BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021234
(315 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LUG5|RPF2_ARATH Ribosome production factor 2 homolog OS=Arabidopsis thaliana
GN=At3g23620 PE=2 SV=1
Length = 314
Score = 459 bits (1180), Expect = e-128, Method: Compositional matrix adjust.
Identities = 224/314 (71%), Positives = 266/314 (84%), Gaps = 1/314 (0%)
Query: 1 MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
M++++TPK + KR LE RAPKLVETGKKTLIL GTKTS TL+ V+TELY LKKG AIRY
Sbjct: 1 MMEIRTPKTGKAKRVLESRAPKLVETGKKTLILHGTKTSATLSSVMTELYRLKKGGAIRY 60
Query: 61 TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
+R+NENIRPFESGGETSLEFFS KTDCSIF+YGS +KKRPDNLV+GR YDH +YDL+EVG
Sbjct: 61 SRRNENIRPFESGGETSLEFFSQKTDCSIFVYGSHTKKRPDNLVLGRMYDHQVYDLIEVG 120
Query: 121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
+ENFK L +F YDKK AP G+KPFICF+GEGFE+V ELKHLKEVL DL RGEV++NLNL
Sbjct: 121 IENFKSLRAFSYDKKFAPHEGTKPFICFIGEGFENVSELKHLKEVLTDLFRGEVVDNLNL 180
Query: 181 AGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLR 240
GLD AYVC+A+S +VF THCAL+LKKSG+IVPRMELVEVGP MD V+RR+RLPN+SL
Sbjct: 181 TGLDRAYVCSAISPTKVFLTHCALKLKKSGSIVPRMELVEVGPSMDLVIRRNRLPNDSLM 240
Query: 241 KEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKN 300
KEAM+T+KD+ KKK KNV QDA+ GK GKIY+PDQKL +M L +K+KG KRER++AK+K+
Sbjct: 241 KEAMRTSKDKPKKKEKNVDQDAVLGKTGKIYMPDQKLKEMKLFDKSKGSKRERKDAKLKH 300
Query: 301 DPTEHASKKQKEES 314
E +KK K S
Sbjct: 301 KE-ETVAKKMKVSS 313
>sp|Q9AWM9|RPF2_ORYSJ Ribosome production factor 2 homolog OS=Oryza sativa subsp.
japonica GN=Os01g0513800 PE=2 SV=1
Length = 310
Score = 441 bits (1134), Expect = e-123, Method: Compositional matrix adjust.
Identities = 210/308 (68%), Positives = 254/308 (82%), Gaps = 6/308 (1%)
Query: 4 VKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRK 63
++ P++ R KR L K APKLVETGKKTLIL GTKTS LN VL +L+ LK+ +A++Y++K
Sbjct: 5 IRVPRSQRAKRELLKHAPKLVETGKKTLILHGTKTSAVLNSVLADLFHLKRDNAVKYSKK 64
Query: 64 NENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVEN 123
N+NIRPFESGGETSLEFFSLKTDCS+ +YGS SKKRP+NLV+GRTYDHHIYDLVEVGVEN
Sbjct: 65 NDNIRPFESGGETSLEFFSLKTDCSLIVYGSHSKKRPNNLVLGRTYDHHIYDLVEVGVEN 124
Query: 124 FKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGL 183
+K + S++YDKKLAP++GSKPF F+GE FESVEELKHLKEVL+DL +GEV+ENLNLAG+
Sbjct: 125 YKSIESYVYDKKLAPKLGSKPFFAFIGEHFESVEELKHLKEVLLDLFKGEVVENLNLAGV 184
Query: 184 DHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKEA 243
D +VCTA+S V+ HCALRLK+SGT +PR+ELVEVGP MD VVRRHR P ESL+KEA
Sbjct: 185 DRVFVCTAISPTTVYMMHCALRLKRSGTSIPRIELVEVGPSMDLVVRRHRYPVESLKKEA 244
Query: 244 MKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKNDPT 303
MKTA KK+KNV +D + GK+GK+YIPDQ++ M+L N KG+KRERREAK D
Sbjct: 245 MKTA--DHAKKMKNVTKDPVHGKLGKVYIPDQQIAKMSLSNDVKGLKRERREAKKNKD-- 300
Query: 304 EHASKKQK 311
SKKQK
Sbjct: 301 --HSKKQK 306
>sp|Q9JJ80|RPF2_MOUSE Ribosome production factor 2 homolog OS=Mus musculus GN=Rpf2 PE=2
SV=2
Length = 306
Score = 226 bits (577), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/289 (43%), Positives = 178/289 (61%), Gaps = 8/289 (2%)
Query: 3 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
KV PK R KR LEKR PKL E K ++++G + T+ VL ++Y LKK + Y +
Sbjct: 6 KVLKPKTKRAKRFLEKREPKLTENIKNAMLIKGGNANATVTQVLRDMYALKKPYGVLYKK 65
