Query 021234
Match_columns 315
No_of_seqs 156 out of 491
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 14:42:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021234.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021234hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cxh_A Probable BRIX-domain ri 99.7 2.1E-17 7.2E-22 149.7 13.3 169 26-228 32-205 (217)
2 1w94_A MIL, probable BRIX-doma 98.3 9.9E-06 3.4E-10 69.5 12.6 124 29-190 1-124 (156)
3 2z08_A Universal stress protei 15.5 49 0.0017 25.2 1.0 23 76-98 89-111 (137)
4 3tnj_A Universal stress protei 14.6 61 0.0021 24.9 1.4 23 76-98 99-121 (150)
5 1mjh_A Protein (ATP-binding do 13.8 60 0.002 25.4 1.2 23 76-98 110-132 (162)
6 3hgm_A Universal stress protei 13.5 62 0.0021 24.7 1.2 26 76-101 100-125 (147)
7 2gm3_A Unknown protein; AT3G01 13.5 83 0.0028 25.0 2.0 23 76-98 114-136 (175)
8 3dlo_A Universal stress protei 12.7 90 0.0031 24.6 2.0 31 76-106 107-137 (155)
9 2dum_A Hypothetical protein PH 12.6 67 0.0023 25.4 1.1 22 76-97 107-128 (170)
10 3s3t_A Nucleotide-binding prot 11.6 83 0.0028 23.9 1.4 24 76-99 97-121 (146)
No 1
>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2
Probab=99.73 E-value=2.1e-17 Score=149.69 Aligned_cols=169 Identities=11% Similarity=0.100 Sum_probs=132.6
Q ss_pred cCceEEEEeCCCCChhHHHHHHHHHhccccceeeeccCCCccccCCCCCCchhHhhhhcCCCCeEEEEeecCCCCCceEE
Q 021234 26 TGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVI 105 (315)
Q Consensus 26 n~K~~L~l~g~~~s~~~~~llkDL~~L~kP~a~~~~Kkn~~i~pFe~~~~~~le~la~k~dcslf~~~s~sKKrP~~L~i 105 (315)
...++||++|++.|++++++++||..+. ||+.+++|++..+ ..|.++|..++|+.++++..+++.|++|||
T Consensus 32 ~~pKvLITTSr~pS~r~r~fakeL~~~l-Pns~~i~Rgk~sL--------keL~e~a~~~~~tdlivV~e~rg~p~~L~~ 102 (217)
T 2cxh_A 32 GGYRILVTTSRRPSPRIRSFVKDLSATI-PGAFRFTRGHYSM--------EELAREAIIRGADRIVVVGERRGNPGIIRV 102 (217)
T ss_dssp -CCEEEEEESSSCCHHHHHHHHHHHTTS-TTEEECCCTTCCH--------HHHHHHHHHTTEEEEEEEEEETTEEEEEEE
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHHHC-CCCEEeecCCcCH--------HHHHHHHHhCCCCEEEEEEecCCCCcEEEE
Confidence 3567999999999999999999999997 9999988765434 588889999999988888888888999999
Q ss_pred EeccCC---ceeeeEEEEeeceeecccccCCC-CCCCCCCCccEEEEeCCCCCChhhHHHHHHHHHhhCCCCCCCccccC
Q 021234 106 GRTYDH---HIYDLVEVGVENFKPLNSFIYDK-KLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLA 181 (315)
Q Consensus 106 gR~~~g---~~lDm~ef~V~n~~~m~df~~~~-~~~~~~gskPlLvF~g~~F~~~~~~k~lk~ll~d~F~~~~~~~i~l~ 181 (315)
.++++| |. ++.|.|.|+++++|++..+ | ..+++|.|+ ++ |++. ++.++++||+++|+.|..+.-+..
