNFKLLSDF---KKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQD 174
Query: 180 LAGLDHAYVCTAVSSNR-------VFFTHCALRLKKS---GTIVPRMELVEVGPCMDFVV 229
+AGL H T + V F L+ KS G +PR+ELVE+GP +DF +
Sbjct: 175 VAGLQHVISMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKI 234
Query: 230 RRHRLPNESLRKEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGV 289
R P+ + EA K K K KNV D + K+G+I++ Q LG + K KG+
Sbjct: 235 GRIHTPSPDMVTEAHKKPKQLEMKTKKNVELDIMGDKLGRIHMGKQDLGKLQT-RKMKGL 293
Query: 290 KRERREAKMKND 301
K + + + D
Sbjct: 294 KSKFDQGTEEGD 305
>CGD|CAL0005924 [details] [associations]
symbol:RPF2 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0030687
"preribosome, large subunit precursor" evidence=IEA] [GO:0000466
"maturation of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0000027
"ribosomal large subunit assembly" evidence=IEA] [GO:0000463
"maturation of LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008097 "5S rRNA
binding" evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
CGD:CAL0005924 GO:GO:0035690 InterPro:IPR007109 Pfam:PF04427
SMART:SM00879 PROSITE:PS50833 EMBL:AACQ01000094 EMBL:AACQ01000093
eggNOG:COG5106 KO:K14847 RefSeq:XP_714912.1 RefSeq:XP_714974.1
STRING:Q59ZG6 GeneID:3643394 GeneID:3643467 KEGG:cal:CaO19.11036
KEGG:cal:CaO19.3553 Uniprot:Q59ZG6
Length = 327
Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
Identities = 109/311 (35%), Positives = 168/311 (54%)
Query: 1 MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
M++ PKN R KRAL K+ KLVE K L + G+ + L+D + +L KK A ++
Sbjct: 1 MIRTIKPKNARSKRALAKKEAKLVENTKSALFVPGSTGNKFLHDAMCDLMAFKKPFAKKF 60
Query: 61 TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
++KNE IRPFE + LEFF+ K D S+ ++ S +KKRP L R ++ +YD++ +
Sbjct: 61 SKKNE-IRPFEDSSQ--LEFFAEKNDSSLMVFSSNNKKRPKTLTFVRFFNFKVYDMIGLS 117
Query: 121 V-ENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLN 179
+ EN K L F KKL +G KP F G F+S +H+K + +D RGE + +
Sbjct: 118 IQENHKLLQDF---KKLTFTIGLKPMFVFNGPIFDSHPVYQHIKSLFLDFFRGEETDLQD 174
Query: 180 LAGLDHAYVCTA-----VSSNRVF-FTHCAL-RLK--KSGTIVPRMELVEVGPCMDFVVR 230
+AGL + +A +++++V H + +LK KSG +PR+EL E+GP DF +
Sbjct: 175 VAGLQYVIALSAGEVEDLNNDKVLPLVHFRVYKLKSYKSGQKLPRIELDEIGPRFDFKIG 234
Query: 231 RHRLPNESLRKEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVK 290
R P + KEA K K K KNV D + K+ +I++ Q L + K KG+K
Sbjct: 235 RRITPTPDVEKEATKKPKQLEAKVKKNVTTDFMGDKVAQIHVGKQDLSKLQT-RKMKGLK 293
Query: 291 RERREAKMKND 301
+ + + D
Sbjct: 294 EKYDQESEEED 304
>UNIPROTKB|Q59ZG6 [details] [associations]
symbol:RPF2 "Likely nucleolar ribosomal biogenesis factor
RPF2p" species:237561 "Candida albicans SC5314" [GO:0035690
"cellular response to drug" evidence=IMP] CGD:CAL0005924
GO:GO:0035690 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
PROSITE:PS50833 EMBL:AACQ01000094 EMBL:AACQ01000093 eggNOG:COG5106
KO:K14847 RefSeq:XP_714912.1 RefSeq:XP_714974.1 STRING:Q59ZG6
GeneID:3643394 GeneID:3643467 KEGG:cal:CaO19.11036
KEGG:cal:CaO19.3553 Uniprot:Q59ZG6
Length = 327
Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
Identities = 109/311 (35%), Positives = 168/311 (54%)
Query: 1 MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
M++ PKN R KRAL K+ KLVE K L + G+ + L+D + +L KK A ++
Sbjct: 1 MIRTIKPKNARSKRALAKKEAKLVENTKSALFVPGSTGNKFLHDAMCDLMAFKKPFAKKF 60
Query: 61 TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
++KNE IRPFE + LEFF+ K D S+ ++ S +KKRP L R ++ +YD++ +
Sbjct: 61 SKKNE-IRPFEDSSQ--LEFFAEKNDSSLMVFSSNNKKRPKTLTFVRFFNFKVYDMIGLS 117
Query: 121 V-ENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLN 179
+ EN K L F KKL +G KP F G F+S +H+K + +D RGE + +
Sbjct: 118 IQENHKLLQDF---KKLTFTIGLKPMFVFNGPIFDSHPVYQHIKSLFLDFFRGEETDLQD 174