Query: 63 KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
KN RPFE +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+G+E
Sbjct: 66 KNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIE 122
Query: 123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
F L K P G+KP + F G+ F+ E+ + LK +L+D RG + N+ LAG
Sbjct: 123 KFVSLKDIKTSK--CPE-GTKPMLIFAGDDFDVTEDFRRLKNLLIDFFRGPTVSNVRLAG 179
Query: 183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
L++ TA++ +V+F L LKKSG PR+EL E+GP +D V+RR L ++ L K
Sbjct: 180 LEYVLHFTALNG-KVYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVMRRTHLASDDLYKL 238
Query: 243 AMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKR 291
+MK K KK KN+ QD G+I++ Q L + K KG+K+
Sbjct: 239 SMKVPKALKPKKRKNISQDTFGTTFGRIHMQKQDLSKLQ-TRKMKGLKK 286
>sp|Q2YDN6|RPF2_BOVIN Ribosome production factor 2 homolog OS=Bos taurus GN=RPF2 PE=2
SV=1
Length = 306
Score = 219 bits (557), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 130/310 (41%), Positives = 190/310 (61%), Gaps = 10/310 (3%)
Query: 3 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
+V PK R KR LEKR PKL E K ++++G ++T+ VL ++Y LKK I Y +
Sbjct: 6 RVVKPKTKRAKRFLEKREPKLSENIKNAMLIKGGNANSTVTQVLRDVYALKKPYGILYKK 65
Query: 63 KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
KN RPFE +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+G+E
Sbjct: 66 KNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDIIELGIE 122
Query: 123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
F L K P G+KP + F G+ F+ E+ + LK +L+D RG + N+ LAG
Sbjct: 123 KFVSLKDIKNSK--CPE-GTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAG 179
Query: 183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
L++ TA++ +++F L LKKSG PR+EL E+GP +D V+RR L ++ L K
Sbjct: 180 LEYVLHFTALNG-KIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLASDDLYKL 238
Query: 243 AMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKNDP 302
+MK K KK KN+ D G+I++ Q L + K KG+K +R A+ K +
Sbjct: 239 SMKMPKALKPKKKKNISHDTFGTTYGRIHMQKQDLSKLQ-TRKMKGLK--KRPAERKAED 295
Query: 303 TEHASKKQKE 312
E+ SK+ K+
Sbjct: 296 EENKSKRIKK 305
>sp|Q9H7B2|RPF2_HUMAN Ribosome production factor 2 homolog OS=Homo sapiens GN=RPF2 PE=1
SV=2
Length = 306
Score = 216 bits (550), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 188/310 (60%), Gaps = 10/310 (3%)
Query: 3 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTR 62
+V PK R KR LEKR PKL E K ++++G + T+ VL ++Y LKK + Y +
Sbjct: 6 RVVKPKTKRAKRFLEKREPKLNENIKNAMLIKGGNANATVTKVLKDVYALKKPYGVLYKK 65
Query: 63 KNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVE 122
KN RPFE +TSLEFFS K+DCS+F++GS +KKRP+NLVIGR YD+H+ D++E+G+E
Sbjct: 66 KNIT-RPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIE 122
Query: 123 NFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAG 182
NF L K P G+KP + F G+ F+ E+ + LK +L+D RG + N+ LAG
Sbjct: 123 NFVSLKDIKNSK--CPE-GTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAG 179
Query: 183 LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLRKE 242
L++ TA++ +++F L LKKSG PR+EL E+GP +D V+RR L ++ L K
Sbjct: 180 LEYVLHFTALNG-KIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLASDDLYKL 238
Query: 243 AMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKMKNDP 302
+MK K KK KN+ D G+I++ Q L + K KG+K +R A+ +
Sbjct: 239 SMKMPKALKPKKKKNISHDTFGTTYGRIHMQKQDLSKLQ-TRKMKGLK--KRPAERITED 295