T Consensus 103 ~hlP~G~~~P~--Ta~F~I~nv~l~~ei~~~g~~---~~~~rP~L~-~n--F~t~-~g~~i~~~f~~lFp~P~~~~~~~~ 173 (217)
T 2cxh_A 103 YAVEGPERPDN--IVSFIVKGVSLSRERRWGLPS---LRGGEVLVA-RP--LDSG-VAVEFADAFVIAFHARLKPPEAAG 173 (217)
T ss_dssp EECCSSSCCEE--EEEEEEEEEECHHHHTCCCCC---CCSCCEEEE-EE--SSSS-THHHHHHHHHHHHCCBSSCCSSSC
T ss_pred EECCCCCCCCc--EEEEEEeeEEehhhhccCCCc---cCCCCceEE-ee--ecCc-hHHHHHHHHHHHcCCCCCChhhhc
Confidence 999999 62 4899999999999999763 5 779999999 55 9965 789999999999998776322212
Q ss_pred C-CCEEEEEEEeCCCeEEEEEeEEEeeeCCCCCCCeeEEeeccceeEE
Q 021234 182 G-LDHAYVCTAVSSNRVFFTHCALRLKKSGTIVPRMELVEVGPCMDFV 228 (315)
Q Consensus 182 g-ld~Vi~ft~~d~~~I~fR~Y~I~~kksg~~~p~veL~EiGPr~dl~ 228 (315)
| .|-+++| +.. .|.|.+-+ ....+||.+-+.
T Consensus 174 ~~~d~~~~i---~~~-----~~~v~f~~--------~~~~~Gp~i~i~ 205 (217)
T 2cxh_A 174 YVEAVIESL---DAR-----TVAVTFRY--------GGAPVGPMLRLG 205 (217)
T ss_dssp EEEEEEEEE---ETT-----EEEEEEEC--------SSSEEEEEEEEE
T ss_pred ccccEEEEE---cCC-----cEEEEEec--------CCCccCcEEEEc
Confidence 1 3566666 233 23444321 244679887554
No 2
>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2
Probab=98.28 E-value=9.9e-06 Score=69.53 Aligned_cols=124 Identities=14% Similarity=-0.008 Sum_probs=86.9
Q ss_pred eEEEEeCCCCChhHHHHHHHHHhccccceeeeccCCCccccCCCCCCchhHhhhhcCCCCeEEEEeecCCCCCceEEEec
Q 021234 29 KTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFIYGSTSKKRPDNLVIGRT 108 (315)
Q Consensus 29 ~~L~l~g~~~s~~~~~llkDL~~L~kP~a~~~~Kkn~~i~pFe~~~~~~le~la~k~dcslf~~~s~sKKrP~~L~igR~ 108 (315)
++||.+|+..|+.+.++.++|.... ++.+++|++. +|.++++.....++++.++ ++.|+.|++.++
T Consensus 1 kilITTSr~Ps~~l~~fakeLa~~l--n~~~v~Rgk~-----------sl~~L~~~~~~~~iVV~e~-rg~P~~l~i~hl 66 (156)
T 1w94_A 1 HMLLTTSRKPSQRTRSFSQRLSRIM--GWRYINRGKM-----------SLRDVLIEARGPVAVVSER-HGNPARITFLDE 66 (156)
T ss_dssp CCEEEECSSCCHHHHHHHHHHHHHH--TCEECCCTTC-----------CHHHHHHHHSSCEEEEEEE-TTEEEEEEEECT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh--CCEEEeeCCc-----------CHHHHHHhcCCCEEEEEcC-CCCCCeEEEEeC
Confidence 4689999999999999999999885 8888888663 5666655444455555554 567999999999
Q ss_pred cCCceeeeEEEEeeceeecccccCCCCCCCCCCCccEEEEeCCCCCChhhHHHHHHHHHhhCCCCCCCccccCCCCEEEE
Q 021234 109 YDHHIYDLVEVGVENFKPLNSFIYDKKLAPRVGSKPFICFVGEGFESVEELKHLKEVLVDLLRGEVIENLNLAGLDHAYV 188 (315)
Q Consensus 109 ~~g~~lDm~ef~V~n~~~m~df~~~~~~~~~~gskPlLvF~g~~F~~~~~~k~lk~ll~d~F~~~~~~~i~l~gld~Vi~ 188 (315)
++||+ +.|.+ |+...+|....++ . .+++.++ .+.+ +.|.++|.-|.+. ..-+.|++