Query: 180 LAGLDHAYVCTA-----VSSNRVF-FTHCAL-RLK--KSGTIVPRMELVEVGPCMDFVVR 230
+AGL + +A +++++V H + +LK KSG +PR+EL E+GP DF +
Sbjct: 175 VAGLQYVIALSAGEVEDLNNDKVLPLVHFRVYKLKSYKSGQKLPRIELDEIGPRFDFKIG 234
Query: 231 RHRLPNESLRKEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVK 290
R P + KEA K K K KNV D + K+ +I++ Q L + K KG+K
Sbjct: 235 RRITPTPDVEKEATKKPKQLEAKVKKNVTTDFMGDKVAQIHVGKQDLSKLQT-RKMKGLK 293
Query: 291 RERREAKMKND 301
+ + + D
Sbjct: 294 EKYDQESEEED 304
>ASPGD|ASPL0000042180 [details] [associations]
symbol:AN10200 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] EMBL:BN001307
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 PROSITE:PS50833
HOGENOM:HOG000157782 OMA:LDMFELG EnsemblFungi:CADANIAT00008105
Uniprot:C8VMF9
Length = 331
Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 107/306 (34%), Positives = 164/306 (53%)
Query: 1 MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
ML+ PKNPR R L+ + P+L+E K+ L+L G+K L+ VL + L ++ +
Sbjct: 1 MLREVKPKNPRTARILKAKEPQLIEGAKRVLLLHGSKCPTPLHTVLKVFHSLTTPHSVLF 60
Query: 61 TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
+KNENI PFES SLEF + K DC + I+GS++KKRP+ L I R +D + D+ E+
Sbjct: 61 HKKNENIHPFES--TESLEFLANKNDCGMVIFGSSNKKRPNCLTIARIFDSKVLDMAELL 118
Query: 121 V------ENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKH--LKEVLVDLLRG 172
+ E +N + +G +P + F G ++ H LK +LVDL +G
Sbjct: 119 LLPDANGEGIPEMNRL----SMHVAIGLRPLMLFSGSAWDDTTSTTHTMLKSMLVDLFKG 174
Query: 173 EVIENLNLAGLDHAYVCTAVSSNRVFFTHCALR-----LKKSGTIVPRMELVEVGPCMDF 227
E + +++ GL +A + A LR K+SG +PR+EL E+GP +DF
Sbjct: 175 ETSDKIDVEGLQYALMVGAEEPTAGLAPIIHLRWYKIVTKRSGHKLPRVELEEIGPKLDF 234
Query: 228 VVRRHRLPNESLRKEAMKTAKDQSK--KKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNK 285
V R + + KEAMK K ++ K KN+G D I K+G++++ Q LG + K
Sbjct: 235 KVGRIQEAPRDVMKEAMKQGKKPNEEIKNKKNIGIDLIGDKVGRVHLAKQDLGGLQT-RK 293
Query: 286 AKGVKR 291
KG+KR
Sbjct: 294 MKGLKR 299
>WB|WBGene00021830 [details] [associations]
symbol:Y54E10A.10 species:6239 "Caenorhabditis elegans"
[GO:0000003 "reproduction" evidence=IMP] GO:GO:0005730
GO:GO:0000003 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
PROSITE:PS50833 EMBL:FO081614 eggNOG:COG5106 KO:K14847 OMA:LDMFELG
RefSeq:NP_491117.1 ProteinModelPortal:Q9N3F0 STRING:Q9N3F0
PaxDb:Q9N3F0 EnsemblMetazoa:Y54E10A.10.1
EnsemblMetazoa:Y54E10A.10.2 GeneID:171892 KEGG:cel:CELE_Y54E10A.10
UCSC:Y54E10A.10.1 CTD:171892 WormBase:Y54E10A.10
GeneTree:ENSGT00390000007279 InParanoid:Q9N3F0 NextBio:873135
Uniprot:Q9N3F0
Length = 297
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 95/291 (32%), Positives = 156/291 (53%)
Query: 1 MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
M++V+ K + KR L RA K VE KK L +G KT+ ++ + +L+ +KK +
Sbjct: 1 MVRVEKIKTKKGKRVLVNRASKTVENDKKALFCRGAKTNEIISHAMMDLFDMKKPLTTKM 60
Query: 61 TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
+ N FE ET + K D S+F+ GS SKK+P+ L GRTYD + D+ E+
Sbjct: 61 DKHNP-YHLFED--ETPIVRAGSKFDTSLFVLGSNSKKKPNCLTFGRTYDGQLLDMAELR 117
Query: 121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
+ ++K ++F K +GSKP + G FES ++K + ++VD RG ++ + L
Sbjct: 118 ITSYKSSSNFEAAKMT---LGSKPCVILEGAAFESDGDMKRIGNLMVDWFRGPKVDTVRL 174
Query: 181 AGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLR 240
GL+ V TA+ + LKKS T PR+EL E+GP + F V R +L +++L
Sbjct: 175 EGLETVIVFTALDETNLALRVYRPMLKKSATATPRVELAEMGPSISFEVMRKKLADDALF 234
Query: 241 KEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKR 291
K A K K KK+ KN+ +D ++ ++++ Q+ D+ K K +++
Sbjct: 235 KLACKKPKALMKKRRKNLSEDVFGNQLARVHVGKQRTDDIQT-RKVKALRK 284
>GENEDB_PFALCIPARUM|PF10_0278 [details] [associations]