Query: 303 TEHASKKQKE 312
E SK+ K+
Sbjct: 296 HEKKSKRIKK 305
>sp|Q9UUG1|RPF2_SCHPO Ribosome production factor 2 homolog OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC926.08c PE=1 SV=1
Length = 317
Score = 199 bits (505), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 118/300 (39%), Positives = 174/300 (58%), Gaps = 17/300 (5%)
Query: 1 MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
ML+ PKN R KRALEKR PKLVE K + L+G TS DVL +++ LKK ++ +
Sbjct: 1 MLRQVKPKNARTKRALEKREPKLVEGAKTAIFLRGNATSQISLDVLGDIHALKKPFSVNF 60
Query: 61 TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
+KN NI PFE +SLEFFS K D ++ + + +KKRP NL R +++ + D++E+G
Sbjct: 61 QKKN-NILPFEDA--SSLEFFSEKNDAALAVMATHNKKRPHNLTWVRFFNYRVLDMIELG 117
Query: 121 VENFKPLNSFIYDKKLAPRV-GSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLN 179
+ N+K + SF P V G+KP I F G F++ +H+K + +D RGE I+ L+
Sbjct: 118 IVNYKSIQSF----SATPIVPGTKPMILFQGPVFDAHPTYRHIKSLFLDFFRGEPIQKLD 173
Query: 180 LAGLDHAYVCTAVSSNR--------VFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRR 231
AGL + V +A + V F +L K+ T +PR+EL E+GP +DF +RR
Sbjct: 174 SAGLSYVIVVSAAEAQEDETKPLPLVHFRVYGTKLLKTKTNLPRVELEEMGPRIDFNIRR 233
Query: 232 HRLPNESLRKEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKR 291
+ + +EA+K K Q K KNV D I K+G+I++ Q LG++ K KG+KR
Sbjct: 234 VQPAESDVLEEALKKPKTQEPKPKKNVDVDIIGNKVGRIHVDQQDLGNLQT-RKMKGLKR 292
>sp|Q54DJ0|RPF2_DICDI Ribosome production factor 2 homolog OS=Dictyostelium discoideum
GN=bxdc1 PE=3 SV=1
Length = 307
Score = 190 bits (483), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 161/282 (57%), Gaps = 7/282 (2%)
Query: 1 MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
LK + K+ K+ L + K VE K+ + ++G ++S+ + + +L++LKK AI+Y
Sbjct: 9 FLKREPSKSHAAKKFLRNKEAKEVEIVKQAMFIRGQQSSDIIQKLQKDLFMLKKPEAIQY 68
Query: 61 TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
+KN RP ES S+EF K++ S+F +GS SKKR NL++GR +D+ ++D++E+G
Sbjct: 69 NKKNA-FRPMESA--ESIEFLGEKSNSSLFTFGSHSKKREHNLIMGRLFDNAVFDMIEMG 125
Query: 121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
+ NFK + F D VG+KP F G FE+ E +K + + +D+ RG ++E +NL
Sbjct: 126 ISNFKSIKEFGAD---GSAVGNKPMFIFQGNEFENNETVKKVGNLFLDMFRGRLVEYINL 182
Query: 181 AGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNESLR 240
GLDH + TAV +++ F H SG+ +P+++L EVGP D +RR +L + L
Sbjct: 183 VGLDHVVIMTAV-DDKILFRHYTTIFSPSGSKIPKVDLKEVGPSFDITIRRTKLASADLE 241
Query: 241 KEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMAL 282
KEA K K K KNV DA+ G +Y Q +A
Sbjct: 242 KEAYKVHKSVVPKAKKNVETDALGQTFGTVYKNHQDFNKIAF 283
>sp|P36160|RPF2_YEAST Ribosome biogenesis protein RPF2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPF2 PE=1 SV=1
Length = 344
Score = 177 bits (450), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 116/301 (38%), Positives = 165/301 (54%), Gaps = 18/301 (5%)
Query: 1 MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
M++ PKN R KRAL KR KLVE K+ L + G + L+D++ +L LKK R+
Sbjct: 1 MIRTVKPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRF 60
Query: 61 TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
RKN +I PFE + LEFFS K DCS+ + ++SKKR +N+ RT+ + IYD++E+
Sbjct: 61 NRKN-DIHPFED--MSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELM 117
Query: 121 V-ENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLN 179