T Consensus 67 p~gpt---~~f~~-nv~l~~~~~~~~~-------~-~v~~~~~----~~~~----~~l~~~~~~~~~~----~~~~~~~~ 122 (156)
T 1w94_A 67 RGGER---GYILF-NPSFEMKKPELAD-------K-AVRVSSC----PPGS----EGLCNLMGLEVDE----SSSRDAWS 122 (156)
T ss_dssp TSCEE---EEEEE-EEEECSSCCCCSS-------C-CCEESCC----CTTC----HHHHHHHTCEECC----SCCTTEEE
T ss_pred CCCCE---EEEEE-ceEEcccCcccCC-------c-eEEEecC----ChhH----HHHHHHHCCCccC----CCCceEEE
Confidence 99999 57887 8888888753221 1 1444442 4445 5666677655432 12256888
Q ss_pred EE
Q 021234 189 CT 190 (315)
Q Consensus 189 ft 190 (315)
|.
T Consensus 123 i~ 124 (156)
T 1w94_A 123 IR 124 (156)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 3
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=15.50 E-value=49 Score=25.20 Aligned_cols=23 Identities=4% Similarity=0.115 Sum_probs=20.0
Q ss_pred chhHhhhhcCCCCeEEEEeecCC
Q 021234 76 TSLEFFSLKTDCSIFIYGSTSKK 98 (315)
Q Consensus 76 ~~le~la~k~dcslf~~~s~sKK 98 (315)
..|..+|+.++++++++|++.+.
T Consensus 89 ~~I~~~a~~~~~dliV~G~~~~~ 111 (137)
T 2z08_A 89 EAILQAARAEKADLIVMGTRGLG 111 (137)
T ss_dssp HHHHHHHHHTTCSEEEEESSCTT
T ss_pred HHHHHHHHHcCCCEEEECCCCCc
Confidence 67888999999999999998644
No 4
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=14.56 E-value=61 Score=24.91 Aligned_cols=23 Identities=9% Similarity=0.268 Sum_probs=18.5
Q ss_pred chhHhhhhcCCCCeEEEEeecCC
Q 021234 76 TSLEFFSLKTDCSIFIYGSTSKK 98 (315)
Q Consensus 76 ~~le~la~k~dcslf~~~s~sKK 98 (315)
..|..+|+.++++++|+|++.+.
T Consensus 99 ~~I~~~a~~~~~dliV~G~~~~~ 121 (150)
T 3tnj_A 99 EEIIRIAEQENVDLIVVGSHGRH 121 (150)
T ss_dssp HHHHHHHHHTTCSEEEEEEC---
T ss_pred HHHHHHHHHcCCCEEEEecCCCC
Confidence 68888999999999999998643
No 5
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=13.83 E-value=60 Score=25.42 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.0
Q ss_pred chhHhhhhcCCCCeEEEEeecCC
Q 021234 76 TSLEFFSLKTDCSIFIYGSTSKK 98 (315)
Q Consensus 76 ~~le~la~k~dcslf~~~s~sKK 98 (315)
..|..+|+..+|+++|+|++.+.
T Consensus 110 ~~I~~~a~~~~~dlIV~G~~g~~ 132 (162)
T 1mjh_A 110 EEIVKIAEDEGVDIIIMGSHGKT 132 (162)
T ss_dssp HHHHHHHHHTTCSEEEEESCCSS
T ss_pred HHHHHHHHHcCCCEEEEcCCCCC
Confidence 67888999999999999998654
No 6
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=13.52 E-value=62 Score=24.66 Aligned_cols=26 Identities=15% Similarity=0.459 Sum_probs=21.3
Q ss_pred chhHhhhhcCCCCeEEEEeecCCCCC
Q 021234 76 TSLEFFSLKTDCSIFIYGSTSKKRPD 101 (315)
Q Consensus 76 ~~le~la~k~dcslf~~~s~sKKrP~ 101 (315)
..|...|+.++++++++|++.+....
