BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021234
(315 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HWC|A Chain A, Crystal Structure Of Chlorophenol 4-Monooxygenase (Tftd)
Of Burkholderia Cepacia Ac1100
pdb|3HWC|B Chain B, Crystal Structure Of Chlorophenol 4-Monooxygenase (Tftd)
Of Burkholderia Cepacia Ac1100
pdb|3HWC|C Chain C, Crystal Structure Of Chlorophenol 4-Monooxygenase (Tftd)
Of Burkholderia Cepacia Ac1100
pdb|3HWC|D Chain D, Crystal Structure Of Chlorophenol 4-Monooxygenase (Tftd)
Of Burkholderia Cepacia Ac1100
Length = 515
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 255 VKNVGQDAIQG---KIGKIY---IPDQKLGDMALPNKAKGVKRERREAKMKNDPTEHASK 308
VK VG G IG +Y IP +++ A+P GV RE+ +KNDP EH
Sbjct: 187 VKAVGTGIAFGDYMHIGCLYRPGIPGEQVIFAAIPTNTPGVTVFCRESTVKNDPAEHPLA 246
Query: 309 KQKEE 313
Q +E
Sbjct: 247 SQGDE 251
>pdb|2FTW|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Dictyostelium Discoideum
Length = 521
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 174 VIENLNLAGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHR 233
+ E + + G+ V T V+ N V+ + +K SG VPR GP D + +R +
Sbjct: 426 IFEGIKVTGI---AVTTIVAGNIVWSDNKLSCVKGSGRFVPRPPF---GPVFDGIEQRDK 479
Query: 234 LPNESLRKEAMKTAKDQSKK 253
+ NE LRK K +D + K
Sbjct: 480 VRNELLRKVDRKPYEDDNTK 499
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c
pdb|3N3C|A Chain A, Crystal Structure Of Native Bovine Pdp1c
Length = 467
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 188 VCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKEAMK 245
C+ S R+F+ + A+ L T++ VE G + +++ H+ PN+ KEA K
Sbjct: 79 ACSQAVSERLFY-YIAVSLLPHETLLEIENAVESGRALLPILQWHKHPNDYFSKEASK 135
>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
pdb|2PNQ|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
Length = 467
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 188 VCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKEAMK 245
C+ S R+F+ + A+ L T++ VE G + +++ H+ PN+ KEA K
Sbjct: 79 ACSQAVSERLFY-YIAVSLLPHETLLEIENAVESGRALLPILQWHKHPNDYFSKEASK 135
>pdb|3HGM|A Chain A, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|B Chain B, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|C Chain C, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|D Chain D, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
Length = 147
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 40 NTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEF--FSLKTDCSIFIYGSTSK 97
+ L D TE+ + K A + +R F GG S F+ K +C + + G+
Sbjct: 62 DALKDYATEIAVQAKTRATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGT 121
Query: 98 KRPDNLVIG 106
+L++G
Sbjct: 122 NGDKSLLLG 130
>pdb|3F0W|A Chain A, Human Numb-Like Protein, Phosphotyrosine Interaction
Domain
Length = 168
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 153 FESVEELKHLKEVLVDLLRGEVIENLNLAGLDH------AYVCTAVSSNRVFFTHCALRL 206
+ S + L+ + + DLL + IE ++ D +Y+C ++ R + HC L L
Sbjct: 83 WVSADGLRVVDDKTKDLLVDQTIEKVSFCAPDRNLDKAFSYICRDGTTRR-WICHCFLAL 141
Query: 207 KKSGTIVPRMELVEVGPCMDFVVRRHR 233
K SG + C++ RR +
Sbjct: 142 KDSGERLSHAVGCAFAACLERKQRREK 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,078,500
Number of Sequences: 62578
Number of extensions: 375804
Number of successful extensions: 958
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 956
Number of HSP's gapped (non-prelim): 7
length of query: 315
length of database: 14,973,337
effective HSP length: 99
effective length of query: 216
effective length of database: 8,778,115
effective search space: 1896072840
effective search space used: 1896072840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)