V +NFK L+ F KKL VG KP F G F++ K +K + +D RGE + +
Sbjct: 118 VADNFKLLSDF---KKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQD 174
Query: 180 LAGLDHAYVCTAVSSNR-------VFFTHCALRLKKS---GTIVPRMELVEVGPCMDFVV 229
+AGL H T + V F L+ KS G +PR+ELVE+GP +DF +
Sbjct: 175 VAGLQHVISMTIQGDFQDGEPLPNVLFRVYKLKSYKSDQGGKRLPRIELVEIGPRLDFKI 234
Query: 230 RRHRLPNESLRKEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGV 289
R P+ + EA K K K KNV D + K+G+I++ Q LG + K KG+
Sbjct: 235 GRIHTPSPDMVTEAHKKPKQLEMKTKKNVELDIMGDKLGRIHMGKQDLGKLQT-RKMKGL 293
Query: 290 K 290
K
Sbjct: 294 K 294
>sp|Q9VEB3|RPF2_DROME Ribosome production factor 2 homolog OS=Drosophila melanogaster
GN=CG7993 PE=2 SV=3
Length = 320
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 171/313 (54%), Gaps = 20/313 (6%)
Query: 1 MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
+L+++ PK + K+ L R P+L+E+ + L L G K + + +L LKK
Sbjct: 3 LLRIRKPKTRKGKKVLLAREPQLIESARTMLFLDGRKCGGNVKLCMKDLQALKKPLVKVL 62
Query: 61 TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
RKN+ I PF+ +SLEF ++K D ++F +GSTSKKRPDN+++GR +++ + D+ E+G
Sbjct: 63 NRKND-ITPFDD--PSSLEFLTMKNDAALFTFGSTSKKRPDNIILGRIFENEVLDMFELG 119
Query: 121 VENFKPLNSFIYDKKLAPRVGS--KPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENL 178
++ ++ ++ F +K +G+ KP + F G + EEL+ L+ + +D + E ++++
Sbjct: 120 IKRYQAISEFKNEK-----IGACVKPCLVFNGPKWAQTEELRRLRNLFIDTFQREKVDSI 174
Query: 179 NLAGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLPNES 238
L G++H T + + LKKSG PR+EL E+GP DF +RR ++ +E
Sbjct: 175 RLQGIEHVLSFTVTDDMNILMRSYRILLKKSGQRTPRIELEEIGPSADFSIRRTKIASED 234
Query: 239 LRKEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDMALPNKAKGVKRERREAKM 298
L K+A K K K KN+ DA+ G++++ Q+ G + + RR +
Sbjct: 235 LYKQARKQPKQLKVGKKKNISTDALGNTKGRVHLGKQQTGSI----------QTRRVKAL 284
Query: 299 KNDPTEHASKKQK 311
+ P E +Q+
Sbjct: 285 RKTPEEKKENRQR 297
>sp|Q9N3F0|RPF2_CAEEL Ribosome production factor 2 homolog OS=Caenorhabditis elegans
GN=Y54E10A.10 PE=3 SV=1
Length = 297
Score = 151 bits (381), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 97/285 (34%), Positives = 155/285 (54%), Gaps = 16/285 (5%)
Query: 1 MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRY 60
M++V+ K + KR L RA K VE KK L +G KT+ ++ + +L+ +KK +
Sbjct: 1 MVRVEKIKTKKGKRVLVNRASKTVENDKKALFCRGAKTNEIISHAMMDLFDMKKPLTTKM 60
Query: 61 TRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVG 120
+ N FE ET + K D S+F+ GS SKK+P+ L GRTYD + D+ E+
Sbjct: 61 DKHNP-YHLFED--ETPIVRAGSKFDTSLFVLGSNSKKKPNCLTFGRTYDGQLLDMAELR 117
Query: 121 VENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNL 180
+ ++K ++F K +GSKP + G FES ++K + ++VD RG ++ + L
Sbjct: 118 ITSYKSSSNFEAAKMT---LGSKPCVILEGAAFESDGDMKRIGNLMVDWFRGPKVDTVRL 174
Query: 181 AGLDHAYVCTAVSSNRVFFTHCALR-----LKKSGTIVPRMELVEVGPCMDFVVRRHRLP 235
GL+ V TA+ T+ ALR LKKS T PR+EL E+GP + F V R +L
Sbjct: 175 EGLETVIVFTALDE-----TNLALRVYRPMLKKSATATPRVELAEMGPSISFEVMRKKLA 229
Query: 236 NESLRKEAMKTAKDQSKKKVKNVGQDAIQGKIGKIYIPDQKLGDM 280
+++L K A K K KK+ KN+ +D ++ ++++ Q+ D+
Sbjct: 230 DDALFKLACKKPKALMKKRRKNLSEDVFGNQLARVHVGKQRTDDI 274
>sp|O87009|TFTD_BURCE FADH(2)-dependent monooxygenase TftD OS=Burkholderia cepacia
GN=tftD PE=1 SV=2
Length = 515
Score = 35.4 bits (80), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 255 VKNVGQDAIQG---KIGKIY---IPDQKLGDMALPNKAKGVKRERREAKMKNDPTEHASK 308