T Consensus 100 ~~I~~~a~~~~~dliV~G~~~~~~~~ 125 (147)
T 3hgm_A 100 RTIVRFARKRECDLVVIGAQGTNGDK 125 (147)
T ss_dssp HHHHHHHHHTTCSEEEECSSCTTCCS
T ss_pred HHHHHHHHHhCCCEEEEeCCCCcccc
Confidence 67888999999999999998654433
No 7
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=13.52 E-value=83 Score=25.03 Aligned_cols=23 Identities=9% Similarity=-0.000 Sum_probs=19.7
Q ss_pred chhHhhhhcCCCCeEEEEeecCC
Q 021234 76 TSLEFFSLKTDCSIFIYGSTSKK 98 (315)
Q Consensus 76 ~~le~la~k~dcslf~~~s~sKK 98 (315)
..|..+|+.++|+++|+|++.+.
T Consensus 114 ~~I~~~a~~~~~DLIVmG~~g~~ 136 (175)
T 2gm3_A 114 DVICQEVKRVRPDFLVVGSRGLG 136 (175)
T ss_dssp HHHHHHHHHHCCSEEEEEECCCC
T ss_pred HHHHHHHHHhCCCEEEEeCCCCC
Confidence 67888999999999999998543
No 8
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=12.69 E-value=90 Score=24.63 Aligned_cols=31 Identities=16% Similarity=0.329 Sum_probs=23.7
Q ss_pred chhHhhhhcCCCCeEEEEeecCCCCCceEEE
Q 021234 76 TSLEFFSLKTDCSIFIYGSTSKKRPDNLVIG 106 (315)
Q Consensus 76 ~~le~la~k~dcslf~~~s~sKKrP~~L~ig 106 (315)
..|..+|+.++++++|+|++....-..+++|
T Consensus 107 ~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lG 137 (155)
T 3dlo_A 107 DDIVDFADEVDAIAIVIGIRKRSPTGKLIFG 137 (155)
T ss_dssp HHHHHHHHHTTCSEEEEECCEECTTSCEECC
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCCEEec
Confidence 6888899999999999999865544444443
No 9
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=12.62 E-value=67 Score=25.40 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=19.3
Q ss_pred chhHhhhhcCCCCeEEEEeecC
Q 021234 76 TSLEFFSLKTDCSIFIYGSTSK 97 (315)
Q Consensus 76 ~~le~la~k~dcslf~~~s~sK 97 (315)
..|..+|+.++|+++|+|++..
T Consensus 107 ~~I~~~a~~~~~DlIV~G~~g~ 128 (170)
T 2dum_A 107 DEIVKVAEEENVSLIILPSRGK 128 (170)
T ss_dssp HHHHHHHHHTTCSEEEEESCCC
T ss_pred HHHHHHHHHcCCCEEEECCCCC
Confidence 5788899999999999999754
No 10
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=11.64 E-value=83 Score=23.93 Aligned_cols=24 Identities=13% Similarity=0.284 Sum_probs=19.6
Q ss_pred chhHh-hhhcCCCCeEEEEeecCCC
Q 021234 76 TSLEF-FSLKTDCSIFIYGSTSKKR 99 (315)
Q Consensus 76 ~~le~-la~k~dcslf~~~s~sKKr 99 (315)
..|.. .|+..+++++|+|++.+..
T Consensus 97 ~~I~~~~a~~~~~dliV~G~~~~~~ 121 (146)
T 3s3t_A 97 HTIEDYAKQHPEIDLIVLGATGTNS 121 (146)
T ss_dssp HHHHHHHHHSTTCCEEEEESCCSSC
T ss_pred HHHHHHHHhhcCCCEEEECCCCCCC
Confidence 56777 8889999999999986543
Done!