symbol:PF10_0278 "BRIX domain containig
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:AE014185 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
PROSITE:PS50833 RefSeq:XP_001347562.1 ProteinModelPortal:Q8IJC0
EnsemblProtists:PF10_0278:mRNA GeneID:810435 KEGG:pfa:PF10_0278
EuPathDB:PlasmoDB:PF3D7_1028400 HOGENOM:HOG000284581 Uniprot:Q8IJC0
Length = 483
Score = 150 (57.9 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 40/180 (22%), Positives = 80/180 (44%)
Query: 16 LEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGE 75
L+KR E+ K L + K S L + + ++Y + K + + N+ +
Sbjct: 27 LKKREGVYEESSKYCLFIGSNKRSLILKNFMYDIYSIYKPLTCYMPKAHSNLSNIIDKID 86
Query: 76 TSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPLNSFIYDKK 135
++ + +CS F ++KK+P +IGR Y++ I D + ++ PL F K+
Sbjct: 87 KLVDI-CVHNNCSFFFSVFSTKKKPSRFIIGRLYNNKILDYYVFSLISYIPLKLFPLSKE 145
Query: 136 LAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYVCTAVSSN 195
+ +KP + G FE E +++K +L D + + ++ + + V +A N
Sbjct: 146 IL--YDTKPIVLIQGSYFEQNETNRYVKNILFDFFKHKNVDTFSKKSIQRLIVISAYQKN 203
Score = 119 (46.9 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 29/103 (28%), Positives = 51/103 (49%)
Query: 192 VSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRR-HRLPNESLRKEAMKTAKDQ 250
+S N+ T + K P+++ E+GP +F + ++ P +L +EA++T K Q
Sbjct: 381 ISFNQYLITKEFFNINKENEQPPKLQ--EIGPRFEFTLEENYKTPEYNLFQEALRTVKKQ 438
Query: 251 SKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRER 293
K K+KNV D I K+Y+ Q + + K VK+ +
Sbjct: 439 EKTKIKNVHVDEFGHNIKKVYVQKQNFSKLHTKH-TKFVKKNK 480
>UNIPROTKB|Q8IJC0 [details] [associations]
symbol:PF10_0278 "Nucleolar preribosomal assembly protein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:AE014185 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
PROSITE:PS50833 RefSeq:XP_001347562.1 ProteinModelPortal:Q8IJC0
EnsemblProtists:PF10_0278:mRNA GeneID:810435 KEGG:pfa:PF10_0278
EuPathDB:PlasmoDB:PF3D7_1028400 HOGENOM:HOG000284581 Uniprot:Q8IJC0
Length = 483
Score = 150 (57.9 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 40/180 (22%), Positives = 80/180 (44%)
Query: 16 LEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGE 75
L+KR E+ K L + K S L + + ++Y + K + + N+ +
Sbjct: 27 LKKREGVYEESSKYCLFIGSNKRSLILKNFMYDIYSIYKPLTCYMPKAHSNLSNIIDKID 86
Query: 76 TSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPLNSFIYDKK 135
++ + +CS F ++KK+P +IGR Y++ I D + ++ PL F K+
Sbjct: 87 KLVDI-CVHNNCSFFFSVFSTKKKPSRFIIGRLYNNKILDYYVFSLISYIPLKLFPLSKE 145
Query: 136 LAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYVCTAVSSN 195
+ +KP + G FE E +++K +L D + + ++ + + V +A N
Sbjct: 146 IL--YDTKPIVLIQGSYFEQNETNRYVKNILFDFFKHKNVDTFSKKSIQRLIVISAYQKN 203
Score = 119 (46.9 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 29/103 (28%), Positives = 51/103 (49%)
Query: 192 VSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRR-HRLPNESLRKEAMKTAKDQ 250
+S N+ T + K P+++ E+GP +F + ++ P +L +EA++T K Q
Sbjct: 381 ISFNQYLITKEFFNINKENEQPPKLQ--EIGPRFEFTLEENYKTPEYNLFQEALRTVKKQ 438
Query: 251 SKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRER 293
K K+KNV D I K+Y+ Q + + K VK+ +
Sbjct: 439 EKTKIKNVHVDEFGHNIKKVYVQKQNFSKLHTKH-TKFVKKNK 480
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.135 0.380 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 315 315 0.00082 116 3 11 22 0.42 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 20
No. of states in DFA: 569 (61 KB)
Total size of DFA: 185 KB (2107 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.61u 0.12s 27.73t Elapsed: 00:00:01
Total cpu time: 27.61u 0.12s 27.73t Elapsed: 00:00:01
Start: Sat May 11 08:18:29 2013 End: Sat May 11 08:18:30 2013