VK VG G IG +Y IP +++ A+P GV RE+ +KNDP EH
Sbjct: 187 VKAVGTGIAFGDYMHIGCLYRPGIPGEQVIFAAIPTNTPGVTVFCRESTVKNDPAEHPLA 246
Query: 309 KQKEE 313
Q +E
Sbjct: 247 SQGDE 251
>sp|Q02955|IL1R1_RAT Interleukin-1 receptor type 1 OS=Rattus norvegicus GN=Il1r1 PE=2
SV=1
Length = 576
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 13/100 (13%)
Query: 83 LKTDCSIFIYGSTSKKRPDNLVIGRTYDHHIYDLVEVGVENFKPLNSFIYDKKLAPRV-- 140
K D ++ S S P GRTYD ++ G +F L++F++ KL P V
Sbjct: 362 FKVDIVLWYRDSCSDFLPRKASDGRTYDAYVLYPKTYGEGSFAYLDTFVF--KLLPEVLE 419
Query: 141 ---GSKPFIC----FVGEGFESV--EELKHLKEVLVDLLR 171
G K FIC +VGE V E +K + +++ L+R
Sbjct: 420 GQFGYKLFICGRDDYVGEDTIEVTNENVKRSRRLIIILVR 459
>sp|Q55DL0|DPYS_DICDI Dihydropyrimidinase OS=Dictyostelium discoideum GN=pyd2 PE=1 SV=1
Length = 503
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 174 VIENLNLAGLDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHR 233
+ E + + G+ V T V+ N V+ + +K SG VPR GP D + +R +
Sbjct: 426 IFEGIKVTGI---AVTTIVAGNIVWSDNKLSCVKGSGRFVPRPPF---GPVFDGIEQRDK 479
Query: 234 LPNESLRKEAMKTAKDQSKK 253
+ NE LRK K +D + K
Sbjct: 480 VRNELLRKVDRKPYEDDNTK 499
>sp|Q97BK4|IF2P_THEVO Probable translation initiation factor IF-2 OS=Thermoplasma
volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 /
NBRC 15438 / GSS1) GN=infB PE=3 SV=1
Length = 589
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 9/91 (9%)
Query: 143 KPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYVCTAVSSNRVFFTHC 202
+P +C +G + H K L+D++RG + N G+ T V N++
Sbjct: 16 QPIVCVLGH-------VDHGKTTLLDIIRGTAVANKEPGGITQRIAATTVDINKIL--KA 66
Query: 203 ALRLKKSGTIVPRMELVEVGPCMDFVVRRHR 233
+L G +P + ++ + F R R
Sbjct: 67 TEKLNNKGMKIPGLLFIDTPGHVAFSNMRAR 97
>sp|P91408|AGT2L_CAEEL Alanine--glyoxylate aminotransferase 2-like OS=Caenorhabditis
elegans GN=T01B11.2 PE=2 SV=1
Length = 467
Score = 32.0 bits (71), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 12/105 (11%)
Query: 185 HAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFVVRRHRLP-NESLRKEA 243
H +V T + + F H G+ V + + V V PC D +HRL NE ++
Sbjct: 159 HGHVTTTMELSPYKFDH--------GSTVSQPDWVHVAPCPDVFRGKHRLADNELTNEDK 210
Query: 244 MKTAKDQSKKKVKNVGQDAIQGKIG-KIYIPD--QKLGDMALPNK 285
+ A Q VK++ D + G Y + Q G +P K
Sbjct: 211 LYAAGKQYSDDVKSILNDVESRQCGVAAYFAEALQSCGGQVIPPK 255
>sp|Q86KD1|CAND1_DICDI Cullin-associated NEDD8-dissociated protein 1 OS=Dictyostelium
discoideum GN=cand1 PE=3 SV=1
Length = 1238
Score = 31.6 bits (70), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 9 NPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGS 56
NP+ K L+++ PKLV++ K+LI + +T +L EL ++ GS
Sbjct: 423 NPQAKEVLKQQVPKLVQSISKSLIDKSIRTRVGAIALLKELVMIIPGS 470
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.135 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,506,768
Number of Sequences: 539616
Number of extensions: 4940086
Number of successful extensions: 15119
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 14987
Number of HSP's gapped (non-prelim): 116
length of query: 315
length of database: 191,569,459
effective HSP length: 117
effective length of query: 198
effective length of database: 128,434,387
effective search space: 25430008626
effective search space used: 25430008626
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)